lowQualScore : 1111111111111111111111111111 1111111111111111111111111111111111
lowQualScore : 1 555555555 111111 22 4 4 1 1 1 33333 1 11 1 4444444444444444444 44444444444444444444444 1111 2222222 1 1 222222 1 1111 55555555555 1 1 222 3333333333333333333333333333 2 1 1 44444 1 44444 1 4444444 11111 1 111 111 1111111111111111111111111111111111 1 11 1111 22222 11 2222 22222 22 1 111 11 111 111 222
lowQualScore : 1 3 7 7 111111111 999999 66 0 0 0 0 8 0 0 0 00000 6 3 6 6 55 4 1 8888888888888888888 6 33333333333333333333333 0 2222 5 6666666 5 6 666 3 5 5 1 77 888888 3 0 5 3333 6 99999999999 6 6 111 0000000000000000000000000000 8 0 4 6 3 5 33333 3 11111 0 8 0 8888888 1 5 11 77777 44 9 6 11 8 3 222 0 4 333 4 66 5 999 5 5 66 5 2 5 4444444444444444444444444444444444 5 1 9 1 77 999 3 1 2222 5 00000 3 5 99 666 5 0 5555 22222 6 99 1 1 000 4 66 000 111 111 8 6 6
lowQualScore : . . . . ......... ...... .. . . . . . . . . ..... . . . . .. . . ................... . ....................... . .... . ....... . . ... . . . . .. ...... . . . .... . ........... . . ... ............................ . . . . . . ..... . ..... . . . ....... . . .. ..... .. . . .. . . ... . . ... . .. . ... . . .. . . . .................................. . . . . .. ... . . .... . ..... . . .. ... . . .... ..... . .. . . ... . .. ... ... ... . . .
lowQualScore : 4 3 5 8 000000000 222222 77 8 0 0 0 0 0 8 6 00000 0 3 0 7 00 0 4 7777777777777777777 0 44444444444444444444444 7 1111 7 0000000 0 7 888 5 7 7 7 99 777777 0 1 7 3333 7 66666666666 0 0 000 8888888888888888888888888888 0 6 0 7 3 0 33333 3 00000 0 0 8 6666666 0 6 88 44444 66 6 0 88 0 2 000 4 4 222 4 11 0 555 0 0 99 0 5 0 7777777777777777777777777777777777 7 7 1 7 77 333 0 4 1111 7 99999 7 7 33 333 7 1 7777 77777 7 22 0 0 000 3 77 000 333 888 3 7 0
consensus : GGGAACCAGTATGCCAAAGGCTC-TACTGGTTCTGAAATTTA-NTTTACCCC------AAGTTCAAATATGGTGATT-CCTAGACTATGG-TCAACACCTTTATAAAAGTAAGA--AGACTGTGA-TAAA-T-TAATGATAG-ATTTATTATTAACAA-GAATAAATA-TGTCAAGTTGATAACAA-T-AAN-NAA-TA-TA--T--C-CAAAATATCACAGT----AGA-AGTATAATAATTTAAATNAATAAAGCCCTG-A-T-AATTTAATAAA-TGT-AAAGAGAAAAG--AAAA-A-TA-GGGAGAAATAAAC-T-AT-GTATTTTTAACTTAAAGAACCT-TCCATACA-CCTCTTATAGATATA-GGCTTCTAAAAATAGAAA--CAGGGAAAGTTGAG-AT-AAAA---ATAA--C--CCTAGG-GATATCTAGATCCACCCTGAACCAAAAGAACTCA-GAGAGTTCTAAGAAAG--A-CGAACC-TTTAGG-TTCTTGAC-TCGTGTAAGAGTGATAATC-TAACTGACCA--GGGGTCTTTATATATGCCAACACA-TCCAATGAGGAAGGCAAATAC-ATCTAAAAATAGAGAGGCTT-A-GAGACTATAATT-TC--AACC-A--ATGAAA-TAACGGGGAA-C-AAA-TTACGTTTGGAAA--GTATG-ACAA-TATGGCGGG--GTA-TA---ATGAAANCATCAG--AC-AG-CAAAAGG-TAAAC-AAATGTAAAATCG-A-AATTCTGACTT----AAT-ATGAATATTAATA-ACCA-AAG-AA-ATAAATTACAT--GAAAACTATA---TGA-TATAG-GGTGACTCTGAA---GACNAAGTTTT-TAGTATA-AATCA--TCAAG-TAAAAATCAAAATT
Reference ( gi|2 ) : GGGAACCAGTATGCCAAAGGCTC-TACTGATTCTAAAA-----ATT-ACCCC------AAGTTCCAATATG-TGATTTCCTAGACTATGG-TCAACACCTTTATAAAAGTAAGA--A--CTATGA-TAGA-T-AAATGATAG-ATTTATTATTAACAA-AAAGAAATA-TGTCGAGTTGATAACAA-T-AAC-CAA-TC-TA--T--C-CAAAATATCACAGT----AGA-AGTATAATAATTTAAA-AAAGAGAGGCCTG-A-T-ACTTTAATAAA-TGT-AAAGAAAAAAG--AAAA-A-TA-GGGAGATATAAAC-T-AT-GTATTTTTAACTTAAAGAACCT-TCCATACAACCTCTTATA-ATATA-GGCTTCTAAAA-TAGAAC--CAGGGAAAGTTGAGTATCAAAA---ATAA--C--CCTAGG-GATATCTAGATCCACCCTG-ACCAAAAGAACTCA-GAGAGTTATAAGAAAGAAAACGAACC-TT--AG-TTCTTGAC-TCGTGTAAGAGTGATAATT-TAACTGACCA--GGG--CTTTATATATGCCAACACA-TCCAATGAGGAAGACAGATAC-ATCTAAAAATAGAGAGGCTT-A-GAGACTATAATT-TT--AACC-A--ATGAAA-TAACGGGGGA-C-AAA-TTACGTTTGGAAA--GTATG-ACAA-TATGGCGGGGCGGA-TA---ATGAAAATATCAG--ACCAG-GAAAAGG-TAAACAAAATGTAAAATCG-A-AATTCTGACTT----AAT-ACGAAGATTGATA-ACC--AGG-AA-ATAAATTACAT--AGAAACTATA---TTA-TATA--GATTACTCTGAA---GACCAAGTTTT-TAGTAGA-AATCA--ACATG-TAAAAGTCAAAATT
gi|3 : GGAAACCAGTATGCCAAAGGCTCCTACTGGTTCTGAAATTTA-ATTTACCCC------AAGTT--AATATGGTGATT-CCTA-ACTATGG-TCAA-ACCTTTATAAAAG-AAAA--G--CTGTGAATAAA-T-TAATAATAGCATTTATG--TAACCA-GAA-AAATAATGTCAAGTTCATAACAT-T-AAA-CAAATA-TA--T--TTCAAAATATCACAGT----AGA-AGTATAATAATTCAAA-TACTAAAGCCCTG-AAT-AATTTAATAAA-TAT-AAAGCAGAAAG--AAAA-A-TC-AGGAGAAATAAAC-TTAT-GTATTTTTAACTTAAAGGACCTGTCCATACA-CCTCT-ATAGATAAG-GGCTTCTAAAAATAGAAA--CAGGGAA-------------------T----C--CCTAGGCGATATCTAGATCCACCTGA-AACAAAAGAACTCAAGATAGTTCTAAGAAAGAAA-CGAACC-TTTAGG-TTCTTGACCTCGTGTAAGAGTGATAATT-T-ACTGACCAG-GGG--TTTTATATAGGCAAACACAGTCAGATGAGGAAG-CAAAT-C-ATCT-AACATAGAGAGTCTT-AGGAGACTATAATT-TC---ACC-A--ATGAAA-TAAC-GGGAA-C--AA-TTACGTTTGGAAA--GTATG-ACAATTATGG-GGGGT--A-TA---ATGAAAACATCAG--A--AG-CAAAAGG-TAAATAAATTA-AAAATCG-C-AAATCTG-CTT----ATA-ATGAACATTAATT-AAC--AGA-GA-ATAAATTACAT---GAAACTATA---TGACTATA--AGTGACTCTGAA---GACAAAGTTTT-TAGTCTACAATCA--TGAAG-TAAAAATCAAA
gi|4 : acgGGGAACCAGTATG-----------------TTCTTAAA-----TTT-ACCCC------AAGTTC-AATATGGTGATT-CCTAGACTATGG-TCAACACCTTTGTAAAAGTAAGA--AGACTGTTG-TAAA-T-TAATGATAG-ATTTATTATTAACAA-GAATAAATA-TGTCAAGTTGATAAAAA-TTAAT-AAA-TA-TA--TTTC-CAAAATATCACATT----AGA-AGTATAATAATTGAAATAAATAAAGCTCTG-A-TAATTTTGATAAA-TGT-AAAGAGAAAAG--AAAA----A-GGAAGAAATAAAC-T-AA-GTATTTTTAACTTAAAGAACC--TCCAT--AACCATCTACAGATATA-GGCTTCTAAAC-TA-AACAGCATG--AAG-TGAGAATAAAAATATACAA--C--C--ATG-GATATCTAGATTCATCCTGAACCAAAAGAA-TCA-GAGAGTTCTAAAAGAG-----GAACCTTT--AGATTCTTGGC-TCGTGTAAGAGTGATAATTGTAACTGATCAACGGGC-CTTTATATAT-CCATCA-----CAATGAGGAAG-CAAATACAATCTAAAAATAGAGAGGCTTCA-GAAACTATAATT-TTC-AACCAA--ATGAAA-TATTGGGGG----AAA-TTA-G-TTGGAAA--GT-TG-A-AA-CACGGCGG---GTA-TA---ATGAAACCATCAG--ACCAG-CAAAA-G-T-AAC--AATGTAAAATCG-A-AATTCTGATTT----ATT-ATG-ATATTAACATACC--AAG-AACATAAATTACAT----AAACTAAA---CGA-TATA--GAGTGATTGGAA---GACCAA---TT-TAGTAAT-AATTA--TTAAG-TAAAAATCAAAATTttgttaccac
gi|6 : tgtaaaGGGAACC-GTATGCCAA-GGCTC-TACTGGTTCTGAAA-----TTT-CCCCCCCCCCAAAGGTCAAATATGGTGATT-CCTAGACTATGGGTCAACACCTTTATAAA-GTAAGA--AGACTGTGA-TAAA-T-TAATGATAG-ATTTAATATTAGCAA-GAATAGATA-TGTTAAGTTGATAACAA-T-A----AA-TA-TATTT--C-CAAAATATCACA-T----AAA-AGTAGAATAATTTAAATAAATAAAGCCATG-A-C-AATTTAATAAA-TGTAAAAGAGAAAAG--AAAATATTA-GGGAGAAATAAAC-TAATAGTATGTTTgtaca
gi|1 : gtaacGGAAACCAGTATGCCAAAGGCTCCTACTGGTTCTGAAATTTA-ATTTACCCC------AAGTT--AATATGGTGATT-CCTA-ACTATGG-TCAA-ACCTTTATAAAAG-AAAA--G--CTGTGAATAAA-T-TAATAATAGCATTTATG--TAACCA-GAA-AAATAATGTCAAGTTCATAACAT-T-AAA-CAAATA-TA--T--TTCAAAATATCACAGT----AGA-AGTATAATAATTCAAA-TACTAAAGCCCTGAA-T-AATTTAATAAA-TAT-AAAGCAGAAAG--AAAA-A-TC-AGGAGAAATAAACTT-AT-GTATTTTTAACT
gi|5 : tttgaatttctgtatctcaagcgcacaattctaattctaaactctctaattctttgtatttttttttttaaaatttccaattccatctctcgcctcaatatgtcatgtgagatttgaagtttctaactgtcagtagtgtttgactgagtcctttaaaggctactttcctttccttgaattaaactgcagatctacatgccagtgccctcatatgactaatggactttcttttctcatactcatatcttcactctctcgtagcatgctgttgttcctgaactctctctctattcttctttcactctacctgttctgttttttctttctcagggcgcttccaaaattagtgtggtcgaagtcataaaaccttgaccctgacaatcgtaattggttagaagttttaaggcctatcaaaacaggatctttaagggtgtggatgtcatggaaaggggataaagcagcgtgatgccatggtttcttatctaggaatcaccgaggcgagcccccaaaaaatgtaacgGGGAACAAGTATGCCAAAGGCTC-TACTGGTTCTGAAATTTAAATTTACCCC------AAGTTCAAA-ATGGTGATT-CCTAGACTATGG-TCAACACCTTTATAAAAGTAAGAAGA--CTGTGA-TAAATT-AAATAATAG-ATTTATT-------------------TGTCAAGTTGATACCAATT-AACAAAA-TA-TATTT--C-CAAATTATCACAGT----AGA-AGT---ATAATTTAAA-
gi|16 : tttgatttatgtatctcagcagacaattctaattctaaactctaaaactcttgtatttttcttacaatttcatccatctctcgctcattgtcactgtgagattgatctaactgtacagtaggtttgactgagtccttaaaggttactttcctttctgaattaactgcagatgtacatgcagtgcccccattatgactaatggactttcttttctcatactcattcttcactctcgtagcatgctgttagttcctgaaactctctctctaattctctttcactcttactgtctgtttctttctcaagggctacaaaattatagtttgtcgagtcagaaaactcttgaccctgtgatctattgacattagttttaggcctagcacccttatctttaggtgtggatgtatggaaggggaataaaggtgatgccatggtttctatctgggaatcccgaggcgagccccccaaaatgtaacGGGAACCAGTATGCCAAA
