lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 1 1 1 1 22 22 333333 22 111 222 1 1 222222 111 44444444444444 11111111111 3333333333 222222 22 111111111 11 222222 1 1 111111 11111111 33 11111 333 111 3 11111111 11 11111 111111 1 11 1 1 1111111 1 11111 22222222222222222222222 11111 222222222 222222222 22222 11111 111111 2222 2222 11111 11111111 222222 1111 1111111111111111111111111111111111111111111111111111111111111111111111111111 1111 1111111 22222 11 1111 111111 44444444444444444444444444444 111111 11111111 22222 11 5555555555555555555 4444 11 2 11 1 1 444444 4 4
lowQualScore : 5 6 4 4 777 4 4 4 0 3 3 0 555 0 5 0 5 5 7 5 1 7 99 5 44 5 3 444444 5 5 11 77 000 5 777 66 333 0 0 5 5 4 444444 333 4 0 66 00000000000000 9999 4 777 88888888888 99 1111111111 8 4 222222 4 4 0 44 555555555 22 4 111111 9 0 2 7 444444 5 5 5 5 66 77 77 22222222 4 5 5 66 5 5 0 5 44444 77 444 000 5 5 0 6 77 5 33333333 22 66 3 66 2 44444 4 111111 66 7 66 00 66 8 7 4 4 4 4 4 5 5 4 4 3333333 8 4 55 2 55 8888 777 0 7 00000 66666 44444444444444444444444 44444 4 5 4 55 444444444 555555555 6 8 8 3 1 3 88888 22222 888888 5 5 0000 5 77 7777 33333 44444444 111111 3 4444 2 4444444444444444444444444444444444444444444444444444444444444444444444444444 7777 3 4444444 77777 55 6 6 5 6 6666 6 6 000000 66666666666666666666666666666 6 777777 99 66666666 0 5 0 00000 11 5 5 8 1 1111111111111111111 4444 77 77777 4 44 3 11 3 3 222222 4 3 0 2 0 3 2
lowQualScore : . . . . ... . . . . . . . ... . . . . . . . . . .. . .. . . ...... . . .. .. ... . ... .. ... . . . . . ...... ... . . .. .............. .... . ... ........... .. .......... . . ...... . . . .. ......... .. . ...... . . . . ...... . . . . .. .. .. ........ . . . .. . . . . ..... .. ... ... . . . . .. . ........ .. .. . .. . ..... . ...... .. . .. .. .. . . . . . . . . . . . ....... . . .. . .. .... ... . . ..... ..... ....................... ..... . . . .. ......... ......... . . . . . . ..... ..... ...... . . .... . .. .... ..... ........ ...... . .... . ............................................................................ .... . ....... ..... .. . . . . .... . . ...... ............................. . ...... .. ........ . . . ..... .. . . . . ................... .... .. ..... . .. . .. . . ...... . . . . . . .
lowQualScore : 7 0 4 4 888 4 4 4 1 2 2 0 666 0 0 0 7 7 0 7 4 1 66 0 99 0 4 666666 0 0 66 99 000 0 888 11 888 0 0 0 0 4 444444 999 4 1 11 22222222222222 5555 0 888 44444444444 99 2222222222 9 4 666666 4 4 8 33 333333333 44 4 111111 0 0 0 4 222222 0 0 0 0 99 99 99 77777777 3 7 7 44 7 7 7 7 33333 99 444 000 7 7 4 4 99 7 11111111 33 99 1 99 2 88888 4 666666 11 8 11 66 11 2 3 4 4 4 4 4 8 7 0 0 7777777 0 0 55 8 55 5555 000 7 9 00000 22222 77777777777777777777777 00000 0 3 0 44 000000000 111111111 2 0 0 6 2 6 66666 55555 999999 0 0 6666 7 99 9999 77777 44444444 000000 2 2222 8 2222222222222222222222222222222222222222222222222222222222222222222222222222 7777 5 3333333 88888 88 0 7 7 7 8888 7 7 333333 22222222222222222222222222222 7 777777 22 55555555 2 0 7 00000 11 7 7 0 4 0000000000000000000 7777 33 77777 7 00 7 33 3 3 000000 0 0 0 5 0 0 5
consensus : NGATCGGAC-AGAAATTGATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTCTCCTTCAATTCTTCCT-GG---G-T-GAA-TTC-AGG-TAAAGATGGC-AGAA-TTTTCTGT-GGAAGCTTTTTGT-ATTGATTCTACATTA-GGCA----TAA-CA-CTGGAATACTT--TTG---ACA-TGTCATTAGAG---T--CC---AA-GC-A-ACA-TCCAT-TGAA---TTG---ATTTCA-TCG--TT-----GATATC---AGA--GAT-TTTCTT---GT-------TC--ACTTC-NTCCA-A---T-G--T-TTCT-G----T-A-G-AGTGT-GTA------A--CTG-TGT-GG--T--TTTTCATCT-CCTCCGCTTTCAGCCTTC-A---GTTT-C-TGG-ACG-AG--T--TT--GT--C--GA-TTTCTCTGTGCCAGTCCTCTCC-A-TGTTTTG-TT-AT-GGCTGTT-GA-----GAG--ATCTCC-ACAT---TTCTTTTCT-A-ACTG-ACTCATT--CTG-TTT---T----GTA-CATCAGATA--CAATGT--CCTGG-T---AG-G--C---TGG--ATAA--A--T--TGTTTTC-A-TTT-AA-C-TCA-TTTTTCTCTTT-G-G-----CGA-TCTT-TT--CTTTCTTT--T----C---CTCCAAGACTTTGC-----A-TT--A----TATTT--CGAT-----A-NTTCA-----TGA-CCTAAATG-TTGAT-CTGG-AN-GCNACACA---AGG--AACG-C-AGA-CCGGA-ATAT--G-ACACTGATT--ACAGTACATT-TT-CAC-ATCGTTCTTTGTCATGAGA-G----TA-CA--TCC--G-GGGT-A---GAG-----G--GGGGTGGATTTTCTG----TCCTGGATG-CGNACGAAT--TTNT--TGCG--GCTTT-G---------A-G---GGTCGGCTGAGA-A-G------------TGT---TCTCCCACGCAGGCCTTA-C-A---CAGG--T-GACGAGG--CACGTAT-CGCAGTACATC-TGTACC-ACGG-C-GGT-CTTACA-CAGGTCACA--T-C-GCA---TCA--C---GT--CCTGGG---CA--CT-GG--T--ACG--GGGGTCCATCATC--G-GTCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAATAGC-AATGTTGGAA-------GTC-ATTCA---TGCATGATTC----ATAGTAGCCGCATGTAGAAATGTATCTCTCTANCTATAAAA-CA-TTGAGATAAAG-AGC-TGCTTAAAGAGATATGTCNTCAACGT-AGAGANAGCAT-ANAAAATAAACNATT
Reference ( gi|1 ) : TGATCGGAC-AGAAGTTGATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTCTCCTTCAATTCTTCCT-GG---G-T-GAA-TTC-AGG-TAAAGATGGC-AGAA-TTT-CTGTTGGAAGCTTTTTGT-ATTGATTCTACATTA-GACA----C-A-CA-CTGGAATACTT--TTG---ACA-TGTCATTAGAG---T--CC---AA-GC-A-ACA-TCCAT-TCGA---TTG---ATTTCA-TCG--TTA----GATA-C---AGA--GAT-TTTCTT---GT-------TC--ACTTC-TTCCA-A---T-T--T-TTCT-G----C-A-G-AGTGTTGTA------A--CTG-CGT-GT--T--TTTTCATCT-CCTCCACTTTCAGCTTTT-A---GTTT-C-TGG-ACG-AG--T--TT--GT--C--AA-TTTCTCTGTGCCAGTCCTCTCC-A-TGTTTT--TT-AT-GGCTGTT-GA-----GAG--ATCTCC-A-AT---TTCTTTTCT-A-ACTGCACTCATT--CTG-TTT---T----GTA-CATCAGATA--CAATGT--CCTGG-T---AG-G--T---TGG--AT-A--A--T--TGTTTTC-A-TTT-AA-C-TCATTTTTTCTCTTT-G-G-----CGA-TCTT-TT--CTTTCCTT--T----C---CTCCAAGACTTTGC-----A-TT--A----TATTT--CAAT-----A-TTTTA-----TGA-CCTAGATG-TTGAT-CTGA-AA-GCAACACA---AGG--AATG-C-AGA-CCGGA-ATA---G-ACACTGACT--ACAGTACA-T-T--CAC-ATCGTTCTTTGTCATGAGA-G----TA-CA--TCC--A-GGGT-A---GAG-----G--GGATTGAGTTTTCTG----TCTTGGATG-CGTACAAAT--TTGT--TGCT--GCTTT-G---------ACG--CGGCCAGCTGAGA-A-A------------TGC---TCTCCCATGCAGGCCTTA-C-A---CAGG--T-GACGAGG--CACGTAT-CACAGTACATC-TGTACC-ACGG-C-GGT-CTTACA-CAGGTCACA--T-C-GCAT--TCA--C---GT--CT--GG---CA--CT-GG--T--ACG--GGGGTCCATCATC--G-ATCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAATAGC-AATGTTGGAA-------ATC-ATTCAGCATGCATGATTCATATATAGTAGCCGCATGTAAAAATGTATCTCTCTAACTATAAAG-CATTTGAAATAAAG-AGC-TGCTTAAAGAGATATGTCATCAAAGTAAGAGAGAACATAAAAAAATAAATCATT
gi|2 : GATCGGACCAGAAATTGATGATAAAAATTCGCAAA---CCAGTTCTG-CATAGTTCTTCTCCTTCA-TTCTTCCT-GG---GGT-GAA-TTC-AGGGTAAAGA-GGC-AGAA-TTTTCTGT-GGAAGCTTTTTGT-ATTGAT-CTAC-TTA-GGCAATAAC-A--A-CTG-AATACTT--TCG---ACA-TGT-ATTCGAG---T--CA---AA-GT-A-ACA-TCCATATGAA---TTG---ATTTCA-T-G--TT-----GATATC---AGA--GAT-TTTCTT---GT-------TTG-ACTTC-ATCCAGA---T-G--T-TTCT-G----T-A-G-AGTGT-GTA------ATTCTG-TGT-GG--T--TTTTCAT-T-CCTCCACTTCAAGCCTTC-A---ATTT-C-TGG-ACG-AG--T--TT--GT--C--AAATTTCTCTGTGCCAGTCCTCTCC-A-TGTTTTG-TTAAT-GGCT-TT-GA-----GAG--ATCTCC-ACAT---TTC-TTTCT-A-ACTG-ACTCATT--CTG-TTT---T----GTA-CATCAGATA--CAATGT--CCTGG-T---A--G--T---TGG--ATAA--A--T--TG-TTTC-G-TTTAAA-C-TCA-TTTTTCTCTTT-G-A-----CAATTCCT-TT--CCTTTTTT--T----C---CTCGAAGAC-TTGCCCCAAA-TTTAA----T-TTT--TGAT-----A-ATTCA-----TGG-ACTAAATGTTTTAT-TTGG-AT-GACACACA---ATGTTCACG-CAAGACCCGGA-ATATATG-ACACTGATT--ACAGTACATT-T--CACAATCGTTCTTTGTCATGAGAGG----TA-CA--CCC----GGGTAA---GAG-----G--GGGGTGGAATTTCTG----TCCTTGAT---GTCCCAATGATTTT--TG-TGAGCTTT-G---------A-A--AGATCGGCTGAAA-A-G------------TGT---TCTCCCACGCAGGCCTTA-C-A---CAGGT-T-GACGAGGC-CACGTAT-CGCAGTACATC-TGTA-C-ACGG-A-GGT-CTT-CAGCAGTTCACA--T-C-GCAA--TCA--C---GT--CCTGGG---CAACCT-GG--TAAACG--GGGGTCCATCATCA-G-ATCTCGCTGGTGGCCCCTGAATAAATTATGA-AT-AAATAGC-ATTGTTGGAATATAACTGTCAATTC----TACATGATTC----ATAGTAGCTGCATGTAGAAATGTATCTCTCAAGCTGTAAAACCATTTG--ATAAAGAAGCTTGCTTA
gi|6 : TCGGAC-AGAAATTGATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTTTTCTTCAATTCTTCC--GGAA-G-T-GAA-TTC-AGG-TAAAGATGGC-ATAATTTT-CTG-TGGAAGCTTTTTGT-ATTGA-TCTACATTA-GGCA----TAA-CA-CT-GAATACTT--TTG---ACA-TGTCATTAGCG---T--CCA--AA-GC-A-ACA-TCCCT-TGAA---TTG---ATTTCA-TCG--TT-----GATATC---AGA--TAC-TTTCTT---G--------TC--ACTTC-ATCCAGA---TGT--T-TTCT-GT---T-A-G-AGTG-TGTA------A--CTG-TGT-G---G--TTTTCATCT-CCTCCAC-TTCATCCTTC-A---ATTT-C-TTG-ACG-AG--T--TT--GT--TCAAA-TTTCTCTGTGCCAGTCCTCTCC-A-TGTTTTG-TT-AT-GGCTGTT-GA-----GAG--ATCTCC-ACAT---ATCTTTTCT-A-ACTG-ACTCATT--CTATTTT---T----GTA--ATCAGACA--CA--GT--CCTGGTT---AG-G--C---TGG--ATAA--A--T--TG-TTTC-A-TTT-AA-C-TCA-TTCTTCTCTTT-G-G-----TAA-TCTT-TT--CTTTCTTA--T----C---CTCCAAAAC-TTGC-----A-TT--A----T-TTT--CAAT-----A-TTTTA-----TGA-CCTAAATG-TTGAT-CTG--AA-GCAACACA---AGG--AACG-C-AGA-CTGGA-ATCT--G-ACACTGATT--ACAGTACA-TCT--CAC-ATCGCTCTTTATCATGAGA-G----
gi|20 : TCCGAC-AGAAATTGATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTCTCCTTCAATTTTTTCTGGG---G-T-GAA-
gi|22 : TCGGGC-AGAAATTGCTGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTC
gi|15 : GGAC-AGAAATTGATGAAAAAG-TGC-TAAA---C-AGTT-TA-CAAAGTTTTTCTCCTTCGATTCTTCCT-GG---G-TTGAA-TTC-TGG-TAAAGATGGC-AGAA-TTTTCTGT-GGAAGCTGTTTGT-ATTGAT-CTACATTA-GGCA----T-A-AAGCTG-AATACTT--TTG---ACA-TGTCATTAGAG---T--C
gi|7 : AC-AGACATTGATGATAAAG-TCC-CAAA---C-AGTT-TA-CACAGTTCCTTGCCATGAATTCTTCCT-GG---GGT-GAAATTT-TGA--AAATAGGGC-AGAA-TTTTCTGT-GGAAGCTTTTTGT-ATTGAT-CTACATTA-GACA----T-AACA-CTG-AATACCT--TTG---ACA-TTTCATTAGAG---T--CC---AAAGC-A-ACA-TCCAT-CAAA---TTG---ATTT---------------GAT--C---AGA--GAT-TTTCTT---GT-------TG--GCTTC-ATCCA-AA--T-G--T-TTCT-G----T-A-G-AGTGT-GTA------A--CTG-TGT-GG--T--TTT-CATCT-CCTCCGCTT-CAGCTTTC-A---GTTT-C-TGG-ACG-AC--T--TT--CT--C--GA-TTTCTCGGTGCCAGTCCTCTCC-A-TGTTTTG-TT-AT-GGCTGTT-AA-----GAG--ATATGC-ATGT---TTCTTTTCT-A-ATTG-ACTCATT--CTG-TTT---T----GCA-CATCAGATA--CAATGT--CTTGG-T---AG-G--T---TGG--ATAA--A--T--TG-TTTC-A-TTT-AA-C-TC-TTTTTTCTCTCT-T-G-----CTA-TCTT-TT--CTTTCTTT--T----C---CTCCAAGAC-TTGC-----A-TT--G----T-TTT--TGAT-----A-ATTCA-----TGC-CCTAAATG-TTGAT-TT-A-AT-GTCAGGCA---AGT---ATGAC-AGA-CCGGA-ATAT--G-ACACT
gi|3 : ttcaAC-AGAAATTGAT-ATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTT-TTCTCTTTCA--TC-TCCT-GG---G-T-GAA-ATCGAGG-TAAAGACTGCAAAAA-TTT-CTGTGGCAAGA-TTTTGT-ATTGA-TCTACATTAGGGCA----TAA-CA-CTGAATTACTTAATTACCTACGCTG-CACAACTG---T--CCAAAAA-GC-A-ACA-TCCAT-T-GAAATTTGTCCGTCTCAGTCGTCTTGCAGTGATG-CGCTAGATCG-T-TTTCAT---ATAGAGAACTCCAACTTT-TT--G-A---G-TAGT-TTCT-G----T-A-GCAGTGCTGTA------A--CTG-TGTGGT--T--TTTTCATCT-CCCTCTCTCTAGGCATAT-ATACGCTT-C-TGG-ACG-AG--tat
gi|12 : GATGATAAAG-TTC-CAAA---C-AATT-TA-CATAGTTCTTCTCCAACAATTCTTCCTGGG---G-T-GAA-TTG-AGG-TAAAGATGGC-AGCATTTT-CTG-TGGAAGCTTTTTGT-ATTGA-TCTACATTA-GACA----TAA-CA-CT-GAATACTT--TTG---ACA-TGTCCTTAGAG---T--CCA--AA-GC-A-AAA-TCTAT-AGAA---TTG---ATTTCA-TTG--TT-----GATATC---GGA--AAT-TTTCatatctagtattcttctggcggtaccccatcctcgctcggtttggtctctcggtggtaagtttgcactatagatcatgatgtttgatcttaattcctgtgtacgacctttgactcgatatatatatatctcgctctagcaactcagatacaatgtctggtcttactgtacctggatacaattgtttcatttaactcatttttctctttggaaaaacgatcttttttcttcttttctcaggacttgcaattatattcaattaatttatgacctaaatgttgatctgatgccagacaaggatgcaaaaccggatatgacactgtacagtacatttcaatcgtttcttgtcatgagaggacatttctcgggtaaagtgggtggggtcgattttcgaaacctttggaatttcatgttcttggattcgtcagaaaacggtacacttgtgttctcccacgcaggccttaccacagggttgacgaggcacgtatcacagtacatctgtaccacggccggtcttacactgtcacatcggcatcacgtcctgggcactgctacggtccatctcgatttatggactgtcaagtagagagaaaaaaacatatcattt
gi|4 : ATGATAAAG-TTC-CAAAAAAC-AGTT-TGGCAAAA--ATTCTCCTTGAATTC--ACT-GGAAGG-T-GAAATTT-AGG-TAA-GAGGGC-ACAA-TTT-TTGC--GGAGCTTTTTTTTAT--ATTC--CATC----------T-A-CA-CTTGAATACTT----G---ACA-TGTCTTTGGAG---T--CT---AA-ATGA-ACAATCAAT-TTGAA--TGG---ATTTCA-TCC--TT-----GATG-T---AGA--A---TTTCCT---GT-------TTTGACTTC-TTCCA-G---T-T--TGTTCT-GTTAGC-G-G-AG-GT-GTA------A--CTG-CAT-GTGGTGGTTTCCATCT-C-TCCGCCTTCAGCCTTC-A---GTTTTC-TTG-ACG-AG--T--TTTGGC--C--GA-TTTCTCTGTGGCAAGTCTCTCCCA-TGTTTTGTTT-AT-GGCTGTG-GA-----GAGGAATCTTC-C-ATGTTTCCTTTTCTTA-ACTG-ACATATT--CTC-TTTCTAT----GTC-C--CAGATG--CACTGT--CTTGG-TT--AG-G--T---TGG--GT-A--A--AAATGTTTTCCA-TTT-AA-T-TCGTTTATT---TTT-GAG-----AAA-ACTT-TT--TCCTTCTTGGT----C---GTATATGCCT--GC-----A-AG--A----TGTTT---ATT-----A-TTTTGG----TGAACTTGAATG-TTT-T-CCAAGAA-ACAACACATTTGGG--AA---C-AAA-TTAGA--TA---TCACACTGATC--ACAGTACA-T-TTTCAC-ATCGTTCTTTGTCATGAAA-GAGGTTAGCA--TCC--AGGGGT-A---GAG-----G--GGGGTGGATT---------TCCTGGA---CGGA-AAAT--TTA----ACG--ACTTT-GTGGATCCTCACATTCCATCAGTGGAGATT-G------------TGTTCATCCCCCACGCAGGCCTTG-CTA---CAGT--TGGACGAGGCCCACGTGTCCGCAGTGCATC-TGTACC-ATGG-C-GGTCCTTACA-CAGGTCACA--T-C-GCAT--CAA--G---GT--CCTGGG---CAG-CTGGG--TA-ACG--GGGGTCCAT-ATT--G-TTCT-
gi|24 : cagaccattggaTTTTGT-ATTGA-TCTACATTA-GGCA----TAA-CA-CTtattcctgaaaattat
gi|5 : -TATCATTGGAG---TACCC---AAAGCGA-ACA-TCCAT-T-GA---TTG----TTTC--TCG--T-------ATT-A---AGA---AT-GTTCTT---AT-------TC--ACTTA-TCCAG-A---T-G--T-TTCTTG----T-A-G-------GTA---------CTG---T-GT--T--GGTTCATCTTCCTCCACTT--AGCTTC------GTTT-C-TGGCACGTAGGTT--TT--GT--C-----TTTCTCT-TGC-AGTCCTCTCC-A-TGTTGG--TT-AT-GGCTGTT-GA-----GAG----TTCC-ATAT---TCTTTTTCT-A-TTCGAACGGCTT--C-G--TT---T----GTA--ATC-GATA--C--TGT---CTGGTT---AG-G--C---TGA--A--A--A--T--TG-TTTC-ATTTT-AA-C-TCAGTTTT--TCTTT-G-G-----CAACTCTTATT--CTTTCTTT--T----C---CTCCGA----TTGC-----A-AT--A-----ATTT--TGTT-----A--TTCA-----TGA-CTAATAGG-TTTAT-TTTG-AT-G-ACCACA---TGT--CA-G-C--GA-CAG---ATA---T-GCACTG--T--AC-GTAAT-T-T--CCC-ATCG-TCTTTGTCGTGAGT-G----T--CA--TCC----GGGT-----GAG-----G--GG--TGA-TTTTCTG----TCT--GATGTCCTATGGAT--TTTTTGTGCG--GCTTT-G---------A------GTTGGCTT-GA-A-G------------TGT---TCTCCCACGC--GCTTTA---A---CGGT--T-GA-GAG-----CGTTT-CACAGTA-ATCTTGTACC--CGG-CGGGT-CTTA-A-CAGGTCACA--TGT-GCA---TCA--C---GT--CCTGGG---CA--CT-GG--T---CG--GGGGTC--TCATC--A-GGTT-G--TGTGGATC-----TAAA-AATGATAT-AA
