lowQualScore : 2222222222222222222222222222222222222222222222222222222222
lowQualScore : 3333 333 33 111 1 2 1 1 1 11 33333 1 11 11 11 1 1 1 1 1 1 2222 1 11 1 6666666666666666666666666666666666666666666666666666666666 11 11 1 444444444 11 1 66666666666666666666666666666666 111111 11 22222222222222 1111111 111 11111 1 33333 6666666666666666 1 44 11 1 11 1 11 333333333 1 1 33333333333333 11 111 1 222222 111 1 1 11 1 2 11 1 2 11 11 1 11 11 11 22222222222222 111 333 222 111 111 2222 111 1111 7777777777 11 555555
lowQualScore : 6 8888 6 333 555 4 4 66 6 333 3 7 3 5 6 1 3 3 99 33333 9 5 66 00 55 0 2 0 9 0 0 0 0 8888 2 22 0 6666666666666666666666666666666666666666666666666666666666 33 00 0 55 6 222222222 22 0 3 9 88888888888888888888888888888888 0 666666 0 33 99999999999999 1 5 6 9999999 999 33333 2 5 33333 3 6666666666666666 7 3 4 55 5 33 4 88 2 2 4 3 4 3 88 44 2 3 3 9 0 33 999999999 3 6 6 0 3 99999999999999 33 777 0 999999 3 3 333 2 0 33 0 0 0 1 11 6 2 0 9 11 8 0 2 2 3 33 44 6 4 6 77 3 7 44 1 77 8 0 11 8 0 3 77 9 11 33333333333333 1 222 555 888 8 000 000 5 0000 5 5 5 1 5 000 0 99 4444 6 2222222222 44 5 44 8 8 777777 6
lowQualScore : . .... . ... ... . . .. . ... . . . . . . . . .. ..... . . .. .. .. . . . . . . . . .... . .. . .......................................................... .. .. . .. . ......... .. . . . ................................ . ...... . .. .............. . . . ....... ... ..... . . ..... . ................ . . . .. . .. . .. . . . . . . .. .. . . . . . .. ......... . . . . . .............. .. ... . ...... . . ... . . .. . . . . .. . . . . .. . . . . . .. .. . . . .. . . .. . .. . . .. . . . .. . .. .............. . ... ... ... . ... ... . .... . . . . . ... . .. .... . .......... .. . .. . . ...... .
lowQualScore : 0 5555 0 555 000 0 0 00 0 888 3 3 3 0 0 0 3 3 00 77777 0 0 00 88 00 0 0 0 8 0 0 0 0 3333 0 00 0 5555555555555555555555555555555555555555555555555555555555 88 00 8 55 0 666666666 88 0 8 0 77777777777777777777777777777777 7 444444 1 66 22222222222222 7 7 7 0000000 222 22222 5 0 33333 7 3333333333333333 3 0 0 55 0 00 0 55 5 5 0 0 0 3 33 22 8 2 2 0 2 88 888888888 2 8 4 0 2 88888888888888 88 555 0 888888 2 0 000 5 0 55 8 0 8 4 00 0 8 0 6 00 0 0 5 8 0 88 00 7 0 7 77 3 0 00 4 22 0 8 00 0 8 0 44 0 00 22222222222222 4 666 000 000 8 000 000 7 1111 7 7 7 0 7 000 7 22 2222 7 6666666666 00 6 00 0 0 555555 0
consensus : NNGTCCGGGAAAAAAAAATCCCAAGCCTGGGTCTGTCGNATATTCCTGGGTAGGTNGANACTCCCTCAGTCTTNG-CCTTTTTCAGCTG-CTGTGCAATGTAAGCCTCCTGTACCTCCTGTCTATCCTCTTCTCT-CAAGAAATCTTGCTGAA-C---CCTGTCT-TTTCTGTAC-CATGTTATTCACTT-TCTTCTGAGCTCTGT-CCACGAATTC-TA-GCT-GTTTC-TGAGCCATGTT----CTCAGGTCAGGGTCTGAAGTCG-ATGTGAAGAGTGA-GA---GCGGGGGCTCTGCTTTTAT---AGC-CCGT----------AA-AANA----GG--TT--TTCCTANCGCGCGATCGCTCAGA--------TGTTCAGCATAGGTATT-----------TCC--AGG-TAT-TC------CAGCGCGTGCT------ATGTC--TAGA------CANC----TGTCTAGACGC-CAGGTG-TTC-A--T-CACGTGATCTGC--AGGTATTCCAGCGCACTGATTG-ACTGA-----TCGCNCTTG-G--TT-T--------TTTTGTGTGTCACTCATATTTNTTNAAAGTAGCCCTAAAAAGGGCTGTNNATGGTTTTT-TTNTTTAAAAATNCCCGGCTTCGTACGCGGGCTNTTCTATNTANANGTGTAAGT-CA--TGATCNGCGGACGTAATGTCCTCTA--CTA--------NTTGTCGAGCTCTTCTCCCCGGGAAACGTATCACTTCGACTG-TTTCCCACA----TCCA--NCCTGCA--TC---AAAA-AACAANCN---CCATACACTTCTTCGGTGACGT-GGTTTCTCCAGCCGAATAAATCCCGATACTTTTTGAGTGCC--GTTCAATAACGTGTAAAACTGGTAAA--TCATG-TACTGTA-TNAGGGAATTTTNAAGGTA--CATGTCTCGTAAACCCGNCCAAATATCCTCCGGTGTTTCATGTG-GACGCAATACATAGTCAAAACACCAATTTTTAGATCGGTCCCAGCGTAATCGGTGGCGACGT-CTCTGTACT--A-AATTTTCCCAGGTGTACATCTC--CTCTACATANGTGTTCATTTCTTCTTCCACGGTTCTGGTTGTTGACAAATCATACTCNAC---TT---G-T---AT-TCCG-T-GGCGGCGTCTCTCTCTTAAAATTCTC-CGTG---TATCCATGACTGGAGGT--CAG----ACAAG-AATGTG-GCTATATTNTAGAAACCACCTGACG-TGCAGGTGATT-GATCACGTGGTCTAATTGCACTCAATGACCTTTACCTATA
Reference ( gi|3 ) : ATGTCCGGGGAAAA-A--TCCTAAGCCTGGGTTTGTAGGAT---TCTGGGTAGGTAGATAC-ACTCCAGTCTTTG-CCTTTTTCAGCTG-CTGTGCAATGTAAGCCTGCTGTACATTCTGTCTATCTTCTTCACT-CAAGAAATCTTTCTGAAGC---CCCGTCTGTTTCTGTAC-TATACTATCTACTT-TCTTCTGAGCCCTGT-CCACGAATTC-TA-GCT-GTTTC-TGAGCCATGTT----CTCAGGTCAGGGTCTGAAGTCG-GTGTGAAGAGTGA-GA---G---------------------AGC-CCGT----------AA-AAGA----A---TT--TTCCTATCACGCGATCGC-CAGA--------TGTTCAGCATAGGTATT-----------TCT--AGG-TAT-TC------CAGCGCGTGCT------ATGTC--TAGA------CAGC----TGTCTAGACGC-CAGGTG-TTA-A--T-CACGTGATCTGG--AGGTATTCCAGTGCACTGATTGCACTGA-----TTGCCCTTG-G--TT-T--------TTTTGTGTGTCACTCATATTTTTTAAAAGTAGCCCTAAAAAGGGCTGTTCATGGTTTTTATTTTTTAAAAATCTCCGGCTTCGTACGCGGGTTCTTCTATATAAAAGTGTAAGT-CA--TGATCAGCCGACGTAATTTCCTCTA--CTA--------TTTGTCGAGCTCTTCTCCCTGGGAAACGTATCACATCGACTG-TTTCCCACA----GCCA--CTTTGCA--TC---AAAA-AACAATCC---CCATACACTTCTTAGGTGACGT-GGTTTCTCCAGCCGAAGAAATCCCGATACTTTTTGAGTGCC--GTTCAGTAACGTATACAACTGGTGAA--CCATG-TACTGTA-TGAGGGAATATTTAAGGTA--CATCTCTCGTAAACCCGTCCAAATATCCTCCTGTGTTTCATGTG-GACGCAATACATATTCAAAACACCAATTTTTAGATCTTTCCCAGTGTAATCTATGGCGACGT-CTCTGTACT--A-AATTTTCCCAGATGTATATATC--CTCTACATGGGTGTTCATTTCTTCTTCTACGGTTCTGGTGGGTGACAAAT---ACTCAAC---TT---G-T---AT-TCCG-T-GGCGACGTCTCTCTCTTAAAATTCTC-CGTG---TATCCATGACTGGAGGT--CAG----ACAAG-AATG--------ACTGTAGAAACAACCTGACG-TGCAGGTGATT-GATCATGTGG------TGCACTCAATGACCTCTACCTATA
gi|2 : GTCCGGGAAAAAAA--TCCTAAGCCTGGGTCTGTCATAT---TCTGGGTAGGTAGATAC-TCCTCAGTCTTCG-CCTTTTTCAGCTG-ATGTGCAATGTAAGCCTCCTGTACCTCTTGTCTGTCCTCTTCTTT-CAAGACATCTTTCTGAAGC---CCTGTCTGTTTCTGTAT-CATGTTATCCACTT-TCTTCTGAGCCCTGT-CCACGAATTA-TA-GCT-GTTTC-TGAGCCATGTT----CTCAGGTCAAGGTCTGAAGTCG-ATGTGAAAAGTGA-AA---GCGGGGACTCTGCTTTTAT---AGC-CCTT----------AA-AAGGGTTTA---TT--TTCCTATCACGCGATCGC-CAGA--------TGTTCAGCATAGGCATT-----------TCC--AGGCTATGTCTAGACACAGCGCGTGCT------ATG------------------------TCTAGACGC-CAGGTG-TTC-AGCC-CAGGT-ATTTAC--AGGTATTCCAGCGC
gi|1 : ggaaTCCGGGAAAAA-AAATCCCAAGCCTGGGTCTGTAGGATATTCCTGAGTAGGTTAAAACTCCTTCAGTCTTGGGCCTTTTTCATCTGGCTGTGTA-TGTAAGCCT-CTGTACCTCCTTTCTATCTTCTTCGCTTCAAGAAATCTTG-TGAA-CATTCCAGTCT-TTTCTGTACGCATGTTAT-TACTTGTCTTCTGAGCTCTGT-CCACGAA-TC-TATGCT-GTTTCTTGAGCCATGTTCATACTCAGGTCA-GGTCTGAAGTCGAATGTGAAGAGTGATGA---GTGGGTGGTCTCTGCTTTTAATAGC-CCGT----------AA-AACA----GGTTTT--TTCCT-----GC--TGGCTCAG---------TG-CCA--AT-GGT-TT-----------T----------T-TC------CAGCG-GTG---------TGTC--TAGA------CACC----TGTCTGAACGC-CTGGTG-TTC-A--TGCACGTGATCTGAACAGGT-----AGCGCACTGATTG-ACTGAGTAGGTTCCTCGTG-G--CC-T--------CTCTG-GTGCCgtgctgtgtctagacaggtgtctaaacgccaggtattcatcacgtgatctggaggtattctagtgcactgattgcacagattgcccttggggtttttttgtgtgtcactcatattttttaaaagtagccctaaaaagggctgttaatgtttttttttttaaatccccggcttcgtacgcgggttattctatataaaagtgtaagtcatgatcagcggacgtaatgtcctctatactatttgtcgagctcttcttccccggaaacgtatcacatcgactgtttcccatattgagcgacctgcatcaaaaaacaatccccatacatttcttaggtgacgtggtttctccagccgaataaatctcgatactttttgagtgctgttcaataacgtgtaaaactgcagaatcatgtactgtatgtaggaattttgaaggtatatctcgcttaaacccggccaaatatcctcctgtgtttcatgtggacgcaatacattttcaaaataccaatttttagatctttcccagcgtaatctgtggcgatgtctctatactaaattttctcagatgtagatcttctctacataggtgttcatttcttcttccacgattctggtggttgacaaatactcaacttgttgtattccgtggcggcgtctcgctcttaaaattctccgtgtatccatgactggaggtcagaccagaatgtgaattctagaaaccacctgaagtgcaggtgattgatcacgtggtgcactccatgacaggtgttttctgaacgttcatc
gi|5 : cggcctccatggggaggtcaactgagtgcacttttttatgcaaatgaggtcaatgtgattggtcaagccagtttgaccccagcaggggtcaagccgggctagcccggccgggtttagagtcggttttagatggccgggttagaggccggttataggtcggcctagttaagccgctggcctaaggtcaggttttagcattgtgaacgttcatgcggactttggacttggcagagcatatatgacgtttgcactgtttaaaaaatcgatacaatccaaggcataaaatctgacgtcaaaaatgtagcacacttaggaatgtgttatcgatcgcaaaaatcccagtgaatccagtaaatcctggtgtatattaaatcctgtgtattcctgtgcataatagactaaacaccaggtttaagtttacaatgtttattaaagaacaatgccaatgtaaaacatttttaaacagcaataaaaaaacagttcaagtgtttttatctttcgggctcagtttcttttcttctttaggcggttcttcagtgggtgcggggggattccacatctctaaacggtttgtaactctctcttcacgggggtttttgagcagtacgggcccaatcatctcagtgatcttctgcttttcttcaaggacagcactgatccagttgttccttatatccgcgcacttgtaacaaggatcccatttgtttggttttctttctggctggttaattctgccgtttttactggtctgcggataatctgatccgatttcttactggtctgccggaataatctgctttctggggcaaatccggcgaccaatgtcctgattttctctcgcaagtgtaaggacgggttgtcagcgtaattgtgagtgtagtcctttcctagggtttcctagatttttattccgtcacttcttccagcttcttccagcaggactgtgggtagatttccaaactcattactcacacattaattgctggtaacgatcccgtctgagtgtttgtggtaatgatcgcaaaatcttctttggttcatggccggaggctcgttctgtggttggtagaaggcccagttccagtccgttacagtctttgactctggaat-CCTTTTTCAGCTG-CTGTGCTATGTAAGCCTCTTGTACCTCCTGTTTATCCTCTTCTCT-CAAGAAATCTTGTTGAATT---CCTGTCTTTTTCTGTAC-CATGTTATTCACTT-TCTTCTGAGCTCTGT-CCACGAATTC-TA-GCT-GTTTC-TGAGCCATGTT----CTCAGGTCAGGGTGTGAAGTCG-ATGTGAAGTGTGA-GA---GTGTGGGCTCTGCTTTTAT---AGC-CCGT----------AA-AACA----GG--TT--TTTCCAGCGCCTGCTGGCTCAG---------TGC-CA--ATGGGTTTT-----------TC------------C------CAGTGCCTGCTGGCTCGATGCCAATGGGTTTTTCCAGCGCTCTGTCTAGACGC-CAGGTG-TTC-A--T-CACGTGATCTGC--AGGTA-----GTGCACTGATTAACCTTA-----ACGAACTTGTG--TTATGCCAGGGATTTTGTGTGTCACTCATATTTGTTTAAAGTAGCCCTAAAAAGGGCTGTGCATGGTTTTT--TATTTAAAAATATCCGGCTTCATACGCGGGCTCTTCTATTTACATGTATAAGT-CA--TGATCTTCGGACGTAATGTCCTGTA--CTA--------GATGTCGAGCTCTTCTCCCTGGGAAAGGTATCACTTTGACTG-TTTCCCACA----TCCA--GCCTGCA--TC---CCAA-AACAACAG---CCATACACTTCTCCGGTGACGT-GGTTTCTCCAGTCGAATAAATCCTGATACTTTTTGAGTGCC--GTTCAATAACGTGTAAAACTGGTAAA--TCATG-TACTGTA-TCAGGGACTTTTTAAGGTA--CATGTCTCGTAAACCCGTCCAAATATCCTCTGGTGTTTCATGTG-GACGCAATACATAGTCAAAACACAAATTTTTAGATCGGTCCCAGCGTAATCGATGGTGACAT-CTCTGTACT--A-AATTTGCCCAAGTGTACATCTC--CTCTACATAAA------------CTTCTACGA---TGGT---TGATAAAT---ATTTTAC---TTGCGG-T---AT-TCCG-T-G
gi|17 : aagactctctgggcctTGTAC-CATTCCGTTGACTT-TCTTTTGAACTCTGTCCCACAAAATCTTT-GCCGGTTTC-TG
gi|15 : GAAGTCG-GAATGAAGAATAA-GACTTG----------------------GCACCGTTTCTATAGCCAGCAAGA----A---TTCTTTCCTACCACGTGATCAG-CAGACATTCCAGTGATCAGCGCAGGTGTTATACCACGTGATCTGCAGG-TGT-TC------CAGCGCGTGAT------ATGtggcacaatagttcctctgctcacgtgtgtgatatagacgtgcgagtg
gi|2 : CGC-CAGG--------TGTTCAGCCCAGGTATT-----------TAC--AGG-TAT-TC------CAGCGCGTGCT------GTGTC--TAGA------CAGG----TGTCTAAACGC-CAGGTA-TTC-A--T-CACGTGATCTGG--AGGTATTCTAGTGCACTGATTGCACAGA-----TTGCCCTTG-GGGTT-T--------TTTTGTGTGTCACTCATATTTTTTAAAAGTAGCCCTAAAAAGGGCTGTTAATG-TTTTT-TTTTTTAAA--TCCCCGGCTTCGTACGCGGGTTATTCTATATAAAAGTGTAAGT-CA--TGATCAGCGGACGTAATGTCCTCTATACTA--------TTTGTCGAGCTCTTCTTCCCCGGAAACGTATCACATCGACTG-TTTCCCATATTGAGCGA--CCT-GCA--TC---AAAA-AACAATCC---CCATACATTTCTTAGGTGACGT-GGTTTCTCCAGCCGAATAAATCTCGATACTTTTTGAGTGCT--GTTCAATAACGTGTAAAACTGCAGAA--TCATG-TACTGTA-TGTAGGAATTTTGAAGGTA--TATCTCGCTTAAACCCGGCCAAATATCCTCCTGTGTTTCATGTG-GACGCAATACATTTTCAAAATACCAATTTTTAGATCTTTCCCAGCGTAATCTGTGGCGATGT-CTCTATACT--A-AATTTTCTCAGATGTAGATCTT--CTCTACATAGGTGTTCATTTCTTCTTCCACGATTCTGGTGGTTGACAAAT---ACTCAACTTGTT---G-T---AT-TCCG-T-GGCGGCGTCTCGCTCTTAAAATTCTC-CGTG---TATCCATGACTGGAGGT--CAG----ACCAG-AATGTGA-----ATTCTAGAAACCACCTGAAG-TGCAGGTGATT-GATCACGTGG------TGCACTCCATGAC