gi|22 : tcaagtttgaatgtatggaaagggaacaaaggtgatgcatgcatggtttctatctaggaatcccgagacgagcccccaaaaaagtaacAGGCTT-TACTGGTTCTGAAA-----TTT-ACCCC------AAGTTC
gi|15 : TGTGA-TAAA-TTAAATGATAG-ATTTATTATT----------------TGTCAAGTTGATAACAAGT-AAT-AAA-TA-TA--TTTC-CAAAATATCACAGTCAGTAGA-AGTATAAAAATTTAAATAAATAAAGCCCTG-A-T-AATTTAa
gi|12 : AAT-ATAT-ATATATTATTA-CAAGAAATAAATA-TGTCAAGTTGATAACAA-T-TGA-TAA-TAGTT--T--C-CAAAATATCACAGT----AGGCAGTATAATAATTTAAA-TAAATAAGCCCTG-A-T-AATTTAATAAAATGT-AAAGAGAAAAG--AAAA--------GAACTA-GGCC-T-AT-GTATTTTTGACTTAAAG
gi|13 : TTTA-TAAA-TAT-AAAGAGAAAAGGAAAAA-A-TAAGGGAGAAACAAAC-T-AT-GTATTTTTAACTTAAAGAACCT-TCTATACA--CTC-TATAGATATAGGGCTTCTAAAA-TAGAAA--CAGGGA-----------C----------A--C--CCTAGG-GATATCTAGATCCACCCTGAACCAAAAGAA
gi|19 : -TAT-AAAGAGAAAAG--AAAA-T-AA-GGGAGCGATAAAC-T----GTATTTTTAACAAAAACAACCT-TCCATACA
gi|18 : TAACTTGAAGAATCT-TCCATACA-CCTCTAGAG-ATATAAGGCTTCTAAAA-TAGAAA--CAGGGAAAGT---------------ATAA--CATCCTAGG-GATATCTAGATCCACCCTGAACCAcgtcaagaaacatctaaaattagaga
gi|20 : GAACAT-TCCATACA-CCT----------TG-GGCTTCTAAAAATAGAAA--CAGGGATAGTTGAGTATTAAAA---ATAACTC--CCTAGG-GATA
gi|9 : CTATATCCATCTGA-ACCAAATGAACTCA-GAGAGTTCTAAGAAA---AACGAACC-TTTAGG-TTCTTGAC-TCGTATCAGAGTGATAATC-TAATTTACCA----------------TGCC------------TGA---AGGCAAAAAC-ATCTAAAAATAGAGAGGCTT-A-GAGTCTATAATT-TC--AACC-A--ATGAAA-TAACGGGGAA-C-AAA-TTACGTTCGGAAA--GTATG-ACAA-TATGGCGG---GTA-TA---ATGAAACTA------AC-----AAAAGG-TAAAT--AATG--------------------------AAT-A------TTAATA-ACCA-AAG-AA-ATAAATTACAT--GAAAACTACA---
gi|17 : C-TTGTGTAAGAGTGATAATC-TAACTGACCA--AGAGTCTTTATAT-TGCCAACACA-TCCAATGAAAAAGGCAAATAC-ATC--------------CTT-A-GAGACTATAATT-TC--AACC-A--ATGAA
gi|8 : -TAACTGACCA--AGGGTCTATATATATGTCAACACA-TTCAATCAGAATGGCAAAGAC-ATATAAAAATAGAGAGGCTT-C-GAGACTATATTT-CC--GACC-A--ATGAAA-TTACGGGGAA-C-AAA-TTACGTTTGGAAA--GTATG-ACAA-AATGGCGGG------TA---TTAGGATTAT--------AG-CAAAAGG-TAAAC-AAATGTAAAATCG-A-AATTCTAACTTTTAGAAT-AGGAATATTAATA-ACC--AAATAA-ATAAATCAGAT--GAAATCTATA---TGA-TATAG-GGTGACTCTGAA---GACGAA
gi|10 : TAAAATTAGAGAGGCTT-C-GAGATTATAATT-TC--AACC-A--ATGAAA-CTACTGGGAA-CGAAA-TT-CGTTTGGAAA--GTATG-ACAA-AATGGCGGG------------------TAT--------------AAGG-TTAGCAAA-TGTGAAATCG-A-AATTCTCACTC----GAT-ATGAATATTGATA-ACCA-AAG-AA-ATGAATCATAT--GAAAACTGTA---TTA-TATAG-GATGACTCTGAATTTGA--AAA--TT-TGGTATA-AATCT--ACATG-TAAAA
gi|11 : TAGAGAGGCTT-ATGAGACTATGGCT-TTTCAACC-A--ATGAAA-TAACGGGGGAAC-AAA-TTACGTTTGGAAA--GTATG-A-AA-TATGGCGG---GTATTA---CTGAAAACAACAG--A-CAG-CAAAAGGTTAAACTAAATG-GGTACCG-ATAATT-TGACTT----AAT-ATGAGTATTAATA-ACC--AAA-GA-AT-AATTACAT--TG-AACTATA----GA-TATAG-GGTGACTCTGAA---GACCAA-TTTT-T-GTATA-AATCA--TCAAG-TAAAAATCAAAATTaattgctacnaaaatttggtataaatctacatgtaaaaa
gi|7 : AGAGAGGCTT-A-AAC-CTATGCTTGTC--AACC-AGGATGAAAATAACGGC--A-C-AAAATTACGTTTGGAGAAGGTATGGACAA-TATGGCGGG------TATTGATGAAAAC--CAGCAACTAGCAAAAAGG-TAAAACAAATGT--AACCGAA-AATTTTGACTT----AATCATGAGTATTAATA-ACCAAAGA-AA-GTAAATTACATGAAAAGACTATAAGCTGA-TATAGGGGTGACTCTG-A---GACCAATTTTTGTA-TAGA-AATCATTTCAAGCTAAAAATCAAAATTgttac
gi|14 : -TC--AACC-A--ATGAAA-TAACGGGA-A-C-AAA-TTACGTCTTGAAA--GTATG-ACAA-TATGGCGGgttgacacatgtatgca
gi|21 : tgaagattaaaaaaaatcaacataaattacataaaactg---GACGAAGTTTT--GGTATA-AATCA--TCATG-TAAAAATCAAAATTtagagtagcaaaaaggtaaattaagctggccattaatgatacaaagtatgctttta
Alignments
lowQualScore : 1 111111 1 1 1 11 1 1 1 1111111 1111 1 111111 111 2222 1 111 999999999999999999999999999 1 333 11 1 4444444444444 1 1111 11 1
lowQualScore : 0 1 888888 5 55 6 6 6 6 7 1 1 5 5 2 0 9 55 3 77 0 5 777 0 5 5555555 0000 5 2 5 5 5 5 5 66 888888 5 222 5 5 5 3333 0 1 000 8 444444444444444444444444444 99 6 6 2 0 3 111 3 8 6 88 666 8888 6 1 1 6 5 555 4 00 4 4 55 4 4 6 4 4 66 4 1 4 7 1 66 4 4 0 7777777777777 4 4 4 0 77 777 1 0000 0 5 0 5 3 5 5 8 66 8888 5 00 888 1 8 9 8888 77 2 5
lowQualScore : . . ...... . .. . . . . . . . . . . . . .. . .. . . ... . . ....... .... . . . . . . . .. ...... . ... . . . .... . . ... . ........................... .. . . . . . ... . . . .. ... .... . . . . . ... . .. . . .. . . . . . .. . . . . . .. . . . ............. . . . . .. ... . .... . . . . . . . . .. .... . .. ... . . . .... .. . .
lowQualScore : 1 4 444444 7 66 7 7 7 7 3 3 4 0 0 2 0 4 11 0 22 0 0 000 0 0 6666666 6666 0 1 7 7 0 7 0 99 666666 0 111 0 7 7 9999 7 4 000 7 222222222222222222222222222 22 7 7 5 0 2 222 2 0 7 88 555 2222 7 0 0 7 1 222 4 66 0 0 55 4 4 7 4 4 11 4 1 4 8 1 11 4 4 1 0000000000000 4 4 4 0 22 000 4 6666 5 0 1 0 2 0 0 1 99 9999 7 00 888 0 6 3 3333 99 1 7
consensus : GGGAACCAGTATGCCAAAGGCTC-TACTGGTTCTGAAATTT-AATTTACCCCAA-GTTCAAATATGGTGATT-CCTAGACTAT-GGTCAACACCTTTATAAAAGTAAGAAGACTGTGA-TAAATT-AA-TGATAG-ATTTATTATTAACAAGAA-TAAATA-TGTCAAGTTGATAACAA-TAA-ANAA-TA-TA--T--C-CAAAATATCACAGT----AGA-AGTATAATAATTTAAATAAATAAAGCCCTG-A-TAA-TTTAAT-AAATGT-AAAGAGAAAAG--AAAA-A-TA-GGGAGAAATAAA-C-T-AT-GTATTTTTAACTTAAAGAACCT-TCCATACA-CCTCTTATAGATATA-GGCTTCTAA---AAATAGAAACAGGGAAAGTTGAG-A-T-AAAAAT----AA--C--CCTAGG-GATATCTAGATCCACCCTGAACCAAAAGAACTCA-GAGAGTTCTAAGAAAGAAA-CGAACCTTTAGGTTCTTGAC-TCGTGTAAGAGTGATAATT-TAACTGACCAA-GGGTCTTTATATATGCCAACACATCCA-ATGAGGAAGGCAAATAC-ATCTAAAAATAGAGAGGCTT-A-G-AGACTATAA--TT-TCAACC-A--ATGAAA-TAAC-GGGGAAC-AAA-TTACGTTTGGAAA--GTATG-ACAA-TATGGCGGGGT--A-T-AATGAAANCATCAG--A-C-AGCAAAA-GG-TAAA-C-AAATGTAAAATCG-A-AATTCTGACTT----AAT-ATGAATATTAATA-ACCAAAGAAA-TAAATTACA-TGAAA--ACTATA---TGA-TATA-GGGTGACTCTGAA---GACNAAGTTTTTAGTAT--A-AATCA--TCANG-TAAAAATCAAAATT
Reference ( family-3788 ) : GGGAACCAGTATGCCAAAGGCTC-TACTGGTTCTGAAATTT-ANTTTACCCCAA-GTTCAAATATGGTGATT-CCTAGACTAT-GGTCAACACCTTTATAAAAGTAAGAAGACTGTGA-TAAATT-AA-TGATAG-ATTTATTATTAACAAGAA-TAAATA-TGTCAAGTTGATAACAA-TAA-NNAA-TA-TA--T--C-CAAAATATCACAGT----AGA-AGTATAATAATTTAAATNAATAAAGCCCTG-A-TAA-TTTAAT-AAATGT-AAAGAGAAAAG--AAAA-A-TA-GGGAGAAATAAA-C-T-AT-GTATTTTTAACTTAAAGAACCT-TCCATACA-CCTCTTATAGATATA-GGCTTCTAA---AAATAGAAACAGGGAAAGTTGAG-A-T-AAAAAT----AA--C--CCTAGG-GATATCTAGATCCACCCTGAACCAAAAGAACTCA-GAGAGTTCTAAGAAAGA---CGAACCTTTAGGTTCTTGAC-TCGTGTAAGAGTGATAATC-TAACTGACCAG-GGGTCTTTATATATGCCAACACATCCA-ATGAGGAAGGCAAATAC-ATCTAAAAATAGAGAGGCTT-A-G-AGACTATAA--TT-TCAACC-A--ATGAAA-TAAC-GGGGAAC-AAA-TTACGTTTGGAAA--GTATG-ACAA-TATGGCGGGGT--A-T-AATGAAANCATCAG--A-C-AGCAAAA-GG-TAAA-C-AAATGTAAAATCG-A-AATTCTGACTT----AAT-ATGAATATTAATA-ACCAAAGAAA-TAAATTACA-TGAAA--ACTATA---TGA-TATA-GGGTGACTCTGAA---GACNAAGTTTTTAGTAT--A-AATCA--TCAAG-TAAAAATCAAAATT
gi|1 : GGAAACCAGTATGCCAAAGGCTCCTACTGGTTCTGAAATTT-AATTTACCCCAA-GTT--AATATGGTGATT-CCTA-ACTAT-GGTCAA-ACCTTTATAAAAG--AAAAG-CTGTGAATAAATT-AA-TAATAGCATTTATG--TAACCAGAA--AAATAATGTCAAGTTCATAACAT-TAA-ACAAATA-TA--T--TTCAAAATATCACAGT----AGA-AGTATAATAATTCAAAT-ACTAAAGCCCTGAA-TAA-TTTAAT-AAATAT-AAAGCAGAAAG--AAAA-A-TC-AGGAGAAATAAA-CTT-AT-GTATTTTTAACT
gi|10 : tttgaatttctgtatctcaagcgcacaattctaattctaaactctctaattctttgtatttttttttttaaaatttccaattccatctctcgcctcaatatgtcatgtgagatttgaagtttctaactgtcagtagtgtttgactgagtcctttaaaggctactttcctttccttgaattaaactgcagatctacatgccagtgccctcatatgactaatggactttcttttctcatactcatatcttcactctctcgtagcatgctgttgttcctgaactctctctctattcttctttcactctacctgttctgttttttctttctcagggcgcttccaaaattagtgtggtcgaagtcataaaaccttgaccctgacaatcgtaattggttagaagttttaaggcctatcaaaacaggatctttaagggtgtggatgtcatggaaaggggataaagcagcgtgatgccatggtttcttatctaggaatcaccgaggcgagcccccaaaaaatgtaacgTAAAATTAGAGAGGCTT-C-G-AGATTATAA--TT-TCAACC-A--ATGAAA-CTAC-TGGGAACGAAA-TT-CGTTTGGAAA--GTATG-ACAA-AATGGCGGG-T--A-T-AA--------------------------GG-TTAG-C-AAATGTGAAATCG-A-AATTCTCACTC----GAT-ATGAATATTGATA-ACCAAAGAAA-TGAATCATA-TGAAA--ACTGTA---TTA-TATA-GGATGACTCTGAATTTGA-AAA---TTTGGTAT--A-AATCT--ACATG-TAAAAA
