lowQualScore : 111111 22222222222222222222222 11111111111111111111111 111111111111111111111111111111 1111111111111111111111 111111111111111
lowQualScore : 4 4 11 11 4 22 1 777 4 4 4 8888 33 4 44444 1 555555 1 3333 6666 4 55555555 1 2222 1 111111 55 4 99999999999999999999999 1 1 11 1 4 4 44444444 1 3333 2222 222 1 1 1 1 3 4 1 1 2222 1 222 1 1 55 1 5555555555 1 1 1 2 1 2 2 88888888888888888888888 2 2 2 4 2 11 999999999999999999999999999999 11 777777777777 22 333 2 4 11 11 3333 1 1 66666666666666666 22 5555555 777 222 1 1 77777777 55 22 222 2 22 2 333 2 2 777777 1 33333333 333 1 4444 22 55555555555555 11 1 66666666666666 3333333333333 1 1 1111111111111111111111 1 22222 22222222 3333333333 11 1 111 33333333 44444444444444 1 44444 22 33333 2 1 2 1 1 444 1 44444444 33333 44 111 2 111111111 3 1 22222222 11111111 1 1 77777777777777 666666666666 1 444444444 2222222222222 1 222222222 11 33 11 11 4444444444 11 22222222 000000000000000 11111111 11 1111111111111111 33333333333 111
lowQualScore : 6 0 0 22 22 0 6 11 7 000 6 0 6 0 6 0 6 5555 22 6 6 0 55555 5 6 888888 7 6 8888 6 6 1111 0 66666666 5 2222 3 5 4 555555 6 55 0 6 99999999999999999999999 6 7 5 6 22 5 0 6 0 99999999 6 5 6 5555 9999 333 3 3 3 3 7 6 2 3 0 3 7 6 3 6 4444 0 3 222 2 3 6 55 3 2222222222 4 0 5 5 4 0 5 0 0 55555555555555555555555 0 0 0 0 0 88 6 555555555555555555555555555555 2 4 2 88 999999999999 77 4 3 555 6 0 0 33 33 4 8888 5 5 77 11111111111111111 11 8888888 000 000 5 5 00000000 55 77 55 555 0 4 77 2 0 555 0 0 000000 6 3 11111111 0 555 8 3 1 3333 7 44 22222222222222 33 8 0 3 00000000000000 8 7777777777777 3 3 2222222222222222222222 5 77777 7 3 5 00000000 3 3333333333 88 0 2 555 66666666 66666666666666 7 0 8 3 55555 7 22 66666 6 3 3 6 3 5 666 0 0 0 8 8 5 88888888 8 1 4 0 6 66666 0 11 999 111 0 3 999999999 1 5 22222222 22222222 1 5 0 0 2 1 6 88888888888888 7 7 444444444444 3 2 999999999 0 8 7777777777777 99 6 3 333333333 8 77 55 11 11 7 6 1111111111 1 00 00000000 5 5 333333333333333 0 3 22222222 3 77 22 11 555 3 3 2222222222222222 3 44 3 3 3 55555555555 4 66 222 4 4 5 8 4 5
lowQualScore : . . . .. .. . . .. . ... . . . . . . . .... .. . . . ..... . . ...... . . .... . . .... . ........ . .... . . . ...... . .. . . ....................... . . . . .. . . . . ........ . . . .... .... ... . . . . . . . . . . . . . . .... . . ... . . . .. . .......... . . . . . . . . . ....................... . . . . . .. . .............................. . . . .. ............ .. . . ... . . . .. .. . .... . . .. ................. .. ....... ... ... . . ........ .. .. .. ... . . .. . . ... . . ...... . . ........ . ... . . . .... . .. .............. .. . . . .............. . ............. . . ...................... . ..... . . . ........ . .......... .. . . ... ........ .............. . . . . ..... . .. ..... . . . . . . ... . . . . . . ........ . . . . . ..... . .. ... ... . . ......... . . ........ ........ . . . . . . . .............. . . ............ . . ......... . . ............. .. . . ......... . .. .. .. .. . . .......... . .. ........ . . ............... . . ........ . .. .. .. ... . . ................ . .. . . . ........... . .. ... . . . . . .