gi|2 : ggaagtccgggaaaaaaatcctaagcctgggtctgtcatattctgggtaggtagatactcctcagtcttcgcctttttcagctgatgtgcaatgtaagcctcctgtacctcttgtctgtcctcttctttcaagacatctttctgaagccctgtctgtttctgtatcatgttatccactttcttctgagccctgtccacgaattatagctgtttctgagccatgttctcaggtcaaggtctgaagtcgatgtgaaaagtgaaagcggggactctgcttttatagcccttaaaagggtttattttcctatcacgcgatcgccagatgttcagcataggcatttccaggctatgtctagacacagcgcgtgctatgtctaga-----------TCT--AGA-CAT----------AGCACGCGCT------GTGTC--TAGA------CAaggtgttttctgaacgttcatc
gi|10 : ggaagtccgggaaaaaaatcctaagcctgggtctgtcatattctgggtaggtagatactcctcagtcttcgcctttttcagctgatgtgcaatgtaagcctcctgtacctcttgtctgtcctcttctttcaagacatctttctgaagccctgtctgtttctgtatcatgttatccactttcttctgagccctgtccacgaattatagctgtttctgagccatgttctcaggtcaaggtctgaagtcgatgtgaaaagtgaaagcggggactctgcttttatagcccttaaaagggtttattttcctatcacgcgatcgccagatgttcagcataggcatttccaggctaGCT------ATATTA-TAGA-------AAC----CACCT-GACGTGCAGATGATTG-A--T-CACGTGGTCTcgccaggtgttcagcccaggtatttacaggtattccagcgcgtgctgtgtctagacaggtgtctaaacgccaggtattcatcacgtgatctggaggtattctagtgcactgattgcacagattgcccttggggtttttttgtgtgtcactcatattttttaaaagtagccctaaaaagggctgttaatgtttttttttttaaatccccggcttcgtacgcgggttattctatataaaagtgtaagtcatgatcagcggacgtaatgtcctctatactatttgtcgagctcttcttccccggaaacgtatcacatcgactgtttcccatattgagcgacctgcatcaaaaaacaatccccatacatttcttaggtgacgtggtttctccagccgaataaatctcgatactttttgagtgctgttcaataacgtgtaaaactgcagaatcatgtactgtatgtaggaattttgaaggtatatctcgcttaaacccggccaaatatcctcctgtgtttcatgtggacgcaatacattttcaaaataccaatttttagatctttcccagcgtaatctgtggcgatgtctctatactaaattttctcagatgtagatcttctctacataggtgttcatttcttcttccacgattctggtggttgacaaatactcaacttgttgtattccgtggcggcgtctcgctcttaaaattctccgtgtatccatgactggaggtcagaccagaatgtgaattctagaaaccacctgaagtgcaggtgattgatcacgtggtgcactccatgacaggtgttttctgaacgttcatc
gi|2 : ctctacacgtgtgttcatttcttcttcctcggttctggttgttgacaaatcatactccacttgttggattccgtggcggcgtctgttttaaaattctccgtgtatccatgactggatgtcaaacaagaatgtacGTT--TAGA------CACC----TGTCTAGACAC-aattgcactcaatgaccttta
gi|15 : ggaagtccgggaaaaaaatcctaagcctgggtctgtcatattctgggtaggtagatactcctcagtcttcgcctttttcagctgatgtgcaatgtaagcctcctgtacctcttgtctgtcctcttctttcaagacatctttctgaagccctgtctgtttctgtatcatgttatccactttcttctgagccctgtccacgaattatagctgtttctgagccatgttctcaggtcaaggtctgaagtcgatgtgaaaagtgaaagcggggactctgcttttatagcccttaaaagggtttattttcctatcacgcgatcgccagatgttcagcataggcatttccaggctatgtctagacacagcgcgtgctatgtctagacgccaggtgttcagcccaggtatttacaggtattccagcgcgtgct-CAGGTG-TTATA--C-CACGTGATCTGC--AGGTGTTCCAGCGCG-TGATgccaggtattcatcacgtgatctggaggtattctagtgcactgattgcacagattgcccttggggtttttttgtgtgtcactcatattttttaaaagtagccctaaaaagggctgttaatgtttttttttttaaatccccggcttcgtacgcgggttattctatataaaagtgtaagtcatgatcagcggacgtaatgtcctctatactatttgtcgagctcttcttccccggaaacgtatcacatcgactgtttcccatattgagcgacctgcatcaaaaaacaatccccatacatttcttaggtgacgtggtttctccagccgaataaatctcgatactttttgagtgctgttcaataacgtgtaaaactgcagaatcatgtactgtatgtaggaattttgaaggtatatctcgcttaaacccggccaaatatcctcctgtgtttcatgtggacgcaatacattttcaaaataccaatttttagatctttcccagcgtaatctgtggcgatgtctctatactaaattttctcagatgtagatcttctctacataggtgttcatttcttcttccacgattctggtggttgacaaatactcaacttgttgtattccgtggcggcgtctcgctcttaaaattctccgtgtatccatgactggaggtcagaccagaatgtgaattctagaaaccacctgaagtgcaggtgattgatcacgtggtgcactccatgacaggtgttttctgaacgttcatc
gi|13 : gaagtcggaatgaagaataagacttggcaccgtttctatagccagcaagaattctttcctaccacgtgatcagcagacattccagtgatcagcgTGTAAGTTCAGGTGATCAACTA--GTA-TTTCATTTT--CAA--------ATTATCGAA-TCTT-TCCC--------GTATCGC--C-ACTG-TT-CCCACA----TCCAATGTCTCCAGTCC---AAAC-AACAG-CA---CTATACCCCTC---GGTTACGGAGGTTTCTTCAATCG--GAA--------------TGAGTCCCGTGTTCAATAGCGTGTA-AAGTGGC-AA--CATTA-TACTGatg
gi|22 : ATCTGCGGACGTAATGTCCTCTA--CTACTATAGTATTTGTCGACTTCTTCTCCCTGGGAAACGTATCACTTTGAC
gi|7 : TCGAGCTCTTCTCCCCGGGAGACGTGTCACTTTGACGGATTTCCCACA----TCCA--CCT-GCA--TCCCCAAAACAACAAACCATACCAT---CTTCTTCG-TGACGT-GGTTTC--CAGC-GAATAAATCCTGATACTTTTTGAGTGCC--GTTCAATAACGT-TAAAACTGGTAAAATTCGTGATACTGTACTCAGGGAAT-TTTCAGGTAGCCATG-CTCGTAAACC-GCC--AATATCCTCTGGTGTTTCATGTGTGACGCAATACATAGTCAAAACACCAATTTTTAGATCGGCTCCAGCGTAATCGATGGCGACATACTCTGTATT--A-AA-TTTCCCAGGTGT---TACCATCTCTACATAAA------------CTTCTACG---CTGGT---TGATAATT---CCTCCAC---TT---GTT---GTATCCG-TGGGCGGTGTC-CGCTCTTAAAAGTCTC-CGTG---TATCCATGACTGGAGGT--CAT----ACAAG-AATG--------A-TG------CCAGCTAACGCTACAAGTGGTT-GATCACGTGA------TGCAC
gi|19 : CCGAATGAATCCCGATACTTTTTGAGTGCC--GTTCAATAACGTGTAAAACTGGTAAA--CCATG-TACTGTA-TGAGGGAATTTTGAATGTA--CATaggtgcttgatcacgtgatgcgattaccttttacctataaatacagggttttctgaaacgttcatg
gi|9 : cattgtttactcttTGTATTCTGTGGCGACGT-CTCTCTCTT--ATAATTCTCC---GTGTAT
gi|16 : cccaggtgtacatctcctctacatgtgtgttaatttcttctttctcggttctggttgttgacaaatcatactcgacttgtTGTATTCGCCGGCGACGT-CTCTG-ACTCAA-AATTCTCCccacgacttgaggtcagacaagaatgtgggctatattctagaaaccacctgctgtgcaagtgattgatcatgtggtctaattgcactcaatgacctttacctataaatacaggtgttctgaactttcatc
gi|9 : tgttctacatgttgacaaatcaaatcatgttcatcatttgactttCCCAGGTGTACATCTC--CTCTACATGTGTGTTAATTTCTTCTTTCTCGGTTCTGGTTGTTGACAAATCATACTCGAC---TT---G-TTGTAT-TCTG-T-GGCGACGTCTCTCTCTTATAATTCTC-CGTG---TATCCACGACTTGAGGT--CAG----ACAAG-AATGTGGGCTATATTCTAGAAACCACCTGCTG-TGCAAGTGATT-GATCATGTGGTCTAATTGCACTCAATGACCTTTACCTATAgtgctacatccatgactcgaggtaccagtaatacaag
gi|10 : --CTCTACACGTGTGTTCATTTCTTCTTCCTCGGTTCTGGTTGTTGACAAATCATACTCCAC---TT---G-TTGGAT-TCCG-T-GGCGGCGTCTGTTT--TAAAATTCTC-CGTG---TATCCATGACTGGATGT--CAA----ACAAG-AATGTACGCTATATTATAGAAACCACCTGACG-TGCAGATGATT-GATCACGTGGTCTAATTGCACTCAATGACCTTTAaatacaggtgttctgaactttcatc
gi|16 : ---TT---G-T---AT-TCGC-C-GGCGACGTCTCTGACTCAAAATTCTC-CGTGCTACATCCATGACTCGAGGTACCAGTAATACAAG-
gi|21 : tgttctacatgttgacaaatcaaatcatgttcatcatttgactt---TT---G-T----T-TTTGCT-GGCGATTTCTTTGTCTCGAGATTATC-CGTG---CATCCATGAATCGAGG
gi|20 : cttctgcctgttaacaaatcatatccatcctcggtcagCTTAAAAGTCTCGCGTG---TATCCATG-CTG-AGTT--AAG----CCAAGCAAT---------ACTGTAGAA-CG--CTGACG-TACAGGTGATTGGATCGTGTG
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): AAAAGACGATTACATAATCACAAGCCTATTATCAATAAATTGGATCGTCAAAAGGCGTACCGCGCAACGAACTTAGGAGTTAGTGGGATCGCACCTAAAATCAAATAGCAGTAAATATCCTGTGTAATCAATAAAAGAATAACACAAAATATAGTTTAACATGTTATTAAAGCAAAAAAAAGAACAATAAACTAAAATGAGTAATAAACAGTAAAAAAAACTAATAGATCAAGTTTCTGGATTACTAGTTCGGTTCTAGATAACTTCTTCTCTTTTTTAGCAGGTGGGATTCATTTCAGTAAGCATGTGCGGAGAGGATTCACAATACCTTTTCTCAAAAATTATTCTTTTATAACTCTCTCATTACAGCCAAAAGGTTTTGACCAAGGTACGGGCCCAATCATTTCACTCAGAATCTCCGTCTAGTTCTTAGCGGACATCACTGCACAATTACCCCGCTTGTCCTGCTAATTTCAATCCTAGGGGCAGCGGGGGTGCTAGCACACGAATCCCTTTGTATGGATTTTCTTCTGCATGGTCTACGAGGCACAGAGATTGCCTAGGAAAAACTAACATTTGCGCTCGTGCGAGATAATCTTCATACCCCGAAAAGTTCTTGCGCGATTAATGGCCTCGCAATTTAATGATCGGGGCAATCCGGCGACCAATGGACATCCTTTGTTGAATCCCCCCGCAAGTAGAATAAGGCTCCGTGGTTGCTAGACGTTCACCTGATTAATTTTTAAGAAGAGATGTTGTTATATTCCCTTCACTAGAGGGATTGATTGAAGCTAGAATGTAAAATCTTTTTTCTCTTCTCGCTCTTTCATCAGTCTTCTGATCAGAACAGTACACTGTGGTAATCGATTATACAATCTCATCTTGACTCATTACACCCTATTATGAGCGGAGATTAAACAATCCAACCGTGCTAGTGTCCTGTGTAATGTAAGTACAGCATAAAGTCTTCTATTTGTTTCATGGTACTGAAGGTT
Unaligned ( gi|6 ): TCAACTGACCGCGACTATTTTCATGCACACATGAGGCACCCATGTGTCAGCAGTTGACGCCCACAGTCTTGAAGTCGCCGCTAGCGCCGGCCAGCCCAGCCCCGCGATTTAGAGCCCCGGCGTTTATAGCCCGGTGAGCCCGGGCCGGTTTATAGCATGCTTGTTTTAAGCCCGTGAGCCCGCCGGGGTCGGTTTATAATGGTCCCGTCCGATTTACTGCCGTTACTTTTCGTCTTTGAGTTCGCGCCCGGAAAAGAGCTTATAATCTCTGAGAAGAAGATCAGACTTGAAGGAACATATACCAACTGACCTCCAAGAAAGATATCACACTTAGGCAATGTTTATCGATCGCAGAAAATCCAGTGAAATCCCAGTGTTACTCCCTCAACATGTGAAATTACGCTATCGATCGCATATATAACTCCTTTTGTATTTAAAATCCTGTGTCCCTCCTAACAGCATAATAAAAACTAACACCAGTTTAATTTACATGGATCTAATAAGCAAGCAACAACATCATAAACACGTTTTAAACAGCATAAAAATGCAGTTCAGGTTTACAATGTAAAACAGCCTTCAGCATAAAAAACAGTTCAAGTTTTTTTTACTTGCTCTAGCTCAGTAAGCATCCTATGTCTAAATAGGCGCCGACGTAGTCGAAATAATCCCATCCTACGCGATTTACTCTCTCTCACAGCAGTGTTGATCATGTGAGACAGTAACGGGCCCAAAATCATCTATCGGCATCTCCGGCTACGTTCTTGCGGACAAGTCACTGATCCAGTGTCCTTAAATTTCCCGCATGTGTGACAGATCCCTTTGTTTGGTTATTCTTCTGCTGGATGCCTTCTTACTGGTCTTCTAGTCATTACGGTCTGCGCGATAATCATGCTTTCTGGGGGCCATCCGGCGAGCAACAAATGTCCTGTTTC
Unaligned ( gi|8 ): AAGACAATGCCAGTAGTATAAGGCGCCTCCATAGCCGGTCCAACTGAGTGCACTTTTTATGCAAATGAGGTCAATGCTGATTGGTCAAGCAGTTTGACCCCAACAGGGGTCCTAGCCCTGGTTTAGAGTCCGGTTTATAGCACGGCCTGGGTTTATAGCCAGGCCGGGTCTAGAGCCCGGTTTATAGCATGACCGGGATTAGAGGGGTGTTTATAGGTCGACCTAGTTAAGCCGCTGGCCTAGAGTGCAGGTTTTAGCATTATGACGTCATGCGGTTTTGGAGAGCATTATGACGTCACAATGTAGCACACTTAGGAATGTGTTATCGATCGCATAAAATCCAGTGAAATCCGGTGTATTCCTGTGTATTAGATCCTGTGTATTCCTGTCCATAATAAAGACTAACACCAGGTTTAAGTT
Unaligned ( gi|11 ): ACGGCCTCATGGCTGGTTCAACTGAGGTGCACTTTTTAGGCAAATGAGGTCAATGCTGATTGGTCAGCAGTTTGACCCCAGCAGGGGTCGCCGGGCTAGCCCGGCCAGGCCCGGCCGGTCTAGAGCCCGGTGAGCCCGGCCGGGTTTAGAGCCGGTCGGGTTTATAGCCGCGTGAGCCCGGCCGGGTTTATAGCACGGC
Unaligned ( gi|12 ): ATAACGGGCCTCGATGGCTGGTACAACTGAGTGCACTTTTTATGCAAATGAGGTAAAGCAGGGAGGCTTCTGATTGGTCTTGAAAGCGGTGTCGGGCCTCCATGGCCGGTTCAATATCTAGGACGGAGTCAAGCAGTTTGACCTCAGCAGGAGTCGTCGGGCGCGGGATAGCCCGGTTTATAGCGCGGCCGGGTTTAG
Unaligned ( gi|14 ): ACGGCCTACATGGCTGGTTCAACTGAGTGAACTTTTTAGGCAAATGAGGTCAATGCTGATGGTAGCAGTTTGACCCCGCAGGGGTCGCCCGGCTAGCCCGGCAGCCGGCCGGTCTAGAGCCCGGTGAGCCGGCCGGGTTTAGAGCCCGGTCGGGTTTTATAGCCCGGTGAGCCCGGCCGGGTT
Unaligned ( gi|18 ): AAGGAGCATTTTCATTCATTTATGCAAATGAGTATCACAATACCGTGTGTCAACGCAGTTTGAGGACCCCGCAGGGGACGCCGGGCTAGCACGGCAACCCCAGCCGG
Unaligned ( gi|23 ): GGCTCTGCTTTTATAGCCCGTAAAACAGGT
Alignments
lowQualScore : 222 111 111 1 1 44444 2 1 1111 2222 11 22222 222222 33333333 1 333333333333333 11111 111111 111111 1111 11 11111 222 5555555555555555 11 1 1 11 11 22222222 111 111 11 111 111 11 1 1 111 333333333333333333333333 111 111 1111 555555555555 2222222 222222
lowQualScore : 7 999 0 999 7 6 1 1 99 777 0 9 8 3 0 99 11111 1 0 0 8 8 8 8 6 8 8 8 8 7777 5555 11 6 8 66666 6 6 7 666666 1 1 0 6 99999999 8 77 6 1 6 444444444444444 00000 6 999999 6 2 6 999999 99 1 3333 11 55555 111 0 1 6666666666666666 1 1 22 44 3 1 7 11 0 1 1 1 1 0 33 1 0 0 11 1 99999999 1 6 333 8 0 444 999 11 444 8 0 1 8 666 8 0 6 1 99 6 6 8 1 1 0 11 55 2 1 3 2 0 2 55 44 0 3 22 1 7 2 11 333 999999999999999999999999 9999 777 555 5 888 5 5 5 5 888 77 2222 222222222222 1 1111111 2 6 444444 0 0
lowQualScore : . ... . ... . . . . .. ... . . . . . .. ..... . . . . . . . . . . . . .... .... .. . . ..... . . . ...... . . . . ........ . .. . . . ............... ..... . ...... . . . ...... .. . .... .. ..... ... . . ................ . . .. .. . . . .. . . . . . . .. . . . .. . ........ . . ... . . ... ... .. ... . . . . ... . . . . .. . . . . . . .. .. . . . . . . .. .. . . .. . . . .. ... ........................ .... ... ... . ... . . . . ... .. .... ............ . ....... . . ...... . .