gi|11 : TAGAGAGGCTT-ATG-AGACTATGGCTTT-TCAACC-A--ATGAAA-TAACGGGGGAAC-AAA-TTACGTTTGGAAA--GTATG-A-AA-TATGGC-GGGT--ATT-ACTGAAAACAACAG--A-C-AGCAAAA-GGTTAAA-CTAAATG-GGTACCG-ATAATT-TGACTT----AAT-ATGAGTATTAATA-ACCAAAG-AA-T-AATTACATTG--A--ACTATA----GA-TATA-GGGTGACTCTGAA---GACCAA-TTTTT-GTAT--A-AATCA--TCAAG-TAAAAATCAAAATTattgctacnaaaatttggtataaatctacatgtaaaaa
gi|12 : -AA-T-ATAT-ATATATTATTA-CAAGAAATAAATA-TGTCAAGTTGATAACAA-TTG-ATAA-TAGTT--T--C-CAAAATATCACAGT----AGGCAGTATAATAATTTAAATAAAT-AAGCCCTG-A-TAA-TTTAATAAAATGT-AAAGAGAAAAG--AAA----------AGAACTAGGCC-T-AT-GTATTTTTGACTTAAAGgttac
gi|13 : -TTTA-T-AAATAT-AAAGAGAAAAGGAAAAA-A-TAAGGGAGAAACAAA-C-T-AT-GTATTTTTAACTTAAAGAACCT-TCTATACA--CTC-TATAGATATAGGGCTTCT-A---AAATAGAAACAGGGA-----------------------CA--C--CCTAGG-GATATCTAGATCCACCCTGAACCAAAAGAA
gi|14 : -TCAACC-A--ATGAAA-TAAC-GGG-AAC-AAA-TTACGTCTTGAAA--GTATG-ACAA-TATGGC--GGT--A-G-AGT---AGCA-------------AAAA-GG-TAAA-
gi|15 : tgaagattaaaaaaaatcaacataaattacataaaactgTGTGA-TAAATT-AAATGATAG-ATTTATTATT----------------TGTCAAGTTGATAACAAGTAA-TAAA-TA-TA--TTTC-CAAAATATCACAGTCAGTAGA-AGTATAAAAATTTAAATAAATAAAGCCCTG-A-TAA-TTTAttaagctggccattaatgatacaaagtatgctttta
gi|16 : GGGAACCAGTATGCCAAA
gi|17 : tcaagtttgaatgtatggaaagggaacaaaggtgatgcatgcatggtttctatctaggaatcccgagacgagcccccaaaaaagtaacC-TTGTGTAAGAGTGATAATC-TAACTGACCAA-GAGTCTTTATAT-TGCCAACACATCCA-ATGAAAAAGGCAAATAC-ATC--------------CTT-A-G-AGACTATAA--TT-TCAACC-A--ATGAA
gi|18 : TAACTTGAAGAATCT-TCCATACA-CCTCT-AGAGATATAAGGCTTCTAA---AA-TAGAAACAGGGAAAGT-------------AT----AA--CATCCTAGG-GATATCTAGATCCACCCTGAACCA
gi|19 : TAT-AAAGAGAAAAG--AAAA-T-AA-GGGAGCGATAAA-C----T-GTATTTTTAACAAAAACAACCT-TCCATACA-CGTC--A-AGAAACA-----TCTAA---AATTAGAGA
gi|2 : GGGAACCAGTATGCCAAAGGCTC-TACTGATTCTAAAA----A--TTACCCCAA-GTTCCAATATG-TGATTTCCTAGACTAT-GGTCAACACCTTTATAAAAGTAAGAA--CTATGA-TAGATA-AA-TGATAG-ATTTATTATTAACAAAAA-GAAATA-TGTCGAGTTGATAACAA-TAA-CCAA-TC-TA--T--C-CAAAATATCACAGT----AGA-AGTATAATAATTTAAA-AAAGAGAGGCCTG-A-TAC-TTTAAT-AAATGT-AAAGAAAAAAG--AAAA-A-TA-GGGAGATATAAA-C-T-AT-GTATTTTTAACTTAAAGAACCT-TCCATACAACCTCTTATA-ATATA-GGCTTCTAA---AA-TAGAACCAGGGAAAGTTGAGTA-TCAAAAAT----AA--C--CCTAGG-GATATCTAGATCCACCCTGA-CCAAAAGAACTCA-GAGAGTTATAAGAAAGAAAACGAACCTT--AGTTCTTGAC-TCGTGTAAGAGTGATAATT-TAACTGACCAG-GG--CTTTATATATGCCAACACATCCA-ATGAGGAAGACAGATAC-ATCTAAAAATAGAGAGGCTT-A-G-AGACTATAA--TT-TTAACC-A--ATGAAA-TAAC-GGGGGAC-AAA-TTACGTTTGGAAA--GTATG-ACAA-TATGGCGGGGCGGA-T-AATGAAAATATCAG--ACC-AGGAAAA-GG-TAAA-CAAAATGTAAAATCG-A-AATTCTGACTT----AAT-ACGAAGATTGATA-ACC-AGGAAA-TAAATTACA-TAGAA--ACTATA---TTA-TATA--GATTACTCTGAA---GACCAAGTTTTTAGTAG--A-AATCA--ACATG-TAAAAGTCAAAATT
gi|20 : GAACAT-TCCATACA-CCT----------TG-GGCTTCTAA---AAATAGAAACAGGGATAGTTGAGTATT-AAAAAT----AACTC--CCTAGG-GATA
gi|21 : ---GACGAAGTTTT-GGTAT--A-AATCA--TCATG-TAAAAATCAAAATT
gi|22 : AGGCTT-TACTGGTTCTGAAA------TTTACCCCAA-GTTCAgttaca
gi|3 : GGAAACCAGTATGCCAAAGGCTCCTACTGGTTCTGAAATTT-AATTTACCCCAA-GTT--AATATGGTGATT-CCTA-ACTAT-GGTCAA-ACCTTTATAAAAG--AAAAG-CTGTGAATAAATT-AA-TAATAGCATTTATG--TAACCAGAA--AAATAATGTCAAGTTCATAACAT-TAA-ACAAATA-TA--T--TTCAAAATATCACAGT----AGA-AGTATAATAATTCAAAT-ACTAAAGCCCTG-AATAA-TTTAAT-AAATAT-AAAGCAGAAAG--AAAA-A-TC-AGGAGAAATAAA-C-TTAT-GTATTTTTAACTTAAAGGACCTGTCCATACA-CCTCT-ATAGATAAG-GGCTTCTAA---AAATAGAAACAGGGAA-----------------T--------C--CCTAGGCGATATCTAGATCCACC-TGAAACAAAAGAACTCAAGATAGTTCTAAGAAAGAAA-CGAACCTTTAGGTTCTTGACCTCGTGTAAGAGTGATAATT-TA-CTGACCAG-GGGT-TTTATATAGGCAAACACAGTCAGATGAGGAAG-CAAAT-C-ATCTAACA-TAGAGAGTCTT-A-GGAGACTATAA--TT-TCA-CC-A--ATGAAA-TAAC-GGG-AAC-AA--TTACGTTTGGAAA--GTATG-ACAATTATGG-GGGGT--A-T-AATGAAAACATCAG--A---AGCAAAA-GG-TAAA-T-AAATTAAAAATCG-C-AAATCTG-CTT----ATA-ATGAACATTAATT-AACAGAG-AA-TAAATTACA-TG-AA--ACTATA---TGACTATA--AGTGACTCTGAA---GACAAAGTTTTTAGTCT--ACAATCA--TGAAG-TAAAAATCAAA
gi|4 : acgGGGAACCAGTATG-----------------TTCTTAAATTT-A-----CCCCAA-GTTCAA-TATGGTGATT-CCTAGACTAT-GGTCAACACCTTTGTAAAAGTAAGAAGACTGTTG-TAAATT-AA-TGATAG-ATTTATTATTAACAAGAA-TAAATA-TGTCAAGTTGATAAAAATTAA-TAAA-TA-TATTT--C-CAAAATATCACATT----AGA-AGTATAATAATTGAAATAAATAAAGCTCTG-A-TAATTTTGAT-AAATGT-AAAGAGAAAAG--AAAA----A-GGAAGAAATAAA-C-T-AA-GTATTTTTAACTTAAAGAACC--TCCATA-A-CCATCTACAGATATA-GGCTTCTAAACTAAACAG---CATG--AAG-TGAGAA-T-AAAAATATACAA--C--C--ATG-GATATCTAGATTCATCCTGAACCAAAAGAA-TCA-GAGAGTTCTA--AAAGA---GGAACCTTTAGATTCTTGGC-TCGTGTAAGAGTGATAATTGTAACTGATCAACGGGCCTTTATATAT-CCATCA----CA-ATGAGGAA-GCAAATACAATCTAAAAATAGAGAGGCTTCA-G-AAACTATAAT-TT-TCAACCAA--ATGAAA-TATT-GGGGG---AAA-TTA-G-TTGGAAA--GT-TG-A-AA-CACGGC-GGGT--A-T-AATGAAACCATCAG--ACC-AGCAAAA--G-T-AA-C--AATGTAAAATCG-A-AATTCTGATTT----ATT-ATG-ATATTAACATACCAAGAACA-TAAATTACA-T--AA--ACTAAA---CGA-TATA-GAGTGA-TTGGAA---GACCAA---TTTAGTAA--T-AATTA--TTAAG-TAAAAATCAAAATTttgttaccac
gi|5 : tgtaaaGGGAACAAGTATGCCAAAGGCTC-TACTGGTTCTGAAATTTAAATTTACCCCAA-GTTCAAA-ATGGTGATT-CCTAGACTAT-GGTCAACACCTTTATAAAAGTAAGAAGACTGTGA-TAAATTAAA-TAATAG-ATTTATT-------------------TGTCAAGTTGATACCAATTAACAAAA-TA-TATTT--C-CAAATTATCACAGT----AGA-AGT---ATAATTTAAAgtaca
gi|6 : tttgatttatgtatctcagcagacaattctaattctaaactctaaaactcttgtatttttcttacaatttcatccatctctcgctcattgtcactgtgagattgatctaactgtacagtaggtttgactgagtccttaaaggttactttcctttctgaattaactgcagatgtacatgcagtgcccccattatgactaatggactttcttttctcatactcattcttcactctcgtagcatgctgttagttcctgaaactctctctctaattctctttcactcttactgtctgtttctttctcaagggctacaaaattatagtttgtcgagtcagaaaactcttgaccctgtgatctattgacattagttttaggcctagcacccttatctttaggtgtggatgtatggaaggggaataaaggtgatgccatggtttctatctgggaatcccgaggcgagccccccaaaatgtaacGGGAACC-GTATGCCAA-GGCTC-TACTGGTTCTGAAATTT-CCCCCCCCCCAAAGGTCAAATATGGTGATT-CCTAGACTATGGGTCAACACCTTTAT-AAAGTAAGAAGACTGTGA-TAAATT-AA-TGATAG-ATTTAATATTAGCAAGAA-TAGATA-TGTTAAGTTGATAACAA-TAA-AT-A-TA-TT--T--C-CAAAATATCACA-T----AAA-AGTAGAATAATTTAAATAAATAAAGCCATG-A-CAA-TTTAAT-AAATGTAAAAGAGAAAAG--AAAATATTA-GGGAGAAATAAA-C-TAATAGTATGTTT
gi|7 : gtaacAGAGAGGCTT-A-A-AC-CTATGC--TTGTCAACC-AGGATGAAAATAAC-GGC--AC-AAAATTACGTTTGGAGAAGGTATGGACAA-TATGGCGGG-T--A-TTGATGAAAAC--CAGCAA-CTAGCAAAAAGG-TAAAAC-AAATGT--AACCGAA-AATTTTGACTT----AATCATGAGTATTAATA-ACCAAAGAAAGTAAATTACA-TGAAAAGACTATAAGCTGA-TATAGGGGTGACTCTG-A---GACCAA-TTTTT-GTATAGA-AATCATTTCAAGCTAAAAATCAAAATT
gi|8 : -TAACTGACCAA-GGGTCTATATATATGTCAACACATTCA-ATCAGAATGGCAAAGAC-ATATAAAAATAGAGAGGCTT-C-G-AGACTATAT--TT-CCGACC-A--ATGAAA-TTAC-GGGGAAC-AAA-TTACGTTTGGAAA--GTATG-ACAA-AATGGC-GGGT--A-T---TAGGATTAT---------AGCAAAA-GG-TAAA-C-AAATGTAAAATCG-A-AATTCTAACTTTTAGAAT-AGGAATATTAATA-ACCAAATAAA-TAAATCAGA-TGAAA--TCTATA---TGA-TATA-GGGTGACTCTGAA---GACGAAgttgacacatgtatgca
gi|9 : CTATATCCATC-TGAACCAAATGAACTCA-GAGAGTTCTAAGAAAAA---CGAACCTTTAGGTTCTTGAC-TCGTATCAGAGTGATAATC-TAATTTACC---------------ATGCC------------TGA---AGGCAAAAAC-ATCTAAAAATAGAGAGGCTT-A-G-AGTCTATAA--TT-TCAACC-A--ATGAAA-TAAC-GGGGAAC-AAA-TTACGTTCGGAAA--GTATG-ACAA-TATGGC-GGGT--A-T-AATGAAAC----------T-AACAAAA-GG-TAAA-T-AA-------------------TGA---------------ATATTAATA-ACCAAAGAAA-TAAATTACA-TGAAA--ACTACA---
Alignments
lowQualScore : 1 1 1 1 11 1 1 1 1111111 1111 111111 111 2222 1 111 999999999999999999999999999 1 11111 11 1 4444444444444 1 1111 11 1
lowQualScore : 0 1 1 5 1 3 5 55 6 6 6 6 7 1 1 5 5 2 0 9 55 3 77 0 5 666 0 5 5555555 0000 5 1 5 5 5 5 5 66 888888 5 222 5 5 5 3333 0 1 000 8 444444444444444444444444444 99 6 3 2 0 55555 3 8 6 6 666 888 1 1 6 6 1 999 00 4 4 55 4 4 1 4 4 66 4 1 4 7 1 66 4 4 0 7777777777777 4 4 4 0 77 777 1 0000 0 5 0 5 3 5 5 8 66 8888 5 00 888 1 8 9 8888 77 1 5
lowQualScore : . . . . . . . .. . . . . . . . . . . . . .. . .. . . ... . . ....... .... . . . . . . . .. ...... . ... . . . .... . . ... . ........................... .. . . . . ..... . . . . ... ... . . . . . ... .. . . .. . . . . . .. . . . . . .. . . . ............. . . . . .. ... . .... . . . . . . . . .. .... . .. ... . . . .... .. . .