gi|8 : CATTAGAGCTGT--CCT--AA-AC-GCACA-TCCAT-TGTA---TTGCA-ATTCTA-TCG--TT-----GATA-CTC-AGA--GATATTTCTTTGTAT-------TC--ACTACATTCCA-AATGT-T--TATTCT-G----TTACG-AGCGTGGTGGCATGTA--CTGATGT-GG--T--TTT-CATCTTCCTCCACTT-CAGCTCCTCA---GTTT-CCTGT-ACC-AG--TCTTT--GTATC--AA-TTTCTCTGTGC-AGTCCTCTCC-AATGTTTGG-TT-ATTGGCTCTTTGATTTTAGAG--ATCTCCCATAT---TTCTTTTTC-ATAATG-ACTCTTTTCCTG-TTT---TTTCGATAGCATCAGATATACAATGTAACC--A-T---AG-GAGC---TGGCAAT-A--AAAT--TGTTT-C-A-TTT-AAGCATCAAGTTTTCTCTTTTG-G-----C-A-TCTT-T---CTTTCTTT--T----CTTCCTCCAAGACTTTGC-----A-AT--A-----ATTT--TGTTGGCTAA-TTCAA-----TGA-CCTAAATG-TTTAT-TTGA-TG-AC-ACACA---TGT--CAGG-C-AGA-CAGGA-ATAT--G-ACACTGATT--caactttg
gi|10 : CAT-TGAA---CTG---ATTTCA-TCG--TT-----GATATC---AGA--CAT-TTTCTT---GT-------TC--ATGTC-ATCCAGA---T-G--T-TTCT-G----T-A-G-AGTGT-GTA------A--CTG-TGT-GG--T--TTT-CATCT-CCTCCACGT-CAGTTTTC-A---GTTT-T-TGA-GCG-AG--T--TC--TT--T--AA-TGTCCCTGTGCCAGTCCTCTTC-A-TGTTTTG-TT-AT-GGCTGTT-AA-----GAG--ATTTCC-ACAT---TTCTTTTCT-A-GTTG-ACTCATT--GTG-TTT---T----GTA-TATCAGATA--CAATGT--CTTCG-T---AG-G--C---TGG--ATAA--A--T--TG-TATC-A-CTT-AT-T-TCA-TTTTTCTCTTT-G-G-----CAA-TCTC-TC--CTTTCTTT--T----C---CTCCAAGAC-TTGC-----A-CT--A----T-TTT--TGCT-----A-ATTCA-----TGG-CCCAAATG-TTGAT--TAG-AT-GCCAGACA---AGT---ATGAC-AGA-CTGGA-ATAT--G-ACACTGATT--
gi|21 : -C---AGA--GAT-TTTCTT---GT-------TC--ACTTC-ATCCATA---T-G--T-TTTT-G----T-A-G-AGTG-TGTA------A--CTG-TGT-G---G--TTTTCATC
gi|3 : ttTCAGATA--CAATGT--C-TGG-TCTTACTG--TACCTGG--AT-ACAA--T--TGTTT-C-A-TTT-AA-C-TCATTTTT-CTCTTT-G-GAAAAACGA-TCTT-TT--TTCTTCTT--T----T---CTC-AGGACTT-GC-----AATT--A----TATT---CAATT----A-ATTTA-----TGA-CCTAAATG-TTGAT-CTG--AT-GCCAGACA---AGG---ATG-CAAAA-CCGGATAT----G-ACACTG--T--ACAGTACATT-T--CA--ATCGTTTCTTGTCATGAGA-G----GA-CATTTCT--C-GGGT-A---AAGTGGGTG--GGGTCGA-TTTTC-GAAACCTTTGG----------AAT--TTCA--TGTT---CTTG-G---------ATT--CGTC------AGA-A-AACGGTACACTTGTGT---TCTCCCACGCAGGCCTTACC-A---CAGGGTT-GACGAGG--CACGTAT-CACAGTACATC-TGTACC-ACGGCC-GGT-CTTACA-C-TGTCACA--T-CGGCA---TCA--C---GT--CCTGGG---CA--CT-GC--T--AC-----GGTCCATC-TC--G-AT-----TTATGGA
gi|14 : acagaaattgatataaagttccaaacagtttacatagttttctctttcatctcctgggtgaaatcgaggtaaagactgcaaaaatttctgtggcaagattttgtattgatctacattagggcataacactgaattacttaattacctacgctgcacaactgtccaaaaagcaacatccattgaaatttgtccgtctcagtcgtcttgcagtgatgcgctagatcgttttcatatagagaactccaactttttgagtagtttctgtagcagtgctgtaactgtgtggttttttcatctccctctctctaggcatatatacgcttctggacgagatatctagtattcttctggcggtaccccatcctcgctcggtttggtctctcggtggtaagtttgcactatagatcatgatgtttgatcttaattcctgtgtacgacctttgactcgatatatatatatctcgctctagcaacG-G--T---TGG--AT-A--AA-T--TGTTT-C-A-TTT-AA-C-TCAACTTT-CTCTTT-G-G-----TGA-TCTT-TC--CTTTCTTT--C----C---CTCCAAGAA-TTAT-----A-TC--A----TA-TT--CAAT-----A-TTTTA-----TGA-CCTAAATG-TTGAT-CTG--AA-GCAACACA---GGG--AATG-C-AGA-CCGGA-ATAT--G-ACACTGATA--ACAGTACATT-T--CAC-ACCGTctgtcaagtagagagaaaaaaacatatcattt
gi|9 : TTTTCT---T-G-G-----GGA-TCTT-TTATCTTTCTTT--CAATAC---CTCTA---CTTTAC-----A-TC--AACAATGTCCACCAAT-----GCTTTTAAACTGTGA-CC--GCCG-TCGTTTCTCA-GATGTTATGCAGT-ATG--AATG-C-ATC-CGGGA-ACG---T-GCACTC-CTTGGCAGTGCA-T-TT-CAC-ACCGCTTATTGTCAT-ATA-A----TA-CA--CACATA-GGAT-AAATAAG-----GACGGATT
gi|19 : taGA-CCGGA-ATAT--G-ACACTGATT--ACAGTACA-T-TT-CAC-ATCGTTCTTTATTATGAGA-GG---TA-CA--TCC--G-TGGT-A---GAG-----G--GGGGTAGATTTTCTG----TCATGAATG-TGAACGATT--TTtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcatctgcaccacattttccttacaaaggccacatcgtgttacgtcctgtgcttgattgcgagcgtccatctttacttttgattcatgaaatgaat
gi|16 : CGTTCTTTGTCATGAGA-GG---TA-CA--TCT--T-GGGG-A---GAG-----A--GGGGTGGATTTTCTG----TCCTGGATG-TGAACAATT--TTG---TGAG--GCTTT-G---------A-G--AAGTTAGCTGAAA-A-A------------TGT---TCTTCCGTGCAGGCCTTA-C-A---CAGAT-T-GACGAGG--CATGTAT-CACAGTACATC-TGTAa
gi|11 : T--TTGT--GGCG--GCTTTTG---------A-G---AGCTTGCTGAAA-ACG------------TGT---TTCTCCACGCAAGCTTTA-C-ATAACAGG--TTGACGAGG--CACGT-T-CACAGTACATC-TGTACCGACG----GGT-CTTACA-AAGGTCACACTT-G-GCACTGTCAATCTGAGTTCCT--GGGGCTA--CT-GG--T--ACGGAGGGGTCCATCATCAAG-GTCT-GCTTGTGGATC-----TAAT-AATGA-ATCAAATACCAAACATTGG
gi|9 : GTGCATC-TGCACC-ACAT-T-TTC-CTTACA-AAGGCCACA--T-C-GTGT--T-A--C---GT--CC--TG---TG--CT-TGATT--GCG--AGCGTCCATC--------TTT-ACTTTTGATTCA----TGAA--ATGA-AT-g
gi|23 : tattttcttggggatcttttatctttctttcaatacctctactttacatcaacaatgtccaccaatgcttttaaactgtgaccgccgtcgtttctcagatgttatgcagtatgaatgcatccgggaacgtgcactccttggcagtgcatttcacaccgcttattgtcatataatacacacataggataaataaggacggatttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCATCA----G-GTCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAACAAC-ATTG
gi|13 : CATC--GGATCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAATAGC-AATGTTGGAA-------ATC-ATTCAGCATGCATGATTCATATATAGTAGCCGCATGTAAAAATGTATCTCTCTAACTATAAAG-CA-TTGAAATAAAG-AGC-TGCTTAA--AGATATGTCATCAAAGT-AGAGAGAACAT-AAAAAATAAATCAT
gi|18 : TGAATT-----TGAA-TTTGA-AT-AAATAGC-GATGCTAGAA-------GTT-AGTCA----GCATGATTC----ATAGTAG-TGCA-----------------CTATCCATAAAA-CA-TTGAGAAACAG-AGC-TGCTTAAAG----ATATCTTCAACAT-AGAGATAGCAT-ACAAAATAAACAATT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TTTTCTTTTTTTCCCTTCGTTCAAGGACCCCTTGCTACAAAGGAAATCGTGCCACAATTTTGATAATTCATGACCTAACTGTTATATTTGATGACAAATCATCCAATGTCATGGGCTGAGGTACAACATGGGGAATACGTGACA
Alignments
lowQualScore : 1 111 22 11 111 1 111 111111111 11111111111 2 111 2222 111111 1 1 111111 1 11111 11111111 111 1 1 1111111 111111111 22222 33333333333333333333333333333 11 11111111111 2 111111 111 222222222222222 11111 55555555555555555555 333333333333 111 111 2222 11 111 111 111 11 111 11 11111 33333333333333333333333 2222 2222 1 1 1 1 111 1 1
lowQualScore : 5 55 4 4 777 4 4 4 3 333 8 8 777 5 5 5 00 4 4 4 66 66 66 55 777 55 666 3 8 4 55 4 55 222 4 555555555 3 666 3 777 99999999999 1 55 0 4 4 4 111 4 1111 4 555555 4 666 99 4 4 55 4 8 3 9 88 777 4 4 4 4 66 66 66 999999 2 5 5 0 0 5 5 22222 66 5 5 4 5 5 5 5 66 5 66666666 99 66 1 66 6 4 666 8888 55 55 4 4 4 0 0 4 8 4 7777 3 0000000 6 3 44 3 333333333 7777 555 00000 88888888888888888888888888888 77777777 3 4 999999 3 3 3 3 3 0 88 1 3 1 666 22222222222 7 3 0 44 1 4 3 4 444444 5 66 222 1 99999 1 333 444444444444444 1 66 22222 5 44444444444444444444 0 111111111111 000 888 000 1111 33 3 5 1 5 5 88 5 5 5 77 777 5 555 5 000 000 77 33 5 5 333 77 1 00 55 4 77777 88 5 5 6 66666666666666666666666 1111 1111 6 3 4 1 0 0 3 0 0 333 1 6 3 1 0 3 1 11
lowQualScore : . .. . . ... . . . . ... . . ... . . . .. . . . .. .. .. .. ... .. ... . . . .. . .. ... . ......... . ... . ... ........... . .. . . . . ... . .... . ...... . ... .. . . .. . . . . .. ... . . . . .. .. .. ...... . . . . . . . ..... .. . . . . . . . .. . ........ .. .. . .. . . ... .... .. .. . . . . . . . . .... . ....... . . .. . ......... .... ... ..... ............................. ........ . . ...... . . . . . . .. . . . ... ........... . . . .. . . . . ...... . .. ... . ..... . ... ............... . .. ..... . .................... . ............ ... ... ... .... .. . . . . . .. . . . .. ... . ... . ... ... .. .. . . ... .. . .. .. . ..... .. . . . ....................... .... .... . . . . . . . . . ... . . . . . . . ..
lowQualScore : 0 55 0 0 000 0 0 0 3 999 9 9 555 0 0 0 11 4 4 4 44 99 99 55 000 55 777 3 9 4 55 0 55 555 0 333333333 6 444 6 000 66666666666 0 55 0 0 0 0 000 0 0000 0 555555 0 333 55 0 0 55 5 9 4 9 11 888 4 4 4 4 11 99 99 000000 5 0 0 1 0 0 0 55555 99 0 0 2 0 0 0 0 99 0 55555555 55 11 8 11 4 4 777 5555 55 55 0 0 0 6 6 0 0 0 7777 6 6666666 7 3 66 3 333333333 1111 888 88888 55555555555555555555555555555 77777777 3 2 666666 3 3 3 3 6 4 55 0 6 0 444 44444444444 3 3 2 66 2 4 7 4 666666 0 99 111 4 88888 4 999 333333333333333 7 11 44444 7 00000000000000000000 4 111111111111 000 666 000 7777 66 9 7 4 0 7 77 7 7 7 99 333 7 777 7 000 000 99 66 7 7 777 99 9 66 33 4 55555 66 0 0 7 00000000000000000000000 2222 2222 5 2 2 0 0 0 2 0 0 000 0 7 3 0 7 3 0 77
consensus : NGATCGGAC-AGAAATTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTCTCCTTCAATTCTTCCT-GG---G-TGAA-TTC-A-GGTAAAGATGGCAGAATTTTCTGT-GG-AAGCTTTTTGTATTGATTCTACATTA-GGC-ATAAC-ACTGGAATACTT--TTGAC--ATGT--CATTAGAG---T--CC---AA-GC-A-ACATCCA--T-TGAA--TTG---ATTTCA-TCGT-------T-GATA-TCAGAGA---T-TTTCTT---GT-------TC--ACTTCATCC--AGA-T-GT-TT---CT-GT----AG-AGTG------T-GTAA--CTG--TGT-GG-T--TTTTCATCT-CCTCCACTT-CAGC-CTTCA---GTTT-C-TGG-ACG-AG--T--TT--GT--C--AATTTCTCTGTGCCAGTCCTCTCC-A-TGTTTTGTT-AT-GGCTGTT-GA-----GAG--ATCT-CC-ACATTTC-TTTTCT-A-ACTG-ACTCATT--CTG-TTT---T----GTA-CATCAGATA--CAATGT--CCTGG-T---A----GG--CTGG--ATA-AA-T-TGTTTTC-ATTT-AACTCA-T----TTTTCTCTTT-GG-----CGA-TCTT-TT--CT-TTCTT---------TT----C---CTCCAAGA---C-TTGC----------A-TTA----T------A--TTT--CG----AT-AATTC------A-TGACCTAA-AT-G-TTGATCT-GGATG-CCACA---CA---AGG--AACGC-AGA-CCGGA--ATATGACACTGATTA-CAGTACA-TTTCAC-ATCGTTCTTTGTCATGAGA-G----TA-CA--TCC--GGGGTAGAG-G---GGGGTGGATTTTCTGTCCTGGATG--CGAAC-----GAATTTNTTG--CG-GCTTT-G-A-G-G-------------GTCGGCTGAGA-A----------GTGT---TCTCCCACGCAGGCCTTA-C-A---CAGG--T-GACGAGG--CACGTAT-CGCAGTACATCT-GTACC-ACGG-CGG-T-CTTACA-CAGGTCACA--T-C-GC-A---TC-A---CG---TCCTGGG--CA--CT-GG-T--ACGG--GGGTCCATCATC--GG-TCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAATAGC-AATGTTGGAA-------GTC-ATT---CA---TGCATGATTC----ATA----GTAGCCGCATGTAAAAATGTATCTCTCTAACTATAAAG-CA-TTGAGATAAAG-AGC-TGCTTAAAGAGATATGTCATCAAAGT-AGAGAGAACAT-AAAAAATAAATCATT
Reference ( family-3770 ) : NGATCGGAC-AGAAATTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTCTCCTTCAATTCTTCCT-GG---G-TGAA-TTC-A-GGTAAAGATGGCAGAATTTTCTGT-GG-AAGCTTTTTGTATTGATTCTACATTA-GGC-ATAAC-ACTGGAATACTT--TTGAC--ATGT--CATTAGAG---T--CC---AA-GC-A-ACATCCA--T-TGAA--TTG---ATTTCA-TCGT-------T-GATA-TCAGAGA---T-TTTCTT---GT-------TC--ACTTCNTCC--A-A-T-GT-TT---CT-GT----AG-AGTG------T-GTAA--CTG--TGT-GG-T--TTTTCATCT-CCTCCGCTTTCAGC-CTTCA---GTTT-C-TGG-ACG-AG--T--TT--GT--C--GATTTCTCTGTGCCAGTCCTCTCC-A-TGTTTTGTT-AT-GGCTGTT-GA-----GAG--ATCT-CC-ACATTTC-TTTTCT-A-ACTG-ACTCATT--CTG-TTT---T----GTA-CATCAGATA--CAATGT--CCTGG-T---A----GG--CTGG--ATA-AA-T-TGTTTTC-ATTT-AACTCA-T----TTTTCTCTTT-GG-----CGA-TCTT-TT--CT-TTCTT---------TT----C---CTCCAAGA---CTTTGC----------A-TTA----T------A--TTT--CG----AT-ANTTC------A-TGACCTAA-AT-G-TTGATCT-GGANG-CNACA---CA---AGG--AACGC-AGA-CCGGA--ATATGACACTGATTA-CAGTACATTTTCAC-ATCGTTCTTTGTCATGAGA-G----TA-CA--TCC--GGGGTAGAG-G---GGGGTGGATTTTCTGTCCTGGATG--CGNAC-----GAATTTNTTG--CG-GCTTT-G-A-G-G-------------GTCGGCTGAGA-A----------GTGT---TCTCCCACGCAGGCCTTA-C-A---CAGG--T-GACGAGG--CACGTAT-CGCAGTACATCT-GTACC-ACGG-CGG-T-CTTACA-CAGGTCACA--T-C-GC-A---TC-A---CG---TCCTGGG--CA--CT-GG-T--ACGG--GGGTCCATCATC--GG-TCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAATAGC-AATGTTGGAA-------GTC-ATT---CA---TGCATGATTC----ATA----GTAGCCGCATGTAGAAATGTATCTCTCTANCTATAAAA-CA-TTGAGATAAAG-AGC-TGCTTAAAGAGATATGTCNTCAACGT-AGAGANAGCAT-ANAAAATAAACNATT
gi|1 : GATCGGAC-AGAAGTTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTCTCCTTCAATTCTTCCT-GG---G-TGAA-TTC-A-GGTAAAGATGGCAGAATTT-CTGTTGG-AAGCTTTTTGTATTGATTCTACATTA-GAC-ACA-C-ACTGGAATACTT--TTGAC--ATGT--CATTAGAG---T--CC---AA-GC-A-ACATCCA--T-TCGA--TTG---ATTTCA-TCGT-------TAGATA--CAGAGA---T-TTTCTT---GT-------TC--ACTTCTTCC--A-A-T-TT-TT---CT-GC----AG-AGTG------TTGTAA--CTG--CGT-GT-T--TTTTCATCT-CCTCCACTTTCAGC-TTTTA---GTTT-C-TGG-ACG-AG--T--TT--GT--C--AATTTCTCTGTGCCAGTCCTCTCC-A-TGTTTT-TT-AT-GGCTGTT-GA-----GAG--ATCT-CC-A-ATTTC-TTTTCT-A-ACTGCACTCATT--CTG-TTT---T----GTA-CATCAGATA--CAATGT--CCTGG-T---A----GG--TTGG--AT--AA-T-TGTTTTC-ATTT-AACTCATT----TTTTCTCTTT-GG-----CGA-TCTT-TT--CT-TTCCT---------TT----C---CTCCAAGA---CTTTGC----------A-TTA----T------A--TTT--CA----AT-ATTTT------A-TGACCTAG-AT-G-TTGATCT-GAAAG-CAACA---CA---AGG--AATGC-AGA-CCGGA--ATA-GACACTGACTA-CAGTACA--TTCAC-ATCGTTCTTTGTCATGAGA-G----TA-CA--TCC--AGGGTAGAG-G---GGATTGAGTTTTCTGTCTTGGATG--CGTAC-----AAATTTGTTG--CT-GCTTT-G-ACGCG-------------GCCAGCTGAGA-A----------ATGC---TCTCCCATGCAGGCCTTA-C-A---CAGG--T-GACGAGG--CACGTAT-CACAGTACATCT-GTACC-ACGG-CGG-T-CTTACA-CAGGTCACA--T-C-GC-AT--TC-A---CG---TCT--GG--CA--CT-GG-T--ACGG--GGGTCCATCATC--GA-TCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAATAGC-AATGTTGGAA-------ATC-ATTCAGCA---TGCATGATTCATATATA----GTAGCCGCATGTAAAAATGTATCTCTCTAACTATAAAG-CATTTGAAATAAAG-AGC-TGCTTAAAGAGATATGTCATCAAAGTAAGAGAGAACATAAAAAAATAAATCATT
gi|10 : tCA--T-TGAA--CTG---ATTTCA-TCGT-------T-GATA-TCAGACA---T-TTTCTT---GT-------TC--ATGTCATCC--AGA-T-GT-TT---CT-GT----AG-AGTG------T-GTAA--CTG--TGT-GG-T--TTT-CATCT-CCTCCACGT-CAGT-TTTCA---GTTT-T-TGA-GCG-AG--T--TC--TT--T--AATGTCCCTGTGCCAGTCCTCTTC-A-TGTTTTGTT-AT-GGCTGTT-AA-----GAG--ATTT-CC-ACATTTC-TTTTCT-A-GTTG-ACTCATT--GTG-TTT---T----GTA-TATCAGATA--CAATGT--CTTCG-T---A----GG--CTGG--ATA-AA-T-TG-TATC-ACTT-ATTTCA-T----TTTTCTCTTT-GG-----CAA-TCTC-TC--CT-TTCTT---------TT----C---CTCCAAGA---C-TTGC----------A-CTA----T---------TTT--TG----CT-AATTC------A-TGGCCCAA-AT-G-TTGAT-T-AGATG-CCAGA---CA---AGT--ATGAC-AGA-CTGGA--ATATGACACTGATT
gi|11 : TTTGTGG--CG-GCTTTTG-A-G-A-------------GCTTGCTGAAA-AC---------GTGT---TTCTCCACGCAAGCTTTA-C-ATAACAGG--TTGACGAGG--CACGT-T-CACAGTACATCT-GTACCGACGG---G-T-CTTACA-AAGGTCACACTT-G-GC-ACTGTC-AATCTGAGTTCCTGGGGCTA--CT-GG-T--ACGGAGGGGTCCATCATCAAGG-TCT-GCTTGTGGATC-----TAAT-AATGA-ATCAAATACCAAACATTGG