lowQualScore : 3 777 7 000 3 7 0 0 88 888 0 8 8 5 0 00 55555 2 0 0 0 2 0 0 0 0 0 0 0 0000 0000 22 7 0 33333 7 7 5 000000 0 4 6 7 77777777 0 77 7 7 0 333333333333333 88888 7 222222 7 5 7 222222 44 4 0000 00 00000 000 7 0 3333333333333333 0 0 00 00 3 0 3 77 7 0 0 0 0 0 88 0 8 8 00 0 00000000 0 3 555 0 8 000 888 00 000 0 8 0 8 888 0 8 7 0 22 7 7 0 0 0 8 00 88 5 0 2 5 0 5 00 55 0 2 22 0 3 5 88 999 000000000000000000000000 8888 555 666 0 888 0 0 0 0 888 99 1111 777777777777 0 7777777 5 7 000000 8 6
consensus : NNGTCCGGGAAAAAAA--TCCTAAGCCTGGGTCTGTAGGATATTCCTGGGTAGGTAGANACTCCCTCAGTCTT-CGCCTTTTTCAGCT-GCTGTGCAATGTAAGCCTCCTGTACCTCCTGTCTATCCTCTTCNC-TCAAGAAATCTTNCTGAAGC---CCCGTCTGTTT-CTGTAC-CATGTTATTCACTT-TCTTCTGAGCTCTGT-CCACGAATTC-TA-GCT-GTTTC-TGAGCCAT----GTTC---CTCAGGTCA-GGGTCTGAAGTCG-ATGTGAAGAGTGA-GAGTGGG-GG-CTCTGCTTTT-ATAGCCCGTAAAACAG---G--TTTTCCTACCGCGCGATC-GC-------TCAGATGTTCAGCATAGGTATT-----------TC--CAGG-TA--T-TC------CAGCGCG-TGCTA-TG------TCTAGACANCTGTCTAGACGCCAGGTGTTCA--T-CACGTGATCTG--CAGGTATTCCAGCGCACTGATTGCA-CTGATCGCCCTTG-G--TT-T--------TTTTGTGTGTCACTCATATTTTTTAAAAGTAGCCCTAAAAAGGGCTGTTCATGGTTTTT-TTTTTTAAAAATCTCCGGCTTCGTACGCGGGTTCTTCTATATAAAAGTGTAAGT-CA--TGATCAGCGGACGTAATGTCCTCTA--CTANT--------TGTCGAGCTCTTCTCCCCGGGAAACGTATCACNTCGACTG-TTTCCCACATC---CA--GCCTGCA--TC---AAAA-AACAANCNCCATAC-A-CTTCTTCGGTGACGT-GGTTTCTCCAGCC-GAATAAATCCCGATACTTTTTGAGTGCCGTTCAATAACGTGTAAAACTGGTAAA--TCA-TG-TACTGTA-TGAGGGAATTTTNAAGGTA--CATNTCTCGTAAACCCGNCCAAATATCCTCCGGTGTTTCATGTG-GACGCAATACATANTCAAAACACCAATTTTTAGATCNNTCCCAGCGTAATCNATGGCGACGT-CTCTGTACTAAATTTTCCCAGGTGTACATCTCCTCTACATGNGTGTTCATTTCTTCTTCCACGGTTCTGGTTGTTGACAAATCA------------TA------CTCG---AC---TT---G-T---AT-TCCG-T-GGCGGCGTCTCTCTCTTAAAATTCTC-CGTG---TATCCATGACTGGAGGT--CAG----ACAAGAATG-T-G---GCTATACTNTAGAA-------ACCACCTGACGTGCAGGTGATT-GATCACGTGGTCTAATTGCACTCAATGACCTTTACCTATA
Reference ( family-3778 ) : NNGTCCGGGAAAAAAAAATCCCAAGCCTGGGTCTGTCGNATATTCCTGGGTAGGTNGANACTCCCTCAGTCTT-NGCCTTTTTCAGCT-GCTGTGCAATGTAAGCCTCCTGTACCTCCTGTCTATCCTCTTCTC-TCAAGAAATCTTGCTGAA-C---CCTGTCT-TTT-CTGTAC-CATGTTATTCACTT-TCTTCTGAGCTCTGT-CCACGAATTC-TA-GCT-GTTTC-TGAGCCAT----GTT----CTCAGGTCA-GGGTCTGAAGTCG-ATGTGAAGAGTGA-GAGCGGG-GG-CTCTGCTTTT-ATAGCCCGTAAAANAG---G--TTTTCCTANCGCGCGATC-GC-------TCAGATGTTCAGCATAGGTATT-----------TC--CAGG-TA--T-TC------CAGCGCG-TGCTA-TG------TCTAGACANCTGTCTAGACGCCAGGTGTTCA--T-CACGTGATCTG--CAGGTATTCCAGCGCACTGATTG-A-CTGATCGCNCTTG-G--TT-T--------TTTTGTGTGTCACTCATATTTNTTNAAAGTAGCCCTAAAAAGGGCTGTNNATGGTTTTT-TTNTTTAAAAATNCCCGGCTTCGTACGCGGGCTNTTCTATNTANANGTGTAAGT-CA--TGATCNGCGGACGTAATGTCCTCTA--CTANT--------TGTCGAGCTCTTCTCCCCGGGAAACGTATCACTTCGACTG-TTTCCCACATC---CA--NCCTGCA--TC---AAAA-AACAANCNCCATAC-A-CTTCTTCGGTGACGT-GGTTTCTCCAGCC-GAATAAATCCCGATACTTTTTGAGTGCCGTTCAATAACGTGTAAAACTGGTAAA--TCA-TG-TACTGTA-TNAGGGAATTTTNAAGGTA--CATGTCTCGTAAACCCGNCCAAATATCCTCCGGTGTTTCATGTG-GACGCAATACATAGTCAAAACACCAATTTTTAGATCGGTCCCAGCGTAATCGGTGGCGACGT-CTCTGTACTAAATTTTCCCAGGTGTACATCTCCTCTACATANGTGTTCATTTCTTCTTCCACGGTTCTGGTTGTTGACAAATCA------------TA------CTCN---AC---TT---G-T---AT-TCCG-T-GGCGGCGTCTCTCTCTTAAAATTCTC-CGTG---TATCCATGACTGGAGGT--CAG----ACAAGAATG-T-G---GCTATATTNTAGAA-------ACCACCTGACGTGCAGGTGATT-GATCACGTGGTCTAATTGCACTCAATGACCTTTACCTATA
gi|1 : TCCGGGAAAA-AAAATCCCAAGCCTGGGTCTGTAGGATATTCCTGAGTAGGTTAAAACTCCTTCAGTCTTGGGCCTTTTTCATCTGGCTGTGT-ATGTAAGCCT-CTGTACCTCCTTTCTATCTTCTTCGCTTCAAGAAATCTTG-TGAA-CATTCCAGTCT-TTT-CTGTACGCATGTTATT-ACTTGTCTTCTGAGCTCTGT-CCACGAA-TC-TATGCT-GTTTCTTGAGCCAT----GTTCATACTCAGGTCA--GGTCTGAAGTCGAATGTGAAGAGTGATGAGTGGGTGGTCTCTGCTTTTAATAGCCCGTAAAACAG---GTTTTTTCCTGCTG--------GC-------TCAG-TG-CCA--AT-GGT-TT-----------T------------T-TC------CAGCG-G-TG----TG------TCTAGACACCTGTCTGAACGCCTGGTGTTCA--TGCACGTGATCTGAACAGGT-----AGCGCACTGATTG-A-CTGA
gi|10 : cggcctccatggggaggtcaactgagtgcacttttttatgcaaatgaggtcaatgtgattggtcaagccagtttgaccccagcaggggtcaagccgggctagcccggccgggtttagagtcggttttagatggccgggttagaggccggttataggtcggcctagttaagccgctggcctaaggtcaggttttagcattgtgaacgttcatgcggactttggacttggcagagcatatatgacgtttgcactgtttaaaaaatcgatacaatccaaggcataaaatctgacgtcaaaaatgtagcacacttaggaatgtgttatcgatcgcaaaaatcccagtgaatccagtaaatcctggtgtatattaaatcctgtgtattcctgtgcataatagactaaacaccaggtttaagtttacaatgtttattaaagaacaatgccaatgtaaaacatttttaaacagcaataaaaaaacagttcaagtgtttttatctttcgggctcagtttcttttcttctttaggcggttcttcagtgggtgcggggggattccacatctctaaacggtttgtaactctctcttcacgggggtttttgagcagtacgggcccaatcatctcagtgatcttctgcttttcttcaaggacagcactgatccagttgttccttatatccgcgcacttgtaacaaggatcccatttgtttggttttctttctggctggttaattctgccgtttttactggtctgcggataatctgatccgatttcttactggtctgccggaataatctgctttctggggcaaatccggcgaccaatgtcctgattttctctcgcaagtgtaaggacgggttgtcagcgtaattgtgagtgtagtcctttcctagggtttcctagatttttattccgtcacttcttccagcttcttccagcaggactgtgggtagatttccaaactcattactcacacattaattgctggtaacgatcccgtctgagtgtttgtggtaatgatcgcaaaatcttctttggttcatggccggaggctcgttctgtggttggtagaaggcccagttccagtccgttacagtctttgactctggaatCTCTACACGTGTGTTCATTTCTTCTTCCTCGGTTCTGGTTGTTGACAAATCA------------TA------CTCC---AC---TT---G-TTGGAT-TCCG-T-GGCGGCGTCTGTTT--TAAAATTCTC-CGTG---TATCCATGACTGGATGT--CAA----ACAAGAATG-T-AC--GCTATATTATAGAA-------ACCACCTGACGTGCAGATGATT-GATCACGTGGTCTAATTGCACTCAATGACCTTTAgtaggttcctcgtggcctctctggtgcc
gi|13 : TGTAAGTTCAGGTGATCAACTA--GTA-TTTCATTTT--CAAAT--------TATCGAA-TCTT-TCCC--------GTATCGCC---ACTG-TT-CCCACATC---CAATGTCTCCAGTCC---AAAC-AAC-AGCACTATAC-----CCCTCGGTTACGGAGGTTTCTTCAATCGGAATGAGTCCCG---------------TGTTCAATAGCGTGTAAAG-TGGCAA----CATTA-TACTG
gi|15 : GAAGTCG-GAATGAAGAATAA-GACT--T-GG-CACCGTTTCT-ATAGCCAGCAAGA-AT---T--CTTTCCTACCACGTGATCAGCAGACATTCCAG-TGATCAGCGCAGGTGTTATACCACGTGATCTGCAGG-TG--T-TC------CAGCGCG-TGATA-TG------
gi|16 : GTTCTACATGTTGACAAATCAAATCATGTTCATCA------TTTG---AC---TTTT-G-T---AT-TCGC-C-GGCGACGTCTCTGACTCAAAATTCTC-CGTGCTACATCCATGACTCGAGGTACCAGTAATACAAG
gi|17 : tTGTAC-CATTCCGTTGACTT-TCTTTTGAACTCTGTCCCACAAAATCTTT-GCCGGTTTC-TGTGGCACAATAGTTC---CTCTGCTCACGTGTGTGATATAG-ACGTG-CGAGTG
gi|19 : CC-GAATGAATCCCGATACTTTTTGAGTGCCGTTCAATAACGTGTAAAACTGGTAAA--CCA-TG-TACTGTA-TGAGGGAATTTTGAATGTA--CAT
gi|2 : cattgtttactcttGTCCGGGAAAAAAA--TCCTAAGCCTGGGTCTGTC--ATATTC-TGGGTAGGTAGATACTCC-TCAGTCTT-CGCCTTTTTCAGCT-GATGTGCAATGTAAGCCTCCTGTACCTCTTGTCTGTCCTCTTCTT-TCAAGACATCTTTCTGAAGC---CCTGTCTGTTT-CTGTAT-CATGTTATCCACTT-TCTTCTGAGCCCTGT-CCACGAATTA-TA-GCT-GTTTC-TGAGCCAT----GTT----CTCAGGTCA-AGGTCTGAAGTCG-ATGTGAAAAGTGA-AAGCGGG-GA-CTCTGCTTTT-ATAGCCCTTAAAAGGGTTTA--TTTTCCTATCACGCGATC-GC--------CAGATGTTCAGCATAGGCATT-----------TC--CAGGCTA--TGTCTAGACACAGCGCG-TGCTA-TG------TCTAGAC------------GCCAGGTGTTCAGCC-CAGGT-ATTTA--CAGGTATTCCAGCGC
gi|2 : ggaaC-GC--------CAGGTGTTCAGCCCAGGTATT-----------TA--CAGG-TA--T-TC------CAGCGCG-TGCTG-TG------TCTAGACAGGTGTCTAAACGCCAGGTATTCA--T-CACGTGATCTG--GAGGTATTCTAGTGCACTGATTGCA-CAGATTGCCCTTG-GGGTT-T--------TTTTGTGTGTCACTCATATTTTTTAAAAGTAGCCCTAAAAAGGGCTGTTAATG-TTTTT-TTTTTTAAA--TCCCCGGCTTCGTACGCGGGTTATTCTATATAAAAGTGTAAGT-CA--TGATCAGCGGACGTAATGTCCTCTATACTATT--------TGTCGAGCTCTTCTTCCCCGGAAACGTATCACATCGACTG-TTTCCCATATTGAGCG--ACCTGCA--TC---AAAA-AACAATCCCCATAC-A-TTTCTTAGGTGACGT-GGTTTCTCCAGCC-GAATAAATCTCGATACTTTTTGAGTGCTGTTCAATAACGTGTAAAACTGCAGAA--TCA-TG-TACTGTA-TGTAGGAATTTTGAAGGTA--TATCTCGCTTAAACCCGGCCAAATATCCTCCTGTGTTTCATGTG-GACGCAATACATTTTCAAAATACCAATTTTTAGATCTTTCCCAGCGTAATCTGTGGCGATGT-CTCTATACTAAATTTTCTCAGATGTAGATCTTCTCTACATAGGTGTTCATTTCTTCTTCCACGATTCTGGTGGTTGACAA---A------------TA------CTCA---ACTTGTT---G-T---AT-TCCG-T-GGCGGCGTCTCGCTCTTAAAATTCTC-CGTG---TATCCATGACTGGAGGT--CAG----ACCAGAATG-T-G---A----ATTCTAGAA-------ACCACCTGAAGTGCAGGTGATT-GATCACGTGG------TGCACTCCATGACgtgctgtgtctagacaggtgtctaaacgccaggtattcatcacgtgatctggaggtattctagtgcactgattgcacagattgcccttggggtttttttgtgtgtcactcatattttttaaaagtagccctaaaaagggctgttaatgtttttttttttaaatccccggcttcgtacgcgggttattctatataaaagtgtaagtcatgatcagcggacgtaatgtcctctatactatttgtcgagctcttcttccccggaaacgtatcacatcgactgtttcccatattgagcgacctgcatcaaaaaacaatccccatacatttcttaggtgacgtggtttctccagccgaataaatctcgatactttttgagtgctgttcaataacgtgtaaaactgcagaatcatgtactgtatgtaggaattttgaaggtatatctcgcttaaacccggccaaatatcctcctgtgtttcatgtggacgcaatacattttcaaaataccaatttttagatctttcccagcgtaatctgtggcgatgtctctatactaaattttctcagatgtagatcttctctacataggtgttcatttcttcttccacgattctggtggttgacaaatactcaacttgttgtattccgtggcggcgtctcgctcttaaaattctccgtgtatccatgactggaggtcagaccagaatgtgaattctagaaaccacctgaagtgcaggtgattgatcacgtggtgcactccatgacaggtgttttctgaacgttcatc