lowQualScore : 1 4 4 7 4 6 7 66 7 7 7 7 3 3 4 0 0 2 0 4 11 0 22 0 0 555 0 0 6666666 6666 0 4 7 7 0 7 0 99 666666 0 111 0 7 7 9999 7 4 000 7 222222222222222222222222222 22 7 7 5 0 88888 2 0 7 7 555 222 0 0 7 7 4 777 66 0 0 55 4 4 1 4 4 11 4 1 4 8 1 11 4 4 1 0000000000000 4 4 4 0 22 000 4 6666 5 0 1 0 2 0 0 1 99 9999 7 00 888 0 6 3 3333 99 0 7
consensus : GGGAACCAGTATGCCAAAGGCTC-TACTGGTTCTGAAATTT-AATTTACCCCAA-GTTCAAATATGGTGATT-CCTAGACTAT-GGTCAACACCTTTATAAAAGTAAGAAGACTGTGA-TAAATT-AA-TGATAG-ATTTATTATTAACAAGAA-TAAATA-TGTCAAGTTGATAACAA-TAA-ANAA-TA-TA--T--C-CAAAATATCACAGT----AGA-AGTATAATAATTTAAATAAATAAAGCCCTG-A-TAA-TTTAAT-AAATGT-AAAGAGAAAAG--AAAA-A-TA-GGGAGAAATAAA-C-T-AT-GTATTTTTAACTTAAAGAACCT-TCCATACA-CCTCTTATAGATATA-GGCTTCTAA---AAATAGAAACAGGGAAAGTTGAG-A-T-AAAAAT----AA--C--CCTAGG-GATATCTAGATCCACCCTGAACCAAAAGAACTC-AGAGAGTTCTAAGAAAGAAA-CGAACCTTTAGGTTCTTGA-CTCGTGTAAGAGTGATAATT-TAACTGACCAA-GGGTCTTTATATATGCCAACACA-TCCAATGAGGAAGGCAAATAC-ATCTAAAAATAGAGAGGCTT-A-GAGACTATAA--TT-TCAACC-A--ATGAAA-TAAC-GGGGAAC-AAA-TTACGTTTGGAAA--GTATG-ACAA-TATGGCGGGGT--A-T-AATGAAANCATCAG--A-C-AGCAAAA-GG-TAAA-C-AAATGTAAAATCG-A-AATTCTGACTT----AAT-ATGAATATTAATA-ACCAAAGAAA-TAAATTACA-TGAAA--ACTATA---TGA-TATA-GGGTGACTCTGAA---GACNAAGTTTTTAGTAT--A-AATCA--TCANG-TAAAAATCAAAATT
Reference ( family-3788 ) : GGGAACCAGTATGCCAAAGGCTC-TACTGGTTCTGAAATTT-AATTTACCCCAA-GTTCAAATATGGTGATT-CCTAGACTAT-GGTCAACACCTTTATAAAAGTAAGAAGACTGTGA-TAAATT-AA-TGATAG-ATTTATTATTAACAAGAA-TAAATA-TGTCAAGTTGATAACAA-TAA-ANAA-TA-TA--T--C-CAAAATATCACAGT----AGA-AGTATAATAATTTAAATAAATAAAGCCCTG-A-TAA-TTTAAT-AAATGT-AAAGAGAAAAG--AAAA-A-TA-GGGAGAAATAAA-C-T-AT-GTATTTTTAACTTAAAGAACCT-TCCATACA-CCTCTTATAGATATA-GGCTTCTAA---AAATAGAAACAGGGAAAGTTGAG-A-T-AAAAAT----AA--C--CCTAGG-GATATCTAGATCCACCCTGAACCAAAAGAACTC-AGAGAGTTCTAAGAAAGAAA-CGAACCTTTAGGTTCTTGA-CTCGTGTAAGAGTGATAATT-TAACTGACCAA-GGGTCTTTATATATGCCAACACA-TCCAATGAGGAAGGCAAATAC-ATCTAAAAATAGAGAGGCTT-A-GAGACTATAA--TT-TCAACC-A--ATGAAA-TAAC-GGGGAAC-AAA-TTACGTTTGGAAA--GTATG-ACAA-TATGGCGGGGT--A-T-AATGAAANCATCAG--A-C-AGCAAAA-GG-TAAA-C-AAATGTAAAATCG-A-AATTCTGACTT----AAT-ATGAATATTAATA-ACCAAAGAAA-TAAATTACA-TGAAA--ACTATA---TGA-TATA-GGGTGACTCTGAA---GACNAAGTTTTTAGTAT--A-AATCA--TCANG-TAAAAATCAAAATT
gi|1 : GGAAACCAGTATGCCAAAGGCTCCTACTGGTTCTGAAATTT-AATTTACCCCAA-GTT--AATATGGTGATT-CCTA-ACTAT-GGTCAA-ACCTTTATAAAAG--AAAAG-CTGTGAATAAATT-AA-TAATAGCATTTATG--TAACCAGAA--AAATAATGTCAAGTTCATAACAT-TAA-ACAAATA-TA--T--TTCAAAATATCACAGT----AGA-AGTATAATAATTCAAAT-ACTAAAGCCCTGAA-TAA-TTTAAT-AAATAT-AAAGCAGAAAG--AAAA-A-TC-AGGAGAAATAAA-CTT-AT-GTATTTTTAACT
gi|10 : tttgaatttctgtatctcaagcgcacaattctaattctaaactctctaattctttgtatttttttttttaaaatttccaattccatctctcgcctcaatatgtcatgtgagatttgaagtttctaactgtcagtagtgtttgactgagtcctttaaaggctactttcctttccttgaattaaactgcagatctacatgccagtgccctcatatgactaatggactttcttttctcatactcatatcttcactctctcgtagcatgctgttgttcctgaactctctctctattcttctttcactctacctgttctgttttttctttctcagggcgcttccaaaattagtgtggtcgaagtcataaaaccttgaccctgacaatcgtaattggttagaagttttaaggcctatcaaaacaggatctttaagggtgtggatgtcatggaaaggggataaagcagcgtgatgccatggtttcttatctaggaatcaccgaggcgagcccccaaaaaatgtaacgTAAAATTAGAGAGGCTT-C-GAGATTATAA--TT-TCAACC-A--ATGAAA-CTAC-TGGGAACGAAA-TT-CGTTTGGAAA--GTATG-ACAA-AATGGCGGG-T--A-T-AA--------------------------GG-TTAG-C-AAATGTGAAATCG-A-AATTCTCACTC----GAT-ATGAATATTGATA-ACCAAAGAAA-TGAATCATA-TGAAA--ACTGTA---TTA-TATA-GGATGACTCTGAATTTGA-AAA---TTTGGTAT--A-AATCT--ACATG-TAAAAA
gi|11 : TAGAGAGGCTT-ATGAGACTATGGCTTT-TCAACC-A--ATGAAA-TAACGGGGGAAC-AAA-TTACGTTTGGAAA--GTATG-A-AA-TATGGC-GGGT--ATT-ACTGAAAACAACAG--A-C-AGCAAAA-GGTTAAA-CTAAATG-GGTACCG-ATAATT-TGACTT----AAT-ATGAGTATTAATA-ACCAAAG-AA-T-AATTACATTG--A--ACTATA----GA-TATA-GGGTGACTCTGAA---GACCAA-TTTTT-GTAT--A-AATCA--TCAAG-TAAAAATCAAAATTattgctacnaaaatttggtataaatctacatgtaaaaa
gi|12 : -AA-T-ATAT-ATATATTATTA-CAAGAAATAAATA-TGTCAAGTTGATAACAA-TTG-ATAA-TAGTT--T--C-CAAAATATCACAGT----AGGCAGTATAATAATTTAAATAAAT-AAGCCCTG-A-TAA-TTTAATAAAATGT-AAAGAGAAAAG--AAA----------AGAACTAGGCC-T-AT-GTATTTTTGACTTAAAGgttac
gi|13 : -TTTA-T-AAATAT-AAAGAGAAAAGGAAAAA-A-TAAGGGAGAAACAAA-C-T-AT-GTATTTTTAACTTAAAGAACCT-TCTATACA--CTC-TATAGATATAGGGCTTCT-A---AAATAGAAACAGGGA-----------------------CA--C--CCTAGG-GATATCTAGATCCACCCTGAACCAAAAGAA
gi|14 : -TCAACC-A--ATGAAA-TAAC-GGG-AAC-AAA-TTACGTCTTGAAA--GTATG-ACAA-TATGGC--GGT--A-G-AGT---AGCA-------------AAAA-GG-TAAA-
gi|15 : tgaagattaaaaaaaatcaacataaattacataaaactgTGTGA-TAAATT-AAATGATAG-ATTTATTATT----------------TGTCAAGTTGATAACAAGTAA-TAAA-TA-TA--TTTC-CAAAATATCACAGTCAGTAGA-AGTATAAAAATTTAAATAAATAAAGCCCTG-A-TAA-TTTAttaagctggccattaatgatacaaagtatgctttta
gi|16 : GGGAACCAGTATGCCAAA
gi|17 : tcaagtttgaatgtatggaaagggaacaaaggtgatgcatgcatggtttctatctaggaatcccgagacgagcccccaaaaaagtaac-CTTGTGTAAGAGTGATAATC-TAACTGACCAA-GAGTCTTTATAT-TGCCAACACA-TCCAATGAAAAAGGCAAATAC-ATC--------------CTT-A-GAGACTATAA--TT-TCAACC-A--ATGAA
gi|18 : TAACTTGAAGAATCT-TCCATACA-CCTCT-AGAGATATAAGGCTTCTAA---AA-TAGAAACAGGGAAAGT-------------AT----AA--CATCCTAGG-GATATCTAGATCCACCCTGAACCA
gi|19 : TAT-AAAGAGAAAAG--AAAA-T-AA-GGGAGCGATAAA-C----T-GTATTTTTAACAAAAACAACCT-TCCATACA-CGTC--A-AGAAACA-----TCTAA---AATTAGAGA
gi|2 : GGGAACCAGTATGCCAAAGGCTC-TACTGATTCTAAAA-----ATT-ACCCCAA-GTTCCAATATG-TGATTTCCTAGACTAT-GGTCAACACCTTTATAAAAGTAAGAA--CTATGA-TAGATA-AA-TGATAG-ATTTATTATTAACAAAAA-GAAATA-TGTCGAGTTGATAACAA-TAA-CCAA-TC-TA--T--C-CAAAATATCACAGT----AGA-AGTATAATAATTTAAA-AAAGAGAGGCCTG-A-TAC-TTTAAT-AAATGT-AAAGAAAAAAG--AAAA-A-TA-GGGAGATATAAA-C-T-AT-GTATTTTTAACTTAAAGAACCT-TCCATACAACCTCTTATA-ATATA-GGCTTCTAA---AA-TAGAACCAGGGAAAGTTGAGTA-TCAAAAAT----AA--C--CCTAGG-GATATCTAGATCCACCCTGA-CCAAAAGAACTC-AGAGAGTTATAAGAAAGAAAACGAACCTT--AGTTCTTGA-CTCGTGTAAGAGTGATAATT-TAACTGACCAG-GG--CTTTATATATGCCAACACA-TCCAATGAGGAAGACAGATAC-ATCTAAAAATAGAGAGGCTT-A-GAGACTATAA--TT-TTAACC-A--ATGAAA-TAAC-GGGGGAC-AAA-TTACGTTTGGAAA--GTATG-ACAA-TATGGCGGGGCGGA-T-AATGAAAATATCAG--ACC-AGGAAAA-GG-TAAA-CAAAATGTAAAATCG-A-AATTCTGACTT----AAT-ACGAAGATTGATA-ACC-AGGAAA-TAAATTACA-TAGAA--ACTATA---TTA-TATA--GATTACTCTGAA---GACCAAGTTTTTAGTAG--A-AATCA--ACATG-TAAAAGTCAAAATT
gi|20 : GAACAT-TCCATACA-CCT----------TG-GGCTTCTAA---AAATAGAAACAGGGATAGTTGAGTATT-AAAAAT----AACTC--CCTAGG-GATA
gi|21 : ---GACGAAGTTTT-GGTAT--A-AATCA--TCATG-TAAAAATCAAAATT
gi|22 : AGGCTT-TACTGGTTCTGA------AATTTACCCCAA-GTTCAgttaca
gi|3 : GGAAACCAGTATGCCAAAGGCTCCTACTGGTTCTGAAATTT-AATTTACCCCAA-GTT--AATATGGTGATT-CCTA-ACTAT-GGTCAA-ACCTTTATAAAAG--AAAAG-CTGTGAATAAATT-AA-TAATAGCATTTATG--TAACCAGAA--AAATAATGTCAAGTTCATAACAT-TAA-ACAAATA-TA--T--TTCAAAATATCACAGT----AGA-AGTATAATAATTCAAATAC-TAAAGCCCTG-AATAA-TTTAAT-AAATAT-AAAGCAGAAAG--AAAA-A-TC-AGGAGAAATAAA-C-TTAT-GTATTTTTAACTTAAAGGACCTGTCCATACA-CCTCT-ATAGATAAG-GGCTTCTAA---AAATAGAAACAGGGAA-----------------T--------C--CCTAGGCGATATCTAGATCCA-CCTGAAACAAAAGAACTCAAGATAGTTCTAAGAAAGAAA-CGAACCTTTAGGTTCTTGACCTCGTGTAAGAGTGATAATT-T-ACTGACCAG-GGGT-TTTATATAGGCAAACACAGTCAGATGAGGAA-GCAAAT-C-ATCT-AACATAGAGAGTCTT-AGGAGACTATAA--TT-TC-ACC-A--ATGAAA-TAAC--GGGAAC--AA-TTACGTTTGGAAA--GTATG-ACAATTATGG-GGGGT--A-T-AATGAAAACATCAG--A---AGCAAAA-GG-TAAA-T-AAATTAAAAATCG-C-AAATCTG-CTT----ATA-ATGAACATTAATT-AACAGAG-AA-TAAATTACA-TG-AA--ACTATA---TGACTATA--AGTGACTCTGAA---GACAAAGTTTTTAGTCT--ACAATCA--TGAAG-TAAAAATCAAA