gi|12 : G--ATGATAAAG-TTC-CAAA---C-AATT-TA-CATAGTTCTTCTCCAACAATTCTTCCTGGG---G-TGAA-TTG-A-GGTAAAGATGGCAGCATTTTCTGT-GG-AAGCTTTTTGTATTGA-TCTACATTA-GAC-ATAAC-ACT-GAATACTT--TTGAC--ATGT--CCTTAGAG---T--CCA--AA-GC-A-AAATCTA--T-AGAA--TTG---ATTTCA-TTGT-------T-GATA-TCGGAAA---T-TTTCg
gi|13 : CATC--GGATCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAATAGC-AATGTTGGAA-------ATC-ATT---CAGCATGCATGATTC----ATATATAGTAGCCGCATGTAAAAATGTATCTCTCTAACTATAAAG-CA-TTGAAATAAAG-AGC-TGCTTAA--AGATATGTCATCAAAGT-AGAGAGAACAT-AAAAAATAAATCAT
gi|14 : ----GG--TTGG--ATA-AA-T-TGTTT-C-ATTT-AACTCA-A----CTTTCTCTTT-GG-----TGA-TCTT-TC--CT-TTCTT---------TC----C---CTCCAAGA---A-TTAT----------A-TCA----T------A---TT--CA----AT-ATTTT------A-TGACCTAA-AT-G-TTGATCT--GAAG-CAACA---CA---GGG--AATGC-AGA-CCGGA--ATATGACACTGATAA-CAGTACA-TTTCAC-ACCGT
gi|15 : GGAC-AGAAATTG--ATGAAAAAG-TGC-TAAA---C-AGTT-TA-CAAAGTTTTTCTCCTTCGATTCTTCCT-GG---GTTGAA-TTC-T-GGTAAAGATGGCAGAATTTTCTGT-GG-AAGCTGTTTGTATTGA-TCTACATTA-GGC-ATAAA-GCT-GAATACTT--TTGAC--ATGT--CATTAGAG---T--C
gi|16 : CGTTCTTTGTCATGAGA-GG---TA-CA--TCT--TGGGGAGAG-A---GGGGTGGATTTTCTGTCCTGGATG--TGAAC------AATTTTGTG--AG-GCTTT-G-A-GAA-------------GTTAGCTGAAA-A----------ATGT---TCTTCCGTGCAGGCCTTA-C-A---CAGAT-T-GACGAGG--CATGTAT-CACAGTACATCT-GTA
gi|17 : -TCTT-TT---T-TTCCC---------TT----C---GTTCAAGGACCCCTTGCTACAAAGGAAA-TCG----TGCCACAA--TTT--TG----AT-AATTC------A-TGACCTAA-CT-G-TT
gi|18 : tttTGAATT-----TGAA-TTTGA-AT-AAATAGC-GATGCTAGAA-------GTT-AGT---CA----GCATGATTC----ATA----GTAGT-GCA-----------------CTATCCATAAAA-CA-TTGAGAAACAG-AGC-TGCTTAAAG----ATATCTTCAACAT-AGAGATAGCAT-ACAAAATAAACAATTatatttgatgacaaatcatccaatgtcatgggctgaggtacaacatggggaatacgtgaca
gi|19 : GA-CCGGA--ATATGACACTGATTA-CAGTACA-TTTCAC-ATCGTTCTTTATTATGAGAGG----TA-CA--TCC--GTGGTAGAG-G---GGGGTAGATTTTCTGTCATGAATG--TGAAC-----GATTTT
gi|2 : GATCGGACCAGAAATTG--ATGATAAAAATTCGCAAA---CCAGTTCTG-CATAGTTCTTCTCCTTC-ATTCTTCCTGGG---G-TGAA-TTC-AGGGTAAAGA-GGCAGAATTTTCTGT-GG-AAGCTTTTTGTATTGA-TCTAC-TTA-GGCAATAACAACT-GAATACTT--TCGAC--ATGT---ATTCGAG---T--CA---AA-GT-A-ACATCCA--TATGAA--TTG---ATTTCA-T-GT-------T-GATA-TCAGAGA---T-TTTCTT---GT-------TTG-ACTTCATCC--AGA-T-GT-TT---CT-GT----AG-AGTG------T-GTAATTCTG--TGT-GG-T--TTTTCAT-T-CCTCCACTTCAAGC-CTTCA---ATTT-C-TGG-ACG-AG--T--TT--GT--CA-AATTTCTCTGTGCCAGTCCTCTCC-A-TGTTTTGTTAAT-GGCT-TT-GA-----GAG--ATCT-CC-ACATTTC--TTTCT-A-ACTG-ACTCATT--CTG-TTT---T----GTA-CATCAGATA--CAATGT--CCTGG-T---A-----G--TTGG--ATA-AA-T-TG-TTTC-GTTTAAACTCA-T----TTTTCTCTTT-GA-----CAATTCCT-TT--CC-TTTTT---------TT----C---CTCGAAGA---C-TTGCCCCAA-----A-TT-----T------AATTTT--TG----AT-AATTC------A-TGGACTAA-AT-GTTTTATTT-GGATG-ACACA---CA---ATGTTCACGCAAGACCCGGAATATATGACACTGATTA-CAGTACA-TTTCACAATCGTTCTTTGTCATGAGAGG----TA-CA--CCC--GGGTAAGAG-G---GGGGTGGAATTTCTGTCCTTGATGTCCCAAT-----GA--TTTTTG--TGAGCTTT-GAA-A-G-------------ATCGGCTGAAA-A----------GTGT---TCTCCCACGCAGGCCTTA-C-A---CAGGT-T-GACGAGGC-CACGTAT-CGCAGTACATCT-GTA-C-ACGG-AGG-T-CTT-CAGCAGTTCACA--T-C-GCAA---TC-A---CG---TCCTGGG--CAACCT-GG-TAAACGG--GGGTCCATCATCA-GA-TCTCGCTGGTGGCCCCTGAATAAATTATGA-AT-AAATAGC-ATTGTTGGAATATAACTGTCAATT---C----TACATGATTC----ATA----GTAGCTGCATGTAGAAATGTATCTCTCAAGCTGTAAAACCA-TTT-GATAAAGAAGCTTGCTTAa
gi|20 : TCCGAC-AGAAATTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTCTCCTTCAATTTTTTCTGGG---G-TGAA-
gi|21 : -TCAGAGA---T-TTTCTT---GT-------TC--ACTTCATCC--ATA-T-GT-TT---TT-GT----AG-AGTG------T-GTAA--CTG--TGT-GG----TTTTCATC
gi|22 : tTCGGGC-AGAAATTG--CTGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTC
gi|23 : CATCA----GG-TCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAACAAC-ATTG
gi|24 : TTTTGTATTGAT-CTACATTA-GGC-ATAAC-ACT
gi|3 : AC-AGAAATTG--AT-ATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTT-TTCTCTTTCA--TCT-CCT-GG---G-TGAA-ATCGA-GGTAAAGACTGCAAAAATTTCTGT-GGCAAGATTTT-GTATTGA-TCTACATTAGGGC-ATAAC-ACTGAATTACTTAATT-ACCTACGCTGCACAACTG---T--CCAAAAA-GC-A-ACATCCA--T-TGAAATTTGTCCGTCTCAGTCGTCTTGCAGT-GATG-CGCTAGATCGT-TTTCAT---ATAGAGAACTCCAACTT-TTTG--A-G-TAGT-TT---CT-GT----AGCAGTGC-----T-GTAA--CTG--TGT-GGTT--TTTTCATCT-CCCTCTCTCTAGGC-ATATATACGCTT-C-TGG-ACG-AG--
gi|3 : TCAGATA--CAATGT--C-TGG-TCTTACTGTAC--CTGG--ATACAA-T-TGTTT-C-ATTT-AACTCA-T----TTTTCTCTTT-GGAAAAACGA-TCTT-TT--TTCTTCTT---------TT----C---T--CAGGA---CTT-GC----------AATTA----T------A--TT---CA----ATTAATTT------A-TGACCTAA-AT-G-TTGATCT--GATG-CCAGA---CA---AGG---ATGCAAAA-CCGG---ATATGACACTG--TA-CAGTACA-TTTCA--ATCGTTTCTTGTCATGAGA-G----GA-CATTTCT--CGGGTAAAGTGGGTGGGGTCGATTTTC-------GA------AACCTTTGGAATTTCATG--T---TCTT-G---G-A-------------TTCGTCAGAAA-ACGGTACACTTGTGT---TCTCCCACGCAGGCCTTACC-A---CAGGGTT-GACGAGG--CACGTAT-CACAGTACATCT-GTACC-ACGGCCGG-T-CTTACA-C-TGTCACA--T-CGGC-A---TC-A---CG---TCCTGGG--CA--CT-GC-T--AC-----GGTCCATC-TC--GA-T-----TTATGGAatatctagtattcttctggcggtaccccatcctcgctcggtttggtctctcggtggtaagtttgcactatagatcatgatgtttgatcttaattcctgtgtacgacctttgactcgatatatatatatctcgctctagcaactcagatacaatgtctggtcttactgtacctggatacaattgtttcatttaactcatttttctctttggaaaaacgatcttttttcttcttttctcaggacttgcaattatattcaattaatttatgacctaaatgttgatctgatgccagacaaggatgcaaaaccggatatgacactgtacagtacatttcaatcgtttcttgtcatgagaggacatttctcgggtaaagtgggtggggtcgattttcgaaacctttggaatttcatgttcttggattcgtcagaaaacggtacacttgtgttctcccacgcaggccttaccacagggttgacgaggcacgtatcacagtacatctgtaccacggccggtcttacactgtcacatcggcatcacgtcctgggcactgctacggtccatctcgatttatggactgtcaagtagagagaaaaaaacatatcattt
gi|4 : acagaaattgatataaagttccaaacagtttacatagttttctctttcatctcctgggtgaaatcgaggtaaagactgcaaaaatttctgtggcaagattttgtattgatctacattagggcataacactgaattacttaattacctacgctgcacaactgtccaaaaagcaacatccattgaaatttgtccgtctcagtcgtcttgcagtgatgcgctagatcgttttcatatagagaactccaactttttgagtagtttctgtagcagtgctgtaactgtgtggttttttcatctccctctctctaggcatatatacgcttctggacgagatatctagtattcttctggcggtaccccatcctcgctcggtttggtctctcggtggtaagtttgcactatagatcatgatgtttgatcttaattcctgtgtacgacctttgactcgatatatatatatctcgctctagcaacATTGGAATGATAAAG-TTC-CAAAAAAC-AGTT-TGGCAAAA--ATTCTCCTTGAATTC--ACT-GGAAGG-TGAAATTT-A-GGTAA-GAGGGCACAATTTT-TGC-GG-AGCTTTTTTTTAT--ATTCCATCT----------AC-ACTTGAATACTT----GAC--ATGT--CTTTGGAG---T--CT---AA-ATGA-ACAATCAATT-TGAA--TGG---ATTTCA-TCCT-------T-GATG-T---AGA---A-TTTCCT---GT-------TTTGACTTCTTCC--A-G-T-TTGTT---CT-GTTAGCGG-AG-G------T-GTAA--CTGCATGT-GG-TGGTTTCCATCT-C-TCCGCCTTCAGC-CTTCA---GTTTTC-TTG-ACG-AG--T--TTTGGC--C--GATTTCTCTGTGGCAAGTCTCTCCCA-TGTTTTGTTTAT-GGCTGTG-GA-----GAGGAATCTTCC-ATGTTTCCTTTTCTTA-ACTG-ACATATT--CTC-TTTCTAT----GTC-C--CAGATG--CACTGT--CTTGG-TT--A----GG--TTGG--GTA-AA-AATGTTTTCCATTT-AATTCG-T----TTATTTTTGA-GA-----AAA-CTTT-TT--CC-TTCTTGGTCGTATATG----C---CTGCAAGA------TGT------------TTA----TT-----A--TTT--TG----GT-GA-------------ACTTGA-AT-G-TTTTCCA-AGAAA-CAACA---CATTTGGG--AAC---AAA-TTAGA---TATCACACTGATCA-CAGTACATTTTCAC-ATCGTTCTTTGTCATGAAA-GAGGTTAGCA--TCCA-GGGGTAGAG-G---GGGGTGGATT-----TCCTGGA----CGGA------AAATTTA--A--CG-ACTTT-G-T-G-GATCCTCACATTCCATCAGTGGAGATT----------GTGTTCATCCCCCACGCAGGCCTTG-CTA---CAGT--TGGACGAGGCCCACGTGTCCGCAGTGCATCT-GTACC-ATGG-CGG-TCCTTACA-CAGGTCACA--T-C-GC-A---TCAA---GG---TCCTGGG--CAG-CTGGG-TA-ACGG--GGGTCCAT-ATT--GT-TCT-ctgtcaagtagagagaaaaaaacatatcattt
gi|5 : cagaccTAT--CATTGGAG---TACCC---AAAGCGA-ACATCCA--T-TGA---TTG----TTTC--TCGT------------A-TTAAGAA---T-GTTCTT---AT-------TC--ACTT-ATCC--AGA-T-GT-TT---CTTGT----AG-------------GTA---CTG--TGTTGG-T--T---CATCTTCCTCCACTT--AGC--TTC----GTTT-C-TGGCACGTAGGTT--TT--GT--C----TTTCTCT-TGC-AGTCCTCTCC-A-TGTTG-GTT-AT-GGCTGTT-GA-----GAG----TT-CC-ATATTCT-TTTTCT-A-TTCG-AACGGCT--TCG-TTT--------GTA--ATC-GATA--C--TGT--C-TGG-TT--A----GG--CTGA--A---AA-T-TGTTT-C-ATTTTAACTCA-G----TTTT-TCTTT-GG-----CAACTCTTATT--CT-TTCTT---------TT----C---CTCCGA-------TTGC----------A-ATA-----------A--TTT--TG----TT-A-TTC------A-TGAC-TAATAG-G-TTTATTT-TGATGACCACATGTCA---GCG--A---C-AGA---------TATG-CACTG--TA-C-GTA-ATTTCC-C-ATCGT-CTTTGTCGTGAGT-G----T--CA--TCC--GGG-T---G-A---GGGGTG-ATTTTCTGTCT--GATGT-CCTAT-----GGATTTTTTGTGCG-GCTTT-G-A-G----------------TTGGCTT-GA-A----------GTGT---TCTCCCACGC--GCTTTA---A---CGGT--T-GA-GAG-----CGTTT-CACAGTA-ATCTTGTACC--CGG-CGGGT-CTTA-A-CAGGTCACA--TGT-GC-A---TC-A---CG---TCCTGGG--CA--CT-GG-T---CGG--GGGTC--TCATC--AG-GTT-G--TGTGGATC-----TAAA-AATGATAT-AAtattcctgaaaattat
gi|6 : TCGGAC-AGAAATTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTTTTCTTCAATTCTTCC--GGAA-G-TGAA-TTC-A-GGTAAAGATGGCATAATTTTCTGT-GG-AAGCTTTTTGTATTGAT-CTACATTA-GGC-ATAAC-ACTG-AATACTT--TTGAC--ATGT--CATTAGCG---T--CC---AAAGC-A-ACATCCC--T-TGAA--TTG---ATTTCA-TCGT-------T-GATA-TCAGATA---C-TTTCTT---GT--------C--ACTTCATCC--AGA-T-GT-TTT--CT-GTT---AG-AGTG------T-GTAA--CTG--TGT-GG-T--TTT-CATCT-CCTCCACTT-CATC-CTTCA---ATTT-C-TTG-ACG-AG--T--TT--GT--TCAAATTTCTCTGTGCCAGTCCTCTCC-A-TGTTTTGTT-AT-GGCTGTT-GA-----GAG--ATCT-CC-ACATATC-TTTTCT-A-ACTG-ACTCATT--CTATTTT---T----GTA--ATCAGACA--CA--GT--CCTGGTT---A----GG--CTGG--ATA-AA-T-TG-TTTC-ATTT-AACTCA-T----TCTTCTCTTT-GG-----TAA-TCTT-TT--CT-TTCTT---------AT----C---CTCCAAAA---C-TTGC----------A-TTA----T---------TTT--CA----AT-ATTTT------A-TGACCTAA-AT-G-TTGATCT--GAAG-CAACA---CA---AGG--AACGC-AGA-CTGGA--ATCTGACACTGATTA-CAGTACA-TCTCAC-ATCGCTCTTTATCATGAGA-G----caactttg
gi|7 : AC-AGACATTG--ATGATAAAG-TCC-CAAA---C-AGTT-TA-CACAGTTCCTTGCCATGAATTCTTCCT-GG---GGTGAAATTT-T-GA-AAATAGGGCAGAATTTTCTGT-GG-AAGCTTTTTGTATTGAT-CTACATTA-GAC-ATAAC-ACTG-AATACCT--TTGAC--ATTT--CATTAGAG---T--CC---AAAGC-A-ACATCCA--T-CAAA--TTG---ATTT----------------GAT---CAGAGA---T-TTTCTT---GT-------TG--GCTTCATCC--A-AAT-GT-TT---CT-GT----AG-AGTG------T-GTAA--CTG--TGT-GG-T--TTT-CATCT-CCTCCGCTT-CAGC-TTTCA---GTTT-C-TGG-ACG-AC--T--TT--CT--C--GATTTCTCGGTGCCAGTCCTCTCC-A-TGTTTTGTT-AT-GGCTGTT-AA-----GAG--ATAT-GC-ATGTTTC-TTTTCT-A-ATTG-ACTCATT--CTG-TTT---T----GCA-CATCAGATA--CAATGT--CTTGG-T---A----GG--TTGG--ATA-AA-T-TG-TTTC-ATTT-AACTCT-T----TTTTCTCTCT-TG-----CTA-TCTT-TT--CT-TTCTT---------TT----C---CTCCAAGA---C-TTGC----------A-TTG----T---------TTT--TG----AT-AATTC------A-TGCCCTAA-AT-G-TTGATTT--AATG-TCAGG---CA---AGT--ATGAC-AGA-CCGGA--ATATGACACTTAT
gi|8 : ttca--CATTAGAGCTGT--CCT--AA-AC-GCACATCCA--T-TGTA--TTGCA-ATTCTA-TCGT-------T-GATACTCAGAGA---TATTTCTTTGTAT-------TC--ACTACATTCCAA-A-T-GT-TTATTCT-GTTACGAG-CGTGGTGGCAT-GTA---CTGA-TGT-GG-T--TTT-CATCTTCCTCCACTT-CAGCTCCTCA---GTTT-CCTGT-ACC-AG--TCTTT--GTATC--AATTTCTCTGTGC-AGTCCTCTCC-AATGTTTGGTT-ATTGGCTCTTTGATTTTAGAG--ATCT-CCCATATTTC-TTTTTC-ATAATG-ACTCTTTTCCTG-TTT---TTTCGATAGCATCAGATATACAATGTAACC--A-T---A----GGAGCTGGCAATA-AAAT-TGTTT-C-ATTT-AAG-CA-TCAAGTTTTCTCTTTTGG-----C-A-TCTT-T---CT-TTCTT---------TT----CTTCCTCCAAGA---CTTTGC----------A-ATA-----------A--TTT--TGTTGGCT-AATTC------AATGACCTAA-AT-G-TTTATTT-G-ATG-ACACA---CA---TGT--CAGGC-AGA-CAGGA--ATATGACACTGATT
gi|9 : ----TTTTCT---T-GG-----GGA-TCTT-TTATCT-TTCTT---------TCAATAC---CTCTA------CTTTAC----------A-TCAACAAT------G--TCCACCA----AT-GCTTTTAAACTG-TGACCGCC-GTCG-TT--TCTCAGATG-TTATG---CAGT-ATG--AATGC-ATC-CGGGA--ACGTG-CACTCCTTGGCAGTGCATTT-CAC-ACCGCTTATTGTCAT-ATA-A----TA-CA--CACATAGGATAAAT-A---AGGACGGATTT
gi|9 : taGTGCATCT-GCACC-ACAT-TTT-C-CTTACA-AAGGCCACA--T-C-GT-G---TT-A---CG---TCCTGTG--C---TT-GATT--GCGA--GCGTCCATC--------TTT-ACTTTTGATTCA----TGAA--ATGA-AT-cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcatctgcaccacattttccttacaaaggccacatcgtgttacgtcctgtgcttgattgcgagcgtccatctttacttttgattcatgaaatgaat
Alignments
lowQualScore : 1 111 22 11 111 1 111 111111111 11111111111 111 2222 111111 1 111111 1 1 1111 1 11111111 11111111111 1 1111111 111111111 111111 3333333333333333333333333 11111 1111111111111111 11111111111 111111 111 2222222222222 11111 55555555555555555555 333333333333 111 111 2222 11 111 111 111 11 111 11 11111 33333333333333333333333 2222 2222 1 1 1 1 111 1 1
lowQualScore : 5 55 4 4 777 4 4 4 3 333 8 8 777 5 0 5 5 00 4 4 4 66 66 66 55 777 55 666 3 8 4 55 4 55 222 4 555555555 3 666 3 777 99999999999 1 4 0 111 4 1111 4 999999 666 99 4 4 55 4 8 8 4 4 88 777 4 4 4 4 66 66 66 333333 0 0 0 5 0000 66 66 0 4 5 5 5 5 66 5 66666666 99 66 1 66 6 4 88888888888 55 666 4 5 5 4 8 4 4 4 4 3 0000000 6 3 44 3 999999999 222222 2222222222222222222222222 7777 3 1 3 11111 44 3 3 3 3 8888888888888888 3 3 666 22222222222 7 3 0 44 1 4 4 4 444444 5 66 222 1 99999 1 333 0 8888888888888 1 66 22222 5 44444444444444444444 0 111111111111 000 888 000 1111 33 3 5 1 5 5 88 5 5 5 77 777 5 555 5 000 000 77 33 5 5 333 77 1 00 55 4 77777 88 5 5 6 66666666666666666666666 1111 1111 6 3 0 1 0 0 3 0 0 333 3 3
lowQualScore : . .. . . ... . . . . ... . . ... . . . . .. . . . .. .. .. .. ... .. ... . . . .. . .. ... . ......... . ... . ... ........... . . . ... . .... . ...... ... .. . . .. . . . . . .. ... . . . . .. .. .. ...... . . . . .... .. .. . . . . . . .. . ........ .. .. . .. . . ........... .. ... . . . . . . . . . . ....... . . .. . ......... ...... ......................... .... . . . ..... .. . . . . ................ . . ... ........... . . . .. . . . . ...... . .. ... . ..... . ... . ............. . .. ..... . .................... . ............ ... ... ... .... .. . . . . . .. . . . .. ... . ... . ... ... .. .. . . ... .. . .. .. . ..... .. . . . ....................... .... .... . . . . . . . . . ... . .