gi|20 : ggaagtccgggaaaaaaatcctaagcctgggtctgtcatattctgggtaggtagatactcctcagtcttcgcctttttcagctgatgtgcaatgtaagcctcctgtacctcttgtctgtcctcttctttcaagacatctttctgaagccctgtctgtttctgtatcatgttatccactttcttctgagccctgtccacgaattatagctgtttctgagccatgttctcaggtcaaggtctgaagtcgatgtgaaaagtgaaagcggggactctgcttttatagcccttaaaagggtttattttcctatcacgcgatcgccagatgttcagcataggcatttccaggctatgtctagacacagcgcgtgctatgtctagaCTTAAAAGTCTCGCGTG---TATCCATG-CTG-AGTT--AAG----CCAAGCA------------ATACTGTAGAA---------CGC-TGACGTACAGGTGATTGGATCGTGTGaggtgttttctgaacgttcatc
gi|21 : tcactaTTCTGCCTGTTAACAAATCA------------TATCCATCCTCGGTCAG---TT---G-T----T-TTTGCT-GGCGATTTCTTTGTCTCGAGATTATC-CGTG---CATCCATGAATCGAGGccaggtggtgtttt
gi|22 : cATCTGCGGACGTAATGTCCTCTA--CTACTATAGTATTTGTCGACTTCTTCTCCCTGGGAAACGTATCACTTTGAC
gi|23 : -GG-CTCTGCTTTT-ATAGCCCGTAAAACAG---G--T
gi|3 : GTCCGGGGAAAAA---TCCTAAGCCTGGGTTTGTAGGAT---TCTGGGTAGGTAGATACACTC-CAGTCTT-TGCCTTTTTCAGCT-GCTGTGCAATGTAAGCCTGCTGTACATTCTGTCTATCTTCTTCAC-TCAAGAAATCTTTCTGAAGC---CCCGTCTGTTT-CTGTAC-TATACTATCTACTT-TCTTCTGAGCCCTGT-CCACGAATTC-TA-GCT-GTTTC-TGAGCCAT----GTT----CTCAGGTCA-GGGTCTGAAGTCG-GTGTGAAGAGTGA-GAG---------------------AGCCCGTAAAAGAA------TTTTCCTATCACGCGATC-GC--------CAGATGTTCAGCATAGGTATT-----------TC--TAGG-TA--T-TC------CAGCGCG-TGCTA-TG------TCTAGACAGCTGTCTAGACGCCAGGTGTTAA--T-CACGTGATCTG--GAGGTATTCCAGTGCACTGATTGCA-CTGATTGCCCTTG-G--TT-T--------TTTTGTGTGTCACTCATATTTTTTAAAAGTAGCCCTAAAAAGGGCTGTTCATGGTTTTTATTTTTTAAAAATCTCCGGCTTCGTACGCGGGTTCTTCTATATAAAAGTGTAAGT-CA--TGATCAGCCGACGTAATTTCCTCTA--CTATT--------TGTCGAGCTCTTCTCCCTGGGAAACGTATCACATCGACTG-TTTCCCACAGC---CA--CTTTGCA--TC---AAAA-AACAATCCCCATAC-A-CTTCTTAGGTGACGT-GGTTTCTCCAGCC-GAAGAAATCCCGATACTTTTTGAGTGCCGTTCAGTAACGTATACAACTGGTGAA--CCA-TG-TACTGTA-TGAGGGAATATTTAAGGTA--CATCTCTCGTAAACCCGTCCAAATATCCTCCTGTGTTTCATGTG-GACGCAATACATATTCAAAACACCAATTTTTAGATCTTTCCCAGTGTAATCTATGGCGACGT-CTCTGTACTAAATTTTCCCAGATGTATATATCCTCTACATGGGTGTTCATTTCTTCTTCTACGGTTCTGGTGGGTGACAA---A------------TA------CTCA---AC---TT---G-T---AT-TCCG-T-GGCGACGTCTCTCTCTTAAAATTCTC-CGTG---TATCCATGACTGGAGGT--CAG----ACAAGAATG------------ACTGTAGAA-------ACAACCTGACGTGCAGGTGATT-GATCATGTGG------TGCACTCAATGACCTCTACCTATA
gi|5 : atAGACTCTCTGGGCCT----CCTTTTTCAGCT-GCTGTGCTATGTAAGCCTCTTGTACCTCCTGTTTATCCTCTTCTC-TCAAGAAATCTTGTTGAA-TT--CCTGTCT-TTTTCTGTAC-CATGTTATTCACTT-TCTTCTGAGCTCTGT-CCACGAATTC-TA-GCT-GTTTC-TGAGCCAT----GTT----CTCAGGTCA-GGGTGTGAAGTCG-ATGTGAAGTGTGA-GAGTGTG-GG-CTCTGCTTTT-ATAGCCCGTAAAACAG---G--TTTTTCCAGCGCCTGCTG-GC-------TCAG-TGC-CA--ATGGGTTTT-----------TC--CCAG-TGCCT-GC------TGGCTCGATGCCAATGGGTTTTTCCAGCGCTCTGTCTAGACGCCAGGTGTTCA--T-CACGTGATCTG--CAGGT-----AGTGCACTGATTA-ACCTTAACGAACTTGTG--TTATGCCAGGGATTTTGTGTGTCACTCATATTTGTTTAAAGTAGCCCTAAAAAGGGCTGTGCATGG-TTTT-TTATTTAAAAATATCCGGCTTCATACGCGGGCTCTTCTATTTACATGTATAAGT-CA--TGATCTTCGGACGTAATGTCCTGTA--CTAGA--------TGTCGAGCTCTTCTCCCTGGGAAAGGTATCACTTTGACTG-TTTCCCACATC---CA--GCCTGCA--TC---CCAA-AACAACAGCCATAC-A-CTTCTCCGGTGACGT-GGTTTCTCCAGTC-GAATAAATCCTGATACTTTTTGAGTGCCGTTCAATAACGTGTAAAACTGGTAAA--TCA-TG-TACTGTA-TCAGGGACTTTTTAAGGTA--CATGTCTCGTAAACCCGTCCAAATATCCTCTGGTGTTTCATGTG-GACGCAATACATAGTCAAAACACAAATTTTTAGATCGGTCCCAGCGTAATCGATGGTGACAT-CTCTGTACTAAATTTGCCCAAGTGTACATCTCCTCTACATAAA------------CTTCTACGA---TG---GTTGATAA---A------------TA------TTTT---AC---TTGCGG-T---AT-TCCG-T-G
gi|7 : aTCGAGCTCTTCTCCCCGGGAGACGTGTCACTTTGACGGATTTCCCACATC---CA---CCTGCA--TCCCCAAAACAACAAAC--CATACCATCTTCTTCG-TGACGT-GGTTTC--CAGC--GAATAAATCCTGATACTTTTTGAGTGCCGTTCAATAACGT-TAAAACTGGTAAAATTCG-TGATACTGTACTCAGGGAATTTTCA-GGTAGCCATG-CTCGTAAACC--GCCAA-TATCCTCTGGTGTTTCATGTGTGACGCAATACATAGTCAAAACACCAATTTTTAGATCGGCTCCAGCGTAATCGATGGCGACATACTCTGTATTAAA-TTTCCCAGGTGT-TACCATCTCTACATAAA------------CTTCTACG---CTG---GTTGATAATTC---------------------CTCC---AC---TT---GTT---GTATCCG-TGGGCGGTGTC-CGCTCTTAAAAGTCTC-CGTG---TATCCATGACTGGAGGT--CAT----ACAAGAATGAT-GCCAGCTA-ACGCTACAAGTGGTTGATCACGTGATGCACAGGTGCTT-GATCACGTGATGCGATTAC---------CTTTTACCTATA
gi|9 : CCCAGGTGTACATCTCCTCTACATGTGTGTTAATTTCTTCTTTCTCGGTTCTGGTTGTTGACAAATCA------------TA------CTCG---ACTTGTT---G-T---AT-TCTG-T-GGCGACGTCTCTCTCTTATAATTCTC-CGTG---TATCCACGACTTGAGGT--CAG----ACAAGAATG-TGG---GCTATATTCTAGAA-------ACCACCTGCTGTGCAAGTGATT-GATCATGTGGTCTAATTGCACTCAATGACCTTTACCTATAaatacagggttttctgaaacgttcatg
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): AAAAGACGATTACATAATCACAAGCCTATTATCAATAAATTGGATCGTCAAAAGGCGTACCGCGCAACGAACTTAGGAGTTAGTGGGATCGCACCTAAAATCAAATAGCAGTAAATATCCTGTGTAATCAATAAAAGAATAACACAAAATATAGTTTAACATGTTATTAAAGCAAAAAAAAGAACAATAAACTAAAATGAGTAATAAACAGTAAAAAAAACTAATAGATCAAGTTTCTGGATTACTAGTTCGGTTCTAGATAACTTCTTCTCTTTTTTAGCAGGTGGGATTCATTTCAGTAAGCATGTGCGGAGAGGATTCACAATACCTTTTCTCAAAAATTATTCTTTTATAACTCTCTCATTACAGCCAAAAGGTTTTGACCAAGGTACGGGCCCAATCATTTCACTCAGAATCTCCGTCTAGTTCTTAGCGGACATCACTGCACAATTACCCCGCTTGTCCTGCTAATTTCAATCCTAGGGGCAGCGGGGGTGCTAGCACACGAATCCCTTTGTATGGATTTTCTTCTGCATGGTCTACGAGGCACAGAGATTGCCTAGGAAAAACTAACATTTGCGCTCGTGCGAGATAATCTTCATACCCCGAAAAGTTCTTGCGCGATTAATGGCCTCGCAATTTAATGATCGGGGCAATCCGGCGACCAATGGACATCCTTTGTTGAATCCCCCCGCAAGTAGAATAAGGCTCCGTGGTTGCTAGACGTTCACCTGATTAATTTTTAAGAAGAGATGTTGTTATATTCCCTTCACTAGAGGGATTGATTGAAGCTAGAATGTAAAATCTTTTTTCTCTTCTCGCTCTTTCATCAGTCTTCTGATCAGAACAGTACACTGTGGTAATCGATTATACAATCTCATCTTGACTCATTACACCCTATTATGAGCGGAGATTAAACAATCCAACCGTGCTAGTGTCCTGTGTAATGTAAGTACAGCATAAAGTCTTCTATTTGTTTCATGGTACTGAAGGTT
Unaligned ( gi|6 ): TCAACTGACCGCGACTATTTTCATGCACACATGAGGCACCCATGTGTCAGCAGTTGACGCCCACAGTCTTGAAGTCGCCGCTAGCGCCGGCCAGCCCAGCCCCGCGATTTAGAGCCCCGGCGTTTATAGCCCGGTGAGCCCGGGCCGGTTTATAGCATGCTTGTTTTAAGCCCGTGAGCCCGCCGGGGTCGGTTTATAATGGTCCCGTCCGATTTACTGCCGTTACTTTTCGTCTTTGAGTTCGCGCCCGGAAAAGAGCTTATAATCTCTGAGAAGAAGATCAGACTTGAAGGAACATATACCAACTGACCTCCAAGAAAGATATCACACTTAGGCAATGTTTATCGATCGCAGAAAATCCAGTGAAATCCCAGTGTTACTCCCTCAACATGTGAAATTACGCTATCGATCGCATATATAACTCCTTTTGTATTTAAAATCCTGTGTCCCTCCTAACAGCATAATAAAAACTAACACCAGTTTAATTTACATGGATCTAATAAGCAAGCAACAACATCATAAACACGTTTTAAACAGCATAAAAATGCAGTTCAGGTTTACAATGTAAAACAGCCTTCAGCATAAAAAACAGTTCAAGTTTTTTTTACTTGCTCTAGCTCAGTAAGCATCCTATGTCTAAATAGGCGCCGACGTAGTCGAAATAATCCCATCCTACGCGATTTACTCTCTCTCACAGCAGTGTTGATCATGTGAGACAGTAACGGGCCCAAAATCATCTATCGGCATCTCCGGCTACGTTCTTGCGGACAAGTCACTGATCCAGTGTCCTTAAATTTCCCGCATGTGTGACAGATCCCTTTGTTTGGTTATTCTTCTGCTGGATGCCTTCTTACTGGTCTTCTAGTCATTACGGTCTGCGCGATAATCATGCTTTCTGGGGGCCATCCGGCGAGCAACAAATGTCCTGTTTC
Unaligned ( gi|8 ): AAGACAATGCCAGTAGTATAAGGCGCCTCCATAGCCGGTCCAACTGAGTGCACTTTTTATGCAAATGAGGTCAATGCTGATTGGTCAAGCAGTTTGACCCCAACAGGGGTCCTAGCCCTGGTTTAGAGTCCGGTTTATAGCACGGCCTGGGTTTATAGCCAGGCCGGGTCTAGAGCCCGGTTTATAGCATGACCGGGATTAGAGGGGTGTTTATAGGTCGACCTAGTTAAGCCGCTGGCCTAGAGTGCAGGTTTTAGCATTATGACGTCATGCGGTTTTGGAGAGCATTATGACGTCACAATGTAGCACACTTAGGAATGTGTTATCGATCGCATAAAATCCAGTGAAATCCGGTGTATTCCTGTGTATTAGATCCTGTGTATTCCTGTCCATAATAAAGACTAACACCAGGTTTAAGTT
Unaligned ( gi|11 ): ACGGCCTCATGGCTGGTTCAACTGAGGTGCACTTTTTAGGCAAATGAGGTCAATGCTGATTGGTCAGCAGTTTGACCCCAGCAGGGGTCGCCGGGCTAGCCCGGCCAGGCCCGGCCGGTCTAGAGCCCGGTGAGCCCGGCCGGGTTTAGAGCCGGTCGGGTTTATAGCCGCGTGAGCCCGGCCGGGTTTATAGCACGGC
Unaligned ( gi|12 ): ATAACGGGCCTCGATGGCTGGTACAACTGAGTGCACTTTTTATGCAAATGAGGTAAAGCAGGGAGGCTTCTGATTGGTCTTGAAAGCGGTGTCGGGCCTCCATGGCCGGTTCAATATCTAGGACGGAGTCAAGCAGTTTGACCTCAGCAGGAGTCGTCGGGCGCGGGATAGCCCGGTTTATAGCGCGGCCGGGTTTAG
Unaligned ( gi|14 ): ACGGCCTACATGGCTGGTTCAACTGAGTGAACTTTTTAGGCAAATGAGGTCAATGCTGATGGTAGCAGTTTGACCCCGCAGGGGTCGCCCGGCTAGCCCGGCAGCCGGCCGGTCTAGAGCCCGGTGAGCCGGCCGGGTTTAGAGCCCGGTCGGGTTTTATAGCCCGGTGAGCCCGGCCGGGTT
Unaligned ( gi|18 ): AAGGAGCATTTTCATTCATTTATGCAAATGAGTATCACAATACCGTGTGTCAACGCAGTTTGAGGACCCCGCAGGGGACGCCGGGCTAGCACGGCAACCCCAGCCGG
Alignments
lowQualScore : 22 111 1 1 22222 1111 3333 11 22222 111111 1111 33333333 1 333333333333333 11111 111111 111111 1111 11 11111 5555555555555555 1 1 11 11 22222222 2222222 11 111 111 11 1 1 111 333333333333333333333333 1111 111 111 1111 555555555555 2222222 222222
lowQualScore : 00 6 7 6 1 99 999 0 9 8 1 0 77 00000 4 8 8 8 8 8 6 8 8 8 8 7777 4444 11 6 8 00000 6 6 222222 7777 1 1 0 6 99999999 8 77 6 1 6 444444444444444 00000 6 999999 6 2 6 999999 99 1 3333 11 00000 8 0 6666666666666666 6 3 7 7 0 33 1 0 0 11 1 99999999 1 6 222 8 0 6666666 11 444 8 0 1 8 666 8 0 6 1 99 6 6 8 1 0 11 44 2 1 3 2 0 1 22 1 0 3 22 1 7 2 11 333 999999999999999999999999 2222 777 555 5 888 5 5 5 5 888 77 2222 222222222222 1 1111111 2 6 444444 0 0
lowQualScore : .. . . . . .. ... . . . . . .. ..... . . . . . . . . . . . .... .... .. . . ..... . . ...... .... . . . . ........ . .. . . . ............... ..... . ...... . . . ...... .. . .... .. ..... . . ................ . . . . . .. . . . .. . ........ . . ... . . ....... .. ... . . . . ... . . . . .. . . . . . .. .. . . . . . . .. . . . .. . . . .. ... ........................ .... ... ... . ... . . . . ... .. .... ............ . ....... . . ...... . .