gi|4 : acgGGGAACCAGTATG-----------------TTCTTAAATTT-A-----CCCCAA-GTTCAA-TATGGTGATT-CCTAGACTAT-GGTCAACACCTTTGTAAAAGTAAGAAGACTGTTG-TAAATT-AA-TGATAG-ATTTATTATTAACAAGAA-TAAATA-TGTCAAGTTGATAAAAATTAA-TAAA-TA-TATTT--C-CAAAATATCACATT----AGA-AGTATAATAATTGAAATAAATAAAGCTCTG-A-TAATTTTGAT-AAATGT-AAAGAGAAAAG--AAAA----A-GGAAGAAATAAA-C-T-AA-GTATTTTTAACTTAAAGAACC--TCCATA-A-CCATCTACAGATATA-GGCTTCTAAACTAAACAG---CATG--AAG-TGAGAA-T-AAAAATATACAA--C--C--ATG-GATATCTAGATTCATCCTGAACCAAAAGAA-TC-AGAGAGTTCTAAAAGAG-----GAACCTTTAGATTCTTGG-CTCGTGTAAGAGTGATAATTGTAACTGATCAACGGGCCTTTATATAT-CCATCA-----CAATGAGGAA-GCAAATACAATCTAAAAATAGAGAGGCTTCA-GAAACTATAAT-TT-TCAACCAA--ATGAAA-TATT-GGGGG---AAA-TTA-G-TTGGAAA--GT-TG-A-AA-CACGGC-GGGT--A-T-AATGAAACCATCAG--ACC-AGCAAAA--G-T-AA-C--AATGTAAAATCG-A-AATTCTGATTT----ATT-ATG-ATATTAACATACCAAGAACA-TAAATTACA-T--AA--ACTAAA---CGA-TATA-GAGTGA-TTGGAA---GACCAA---TTTAGTAA--T-AATTA--TTAAG-TAAAAATCAAAATTttgttaccac
gi|5 : tgtaaaGGGAACAAGTATGCCAAAGGCTC-TACTGGTTCTGAAATTTAAATTTACCCCAA-GTTCAAA-ATGGTGATT-CCTAGACTAT-GGTCAACACCTTTATAAAAGTAAGAAGACTGTGA-TAAATTAAA-TAATAG-ATTTATT-------------------TGTCAAGTTGATACCAATTAACAAAA-TA-TATTT--C-CAAATTATCACAGT----AGA-AGT---ATAATTTAAAgtaca
gi|6 : tttgatttatgtatctcagcagacaattctaattctaaactctaaaactcttgtatttttcttacaatttcatccatctctcgctcattgtcactgtgagattgatctaactgtacagtaggtttgactgagtccttaaaggttactttcctttctgaattaactgcagatgtacatgcagtgcccccattatgactaatggactttcttttctcatactcattcttcactctcgtagcatgctgttagttcctgaaactctctctctaattctctttcactcttactgtctgtttctttctcaagggctacaaaattatagtttgtcgagtcagaaaactcttgaccctgtgatctattgacattagttttaggcctagcacccttatctttaggtgtggatgtatggaaggggaataaaggtgatgccatggtttctatctgggaatcccgaggcgagccccccaaaatgtaacGGGAACC-GTATGCCAA-GGCTC-TACTGGTTCTGAAATTT-CCCCCCCCCCAAAGGTCAAATATGGTGATT-CCTAGACTATGGGTCAACACCTTTAT-AAAGTAAGAAGACTGTGA-TAAATT-AA-TGATAG-ATTTAATATTAGCAAGAA-TAGATA-TGTTAAGTTGATAACAA-TAA-AT-A-TA-TT--T--C-CAAAATATCACA-T----AAA-AGTAGAATAATTTAAATAAATAAAGCCATG-A-CAA-TTTAAT-AAATGTAAAAGAGAAAAG--AAAATATTA-GGGAGAAATAAA-C-TAATAGTATGTTT
gi|7 : gtaacAGAGAGGCTT-A-AAC-CTATGC--TTGTCAACC-AGGATGAAAATAAC-GGC--AC-AAAATTACGTTTGGAGAAGGTATGGACAA-TATGGCGGG-T--A-TTGATGAAAAC--CAGCAA-CTAGCAAAAAGG-TAAAAC-AAATGT--AACCGAA-AATTTTGACTT----AATCATGAGTATTAATA-ACCAAAGAAAGTAAATTACA-TGAAAAGACTATAAGCTGA-TATAGGGGTGACTCTG-A---GACCAA-TTTTT-GTATAGA-AATCATTTCAAGCTAAAAATCAAAATT
gi|8 : -TAACTGACCAA-GGGTCTATATATATGTCAACACA-TTCAATCAGAATGGCAAAGAC-ATATAAAAATAGAGAGGCTT-C-GAGACTATAT--TT-CCGACC-A--ATGAAA-TTAC-GGGGAAC-AAA-TTACGTTTGGAAA--GTATG-ACAA-AATGGC-GGGT--A-T---TAGGATTAT---------AGCAAAA-GG-TAAA-C-AAATGTAAAATCG-A-AATTCTAACTTTTAGAAT-AGGAATATTAATA-ACCAAATAAA-TAAATCAGA-TGAAA--TCTATA---TGA-TATA-GGGTGACTCTGAA---GACGAAgttgacacatgtatgca
gi|9 : CTATATCCATC-TGAACCAAATGAACTC-AGAGAGTTCTAAGAAA--AA-CGAACCTTTAGGTTCTTGA-CTCGTATCAGAGTGATAATC-TAATTTACC---------------ATGCC------------TGA---AGGCAAAAAC-ATCTAAAAATAGAGAGGCTT-A-GAGTCTATAA--TT-TCAACC-A--ATGAAA-TAAC-GGGGAAC-AAA-TTACGTTCGGAAA--GTATG-ACAA-TATGGC-GGGT--A-T-AATGAAAC----------T-AACAAAA-GG-TAAA-T-AA-------------------TGA---------------ATATTAATA-ACCAAAGAAA-TAAATTACA-TGAAA--ACTACA---
Alignments
lowQualScore : 1 1 1 1 11 1 1 1 1111111 1111 111111 111 2222 1 111 999999999999999999999999999 1 11111 11 1 4444444444444 1 1111 11 1
lowQualScore : 0 1 1 5 1 3 5 55 6 6 6 6 7 1 1 5 5 2 0 9 55 3 77 0 5 666 0 5 5555555 0000 5 1 5 5 5 5 5 66 888888 5 222 5 5 5 3333 0 1 000 8 444444444444444444444444444 99 6 3 2 0 55555 3 8 6 6 666 888 1 1 6 6 1 999 00 4 4 55 4 4 1 4 4 66 4 1 4 7 1 66 4 4 0 7777777777777 4 4 4 0 77 777 1 0000 0 5 0 5 3 5 5 8 66 8888 5 00 888 1 8 9 8888 77 1 5
lowQualScore : . . . . . . . .. . . . . . . . . . . . . .. . .. . . ... . . ....... .... . . . . . . . .. ...... . ... . . . .... . . ... . ........................... .. . . . . ..... . . . . ... ... . . . . . ... .. . . .. . . . . . .. . . . . . .. . . . ............. . . . . .. ... . .... . . . . . . . . .. .... . .. ... . . . .... .. . .
lowQualScore : 1 4 4 7 4 6 7 66 7 7 7 7 3 3 4 0 0 2 0 4 11 0 22 0 0 555 0 0 6666666 6666 0 4 7 7 0 7 0 99 666666 0 111 0 7 7 9999 7 4 000 7 222222222222222222222222222 22 7 7 5 0 88888 2 0 7 7 555 222 0 0 7 7 4 777 66 0 0 55 4 4 1 4 4 11 4 1 4 8 1 11 4 4 1 0000000000000 4 4 4 0 22 000 4 6666 5 0 1 0 2 0 0 1 99 9999 7 00 888 0 6 3 3333 99 0 7
consensus : GGGAACCAGTATGCCAAAGGCTC-TACTGGTTCTGAAATTT-AATTTACCCCAA-GTTCAAATATGGTGATT-CCTAGACTAT-GGTCAACACCTTTATAAAAGTAAGAAGACTGTGA-TAAATT-AA-TGATAG-ATTTATTATTAACAAGAA-TAAATA-TGTCAAGTTGATAACAA-TAA-ANAA-TA-TA--T--C-CAAAATATCACAGT----AGA-AGTATAATAATTTAAATAAATAAAGCCCTG-A-TAA-TTTAAT-AAATGT-AAAGAGAAAAG--AAAA-A-TA-GGGAGAAATAAA-C-T-AT-GTATTTTTAACTTAAAGAACCT-TCCATACA-CCTCTTATAGATATA-GGCTTCTAA---AAATAGAAACAGGGAAAGTTGAG-A-T-AAAAAT----AA--C--CCTAGG-GATATCTAGATCCACCCTGAACCAAAAGAACTC-AGAGAGTTCTAAGAAAGAAA-CGAACCTTTAGGTTCTTGA-CTCGTGTAAGAGTGATAATT-TAACTGACCAA-GGGTCTTTATATATGCCAACACA-TCCAATGAGGAAGGCAAATAC-ATCTAAAAATAGAGAGGCTT-A-GAGACTATAA--TT-TCAACC-A--ATGAAA-TAAC-GGGGAAC-AAA-TTACGTTTGGAAA--GTATG-ACAA-TATGGCGGGGT--A-T-AATGAAANCATCAG--A-C-AGCAAAA-GG-TAAA-C-AAATGTAAAATCG-A-AATTCTGACTT----AAT-ATGAATATTAATA-ACCAAAGAAA-TAAATTACA-TGAAA--ACTATA---TGA-TATA-GGGTGACTCTGAA---GACNAAGTTTTTAGTAT--A-AATCA--TCANG-TAAAAATCAAAATT
Reference ( family-3788 ) : GGGAACCAGTATGCCAAAGGCTC-TACTGGTTCTGAAATTT-AATTTACCCCAA-GTTCAAATATGGTGATT-CCTAGACTAT-GGTCAACACCTTTATAAAAGTAAGAAGACTGTGA-TAAATT-AA-TGATAG-ATTTATTATTAACAAGAA-TAAATA-TGTCAAGTTGATAACAA-TAA-ANAA-TA-TA--T--C-CAAAATATCACAGT----AGA-AGTATAATAATTTAAATAAATAAAGCCCTG-A-TAA-TTTAAT-AAATGT-AAAGAGAAAAG--AAAA-A-TA-GGGAGAAATAAA-C-T-AT-GTATTTTTAACTTAAAGAACCT-TCCATACA-CCTCTTATAGATATA-GGCTTCTAA---AAATAGAAACAGGGAAAGTTGAG-A-T-AAAAAT----AA--C--CCTAGG-GATATCTAGATCCACCCTGAACCAAAAGAACTC-AGAGAGTTCTAAGAAAGAAA-CGAACCTTTAGGTTCTTGA-CTCGTGTAAGAGTGATAATT-TAACTGACCAA-GGGTCTTTATATATGCCAACACA-TCCAATGAGGAAGGCAAATAC-ATCTAAAAATAGAGAGGCTT-A-GAGACTATAA--TT-TCAACC-A--ATGAAA-TAAC-GGGGAAC-AAA-TTACGTTTGGAAA--GTATG-ACAA-TATGGCGGGGT--A-T-AATGAAANCATCAG--A-C-AGCAAAA-GG-TAAA-C-AAATGTAAAATCG-A-AATTCTGACTT----AAT-ATGAATATTAATA-ACCAAAGAAA-TAAATTACA-TGAAA--ACTATA---TGA-TATA-GGGTGACTCTGAA---GACNAAGTTTTTAGTAT--A-AATCA--TCANG-TAAAAATCAAAATT
gi|1 : GGAAACCAGTATGCCAAAGGCTCCTACTGGTTCTGAAATTT-AATTTACCCCAA-GTT--AATATGGTGATT-CCTA-ACTAT-GGTCAA-ACCTTTATAAAAG--AAAAG-CTGTGAATAAATT-AA-TAATAGCATTTATG--TAACCAGAA--AAATAATGTCAAGTTCATAACAT-TAA-ACAAATA-TA--T--TTCAAAATATCACAGT----AGA-AGTATAATAATTCAAAT-ACTAAAGCCCTGAA-TAA-TTTAAT-AAATAT-AAAGCAGAAAG--AAAA-A-TC-AGGAGAAATAAA-CTT-AT-GTATTTTTAACT
gi|10 : tttgaatttctgtatctcaagcgcacaattctaattctaaactctctaattctttgtatttttttttttaaaatttccaattccatctctcgcctcaatatgtcatgtgagatttgaagtttctaactgtcagtagtgtttgactgagtcctttaaaggctactttcctttccttgaattaaactgcagatctacatgccagtgccctcatatgactaatggactttcttttctcatactcatatcttcactctctcgtagcatgctgttgttcctgaactctctctctattcttctttcactctacctgttctgttttttctttctcagggcgcttccaaaattagtgtggtcgaagtcataaaaccttgaccctgacaatcgtaattggttagaagttttaaggcctatcaaaacaggatctttaagggtgtggatgtcatggaaaggggataaagcagcgtgatgccatggtttcttatctaggaatcaccgaggcgagcccccaaaaaatgtaacgTAAAATTAGAGAGGCTT-C-GAGATTATAA--TT-TCAACC-A--ATGAAA-CTAC-TGGGAACGAAA-TT-CGTTTGGAAA--GTATG-ACAA-AATGGCGGG-T--A-T-AA--------------------------GG-TTAG-C-AAATGTGAAATCG-A-AATTCTCACTC----GAT-ATGAATATTGATA-ACCAAAGAAA-TGAATCATA-TGAAA--ACTGTA---TTA-TATA-GGATGACTCTGAATTTGA-AAA---TTTGGTAT--A-AATCT--ACATG-TAAAAA