lowQualScore : 0 55 0 0 000 0 0 0 3 999 9 9 555 0 4 0 0 11 4 4 4 44 99 99 55 000 55 777 3 9 4 55 0 55 555 0 333333333 6 444 6 000 66666666666 1 0 7 000 0 0000 0 555555 333 55 0 0 55 5 9 9 4 4 11 888 4 4 4 4 11 99 99 666666 0 1 0 0 6666 99 99 0 2 0 0 0 0 99 0 55555555 55 11 8 11 4 4 33333333333 55 333 0 5 7 0 0 0 0 0 0 6 6666666 7 3 66 3 222222222 111111 3333333333333333333333333 1111 3 6 3 77777 66 3 3 3 3 2222222222222222 5 3 444 44444444444 3 3 2 66 2 4 4 4 666666 0 99 111 4 88888 4 999 1 0000000000000 7 11 44444 7 00000000000000000000 4 111111111111 000 666 000 7777 66 9 7 4 0 7 77 7 7 7 99 333 7 777 7 000 000 99 66 7 7 777 99 9 66 33 4 55555 66 0 0 7 00000000000000000000000 2222 2222 5 2 8 2 0 0 2 0 0 000 3 3
consensus : NGATCGGAC-AGAAATTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTCTCCTTCAATTCTTCCT-GG---G-TGAA-TTC-A-GGTAAAGATGGCAGAATTTTCTG-TGG-AAGCTTTTTGTATTGATTCTACATTA-GGC-ATAAC-ACTGGAATACTT--TTGAC--ATGT--CATTAGAG---T--CC---AA-GC-A-ACATCCA--T-TGAA--TTG---ATTTCA-TCGT-------T-GATA-TCAGAGA---T-TTTCTT---GT-------TC--ACTTCAT-CCAGATGTTT---CT-GT----AG-AGTG------TGTAA--CTG--TGT-GG-T--TTTTCATCT-CCTCCAC-TTC-A-GC-CTTCA---GTTT-C-TGG-ACG-AG--T--TT--GT--C--AATTTCTCTGTGCCAGTCCTCTCC-ATGTTTTGTT-A-TGGC----TG--TTGAGAG--ATCT-CCACATTTC-TTTTCT-A-ACTG-ACTCATT--CTG-TTT---T----GTA-CATCAG--ATACAATGT--CCTGG-T---A----G--GCTGG--AT-A-AAT-TGTTTTC-ATTT-AA-C-TC-A-TTTTTCTC-TTTGG-----CGA-TCTT-TT--CT-TTCTT---------TTCCTCCAAGA----C-TTGC----------A-TTAT------A--TTTC----GAT-AAT-TC-----ATGACCT--AA-A-TG-TTG-A-----------TCT-GGATG-CCACA---CA---AGG--AACGC-AGA-CCGGA--ATATGACACTGATTA-CAGTACATTT-CAC-ATCGTTCTTTGTCATGAGA-G----TA-CA--TCC--GGGGTAGAG-G---GGGGTGGATTTTCTGTCCTGGATG--CGAAC-----GAATTTNTTG--CG-GCTTT-G-A-G-G-------------GTCGGCTGAGA-A----------GTGT---TCTCCCACGCAGGCCTTA-C-A---CAGG--T-GACGAGG--CACGTAT-CGCAGTACATCT-GTACC-ACGG-CGG-T-CTTACA-CAGGTCACA--T-C-GC-A---TC-A---CG---TCCTGGG--CA--CT-GG-T--ACGG--GGGTCCATCATC--GG-TCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAATAGC-AATGTTGGAA-------GTC-ATT---CA---TGCATGATTC----ATA----GTAGCCGCATGTAAAAATGTATCTCTCTAACTATAAAG-CA-TTGAGATAAAG-AGC-TGCTTAAAGAGATATGTCATCAAAGT-AGAGAGAACAT-AAAAAATAAATCATT
Reference ( family-3770 ) : NGATCGGAC-AGAAATTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTCTCCTTCAATTCTTCCT-GG---G-TGAA-TTC-A-GGTAAAGATGGCAGAATTTTCTG-TGG-AAGCTTTTTGTATTGATTCTACATTA-GGC-ATAAC-ACTGGAATACTT--TTGAC--ATGT--CATTAGAG---T--CC---AA-GC-A-ACATCCA--T-TGAA--TTG---ATTTCA-TCGT-------T-GATA-TCAGAGA---T-TTTCTT---GT-------TC--ACTTCAT-CCAGATGTTT---CT-GT----AG-AGTG------TGTAA--CTG--TGT-GG-T--TTTTCATCT-CCTCCAC-TTC-A-GC-CTTCA---GTTT-C-TGG-ACG-AG--T--TT--GT--C--AATTTCTCTGTGCCAGTCCTCTCC-ATGTTTTGTT-A-TGGC----TG--TTGAGAG--ATCT-CCACATTTC-TTTTCT-A-ACTG-ACTCATT--CTG-TTT---T----GTA-CATCAG--ATACAATGT--CCTGG-T---A----G--GCTGG--AT-A-AAT-TGTTTTC-ATTT-AA-C-TC-A-TTTTTCTC-TTTGG-----CGA-TCTT-TT--CT-TTCTT---------TTCCTCCAAGA----C-TTGC----------A-TTAT------A--TTTC----GAT-AAT-TC-----ATGACCT--AA-A-TG-TTG-A-----------TCT-GGATG-CCACA---CA---AGG--AACGC-AGA-CCGGA--ATATGACACTGATTA-CAGTACATTT-CAC-ATCGTTCTTTGTCATGAGA-G----TA-CA--TCC--GGGGTAGAG-G---GGGGTGGATTTTCTGTCCTGGATG--CGAAC-----GAATTTNTTG--CG-GCTTT-G-A-G-G-------------GTCGGCTGAGA-A----------GTGT---TCTCCCACGCAGGCCTTA-C-A---CAGG--T-GACGAGG--CACGTAT-CGCAGTACATCT-GTACC-ACGG-CGG-T-CTTACA-CAGGTCACA--T-C-GC-A---TC-A---CG---TCCTGGG--CA--CT-GG-T--ACGG--GGGTCCATCATC--GG-TCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAATAGC-AATGTTGGAA-------GTC-ATT---CA---TGCATGATTC----ATA----GTAGCCGCATGTAAAAATGTATCTCTCTAACTATAAAG-CA-TTGAGATAAAG-AGC-TGCTTAAAGAGATATGTCATCAAAGT-AGAGAGAACAT-AAAAAATAAATCATT
gi|1 : GATCGGAC-AGAAGTTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTCTCCTTCAATTCTTCCT-GG---G-TGAA-TTC-A-GGTAAAGATGGCAGAA-TTTCTGTTGG-AAGCTTTTTGTATTGATTCTACATTA-GAC-AC-AC-ACTGGAATACTT--TTGAC--ATGT--CATTAGAG---T--CC---AA-GC-A-ACATCCA--T-TCGA--TTG---ATTTCA-TCGT-------TAGATA--CAGAGA---T-TTTCTT---GT-------TC--ACTTCTT-CCA-ATTTTT---CT-GC----AG-AGTGT-----TGTAA--CTG--CGT-GT-T--TTTTCATCT-CCTCCACTTTC-A-GC-TTTTA---GTTT-C-TGG-ACG-AG--T--TT--GT--C--AATTTCTCTGTGCCAGTCCTCTCC-ATGTTTT-TT-A-TGGC----TG--TTGAGAG--ATCT-CCA-ATTTC-TTTTCT-A-ACTGCACTCATT--CTG-TTT---T----GTA-CATCAG--ATACAATGT--CCTGG-T---A----G--GTTGG--AT---AAT-TGTTTTC-ATTT-AA-C-TC-ATTTTTTCTC-TTTGG-----CGA-TCTT-TT--CT-TTCCT---------TTCCTCCAAGA----CTTTGC----------A-TTAT------A--TTTC----AAT-ATT-TT-----ATGACCT--AG-A-TG-TTG-A-----------TCT-GAAAG-CAACA---CA---AGG--AATGC-AGA-CCGGA--ATA-GACACTGACTA-CAGTACA-TT-CAC-ATCGTTCTTTGTCATGAGA-G----TA-CA--TCC--AGGGTAGAG-G---GGATTGAGTTTTCTGTCTTGGATG--CGTAC-----AAATTTGTTG--CT-GCTTT-G-ACGCG-------------GCCAGCTGAGA-A----------ATGC---TCTCCCATGCAGGCCTTA-C-A---CAGG--T-GACGAGG--CACGTAT-CACAGTACATCT-GTACC-ACGG-CGG-T-CTTACA-CAGGTCACA--T-C-GC-AT--TC-A---CG---TCT--GG--CA--CT-GG-T--ACGG--GGGTCCATCATC--GA-TCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAATAGC-AATGTTGGAA-------ATC-ATTCAGCA---TGCATGATTCATATATA----GTAGCCGCATGTAAAAATGTATCTCTCTAACTATAAAG-CATTTGAAATAAAG-AGC-TGCTTAAAGAGATATGTCATCAAAGTAAGAGAGAACATAAAAAAATAAATCATT
gi|10 : tCA--T-TGAA--CTG---ATTTCA-TCGT-------T-GATA-TCAGACA---T-TTTCTT---GT-------TC--ATGTCAT-CCAGATGTTT---CT-GT----AG-AGTG------TGTAA--CTG--TGT-GG-T--TTT-CATCT-CCTCCAC-GTC-A-GT-TTTCA---GTTT-T-TGA-GCG-AG--T--TC--TT--T--AATGTCCCTGTGCCAGTCCTCTTC-ATGTTTTGTT-A-TGGC----TG--TTAAGAG--ATTT-CCACATTTC-TTTTCT-A-GTTG-ACTCATT--GTG-TTT---T----GTA-TATCAG--ATACAATGT--CTTCG-T---A----G--GCTGG--AT-A-AAT-TG-TATC-ACTT-AT-T-TC-A-TTTTTCTC-TTTGG-----CAA-TCTC-TC--CT-TTCTT---------TTCCTCCAAGA----C-TTGC----------A-CTAT---------TTTT----GCT-AAT-TC-----ATGGCCC--AA-A-TG-TTG-A-----------T-T-AGATG-CCAGA---CA---AGT--ATGAC-AGA-CTGGA--ATATGACACTGATT
gi|11 : TTTGTGG--CG-GCTTTTG-A-G-A-------------GCTTGCTGAAA-AC---------GTGT---TTCTCCACGCAAGCTTTA-C-ATAACAGG--TTGACGAGG--CACGT-T-CACAGTACATCT-GTACCGACGG---G-T-CTTACA-AAGGTCACACTT-G-GC-ACTGTC-AATCTGAGTTCCTGGGGCTA--CT-GG-T--ACGGAGGGGTCCATCATCAAGG-TCT-GCTTGTGGATC-----TAAT-AATGA-ATCAAATACCAAACATTGG
gi|12 : G--ATGATAAAG-TTC-CAAA---C-AATT-TA-CATAGTTCTTCTCCAACAATTCTTCCTGGG---G-TGAA-TTG-A-GGTAAAGATGGCAGCATTTTCTG-TGG-AAGCTTTTTGTATTGA-TCTACATTA-GAC-ATAAC-ACT-GAATACTT--TTGAC--ATGT--CCTTAGAG---T--CCA--AA-GC-A-AAATCTA--T-AGAA--TTG---ATTTCA-TTGT-------T-GATA-TCGGAAA---T-TTTCg
gi|13 : CATC--GGATCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAATAGC-AATGTTGGAA-------ATC-ATT---CAGCATGCATGATTC----ATATATAGTAGCCGCATGTAAAAATGTATCTCTCTAACTATAAAG-CA-TTGAAATAAAG-AGC-TGCTTAA--AGATATGTCATCAAAGT-AGAGAGAACAT-AAAAAATAAATCAT
gi|14 : ----G--GTTGG--AT-A-AAT-TGTTT-C-ATTT-AA-C-TC-A-ACTTTCTC-TTTGG-----TGA-TCTT-TC--CT-TTCTT---------TCCCTCCAAGA----A-TTAT----------A-TCAT------A---TTC----AAT-ATT-TT-----ATGACCT--AA-A-TG-TTG-A-----------TCT-GAA-G-CAACA---CA---GGG--AATGC-AGA-CCGGA--ATATGACACTGATAA-CAGTACATTT-CAC-ACCGT
gi|15 : GGAC-AGAAATTG--ATGAAAAAG-TGC-TAAA---C-AGTT-TA-CAAAGTTTTTCTCCTTCGATTCTTCCT-GG---GTTGAA-TTC-T-GGTAAAGATGGCAGAATTTTCTG-TGG-AAGCTGTTTGTATTGA-TCTACATTA-GGC-ATAAA-GCT-GAATACTT--TTGAC--ATGT--CATTAGAG---T--C
gi|16 : CGTTCTTTGTCATGAGA-GG---TA-CA--TCT--TGGGGAGAG-A---GGGGTGGATTTTCTGTCCTGGATG--TGAAC------AATTTTGTG--AG-GCTTT-G-A-GAA-------------GTTAGCTGAAA-A----------ATGT---TCTTCCGTGCAGGCCTTA-C-A---CAGAT-T-GACGAGG--CATGTAT-CACAGTACATCT-GTA
gi|17 : -TCTT-TT---T-TTCCC---------TTCGTTCAAGGACCCC-TTGCTACAAAGGAAA-TCGTGCCACAA--TTTT----GAT-AAT-TC-----ATGACCT--AA-C-TG-TTATA-----------TTT--GATG-ACA
gi|18 : tttTGAATT-----TGAA-TTTGA-AT-AAATAGC-GATGCTAGAA-------GTT-AGT---CA----GCATGATTC----ATA----GTAGT-GCA-----------------CTATCCATAAAA-CA-TTGAGAAACAG-AGC-TGCTTAAAG----ATATCTTCAACAT-AGAGATAGCAT-ACAAAATAAACAATTaatcatccaatgtcatgggctgaggtacaacatggggaatacgtgaca
gi|19 : GA-CCGGA--ATATGACACTGATTA-CAGTACATTT-CAC-ATCGTTCTTTATTATGAGAGG----TA-CA--TCC--GTGGTAGAG-G---GGGGTAGATTTTCTGTCATGAATG--TGAAC-----GATTTT
gi|2 : GATCGGACCAGAAATTG--ATGATAAAAATTCGCAAA---CCAGTTCTG-CATAGTTCTTCTCCTTC-ATTCTTCCTGGG---G-TGAA-TTC-AGGGTAAAGA-GGCAGAATTTTCTG-TGG-AAGCTTTTTGTATTGA-TCTAC-TTA-GGCAATAACAACT-GAATACTT--TCGAC--ATGT---ATTCGAG---T--CA---AA-GT-A-ACATCCA--TATGAA--TTG---ATTTCA-T-GT-------T-GATA-TCAGAGA---T-TTTCTT---GT-------TTG-ACTTCAT-CCAGATGTTT---CT-GT----AG-AGTG------TGTAATTCTG--TGT-GG-T--TTTTCAT-T-CCTCCAC-TTCAA-GC-CTTCA---ATTT-C-TGG-ACG-AG--T--TT--GT--CA-AATTTCTCTGTGCCAGTCCTCTCC-ATGTTTTGTTAA-TGGC----T---TTGAGAG--ATCT-CCACATTTC--TTTCT-A-ACTG-ACTCATT--CTG-TTT---T----GTA-CATCAG--ATACAATGT--CCTGG-T---A-------GTTGG--AT-A-AAT-TG-TTTC-GTTTAAA-C-TC-A-TTTTTCTC-TTTGA-----CAATTCCT-TT--CC-TTTTT---------TTCCTCGAAGA----C-TTGCCCCAA-----A-TT-T------AATTTTT----GAT-AAT-TC-----ATGGACT--AA-A-TGTTTT-A-----------TTT-GGATG-ACACA---CA---ATGTTCACGCAAGACCCGGAATATATGACACTGATTA-CAGTACATTT-CACAATCGTTCTTTGTCATGAGAGG----TA-CA--CCC--GGGTAAGAG-G---GGGGTGGAATTTCTGTCCTTGATGTCCCAAT-----GA--TTTTTG--TGAGCTTT-GAA-A-G-------------ATCGGCTGAAA-A----------GTGT---TCTCCCACGCAGGCCTTA-C-A---CAGGT-T-GACGAGGC-CACGTAT-CGCAGTACATCT-GTA-C-ACGG-AGG-T-CTT-CAGCAGTTCACA--T-C-GCAA---TC-A---CG---TCCTGGG--CAACCT-GG-TAAACGG--GGGTCCATCATCA-GA-TCTCGCTGGTGGCCCCTGAATAAATTATGA-AT-AAATAGC-ATTGTTGGAATATAACTGTCAATT---C----TACATGATTC----ATA----GTAGCTGCATGTAGAAATGTATCTCTCAAGCTGTAAAACCA-TTT-GATAAAGAAGCTTGCTTAa
gi|20 : TCCGAC-AGAAATTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTCTCCTTCAATTTTTTCTGGG---G-TGAA-
gi|21 : -TCAGAGA---T-TTTCTT---GT-------TC--ACTTCAT-CCATATGTTT---TT-GT----AG-AGTG------TGTAA--CTG--TGT-GG----TTTTCATC
gi|22 : tTCGGGC-AGAAATTG--CTGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTC
gi|23 : CATCA----GG-TCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAACAAC-ATTG
gi|24 : TTTTGTATTGAT-CTACATTA-GGC-ATAAC-ACT
gi|3 : AC-AGAAATTG--AT-ATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTT-TTCTCTTTCA--TCT-CCT-GG---G-TGAA-ATCGA-GGTAAAGACTGCAAAAATTTCTG-TGGCAAGATTTT-GTATTGA-TCTACATTAGGGC-ATAAC-ACTGAATTACTTAATT-ACCTACGCTGCACAACTG---T--CCAAAAA-GC-A-ACATCCA--T-TGAAATTTGTCCGTCTCAGTCGTCTTGCAGT-GATG-CGCTAGATCGT-TTTCAT---ATAGAGAACTCCAACTTT-T-TGAGTAGTTT---CT-GT----AGCAGTGC-----TGTAA--CTG--TGT-GGTT--TTTTCATCT-CCCTCTC-TCT-AGGC-ATATATACGCTT-C-TGG-ACG-AG--
gi|3 : TCAG--ATACAATGT--C-TGG-TCTTACTGTA--CCTGG--AT-ACAAT-TGTTT-C-ATTT-AA-C-TC-A-TTTTTCTC-TTTGGAAAAACGA-TCTT-TT--TTCTTCTT---------TTCT--CAGGA----C-TTGC----------AATTAT------A--TT-C----AATTAAT-TT-----ATGACCT--AA-A-TG-TTG-A-----------TCT--GATG-CCAGA---CA---AGG---ATGCAAAA-CCGG---ATATGACACTG--TA-CAGTACATTT-CA--ATCGTTTCTTGTCATGAGA-G----GA-CATTTCT--CGGGTAAAGTGGGTGGGGTCGATTTTC-------GA------AACCTTTGGAATTTCATG--T---TCTT-G---G-A-------------TTCGTCAGAAA-ACGGTACACTTGTGT---TCTCCCACGCAGGCCTTACC-A---CAGGGTT-GACGAGG--CACGTAT-CACAGTACATCT-GTACC-ACGGCCGG-T-CTTACA-C-TGTCACA--T-CGGC-A---TC-A---CG---TCCTGGG--CA--CT-GC-T--AC-----GGTCCATC-TC--GA-T-----TTATGGAatatctagtattcttctggcggtaccccatcctcgctcggtttggtctctcggtggtaagtttgcactatagatcatgatgtttgatcttaattcctgtgtacgacctttgactcgatatatatatatctcgctctagcaactcagatacaatgtctggtcttactgtacctggatacaattgtttcatttaactcatttttctctttggaaaaacgatcttttttcttcttttctcaggacttgcaattatattcaattaatttatgacctaaatgttgatctgatgccagacaaggatgcaaaaccggatatgacactgtacagtacatttcaatcgtttcttgtcatgagaggacatttctcgggtaaagtgggtggggtcgattttcgaaacctttggaatttcatgttcttggattcgtcagaaaacggtacacttgtgttctcccacgcaggccttaccacagggttgacgaggcacgtatcacagtacatctgtaccacggccggtcttacactgtcacatcggcatcacgtcctgggcactgctacggtccatctcgatttatggactgtcaagtagagagaaaaaaacatatcattt
gi|4 : acagaaattgatataaagttccaaacagtttacatagttttctctttcatctcctgggtgaaatcgaggtaaagactgcaaaaatttctgtggcaagattttgtattgatctacattagggcataacactgaattacttaattacctacgctgcacaactgtccaaaaagcaacatccattgaaatttgtccgtctcagtcgtcttgcagtgatgcgctagatcgttttcatatagagaactccaactttttgagtagtttctgtagcagtgctgtaactgtgtggttttttcatctccctctctctaggcatatatacgcttctggacgagatatctagtattcttctggcggtaccccatcctcgctcggtttggtctctcggtggtaagtttgcactatagatcatgatgtttgatcttaattcctgtgtacgacctttgactcgatatatatatatctcgctctagcaacATTGGAATGATAAAG-TTC-CAAAAAAC-AGTT-TGGCAAAA--ATTCTCCTTGAATTC--ACT-GGAAGG-TGAAATTT-A-GGTAA-GAGGGCACAATTTT-TG-CGG-AGCTTTTTTTTAT--ATTCCATCT----------AC-ACTTGAATACTT----GAC--ATGT--CTTTGGAG---T--CT---AA-ATGA-ACAATCAATT-TGAA--TGG---ATTTCA-TCCT-------T-GATG-T---AGA---A-TTTCCT---GT-------TTTGACTTCTT-CCAGTTTGTT---CT-GTTAGCGG-AG-G------TGTAA--CTGCATGT-GG-TGGTTTCCATCT-C-TCCGCCTTC-A-GC-CTTCA---GTTTTC-TTG-ACG-AG--T--TTTGGC--C--GATTTCTCTGTGGCAAGTCTCTCCCATGTTTTGTTTA-TGGC----TG--TGGAGAGGAATCTTCCATGTTTCCTTTTCTTA-ACTG-ACATATT--CTC-TTTCTAT----GTC-C--CAG--ATGCACTGT--CTTGG-TT--A----G--GTTGG--GT-A-AAAATGTTTTCCATTT-AA-T-TC-G-TTTATTTT-TGAGA-----AAA-CTTT-TT--CC-TTCTTGGTCGTATATGCCTGCAAGA-------TGT------------TTATT-----A--TTTT----GGT-GA------------ACTT--GA-A-TG-TTT-T-----------CCA-AGAAA-CAACA---CATTTGGG--AAC---AAA-TTAGA---TATCACACTGATCA-CAGTACATTTTCAC-ATCGTTCTTTGTCATGAAA-GAGGTTAGCA--TCCA-GGGGTAGAG-G---GGGGTGGATT-----TCCTGGACG---GAA-------AATTTA--A--CG-ACTTT-G-T-G-GATCCTCACATTCCATCAGTGGAGATT----------GTGTTCATCCCCCACGCAGGCCTTG-CTA---CAGT--TGGACGAGGCCCACGTGTCCGCAGTGCATCT-GTACC-ATGG-CGG-TCCTTACA-CAGGTCACA--T-C-GC-A---TCAA---GG---TCCTGGG--CAG-CTGGG-TA-ACGG--GGGTCCAT-ATT--GT-TCT-ctgtcaagtagagagaaaaaaacatatcattt
gi|5 : cagaccTAT--CATTGGAG---TACCC---AAAGCGA-ACATCCA--T-TGA---TTG----TTTC--TCGT------------A-TTAAGAA---T-GTTCTT---AT-------TC--ACTT-AT-CCAGATGTTT---CTTGT----AG------------GTA---CTG--TGTTGG-T--T---CATCTTCCTCCAC-TT--A-GC--TTC----GTTT-C-TGGCACGTAGGTT--TT--GT--C----TTTCTCT-TGC-AGTCCTCTCC-ATGTTG-GTT-A-TGGC----TG--TTGAGAG----TT-CCATATTCT-TTTTCT-A-TTCG-AACGGCT--TCG-TTT--------GTA--ATC-G--ATAC--TGT--C-TGG-TT--A----G--GCTGA--A----AAT-TGTTT-C-ATTTTAA-C-TC-A-GTTTT-TC-TTTGG-----CAACTCTTATT--CT-TTCTT---------TTCCTCCGA--------TTGC----------A-ATA-------A--TTTT----GTT-A-T-TC-----ATGAC-T--AATA-GG-TTT-A-----------TTT-TGATGACCACATGTCA---GCG--A---C-AGA---------TATG-CACTG--TA-C-GTA-ATTT-CCC-ATCGT-CTTTGTCGTGAGT-G----T--CA--TCC--GGG-T---G-A---GGGGTG-ATTTTCTGTCT--GATGT-CCTAT-----GGATTTTTTGTGCG-GCTTT-G-A-G----------------TTGGCTT-GA-A----------GTGT---TCTCCCACGC--GCTTTA---A---CGGT--T-GA-GAG-----CGTTT-CACAGTA-ATCTTGTACC--CGG-CGGGT-CTTA-A-CAGGTCACA--TGT-GC-A---TC-A---CG---TCCTGGG--CA--CT-GG-T---CGG--GGGTC--TCATC--AG-GTT-G--TGTGGATC-----TAAA-AATGATAT-AAtattcctgaaaattat
gi|6 : TCGGAC-AGAAATTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTTTTCTTCAATTCTTCC--GGAA-G-TGAA-TTC-A-GGTAAAGATGGCATAATTTTCTG-TGG-AAGCTTTTTGTATTGAT-CTACATTA-GGC-ATAAC-ACTG-AATACTT--TTGAC--ATGT--CATTAGCG---T--CC---AAAGC-A-ACATCCC--T-TGAA--TTG---ATTTCA-TCGT-------T-GATA-TCAGATA---C-TTTCTT---GT--------C--ACTTCAT-CCAGATGTTTT--CT-GTT---AG-AGTG------TGTAA--CTG--TGT-GG-T--TTT-CATCT-CCTCCAC-TTC-A-TC-CTTCA---ATTT-C-TTG-ACG-AG--T--TT--GT--TCAAATTTCTCTGTGCCAGTCCTCTCC-ATGTTTTGTT-A-TGGC----TG--TTGAGAG--ATCT-CCACATATC-TTTTCT-A-ACTG-ACTCATT--CTATTTT---T----GTA--ATCAG--ACACA--GT--CCTGGTT---A----G--GCTGG--AT-A-AAT-TG-TTTC-ATTT-AA-C-TC-A-TTCTTCTC-TTTGG-----TAA-TCTT-TT--CT-TTCTT---------ATCCTCCAAAA----C-TTGC----------A-TTAT---------TTTC----AAT-ATT-TT-----ATGACCT--AA-A-TG-TTG-A-----------TCT-GAA-G-CAACA---CA---AGG--AACGC-AGA-CTGGA--ATCTGACACTGATTA-CAGTACATCT-CAC-ATCGCTCTTTATCATGAGA-G----caactttg
gi|7 : AC-AGACATTG--ATGATAAAG-TCC-CAAA---C-AGTT-TA-CACAGTTCCTTGCCATGAATTCTTCCT-GG---GGTGAAATTT-T-GA-AAATAGGGCAGAATTTTCTG-TGG-AAGCTTTTTGTATTGAT-CTACATTA-GAC-ATAAC-ACTG-AATACCT--TTGAC--ATTT--CATTAGAG---T--CC---AAAGC-A-ACATCCA--T-CAAA--TTG---ATTT----------------GAT---CAGAGA---T-TTTCTT---GT-------TG--GCTTCAT-CCAAATGTTT---CT-GT----AG-AGTG------TGTAA--CTG--TGT-GG-T--TTT-CATCT-CCTCCGC-TTC-A-GC-TTTCA---GTTT-C-TGG-ACG-AC--T--TT--CT--C--GATTTCTCGGTGCCAGTCCTCTCC-ATGTTTTGTT-A-TGGC----TG--TTAAGAG--ATAT-GCATGTTTC-TTTTCT-A-ATTG-ACTCATT--CTG-TTT---T----GCA-CATCAG--ATACAATGT--CTTGG-T---A----G--GTTGG--AT-A-AAT-TG-TTTC-ATTT-AA-C-TC-T-TTTTTCTC-TCTTG-----CTA-TCTT-TT--CT-TTCTT---------TTCCTCCAAGA----C-TTGC----------A-TTGT---------TTTT----GAT-AAT-TC-----ATGCCCT--AA-A-TG-TTG-A-----------TTT--AATG-TCAGG---CA---AGT--ATGAC-AGA-CCGGA--ATATGACACTTAT
gi|8 : ttca--CATTAGAGCTGT--CCT--AA-AC-GCACATCCA--T-TGTA--TTGCA-ATTCTA-TCGT-------T-GATACTCAGAGA---TATTTCTTTGTAT-------TC--ACTACATTCCAAATGTTTATTCT-GTTACGAG-CGTGGTGGCATGTA---CTGA-TGT-GG-T--TTT-CATCTTCCTCCAC-TTC-A-GCTCCTCA---GTTT-CCTGT-ACC-AG--TCTTT--GTATC--AATTTCTCTGTG-CAGTCCTCTCCAATGTTTGGTT-ATTGGCTCTTTGATTTTAGAG--ATCTCCCATATTTC-TTTTTC-ATAATG-ACTCTTTTCCTG-TTT---TTTCGATAGCATCAGATATACAATGTAACC--A-T---A----GGAGCTGGCAATAA-AAT-TG-TTTC-ATTT-AAGCATCAA-GTTTTCTCTTTTGG-----C-A-TC-T-TT--CT-TTCTTTTC------TTCCTCCAAGA----CTTTGC----------A-ATA-------A--TTTTGTTGGCT-AAT-TCA----ATGACCT--AA-A-TG-TTT-A-----------TTT--GATG-ACACA---CA---TGT--CAGGC-AGA-CAGGA--ATATGACACTGATT
gi|9 : TTTTCT----TGG-----GGA-TCTT-TTATCT-TTCTT---------T-----CAATA----C-CTCT----------A-CTTT------A--CATC----AAC-AATGTCCACCAATG-CTTTTAA-ACTG-T-G-ACCGCCGTCGTTTCTCAGATG-TTATG---CAGT-ATG--AATGC-ATC-CGGGA--ACGTG-CACTCCTTGGCAGTGCATTT-CAC-ACCGCTTATTGTCAT-ATA-A----TA-CA--CACATAGGATAAAT-A---AGGACGGATTT
gi|9 : taGTGCATCT-GCACC-ACAT-TTT-C-CTTACA-AAGGCCACA--T-C-GT-G---TT-A---CG---TCCTGTG--C---TT-GATT--GCGA--GCGTCCATC--------TTT-ACTTTTGATTCA----TGAA--ATGA-AT-cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcatctgcaccacattttccttacaaaggccacatcgtgttacgtcctgtgcttgattgcgagcgtccatctttacttttgattcatgaaatgaat
Alignments
lowQualScore : 1 111 22 11 111 1 111 111111111 11111111111 111 2222 111111 1 111111 1 1 1111 1 11111111 11111111111 1 1111111 111111111 111111 3333333333333333333333333 11111 1111111111111111 11111111111 111111 111 2222222222222 11111 55555555555555555555 333333333333 111 111 2222 11 111 111 111 11 111 11 11111 33333333333333333333333 2222 2222 1 1 1 1 111 1 1
lowQualScore : 5 55 4 4 777 4 4 4 3 333 8 8 777 5 0 5 5 00 4 4 4 66 66 66 55 777 55 666 3 8 4 55 4 55 222 4 555555555 3 666 3 777 99999999999 1 4 0 111 4 1111 4 999999 666 99 4 4 55 4 8 8 4 4 88 777 4 4 4 4 66 66 66 333333 0 0 0 5 0000 66 66 0 4 5 5 5 5 66 5 66666666 99 66 1 66 6 4 88888888888 55 666 4 5 5 4 8 4 4 4 4 3 0000000 6 3 44 3 999999999 222222 2222222222222222222222222 7777 3 1 3 11111 44 3 3 3 3 8888888888888888 3 3 666 22222222222 7 3 0 44 1 4 4 4 444444 5 66 222 1 99999 1 333 0 8888888888888 1 66 22222 5 44444444444444444444 0 111111111111 000 888 000 1111 33 3 5 1 5 5 88 5 5 5 77 777 5 555 5 000 000 77 33 5 5 333 77 1 00 55 4 77777 88 5 5 6 66666666666666666666666 1111 1111 6 3 0 1 0 0 3 0 0 333 3 3
lowQualScore : . .. . . ... . . . . ... . . ... . . . . .. . . . .. .. .. .. ... .. ... . . . .. . .. ... . ......... . ... . ... ........... . . . ... . .... . ...... ... .. . . .. . . . . . .. ... . . . . .. .. .. ...... . . . . .... .. .. . . . . . . .. . ........ .. .. . .. . . ........... .. ... . . . . . . . . . . ....... . . .. . ......... ...... ......................... .... . . . ..... .. . . . . ................ . . ... ........... . . . .. . . . . ...... . .. ... . ..... . ... . ............. . .. ..... . .................... . ............ ... ... ... .... .. . . . . . .. . . . .. ... . ... . ... ... .. .. . . ... .. . .. .. . ..... .. . . . ....................... .... .... . . . . . . . . . ... . .
lowQualScore : 0 55 0 0 000 0 0 0 3 999 9 9 555 0 4 0 0 11 4 4 4 44 99 99 55 000 55 777 3 9 4 55 0 55 555 0 333333333 6 444 6 000 66666666666 1 0 7 000 0 0000 0 555555 333 55 0 0 55 5 9 9 4 4 11 888 4 4 4 4 11 99 99 666666 0 1 0 0 6666 99 99 0 2 0 0 0 0 99 0 55555555 55 11 8 11 4 4 33333333333 55 333 0 5 7 0 0 0 0 0 0 6 6666666 7 3 66 3 222222222 111111 3333333333333333333333333 1111 3 6 3 77777 66 3 3 3 3 2222222222222222 5 3 444 44444444444 3 3 2 66 2 4 4 4 666666 0 99 111 4 88888 4 999 1 0000000000000 7 11 44444 7 00000000000000000000 4 111111111111 000 666 000 7777 66 9 7 4 0 7 77 7 7 7 99 333 7 777 7 000 000 99 66 7 7 777 99 9 66 33 4 55555 66 0 0 7 00000000000000000000000 2222 2222 5 2 8 2 0 0 2 0 0 000 3 3
consensus : NGATCGGAC-AGAAATTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTCTCCTTCAATTCTTCCT-GG---G-TGAA-TTC-A-GGTAAAGATGGCAGAATTTTCTG-TGG-AAGCTTTTTGTATTGATTCTACATTA-GGC-ATAAC-ACTGGAATACTT--TTGAC--ATGT--CATTAGAG---T--CC---AA-GC-A-ACATCCA--T-TGAA--TTG---ATTTCA-TCGT-------T-GATA-TCAGAGA---T-TTTCTT---GT-------TC--ACTTCAT-CCAGATGTTT---CT-GT----AG-AGTG------TGTAA--CTG--TGT-GG-T--TTTTCATCT-CCTCCAC-TTC-A-GC-CTTCA---GTTT-C-TGG-ACG-AG--T--TT--GT--C--AATTTCTCTGTGCCAGTCCTCTCC-ATGTTTTGTT-A-TGGC----TG--TTGAGAG--ATCT-CCACATTTC-TTTTCT-A-ACTG-ACTCATT--CTG-TTT---T----GTA-CATCAG--ATACAATGT--CCTGG-T---A----G--GCTGG--AT-A-AAT-TGTTTTC-ATTT-AA-C-TC-A-TTTTTCTC-TTTGG-----CGA-TCTT-TT--CT-TTCTT---------TTCCTCCAAGA----C-TTGC----------A-TTAT------A--TTTC----GAT-AAT-TC-----ATGACCT--AA-A-TG-TTG-A-----------TCT-GGATG-CCACA---CA---AGG--AACGC-AGA-CCGGA--ATATGACACTGATTA-CAGTACATTT-CAC-ATCGTTCTTTGTCATGAGA-G----TA-CA--TCC--GGGGTAGAG-G---GGGGTGGATTTTCTGTCCTGGATG--CGAAC-----GAATTTNTTG--CG-GCTTT-G-A-G-G-------------GTCGGCTGAGA-A----------GTGT---TCTCCCACGCAGGCCTTA-C-A---CAGG--T-GACGAGG--CACGTAT-CGCAGTACATCT-GTACC-ACGG-CGG-T-CTTACA-CAGGTCACA--T-C-GC-A---TC-A---CG---TCCTGGG--CA--CT-GG-T--ACGG--GGGTCCATCATC--GG-TCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAATAGC-AATGTTGGAA-------GTC-ATT---CA---TGCATGATTC----ATA----GTAGCCGCATGTAAAAATGTATCTCTCTAACTATAAAG-CA-TTGAGATAAAG-AGC-TGCTTAAAGAGATATGTCATCAAAGT-AGAGAGAACAT-AAAAAATAAATCATT
Reference ( family-3770 ) : NGATCGGAC-AGAAATTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTCTCCTTCAATTCTTCCT-GG---G-TGAA-TTC-A-GGTAAAGATGGCAGAATTTTCTG-TGG-AAGCTTTTTGTATTGATTCTACATTA-GGC-ATAAC-ACTGGAATACTT--TTGAC--ATGT--CATTAGAG---T--CC---AA-GC-A-ACATCCA--T-TGAA--TTG---ATTTCA-TCGT-------T-GATA-TCAGAGA---T-TTTCTT---GT-------TC--ACTTCAT-CCAGATGTTT---CT-GT----AG-AGTG------TGTAA--CTG--TGT-GG-T--TTTTCATCT-CCTCCAC-TTC-A-GC-CTTCA---GTTT-C-TGG-ACG-AG--T--TT--GT--C--AATTTCTCTGTGCCAGTCCTCTCC-ATGTTTTGTT-A-TGGC----TG--TTGAGAG--ATCT-CCACATTTC-TTTTCT-A-ACTG-ACTCATT--CTG-TTT---T----GTA-CATCAG--ATACAATGT--CCTGG-T---A----G--GCTGG--AT-A-AAT-TGTTTTC-ATTT-AA-C-TC-A-TTTTTCTC-TTTGG-----CGA-TCTT-TT--CT-TTCTT---------TTCCTCCAAGA----C-TTGC----------A-TTAT------A--TTTC----GAT-AAT-TC-----ATGACCT--AA-A-TG-TTG-A-----------TCT-GGATG-CCACA---CA---AGG--AACGC-AGA-CCGGA--ATATGACACTGATTA-CAGTACATTT-CAC-ATCGTTCTTTGTCATGAGA-G----TA-CA--TCC--GGGGTAGAG-G---GGGGTGGATTTTCTGTCCTGGATG--CGAAC-----GAATTTNTTG--CG-GCTTT-G-A-G-G-------------GTCGGCTGAGA-A----------GTGT---TCTCCCACGCAGGCCTTA-C-A---CAGG--T-GACGAGG--CACGTAT-CGCAGTACATCT-GTACC-ACGG-CGG-T-CTTACA-CAGGTCACA--T-C-GC-A---TC-A---CG---TCCTGGG--CA--CT-GG-T--ACGG--GGGTCCATCATC--GG-TCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAATAGC-AATGTTGGAA-------GTC-ATT---CA---TGCATGATTC----ATA----GTAGCCGCATGTAAAAATGTATCTCTCTAACTATAAAG-CA-TTGAGATAAAG-AGC-TGCTTAAAGAGATATGTCATCAAAGT-AGAGAGAACAT-AAAAAATAAATCATT
gi|1 : GATCGGAC-AGAAGTTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTCTCCTTCAATTCTTCCT-GG---G-TGAA-TTC-A-GGTAAAGATGGCAGAA-TTTCTGTTGG-AAGCTTTTTGTATTGATTCTACATTA-GAC-AC-AC-ACTGGAATACTT--TTGAC--ATGT--CATTAGAG---T--CC---AA-GC-A-ACATCCA--T-TCGA--TTG---ATTTCA-TCGT-------TAGATA--CAGAGA---T-TTTCTT---GT-------TC--ACTTCTT-CCA-ATTTTT---CT-GC----AG-AGTGT-----TGTAA--CTG--CGT-GT-T--TTTTCATCT-CCTCCACTTTC-A-GC-TTTTA---GTTT-C-TGG-ACG-AG--T--TT--GT--C--AATTTCTCTGTGCCAGTCCTCTCC-ATGTTTT-TT-A-TGGC----TG--TTGAGAG--ATCT-CCA-ATTTC-TTTTCT-A-ACTGCACTCATT--CTG-TTT---T----GTA-CATCAG--ATACAATGT--CCTGG-T---A----G--GTTGG--AT---AAT-TGTTTTC-ATTT-AA-C-TC-ATTTTTTCTC-TTTGG-----CGA-TCTT-TT--CT-TTCCT---------TTCCTCCAAGA----CTTTGC----------A-TTAT------A--TTTC----AAT-ATT-TT-----ATGACCT--AG-A-TG-TTG-A-----------TCT-GAAAG-CAACA---CA---AGG--AATGC-AGA-CCGGA--ATA-GACACTGACTA-CAGTACA-TT-CAC-ATCGTTCTTTGTCATGAGA-G----TA-CA--TCC--AGGGTAGAG-G---GGATTGAGTTTTCTGTCTTGGATG--CGTAC-----AAATTTGTTG--CT-GCTTT-G-ACGCG-------------GCCAGCTGAGA-A----------ATGC---TCTCCCATGCAGGCCTTA-C-A---CAGG--T-GACGAGG--CACGTAT-CACAGTACATCT-GTACC-ACGG-CGG-T-CTTACA-CAGGTCACA--T-C-GC-AT--TC-A---CG---TCT--GG--CA--CT-GG-T--ACGG--GGGTCCATCATC--GA-TCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAATAGC-AATGTTGGAA-------ATC-ATTCAGCA---TGCATGATTCATATATA----GTAGCCGCATGTAAAAATGTATCTCTCTAACTATAAAG-CATTTGAAATAAAG-AGC-TGCTTAAAGAGATATGTCATCAAAGTAAGAGAGAACATAAAAAAATAAATCATT
gi|10 : tCA--T-TGAA--CTG---ATTTCA-TCGT-------T-GATA-TCAGACA---T-TTTCTT---GT-------TC--ATGTCAT-CCAGATGTTT---CT-GT----AG-AGTG------TGTAA--CTG--TGT-GG-T--TTT-CATCT-CCTCCAC-GTC-A-GT-TTTCA---GTTT-T-TGA-GCG-AG--T--TC--TT--T--AATGTCCCTGTGCCAGTCCTCTTC-ATGTTTTGTT-A-TGGC----TG--TTAAGAG--ATTT-CCACATTTC-TTTTCT-A-GTTG-ACTCATT--GTG-TTT---T----GTA-TATCAG--ATACAATGT--CTTCG-T---A----G--GCTGG--AT-A-AAT-TG-TATC-ACTT-AT-T-TC-A-TTTTTCTC-TTTGG-----CAA-TCTC-TC--CT-TTCTT---------TTCCTCCAAGA----C-TTGC----------A-CTAT---------TTTT----GCT-AAT-TC-----ATGGCCC--AA-A-TG-TTG-A-----------T-T-AGATG-CCAGA---CA---AGT--ATGAC-AGA-CTGGA--ATATGACACTGATT