lowQualScore : 77 7 3 7 0 88 888 0 8 8 0 0 55 22222 2 8 0 2 0 0 0 0 0 0 0 0000 0000 22 7 0 55555 7 7 888888 0000 4 4 6 7 77777777 0 77 7 7 0 333333333333333 88888 7 222222 7 5 7 222222 44 4 0000 00 22222 8 7 3333333333333333 7 3 3 3 0 88 4 8 8 00 0 00000000 0 3 333 0 8 4444444 00 000 0 8 0 8 888 0 8 7 0 22 7 7 0 0 8 00 22 5 0 2 5 0 0 00 0 0 2 22 0 3 5 88 999 000000000000000000000000 1111 555 666 0 888 0 0 0 0 888 99 1111 777777777777 0 7777777 5 7 000000 8 6
consensus : NNGTCCGGGAAAAAAA-TCCTAAGCCTGGGTCTGTAGGATATTCCTGGGTAGGTAGANACTCCCTCAGTCTT-CGCCTTTTTCAGCT-GCTGTGCAATGTAAGCCTCCTGTACCTCCTGTCTATCCTCTTCNC-TCAAGAAATCTTNCTGAAGC---CCCGTCTGTTTCTGTAC-CATGTTATTCACTT-TCTTCTGAGCTCTGT-CCACGAATTC-TA-GCT-GTTTC-TGAGCCAT----GTTC---CTCAGGTCA-GGGTCTGAAGTCG-ATGTGAAGAGTGA-GAGTGGG-GG-CTCTGCTTTT-ATAGCCCGTAAAACAGG--TTT----TCCTACCGCGCGATC-GC-------TCAGATGTTCAGCATAGGTATT-----------TC--CAGG-TA--T-TC------CAGCGCG-TGCTA-TG------TCTAGACANCTGTCTAGACGCCAGGTGTTCA--T-CACGTGATCTG--CAGGTATTCCAGCGCACTGATTGCACTGATCGCCCTTG-G--TT-T--------TTTTGTGTGTCACTCATATTTTTTAAAAGTAGCCCTAAAAAGGGCTGTTCATGGTTTTT-TTTTTTAAAAATCTCCGGCTTCGTACGCGGGTTCTTCTATATAAAAGTGTAAGT-CA--TGATCAGCGGACGTAATGTCCTCTA--CTANT--------TGTCGAGCTCTTCTCCCCGGGAAACGTATCACNTCGACTG-TTTCCCACATCCA--GC---CTGCA--TC---AAAA-AACAANCNCCATAC-A-CTTCTTCGGTGACGT-GGTTTCTCCAGCC-GAATAAATCCCGATACTTTTTGAGTGCCGTTCAATAACGTGTAAAACTGGTAAA--TCA-TG-TACTGTA-TGAGGGAATTTTNAAGGTA--CATNTCTCGTAAACCCGNCCAAATATCCTCCGGTGTTTCATGTG-GACGCAATACATANTCAAAACACCAATTTTTAGATCNNTCCCAGCGTAATCNATGGCGACGT-CTCTGTACTAAATTTTCCCAGGTGTACATCTCCTCTACATGNGTGTTCATTTCTTCTTCCACGGTTCTGGTTGTTGACAAATCA------------TA------CTCG---AC---TT---G-T---AT-TCCG-T-GGCGGCGTCTCTCTCTTAAAATTCTC-CGTG---TATCCATGACTGGAGGT--CAG----ACAAGAATG-T-G---GCTATACTNTAGAA-------ACCACCTGACGTGCAGGTGATT-GATCACGTGGTCTAATTGCACTCAATGACCTTTACCTATA
Reference ( family-3778 ) : NNGTCCGGGAAAAAAA-TCCTAAGCCTGGGTCTGTAGGATATTCCTGGGTAGGTAGANACTCCCTCAGTCTT-CGCCTTTTTCAGCT-GCTGTGCAATGTAAGCCTCCTGTACCTCCTGTCTATCCTCTTCNC-TCAAGAAATCTTNCTGAAGC---CCCGTCTGTTTCTGTAC-CATGTTATTCACTT-TCTTCTGAGCTCTGT-CCACGAATTC-TA-GCT-GTTTC-TGAGCCAT----GTTC---CTCAGGTCA-GGGTCTGAAGTCG-ATGTGAAGAGTGA-GAGTGGG-GG-CTCTGCTTTT-ATAGCCCGTAAAACAGG--TTT----TCCTACCGCGCGATC-GC-------TCAGATGTTCAGCATAGGTATT-----------TC--CAGG-TA--T-TC------CAGCGCG-TGCTA-TG------TCTAGACANCTGTCTAGACGCCAGGTGTTCA--T-CACGTGATCTG--CAGGTATTCCAGCGCACTGATTGCACTGATCGCCCTTG-G--TT-T--------TTTTGTGTGTCACTCATATTTTTTAAAAGTAGCCCTAAAAAGGGCTGTTCATGGTTTTT-TTTTTTAAAAATCTCCGGCTTCGTACGCGGGTTCTTCTATATAAAAGTGTAAGT-CA--TGATCAGCGGACGTAATGTCCTCTA--CTANT--------TGTCGAGCTCTTCTCCCCGGGAAACGTATCACNTCGACTG-TTTCCCACATCCA--GC---CTGCA--TC---AAAA-AACAANCNCCATAC-A-CTTCTTCGGTGACGT-GGTTTCTCCAGCC-GAATAAATCCCGATACTTTTTGAGTGCCGTTCAATAACGTGTAAAACTGGTAAA--TCA-TG-TACTGTA-TGAGGGAATTTTNAAGGTA--CATNTCTCGTAAACCCGNCCAAATATCCTCCGGTGTTTCATGTG-GACGCAATACATANTCAAAACACCAATTTTTAGATCNNTCCCAGCGTAATCNATGGCGACGT-CTCTGTACTAAATTTTCCCAGGTGTACATCTCCTCTACATGNGTGTTCATTTCTTCTTCCACGGTTCTGGTTGTTGACAAATCA------------TA------CTCG---AC---TT---G-T---AT-TCCG-T-GGCGGCGTCTCTCTCTTAAAATTCTC-CGTG---TATCCATGACTGGAGGT--CAG----ACAAGAATG-T-G---GCTATACTNTAGAA-------ACCACCTGACGTGCAGGTGATT-GATCACGTGGTCTAATTGCACTCAATGACCTTTACCTATA
gi|1 : TCCGGGAAAAAAAATCCCAAGCCTGGGTCTGTAGGATATTCCTGAGTAGGTTAAAACTCCTTCAGTCTTGGGCCTTTTTCATCTGGCTGTGT-ATGTAAGCCT-CTGTACCTCCTTTCTATCTTCTTCGCTTCAAGAAATCTTG-TGAA-CATTCCAGTCT-TTTCTGTACGCATGTTATT-ACTTGTCTTCTGAGCTCTGT-CCACGAA-TC-TATGCT-GTTTCTTGAGCCAT----GTTCATACTCAGGTCA--GGTCTGAAGTCGAATGTGAAGAGTGATGAGTGGGTGGTCTCTGCTTTTAATAGCCCGTAAAACAGGTTTTT----TCCTGCTG--------GC-------TCAG-TG-CCA--AT-GGT-TT-----------T------------T-TC------CAGCG-G-TG----TG------TCTAGACACCTGTCTGAACGCCTGGTGTTCA--TGCACGTGATCTGAACAGGT-----AGCGCACTGATTG-ACTGA
gi|10 : cggcctccatggggaggtcaactgagtgcacttttttatgcaaatgaggtcaatgtgattggtcaagccagtttgaccccagcaggggtcaagccgggctagcccggccgggtttagagtcggttttagatggccgggttagaggccggttataggtcggcctagttaagccgctggcctaaggtcaggttttagcattgtgaacgttcatgcggactttggacttggcagagcatatatgacgtttgcactgtttaaaaaatcgatacaatccaaggcataaaatctgacgtcaaaaatgtagcacacttaggaatgtgttatcgatcgcaaaaatcccagtgaatccagtaaatcctggtgtatattaaatcctgtgtattcctgtgcataatagactaaacaccaggtttaagtttacaatgtttattaaagaacaatgccaatgtaaaacatttttaaacagcaataaaaaaacagttcaagtgtttttatctttcgggctcagtttcttttcttctttaggcggttcttcagtgggtgcggggggattccacatctctaaacggtttgtaactctctcttcacgggggtttttgagcagtacgggcccaatcatctcagtgatcttctgcttttcttcaaggacagcactgatccagttgttccttatatccgcgcacttgtaacaaggatcccatttgtttggttttctttctggctggttaattctgccgtttttactggtctgcggataatctgatccgatttcttactggtctgccggaataatctgctttctggggcaaatccggcgaccaatgtcctgattttctctcgcaagtgtaaggacgggttgtcagcgtaattgtgagtgtagtcctttcctagggtttcctagatttttattccgtcacttcttccagcttcttccagcaggactgtgggtagatttccaaactcattactcacacattaattgctggtaacgatcccgtctgagtgtttgtggtaatgatcgcaaaatcttctttggttcatggccggaggctcgttctgtggttggtagaaggcccagttccagtccgttacagtctttgactctggaatCTCTACACGTGTGTTCATTTCTTCTTCCTCGGTTCTGGTTGTTGACAAATCA------------TA------CTCC---AC---TT---G-TTGGAT-TCCG-T-GGCGGCGTCTGTTT--TAAAATTCTC-CGTG---TATCCATGACTGGATGT--CAA----ACAAGAATG-T-AC--GCTATATTATAGAA-------ACCACCTGACGTGCAGATGATT-GATCACGTGGTCTAATTGCACTCAATGACCTTTAgtaggttcctcgtggcctctctggtgcc
gi|13 : TGTAAGTTCAGGTGATCAACTA--GTA-TTTCATTTT--CAAAT--------TATCGAA-TCTT-TCCC--------GTATCGCC---ACTG-TT-CCCACATCCAATGT---CTCCAGTCC---AAAC-AAC-AGCACTATAC-----CCCTCGGTTACGGAGGTTTCTTCAATCGGAATGAGTCCCG---------------TGTTCAATAGCGTGTAAAG-TGGCAA----CATTA-TACTG
gi|15 : GAAGTCG-GAATGAAGAATAA-GACT--T-GG-CACCGTTTCT-ATAGCCAGCAAGA-ATT--CTT----TCCTACCACGTGATCAGCAGACATTCCAG-TGATCAGCGCAGGTGTTATACCACGTGATCTGCAGG-TG--T-TC------CAGCGCG-TGATA-TG------
gi|16 : GTTCTACATGTTGACAAATCAAATCATGTTCATCA------TTTG---AC---TTTT-G-T---AT-TCGC-C-GGCGACGTCTCTGACTCAAAATTCTC-CGTGCTACATCCATGACTCGAGGTACCAGTAATACAAG
gi|17 : tTGTAC-CATTCCGTTGACTT-TCTTTTGAACTCTGTCCCACAAAATCTTT-GCCGGTTTC-TGTGGCACAATAGTTC---CTCTGCTCACGTGTGTGATATAG-ACGTG-CGAGTG
gi|19 : CC-GAATGAATCCCGATACTTTTTGAGTGCCGTTCAATAACGTGTAAAACTGGTAAA--CCA-TG-TACTGTA-TGAGGGAATTTTGAATGTA--CAT
gi|2 : cattgtttactcttGTCCGGGAAAAAAA-TCCTAAGCCTGGGTCTGTC--ATATTC-TGGGTAGGTAGATACTCC-TCAGTCTT-CGCCTTTTTCAGCT-GATGTGCAATGTAAGCCTCCTGTACCTCTTGTCTGTCCTCTTCTT-TCAAGACATCTTTCTGAAGC---CCTGTCTGTTTCTGTAT-CATGTTATCCACTT-TCTTCTGAGCCCTGT-CCACGAATTA-TA-GCT-GTTTC-TGAGCCAT----GTTC----TCAGGTCA-AGGTCTGAAGTCG-ATGTGAAAAGTGA-AAGCGGG-GA-CTCTGCTTTT-ATAGCCCTTAAAA-GGG--TTTATTTTCCTATCACGCGATC-GC--------CAGATGTTCAGCATAGGCATT-----------TC--CAGGCTA--TGTCTAGACACAGCGCG-TGCTA-TG------TCTAGAC------------GCCAGGTGTTCAGCC-CAGGT-ATTTA--CAGGTATTCCAGCGC
gi|2 : ggaaC-GC--------CAGGTGTTCAGCCCAGGTATT-----------TA--CAGG-TA--T-TC------CAGCGCG-TGCTG-TG------TCTAGACAGGTGTCTAAACGCCAGGTATTCA--T-CACGTGATCTG--GAGGTATTCTAGTGCACTGATTGCACAGATTGCCCTTG-GGGTT-T--------TTTTGTGTGTCACTCATATTTTTTAAAAGTAGCCCTAAAAAGGGCTGTTAATG-TTTTT-TTTTTTAAA--TCCCCGGCTTCGTACGCGGGTTATTCTATATAAAAGTGTAAGT-CA--TGATCAGCGGACGTAATGTCCTCTATACTATT--------TGTCGAGCTCTTCTTCCCCGGAAACGTATCACATCGACTG-TTTCCCATATTGA--GCGACCTGCA--TC---AAAA-AACAATCCCCATAC-A-TTTCTTAGGTGACGT-GGTTTCTCCAGCC-GAATAAATCTCGATACTTTTTGAGTGCTGTTCAATAACGTGTAAAACTGCAGAA--TCA-TG-TACTGTA-TGTAGGAATTTTGAAGGTA--TATCTCGCTTAAACCCGGCCAAATATCCTCCTGTGTTTCATGTG-GACGCAATACATTTTCAAAATACCAATTTTTAGATCTTTCCCAGCGTAATCTGTGGCGATGT-CTCTATACTAAATTTTCTCAGATGTAGATCTTCTCTACATAGGTGTTCATTTCTTCTTCCACGATTCTGGTGGTTGACAA---A------------TA------CTCA---ACTTGTT---G-T---AT-TCCG-T-GGCGGCGTCTCGCTCTTAAAATTCTC-CGTG---TATCCATGACTGGAGGT--CAG----ACCAGAATG-T-G---A----ATTCTAGAA-------ACCACCTGAAGTGCAGGTGATT-GATCACGTGG------TGCACTCCATGACgtgctgtgtctagacaggtgtctaaacgccaggtattcatcacgtgatctggaggtattctagtgcactgattgcacagattgcccttggggtttttttgtgtgtcactcatattttttaaaagtagccctaaaaagggctgttaatgtttttttttttaaatccccggcttcgtacgcgggttattctatataaaagtgtaagtcatgatcagcggacgtaatgtcctctatactatttgtcgagctcttcttccccggaaacgtatcacatcgactgtttcccatattgagcgacctgcatcaaaaaacaatccccatacatttcttaggtgacgtggtttctccagccgaataaatctcgatactttttgagtgctgttcaataacgtgtaaaactgcagaatcatgtactgtatgtaggaattttgaaggtatatctcgcttaaacccggccaaatatcctcctgtgtttcatgtggacgcaatacattttcaaaataccaatttttagatctttcccagcgtaatctgtggcgatgtctctatactaaattttctcagatgtagatcttctctacataggtgttcatttcttcttccacgattctggtggttgacaaatactcaacttgttgtattccgtggcggcgtctcgctcttaaaattctccgtgtatccatgactggaggtcagaccagaatgtgaattctagaaaccacctgaagtgcaggtgattgatcacgtggtgcactccatgacaggtgttttctgaacgttcatc
gi|20 : ggaagtccgggaaaaaaatcctaagcctgggtctgtcatattctgggtaggtagatactcctcagtcttcgcctttttcagctgatgtgcaatgtaagcctcctgtacctcttgtctgtcctcttctttcaagacatctttctgaagccctgtctgtttctgtatcatgttatccactttcttctgagccctgtccacgaattatagctgtttctgagccatgttctcaggtcaaggtctgaagtcgatgtgaaaagtgaaagcggggactctgcttttatagcccttaaaagggtttattttcctatcacgcgatcgccagatgttcagcataggcatttccaggctatgtctagacacagcgcgtgctatgtctagaCTTAAAAGTCTCGCGTG---TATCCATG-CTG-AGTT--AAG----CCAAGCA------------ATACTGTAGAA---------CGC-TGACGTACAGGTGATTGGATCGTGTGaggtgttttctgaacgttcatc
gi|21 : tcactaTTCTGCCTGTTAACAAATCA------------TATCCATCCTCGGTCAG---TT---G-T----T-TTTGCT-GGCGATTTCTTTGTCTCGAGATTATC-CGTG---CATCCATGAATCGAGGccaggtggtgtttt
gi|22 : cATCTGCGGACGTAATGTCCTCTA--CTACTATAGTATTTGTCGACTTCTTCTCCCTGGGAAACGTATCACTTTGAC
gi|23 : -GG-CTCTGCTTTT-ATAGCCCGTAAAACAGG--T
gi|3 : GTCCGGGGAAAAA--TCCTAAGCCTGGGTTTGTAGGAT---TCTGGGTAGGTAGATACACTC-CAGTCTT-TGCCTTTTTCAGCT-GCTGTGCAATGTAAGCCTGCTGTACATTCTGTCTATCTTCTTCAC-TCAAGAAATCTTTCTGAAGC---CCCGTCTGTTTCTGTAC-TATACTATCTACTT-TCTTCTGAGCCCTGT-CCACGAATTC-TA-GCT-GTTTC-TGAGCCAT----GTTC----TCAGGTCA-GGGTCTGAAGTCG-GTGTGAAGAGTGA-GAG---------------------AGCCCGTAAAAGAA---TTT----TCCTATCACGCGATC-GC--------CAGATGTTCAGCATAGGTATT-----------TC--TAGG-TA--T-TC------CAGCGCG-TGCTA-TG------TCTAGACAGCTGTCTAGACGCCAGGTGTTAA--T-CACGTGATCTG--GAGGTATTCCAGTGCACTGATTGCACTGATTGCCCTTG-G--TT-T--------TTTTGTGTGTCACTCATATTTTTTAAAAGTAGCCCTAAAAAGGGCTGTTCATGGTTTTTATTTTTTAAAAATCTCCGGCTTCGTACGCGGGTTCTTCTATATAAAAGTGTAAGT-CA--TGATCAGCCGACGTAATTTCCTCTA--CTATT--------TGTCGAGCTCTTCTCCCTGGGAAACGTATCACATCGACTG-TTTCCCACAGCCA--CT---TTGCA--TC---AAAA-AACAATCCCCATAC-A-CTTCTTAGGTGACGT-GGTTTCTCCAGCC-GAAGAAATCCCGATACTTTTTGAGTGCCGTTCAGTAACGTATACAACTGGTGAA--CCA-TG-TACTGTA-TGAGGGAATATTTAAGGTA--CATCTCTCGTAAACCCGTCCAAATATCCTCCTGTGTTTCATGTG-GACGCAATACATATTCAAAACACCAATTTTTAGATCTTTCCCAGTGTAATCTATGGCGACGT-CTCTGTACTAAATTTTCCCAGATGTATATATCCTCTACATGGGTGTTCATTTCTTCTTCTACGGTTCTGGTGGGTGACAA---A------------TA------CTCA---AC---TT---G-T---AT-TCCG-T-GGCGACGTCTCTCTCTTAAAATTCTC-CGTG---TATCCATGACTGGAGGT--CAG----ACAAGAATG------------ACTGTAGAA-------ACAACCTGACGTGCAGGTGATT-GATCATGTGG------TGCACTCAATGACCTCTACCTATA
gi|5 : atAGACTCTCTGGGCCT----CCTTTTTCAGCT-GCTGTGCTATGTAAGCCTCTTGTACCTCCTGTTTATCCTCTTCTC-TCAAGAAATCTTGTTGAATT---CCTGTCTTTTTCTGTAC-CATGTTATTCACTT-TCTTCTGAGCTCTGT-CCACGAATTC-TA-GCT-GTTTC-TGAGCCAT----GTTC----TCAGGTCA-GGGTGTGAAGTCG-ATGTGAAGTGTGA-GAGTGTG-GG-CTCTGCTTTT-ATAGCCCGTAAAACAGG--TTT----TTCCAGCGCCTGCTG-GC-------TCAG-TGC-CA--ATGGGTTTT-----------TC--CCAG-TGCCT-GC------TGGCTCGATGCCAATGGGTTTTTCCAGCGCTCTGTCTAGACGCCAGGTGTTCA--T-CACGTGATCTG--CAGGTA-----GTGCACTGATTAACCTTAACGAACTTGTG--TTATGCCAGGGATTTTGTGTGTCACTCATATTTGTTTAAAGTAGCCCTAAAAAGGGCTGTGCATGGTTTTT-TATTT-AAAAATATCCGGCTTCATACGCGGGCTCTTCTATTTACATGTATAAGT-CA--TGATCTTCGGACGTAATGTCCTGTA--CTAGA--------TGTCGAGCTCTTCTCCCTGGGAAAGGTATCACTTTGACTG-TTTCCCACATCCA--GC---CTGCA--TC---CCAA-AACAACAGCCATAC-A-CTTCTCCGGTGACGT-GGTTTCTCCAGTC-GAATAAATCCTGATACTTTTTGAGTGCCGTTCAATAACGTGTAAAACTGGTAAA--TCA-TG-TACTGTA-TCAGGGACTTTTTAAGGTA--CATGTCTCGTAAACCCGTCCAAATATCCTCTGGTGTTTCATGTG-GACGCAATACATAGTCAAAACACAAATTTTTAGATCGGTCCCAGCGTAATCGATGGTGACAT-CTCTGTACTAAATTTGCCCAAGTGTACATCTCCTCTACATAAA------------CTTCTACGA---TG---GTTGATAA---A------------TA------TTTT---AC---TTGCGG-T---AT-TCCG-T-G
gi|7 : aTCGAGCTCTTCTCCCCGGGAGACGTGTCACTTTGACGGATTTCCCACATCCA---C---CTGCA--TCCCCAAAACAACAAAC--CATACCATCTTCTTCG-TGACGT-GGTTTC--CAGC--GAATAAATCCTGATACTTTTTGAGTGCCGTTCAATAACGT-TAAAACTGGTAAAATTCG-TGATACTGTACTCAGGGAATTTTCA-GGTAGCCATG-CTCGTAAACC--GCCAA-TATCCTCTGGTGTTTCATGTGTGACGCAATACATAGTCAAAACACCAATTTTTAGATCGGCTCCAGCGTAATCGATGGCGACATACTCTGTATTAAA-TTTCCCAGGTGT-TACCATCTCTACATAAA------------CTTCTACG---CTG---GTTGATAATTC---------------------CTCC---AC---TT---GTT---GTATCCG-TGGGCGGTGTC-CGCTCTTAAAAGTCTC-CGTG---TATCCATGACTGGAGGT--CAT----ACAAGAATGAT-GCCAGCTA-ACGCTACAAGTGGTTGATCACGTGATGCACAGGTGCTT-GATCACGTGATGCGATTAC---------CTTTTACCTATA
gi|9 : CCCAGGTGTACATCTCCTCTACATGTGTGTTAATTTCTTCTTTCTCGGTTCTGGTTGTTGACAAATCA------------TA------CTCG---ACTTGTT---G-T---AT-TCTG-T-GGCGACGTCTCTCTCTTATAATTCTC-CGTG---TATCCACGACTTGAGGT--CAG----ACAAGAATG-TGG---GCTATATTCTAGAA-------ACCACCTGCTGTGCAAGTGATT-GATCATGTGGTCTAATTGCACTCAATGACCTTTACCTATAaatacagggttttctgaaacgttcatg
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): AAAAGACGATTACATAATCACAAGCCTATTATCAATAAATTGGATCGTCAAAAGGCGTACCGCGCAACGAACTTAGGAGTTAGTGGGATCGCACCTAAAATCAAATAGCAGTAAATATCCTGTGTAATCAATAAAAGAATAACACAAAATATAGTTTAACATGTTATTAAAGCAAAAAAAAGAACAATAAACTAAAATGAGTAATAAACAGTAAAAAAAACTAATAGATCAAGTTTCTGGATTACTAGTTCGGTTCTAGATAACTTCTTCTCTTTTTTAGCAGGTGGGATTCATTTCAGTAAGCATGTGCGGAGAGGATTCACAATACCTTTTCTCAAAAATTATTCTTTTATAACTCTCTCATTACAGCCAAAAGGTTTTGACCAAGGTACGGGCCCAATCATTTCACTCAGAATCTCCGTCTAGTTCTTAGCGGACATCACTGCACAATTACCCCGCTTGTCCTGCTAATTTCAATCCTAGGGGCAGCGGGGGTGCTAGCACACGAATCCCTTTGTATGGATTTTCTTCTGCATGGTCTACGAGGCACAGAGATTGCCTAGGAAAAACTAACATTTGCGCTCGTGCGAGATAATCTTCATACCCCGAAAAGTTCTTGCGCGATTAATGGCCTCGCAATTTAATGATCGGGGCAATCCGGCGACCAATGGACATCCTTTGTTGAATCCCCCCGCAAGTAGAATAAGGCTCCGTGGTTGCTAGACGTTCACCTGATTAATTTTTAAGAAGAGATGTTGTTATATTCCCTTCACTAGAGGGATTGATTGAAGCTAGAATGTAAAATCTTTTTTCTCTTCTCGCTCTTTCATCAGTCTTCTGATCAGAACAGTACACTGTGGTAATCGATTATACAATCTCATCTTGACTCATTACACCCTATTATGAGCGGAGATTAAACAATCCAACCGTGCTAGTGTCCTGTGTAATGTAAGTACAGCATAAAGTCTTCTATTTGTTTCATGGTACTGAAGGTT
Unaligned ( gi|6 ): TCAACTGACCGCGACTATTTTCATGCACACATGAGGCACCCATGTGTCAGCAGTTGACGCCCACAGTCTTGAAGTCGCCGCTAGCGCCGGCCAGCCCAGCCCCGCGATTTAGAGCCCCGGCGTTTATAGCCCGGTGAGCCCGGGCCGGTTTATAGCATGCTTGTTTTAAGCCCGTGAGCCCGCCGGGGTCGGTTTATAATGGTCCCGTCCGATTTACTGCCGTTACTTTTCGTCTTTGAGTTCGCGCCCGGAAAAGAGCTTATAATCTCTGAGAAGAAGATCAGACTTGAAGGAACATATACCAACTGACCTCCAAGAAAGATATCACACTTAGGCAATGTTTATCGATCGCAGAAAATCCAGTGAAATCCCAGTGTTACTCCCTCAACATGTGAAATTACGCTATCGATCGCATATATAACTCCTTTTGTATTTAAAATCCTGTGTCCCTCCTAACAGCATAATAAAAACTAACACCAGTTTAATTTACATGGATCTAATAAGCAAGCAACAACATCATAAACACGTTTTAAACAGCATAAAAATGCAGTTCAGGTTTACAATGTAAAACAGCCTTCAGCATAAAAAACAGTTCAAGTTTTTTTTACTTGCTCTAGCTCAGTAAGCATCCTATGTCTAAATAGGCGCCGACGTAGTCGAAATAATCCCATCCTACGCGATTTACTCTCTCTCACAGCAGTGTTGATCATGTGAGACAGTAACGGGCCCAAAATCATCTATCGGCATCTCCGGCTACGTTCTTGCGGACAAGTCACTGATCCAGTGTCCTTAAATTTCCCGCATGTGTGACAGATCCCTTTGTTTGGTTATTCTTCTGCTGGATGCCTTCTTACTGGTCTTCTAGTCATTACGGTCTGCGCGATAATCATGCTTTCTGGGGGCCATCCGGCGAGCAACAAATGTCCTGTTTC
Unaligned ( gi|8 ): AAGACAATGCCAGTAGTATAAGGCGCCTCCATAGCCGGTCCAACTGAGTGCACTTTTTATGCAAATGAGGTCAATGCTGATTGGTCAAGCAGTTTGACCCCAACAGGGGTCCTAGCCCTGGTTTAGAGTCCGGTTTATAGCACGGCCTGGGTTTATAGCCAGGCCGGGTCTAGAGCCCGGTTTATAGCATGACCGGGATTAGAGGGGTGTTTATAGGTCGACCTAGTTAAGCCGCTGGCCTAGAGTGCAGGTTTTAGCATTATGACGTCATGCGGTTTTGGAGAGCATTATGACGTCACAATGTAGCACACTTAGGAATGTGTTATCGATCGCATAAAATCCAGTGAAATCCGGTGTATTCCTGTGTATTAGATCCTGTGTATTCCTGTCCATAATAAAGACTAACACCAGGTTTAAGTT
Unaligned ( gi|11 ): ACGGCCTCATGGCTGGTTCAACTGAGGTGCACTTTTTAGGCAAATGAGGTCAATGCTGATTGGTCAGCAGTTTGACCCCAGCAGGGGTCGCCGGGCTAGCCCGGCCAGGCCCGGCCGGTCTAGAGCCCGGTGAGCCCGGCCGGGTTTAGAGCCGGTCGGGTTTATAGCCGCGTGAGCCCGGCCGGGTTTATAGCACGGC
Unaligned ( gi|12 ): ATAACGGGCCTCGATGGCTGGTACAACTGAGTGCACTTTTTATGCAAATGAGGTAAAGCAGGGAGGCTTCTGATTGGTCTTGAAAGCGGTGTCGGGCCTCCATGGCCGGTTCAATATCTAGGACGGAGTCAAGCAGTTTGACCTCAGCAGGAGTCGTCGGGCGCGGGATAGCCCGGTTTATAGCGCGGCCGGGTTTAG
Unaligned ( gi|14 ): ACGGCCTACATGGCTGGTTCAACTGAGTGAACTTTTTAGGCAAATGAGGTCAATGCTGATGGTAGCAGTTTGACCCCGCAGGGGTCGCCCGGCTAGCCCGGCAGCCGGCCGGTCTAGAGCCCGGTGAGCCGGCCGGGTTTAGAGCCCGGTCGGGTTTTATAGCCCGGTGAGCCCGGCCGGGTT
Unaligned ( gi|18 ): AAGGAGCATTTTCATTCATTTATGCAAATGAGTATCACAATACCGTGTGTCAACGCAGTTTGAGGACCCCGCAGGGGACGCCGGGCTAGCACGGCAACCCCAGCCGG
Alignments
lowQualScore : 22 111 1 1 22222 1111 3333 11 22222 111111 1111 33333333 1 333333333333333 11111 111111 111111 1111 11 11111 5555555555555555 1 1 11 11 22222222 2222222 11 111 111 11 1 1 111 333333333333333333333333 1111 111 111 1111 555555555555 2222222 222222
lowQualScore : 00 6 7 6 1 99 999 0 9 8 1 0 77 00000 4 8 8 8 8 8 6 8 8 8 8 7777 4444 11 6 8 00000 6 6 222222 7777 1 1 0 6 99999999 8 77 6 1 6 444444444444444 00000 6 999999 6 2 6 999999 99 1 3333 11 00000 8 0 6666666666666666 6 3 7 7 0 33 1 0 0 11 1 99999999 1 6 222 8 0 6666666 11 444 8 0 1 8 666 8 0 6 1 99 6 6 8 1 0 11 44 2 1 3 2 0 1 22 1 0 3 22 1 7 2 11 333 999999999999999999999999 2222 777 555 5 888 5 5 5 5 888 77 2222 222222222222 1 1111111 2 6 444444 0 0
lowQualScore : .. . . . . .. ... . . . . . .. ..... . . . . . . . . . . . .... .... .. . . ..... . . ...... .... . . . . ........ . .. . . . ............... ..... . ...... . . . ...... .. . .... .. ..... . . ................ . . . . . .. . . . .. . ........ . . ... . . ....... .. ... . . . . ... . . . . .. . . . . . .. .. . . . . . . .. . . . .. . . . .. ... ........................ .... ... ... . ... . . . . ... .. .... ............ . ....... . . ...... . .