gi|11 : TAGAGAGGCTT-ATGAGACTATGGCTTT-TCAACC-A--ATGAAA-TAACGGGGGAAC-AAA-TTACGTTTGGAAA--GTATG-A-AA-TATGGC-GGGT--ATT-ACTGAAAACAACAG--A-C-AGCAAAA-GGTTAAA-CTAAATG-GGTACCG-ATAATT-TGACTT----AAT-ATGAGTATTAATA-ACCAAAG-AA-T-AATTACATTG--A--ACTATA----GA-TATA-GGGTGACTCTGAA---GACCAA-TTTTT-GTAT--A-AATCA--TCAAG-TAAAAATCAAAATTattgctacnaaaatttggtataaatctacatgtaaaaa
gi|12 : -AA-T-ATAT-ATATATTATTA-CAAGAAATAAATA-TGTCAAGTTGATAACAA-TTG-ATAA-TAGTT--T--C-CAAAATATCACAGT----AGGCAGTATAATAATTTAAATAAAT-AAGCCCTG-A-TAA-TTTAATAAAATGT-AAAGAGAAAAG--AAA----------AGAACTAGGCC-T-AT-GTATTTTTGACTTAAAGgttac
gi|13 : -TTTA-T-AAATAT-AAAGAGAAAAGGAAAAA-A-TAAGGGAGAAACAAA-C-T-AT-GTATTTTTAACTTAAAGAACCT-TCTATACA--CTC-TATAGATATAGGGCTTCT-A---AAATAGAAACAGGGA-----------------------CA--C--CCTAGG-GATATCTAGATCCACCCTGAACCAAAAGAA
gi|14 : -TCAACC-A--ATGAAA-TAAC-GGG-AAC-AAA-TTACGTCTTGAAA--GTATG-ACAA-TATGGC--GGT--A-G-AGT---AGCA-------------AAAA-GG-TAAA-
gi|15 : tgaagattaaaaaaaatcaacataaattacataaaactgTGTGA-TAAATT-AAATGATAG-ATTTATTATT----------------TGTCAAGTTGATAACAAGTAA-TAAA-TA-TA--TTTC-CAAAATATCACAGTCAGTAGA-AGTATAAAAATTTAAATAAATAAAGCCCTG-A-TAA-TTTAttaagctggccattaatgatacaaagtatgctttta
gi|16 : GGGAACCAGTATGCCAAA
gi|17 : tcaagtttgaatgtatggaaagggaacaaaggtgatgcatgcatggtttctatctaggaatcccgagacgagcccccaaaaaagtaac-CTTGTGTAAGAGTGATAATC-TAACTGACCAA-GAGTCTTTATAT-TGCCAACACA-TCCAATGAAAAAGGCAAATAC-ATC--------------CTT-A-GAGACTATAA--TT-TCAACC-A--ATGAA
gi|18 : TAACTTGAAGAATCT-TCCATACA-CCTCT-AGAGATATAAGGCTTCTAA---AA-TAGAAACAGGGAAAGT-------------AT----AA--CATCCTAGG-GATATCTAGATCCACCCTGAACCA
gi|19 : TAT-AAAGAGAAAAG--AAAA-T-AA-GGGAGCGATAAA-C----T-GTATTTTTAACAAAAACAACCT-TCCATACA-CGTC--A-AGAAACA-----TCTAA---AATTAGAGA
gi|2 : GGGAACCAGTATGCCAAAGGCTC-TACTGATTCTAAAA-----ATT-ACCCCAA-GTTCCAATATG-TGATTTCCTAGACTAT-GGTCAACACCTTTATAAAAGTAAGAA--CTATGA-TAGATA-AA-TGATAG-ATTTATTATTAACAAAAA-GAAATA-TGTCGAGTTGATAACAA-TAA-CCAA-TC-TA--T--C-CAAAATATCACAGT----AGA-AGTATAATAATTTAAA-AAAGAGAGGCCTG-A-TAC-TTTAAT-AAATGT-AAAGAAAAAAG--AAAA-A-TA-GGGAGATATAAA-C-T-AT-GTATTTTTAACTTAAAGAACCT-TCCATACAACCTCTTATA-ATATA-GGCTTCTAA---AA-TAGAACCAGGGAAAGTTGAGTA-TCAAAAAT----AA--C--CCTAGG-GATATCTAGATCCACCCTGA-CCAAAAGAACTC-AGAGAGTTATAAGAAAGAAAACGAACCTT--AGTTCTTGA-CTCGTGTAAGAGTGATAATT-TAACTGACCAG-GG--CTTTATATATGCCAACACA-TCCAATGAGGAAGACAGATAC-ATCTAAAAATAGAGAGGCTT-A-GAGACTATAA--TT-TTAACC-A--ATGAAA-TAAC-GGGGGAC-AAA-TTACGTTTGGAAA--GTATG-ACAA-TATGGCGGGGCGGA-T-AATGAAAATATCAG--ACC-AGGAAAA-GG-TAAA-CAAAATGTAAAATCG-A-AATTCTGACTT----AAT-ACGAAGATTGATA-ACC-AGGAAA-TAAATTACA-TAGAA--ACTATA---TTA-TATA--GATTACTCTGAA---GACCAAGTTTTTAGTAG--A-AATCA--ACATG-TAAAAGTCAAAATT
gi|20 : GAACAT-TCCATACA-CCT----------TG-GGCTTCTAA---AAATAGAAACAGGGATAGTTGAGTATT-AAAAAT----AACTC--CCTAGG-GATA
gi|21 : ---GACGAAGTTTT-GGTAT--A-AATCA--TCATG-TAAAAATCAAAATT
gi|22 : AGGCTT-TACTGGTTCTGA------AATTTACCCCAA-GTTCAgttaca
gi|3 : GGAAACCAGTATGCCAAAGGCTCCTACTGGTTCTGAAATTT-AATTTACCCCAA-GTT--AATATGGTGATT-CCTA-ACTAT-GGTCAA-ACCTTTATAAAAG--AAAAG-CTGTGAATAAATT-AA-TAATAGCATTTATG--TAACCAGAA--AAATAATGTCAAGTTCATAACAT-TAA-ACAAATA-TA--T--TTCAAAATATCACAGT----AGA-AGTATAATAATTCAAATAC-TAAAGCCCTG-AATAA-TTTAAT-AAATAT-AAAGCAGAAAG--AAAA-A-TC-AGGAGAAATAAA-C-TTAT-GTATTTTTAACTTAAAGGACCTGTCCATACA-CCTCT-ATAGATAAG-GGCTTCTAA---AAATAGAAACAGGGAA-----------------T--------C--CCTAGGCGATATCTAGATCCA-CCTGAAACAAAAGAACTCAAGATAGTTCTAAGAAAGAAA-CGAACCTTTAGGTTCTTGACCTCGTGTAAGAGTGATAATT-T-ACTGACCAG-GGGT-TTTATATAGGCAAACACAGTCAGATGAGGAA-GCAAAT-C-ATCT-AACATAGAGAGTCTT-AGGAGACTATAA--TT-TC-ACC-A--ATGAAA-TAAC--GGGAAC--AA-TTACGTTTGGAAA--GTATG-ACAATTATGG-GGGGT--A-T-AATGAAAACATCAG--A---AGCAAAA-GG-TAAA-T-AAATTAAAAATCG-C-AAATCTG-CTT----ATA-ATGAACATTAATT-AACAGAG-AA-TAAATTACA-TG-AA--ACTATA---TGACTATA--AGTGACTCTGAA---GACAAAGTTTTTAGTCT--ACAATCA--TGAAG-TAAAAATCAAA
gi|4 : acgGGGAACCAGTATG-----------------TTCTTAAATTT-A-----CCCCAA-GTTCAA-TATGGTGATT-CCTAGACTAT-GGTCAACACCTTTGTAAAAGTAAGAAGACTGTTG-TAAATT-AA-TGATAG-ATTTATTATTAACAAGAA-TAAATA-TGTCAAGTTGATAAAAATTAA-TAAA-TA-TATTT--C-CAAAATATCACATT----AGA-AGTATAATAATTGAAATAAATAAAGCTCTG-A-TAATTTTGAT-AAATGT-AAAGAGAAAAG--AAAA----A-GGAAGAAATAAA-C-T-AA-GTATTTTTAACTTAAAGAACC--TCCATA-A-CCATCTACAGATATA-GGCTTCTAAACTAAACAG---CATG--AAG-TGAGAA-T-AAAAATATACAA--C--C--ATG-GATATCTAGATTCATCCTGAACCAAAAGAA-TC-AGAGAGTTCTAAAAGAG-----GAACCTTTAGATTCTTGG-CTCGTGTAAGAGTGATAATTGTAACTGATCAACGGGCCTTTATATAT-CCATCA-----CAATGAGGAA-GCAAATACAATCTAAAAATAGAGAGGCTTCA-GAAACTATAAT-TT-TCAACCAA--ATGAAA-TATT-GGGGG---AAA-TTA-G-TTGGAAA--GT-TG-A-AA-CACGGC-GGGT--A-T-AATGAAACCATCAG--ACC-AGCAAAA--G-T-AA-C--AATGTAAAATCG-A-AATTCTGATTT----ATT-ATG-ATATTAACATACCAAGAACA-TAAATTACA-T--AA--ACTAAA---CGA-TATA-GAGTGA-TTGGAA---GACCAA---TTTAGTAA--T-AATTA--TTAAG-TAAAAATCAAAATTttgttaccac
gi|5 : tgtaaaGGGAACAAGTATGCCAAAGGCTC-TACTGGTTCTGAAATTTAAATTTACCCCAA-GTTCAAA-ATGGTGATT-CCTAGACTAT-GGTCAACACCTTTATAAAAGTAAGAAGACTGTGA-TAAATTAAA-TAATAG-ATTTATT-------------------TGTCAAGTTGATACCAATTAACAAAA-TA-TATTT--C-CAAATTATCACAGT----AGA-AGT---ATAATTTAAAgtaca
gi|6 : tttgatttatgtatctcagcagacaattctaattctaaactctaaaactcttgtatttttcttacaatttcatccatctctcgctcattgtcactgtgagattgatctaactgtacagtaggtttgactgagtccttaaaggttactttcctttctgaattaactgcagatgtacatgcagtgcccccattatgactaatggactttcttttctcatactcattcttcactctcgtagcatgctgttagttcctgaaactctctctctaattctctttcactcttactgtctgtttctttctcaagggctacaaaattatagtttgtcgagtcagaaaactcttgaccctgtgatctattgacattagttttaggcctagcacccttatctttaggtgtggatgtatggaaggggaataaaggtgatgccatggtttctatctgggaatcccgaggcgagccccccaaaatgtaacGGGAACC-GTATGCCAA-GGCTC-TACTGGTTCTGAAATTT-CCCCCCCCCCAAAGGTCAAATATGGTGATT-CCTAGACTATGGGTCAACACCTTTAT-AAAGTAAGAAGACTGTGA-TAAATT-AA-TGATAG-ATTTAATATTAGCAAGAA-TAGATA-TGTTAAGTTGATAACAA-TAA-AT-A-TA-TT--T--C-CAAAATATCACA-T----AAA-AGTAGAATAATTTAAATAAATAAAGCCATG-A-CAA-TTTAAT-AAATGTAAAAGAGAAAAG--AAAATATTA-GGGAGAAATAAA-C-TAATAGTATGTTT
gi|7 : gtaacAGAGAGGCTT-A-AAC-CTATGC--TTGTCAACC-AGGATGAAAATAAC-GGC--AC-AAAATTACGTTTGGAGAAGGTATGGACAA-TATGGCGGG-T--A-TTGATGAAAAC--CAGCAA-CTAGCAAAAAGG-TAAAAC-AAATGT--AACCGAA-AATTTTGACTT----AATCATGAGTATTAATA-ACCAAAGAAAGTAAATTACA-TGAAAAGACTATAAGCTGA-TATAGGGGTGACTCTG-A---GACCAA-TTTTT-GTATAGA-AATCATTTCAAGCTAAAAATCAAAATT
gi|8 : -TAACTGACCAA-GGGTCTATATATATGTCAACACA-TTCAATCAGAATGGCAAAGAC-ATATAAAAATAGAGAGGCTT-C-GAGACTATAT--TT-CCGACC-A--ATGAAA-TTAC-GGGGAAC-AAA-TTACGTTTGGAAA--GTATG-ACAA-AATGGC-GGGT--A-T---TAGGATTAT---------AGCAAAA-GG-TAAA-C-AAATGTAAAATCG-A-AATTCTAACTTTTAGAAT-AGGAATATTAATA-ACCAAATAAA-TAAATCAGA-TGAAA--TCTATA---TGA-TATA-GGGTGACTCTGAA---GACGAAgttgacacatgtatgca
gi|9 : CTATATCCATC-TGAACCAAATGAACTC-AGAGAGTTCTAAGAAA--AA-CGAACCTTTAGGTTCTTGA-CTCGTATCAGAGTGATAATC-TAATTTACC---------------ATGCC------------TGA---AGGCAAAAAC-ATCTAAAAATAGAGAGGCTT-A-GAGTCTATAA--TT-TCAACC-A--ATGAAA-TAAC-GGGGAAC-AAA-TTACGTTCGGAAA--GTATG-ACAA-TATGGC-GGGT--A-T-AATGAAAC----------T-AACAAAA-GG-TAAA-T-AA-------------------TGA---------------ATATTAATA-ACCAAAGAAA-TAAATTACA-TGAAA--ACTACA---
blockSeqs : C T A A T A CC T G G C T A A A A G C A AA A AT A G CAA A G TTTC CAGT C A . A T A A GA TATTA C TT A G A TTAT A ACT T TAGTTGAGTATTAAAAATAACT AT C C C A GAAA T C G C GCC CAG C G G A A AT CT G A GG A G G . A AG G C T G G GG T T ATATCAGACC A T A T TA AT C TTAG C T A G T G AG AGCT C GG . C G A AGA TT A C
blockSeqs : . T . A T . CA . G . C T A . . . G . A AA A G . T AT . . TTTC . . A . . . . . . ATAA . TA . . . CTAC . . A AAGTGAGAATAAAAATATACAA . . C C . AA T . . . GTC CA C G G . A AG T . . . . . G . . . . C . G G . . . CCATCAGACC . . . A AA AA C . . . A . . A . T . G . C G G AC . T .