gi|11 : TTTGTGG--CG-GCTTTTG-A-G-A-------------GCTTGCTGAAA-AC---------GTGT---TTCTCCACGCAAGCTTTA-C-ATAACAGG--TTGACGAGG--CACGT-T-CACAGTACATCT-GTACCGACGG---G-T-CTTACA-AAGGTCACACTT-G-GC-ACTGTC-AATCTGAGTTCCTGGGGCTA--CT-GG-T--ACGGAGGGGTCCATCATCAAGG-TCT-GCTTGTGGATC-----TAAT-AATGA-ATCAAATACCAAACATTGG
gi|12 : G--ATGATAAAG-TTC-CAAA---C-AATT-TA-CATAGTTCTTCTCCAACAATTCTTCCTGGG---G-TGAA-TTG-A-GGTAAAGATGGCAGCATTTTCTG-TGG-AAGCTTTTTGTATTGA-TCTACATTA-GAC-ATAAC-ACT-GAATACTT--TTGAC--ATGT--CCTTAGAG---T--CCA--AA-GC-A-AAATCTA--T-AGAA--TTG---ATTTCA-TTGT-------T-GATA-TCGGAAA---T-TTTCg
gi|13 : CATC--GGATCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAATAGC-AATGTTGGAA-------ATC-ATT---CAGCATGCATGATTC----ATATATAGTAGCCGCATGTAAAAATGTATCTCTCTAACTATAAAG-CA-TTGAAATAAAG-AGC-TGCTTAA--AGATATGTCATCAAAGT-AGAGAGAACAT-AAAAAATAAATCAT
gi|14 : ----G--GTTGG--AT-A-AAT-TGTTT-C-ATTT-AA-C-TC-A-ACTTTCTC-TTTGG-----TGA-TCTT-TC--CT-TTCTT---------TCCCTCCAAGA----A-TTAT----------A-TCAT------A---TTC----AAT-ATT-TT-----ATGACCT--AA-A-TG-TTG-A-----------TCT-GAA-G-CAACA---CA---GGG--AATGC-AGA-CCGGA--ATATGACACTGATAA-CAGTACATTT-CAC-ACCGT
gi|15 : GGAC-AGAAATTG--ATGAAAAAG-TGC-TAAA---C-AGTT-TA-CAAAGTTTTTCTCCTTCGATTCTTCCT-GG---GTTGAA-TTC-T-GGTAAAGATGGCAGAATTTTCTG-TGG-AAGCTGTTTGTATTGA-TCTACATTA-GGC-ATAAA-GCT-GAATACTT--TTGAC--ATGT--CATTAGAG---T--C
gi|16 : CGTTCTTTGTCATGAGA-GG---TA-CA--TCT--TGGGGAGAG-A---GGGGTGGATTTTCTGTCCTGGATG--TGAAC------AATTTTGTG--AG-GCTTT-G-A-GAA-------------GTTAGCTGAAA-A----------ATGT---TCTTCCGTGCAGGCCTTA-C-A---CAGAT-T-GACGAGG--CATGTAT-CACAGTACATCT-GTA
gi|17 : -TCTT-TT---T-TTCCC---------TTCGTTCAAGGACCCC-TTGCTACAAAGGAAA-TCGTGCCACAA--TTTT----GAT-AAT-TC-----ATGACCT--AA-C-TG-TTATA-----------TTT--GATG-ACA
gi|18 : tttTGAATT-----TGAA-TTTGA-AT-AAATAGC-GATGCTAGAA-------GTT-AGT---CA----GCATGATTC----ATA----GTAGT-GCA-----------------CTATCCATAAAA-CA-TTGAGAAACAG-AGC-TGCTTAAAG----ATATCTTCAACAT-AGAGATAGCAT-ACAAAATAAACAATTaatcatccaatgtcatgggctgaggtacaacatggggaatacgtgaca
gi|19 : GA-CCGGA--ATATGACACTGATTA-CAGTACATTT-CAC-ATCGTTCTTTATTATGAGAGG----TA-CA--TCC--GTGGTAGAG-G---GGGGTAGATTTTCTGTCATGAATG--TGAAC-----GATTTT
gi|2 : GATCGGACCAGAAATTG--ATGATAAAAATTCGCAAA---CCAGTTCTG-CATAGTTCTTCTCCTTC-ATTCTTCCTGGG---G-TGAA-TTC-AGGGTAAAGA-GGCAGAATTTTCTG-TGG-AAGCTTTTTGTATTGA-TCTAC-TTA-GGCAATAACAACT-GAATACTT--TCGAC--ATGT---ATTCGAG---T--CA---AA-GT-A-ACATCCA--TATGAA--TTG---ATTTCA-T-GT-------T-GATA-TCAGAGA---T-TTTCTT---GT-------TTG-ACTTCAT-CCAGATGTTT---CT-GT----AG-AGTG------TGTAATTCTG--TGT-GG-T--TTTTCAT-T-CCTCCAC-TTCAA-GC-CTTCA---ATTT-C-TGG-ACG-AG--T--TT--GT--CA-AATTTCTCTGTGCCAGTCCTCTCC-ATGTTTTGTTAA-TGGC----T---TTGAGAG--ATCT-CCACATTTC--TTTCT-A-ACTG-ACTCATT--CTG-TTT---T----GTA-CATCAG--ATACAATGT--CCTGG-T---A-------GTTGG--AT-A-AAT-TG-TTTC-GTTTAAA-C-TC-A-TTTTTCTC-TTTGA-----CAATTCCT-TT--CC-TTTTT---------TTCCTCGAAGA----C-TTGCCCCAA-----A-TT-T------AATTTTT----GAT-AAT-TC-----ATGGACT--AA-A-TGTTTT-A-----------TTT-GGATG-ACACA---CA---ATGTTCACGCAAGACCCGGAATATATGACACTGATTA-CAGTACATTT-CACAATCGTTCTTTGTCATGAGAGG----TA-CA--CCC--GGGTAAGAG-G---GGGGTGGAATTTCTGTCCTTGATGTCCCAAT-----GA--TTTTTG--TGAGCTTT-GAA-A-G-------------ATCGGCTGAAA-A----------GTGT---TCTCCCACGCAGGCCTTA-C-A---CAGGT-T-GACGAGGC-CACGTAT-CGCAGTACATCT-GTA-C-ACGG-AGG-T-CTT-CAGCAGTTCACA--T-C-GCAA---TC-A---CG---TCCTGGG--CAACCT-GG-TAAACGG--GGGTCCATCATCA-GA-TCTCGCTGGTGGCCCCTGAATAAATTATGA-AT-AAATAGC-ATTGTTGGAATATAACTGTCAATT---C----TACATGATTC----ATA----GTAGCTGCATGTAGAAATGTATCTCTCAAGCTGTAAAACCA-TTT-GATAAAGAAGCTTGCTTAa
gi|20 : TCCGAC-AGAAATTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTCTCCTTCAATTTTTTCTGGG---G-TGAA-
gi|21 : -TCAGAGA---T-TTTCTT---GT-------TC--ACTTCAT-CCATATGTTT---TT-GT----AG-AGTG------TGTAA--CTG--TGT-GG----TTTTCATC
gi|22 : tTCGGGC-AGAAATTG--CTGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTC
gi|23 : CATCA----GG-TCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAACAAC-ATTG
gi|24 : TTTTGTATTGAT-CTACATTA-GGC-ATAAC-ACT
gi|3 : AC-AGAAATTG--AT-ATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTT-TTCTCTTTCA--TCT-CCT-GG---G-TGAA-ATCGA-GGTAAAGACTGCAAAAATTTCTG-TGGCAAGATTTT-GTATTGA-TCTACATTAGGGC-ATAAC-ACTGAATTACTTAATT-ACCTACGCTGCACAACTG---T--CCAAAAA-GC-A-ACATCCA--T-TGAAATTTGTCCGTCTCAGTCGTCTTGCAGT-GATG-CGCTAGATCGT-TTTCAT---ATAGAGAACTCCAACTTT-T-TGAGTAGTTT---CT-GT----AGCAGTGC-----TGTAA--CTG--TGT-GGTT--TTTTCATCT-CCCTCTC-TCT-AGGC-ATATATACGCTT-C-TGG-ACG-AG--
gi|3 : TCAG--ATACAATGT--C-TGG-TCTTACTGTA--CCTGG--AT-ACAAT-TGTTT-C-ATTT-AA-C-TC-A-TTTTTCTC-TTTGGAAAAACGA-TCTT-TT--TTCTTCTT---------TTCT--CAGGA----C-TTGC----------AATTAT------A--TT-C----AATTAAT-TT-----ATGACCT--AA-A-TG-TTG-A-----------TCT--GATG-CCAGA---CA---AGG---ATGCAAAA-CCGG---ATATGACACTG--TA-CAGTACATTT-CA--ATCGTTTCTTGTCATGAGA-G----GA-CATTTCT--CGGGTAAAGTGGGTGGGGTCGATTTTC-------GA------AACCTTTGGAATTTCATG--T---TCTT-G---G-A-------------TTCGTCAGAAA-ACGGTACACTTGTGT---TCTCCCACGCAGGCCTTACC-A---CAGGGTT-GACGAGG--CACGTAT-CACAGTACATCT-GTACC-ACGGCCGG-T-CTTACA-C-TGTCACA--T-CGGC-A---TC-A---CG---TCCTGGG--CA--CT-GC-T--AC-----GGTCCATC-TC--GA-T-----TTATGGAatatctagtattcttctggcggtaccccatcctcgctcggtttggtctctcggtggtaagtttgcactatagatcatgatgtttgatcttaattcctgtgtacgacctttgactcgatatatatatatctcgctctagcaactcagatacaatgtctggtcttactgtacctggatacaattgtttcatttaactcatttttctctttggaaaaacgatcttttttcttcttttctcaggacttgcaattatattcaattaatttatgacctaaatgttgatctgatgccagacaaggatgcaaaaccggatatgacactgtacagtacatttcaatcgtttcttgtcatgagaggacatttctcgggtaaagtgggtggggtcgattttcgaaacctttggaatttcatgttcttggattcgtcagaaaacggtacacttgtgttctcccacgcaggccttaccacagggttgacgaggcacgtatcacagtacatctgtaccacggccggtcttacactgtcacatcggcatcacgtcctgggcactgctacggtccatctcgatttatggactgtcaagtagagagaaaaaaacatatcattt
gi|4 : acagaaattgatataaagttccaaacagtttacatagttttctctttcatctcctgggtgaaatcgaggtaaagactgcaaaaatttctgtggcaagattttgtattgatctacattagggcataacactgaattacttaattacctacgctgcacaactgtccaaaaagcaacatccattgaaatttgtccgtctcagtcgtcttgcagtgatgcgctagatcgttttcatatagagaactccaactttttgagtagtttctgtagcagtgctgtaactgtgtggttttttcatctccctctctctaggcatatatacgcttctggacgagatatctagtattcttctggcggtaccccatcctcgctcggtttggtctctcggtggtaagtttgcactatagatcatgatgtttgatcttaattcctgtgtacgacctttgactcgatatatatatatctcgctctagcaacATTGGAATGATAAAG-TTC-CAAAAAAC-AGTT-TGGCAAAA--ATTCTCCTTGAATTC--ACT-GGAAGG-TGAAATTT-A-GGTAA-GAGGGCACAATTTT-TG-CGG-AGCTTTTTTTTAT--ATTCCATCT----------AC-ACTTGAATACTT----GAC--ATGT--CTTTGGAG---T--CT---AA-ATGA-ACAATCAATT-TGAA--TGG---ATTTCA-TCCT-------T-GATG-T---AGA---A-TTTCCT---GT-------TTTGACTTCTT-CCAGTTTGTT---CT-GTTAGCGG-AG-G------TGTAA--CTGCATGT-GG-TGGTTTCCATCT-C-TCCGCCTTC-A-GC-CTTCA---GTTTTC-TTG-ACG-AG--T--TTTGGC--C--GATTTCTCTGTGGCAAGTCTCTCCCATGTTTTGTTTA-TGGC----TG--TGGAGAGGAATCTTCCATGTTTCCTTTTCTTA-ACTG-ACATATT--CTC-TTTCTAT----GTC-C--CAG--ATGCACTGT--CTTGG-TT--A----G--GTTGG--GT-A-AAAATGTTTTCCATTT-AA-T-TC-G-TTTATTTT-TGAGA-----AAA-CTTT-TT--CC-TTCTTGGTCGTATATGCCTGCAAGA-------TGT------------TTATT-----A--TTTT----GGT-GA------------ACTT--GA-A-TG-TTT-T-----------CCA-AGAAA-CAACA---CATTTGGG--AAC---AAA-TTAGA---TATCACACTGATCA-CAGTACATTTTCAC-ATCGTTCTTTGTCATGAAA-GAGGTTAGCA--TCCA-GGGGTAGAG-G---GGGGTGGATT-----TCCTGGACG---GAA-------AATTTA--A--CG-ACTTT-G-T-G-GATCCTCACATTCCATCAGTGGAGATT----------GTGTTCATCCCCCACGCAGGCCTTG-CTA---CAGT--TGGACGAGGCCCACGTGTCCGCAGTGCATCT-GTACC-ATGG-CGG-TCCTTACA-CAGGTCACA--T-C-GC-A---TCAA---GG---TCCTGGG--CAG-CTGGG-TA-ACGG--GGGTCCAT-ATT--GT-TCT-ctgtcaagtagagagaaaaaaacatatcattt
gi|5 : cagaccTAT--CATTGGAG---TACCC---AAAGCGA-ACATCCA--T-TGA---TTG----TTTC--TCGT------------A-TTAAGAA---T-GTTCTT---AT-------TC--ACTT-AT-CCAGATGTTT---CTTGT----AG------------GTA---CTG--TGTTGG-T--T---CATCTTCCTCCAC-TT--A-GC--TTC----GTTT-C-TGGCACGTAGGTT--TT--GT--C----TTTCTCT-TGC-AGTCCTCTCC-ATGTTG-GTT-A-TGGC----TG--TTGAGAG----TT-CCATATTCT-TTTTCT-A-TTCG-AACGGCT--TCG-TTT--------GTA--ATC-G--ATAC--TGT--C-TGG-TT--A----G--GCTGA--A----AAT-TGTTT-C-ATTTTAA-C-TC-A-GTTTT-TC-TTTGG-----CAACTCTTATT--CT-TTCTT---------TTCCTCCGA--------TTGC----------A-ATA-------A--TTTT----GTT-A-T-TC-----ATGAC-T--AATA-GG-TTT-A-----------TTT-TGATGACCACATGTCA---GCG--A---C-AGA---------TATG-CACTG--TA-C-GTA-ATTT-CCC-ATCGT-CTTTGTCGTGAGT-G----T--CA--TCC--GGG-T---G-A---GGGGTG-ATTTTCTGTCT--GATGT-CCTAT-----GGATTTTTTGTGCG-GCTTT-G-A-G----------------TTGGCTT-GA-A----------GTGT---TCTCCCACGC--GCTTTA---A---CGGT--T-GA-GAG-----CGTTT-CACAGTA-ATCTTGTACC--CGG-CGGGT-CTTA-A-CAGGTCACA--TGT-GC-A---TC-A---CG---TCCTGGG--CA--CT-GG-T---CGG--GGGTC--TCATC--AG-GTT-G--TGTGGATC-----TAAA-AATGATAT-AAtattcctgaaaattat
gi|6 : TCGGAC-AGAAATTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTTTTCTTCAATTCTTCC--GGAA-G-TGAA-TTC-A-GGTAAAGATGGCATAATTTTCTG-TGG-AAGCTTTTTGTATTGAT-CTACATTA-GGC-ATAAC-ACTG-AATACTT--TTGAC--ATGT--CATTAGCG---T--CC---AAAGC-A-ACATCCC--T-TGAA--TTG---ATTTCA-TCGT-------T-GATA-TCAGATA---C-TTTCTT---GT--------C--ACTTCAT-CCAGATGTTTT--CT-GTT---AG-AGTG------TGTAA--CTG--TGT-GG-T--TTT-CATCT-CCTCCAC-TTC-A-TC-CTTCA---ATTT-C-TTG-ACG-AG--T--TT--GT--TCAAATTTCTCTGTGCCAGTCCTCTCC-ATGTTTTGTT-A-TGGC----TG--TTGAGAG--ATCT-CCACATATC-TTTTCT-A-ACTG-ACTCATT--CTATTTT---T----GTA--ATCAG--ACACA--GT--CCTGGTT---A----G--GCTGG--AT-A-AAT-TG-TTTC-ATTT-AA-C-TC-A-TTCTTCTC-TTTGG-----TAA-TCTT-TT--CT-TTCTT---------ATCCTCCAAAA----C-TTGC----------A-TTAT---------TTTC----AAT-ATT-TT-----ATGACCT--AA-A-TG-TTG-A-----------TCT-GAA-G-CAACA---CA---AGG--AACGC-AGA-CTGGA--ATCTGACACTGATTA-CAGTACATCT-CAC-ATCGCTCTTTATCATGAGA-G----caactttg
gi|7 : AC-AGACATTG--ATGATAAAG-TCC-CAAA---C-AGTT-TA-CACAGTTCCTTGCCATGAATTCTTCCT-GG---GGTGAAATTT-T-GA-AAATAGGGCAGAATTTTCTG-TGG-AAGCTTTTTGTATTGAT-CTACATTA-GAC-ATAAC-ACTG-AATACCT--TTGAC--ATTT--CATTAGAG---T--CC---AAAGC-A-ACATCCA--T-CAAA--TTG---ATTT----------------GAT---CAGAGA---T-TTTCTT---GT-------TG--GCTTCAT-CCAAATGTTT---CT-GT----AG-AGTG------TGTAA--CTG--TGT-GG-T--TTT-CATCT-CCTCCGC-TTC-A-GC-TTTCA---GTTT-C-TGG-ACG-AC--T--TT--CT--C--GATTTCTCGGTGCCAGTCCTCTCC-ATGTTTTGTT-A-TGGC----TG--TTAAGAG--ATAT-GCATGTTTC-TTTTCT-A-ATTG-ACTCATT--CTG-TTT---T----GCA-CATCAG--ATACAATGT--CTTGG-T---A----G--GTTGG--AT-A-AAT-TG-TTTC-ATTT-AA-C-TC-T-TTTTTCTC-TCTTG-----CTA-TCTT-TT--CT-TTCTT---------TTCCTCCAAGA----C-TTGC----------A-TTGT---------TTTT----GAT-AAT-TC-----ATGCCCT--AA-A-TG-TTG-A-----------TTT--AATG-TCAGG---CA---AGT--ATGAC-AGA-CCGGA--ATATGACACTTAT
gi|8 : ttca--CATTAGAGCTGT--CCT--AA-AC-GCACATCCA--T-TGTA--TTGCA-ATTCTA-TCGT-------T-GATACTCAGAGA---TATTTCTTTGTAT-------TC--ACTACATTCCAAATGTTTATTCT-GTTACGAG-CGTGGTGGCATGTA---CTGA-TGT-GG-T--TTT-CATCTTCCTCCAC-TTC-A-GCTCCTCA---GTTT-CCTGT-ACC-AG--TCTTT--GTATC--AATTTCTCTGTG-CAGTCCTCTCCAATGTTTGGTT-ATTGGCTCTTTGATTTTAGAG--ATCTCCCATATTTC-TTTTTC-ATAATG-ACTCTTTTCCTG-TTT---TTTCGATAGCATCAGATATACAATGTAACC--A-T---A----GGAGCTGGCAATAA-AAT-TG-TTTC-ATTT-AAGCATCAA-GTTTTCTCTTTTGG-----C-A-TC-T-TT--CT-TTCTTTTC------TTCCTCCAAGA----CTTTGC----------A-ATA-------A--TTTTGTTGGCT-AAT-TCA----ATGACCT--AA-A-TG-TTT-A-----------TTT--GATG-ACACA---CA---TGT--CAGGC-AGA-CAGGA--ATATGACACTGATT
gi|9 : TTTTCT----TGG-----GGA-TCTT-TTATCT-TTCTT---------T-----CAATA----C-CTCT----------A-CTTT------A--CATC----AAC-AATGTCCACCAATG-CTTTTAA-ACTG-T-G-ACCGCCGTCGTTTCTCAGATG-TTATG---CAGT-ATG--AATGC-ATC-CGGGA--ACGTG-CACTCCTTGGCAGTGCATTT-CAC-ACCGCTTATTGTCAT-ATA-A----TA-CA--CACATAGGATAAAT-A---AGGACGGATTT
gi|9 : taGTGCATCT-GCACC-ACAT-TTT-C-CTTACA-AAGGCCACA--T-C-GT-G---TT-A---CG---TCCTGTG--C---TT-GATT--GCGA--GCGTCCATC--------TTT-ACTTTTGATTCA----TGAA--ATGA-AT-cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcatctgcaccacattttccttacaaaggccacatcgtgttacgtcctgtgcttgattgcgagcgtccatctttacttttgattcatgaaatgaat
blockSeqs : C GA A G AAA C C G G AAG T A AG T . C TT G A A GA AA CT TG CTG AC AAA A G C AT A AT TCC G CTTGCAGT C TCG A TGT AGAGAACTCCA A T ATT T TAGC C GTGGCA ATT CA T T GG T T C A G TC TAC T C C T GT CT TG TCAA C A T TCTT AT GA T C C T T . TC T TTTCG GC AT A AA T T CTTACTGTA CA AC A T T C A G A A . T AAAAACG T A AT C GGTCGTATA ACCCC TACAAAGGAAATCGTGCCACAA GTTG T A G CACCA TT T C T T CCGCCGTCGTTTCTCA T A TGT TTTGGGAAC A C AT A G T A GAGGT G TT ATA G TGGGT T CTG AACCTTTGG A GT TGCG T TGGATCCTCACATTCCA ACGGTACACTT TCA CC TAA GTT CC A C A T G CC G C G CT CG A CTG A ATC AGT GC AC G T AAA AG A AA GA C CTGAA TT T C A TATAACTGTCAATTCT . TATA C T A C . A A T AG . .