lowQualScore : 77 7 3 7 0 88 888 0 8 8 0 0 55 22222 2 8 0 2 0 0 0 0 0 0 0 0000 0000 22 7 0 55555 7 7 888888 0000 4 4 6 7 77777777 0 77 7 7 0 333333333333333 88888 7 222222 7 5 7 222222 44 4 0000 00 22222 8 7 3333333333333333 7 3 3 3 0 88 4 8 8 00 0 00000000 0 3 333 0 8 4444444 00 000 0 8 0 8 888 0 8 7 0 22 7 7 0 0 8 00 22 5 0 2 5 0 0 00 0 0 2 22 0 3 5 88 999 000000000000000000000000 1111 555 666 0 888 0 0 0 0 888 99 1111 777777777777 0 7777777 5 7 000000 8 6
consensus : NNGTCCGGGAAAAAAA-TCCTAAGCCTGGGTCTGTAGGATATTCCTGGGTAGGTAGANACTCCCTCAGTCTT-CGCCTTTTTCAGCT-GCTGTGCAATGTAAGCCTCCTGTACCTCCTGTCTATCCTCTTCNC-TCAAGAAATCTTNCTGAAGC---CCCGTCTGTTTCTGTAC-CATGTTATTCACTT-TCTTCTGAGCTCTGT-CCACGAATTC-TA-GCT-GTTTC-TGAGCCAT----GTTC---CTCAGGTCA-GGGTCTGAAGTCG-ATGTGAAGAGTGA-GAGTGGG-GG-CTCTGCTTTT-ATAGCCCGTAAAACAGG--TTT----TCCTACCGCGCGATC-GC-------TCAGATGTTCAGCATAGGTATT-----------TC--CAGG-TA--T-TC------CAGCGCG-TGCTA-TG------TCTAGACANCTGTCTAGACGCCAGGTGTTCA--T-CACGTGATCTG--CAGGTATTCCAGCGCACTGATTGCACTGATCGCCCTTG-G--TT-T--------TTTTGTGTGTCACTCATATTTTTTAAAAGTAGCCCTAAAAAGGGCTGTTCATGGTTTTT-TTTTTTAAAAATCTCCGGCTTCGTACGCGGGTTCTTCTATATAAAAGTGTAAGT-CA--TGATCAGCGGACGTAATGTCCTCTA--CTANT--------TGTCGAGCTCTTCTCCCCGGGAAACGTATCACNTCGACTG-TTTCCCACATCCA--GC---CTGCA--TC---AAAA-AACAANCNCCATAC-A-CTTCTTCGGTGACGT-GGTTTCTCCAGCC-GAATAAATCCCGATACTTTTTGAGTGCCGTTCAATAACGTGTAAAACTGGTAAA--TCA-TG-TACTGTA-TGAGGGAATTTTNAAGGTA--CATNTCTCGTAAACCCGNCCAAATATCCTCCGGTGTTTCATGTG-GACGCAATACATANTCAAAACACCAATTTTTAGATCNNTCCCAGCGTAATCNATGGCGACGT-CTCTGTACTAAATTTTCCCAGGTGTACATCTCCTCTACATGNGTGTTCATTTCTTCTTCCACGGTTCTGGTTGTTGACAAATCA------------TA------CTCG---AC---TT---G-T---AT-TCCG-T-GGCGGCGTCTCTCTCTTAAAATTCTC-CGTG---TATCCATGACTGGAGGT--CAG----ACAAGAATG-T-G---GCTATACTNTAGAA-------ACCACCTGACGTGCAGGTGATT-GATCACGTGGTCTAATTGCACTCAATGACCTTTACCTATA
Reference ( family-3778 ) : NNGTCCGGGAAAAAAA-TCCTAAGCCTGGGTCTGTAGGATATTCCTGGGTAGGTAGANACTCCCTCAGTCTT-CGCCTTTTTCAGCT-GCTGTGCAATGTAAGCCTCCTGTACCTCCTGTCTATCCTCTTCNC-TCAAGAAATCTTNCTGAAGC---CCCGTCTGTTTCTGTAC-CATGTTATTCACTT-TCTTCTGAGCTCTGT-CCACGAATTC-TA-GCT-GTTTC-TGAGCCAT----GTTC---CTCAGGTCA-GGGTCTGAAGTCG-ATGTGAAGAGTGA-GAGTGGG-GG-CTCTGCTTTT-ATAGCCCGTAAAACAGG--TTT----TCCTACCGCGCGATC-GC-------TCAGATGTTCAGCATAGGTATT-----------TC--CAGG-TA--T-TC------CAGCGCG-TGCTA-TG------TCTAGACANCTGTCTAGACGCCAGGTGTTCA--T-CACGTGATCTG--CAGGTATTCCAGCGCACTGATTGCACTGATCGCCCTTG-G--TT-T--------TTTTGTGTGTCACTCATATTTTTTAAAAGTAGCCCTAAAAAGGGCTGTTCATGGTTTTT-TTTTTTAAAAATCTCCGGCTTCGTACGCGGGTTCTTCTATATAAAAGTGTAAGT-CA--TGATCAGCGGACGTAATGTCCTCTA--CTANT--------TGTCGAGCTCTTCTCCCCGGGAAACGTATCACNTCGACTG-TTTCCCACATCCA--GC---CTGCA--TC---AAAA-AACAANCNCCATAC-A-CTTCTTCGGTGACGT-GGTTTCTCCAGCC-GAATAAATCCCGATACTTTTTGAGTGCCGTTCAATAACGTGTAAAACTGGTAAA--TCA-TG-TACTGTA-TGAGGGAATTTTNAAGGTA--CATNTCTCGTAAACCCGNCCAAATATCCTCCGGTGTTTCATGTG-GACGCAATACATANTCAAAACACCAATTTTTAGATCNNTCCCAGCGTAATCNATGGCGACGT-CTCTGTACTAAATTTTCCCAGGTGTACATCTCCTCTACATGNGTGTTCATTTCTTCTTCCACGGTTCTGGTTGTTGACAAATCA------------TA------CTCG---AC---TT---G-T---AT-TCCG-T-GGCGGCGTCTCTCTCTTAAAATTCTC-CGTG---TATCCATGACTGGAGGT--CAG----ACAAGAATG-T-G---GCTATACTNTAGAA-------ACCACCTGACGTGCAGGTGATT-GATCACGTGGTCTAATTGCACTCAATGACCTTTACCTATA
gi|1 : TCCGGGAAAAAAAATCCCAAGCCTGGGTCTGTAGGATATTCCTGAGTAGGTTAAAACTCCTTCAGTCTTGGGCCTTTTTCATCTGGCTGTGT-ATGTAAGCCT-CTGTACCTCCTTTCTATCTTCTTCGCTTCAAGAAATCTTG-TGAA-CATTCCAGTCT-TTTCTGTACGCATGTTATT-ACTTGTCTTCTGAGCTCTGT-CCACGAA-TC-TATGCT-GTTTCTTGAGCCAT----GTTCATACTCAGGTCA--GGTCTGAAGTCGAATGTGAAGAGTGATGAGTGGGTGGTCTCTGCTTTTAATAGCCCGTAAAACAGGTTTTT----TCCTGCTG--------GC-------TCAG-TG-CCA--AT-GGT-TT-----------T------------T-TC------CAGCG-G-TG----TG------TCTAGACACCTGTCTGAACGCCTGGTGTTCA--TGCACGTGATCTGAACAGGT-----AGCGCACTGATTG-ACTGA
gi|10 : cggcctccatggggaggtcaactgagtgcacttttttatgcaaatgaggtcaatgtgattggtcaagccagtttgaccccagcaggggtcaagccgggctagcccggccgggtttagagtcggttttagatggccgggttagaggccggttataggtcggcctagttaagccgctggcctaaggtcaggttttagcattgtgaacgttcatgcggactttggacttggcagagcatatatgacgtttgcactgtttaaaaaatcgatacaatccaaggcataaaatctgacgtcaaaaatgtagcacacttaggaatgtgttatcgatcgcaaaaatcccagtgaatccagtaaatcctggtgtatattaaatcctgtgtattcctgtgcataatagactaaacaccaggtttaagtttacaatgtttattaaagaacaatgccaatgtaaaacatttttaaacagcaataaaaaaacagttcaagtgtttttatctttcgggctcagtttcttttcttctttaggcggttcttcagtgggtgcggggggattccacatctctaaacggtttgtaactctctcttcacgggggtttttgagcagtacgggcccaatcatctcagtgatcttctgcttttcttcaaggacagcactgatccagttgttccttatatccgcgcacttgtaacaaggatcccatttgtttggttttctttctggctggttaattctgccgtttttactggtctgcggataatctgatccgatttcttactggtctgccggaataatctgctttctggggcaaatccggcgaccaatgtcctgattttctctcgcaagtgtaaggacgggttgtcagcgtaattgtgagtgtagtcctttcctagggtttcctagatttttattccgtcacttcttccagcttcttccagcaggactgtgggtagatttccaaactcattactcacacattaattgctggtaacgatcccgtctgagtgtttgtggtaatgatcgcaaaatcttctttggttcatggccggaggctcgttctgtggttggtagaaggcccagttccagtccgttacagtctttgactctggaatCTCTACACGTGTGTTCATTTCTTCTTCCTCGGTTCTGGTTGTTGACAAATCA------------TA------CTCC---AC---TT---G-TTGGAT-TCCG-T-GGCGGCGTCTGTTT--TAAAATTCTC-CGTG---TATCCATGACTGGATGT--CAA----ACAAGAATG-T-AC--GCTATATTATAGAA-------ACCACCTGACGTGCAGATGATT-GATCACGTGGTCTAATTGCACTCAATGACCTTTAgtaggttcctcgtggcctctctggtgcc
gi|13 : TGTAAGTTCAGGTGATCAACTA--GTA-TTTCATTTT--CAAAT--------TATCGAA-TCTT-TCCC--------GTATCGCC---ACTG-TT-CCCACATCCAATGT---CTCCAGTCC---AAAC-AAC-AGCACTATAC-----CCCTCGGTTACGGAGGTTTCTTCAATCGGAATGAGTCCCG---------------TGTTCAATAGCGTGTAAAG-TGGCAA----CATTA-TACTG
gi|15 : GAAGTCG-GAATGAAGAATAA-GACT--T-GG-CACCGTTTCT-ATAGCCAGCAAGA-ATT--CTT----TCCTACCACGTGATCAGCAGACATTCCAG-TGATCAGCGCAGGTGTTATACCACGTGATCTGCAGG-TG--T-TC------CAGCGCG-TGATA-TG------
gi|16 : GTTCTACATGTTGACAAATCAAATCATGTTCATCA------TTTG---AC---TTTT-G-T---AT-TCGC-C-GGCGACGTCTCTGACTCAAAATTCTC-CGTGCTACATCCATGACTCGAGGTACCAGTAATACAAG
gi|17 : tTGTAC-CATTCCGTTGACTT-TCTTTTGAACTCTGTCCCACAAAATCTTT-GCCGGTTTC-TGTGGCACAATAGTTC---CTCTGCTCACGTGTGTGATATAG-ACGTG-CGAGTG
gi|19 : CC-GAATGAATCCCGATACTTTTTGAGTGCCGTTCAATAACGTGTAAAACTGGTAAA--CCA-TG-TACTGTA-TGAGGGAATTTTGAATGTA--CAT
gi|2 : cattgtttactcttGTCCGGGAAAAAAA-TCCTAAGCCTGGGTCTGTC--ATATTC-TGGGTAGGTAGATACTCC-TCAGTCTT-CGCCTTTTTCAGCT-GATGTGCAATGTAAGCCTCCTGTACCTCTTGTCTGTCCTCTTCTT-TCAAGACATCTTTCTGAAGC---CCTGTCTGTTTCTGTAT-CATGTTATCCACTT-TCTTCTGAGCCCTGT-CCACGAATTA-TA-GCT-GTTTC-TGAGCCAT----GTTC----TCAGGTCA-AGGTCTGAAGTCG-ATGTGAAAAGTGA-AAGCGGG-GA-CTCTGCTTTT-ATAGCCCTTAAAA-GGG--TTTATTTTCCTATCACGCGATC-GC--------CAGATGTTCAGCATAGGCATT-----------TC--CAGGCTA--TGTCTAGACACAGCGCG-TGCTA-TG------TCTAGAC------------GCCAGGTGTTCAGCC-CAGGT-ATTTA--CAGGTATTCCAGCGC
gi|2 : ggaaC-GC--------CAGGTGTTCAGCCCAGGTATT-----------TA--CAGG-TA--T-TC------CAGCGCG-TGCTG-TG------TCTAGACAGGTGTCTAAACGCCAGGTATTCA--T-CACGTGATCTG--GAGGTATTCTAGTGCACTGATTGCACAGATTGCCCTTG-GGGTT-T--------TTTTGTGTGTCACTCATATTTTTTAAAAGTAGCCCTAAAAAGGGCTGTTAATG-TTTTT-TTTTTTAAA--TCCCCGGCTTCGTACGCGGGTTATTCTATATAAAAGTGTAAGT-CA--TGATCAGCGGACGTAATGTCCTCTATACTATT--------TGTCGAGCTCTTCTTCCCCGGAAACGTATCACATCGACTG-TTTCCCATATTGA--GCGACCTGCA--TC---AAAA-AACAATCCCCATAC-A-TTTCTTAGGTGACGT-GGTTTCTCCAGCC-GAATAAATCTCGATACTTTTTGAGTGCTGTTCAATAACGTGTAAAACTGCAGAA--TCA-TG-TACTGTA-TGTAGGAATTTTGAAGGTA--TATCTCGCTTAAACCCGGCCAAATATCCTCCTGTGTTTCATGTG-GACGCAATACATTTTCAAAATACCAATTTTTAGATCTTTCCCAGCGTAATCTGTGGCGATGT-CTCTATACTAAATTTTCTCAGATGTAGATCTTCTCTACATAGGTGTTCATTTCTTCTTCCACGATTCTGGTGGTTGACAA---A------------TA------CTCA---ACTTGTT---G-T---AT-TCCG-T-GGCGGCGTCTCGCTCTTAAAATTCTC-CGTG---TATCCATGACTGGAGGT--CAG----ACCAGAATG-T-G---A----ATTCTAGAA-------ACCACCTGAAGTGCAGGTGATT-GATCACGTGG------TGCACTCCATGACgtgctgtgtctagacaggtgtctaaacgccaggtattcatcacgtgatctggaggtattctagtgcactgattgcacagattgcccttggggtttttttgtgtgtcactcatattttttaaaagtagccctaaaaagggctgttaatgtttttttttttaaatccccggcttcgtacgcgggttattctatataaaagtgtaagtcatgatcagcggacgtaatgtcctctatactatttgtcgagctcttcttccccggaaacgtatcacatcgactgtttcccatattgagcgacctgcatcaaaaaacaatccccatacatttcttaggtgacgtggtttctccagccgaataaatctcgatactttttgagtgctgttcaataacgtgtaaaactgcagaatcatgtactgtatgtaggaattttgaaggtatatctcgcttaaacccggccaaatatcctcctgtgtttcatgtggacgcaatacattttcaaaataccaatttttagatctttcccagcgtaatctgtggcgatgtctctatactaaattttctcagatgtagatcttctctacataggtgttcatttcttcttccacgattctggtggttgacaaatactcaacttgttgtattccgtggcggcgtctcgctcttaaaattctccgtgtatccatgactggaggtcagaccagaatgtgaattctagaaaccacctgaagtgcaggtgattgatcacgtggtgcactccatgacaggtgttttctgaacgttcatc
gi|20 : ggaagtccgggaaaaaaatcctaagcctgggtctgtcatattctgggtaggtagatactcctcagtcttcgcctttttcagctgatgtgcaatgtaagcctcctgtacctcttgtctgtcctcttctttcaagacatctttctgaagccctgtctgtttctgtatcatgttatccactttcttctgagccctgtccacgaattatagctgtttctgagccatgttctcaggtcaaggtctgaagtcgatgtgaaaagtgaaagcggggactctgcttttatagcccttaaaagggtttattttcctatcacgcgatcgccagatgttcagcataggcatttccaggctatgtctagacacagcgcgtgctatgtctagaCTTAAAAGTCTCGCGTG---TATCCATG-CTG-AGTT--AAG----CCAAGCA------------ATACTGTAGAA---------CGC-TGACGTACAGGTGATTGGATCGTGTGaggtgttttctgaacgttcatc
gi|21 : tcactaTTCTGCCTGTTAACAAATCA------------TATCCATCCTCGGTCAG---TT---G-T----T-TTTGCT-GGCGATTTCTTTGTCTCGAGATTATC-CGTG---CATCCATGAATCGAGGccaggtggtgtttt
gi|22 : cATCTGCGGACGTAATGTCCTCTA--CTACTATAGTATTTGTCGACTTCTTCTCCCTGGGAAACGTATCACTTTGAC
gi|23 : -GG-CTCTGCTTTT-ATAGCCCGTAAAACAGG--T
gi|3 : GTCCGGGGAAAAA--TCCTAAGCCTGGGTTTGTAGGAT---TCTGGGTAGGTAGATACACTC-CAGTCTT-TGCCTTTTTCAGCT-GCTGTGCAATGTAAGCCTGCTGTACATTCTGTCTATCTTCTTCAC-TCAAGAAATCTTTCTGAAGC---CCCGTCTGTTTCTGTAC-TATACTATCTACTT-TCTTCTGAGCCCTGT-CCACGAATTC-TA-GCT-GTTTC-TGAGCCAT----GTTC----TCAGGTCA-GGGTCTGAAGTCG-GTGTGAAGAGTGA-GAG---------------------AGCCCGTAAAAGAA---TTT----TCCTATCACGCGATC-GC--------CAGATGTTCAGCATAGGTATT-----------TC--TAGG-TA--T-TC------CAGCGCG-TGCTA-TG------TCTAGACAGCTGTCTAGACGCCAGGTGTTAA--T-CACGTGATCTG--GAGGTATTCCAGTGCACTGATTGCACTGATTGCCCTTG-G--TT-T--------TTTTGTGTGTCACTCATATTTTTTAAAAGTAGCCCTAAAAAGGGCTGTTCATGGTTTTTATTTTTTAAAAATCTCCGGCTTCGTACGCGGGTTCTTCTATATAAAAGTGTAAGT-CA--TGATCAGCCGACGTAATTTCCTCTA--CTATT--------TGTCGAGCTCTTCTCCCTGGGAAACGTATCACATCGACTG-TTTCCCACAGCCA--CT---TTGCA--TC---AAAA-AACAATCCCCATAC-A-CTTCTTAGGTGACGT-GGTTTCTCCAGCC-GAAGAAATCCCGATACTTTTTGAGTGCCGTTCAGTAACGTATACAACTGGTGAA--CCA-TG-TACTGTA-TGAGGGAATATTTAAGGTA--CATCTCTCGTAAACCCGTCCAAATATCCTCCTGTGTTTCATGTG-GACGCAATACATATTCAAAACACCAATTTTTAGATCTTTCCCAGTGTAATCTATGGCGACGT-CTCTGTACTAAATTTTCCCAGATGTATATATCCTCTACATGGGTGTTCATTTCTTCTTCTACGGTTCTGGTGGGTGACAA---A------------TA------CTCA---AC---TT---G-T---AT-TCCG-T-GGCGACGTCTCTCTCTTAAAATTCTC-CGTG---TATCCATGACTGGAGGT--CAG----ACAAGAATG------------ACTGTAGAA-------ACAACCTGACGTGCAGGTGATT-GATCATGTGG------TGCACTCAATGACCTCTACCTATA
gi|5 : atAGACTCTCTGGGCCT----CCTTTTTCAGCT-GCTGTGCTATGTAAGCCTCTTGTACCTCCTGTTTATCCTCTTCTC-TCAAGAAATCTTGTTGAATT---CCTGTCTTTTTCTGTAC-CATGTTATTCACTT-TCTTCTGAGCTCTGT-CCACGAATTC-TA-GCT-GTTTC-TGAGCCAT----GTTC----TCAGGTCA-GGGTGTGAAGTCG-ATGTGAAGTGTGA-GAGTGTG-GG-CTCTGCTTTT-ATAGCCCGTAAAACAGG--TTT----TTCCAGCGCCTGCTG-GC-------TCAG-TGC-CA--ATGGGTTTT-----------TC--CCAG-TGCCT-GC------TGGCTCGATGCCAATGGGTTTTTCCAGCGCTCTGTCTAGACGCCAGGTGTTCA--T-CACGTGATCTG--CAGGTA-----GTGCACTGATTAACCTTAACGAACTTGTG--TTATGCCAGGGATTTTGTGTGTCACTCATATTTGTTTAAAGTAGCCCTAAAAAGGGCTGTGCATGGTTTTT-TATTT-AAAAATATCCGGCTTCATACGCGGGCTCTTCTATTTACATGTATAAGT-CA--TGATCTTCGGACGTAATGTCCTGTA--CTAGA--------TGTCGAGCTCTTCTCCCTGGGAAAGGTATCACTTTGACTG-TTTCCCACATCCA--GC---CTGCA--TC---CCAA-AACAACAGCCATAC-A-CTTCTCCGGTGACGT-GGTTTCTCCAGTC-GAATAAATCCTGATACTTTTTGAGTGCCGTTCAATAACGTGTAAAACTGGTAAA--TCA-TG-TACTGTA-TCAGGGACTTTTTAAGGTA--CATGTCTCGTAAACCCGTCCAAATATCCTCTGGTGTTTCATGTG-GACGCAATACATAGTCAAAACACAAATTTTTAGATCGGTCCCAGCGTAATCGATGGTGACAT-CTCTGTACTAAATTTGCCCAAGTGTACATCTCCTCTACATAAA------------CTTCTACGA---TG---GTTGATAA---A------------TA------TTTT---AC---TTGCGG-T---AT-TCCG-T-G
gi|7 : aTCGAGCTCTTCTCCCCGGGAGACGTGTCACTTTGACGGATTTCCCACATCCA---C---CTGCA--TCCCCAAAACAACAAAC--CATACCATCTTCTTCG-TGACGT-GGTTTC--CAGC--GAATAAATCCTGATACTTTTTGAGTGCCGTTCAATAACGT-TAAAACTGGTAAAATTCG-TGATACTGTACTCAGGGAATTTTCA-GGTAGCCATG-CTCGTAAACC--GCCAA-TATCCTCTGGTGTTTCATGTGTGACGCAATACATAGTCAAAACACCAATTTTTAGATCGGCTCCAGCGTAATCGATGGCGACATACTCTGTATTAAA-TTTCCCAGGTGT-TACCATCTCTACATAAA------------CTTCTACG---CTG---GTTGATAATTC---------------------CTCC---AC---TT---GTT---GTATCCG-TGGGCGGTGTC-CGCTCTTAAAAGTCTC-CGTG---TATCCATGACTGGAGGT--CAT----ACAAGAATGAT-GCCAGCTA-ACGCTACAAGTGGTTGATCACGTGATGCACAGGTGCTT-GATCACGTGATGCGATTAC---------CTTTTACCTATA
gi|9 : CCCAGGTGTACATCTCCTCTACATGTGTGTTAATTTCTTCTTTCTCGGTTCTGGTTGTTGACAAATCA------------TA------CTCG---ACTTGTT---G-T---AT-TCTG-T-GGCGACGTCTCTCTCTTATAATTCTC-CGTG---TATCCACGACTTGAGGT--CAG----ACAAGAATG-TGG---GCTATATTCTAGAA-------ACCACCTGCTGTGCAAGTGATT-GATCATGTGGTCTAATTGCACTCAATGACCTTTACCTATAaatacagggttttctgaaacgttcatg
blockSeqs : A G A C T CT TC . A C T . TC GC T G . G . C A T . G . AATA C CG . . CGGG . . CAGG ATTT C T A AGACATTC A AT G A G ATACCACGTGATCTG TGCC G TAGACA A A A GGTTTT AG A GCC . ATTCC C TGTTATGCCAGGGA G A T A . . A TA T ATAGTATT C C ATC A GCGAC . CCC C T C CAT . . G AT . A C G GC CT C T A T T T TT T A T AT G T C GT CAT ATCAAATCATGTTCATCA GGTC TTG GCG T . A C G G CTA AC TAAT ATGCCAGCTA C GTGGTTG C G TGCGAT
blockSeqs : . . . . T T TT . A G A . TC GC C G . C . . T . . . . . . A . . TGTG . . CAGG . T C . T G TT G A A TC CTA . . . C . . AG G T . ATTCT C GTTT G . . A . . T . C . T T TTT . CT . . . T C A . . G . . . . T . GT C T A G . G GG G . T AC G T C AT GTG ATCATATCCATC G TTG TT . . . . . . . . . TGGGCTAT G . C . TCTAAT
blockSeqs : G C . . T C T . GT TT T T . T . . T . . . . . . G . . TT . . ATT . T C . . A TT G A A TA TG . . . C . . CT G T . ATTCC A . . A . T . C T ATC . GC . . . C G A . . A . . . . T . G . G . G . G GG G . . AC A T A GT CCT ATCATA A . . . . . . . . . . . TGA G . G . .
blockSeqs : . C . . T . . . . . . G . . . . . GGG . G T . . . TT G A A TC TA . . . C . . . . T . A T . G . C T TTT . C . . . A . A . . G . . . . C . T A . . GT GTG ATA A . . . . . . . . . . . AT C . C . .
blockSeqs : . . . GAA . . . C . G T TC TA . . . C . . C C TTT . . . . . T . . A GTT ATA T . . . . . . . . . . . . C . . .
blockSeqs : . . ATA C . . . . . . . . . . .
blockSeqs : . TTC G . . . . . . . . .