blockSeqs : . T . A T . CA . G . C T A . . . A . A AA C T . T TA . . TTTC . . A . . . . . . TAA . T . . . TAG . . A AAGTTGAGTATCAAAAATAA . . T . . G T . . . GT CA T G G . A CA . . . . . . G . . . . C . G G . . . ACCAGCAACT . . . . TA A C . . . A . . A . T . G . G G A A . T .
blockSeqs : . T . A C . CA . G . C T . . . . G . A AG A T . . CC . . TTT . . A . . . . . . ATA . T . . . TAT . . A AAGTATAA . . T . . . C . . G . . A A . . . . . . G . . . . C . . G . . . ACAACAGAC . . . . TA C T . . . A . . A . C . G . A . A A . A .
blockSeqs : . . . C . . CA . . . . . . . . . A . A A A . . . AC . . TC . . A . . . . . . ATC . T . . . A . . . AT . . . . . . . . . . . . A . . . . . . G . . . . C . . G . . . ACATCAGA . . . . G A C . . . A . . . . T . . . C . . A . A .
blockSeqs : . . . . . . . . . . G . . . . . . . TA . . TC . . . . . . . . . A . T . . . . . . . . A . . . . . . G . . . . C . . G . . . TTAT . . . . T A . . . . . . . . . . . . . C . . T . A .
blockSeqs : . . . . . . . . . . AT . . TC . . . . . . . . . C . . . . . . . . . . . . . . G . . . GCA . . . . . . . . . . . . . . . . G
blockSeqs : A . . . . . . . . . . . . . . . . . . CT . . .
blockSeqs : . . .
blockSeqCons : CA ** TTTC*** T** TA** AAGTGAGATAAAAATAA********** CA* NCATCAGACC*** ***
originalCons : GGGAACCAGTATGCCAAAGGCTC-TACTGGTTCTGAAATTT-AATTTACCCCAA-GTTCAAATATGGTGATT-CCTAGACTAT-GGTCAACACCTTTATAAAAGTAAGAAGACTGTGA-TAAATT-AA-TGATAG-ATTTATTATTAACAAGAA-TAAATA-TGTCAAGTTGATAACAA-TAA-ANAA-TA-TA--T--C-CAAAATATCACAGT----AGA-AGTATAATAATTTAAATAAATAAAGCCCTG-A-TAA-TTTAAT-AAATGT-AAAGAGAAAAG--AAAA-A-TA-GGGAGAAATAAA-C-T-AT-GTATTTTTAACTTAAAGAACCT-TCCATACA-CCTCTTATAGATATA-GGCTTCTAA---AAATAGAAACAGGGAAAGTTGAG-A-T-AAAAAT----AA--C--CCTAGG-GATATCTAGATCCACCCTGAACCAAAAGAACTC-AGAGAGTTCTAAGAAAGAAA-CGAACCTTTAGGTTCTTGA-CTCGTGTAAGAGTGATAATT-TAACTGACCAA-GGGTCTTTATATATGCCAACACA-TCCAATGAGGAAGGCAAATAC-ATCTAAAAATAGAGAGGCTT-A-GAGACTATAA--TT-TCAACC-A--ATGAAA-TAAC-GGGGAAC-AAA-TTACGTTTGGAAA--GTATG-ACAA-TATGGCGGGGT--A-T-AATGAAANCATCAG--A-C-AGCAAAA-GG-TAAA-C-AAATGTAAAATCG-A-AATTCTGACTT----AAT-ATGAATATTAATA-ACCAAAGAAA-TAAATTACA-TGAAA--ACTATA---TGA-TATA-GGGTGACTCTGAA---GACNAAGTTTTTAGTAT--A-AATCA--TCANG-TAAAAATCAAAATT
finalCons : GGGAACCAGTATGCCAAAGGCTC-TACTGGTTCTGAAATTT-AATTTACCCCAA-GTTCAAATATGGTGATT-CCTAGACTAT-GGTCAACACCTTTATAAAAGTAAGAAGACTGTGA-TAAATT-AA-TGATAG-ATTTATTATTAACAAGAA--AAATA-TGTCAAGTTGATAACAA-TAA-ANAA-TA-TATTTC---CAAAATATCACAGT----AGA-AGTATAATAATTTAAATAAATAAAGCCCTG-A-TAA-TTTAAT-AAATGT-AAAGAGAAAAG--AAAA-A-TA-GGGAGAAATAAA-CT--AT-GTATTTTTAACTTAAAGAACCT-TCCATACA-CCTCTA--AGATATA-GGCTTCTAA---AAATAGAAACAGGGAAAGTGAGATAAAAATAA----------C--CCTAGG-GATATCTAGATCCACCCTGAACCAAAAGAACTC-AGAGAGTTCTAAGAAAGAAA-CGAACCTTTAGGTTCTTGA-CTCGTGTAAGAGTGATAATT-TAACTGACCAA-GGGTCTTTATATATGCCAACACA-TCCAATGAGGAAGGCAAATAC-ATCTAAAAATAGAGAGGCTT-A-GAGACTATAA--TT-TCAACC-A--ATGAAA-TAAC-GGGGAAC-AAA-TTACGTTTGGAAA--GTATG-ACAA-TATGGCGGGGT--A-T-AATGAAANCATCAGACC---AGCAAAA-GG-TAAA-C-AAATGTAAAATCG-A-AATTCTGACTT----AAT-ATGAATATTAATA-ACCAAAGAAA-TAAATTACA-TGAAA--ACTATA---TGA-TATA-GGGTGACTCTGAA---GACNAAGTTTTTAGTAT--A-AATCA--TCANG-TAAAAATCAAAATT
Alignments
lowQualScore : 1 1 1 1 1111 1 1 111 1 1111 111111 111 222 1 111 9999999999999999999999999999 1 11111 11 1 2222222222222 1 1111 11 1
lowQualScore : 0 1 1 5 1 3 5 55 6 6 6 6 7 1 1 5 5 2 0 9 55 3 8888 0 5 111 0 2 0000 5 1 5 5 5 5 5 66 888888 5 222 5 5 5 5 1 333 1 000 8 6666666666666666666666666666 99 6 3 2 0 55555 3 8 6 6 666 888 1 1 6 6 1 999 00 4 4 55 4 4 1 4 4 66 4 1 4 2 2 66 5 5 9999999999999 5 5 0 5 0 77 777 1 0000 0 5 0 5 3 5 5 8 66 8888 5 00 888 1 8 9 8888 77 1 5
lowQualScore : . . . . . . . .. . . . . . . . . . . . . .. . .... . . ... . . .... . . . . . . . .. ...... . ... . . . . . ... . ... . ............................ .. . . . . ..... . . . . ... ... . . . . . ... .. . . .. . . . . . .. . . . . . .. . . ............. . . . . . .. ... . .... . . . . . . . . .. .... . .. ... . . . .... .. . .
lowQualScore : 1 4 4 7 4 6 7 66 7 7 7 7 3 3 4 0 0 2 0 4 11 0 9999 0 0 222 0 5 6666 0 4 7 7 0 7 0 99 666666 0 111 0 7 7 7 4 000 4 000 7 3333333333333333333333333333 22 7 7 5 0 88888 2 0 7 7 555 222 0 0 7 7 4 777 66 0 0 55 4 4 1 4 4 11 4 1 4 2 5 99 0 0 1111111111111 0 0 4 0 0 22 000 4 6666 5 0 1 0 2 0 0 1 99 9999 7 00 888 0 6 3 3333 99 0 7
consensus : GGGAACCAGTATGCCAAAGGCTC-TACTGGTTCTGAAATTT-AATTTACCCCAA-GTTCAAATATGGTGATT-CCTAGACTAT-GGTCAACACCTTTATAAAAGTAAGAAGACTGTGA-TAAATT-AA-TGATAG-ATTTATTATTAACAAGAA-A--AATA-TGTCAAGTTGATAACAA-TAA-ANAA-TATATTTCCAAAATATCACAGT----AGA-AGTATAATAATTTAAATAAATAAAGCCCTG-A-TAA-TTTAAT-AAATGT-AAAGAGAAAAG--AAAA-A-TA-GGGAGAAATAAA-C-T-AT-GTATTTTTAACTTAAAGAACCT-TCCATACA-CC-TCTA-A-GATATA-GGCTTCTAA---AAATAGAAACAGGGAAAG-T-GAG-A-T-AAAAAT----AA--C--CCTAGG-GATATCTAGATCCACCCTGAACCAAAAGAACTC-AGAGAGTTCTAAGAAAGAAA-CGAACCTTTAGGTTCTTGA-CTCGTGTAAGAGTGATAATT-TAACTGACCAA-GGGTCTTTATATATGCCAACACA-TCCAATGAGGAAGGCAAATAC-ATCTAAAAATAGAGAGGCTT-A-GAGACTATAA--TT-TCAACC-A--ATGAAA-TAAC-GGGGAAC-AAA-TTACGTTTGGAAA--GTATG-ACAA-TATGGCGGGGT--A-T-AATGAAAACATCAG--ACCAGCAAAA-GG-TAAA-C-AAATGTAAAATCG-A-AATTCTGACTT----AAT-ATGAATATTAATA-ACCAAAGAAA-TAAATTACA-TGAAA--ACTATA---TGA-TATA-GGGTGACTCTGAA---GACNAAGTTTTTAGTAT--A-AATCA--TCANG-TAAAAATCAAAATT
Reference ( family-3788 ) : GGGAACCAGTATGCCAAAGGCTC-TACTGGTTCTGAAATTT-AATTTACCCCAA-GTTCAAATATGGTGATT-CCTAGACTAT-GGTCAACACCTTTATAAAAGTAAGAAGACTGTGA-TAAATT-AA-TGATAG-ATTTATTATTAACAAGAA-A--AATA-TGTCAAGTTGATAACAA-TAA-ANAA-TATATTTCCAAAATATCACAGT----AGA-AGTATAATAATTTAAATAAATAAAGCCCTG-A-TAA-TTTAAT-AAATGT-AAAGAGAAAAG--AAAA-A-TA-GGGAGAAATAAA-C-T-AT-GTATTTTTAACTTAAAGAACCT-TCCATACA-CC-TCTA-A-GATATA-GGCTTCTAA---AAATAGAAACAGGGAAAG-T-GAG-A-T-AAAAAT----AA--C--CCTAGG-GATATCTAGATCCACCCTGAACCAAAAGAACTC-AGAGAGTTCTAAGAAAGAAA-CGAACCTTTAGGTTCTTGA-CTCGTGTAAGAGTGATAATT-TAACTGACCAA-GGGTCTTTATATATGCCAACACA-TCCAATGAGGAAGGCAAATAC-ATCTAAAAATAGAGAGGCTT-A-GAGACTATAA--TT-TCAACC-A--ATGAAA-TAAC-GGGGAAC-AAA-TTACGTTTGGAAA--GTATG-ACAA-TATGGCGGGGT--A-T-AATGAAANCATCAG--ACCAGCAAAA-GG-TAAA-C-AAATGTAAAATCG-A-AATTCTGACTT----AAT-ATGAATATTAATA-ACCAAAGAAA-TAAATTACA-TGAAA--ACTATA---TGA-TATA-GGGTGACTCTGAA---GACNAAGTTTTTAGTAT--A-AATCA--TCANG-TAAAAATCAAAATT
gi|1 : GGAAACCAGTATGCCAAAGGCTCCTACTGGTTCTGAAATTT-AATTTACCCCAA-GTT--AATATGGTGATT-CCTA-ACTAT-GGTCAA-ACCTTTATAAAAG--AAAAG-CTGTGAATAAATT-AA-TAATAGCATTTATG--TAACCAGAA-A--AATAATGTCAAGTTCATAACAT-TAA-ACAAATATATTTC-AAAATATCACAGT----AGA-AGTATAATAATTCAAAT-ACTAAAGCCCTGAA-TAA-TTTAAT-AAATAT-AAAGCAGAAAG--AAAA-A-TC-AGGAGAAATAAA-CTT-AT-GTATTTTTAACT
gi|10 : tttgaatttctgtatctcaagcgcacaattctaattctaaactctctaattctttgtatttttttttttaaaatttccaattccatctctcgcctcaatatgtcatgtgagatttgaagtttctaactgtcagtagtgtttgactgagtcctttaaaggctactttcctttccttgaattaaactgcagatctacatgccagtgccctcatatgactaatggactttcttttctcatactcatatcttcactctctcgtagcatgctgttgttcctgaactctctctctattcttctttcactctacctgttctgttttttctttctcagggcgcttccaaaattagtgtggtcgaagtcataaaaccttgaccctgacaatcgtaattggttagaagttttaaggcctatcaaaacaggatctttaagggtgtggatgtcatggaaaggggataaagcagcgtgatgccatggtttcttatctaggaatcaccgaggcgagcccccaaaaaatgtaacgTAAAATTAGAGAGGCTT-C-GAGATTATAA--TT-TCAACC-A--ATGAAA-CTAC-TGGGAACGAAA-TT-CGTTTGGAAA--GTATG-ACAA-AATGGCGGG-T--A-T-AA-------------------------GG-TTAG-C-AAATGTGAAATCG-A-AATTCTCACTC----GAT-ATGAATATTGATA-ACCAAAGAAA-TGAATCATA-TGAAA--ACTGTA---TTA-TATA-GGATGACTCTGAATTTGA-AAA---TTTGGTAT--A-AATCT--ACATG-TAAAAA