blockSeqs : . . . . . . . . G AA G A GA T . . T . . . TG . . . . . A A G . . . . CA . T . . . . TTTG A . T . TACG . C A A . . . T T . . . T . . . . . . . . ATCA A T . . . . C C . . . . . . CTAT T . A . C . AGGA . AA . T T . T . . . . . CA C . . . TTC CT CCCAAATTTAAT . . T . A . . . . . TCTG T . . ATGTTCAC A . . A . . . GG . . AG G A T ATG TCCCAATG T TG TGA . AGAAG AC . CT . TT C A . A . . A . . . . GT . . . . . . G . . AA . A A G . A A . . . ATCATTCAGCAT . . T T T . . A . . A . .
blockSeqs : . . . . . . . . G . . . A C . . T . . . G . . . . . T A . . . . . . . T . . . . TTG A . . . T . . A . . . . T . . . . C . . . . . . . . CAA . . . . . . . T . . . . . . T C . A . T . TAG . A . T T . . . . . . . TG . . . . . C AATTATA . . A . . . . . . . TTTG T . . GTATGAAT . . . A . . . GG . . T T G T CTT TCCTATG A TT CG . AAAGA TT . C . TT . A . G . . C . . . . G . . . . . . . . . A . A . A . . T . . . GTTAGTCA . . . . G . . . . .
blockSeqs : . . . . . . . . . . . . T G . . T . . . G . . . . . . . . . . . . . . T . . . . TC T . . . . . . A . . . . C . . . . A . . . . . . . . TA . . . . . . . T . . . . . . T C . C . C . TAG . A . T T . . . . . . . CA . . . . . A ATCATA . . A . . . . . . . CCAA T . . AGTATG . . . A . . . GG . . G G G T CTG TGAACG A CA AG . AGAG A . C . TT . G . A . . C . . . . C . . . . . . . . . A . A . G . . T . . .
blockSeqs : . . . . . . . . . . . . A T . . T . . . G . . . . . . . . . . . . . . T . . . . TC A . . . . . . A . . . . . . . . . C . . . . . . . . CG . . . . . . . C . . . . . . T C . A . T . AG . A . . T . . . . . . . AA . . . . . C TTATTA . . A . . . . . . . TTTT A . . GGGAAT . . . A . . . G . . G G G . T TGAAC A TT CG . GAT A . C . TG . T . G . . T . . . . C . . . . . . . . . G . A . A . . T . . .
blockSeqs : . . . . . . . . . . . . A G . . T . . . G . . . . . . . . . . . . . . T . . . . TC A . . . . . . A . . . . . . . . . C . . . . . . . . CG . . . . . . . T . . . . . . T . . A . C . AG . A . . T . . . . . . . CA . . . . . C ACTTTA . . A . . . . . . . TCTG T . . AGGAAC . . . A . . . G . . C A A . . GAA . A T . AG A . . . T . . . A . . . . . . . C . . . . . . . . . . . A . T . . A . .
blockSeqs : . . . . . . . . . . . . T . . . T . . . G . . . . . . . . . . . . . . T . . . . TG A . . . . . . A . . . . . . . . . T . . . . . . . . C . . . . . . . T . . . . . . . . . . . . . AG . A . . . . . . . . . . TA . . . . . C ACTAT . . T . . . . . . . TTA T . . AGTATG . . . A . . . G . . G . A . . . G . . . . .
blockSeqs : . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . TC A . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . A . . . . . . . . . . CT . . . . . C AATAA . . A . . . . . . . TTT T . . TGTCAG . . . A . . . A . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . GG . . . . . C ATTAT . . A . . . . . . . TCT T . . AGGAT . . . C
blockSeqs : . . . . C . . . . . . ATTGT . . A . . . . . . . TTT . . . GCGA . . . .
blockSeqs : . . . . . . AATAA . . . . . . . . . . TTT . . . . .
blockSeqCons : T* G* T******** ****** A** C***** ATTAT******************** TTT************* TNAACG******* AGAG**************** TT** ***
originalCons : NGATCGGAC-AGAAATTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTCTCCTTCAATTCTTCCT-GG---G-TGAA-TTC-A-GGTAAAGATGGCAGAATTTTCTG-TGG-AAGCTTTTTGTATTGATTCTACATTA-GGC-ATAAC-ACTGGAATACTT--TTGAC--ATGT--CATTAGAG---T--CC---AA-GC-A-ACATCCA--T-TGAA--TTG---ATTTCA-TCGT-------T-GATA-TCAGAGA---T-TTTCTT---GT-------TC--ACTTCAT-CCAGATGTTT---CT-GT----AG-AGTG------TGTAA--CTG--TGT-GG-T--TTTTCATCT-CCTCCAC-TTC-A-GC-CTTCA---GTTT-C-TGG-ACG-AG--T--TT--GT--C--AATTTCTCTGTGCCAGTCCTCTCC-ATGTTTTGTT-A-TGGC----TG--TTGAGAG--ATCT-CCACATTTC-TTTTCT-A-ACTG-ACTCATT--CTG-TTT---T----GTA-CATCAG--ATACAATGT--CCTGG-T---A----G--GCTGG--AT-A-AAT-TGTTTTC-ATTT-AA-C-TC-A-TTTTTCTC-TTTGG-----CGA-TCTT-TT--CT-TTCTT---------TTCCTCCAAGA----C-TTGC----------A-TTAT------A--TTTC----GAT-AAT-TC-----ATGACCT--AA-A-TG-TTG-A-----------TCT-GGATG-CCACA---CA---AGG--AACGC-AGA-CCGGA--ATATGACACTGATTA-CAGTACATTT-CAC-ATCGTTCTTTGTCATGAGA-G----TA-CA--TCC--GGGGTAGAG-G---GGGGTGGATTTTCTGTCCTGGATG--CGAAC-----GAATTTNTTG--CG-GCTTT-G-A-G-G-------------GTCGGCTGAGA-A----------GTGT---TCTCCCACGCAGGCCTTA-C-A---CAGG--T-GACGAGG--CACGTAT-CGCAGTACATCT-GTACC-ACGG-CGG-T-CTTACA-CAGGTCACA--T-C-GC-A---TC-A---CG---TCCTGGG--CA--CT-GG-T--ACGG--GGGTCCATCATC--GG-TCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAATAGC-AATGTTGGAA-------GTC-ATT---CA---TGCATGATTC----ATA----GTAGCCGCATGTAAAAATGTATCTCTCTAACTATAAAG-CA-TTGAGATAAAG-AGC-TGCTTAAAGAGATATGTCATCAAAGT-AGAGAGAACAT-AAAAAATAAATCATT
finalCons : NGATCGGAC-AGAAATTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTCTCCTTCAATTCTTCCT-GG---G-TGAA-TTC-A-GGTAAAGATGGCAGAATTTTCTG-TGG-AAGCTTTTTGTATTGAT-CTACATTA-GGC-ATAAC-ACTG-AATACTT--TTGAC--ATGT--CATTAGAG---T--CC---AA-GC-A-ACATCCA--T-TGAA--TTG---ATTTCA-TCGTT--------GATA-TCAGAGA---T-TTTCTT---GT-------TC--ACTTCAT-CCAGATGTTT---CT-GT----AG-AGTG------TGTAA--CTG--TGT-GG-T--TTTTCATCT-CCTCCAC-TTC-A-GC-CTTCA---GTTT-C-TGG-ACG-AG--T--TT--GT--C--AATTTCTCTGTGCCAGTCCTCTCC-ATGTTTTGTT-A-TGGC----TG--TTGAGAG--ATCT-CCACATTTC-TTTTCT-A-ACTG-ACTCATT--CTG-TTT---T----GTA-CATCAG--ATACAATGT--CCTGG-T---A----G--GCTGG--ATA--AAT-TGTTTTC-ATTT-AA-C-TC-A-TTTTTCTC-TTTGG-----CGA-TCTT-TT--CT-TTCTT---------TTCCTCCAAGAC-----TTGCATTAT--------------------TTTC----GAT-AAT-TC-----ATGACCT--AA-A-TG-TTG-ATTT-------------GATG-CCACA---CA---AGG--AACGC-AGA-CCGGA--ATATGACACTGATTA-CAGTACATTT-CAC-ATCGTTCTTTGTCATGAGA-G----TA-CA--TCC--GGGGTAGAG-G---GGGGTGGATTTTCTGTCCTGGATGTNAACG-------AATTTNTTG--CG-GCTTT-GAGAG----------------TCGGCTGAGA-A----------GTGT---TCTCCCACGCAGGCCTTA-C-A---CAGGTT--GACGAGG--CACGTAT-CGCAGTACATCT-GTACC-ACGG-CGG-T-CTTACA-CAGGTCACA--T-C-GC-A---TC-A---CG---TCCTGGG--CA--CT-GG-T--ACGG--GGGTCCATCATC--GG-TCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAATAGC-AATGTTGGAA-------GTC-ATT---CA---TGCATGATTC----ATA----GTAGCCGCATGTAAAAATGTATCTCTCTAACTATAAAG-CA-TTGAGATAAAG-AGC-TGCTTAAAGAGATATGTCATCAAAGT-AGAGAGAACAT-AAAAAATAAATCATT
Alignments
lowQualScore : 111 111 1 111 111111111 1111111 11 1111 111111 1111 111111 1 11111 11111111 111 1 1 1111111 111111111 2222222222 1111111 111111111111 111111111 1111 11111111111 111111 111 22222222222222 11111 44444444444444444444 333333333333 111 111 11 111 111 111 11 111 11 11111 33333333333333333333333 2222 2222 1 1 1 1 111 1 1
lowQualScore : 5 55 4 4 777 4 4 4 8 333 8 4 8 777 5 0 5 5 777 4 4 4 4 4 4 5 66 66 55 777 55 666 3 8 4 55 4 55 222 4 555555555 3 666 3 777 3333333 55 1 4 0 4 777 4 4 7777 4 999999 666 99 4 0000 9 8 8 4 4 88 777 4 4 4 4 66 66 66 333333 2 5 5 0 0 5 5 22222 66 5 5 4 5 5 5 5 66 5 66666666 99 66 1 66 6 4 666 8888 55 55 4 4 4 0 0 4 8 4 7777 3 0000000 6 3 44 3 333333333 555 7777 3 3 6666666666 44 4444444 444444444444 1 3 88888 3 44 3 3 3 55 333333333 9999 3 3 666 22222222222 7 3 0 44 1 4 4 4 444444 5 66 222 1 99999 1 333 0 88888888888888 1 66 22222 5 99999999999999999999 0 111111111111 000 888 000 5 33 3 5 1 5 5 88 5 5 5 77 777 5 555 5 000 000 77 33 5 5 333 77 1 00 55 4 77777 88 5 5 6 66666666666666666666666 1111 1111 6 3 0 1 0 0 3 0 0 333 3 3
lowQualScore : . .. . . ... . . . . ... . . . ... . . . . ... . . . . . . . .. .. .. ... .. ... . . . .. . .. ... . ......... . ... . ... ....... .. . . . . ... . . .... . ...... ... .. . .... . . . . . .. ... . . . . .. .. .. ...... . . . . . . . ..... .. . . . . . . . .. . ........ .. .. . .. . . ... .... .. .. . . . . . . . . .... . ....... . . .. . ......... ... .... . . .......... .. ....... ............ . . ..... . .. . . . .. ......... .... . . ... ........... . . . .. . . . . ...... . .. ... . ..... . ... . .............. . .. ..... . .................... . ............ ... ... ... . .. . . . . . .. . . . .. ... . ... . ... ... .. .. . . ... .. . .. .. . ..... .. . . . ....................... .... .... . . . . . . . . . ... . .
lowQualScore : 0 55 0 0 000 0 0 0 9 999 9 4 9 555 0 4 0 0 888 4 4 4 4 4 4 0 99 99 55 000 55 777 3 9 4 55 0 55 555 0 333333333 6 444 6 000 0000000 00 1 0 7 0 000 0 0 0000 0 555555 333 55 0 3333 6 9 9 4 4 11 888 4 4 4 4 11 99 99 666666 5 0 0 1 0 0 0 55555 99 0 0 2 0 0 0 0 99 0 55555555 55 11 8 11 4 4 777 5555 55 55 0 0 0 6 6 0 0 0 7777 6 6666666 7 3 66 3 333333333 888 1111 3 3 2222222222 66 2222222 888888888888 6 3 33333 3 66 3 3 3 11 333333333 6666 3 3 444 44444444444 3 3 2 66 2 4 4 4 666666 0 99 111 4 88888 4 999 1 33333333333333 7 11 44444 7 99999999999999999999 4 111111111111 000 666 000 7 66 9 7 4 0 7 77 7 7 7 99 333 7 777 7 000 000 99 66 7 7 777 99 9 66 33 4 55555 66 0 0 7 00000000000000000000000 2222 2222 5 2 8 2 0 0 2 0 0 000 3 3
consensus : NGATCGGAC-AGAAATTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTCTCCTTCAATTCTTCCT-GG---G-T-GAA-TTC-A-GGTAAAGATGGCAGAATTTTCTG-TGG-AAGCTTTTT---GTATTG-A-TCTACATTA-GGC-ATAAC-ACT-GAA-TACTT--TTGAC--ATGT--CATTAGAG---T--CC---AA-GC-A-ACATCCA--T-TGAA--TTG---ATTTCA-TCGT-------T-GATA-TCAGAGA---T-TTTCTT---GT-------TC--ACTTCAT-CCAGATG-TTT---CT-G-T----AG-AGTG------TGTAA--CTG--TGT-GG-T--TTTTCATCT-CCTCCAC-TTC-A-GC-CTTCA---GTTT-C-TGG-ACG-AG--T--TT--GT--C--AATTTCTCTGTGCCAGTCCTCTCC-A-TGTTTTGTT-AT-GGCTGTT-GA-----GAG--ATCT-CC-ACATTTC-TTTTCT-A-ACTG-ACTCATT--CTG-TTT---T----GTA-CATCAGATA--CAATGT--CCTGG-T---A----GG--CTGG--ATA-AA-T-TGTTTTC-ATTT-AACTCA-T----TTTTCTCTTT-GG-----CGA-TCTT-TT--CT-TTCTT---------TTC---CTCCAAGA----C-TT-GC----------ATT--AT-------TTT----CG----A-TAAT-TC-----A-TGACCT--AA-A-TG-TTG-A---------TTT----G-ATG-CCACA---CA---AGG--AACGC-AGA-CCGGA--ATATGACACTGATTA-CAGTACATTT-CAC-ATCGTTCTTTGTCATGAGA-G----TA-CA--TCC--GGGGTAGAG-G---GGGGTGGATTTTCTGTCCTGGATGT--GA-AC-----GAATTTNTTG--CG-GCTTT-G-A-G-A------------G-TCGGCTGAGA-A----------GTGT---TCTCCCACGCAGGCCTTA-C-A---CA-GGTTGACGAGG--CACGTAT-CGCAGTACATCT-GTACC-ACGG-CGG-T-CTTACA-CAGGTCACA--T-C-GC-A---TC-A---CG---TCCTGGG--CA--CT-GG-T--ACGG--GGGTCCATCATC--GG-TCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAATAGC-AATGTTGGAA-------GTC-ATT---CA---TGCATGATTC----ATA----GTAGCCGCATGTAAAAATGTATCTCTCTAACTATAAAG-CA-TTGAGATAAAG-AGC-TGCTTAAAGAGATATGTCATCAAAGT-AGAGAGAACAT-AAAAAATAAATCATT
Reference ( family-3770 ) : NGATCGGAC-AGAAATTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTCTCCTTCAATTCTTCCT-GG---G-T-GAA-TTC-A-GGTAAAGATGGCAGAATTTTCTG-TGG-AAGCTTTTT---GTATTG-A-TCTACATTA-GGC-ATAAC-ACT-GAA-TACTT--TTGAC--ATGT--CATTAGAG---T--CC---AA-GC-A-ACATCCA--T-TGAA--TTG---ATTTCA-TCGT-------T-GATA-TCAGAGA---T-TTTCTT---GT-------TC--ACTTCAT-CCAGATG-TTT---CT-G-T----AG-AGTG------TGTAA--CTG--TGT-GG-T--TTTTCATCT-CCTCCAC-TTC-A-GC-CTTCA---GTTT-C-TGG-ACG-AG--T--TT--GT--C--AATTTCTCTGTGCCAGTCCTCTCC-A-TGTTTTGTT-AT-GGCTGTT-GA-----GAG--ATCT-CC-ACATTTC-TTTTCT-A-ACTG-ACTCATT--CTG-TTT---T----GTA-CATCAGATA--CAATGT--CCTGG-T---A----GG--CTGG--ATA-AA-T-TGTTTTC-ATTT-AACTCA-T----TTTTCTCTTT-GG-----CGA-TCTT-TT--CT-TTCTT---------TTC---CTCCAAGA----C-TT-GC----------ATT--AT-------TTT----CG----A-TAAT-TC-----A-TGACCT--AA-A-TG-TTG-A---------TTT----G-ATG-CCACA---CA---AGG--AACGC-AGA-CCGGA--ATATGACACTGATTA-CAGTACATTT-CAC-ATCGTTCTTTGTCATGAGA-G----TA-CA--TCC--GGGGTAGAG-G---GGGGTGGATTTTCTGTCCTGGATGT--NA-AC-----GAATTTNTTG--CG-GCTTT-G-A-G-A------------G-TCGGCTGAGA-A----------GTGT---TCTCCCACGCAGGCCTTA-C-A---CA-GGTTGACGAGG--CACGTAT-CGCAGTACATCT-GTACC-ACGG-CGG-T-CTTACA-CAGGTCACA--T-C-GC-A---TC-A---CG---TCCTGGG--CA--CT-GG-T--ACGG--GGGTCCATCATC--GG-TCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAATAGC-AATGTTGGAA-------GTC-ATT---CA---TGCATGATTC----ATA----GTAGCCGCATGTAAAAATGTATCTCTCTAACTATAAAG-CA-TTGAGATAAAG-AGC-TGCTTAAAGAGATATGTCATCAAAGT-AGAGAGAACAT-AAAAAATAAATCATT
gi|1 : GATCGGAC-AGAAGTTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTCTCCTTCAATTCTTCCT-GG---G-T-GAA-TTC-A-GGTAAAGATGGCAGAA-TTTCTGTTGG-AAGCTTTTT---GTATTG-ATTCTACATTA-GAC-AC-AC-ACTGGAA-TACTT--TTGAC--ATGT--CATTAGAG---T--CC---AA-GC-A-ACATCCA--T-TCGA--TTG---ATTTCA-TCGT-------TAGATA--CAGAGA---T-TTTCTT---GT-------TC--ACTTCTT-CCA-ATT-TTT---CT-G-C----AG-AGTGT-----TGTAA--CTG--CGT-GT-T--TTTTCATCT-CCTCCACTTTC-A-GC-TTTTA---GTTT-C-TGG-ACG-AG--T--TT--GT--C--AATTTCTCTGTGCCAGTCCTCTCC-A-TGTTTT-TT-AT-GGCTGTT-GA-----GAG--ATCT-CC-A-ATTTC-TTTTCT-A-ACTGCACTCATT--CTG-TTT---T----GTA-CATCAGATA--CAATGT--CCTGG-T---A----GG--TTGG--AT--AA-T-TGTTTTC-ATTT-AACTCATT----TTTTCTCTTT-GG-----CGA-TCTT-TT--CT-TTCCT---------TTC---CTCCAAGA----CTTT-GC----------ATT--ATA------TTT----CA----A-TATT-TT-----A-TGACCT--AG-A-TG-TTG-A---------TCT----GAAAG-CAACA---CA---AGG--AATGC-AGA-CCGGA--ATA-GACACTGACTA-CAGTACA-TT-CAC-ATCGTTCTTTGTCATGAGA-G----TA-CA--TCC--AGGGTAGAG-G---GGATTGAGTTTTCTGTCTTGGATGC--GT-AC-----AAATTTGTTG--CT-GCTTT-G-ACGCG------------G-CCAGCTGAGA-A----------ATGC---TCTCCCATGCAGGCCTTA-C-A---CA-GG-TGACGAGG--CACGTAT-CACAGTACATCT-GTACC-ACGG-CGG-T-CTTACA-CAGGTCACA--T-C-GC-AT--TC-A---CG---TCT--GG--CA--CT-GG-T--ACGG--GGGTCCATCATC--GA-TCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAATAGC-AATGTTGGAA-------ATC-ATTCAGCA---TGCATGATTCATATATA----GTAGCCGCATGTAAAAATGTATCTCTCTAACTATAAAG-CATTTGAAATAAAG-AGC-TGCTTAAAGAGATATGTCATCAAAGTAAGAGAGAACATAAAAAAATAAATCATT