blockSeqCons : **** G* C**** GNN*** ******** TT TC************* TA*** T*** ** ATTCC TTT C****** ** A** ATA********************* ***
originalCons : NNGTCCGGGAAAAAAA-TCCTAAGCCTGGGTCTGTAGGATATTCCTGGGTAGGTAGANACTCCCTCAGTCTT-CGCCTTTTTCAGCT-GCTGTGCAATGTAAGCCTCCTGTACCTCCTGTCTATCCTCTTCNC-TCAAGAAATCTTNCTGAAGC---CCCGTCTGTTTCTGTAC-CATGTTATTCACTT-TCTTCTGAGCTCTGT-CCACGAATTC-TA-GCT-GTTTC-TGAGCCAT----GTTC---CTCAGGTCA-GGGTCTGAAGTCG-ATGTGAAGAGTGA-GAGTGGG-GG-CTCTGCTTTT-ATAGCCCGTAAAACAGG--TTT----TCCTACCGCGCGATC-GC-------TCAGATGTTCAGCATAGGTATT-----------TC--CAGG-TA--T-TC------CAGCGCG-TGCTA-TG------TCTAGACANCTGTCTAGACGCCAGGTGTTCA--T-CACGTGATCTG--CAGGTATTCCAGCGCACTGATTGCACTGATCGCCCTTG-G--TT-T--------TTTTGTGTGTCACTCATATTTTTTAAAAGTAGCCCTAAAAAGGGCTGTTCATGGTTTTT-TTTTTTAAAAATCTCCGGCTTCGTACGCGGGTTCTTCTATATAAAAGTGTAAGT-CA--TGATCAGCGGACGTAATGTCCTCTA--CTANT--------TGTCGAGCTCTTCTCCCCGGGAAACGTATCACNTCGACTG-TTTCCCACATCCA--GC---CTGCA--TC---AAAA-AACAANCNCCATAC-A-CTTCTTCGGTGACGT-GGTTTCTCCAGCC-GAATAAATCCCGATACTTTTTGAGTGCCGTTCAATAACGTGTAAAACTGGTAAA--TCA-TG-TACTGTA-TGAGGGAATTTTNAAGGTA--CATNTCTCGTAAACCCGNCCAAATATCCTCCGGTGTTTCATGTG-GACGCAATACATANTCAAAACACCAATTTTTAGATCNNTCCCAGCGTAATCNATGGCGACGT-CTCTGTACTAAATTTTCCCAGGTGTACATCTCCTCTACATGNGTGTTCATTTCTTCTTCCACGGTTCTGGTTGTTGACAAATCA------------TA------CTCG---AC---TT---G-T---AT-TCCG-T-GGCGGCGTCTCTCTCTTAAAATTCTC-CGTG---TATCCATGACTGGAGGT--CAG----ACAAGAATG-T-G---GCTATACTNTAGAA-------ACCACCTGACGTGCAGGTGATT-GATCACGTGGTCTAATTGCACTCAATGACCTTTACCTATA
finalCons : NNGTCCGGGAAAAAAA-TCCTAAGCCTGGGTCTGTAGGATATTCCTGGGTAGGTAGANACTCCCTCAGTCTT-CGCCTTTTTCAGCT-GCTGTGCAATGTAAGCCTCCTGTACCTCCTGTCTATCCTCTTCNC-TCAAGAAATCTTNCTGAAGC---CCCGTCTGTTTCTGTAC-CATGTTATTCACTT-TCTTCTGAGCTCTGT-CCACGAATTC-TA-GCT-GTTTC-TGAGCCAT----GTTC----TCAGGTCAG-GGTCTGAAGTCG-ATGTGAAGAGTGA-GAGC----GG-CTCTGCTTTT-ATAGCCCGTAAAAGNN---TTT----TCCTACCGCGCGATC-GC--------CAGATGTTCAGCATAGGTATTTC-------------CAGGTA---T-TC------CAGCGCG-TGCTA-TG------TCTAGACANCTGTCTAGACGCCAGGTGTTCAT---CACGTGATCTG--CAGGTATTCCAGCGCACTGATTGCACTGATCGCCCTTG-G--TT-T--------TTTTGTGTGTCACTCATATTTTTTAAAAGTAGCCCTAAAAAGGGCTGTTCATGGTTTTT-TTTTTTAAAAATCTCCGGCTTCGTACGCGGGTTCTTCTATATAAAAGTGTAAGT-CA--TGATCAGCGGACGTAATGTCCTCTA--CTANT--------TGTCGAGCTCTTCTCCCCGGGAAACGTATCACTTTGACTG-TTTCCCACATCCAC------CTGCA--TC---AAAA-AACAANCNCCATACA--CTTCTTCGGTGACGT-GGTTTCTCCAGCC-GAATAAATCCCGATACTTTTTGAGTGCCGTTCAATAACGTGTAAAACTGGTAAA--TCA-TG-TACTGTA-TGAGGGAATTTTNAAGGTA--CATNTCTCGTAAACCCGNCCAAATATCCTCCGGTGTTTCATGTG-GACGCAATACATANTCAAAACACCAATTTTTAGATCNNTCCCAGCGTAATCNATGGCGACGT-CTCTGTACTAAATTTTCCCAGGTGTACATCTCCTCTACATGNGTGTTCATTTCTTCTTCCACGGTTCTGGTTGTTGACAAATA---------------------CTCG---AC---TT---G-T---AT-TCCG-T-GGCGGCGTCTCTCTCTTAAAATTCTC-CGTG---TATCCATGACTGGAGGT--CAG----ACAAGAATG-T-G---GCTATACTNTAGAA-------ACCACCTGACGTGCAGGTGATT-GATCACGTGGTCTAATTGCACTCAATGACCTTTACCTATA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): AAAAGACGATTACATAATCACAAGCCTATTATCAATAAATTGGATCGTCAAAAGGCGTACCGCGCAACGAACTTAGGAGTTAGTGGGATCGCACCTAAAATCAAATAGCAGTAAATATCCTGTGTAATCAATAAAAGAATAACACAAAATATAGTTTAACATGTTATTAAAGCAAAAAAAAGAACAATAAACTAAAATGAGTAATAAACAGTAAAAAAAACTAATAGATCAAGTTTCTGGATTACTAGTTCGGTTCTAGATAACTTCTTCTCTTTTTTAGCAGGTGGGATTCATTTCAGTAAGCATGTGCGGAGAGGATTCACAATACCTTTTCTCAAAAATTATTCTTTTATAACTCTCTCATTACAGCCAAAAGGTTTTGACCAAGGTACGGGCCCAATCATTTCACTCAGAATCTCCGTCTAGTTCTTAGCGGACATCACTGCACAATTACCCCGCTTGTCCTGCTAATTTCAATCCTAGGGGCAGCGGGGGTGCTAGCACACGAATCCCTTTGTATGGATTTTCTTCTGCATGGTCTACGAGGCACAGAGATTGCCTAGGAAAAACTAACATTTGCGCTCGTGCGAGATAATCTTCATACCCCGAAAAGTTCTTGCGCGATTAATGGCCTCGCAATTTAATGATCGGGGCAATCCGGCGACCAATGGACATCCTTTGTTGAATCCCCCCGCAAGTAGAATAAGGCTCCGTGGTTGCTAGACGTTCACCTGATTAATTTTTAAGAAGAGATGTTGTTATATTCCCTTCACTAGAGGGATTGATTGAAGCTAGAATGTAAAATCTTTTTTCTCTTCTCGCTCTTTCATCAGTCTTCTGATCAGAACAGTACACTGTGGTAATCGATTATACAATCTCATCTTGACTCATTACACCCTATTATGAGCGGAGATTAAACAATCCAACCGTGCTAGTGTCCTGTGTAATGTAAGTACAGCATAAAGTCTTCTATTTGTTTCATGGTACTGAAGGTT
Unaligned ( gi|6 ): TCAACTGACCGCGACTATTTTCATGCACACATGAGGCACCCATGTGTCAGCAGTTGACGCCCACAGTCTTGAAGTCGCCGCTAGCGCCGGCCAGCCCAGCCCCGCGATTTAGAGCCCCGGCGTTTATAGCCCGGTGAGCCCGGGCCGGTTTATAGCATGCTTGTTTTAAGCCCGTGAGCCCGCCGGGGTCGGTTTATAATGGTCCCGTCCGATTTACTGCCGTTACTTTTCGTCTTTGAGTTCGCGCCCGGAAAAGAGCTTATAATCTCTGAGAAGAAGATCAGACTTGAAGGAACATATACCAACTGACCTCCAAGAAAGATATCACACTTAGGCAATGTTTATCGATCGCAGAAAATCCAGTGAAATCCCAGTGTTACTCCCTCAACATGTGAAATTACGCTATCGATCGCATATATAACTCCTTTTGTATTTAAAATCCTGTGTCCCTCCTAACAGCATAATAAAAACTAACACCAGTTTAATTTACATGGATCTAATAAGCAAGCAACAACATCATAAACACGTTTTAAACAGCATAAAAATGCAGTTCAGGTTTACAATGTAAAACAGCCTTCAGCATAAAAAACAGTTCAAGTTTTTTTTACTTGCTCTAGCTCAGTAAGCATCCTATGTCTAAATAGGCGCCGACGTAGTCGAAATAATCCCATCCTACGCGATTTACTCTCTCTCACAGCAGTGTTGATCATGTGAGACAGTAACGGGCCCAAAATCATCTATCGGCATCTCCGGCTACGTTCTTGCGGACAAGTCACTGATCCAGTGTCCTTAAATTTCCCGCATGTGTGACAGATCCCTTTGTTTGGTTATTCTTCTGCTGGATGCCTTCTTACTGGTCTTCTAGTCATTACGGTCTGCGCGATAATCATGCTTTCTGGGGGCCATCCGGCGAGCAACAAATGTCCTGTTTC
Unaligned ( gi|8 ): AAGACAATGCCAGTAGTATAAGGCGCCTCCATAGCCGGTCCAACTGAGTGCACTTTTTATGCAAATGAGGTCAATGCTGATTGGTCAAGCAGTTTGACCCCAACAGGGGTCCTAGCCCTGGTTTAGAGTCCGGTTTATAGCACGGCCTGGGTTTATAGCCAGGCCGGGTCTAGAGCCCGGTTTATAGCATGACCGGGATTAGAGGGGTGTTTATAGGTCGACCTAGTTAAGCCGCTGGCCTAGAGTGCAGGTTTTAGCATTATGACGTCATGCGGTTTTGGAGAGCATTATGACGTCACAATGTAGCACACTTAGGAATGTGTTATCGATCGCATAAAATCCAGTGAAATCCGGTGTATTCCTGTGTATTAGATCCTGTGTATTCCTGTCCATAATAAAGACTAACACCAGGTTTAAGTT
Unaligned ( gi|11 ): ACGGCCTCATGGCTGGTTCAACTGAGGTGCACTTTTTAGGCAAATGAGGTCAATGCTGATTGGTCAGCAGTTTGACCCCAGCAGGGGTCGCCGGGCTAGCCCGGCCAGGCCCGGCCGGTCTAGAGCCCGGTGAGCCCGGCCGGGTTTAGAGCCGGTCGGGTTTATAGCCGCGTGAGCCCGGCCGGGTTTATAGCACGGC
Unaligned ( gi|12 ): ATAACGGGCCTCGATGGCTGGTACAACTGAGTGCACTTTTTATGCAAATGAGGTAAAGCAGGGAGGCTTCTGATTGGTCTTGAAAGCGGTGTCGGGCCTCCATGGCCGGTTCAATATCTAGGACGGAGTCAAGCAGTTTGACCTCAGCAGGAGTCGTCGGGCGCGGGATAGCCCGGTTTATAGCGCGGCCGGGTTTAG
Unaligned ( gi|14 ): ACGGCCTACATGGCTGGTTCAACTGAGTGAACTTTTTAGGCAAATGAGGTCAATGCTGATGGTAGCAGTTTGACCCCGCAGGGGTCGCCCGGCTAGCCCGGCAGCCGGCCGGTCTAGAGCCCGGTGAGCCGGCCGGGTTTAGAGCCCGGTCGGGTTTTATAGCCCGGTGAGCCCGGCCGGGTT
Unaligned ( gi|18 ): AAGGAGCATTTTCATTCATTTATGCAAATGAGTATCACAATACCGTGTGTCAACGCAGTTTGAGGACCCCGCAGGGGACGCCGGGCTAGCACGGCAACCCCAGCCGG
Alignments
lowQualScore : 22 111 1 1 22222 1111 2222 11 4444444444444 222 1111 333333333 333333333333333 11111 111111 111111 1111 11 11111 5555555555555555 11 1 1 11 11 22222222 1111 222 11 111 111 11 1 1 111 666666666666666666 1111 111111111 1111 555555555555 2222222 222222
lowQualScore : 00 6 7 6 1 99 999 0 9 8 1 0 77 00000 4 8 8 8 8 8 6 8 8 8 8 7777 5555 11 6 8 3333333333333 6 000 22 7777 0 1 0 6 444444444 77 6 1 6 444444444444444 00000 6 999999 6 2 6 999999 99 1 3333 11 00000 8 0 6666666666666666 44 3 7 0 33 1 0 0 11 1 99999999 1 6 2 8 0 7777 222 8 11 444 8 0 1 8 666 8 0 6 1 99 6 6 8 1 0 11 44 2 1 3 2 0 1 22 1 0 3 22 1 7 2 11 333 555555555555555555 2222 888 999999999 5 5 5 5 888 77 2222 222222222222 1 1111111 2 6 444444 0 0
lowQualScore : .. . . . . .. ... . . . . . .. ..... . . . . . . . . . . . .... .... .. . . ............. . ... .. .... . . . . ......... .. . . . ............... ..... . ...... . . . ...... .. . .... .. ..... . . ................ .. . . . .. . . . .. . ........ . . . . . .... ... . .. ... . . . . ... . . . . .. . . . . . .. .. . . . . . . .. . . . .. . . . .. ... .................. .... ... ......... . . . . ... .. .... ............ . ....... . . ...... . .
lowQualScore : 77 7 3 7 0 88 888 0 8 8 0 0 55 22222 2 8 0 2 0 0 0 0 0 0 0 0000 0000 22 7 0 9999999999999 7 888 00 0000 8 4 6 7 000000000 77 7 7 0 333333333333333 88888 7 222222 7 5 7 222222 44 4 0000 00 22222 8 7 3333333333333333 00 3 3 0 88 4 8 8 00 0 00000000 0 3 2 0 8 0000 000 0 00 000 0 8 0 8 888 0 8 7 0 22 7 7 0 0 8 00 22 5 0 2 5 0 0 00 0 0 2 22 0 3 5 88 999 999999999999999999 1111 888 111111111 0 0 0 0 888 99 1111 777777777777 0 7777777 5 7 000000 8 6
consensus : NNGTCCGGGAAAAAAA-TCCTAAGCCTGGGTCTGTAGGATATTCCTGGGTAGGTAGANACTCCCTCAGTCTT-CGCCTTTTTCAGCT-GCTGTGCAATGTAAGCCTCCTGTACCTCCTGTCTATCCTCTTCNC-TCAAGAAATCTTNCTGAAGC---CCCGTCTGTTTCTGTAC-CATGTTATTCACTT-TCTTCTGAGCTCTGT-CCACGAATTC-TA-GCT-GTTTC-TGAGCCAT----GTTC---CTCAGGTCA-GGGTCTGAAGTCG-ATGTGAAGAGTGA-GAGC--G---G-----CTCTGCTTTT-ATAGCCCGTAAAA---GNTTTT----TCCTACCGCGCGATCGC-CAGA--------TGTTCAGCATAGGTATT-----------TC--CAGG-TA--T-TC------CAGCGCG-TGCTA-TG------TCTAGACANCTGTCTAGACGCCAGGTGTTCA--T-CACGTGATCTG--CAGGTATTCCAGCGCACTGATTGCACTGATCGCCCTTG-G--TT-T--------TTTTGTGTGTCACTCATATTTTTTAAAAGTAGCCCTAAAAAGGGCTGTTCATGGTTTTT-TTTTTTAAAAATCTCCGGCTTCGTACGCGGGTTCTTCTATATAAAAGTGTAAGT-CA--TGATCAGCGGACGTAATGTCCTCTA--CTANT--------TGTCGAGCTCTTCTCCCCGGGAAACGTATCACNTCGACTG-TTTCCCACAT----CCA---CCT-GCA--TC---AAAA-AACAANCNCCATAC-A-CTTCTTCGGTGACGT-GGTTTCTCCAGCC-GAATAAATCCCGATACTTTTTGAGTGCCGTTCAATAACGTGTAAAACTGGTAAA--TCA-TG-TACTGTA-TGAGGGAATTTTNAAGGTA--CATNTCTCGTAAACCCGNCCAAATATCCTCCGGTGTTTCATGTG-GACGCAATACATANTCAAAACACCAATTTTTAGATCNNTCCCAGCGTAATCNATGGCGACGT-CTCTGTACTAAATTTTCCCAGGTGTACATCTCCTCTACATGNGTGTTCATTTCTTCTTCCACGGTTCTGGTTGTTGACAAATCA-------------A--CTCG---AC---TT---G-T---AT-TCCG-T-GGCGGCGTCTCTCTCTTAAAATTCTC-CGTG---TATCCATGACTGGAGGT--CAG----ACAAGAATG-TG---G-CTATACTNTAGAA-------ACCACCTGACGTGCAGGTGATT-GATCACGTGGTCTAATTGCACTCAATGACCTTTACCTATA
Reference ( family-3778 ) : NNGTCCGGGAAAAAAA-TCCTAAGCCTGGGTCTGTAGGATATTCCTGGGTAGGTAGANACTCCCTCAGTCTT-CGCCTTTTTCAGCT-GCTGTGCAATGTAAGCCTCCTGTACCTCCTGTCTATCCTCTTCNC-TCAAGAAATCTTNCTGAAGC---CCCGTCTGTTTCTGTAC-CATGTTATTCACTT-TCTTCTGAGCTCTGT-CCACGAATTC-TA-GCT-GTTTC-TGAGCCAT----GTT----CTCAGGTCA-GGGTCTGAAGTCG-ATGTGAAGAGTGA-GAGC--G---G-----CTCTGCTTTT-ATAGCCCGTAAAA---GNNTTT----TCCTACCGCGCGATCGC-CAGA--------TGTTCAGCATAGGTATT-----------TC--CAGG-TA--T-TC------CAGCGCG-TGCTA-TG------TCTAGACANCTGTCTAGACGCCAGGTGTTCA--T-CACGTGATCTG--CAGGTATTCCAGCGCACTGATTGCACTGATCGCCCTTG-G--TT-T--------TTTTGTGTGTCACTCATATTTTTTAAAAGTAGCCCTAAAAAGGGCTGTTCATGGTTTTT-TTTTTTAAAAATCTCCGGCTTCGTACGCGGGTTCTTCTATATAAAAGTGTAAGT-CA--TGATCAGCGGACGTAATGTCCTCTA--CTANT--------TGTCGAGCTCTTCTCCCCGGGAAACGTATCACTTTGACTG-TTTCCCACAT----CCA---CCT-GCA--TC---AAAA-AACAANCNCCATAC-A-CTTCTTCGGTGACGT-GGTTTCTCCAGCC-GAATAAATCCCGATACTTTTTGAGTGCCGTTCAATAACGTGTAAAACTGGTAAA--TCA-TG-TACTGTA-TGAGGGAATTTTNAAGGTA--CATNTCTCGTAAACCCGNCCAAATATCCTCCGGTGTTTCATGTG-GACGCAATACATANTCAAAACACCAATTTTTAGATCNNTCCCAGCGTAATCNATGGCGACGT-CTCTGTACTAAATTTTCCCAGGTGTACATCTCCTCTACATGNGTGTTCATTTCTTCTTCCACGGTTCTGGTTGTTGACAAAT---------------A--CTCG---AC---TT---G-T---AT-TCCG-T-GGCGGCGTCTCTCTCTTAAAATTCTC-CGTG---TATCCATGACTGGAGGT--CAG----ACAAGAATG-TG---G-CTATACTNTAGAA-------ACCACCTGACGTGCAGGTGATT-GATCACGTGGTCTAATTGCACTCAATGACCTTTACCTATA
gi|1 : TCCGGGAAAAAAAATCCCAAGCCTGGGTCTGTAGGATATTCCTGAGTAGGTTAAAACTCCTTCAGTCTTGGGCCTTTTTCATCTGGCTGTGT-ATGTAAGCCT-CTGTACCTCCTTTCTATCTTCTTCGCTTCAAGAAATCTTG-TGAA-CATTCCAGTCT-TTTCTGTACGCATGTTATT-ACTTGTCTTCTGAGCTCTGT-CCACGAA-TC-TATGCT-GTTTCTTGAGCCAT----GTTCATACTCAGGTCA--GGTCTGAAGTCGAATGTGAAGAGTGATGAGT--G---GGTGGTCTCTGCTTTTAATAGCCCGTAAAACAGGTTTTT----TCCTGCTG-GC-----T-CAG---------TG-CCA--AT-GGT-TT-----------T------------T-TC------CAGCG-G-TG----TG------TCTAGACACCTGTCTGAACGCCTGGTGTTCA--TGCACGTGATCTGAACAGGT-----AGCGCACTGATTG-ACTGA