gi|11 : TAGAGAGGCTT-ATGAGACTATGGCTTT-TCAACC-A--ATGAAA-TAACGGGGGAAC-AAA-TTACGTTTGGAAA--GTATG-A-AA-TATGGC-GGGT--ATT-ACTGAAAACAACAG--A-CAGCAAAA-GGTTAAA-CTAAATG-GGTACCG-ATAATT-TGACTT----AAT-ATGAGTATTAATA-ACCAAAG-AA-T-AATTACATTG--A--ACTATA----GA-TATA-GGGTGACTCTGAA---GACCAA-TTTTT-GTAT--A-AATCA--TCAAG-TAAAAATCAAAATTattgctacnaaaatttggtataaatctacatgtaaaaa
gi|12 : -AA-T-ATAT-ATATATTATTA-CAAGAA-ATAAATA-TGTCAAGTTGATAACAA-TTG-ATAA-TA-GTTTCCAAAATATCACAGT----AGGCAGTATAATAATTTAAATAAAT-AAGCCCTG-A-TAA-TTTAATAAAATGT-AAAGAGAAAAG--AAA----------AGAACTAGGCC-T-AT-GTATTTTTGACTTAAAGgttac
gi|13 : -TTTA-T-AAATAT-AAAGAGAAAAGGAAAAA-A-TAAGGGAGAAACAAA-C-T-AT-GTATTTTTAACTTAAAGAACCT-TCTATACA--C-TCTATA-GATATAGGGCTTCT-A---AAATAGAAACAGGGA------------------------CA--C--CCTAGG-GATATCTAGATCCACCCTGAACCAAAAGAA
gi|14 : -TCAACC-A--ATGAAA-TAAC-GGG-AAC-AAA-TTACGTCTTGAAA--GTATG-ACAA-TATGGCGG
gi|15 : tgaagattaaaaaaaatcaacataaattacataaaactgTGTGA-TAAATT-AAATGATAG-ATTTATTATT-----------------TGTCAAGTTGATAACAAGTAA-TAAA-TATATTTCCAAAATATCACAGTCAGTAGA-AGTATAAAAATTTAAATAAATAAAGCCCTG-A-TAA-TTTAtagagtagcaaaaaggtaaattaagctggccattaatgatacaaagtatgctttta
gi|16 : GGGAACCAGTATGCCAAA
gi|17 : tcaagtttgaatgtatggaaagggaacaaaggtgatgcatgcatggtttctatctaggaatcccgagacgagcccccaaaaaagtaac-CTTGTGTAAGAGTGATAATC-TAACTGACCAA-GAGTCTTTATAT-TGCCAACACA-TCCAATGAAAAAGGCAAATAC-ATC--------------CTT-A-GAGACTATAA--TT-TCAACC-A--ATGAA
gi|18 : TAACTTGAAGAATCT-TCCATACA-CC-TCTAGA-GATATAAGGCTTCTAA---AA-TAGAAACAGGGAAAG-T-------------AT----AA--CATCCTAGG-GATATCTAGATCCACCCTGAACCA
gi|19 : TAT-AAAGAGAAAAG--AAAA-T-AA-GGGAGCGATAAA-C----T-GTATTTTTAACAAAAACAACCT-TCCATACA-CG-TC-A-A-GAAACA-----TCTAA---AATTAGAGA
gi|2 : GGGAACCAGTATGCCAAAGGCTC-TACTGATTCTAAAA-----ATT-ACCCCAA-GTTCCAATATG-TGATTTCCTAGACTAT-GGTCAACACCTTTATAAAAGTAAGAA--CTATGA-TAGATA-AA-TGATAG-ATTTATTATTAACAAAAAGA--AATA-TGTCGAGTTGATAACAA-TAA-CCAA-TCTAT--CCAAAATATCACAGT----AGA-AGTATAATAATTTAAA-AAAGAGAGGCCTG-A-TAC-TTTAAT-AAATGT-AAAGAAAAAAG--AAAA-A-TA-GGGAGATATAAA-C-T-AT-GTATTTTTAACTTAAAGAACCT-TCCATACAACC-TCTT-ATAATATA-GGCTTCTAA---AA-TAGAACCAGGGAAAG-TTGAGTA-TCAAAAAT----AA--C--CCTAGG-GATATCTAGATCCACCCTGA-CCAAAAGAACTC-AGAGAGTTATAAGAAAGAAAACGAACCTT--AGTTCTTGA-CTCGTGTAAGAGTGATAATT-TAACTGACCAG-GG--CTTTATATATGCCAACACA-TCCAATGAGGAAGACAGATAC-ATCTAAAAATAGAGAGGCTT-A-GAGACTATAA--TT-TTAACC-A--ATGAAA-TAAC-GGGGGAC-AAA-TTACGTTTGGAAA--GTATG-ACAA-TATGGCGGGGCGGA-T-AATGAAAATATCAG--ACCAGGAAAA-GG-TAAA-CAAAATGTAAAATCG-A-AATTCTGACTT----AAT-ACGAAGATTGATA-ACC-AGGAAA-TAAATTACA-TAGAA--ACTATA---TTA-TATA--GATTACTCTGAA---GACCAAGTTTTTAGTAG--A-AATCA--ACATG-TAAAAGTCAAAATT
gi|20 : GAACAT-TCCATACA-CC-T----------TG-GGCTTCTAA---AAATAGAAACAGGGATAGTT-GAGTATT-AAAAAT----AACTC--CCTAGG-GATA
gi|21 : ---GACGAAGTTTT-GGTAT--A-AATCA--TCATG-TAAAAATCAAAATT
gi|22 : AGGCTT-TACTGGTTCTGA------AATTTACCCCAA-GTTCAgttaca
gi|3 : GGAAACCAGTATGCCAAAGGCTCCTACTGGTTCTGAAATTT-AATTTACCCCAA-GTT--AATATGGTGATT-CCTA-ACTAT-GGTCAA-ACCTTTATAAAAG--AAAAG-CTGTGAATAAATT-AA-TAATAGCATTTATG--TAACCAGAA-A--AATAATGTCAAGTTCATAACAT-TAA-ACAAATATATTTC-AAAATATCACAGT----AGA-AGTATAATAATTCAAATAC-TAAAGCCCTG-AATAA-TTTAAT-AAATAT-AAAGCAGAAAG--AAAA-A-TC-AGGAGAAATAAA-C-TTAT-GTATTTTTAACTTAAAGGACCTGTCCATACA-CC-TCTATA-GATAAG-GGCTTCTAA---AAATAGAAACAGGGAA------------------T--------C--CCTAGGCGATATCTAGATCCA-CCTGAAACAAAAGAACTCAAGATAGTTCTAAGAAAGAAA-CGAACCTTTAGGTTCTTGACCTCGTGTAAGAGTGATAATT-T-ACTGACCAG-GGGT-TTTATATAGGCAAACACAGTCAGATGAGGAA-GCAAAT-C-ATCT-AACATAGAGAGTCTT-AGGAGACTATAA--TT-TC-ACC-A--ATGAAA-TAAC--GGGAAC--AA-TTACGTTTGGAAA--GTATG-ACAATTATGG-GGGGT--A-T-AATGAAAACATCAG--A--AGCAAAA-GG-TAAA-T-AAATTAAAAATCG-C-AAATCTG-CTT----ATA-ATGAACATTAATT-AACAGAG-AA-TAAATTACA-TG-AA--ACTATA---TGACTATA--AGTGACTCTGAA---GACAAAGTTTTTAGTCT--ACAATCA--TGAAG-TAAAAATCAAA
gi|4 : acgGGGAACCAGTATG-----------------TTCTTAAATTT-A-----CCCCAA-GTTCAA-TATGGTGATT-CCTAGACTAT-GGTCAACACCTTTGTAAAAGTAAGAAGACTGTTG-TAAATT-AA-TGATAG-ATTTATTATTAACAAGAATA--AATA-TGTCAAGTTGATAAAAATTAA-TAAA-TATATTTCCAAAATATCACATT----AGA-AGTATAATAATTGAAATAAATAAAGCTCTG-A-TAATTTTGAT-AAATGT-AAAGAGAAAAG--AAAA----A-GGAAGAAATAAA-C-T-AA-GTATTTTTAACTTAAAGAACC--TCCATA-A-CCATCTACA-GATATA-GGCTTCTAAACTAAACAG---CATG--AAG-T-GAGAA-T-AAAAATATACAA--C--C--ATG-GATATCTAGATTCATCCTGAACCAAAAGAA-TC-AGAGAGTTCTAAAAGAG-----GAACCTTTAGATTCTTGG-CTCGTGTAAGAGTGATAATTGTAACTGATCAACGGGCCTTTATATAT-CCATCA-----CAATGAGGAA-GCAAATACAATCTAAAAATAGAGAGGCTTCA-GAAACTATAAT-TT-TCAACCAA--ATGAAA-TATT-GGGGG---AAA-TTA-G-TTGGAAA--GT-TG-A-AA-CACGGC-GGGT--A-T-AATGAAACCATCAG--ACCAGCAAAA--G-T-AA-C--AATGTAAAATCG-A-AATTCTGATTT----ATT-ATG-ATATTAACATACCAAGAACA-TAAATTACA-T--AA--ACTAAA---CGA-TATA-GAGTGA-TTGGAA---GACCAA---TTTAGTAA--T-AATTA--TTAAG-TAAAAATCAAAATTttgttaccac
gi|5 : tgtaaaGGGAACAAGTATGCCAAAGGCTC-TACTGGTTCTGAAATTTAAATTTACCCCAA-GTTCAAA-ATGGTGATT-CCTAGACTAT-GGTCAACACCTTTATAAAAGTAAGAAGACTGTGA-TAAATTAAA-TAATAG-ATTTATT--------------------TGTCAAGTTGATACCAATTAACAAAA-TATATTTCCAAATTATCACAGT----AGA-AGT---ATAATTTAAAgtaca
gi|6 : tttgatttatgtatctcagcagacaattctaattctaaactctaaaactcttgtatttttcttacaatttcatccatctctcgctcattgtcactgtgagattgatctaactgtacagtaggtttgactgagtccttaaaggttactttcctttctgaattaactgcagatgtacatgcagtgcccccattatgactaatggactttcttttctcatactcattcttcactctcgtagcatgctgttagttcctgaaactctctctctaattctctttcactcttactgtctgtttctttctcaagggctacaaaattatagtttgtcgagtcagaaaactcttgaccctgtgatctattgacattagttttaggcctagcacccttatctttaggtgtggatgtatggaaggggaataaaggtgatgccatggtttctatctgggaatcccgaggcgagccccccaaaatgtaacGGGAACC-GTATGCCAA-GGCTC-TACTGGTTCTGAAATTT-CCCCCCCCCCAAAGGTCAAATATGGTGATT-CCTAGACTATGGGTCAACACCTTTAT-AAAGTAAGAAGACTGTGA-TAAATT-AA-TGATAG-ATTTAATATTAGCAAGAATA--GATA-TGTTAAGTTGATAACAA-TA----AA-TATATTTCCAAAATATCACA-T----AAA-AGTAGAATAATTTAAATAAATAAAGCCATG-A-CAA-TTTAAT-AAATGTAAAAGAGAAAAG--AAAATATTA-GGGAGAAATAAA-C-TAATAGTATGTTT
gi|7 : gtaacAGAGAGGCTT-A-AAC-CTATGC--TTGTCAACC-AGGATGAAAATAAC-GGC--AC-AAAATTACGTTTGGAGAAGGTATGGACAA-TATGGCGGG-T--A-TTGATGAAAAC--CAGCAACTAGCAAAAAGG-TAAAAC-AAATGT--AACCGAA-AATTTTGACTT----AATCATGAGTATTAATA-ACCAAAGAAAGTAAATTACA-TGAAAAGACTATAAGCTGA-TATAGGGGTGACTCTG-A---GACCAA-TTTTT-GTATAGA-AATCATTTCAAGCTAAAAATCAAAATT
gi|8 : -TAACTGACCAA-GGGTCTATATATATGTCAACACA-TTCAATCAGAATGGCAAAGAC-ATATAAAAATAGAGAGGCTT-C-GAGACTATAT--TT-CCGACC-A--ATGAAA-TTAC-GGGGAAC-AAA-TTACGTTTGGAAA--GTATG-ACAA-AATGGC-GGGT--A-T---TAGGATTAT--------AGCAAAA-GG-TAAA-C-AAATGTAAAATCG-A-AATTCTAACTTTTAGAAT-AGGAATATTAATA-ACCAAATAAA-TAAATCAGA-TGAAA--TCTATA---TGA-TATA-GGGTGACTCTGAA---GACGAAgttgacacatgtatgca
gi|9 : CTATATCCATC-TGAACCAAATGAACTC-AGAGAGTTCTAAGAAA--AA-CGAACCTTTAGGTTCTTGA-CTCGTATCAGAGTGATAATC-TAATTTACC---------------ATGCC------------TGA---AGGCAAAAAC-ATCTAAAAATAGAGAGGCTT-A-GAGTCTATAA--TT-TCAACC-A--ATGAAA-TAAC-GGGGAAC-AAA-TTACGTTCGGAAA--GTATG-ACAA-TATGGC-GGGT--A-T-AATGAA----------ACTAACAAAA-GG-TAAA-T-AA-------------------TGA---------------ATATTAATA-ACCAAAGAAA-TAAATTACA-TGAAA--ACTACA---