gi|10 : tCA--T-TGAA--CTG---ATTTCA-TCGT-------T-GATA-TCAGACA---T-TTTCTT---GT-------TC--ATGTCAT-CCAGATG-TTT---CT-G-T----AG-AGTG------TGTAA--CTG--TGT-GG-T--TTT-CATCT-CCTCCAC-GTC-A-GT-TTTCA---GTTT-T-TGA-GCG-AG--T--TC--TT--T--AATGTCCCTGTGCCAGTCCTCTTC-A-TGTTTTGTT-AT-GGCTGTT-AA-----GAG--ATTT-CC-ACATTTC-TTTTCT-A-GTTG-ACTCATT--GTG-TTT---T----GTA-TATCAGATA--CAATGT--CTTCG-T---A----GG--CTGG--ATA-AA-T-TG-TATC-ACTT-ATTTCA-T----TTTTCTCTTT-GG-----CAA-TCTC-TC--CT-TTCTT---------TTC---CTCCAAGA----C-TT-GC----------ACT--AT-------TTT----TG----C-TAAT-TC-----A-TGGCCC--AA-A-TG-TTG-A---------TTA----G-ATG-CCAGA---CA---AGT--ATGAC-AGA-CTGGA--ATATGACACTGATT
gi|11 : TTTGTGG--CG-GCTTTTG-A-G-A------------G-CTTGCTGAAA-AC---------GTGT---TTCTCCACGCAAGCTTTA-C-ATAACA-GGTTGACGAGG--CACGT-T-CACAGTACATCT-GTACCGACGG---G-T-CTTACA-AAGGTCACACTT-G-GC-ACTGTC-AATCTGAGTTCCTGGGGCTA--CT-GG-T--ACGGAGGGGTCCATCATCAAGG-TCT-GCTTGTGGATC-----TAAT-AATGA-ATCAAATACCAAACATTGG
gi|12 : G--ATGATAAAG-TTC-CAAA---C-AATT-TA-CATAGTTCTTCTCCAACAATTCTTCCT-GG---GGT-GAA-TTG-A-GGTAAAGATGGCAGCATTTTCTG-TGG-AAGCTTTTT---GTATTG-A-TCTACATTA-GAC-ATAAC-ACT-GAA-TACTT--TTGAC--ATGT--CCTTAGAG---T--CCA--AA-GC-A-AAATCTA--T-AGAA--TTG---ATTTCA-TTGT-------T-GATA-TCGGAAA---T-TTTCg
gi|13 : CATC--GGATCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAATAGC-AATGTTGGAA-------ATC-ATT---CAGCATGCATGATTC----ATATATAGTAGCCGCATGTAAAAATGTATCTCTCTAACTATAAAG-CA-TTGAAATAAAG-AGC-TGCTTAA--AGATATGTCATCAAAGT-AGAGAGAACAT-AAAAAATAAATCAT
gi|14 : ----GG--TTGG--ATA-AA-T-TGTTT-C-ATTT-AACTCA-A----CTTTCTCTTT-GG-----TGA-TCTT-TC--CT-TTCTT---------TCC---CTCCAAGA----A-TT-AT----------ATC--AT-------ATT----CA----A-TATT-TT-----A-TGACCT--AA-A-TG-TTG-A---------TCT----G-AAG-CAACA---CA---GGG--AATGC-AGA-CCGGA--ATATGACACTGATAA-CAGTACATTT-CAC-ACCGT
gi|15 : GGAC-AGAAATTG--ATGAAAAAG-TGC-TAAA---C-AGTT-TA-CAAAGTTTTTCTCCTTCGATTCTTCCT-GG---G-TTGAA-TTC-T-GGTAAAGATGGCAGAATTTTCTG-TGG-AAGCTGTTT---GTATTG-A-TCTACATTA-GGC-ATAAA-GCT-GAA-TACTT--TTGAC--ATGT--CATTAGAG---T--C
gi|16 : CGTTCTTTGTCATGAGA-GG---TA-CA--TCT--TGGGGAGAG-A---GGGGTGGATTTTCTGTCCTGGATGT--GA-AC------AATTTTGTG--AG-GCTTT-G-A-GAA------------G-TTAGCTGAAA-A----------ATGT---TCTTCCGTGCAGGCCTTA-C-A---CA-GATTGACGAGG--CATGTAT-CACAGTACATCT-GTA
gi|17 : -TCTT-TT---T-TTCCC---------TTC---GTTCAAGGACCCC-TT-GCTACAAAGGAAATC--GTGCCACAATTT----TG----A-TAAT-TC-----A-TGACCT--AA-C-TG-TTATA---------TTT----G-ATG-ACA
gi|18 : tttTGAATT-----TGAA-TTTGA-AT-AAATAGC-GATGCTAGAA-------GTT-AGT---CA----GCATGATTC----ATA----GTAGT-GCA-----------------CTATCCATAAAA-CA-TTGAGAAACAG-AGC-TGCTTAAAG----ATATCTTCAACAT-AGAGATAGCAT-ACAAAATAAACAATTaatcatccaatgtcatgggctgaggtacaacatggggaatacgtgaca
gi|19 : GA-CCGGA--ATATGACACTGATTA-CAGTACATTT-CAC-ATCGTTCTTTATTATGAGAGG----TA-CA--TCC--GTGGTAGAG-G---GGGGTAGATTTTCTGTCATGAATGT--GA-AC-----GATTTT
gi|2 : GATCGGACCAGAAATTG--ATGATAAAAATTCGCAAA---CCAGTTCTG-CATAGTTCTTCTCCTTC-ATTCTTCCTGGG---G-T-GAA-TTC-AGGGTAAAGA-GGCAGAATTTTCTG-TGG-AAGCTTTTT---GTATTG-A-TCTAC-TTA-GGCAATAACAACT-GAA-TACTT--TCGAC--ATGT---ATTCGAG---T--CA---AA-GT-A-ACATCCA--TATGAA--TTG---ATTTCA-T-GT-------T-GATA-TCAGAGA---T-TTTCTT---GT-------TTG-ACTTCAT-CCAGATG-TTT---CT-G-T----AG-AGTG------TGTAATTCTG--TGT-GG-T--TTTTCAT-T-CCTCCAC-TTCAA-GC-CTTCA---ATTT-C-TGG-ACG-AG--T--TT--GT--CA-AATTTCTCTGTGCCAGTCCTCTCC-A-TGTTTTGTTAAT-GGCT-TT-GA-----GAG--ATCT-CC-ACATTTC--TTTCT-A-ACTG-ACTCATT--CTG-TTT---T----GTA-CATCAGATA--CAATGT--CCTGG-T---A-----G--TTGG--ATA-AA-T-TG-TTTC-GTTTAAACTCA-T----TTTTCTCTTT-GA-----CAATTCCT-TT--CC-TTTTT---------TTC---CTCGAAGA----C-TT-GCCCCAA-----ATTTAAT-------TTT----TG----A-TAAT-TC-----A-TGGACT--AA-A-TGTTTT-A---------TTTG---G-ATG-ACACA---CA---ATGTTCACGCAAGACCCGGAATATATGACACTGATTA-CAGTACATTT-CACAATCGTTCTTTGTCATGAGAGG----TA-CA--CCC--GGGTAAGAG-G---GGGGTGGAATTTCTGTCCTTGATGTCCCA-AT-----GA--TTTTTG--TGAGCTTT-G-A-A-A------------GATCGGCTGAAA-A----------GTGT---TCTCCCACGCAGGCCTTA-C-A---CA-GGTTGACGAGGC-CACGTAT-CGCAGTACATCT-GTA-C-ACGG-AGG-T-CTT-CAGCAGTTCACA--T-C-GCAA---TC-A---CG---TCCTGGG--CAACCT-GG-TAAACGG--GGGTCCATCATCA-GA-TCTCGCTGGTGGCCCCTGAATAAATTATGA-AT-AAATAGC-ATTGTTGGAATATAACTGTCAATT---C----TACATGATTC----ATA----GTAGCTGCATGTAGAAATGTATCTCTCAAGCTGTAAAACCA-TTT-GATAAAGAAGCTTGCTTAa
gi|20 : TCCGAC-AGAAATTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTCTCCTTCAATTTTTTCTGGG---G-T-GAA-
gi|21 : -TCAGAGA---T-TTTCTT---GT-------TC--ACTTCAT-CCATATG-TTT---TT-G-T----AG-AGTG------TGTAA--CTG--TGT-GG----TTTTCATC
gi|22 : tTCGGGC-AGAAATTG--CTGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTC
gi|23 : CATCA----GG-TCT-GCTTGTGGATC-----TAAA-TATGA-AT-AAACAAC-ATTG
gi|24 : TTTT---GTATTG-A-TCTACATTA-GGC-ATAAC-ACT-
gi|3 : AC-AGAAATTG--AT-ATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTT-TTCTCTTTCA--TCT-CCT-GG---G-T-GAA-ATCGA-GGTAAAGACTGCAAAAATTTCTG-TGGCAAGATTTT----GTATTG-A-TCTACATTAGGGC-ATAAC-ACT-GAATTACTTAATT-ACCTACGCTGCACAACTG---T--CCAAAAA-GC-A-ACATCCA--T-TGAAATTTGTCCGTCTCAGTCGTCTTGCAGT-GATG-CGCTAGATCGT-TTTCAT---ATAGAGAACTCCAACTTT-T-TGAGTAG-TTT---CT-G-T----AGCAGTGC-----TGTAA--CTG--TGT-GGTT--TTTTCATCT-CCCTCTC-TCT-AGGC-ATATATACGCTT-C-TGG-ACG-AG--
gi|3 : TCAGATA--CAATGT--C-TGG-TCTTACTGTAC--CTGG--ATACAA-T-TGTTT-C-ATTT-AACTCA-T----TTTTCTCTTT-GGAAAAACGA-TCTT-TT--TTCTTCTT---------TTC-----TCAGGA----C-TT-GCA---------ATT--AT-------ATT----CA----ATTAAT-TT-----A-TGACCT--AA-A-TG-TTG-A---------TCT----G-ATG-CCAGA---CA---AGG---ATGCAAAA-CCGG---ATATGACACTG--TA-CAGTACATTT-CA--ATCGTTTCTTGTCATGAGA-G----GA-CATTTCT--CGGGTAAAGTGGGTGGGGTCGATTTTC-------GA------A-ACCTTTGGAATTTCATG--T---TCTT-G---G-A------------T-TCGTCAGAAA-ACGGTACACTTGTGT---TCTCCCACGCAGGCCTTACC-A---CAGGGTTGACGAGG--CACGTAT-CACAGTACATCT-GTACC-ACGGCCGG-T-CTTACA-C-TGTCACA--T-CGGC-A---TC-A---CG---TCCTGGG--CA--CT-GC-T--AC-----GGTCCATC-TC--GA-T-----TTATGGAatatctagtattcttctggcggtaccccatcctcgctcggtttggtctctcggtggtaagtttgcactatagatcatgatgtttgatcttaattcctgtgtacgacctttgactcgatatatatatatctcgctctagcaactcagatacaatgtctggtcttactgtacctggatacaattgtttcatttaactcatttttctctttggaaaaacgatcttttttcttcttttctcaggacttgcaattatattcaattaatttatgacctaaatgttgatctgatgccagacaaggatgcaaaaccggatatgacactgtacagtacatttcaatcgtttcttgtcatgagaggacatttctcgggtaaagtgggtggggtcgattttcgaaacctttggaatttcatgttcttggattcgtcagaaaacggtacacttgtgttctcccacgcaggccttaccacagggttgacgaggcacgtatcacagtacatctgtaccacggccggtcttacactgtcacatcggcatcacgtcctgggcactgctacggtccatctcgatttatggactgtcaagtagagagaaaaaaacatatcattt
gi|4 : acagaaattgatataaagttccaaacagtttacatagttttctctttcatctcctgggtgaaatcgaggtaaagactgcaaaaatttctgtggcaagattttgtattgatctacattagggcataacactgaattacttaattacctacgctgcacaactgtccaaaaagcaacatccattgaaatttgtccgtctcagtcgtcttgcagtgatgcgctagatcgttttcatatagagaactccaactttttgagtagtttctgtagcagtgctgtaactgtgtggttttttcatctccctctctctaggcatatatacgcttctggacgagatatctagtattcttctggcggtaccccatcctcgctcggtttggtctctcggtggtaagtttgcactatagatcatgatgtttgatcttaattcctgtgtacgacctttgactcgatatatatatatctcgctctagcaacATTGGAATGATAAAG-TTC-CAAAAAAC-AGTT-TGGCAAAA--ATTCTCCTTGAATTC--ACT-GGAAGG-T-GAAATTT-A-GGTAA-GAGGGCACAATTTT-TG-CGG-A-GCTTTTTTTTATATTCCA-TCTACACT--------------T-GAA-TACTT----GAC--ATGT--CTTTGGAG---T--CT---AA-ATGA-ACAATCAATT-TGAA--TGG---ATTTCA-TCCT-------T-GATG-T---AGA---A-TTTCCT---GT-------TTTGACTTCTT-CCAGTTT-GTT---CT-G-TTAGCGG-AG-G------TGTAA--CTGCATGT-GG-TGGTTTCCATCT-C-TCCGCCTTC-A-GC-CTTCA---GTTTTC-TTG-ACG-AG--T--TTTGGC--C--GATTTCTCTGTGGCAAGTCTCTCCCA-TGTTTTGTTTAT-GGCTGTG-GA-----GAGGAATCTTCC-ATGTTTCCTTTTCTTA-ACTG-ACATATT--CTC-TTTCTAT----GTC-C--CAGATG--CACTGT--CTTGG-TT--A----GG--TTGG--GTA-AA-AATGTTTTCCATTT-AATTCG-T----TTATTTTTGA-GA-----AAA-CTTT-TT--CC-TTCTTGGTCGTATATGC---CTGCAAGA----T-GT-TT----------ATT--AT-------TTT-----G----G-TGA-------------ACTT--GA-A-TG-TT------------TTCCAA-G-AAA-CAACA---CATTTGGG--AAC---AAA-TTAGA---TATCACACTGATCA-CAGTACATTTTCAC-ATCGTTCTTTGTCATGAAA-GAGGTTAGCA--TCCA-GGGGTAGAG-G---GGGGTGGATT-----TCCTGGACG---GA-A-------AATTTA--A--CG-ACTTT-GTG-G-ATCCTCACATTCCA-TCAGTGGAGATT----------GTGTTCATCCCCCACGCAGGCCTTG-CTA---CA-GTTGGACGAGGCCCACGTGTCCGCAGTGCATCT-GTACC-ATGG-CGG-TCCTTACA-CAGGTCACA--T-C-GC-A---TCAA---GG---TCCTGGG--CAG-CTGGG-TA-ACGG--GGGTCCAT-ATT--GT-TCT-ctgtcaagtagagagaaaaaaacatatcattt
gi|5 : cagaccTAT--CATTGGAG---TACCC---AAAGCGA-ACATCCA--T-TGA---TTG----TTTC--TCGT------------A-TTAAGAA---T-GTTCTT---AT-------TC--ACTT-AT-CCAGATG-TTT---CTTG-T----AG------------GTA---CTG--TGTTGG-T--T---CATCTTCCTCCAC-TT--A-GC--TTC----GTTT-C-TGGCACGTAGGTT--TT--GT--C----TTTCTCT-TGC-AGTCCTCTCC-A-TGTTG-GTT-AT-GGCTGTT-GA-----GAG----TT-CC-ATATTCT-TTTTCT-A-TTCG-AACGGCT--TCG-TTT--------GTA--ATC-GATA--C--TGT--C-TGG-TT--A----GG--CTGA--A---AA-T-TGTTT-C-ATTTTAACTCA-G----TTTT-TCTTT-GG-----CAACTCTTATT--CT-TTCTT---------TTC---CTCCGA--------TT-GC----------AAT--AA-------TTT----TG----T-TA-T-TC-----A-TGAC-T--AATA-GG-TTT-A---------TTTT---G-ATGACCACATGTCA---GCG--A---C-AGA---------TATG-CACTG--TA-C-GTA-ATTT-CCC-ATCGT-CTTTGTCGTGAGT-G----T--CA--TCC--GGG-T---G-A---GGGGTG-ATTTTCTGTCT--GATGT--CCTAT-----GGATTTTTTGTGCG-GCTTT-G-A-G----------------TTGGCTT-GA-A----------GTGT---TCTCCCACGC--GCTTTA---A---C--GGTTGA-GAG-----CGTTT-CACAGTA-ATCTTGTACC--CGG-CGGGT-CTTA-A-CAGGTCACA--TGT-GC-A---TC-A---CG---TCCTGGG--CA--CT-GG-T---CGG--GGGTC--TCATC--AG-GTT-G--TGTGGATC-----TAAA-AATGATAT-AAtattcctgaaaattat
gi|6 : TCGGAC-AGAAATTG--ATGATAAAG-TTC-CAAA---C-AGTT-TA-CATAGTTCTTTTTCTTCAATTCTTCC--GGAA-G-T-GAA-TTC-A-GGTAAAGATGGCATAATTTTCTG-TGG-AAGCTTTTT---GTATTG-A-TCTACATTA-GGC-ATAAC-ACT-GAA-TACTT--TTGAC--ATGT--CATTAGCG---T--CC---AAAGC-A-ACATCCC--T-TGAA--TTG---ATTTCA-TCGT-------T-GATA-TCAGATA---C-TTTCTT---G--------TC--ACTTCAT-CCAGATGTTTT---CT-GTT----AG-AGTG------TGTAA--CTG--TGT-GG----TTTTCATCT-CCTCCAC-TTC-A-TC-CTTCA---ATTT-C-TTG-ACG-AG--T--TT--GT--TCAAATTTCTCTGTGCCAGTCCTCTCC-A-TGTTTTGTT-AT-GGCTGTT-GA-----GAG--ATCT-CC-ACATATC-TTTTCT-A-ACTG-ACTCATT--CTATTTT---T----GTA--ATCAGACA--CA--GT--CCTGGTT---A----GG--CTGG--ATA-AA-T-TG-TTTC-ATTT-AACTCA-T----TCTTCTCTTT-GG-----TAA-TCTT-TT--CT-TTCTT---------ATC---CTCCAAAA----C-TT-GC----------ATT--AT-------TTT----CA----A-TATT-TT-----A-TGACCT--AA-A-TG-TTG-A---------TCT----G-AAG-CAACA---CA---AGG--AACGC-AGA-CTGGA--ATCTGACACTGATTA-CAGTACATCT-CAC-ATCGCTCTTTATCATGAGA-G----caactttg
gi|7 : AC-AGACATTG--ATGATAAAG-TCC-CAAA---C-AGTT-TA-CACAGTTCCTTGCCATGAATTCTTCCT-GG---GGT-GAAATTT-T-GA-AAATAGGGCAGAATTTTCTG-TGG-AAGCTTTTT---GTATTG-A-TCTACATTA-GAC-ATAAC-ACT-GAA-TACCT--TTGAC--ATTT--CATTAGAG---T--CC---AAAGC-A-ACATCCA--T-CAAA--TTG---ATTT----------------GAT---CAGAGA---T-TTTCTT---GT-------TG--GCTTCAT-CCAAATG-TTT---CT-G-T----AG-AGTG------TGTAA--CTG--TGT-GG-T--TTT-CATCT-CCTCCGC-TTC-A-GC-TTTCA---GTTT-C-TGG-ACG-AC--T--TT--CT--C--GATTTCTCGGTGCCAGTCCTCTCC-A-TGTTTTGTT-AT-GGCTGTT-AA-----GAG--ATAT-GC-ATGTTTC-TTTTCT-A-ATTG-ACTCATT--CTG-TTT---T----GCA-CATCAGATA--CAATGT--CTTGG-T---A----GG--TTGG--ATA-AA-T-TG-TTTC-ATTT-AACTCT-T----TTTTCTCTCT-TG-----CTA-TCTT-TT--CT-TTCTT---------TTC---CTCCAAGA----C-TT-GC----------ATT--GT-------TTT----TG----A-TAAT-TC-----A-TGCCCT--AA-A-TG-TTG-A---------TTT----A-ATG-TCAGG---CA---AGT--ATGAC-AGA-CCGGA--ATATGACACTTAT
gi|8 : ttca--CATTAGAGCTGT--CCT--AA-AC-GCACATCCA--T-TGTA--TTGCA-ATTCTA-TCGT-------T-GATACTCAGAGA---TATTTCTTTGTAT-------TC--ACTACATTCCAAATG-TTTATTCT-G-TTACGAG-CGTGGTGGCATGTA---CTGA-TGT-GG-T--TTT-CATCTTCCTCCAC-TTC-A-GCTCCTCA---GTTT-CCTGT-ACC-AG--TCTTT--GTATC--AATTTCTCTGTGC-AGTCCTCTCC-AATGTTTGGTT-ATTGGCTCTTTGATTTTAGAG--ATCT-CCCATATTTC-TTTTTC-ATAATG-ACTCTTTTCCTG-TTT---TTTCGATAGCATCAGATATACAATGTAACC--A-T---A----GGAGCTGGCAATA-AAAT-TGTTT-C-ATTT-AAG-CA-TCAAGTTTTCTCTTTTGG-----C-A-TCTT-T---CT-TTCTT---------TTCTTCCTCCAAGA----C-TTTGC----------AAT--AA-------TTT----TGTTGGC-TAAT-TC-----AATGACCT--AA-A-TG-TTT-A---------TTT----G-ATG-ACACA---CA---TGT--CAGGC-AGA-CAGGA--ATATGACACTGATT
gi|9 : ----TTTTCT---T-GG-----GGA-TCTT-TTATCT-TTCTT---------T--------CAATA----C-CT--------------CT--AC-------TTTACATCA----A-CAATGTCCACCAA-TG-CTTTTAA-ACTG-T-G-ACCGCCGTCGTTTCTCAG-ATG-TTATG---CAGT-ATG--AATGC-ATC-CGGGA--ACGTG-CACTCCTTGGCAGTGCATTT-CAC-ACCGCTTATTGTCAT-ATA-A----TA-CA--CACATAGGATAAAT-A---AGGACGGATTT
gi|9 : taGTGCATCT-GCACC-ACAT-TTT-C-CTTACA-AAGGCCACA--T-C-GT-G---TT-A---CG---TCCTGTG--C---TT-GATT--GCGA--GCGTCCATC--------TTT-ACTTTTGATTCA----TGAA--ATGA-AT-cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgcatctgcaccacattttccttacaaaggccacatcgtgttacgtcctgtgcttgattgcgagcgtccatctttacttttgattcatgaaatgaat