gi|10 : cggcctccatggggaggtcaactgagtgcacttttttatgcaaatgaggtcaatgtgattggtcaagccagtttgaccccagcaggggtcaagccgggctagcccggccgggtttagagtcggttttagatggccgggttagaggccggttataggtcggcctagttaagccgctggcctaaggtcaggttttagcattgtgaacgttcatgcggactttggacttggcagagcatatatgacgtttgcactgtttaaaaaatcgatacaatccaaggcataaaatctgacgtcaaaaatgtagcacacttaggaatgtgttatcgatcgcaaaaatcccagtgaatccagtaaatcctggtgtatattaaatcctgtgtattcctgtgcataatagactaaacaccaggtttaagtttacaatgtttattaaagaacaatgccaatgtaaaacatttttaaacagcaataaaaaaacagttcaagtgtttttatctttcgggctcagtttcttttcttctttaggcggttcttcagtgggtgcggggggattccacatctctaaacggtttgtaactctctcttcacgggggtttttgagcagtacgggcccaatcatctcagtgatcttctgcttttcttcaaggacagcactgatccagttgttccttatatccgcgcacttgtaacaaggatcccatttgtttggttttctttctggctggttaattctgccgtttttactggtctgcggataatctgatccgatttcttactggtctgccggaataatctgctttctggggcaaatccggcgaccaatgtcctgattttctctcgcaagtgtaaggacgggttgtcagcgtaattgtgagtgtagtcctttcctagggtttcctagatttttattccgtcacttcttccagcttcttccagcaggactgtgggtagatttccaaactcattactcacacattaattgctggtaacgatcccgtctgagtgtttgtggtaatgatcgcaaaatcttctttggttcatggccggaggctcgttctgtggttggtagaaggcccagttccagtccgttacagtctttgactctggaatCTCTACACGTGTGTTCATTTCTTCTTCCTCGGTTCTGGTTGTTGACAAATCAT------------A--CTCC---AC---TT---G-TTGGAT-TCCG-T-GGCGGCGTCTGTTT--TAAAATTCTC-CGTG---TATCCATGACTGGATGT--CAA----ACAAGAATG-TAC--G-CTATATTATAGAA-------ACCACCTGACGTGCAGATGATT-GATCACGTGGTCTAATTGCACTCAATGACCTTTAgtaggttcctcgtggcctctctggtgcc
gi|13 : TGTAAGTTCAGGTGATCAACTA--GTA-TTTCATTTT--CAAAT--------TATCGAA-TCTT-TCCC--------GTATCGCC---ACTG-TT-CCCACAT----CCAATGTCT-CCAGTCC---AAAC-AAC-AGCACTATAC-----CCCTCGGTTACGGAGGTTTCTTCAATCGGAATGAGTCCCG---------------TGTTCAATAGCGTGTAAAG-TGGCAA----CATTA-TACTG
gi|15 : GAAGTCG-GAATGAAGAATAA-GA-CTTG---G-----CACCGTTTCT-ATAGCCAGCAAGA---ATTCTT----TCCTACCACGTGATCAG-CAGACATTCCAGTGATCAGCGCAGGTGTTATACCACGTGATCTGCAGG-TG--T-TC------CAGCGCG-TGATA-TG------
gi|16 : GTTCTACATGTTGACAAATCAAATCATGTTCATCA--TTTG---AC---TTTT-G-T---AT-TCGC-C-GGCGACGTCTCTGACTCAAAATTCTC-CGTGCTACATCCATGACTCGAGGTACCAGTAATACAAG
gi|17 : tTGTAC-CATTCCGTTGACTT-TCTTTTGAACTCTGTCCCACAAAATCTTT-GCCGGTTTC-TGTGGCACAATAGTTC---CTCTGCTCACGTGTGTGATATAG-ACGTG-CGAGTG
gi|19 : CC-GAATGAATCCCGATACTTTTTGAGTGCCGTTCAATAACGTGTAAAACTGGTAAA--CCA-TG-TACTGTA-TGAGGGAATTTTGAATGTA--CAT
gi|2 : cattgtttactcttGTCCGGGAAAAAAA-TCCTAAGCCTGGGTCTGTC--ATATTC-TGGGTAGGTAGATACTCC-TCAGTCTT-CGCCTTTTTCAGCT-GATGTGCAATGTAAGCCTCCTGTACCTCTTGTCTGTCCTCTTCTT-TCAAGACATCTTTCTGAAGC---CCTGTCTGTTTCTGTAT-CATGTTATCCACTT-TCTTCTGAGCCCTGT-CCACGAATTA-TA-GCT-GTTTC-TGAGCCAT----GTT----CTCAGGTCA-AGGTCTGAAGTCG-ATGTGAAAAGTGA-AAGC--G---GGGA--CTCTGCTTTT-ATAGCCCTTAAAA---GGGTTTATTTTCCTATCACGCGATCGC-CAGA--------TGTTCAGCATAGGCATT-----------TC--CAGGCTA--TGTCTAGACACAGCGCG-TGCTA-TG------TCTAGAC------------GCCAGGTGTTCAGCC-CAGGT-ATTTA--CAGGTATTCCAGCGC
gi|2 : ggaaCGC-CAGG--------TGTTCAGCCCAGGTATT-----------TA--CAGG-TA--T-TC------CAGCGCG-TGCTG-TG------TCTAGACAGGTGTCTAAACGCCAGGTATTCA--T-CACGTGATCTG--GAGGTATTCTAGTGCACTGATTGCACAGATTGCCCTTG-GGGTT-T--------TTTTGTGTGTCACTCATATTTTTTAAAAGTAGCCCTAAAAAGGGCTGTTAATG-TTTTT-TTTTTTAAA--TCCCCGGCTTCGTACGCGGGTTATTCTATATAAAAGTGTAAGT-CA--TGATCAGCGGACGTAATGTCCTCTATACTATT--------TGTCGAGCTCTTCTTCCCCGGAAACGTATCACATCGACTG-TTTCCCATATTGAGCGA---CCT-GCA--TC---AAAA-AACAATCCCCATAC-A-TTTCTTAGGTGACGT-GGTTTCTCCAGCC-GAATAAATCTCGATACTTTTTGAGTGCTGTTCAATAACGTGTAAAACTGCAGAA--TCA-TG-TACTGTA-TGTAGGAATTTTGAAGGTA--TATCTCGCTTAAACCCGGCCAAATATCCTCCTGTGTTTCATGTG-GACGCAATACATTTTCAAAATACCAATTTTTAGATCTTTCCCAGCGTAATCTGTGGCGATGT-CTCTATACTAAATTTTCTCAGATGTAGATCTTCTCTACATAGGTGTTCATTTCTTCTTCCACGATTCTGGTGGTTGACAAAT---------------A--CTCA---ACTTGTT---G-T---AT-TCCG-T-GGCGGCGTCTCGCTCTTAAAATTCTC-CGTG---TATCCATGACTGGAGGT--CAG----ACCAGAATG-TG---A-----ATTCTAGAA-------ACCACCTGAAGTGCAGGTGATT-GATCACGTGG------TGCACTCCATGACgtgctgtgtctagacaggtgtctaaacgccaggtattcatcacgtgatctggaggtattctagtgcactgattgcacagattgcccttggggtttttttgtgtgtcactcatattttttaaaagtagccctaaaaagggctgttaatgtttttttttttaaatccccggcttcgtacgcgggttattctatataaaagtgtaagtcatgatcagcggacgtaatgtcctctatactatttgtcgagctcttcttccccggaaacgtatcacatcgactgtttcccatattgagcgacctgcatcaaaaaacaatccccatacatttcttaggtgacgtggtttctccagccgaataaatctcgatactttttgagtgctgttcaataacgtgtaaaactgcagaatcatgtactgtatgtaggaattttgaaggtatatctcgcttaaacccggccaaatatcctcctgtgtttcatgtggacgcaatacattttcaaaataccaatttttagatctttcccagcgtaatctgtggcgatgtctctatactaaattttctcagatgtagatcttctctacataggtgttcatttcttcttccacgattctggtggttgacaaatactcaacttgttgtattccgtggcggcgtctcgctcttaaaattctccgtgtatccatgactggaggtcagaccagaatgtgaattctagaaaccacctgaagtgcaggtgattgatcacgtggtgcactccatgacaggtgttttctgaacgttcatc
gi|20 : ggaagtccgggaaaaaaatcctaagcctgggtctgtcatattctgggtaggtagatactcctcagtcttcgcctttttcagctgatgtgcaatgtaagcctcctgtacctcttgtctgtcctcttctttcaagacatctttctgaagccctgtctgtttctgtatcatgttatccactttcttctgagccctgtccacgaattatagctgtttctgagccatgttctcaggtcaaggtctgaagtcgatgtgaaaagtgaaagcggggactctgcttttatagcccttaaaagggtttattttcctatcacgcgatcgccagatgttcagcataggcatttccaggctatgtctagacacagcgcgtgctatgtctagaCTTAAAAGTCTCGCGTG---TATCCATG-CTG-AGTT--AAG----CCAAGCA------------ATACTGTAGAA---------CGC-TGACGTACAGGTGATTGGATCGTGTGaggtgttttctgaacgttcatc
gi|21 : tcactaTTCTGCCTGTTAACAAATCATATCC--------ATCCTCGGTCAG---TT---G-T----T-TTTGCT-GGCGATTTCTTTGTCTCGAGATTATC-CGTG---CATCCATGAATCGAGGccaggtggtgtttt
gi|22 : cATCTGCGGACGTAATGTCCTCTA--CTACTATAGTATTTGTCGACTTCTTCTCCCTGGGAAACGTATCACTTTGAC
gi|23 : --G---G-----CTCTGCTTTT-ATAGCCCGTAAAA---
gi|3 : GTCCGGGGAAAAA--TCCTAAGCCTGGGTTTGTAGGAT---TCTGGGTAGGTAGATACACTC-CAGTCTT-TGCCTTTTTCAGCT-GCTGTGCAATGTAAGCCTGCTGTACATTCTGTCTATCTTCTTCAC-TCAAGAAATCTTTCTGAAGC---CCCGTCTGTTTCTGTAC-TATACTATCTACTT-TCTTCTGAGCCCTGT-CCACGAATTC-TA-GCT-GTTTC-TGAGCCAT----GTT----CTCAGGTCA-GGGTCTGAAGTCG-GTGTGAAGAGTGA-GAG--------------------------AGCCCGTAAAA---GAATTT----TCCTATCACGCGATCGC-CAGA--------TGTTCAGCATAGGTATT-----------TC--TAGG-TA--T-TC------CAGCGCG-TGCTA-TG------TCTAGACAGCTGTCTAGACGCCAGGTGTTAA--T-CACGTGATCTG--GAGGTATTCCAGTGCACTGATTGCACTGATTGCCCTTG-G--TT-T--------TTTTGTGTGTCACTCATATTTTTTAAAAGTAGCCCTAAAAAGGGCTGTTCATGGTTTTTATTTTTTAAAAATCTCCGGCTTCGTACGCGGGTTCTTCTATATAAAAGTGTAAGT-CA--TGATCAGCCGACGTAATTTCCTCTA--CTATT--------TGTCGAGCTCTTCTCCCTGGGAAACGTATCACATCGACTG-TTTCCCACAG----CCA---CTTTGCA--TC---AAAA-AACAATCCCCATAC-A-CTTCTTAGGTGACGT-GGTTTCTCCAGCC-GAAGAAATCCCGATACTTTTTGAGTGCCGTTCAGTAACGTATACAACTGGTGAA--CCA-TG-TACTGTA-TGAGGGAATATTTAAGGTA--CATCTCTCGTAAACCCGTCCAAATATCCTCCTGTGTTTCATGTG-GACGCAATACATATTCAAAACACCAATTTTTAGATCTTTCCCAGTGTAATCTATGGCGACGT-CTCTGTACTAAATTTTCCCAGATGTATATATCCTCTACATGGGTGTTCATTTCTTCTTCTACGGTTCTGGTGGGTGACAAAT---------------A--CTCA---AC---TT---G-T---AT-TCCG-T-GGCGACGTCTCTCTCTTAAAATTCTC-CGTG---TATCCATGACTGGAGGT--CAG----ACAAGAATG------------ACTGTAGAA-------ACAACCTGACGTGCAGGTGATT-GATCATGTGG------TGCACTCAATGACCTCTACCTATAcaggt
gi|5 : atAGACTCTCTGGGCCT----CCTTTTTCAGCT-GCTGTGCTATGTAAGCCTCTTGTACCTCCTGTTTATCCTCTTCTC-TCAAGAAATCTTGTTGAATT---CCTGTCTTTTTCTGTAC-CATGTTATTCACTT-TCTTCTGAGCTCTGT-CCACGAATTC-TA-GCT-GTTTC-TGAGCCAT----GTT----CTCAGGTCA-GGGTGTGAAGTCG-ATGTGAAGTGTGA-GAGT--GTGGG-----CTCTGCTTTT-ATAGCCCGTAAAACA-GGTTTT----TCC-AGCGCCTGCTGGCTCAG---------TGC-CA--ATGGGTTTT-----------TC--CCAG-TGCCT-GC------TGGCTCGATGCCAATGGGTTTTTCCAGCGCTCTGTCTAGACGCCAGGTGTTCA--T-CACGTGATCTG--CAGGTA-----GTGCACTGATTAACCTTAACGAACTTGTG--TTATGCCAGGGATTTTGTGTGTCACTCATATTTGTTTAAAGTAGCCCTAAAAAGGGCTGTGCATGG-TTTT-TTATTTAAAAATATCCGGCTTCATACGCGGGCTCTTCTATTTACATGTATAAGT-CA--TGATCTTCGGACGTAATGTCCTGTA--CTAGA--------TGTCGAGCTCTTCTCCCTGGGAAAGGTATCACTTTGACTG-TTTCCCACAT----CCAG--CCT-GCA--TC---CCAA-AACAACAGCCATAC-A-CTTCTCCGGTGACGT-GGTTTCTCCAGTC-GAATAAATCCTGATACTTTTTGAGTGCCGTTCAATAACGTGTAAAACTGGTAAA--TCA-TG-TACTGTA-TCAGGGACTTTTTAAGGTA--CATGTCTCGTAAACCCGTCCAAATATCCTCTGGTGTTTCATGTG-GACGCAATACATAGTCAAAACACAAATTTTTAGATCGGTCCCAGCGTAATCGATGGTGACAT-CTCTGTACTAAATTTGCCCAAGTGTACATCTCCTCTACATAAA------------CTTCTACGA---TG---GTTGATAAAT---------------A--TTTT---AC---TTGCGG-T---AT-TCCG-T-G
gi|7 : aTCGAGCTCTTCTCCCCGGGAGACGTGTCACTTTGACGGATTTCCCACAT----CCA---CCT-GCA--TCCCCAAAACAACAAAC--CATACCATCTTCTTCG-TGACGT-GGTTTC--CAGC--GAATAAATCCTGATACTTTTTGAGTGCCGTTCAATAACGT-TAAAACTGGTAAAATTCG-TGATACTGTACTCAGGGAATTTTCA-GGTAGCCATG-CTCGTAAACC--GCCAA-TATCCTCTGGTGTTTCATGTGTGACGCAATACATAGTCAAAACACCAATTTTTAGATCGGCTCCAGCGTAATCGATGGCGACATACTCTGTATTAAA-TTTCCCAGGTGT-TACCATCTCTACATAAA------------CTTCTACG---CTG---GTTGATAATT---------------C--CTCC---AC---TT---GTT---GTATCCG-TGGGCGGTGTC-CGCTCTTAAAAGTCTC-CGTG---TATCCATGACTGGAGGT--CAT----ACAAGAATGATGCCAG-CTA-ACGCTACAAGTGGTTGATCACGTGATGCACAGGTGCTT-GATCACGTGATGCGATTAC---------CTTTTACCTATA
gi|9 : CCCAGGTGTACATCTCCTCTACATGTGTGTTAATTTCTTCTTTCTCGGTTCTGGTTGTTGACAAATCAT------------A--CTCG---AC---TT---G-TTGTAT-TCTG-T-GGCGACGTCTCTCTCTTATAATTCTC-CGTG---TATCCACGACTTGAGGT--CAG----ACAAGAATG-TG---GGCTATATTCTAGAA-------ACCACCTGCTGTGCAAGTGATT-GATCATGTGGTCTAATTGCACTCAATGACCTTTACCTATAaatacagggttttctgaaacgttcatg
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): AAAAGACGATTACATAATCACAAGCCTATTATCAATAAATTGGATCGTCAAAAGGCGTACCGCGCAACGAACTTAGGAGTTAGTGGGATCGCACCTAAAATCAAATAGCAGTAAATATCCTGTGTAATCAATAAAAGAATAACACAAAATATAGTTTAACATGTTATTAAAGCAAAAAAAAGAACAATAAACTAAAATGAGTAATAAACAGTAAAAAAAACTAATAGATCAAGTTTCTGGATTACTAGTTCGGTTCTAGATAACTTCTTCTCTTTTTTAGCAGGTGGGATTCATTTCAGTAAGCATGTGCGGAGAGGATTCACAATACCTTTTCTCAAAAATTATTCTTTTATAACTCTCTCATTACAGCCAAAAGGTTTTGACCAAGGTACGGGCCCAATCATTTCACTCAGAATCTCCGTCTAGTTCTTAGCGGACATCACTGCACAATTACCCCGCTTGTCCTGCTAATTTCAATCCTAGGGGCAGCGGGGGTGCTAGCACACGAATCCCTTTGTATGGATTTTCTTCTGCATGGTCTACGAGGCACAGAGATTGCCTAGGAAAAACTAACATTTGCGCTCGTGCGAGATAATCTTCATACCCCGAAAAGTTCTTGCGCGATTAATGGCCTCGCAATTTAATGATCGGGGCAATCCGGCGACCAATGGACATCCTTTGTTGAATCCCCCCGCAAGTAGAATAAGGCTCCGTGGTTGCTAGACGTTCACCTGATTAATTTTTAAGAAGAGATGTTGTTATATTCCCTTCACTAGAGGGATTGATTGAAGCTAGAATGTAAAATCTTTTTTCTCTTCTCGCTCTTTCATCAGTCTTCTGATCAGAACAGTACACTGTGGTAATCGATTATACAATCTCATCTTGACTCATTACACCCTATTATGAGCGGAGATTAAACAATCCAACCGTGCTAGTGTCCTGTGTAATGTAAGTACAGCATAAAGTCTTCTATTTGTTTCATGGTACTGAAGGTT
Unaligned ( gi|6 ): TCAACTGACCGCGACTATTTTCATGCACACATGAGGCACCCATGTGTCAGCAGTTGACGCCCACAGTCTTGAAGTCGCCGCTAGCGCCGGCCAGCCCAGCCCCGCGATTTAGAGCCCCGGCGTTTATAGCCCGGTGAGCCCGGGCCGGTTTATAGCATGCTTGTTTTAAGCCCGTGAGCCCGCCGGGGTCGGTTTATAATGGTCCCGTCCGATTTACTGCCGTTACTTTTCGTCTTTGAGTTCGCGCCCGGAAAAGAGCTTATAATCTCTGAGAAGAAGATCAGACTTGAAGGAACATATACCAACTGACCTCCAAGAAAGATATCACACTTAGGCAATGTTTATCGATCGCAGAAAATCCAGTGAAATCCCAGTGTTACTCCCTCAACATGTGAAATTACGCTATCGATCGCATATATAACTCCTTTTGTATTTAAAATCCTGTGTCCCTCCTAACAGCATAATAAAAACTAACACCAGTTTAATTTACATGGATCTAATAAGCAAGCAACAACATCATAAACACGTTTTAAACAGCATAAAAATGCAGTTCAGGTTTACAATGTAAAACAGCCTTCAGCATAAAAAACAGTTCAAGTTTTTTTTACTTGCTCTAGCTCAGTAAGCATCCTATGTCTAAATAGGCGCCGACGTAGTCGAAATAATCCCATCCTACGCGATTTACTCTCTCTCACAGCAGTGTTGATCATGTGAGACAGTAACGGGCCCAAAATCATCTATCGGCATCTCCGGCTACGTTCTTGCGGACAAGTCACTGATCCAGTGTCCTTAAATTTCCCGCATGTGTGACAGATCCCTTTGTTTGGTTATTCTTCTGCTGGATGCCTTCTTACTGGTCTTCTAGTCATTACGGTCTGCGCGATAATCATGCTTTCTGGGGGCCATCCGGCGAGCAACAAATGTCCTGTTTC
Unaligned ( gi|8 ): AAGACAATGCCAGTAGTATAAGGCGCCTCCATAGCCGGTCCAACTGAGTGCACTTTTTATGCAAATGAGGTCAATGCTGATTGGTCAAGCAGTTTGACCCCAACAGGGGTCCTAGCCCTGGTTTAGAGTCCGGTTTATAGCACGGCCTGGGTTTATAGCCAGGCCGGGTCTAGAGCCCGGTTTATAGCATGACCGGGATTAGAGGGGTGTTTATAGGTCGACCTAGTTAAGCCGCTGGCCTAGAGTGCAGGTTTTAGCATTATGACGTCATGCGGTTTTGGAGAGCATTATGACGTCACAATGTAGCACACTTAGGAATGTGTTATCGATCGCATAAAATCCAGTGAAATCCGGTGTATTCCTGTGTATTAGATCCTGTGTATTCCTGTCCATAATAAAGACTAACACCAGGTTTAAGTT
Unaligned ( gi|11 ): ACGGCCTCATGGCTGGTTCAACTGAGGTGCACTTTTTAGGCAAATGAGGTCAATGCTGATTGGTCAGCAGTTTGACCCCAGCAGGGGTCGCCGGGCTAGCCCGGCCAGGCCCGGCCGGTCTAGAGCCCGGTGAGCCCGGCCGGGTTTAGAGCCGGTCGGGTTTATAGCCGCGTGAGCCCGGCCGGGTTTATAGCACGGC
Unaligned ( gi|12 ): ATAACGGGCCTCGATGGCTGGTACAACTGAGTGCACTTTTTATGCAAATGAGGTAAAGCAGGGAGGCTTCTGATTGGTCTTGAAAGCGGTGTCGGGCCTCCATGGCCGGTTCAATATCTAGGACGGAGTCAAGCAGTTTGACCTCAGCAGGAGTCGTCGGGCGCGGGATAGCCCGGTTTATAGCGCGGCCGGGTTTAG
Unaligned ( gi|14 ): ACGGCCTACATGGCTGGTTCAACTGAGTGAACTTTTTAGGCAAATGAGGTCAATGCTGATGGTAGCAGTTTGACCCCGCAGGGGTCGCCCGGCTAGCCCGGCAGCCGGCCGGTCTAGAGCCCGGTGAGCCGGCCGGGTTTAGAGCCCGGTCGGGTTTTATAGCCCGGTGAGCCCGGCCGGGTT
Unaligned ( gi|18 ): AAGGAGCATTTTCATTCATTTATGCAAATGAGTATCACAATACCGTGTGTCAACGCAGTTTGAGGACCCCGCAGGGGACGCCGGGCTAGCACGGCAACCCCAGCCGG