lowQualScore : 0 0 0 00 00 0 0 00 0 000 0 0 0 0 0 0 0 0000 00 0 0 0 00000 0 0 000000 0 0 0000 0 0 0000 0 00000000 0 0000 0 0 0 000000 0 00 0 0 00000000000000000000000 0 0 0 0 00 0 0 0 0 00000000 0 0 7 0000 3333 333 3 3 3 3 3 7 3 7 0 3 3 7 3 7 7777 7 3 777 3 3 7 00 3 0000000000 0 5 0 5 0 0 0 0 0 00000000000000000000000 0 0 0 0 0 00 0 555555555555555555555555555555 5 0 5 55 000000000000 55 0 0 000 0 0 0 00 55 0 5555 5 5 00 55555555555555555 00 0000000 000 000 0 0 00000000 00 55 00 000 0 0 55 5 0 000 0 0 555555 7 3 00000000 7 333 3 3 0 0000 3 33 33333333333333 55 8 0 2 00000000000000 3 0000000000000 3 3 7777777777777777777777 0 00000 0 5 0 88888888 0 5555555555 33 7 0 333 33333333 33333333333333 3 7 3 3 33333 3 77 33333 7 7 3 7 3 0 000 0 2 8 0 0 0 00000000 0 4 6 6 2 88888 8 00 888 777 0 2 333333333 8 0 00000000 22222222 0 0 0 2 5 2 0 33333333333333 3 3 333333333333 3 5 000000000 8 0 3333333333333 22 7 3 222222222 0 00 00 00 00 8 7 0000000000 8 77 77777777 7 0 888888888888888 6 3 11111111 1 99 88 55 888 1 1 9999999999999999 3 66 6 6 6 33333333333 4 11 222 4 4 6 9 4 0
consensus : NTCATACTTAAACAAATCACTAACTTCTTTGGTATATCCCGATATGT-GAAAAAAAAAAAAATGTCGTACCCGTTCATAAAAAGATTGTAAAAATATTATAAC-TAATTACAGGCCAATTTCTTTAATTAGCATATATAGTTGGGATCGTAATGGGAAAATCGTGTTTATAATCACTTGATTAGTTACATATAAGAAAATCAAATCTTGTGCAAAAATCAG-TCAGGTTTTATTCAAGGTGACTCTACTGTACAAAAACCTTTGGACATTTCTAAGTATATTGGTAAAGCTATT-GACCAGGGTAGAGAAGTAGGGGGNGGTTTTTTTTTGTGACATAAGTAAAGCATTCGACAGGGTTTTGGCNTGCTGGATTAATNTTTAAACTATTCCGGATCCAGTCCGGTTTTTCAGGAAAGGTTCTGTCTTGACTAGAGGACTGCATGTACATGTATATACATGTATACCCAATTGAAGCAAAAGAATGATAATCAACTCTAAATCATATAAATGGGTAAGAATAAACGTTGGAGTTCCACAAGGTTCTGTATTAGGTCCTCTTTTGTTTCTTATTTTTATAAA-GACAT-TGNCCTTGACATAAAA-TGTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTTTATATATCGTCGTTG-AAAANCCACAATCTGCAAGCAATATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGGCT-GTCGAATTTAAT-CCG-T-CAAAACAGAATCCTTGATAACAAGCAAC-AAACGCGCTCAAACTACAC-ATCCAGAACTTTGTTTTCTTAANCAANTGCATCATAANAAAATTGTTGAGAGTCATAGAGCATTCTAGCGTTAACTTTTCCCAAGATGGTAGCGTTACATTTGTCCCAAAATTGGGTTATTGGTNTTCTCATTGTAAANTCTGTTCCTACGAAATCTTTCCCCAAAGCTCTTGTTGCGATTAAATATGCTANGTAAAATNANCTATNTACTAGATAGAAGAGATCATTAAAGAAANGTNTTGAATTTTATCTTGTTAT-TAGGNNTGTCCTNNAATATGCNGAAGTATAATTTTGGGACANNATTTCTG-TTGTCGANTCGTCGTCAAAAACTTGAACGGTTTAAAC--AGGAAGC---CGCTAGAATCGTATCGGTGGTTACAAAACTTACTCAAAATATTNTTAACAACTTCACGATGAACTGGNNTGGGTAGCCCCGTTGAAAACAGGNGGGAAAAAATTCNATAAAATTTATACATACTTTTTCATAAAATGTGTCCATNGNCCAAGTTCGTG-AGTATC-TAC-GCAACCTTGTTCCTC-CAAAAATAT-GCGAATCCCA--C-CGCATA-TACAAGA---GCGGACAA-CATAAA-TCTAACCAAATACAAAA-CTACGCACTACAAAAATTCATT--T-CTA----C--ATCAACTATT--TC-CT----T-GGAA-CAGT-CTCCCTGACGA-TGTA---AAAGGA------CCTCAATATCGCACCTTAAACGT-ATTTAAATGAAA-TACCA--AANCCC----CTCC-CACCGT--ACTTTCTCACAGGCTCAGNG-CAAGTT---CAGATTTTACAT-ACC--TCTA-GTATGAATTGCAGTTTACTCAATTACC-ATTTATTTTNT---AAAAACATCGTAGA-AGTCCTTTATGCGTTTG--GGCAAGATAGAA-GACACC-AAACA-CTATTTCCTAGAATGTCCTCTGTA-CGATCAACTTAGGCGAAAATA-TC-TTTCAAATCTA-GGCAAAC-AATGTTAACACNAACCTACTGC-T-CTTTGGAGACCCAAACCTATCAGTAT-CTCAAAACA---AAT-TATATTTCAATC----A----GTAC-ATAAATATAT--CAAGCAAAGTAA-GAGATTCAATTCCTGAG-TGTTATGTATTGTAATG-TAT--------------TTTTCTGTAATAGCGAC-------AA-TAAT-TTCACACGAC-C-TAC-ACACGTCATCATCAC-CCT--T-A-T----T-TA--TAT-GTTTC-GCATTT--T---TGT-ATTC-GTATTTA-TTGTA--CTC--AAAATTCCATCG-AGCTTAAAGAAGA-TTT--------AT-TATTATTA-TTATATGTTACATA--A------TAGG-A--------GACGG-ATTTACATAAGTC--TTTCG-TACTTGTTTC---TGAAT-CCTAT-TAT--------A-----A-TG-ATGTAT--T-G-TT-TG--------TT-TGT-AATAC--T---TGTTT-CAA-CGTC-AAT-AAATACA-GTTTAAAC
Reference ( gi|1 ) : ATCATATTTAA-CAAATCA-TAACTCTTTCAGTATATCCCGATATGTTGGAAAAAAGCAAATTGTC---CCCGTTCATAAAAAAAT-GTGAAAA-ATCATAACATAATTACAGGCCAATTTCTTTAATTAGCACA----GTTGGGAAGGTAATGGAAAAGT-GTGTTTATAATCACTTGATAAAT-ACATATACGAAAATCAAATTTTGTGCAAAA-TCAAATCAGGTTTTTTTCAAGGTGACTCCACTGTAAATCAACTTTTGGATATTTCTAACGA-ATTGGTAAAGCTATTTGATCAGGGTAAAGAAGTAAGGAGCG----TTTTTTGTTACATAAGTAAAGCATTCGACAGGG-TT-GGCATGCTGGATTACTTTTTAAATTATTCC------AGTCCGGTTTTTCAGGAAAAGT-ATGTCT-GGCTAGAGGACT------------ATAT-------TATCCAATAGAAGCCAAAGAGTAGTAATCAACTCTAAATCATCTAAATGGGTAA-AATAAACGCTGGAGTTC-ACAAGGTTCT-TATGAG-TCCTCTTTTGTTTCTTATCTTTATAAACGACAT-T-TCCTTGACATAAAATTGTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTTTATATATCGTTGTTGAAAAACCCACAATCTGCAAGCAA-ATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGGCTCGTCGAATTCAAT-CCG-T-CAAAACAGAATCCTTGATAATAAGCAAC-AAACGCACTCAA--TACAC-ATCCAGA--CTTG-T--CTTAAACAACTGCATCATAAAAAAAT-GTTGAGAATCATA-AGCAT-CTAG-----------------------GCGTTACATTT-TCCCAAAAT-GGGTTAT-GGT-TTCTCAT-GTAAACTCTATTC------------TC-------------TT-CGATTAAATATGCTACGTAAAATAAGTTATATACT---TAGA--A--TCATT--AGAAAAGTTTTA---TTTATCCT-TTATCTAGACCTGTCCTTGAATATGCAG-A--ATAATTTTGGGACAATATTTCTGCTTGTCAACTCA--GTCAAAAACTTTGACGGTT-AAACCCAGGAAGCGCTCGCTAGAATCGTATCCGGGGGTACAAAA--TAC---AAATATT--TAAT--CTTTACAATGAACTGGGCTGTG-AACCCC-TTGAAAACAGAAGAAAAAAAA--CCATAAAATT-ATACAT---TTT-CATAAAATG-GTCCCTCG--CAAGTTCCTG-AGTATC-TAC-GCAACCTTGTCCC-C-CAAAAATTT-GCGAATCTCA-ACACACATAACACAAGACAAGCGGACAA-CATAAA-TCTAACCAAATACAAAA-CTACGCACTACAAAAATTCATT--TACTA----C--ATCAACAATT--TC-CT----T-GGAA-CAGT-CTCCCTGATGATTGTA---AAAAAAGAA-CCCTTCAATATCACACCTTAAACGT-ATTTAAATAAAA-CATCA--AAACCC----CTCC-CACCAT--ACTTCCTCACAGGCTCAGCG-CAAGTT---CAAATTTTACAT-ACCC-TCTACGTATGAATTGCAGTTCACTCAAATACC-ATTTATTTTC----AAAAACATTGTAGATAGTCCTTTATGTGTTTG--GGCAAGATAGAAAGACACC-AA-CA-CTATTTCCTAGA-TCTCCTCTGTA-CAATCAACTTAGGCGAAAATA-TC-TTTCAA-TCTATGACAAAC-AATGTCAACACTAACCTACTGCCT-CTTTGGAGACCCAAA--TATCAGTAT-CTCAAAACA---AAT-TATATTTCAATC----A----GTACTATAACTATAT--CAAGCCAAGTAA-GAGATTCAATTCCTGAG-TGTTATGTATTGTAATGTTAT--------------TTTTCTGTAATAGCGA--------AA-TAAT-TTCATACGACAC-TAC-ACACATCATCATCAC-CCT--T-A-T----T-TA--TAT-GTTTC-GCAGTT--T---TGT-ATTT-GTATTT--TTGTA--CTC--AGAATTTCATCATAGCTTAAAGAAGA-TTT--------AT-TATTATTA-TTATATGTTACATA-CACAAATGTAGG-A--------GACAG-ATTTACATAAGTC--TTTCG-AACTTGTTTC---TGAAT-CCTAT-TAT--------A-----A-TG-ATGTAT--T-G-TT-TG--------AT-TGT-AATAC--T---TGTTT-CAA-CATC-AAT-AAATACA-GTTTAAAC
gi|3 : TCATACTTAAACAAATCACTAACTTCTTTGGTATATCCCGATATGT-GAAAAAAAAAAAAATGTCGTACCCGTTCATAAAAAGATTGTAAAAATATTATAAC-TAATTACAGGCCAATTTCTTTAATTAGCATATATAGTTGGGATCGTAATGGGAAAATCGTGTTTATAATCACTTGATTAGTTACATATAAGAAAATCAAATCTTGTGCAAAAATCAG-TCAGGTTTTATTCAAGGTGACTCTACTGTACAAAAACCTTTGGACATTTCTAAGTATATTGGTAAAGCTATT-GACCAGGATAGAGAAGTAGGGGAAG----TTTTTTGTGACATAAGTAAAGCATTCGACAGGA-TTTGGCATGTTGAATTAATATTTAAACTATTCCGGATCCAGTCCGGTTTTTCAGGAAAGGTTCTGTCTTGACTAGAGGACTGCATGTACATGTATATACATGTATACCCAATTGAAGCAAAAGAATGATAATCAACTCTAAATCATATAAATGGGTAAGAATAAACGTTGGAGTTCCACAAGGTTCTGTATTAGGTCCTCTTTTGTTTCTTAATTTTATAAA-GACAT-TGCCCTTGACATA------TAA---TATT-AAACTATTTGCAGATAA-CA-CT-ACTTTATATATCGCCGTTG-ATAATCCACAATTTGCAAGTAATATT-CTAAATAATGATCTTCAGAAAATCCACCAGTGGTCTA-AGCACTGGA-TGGTTGAATTCAAT-CCGCC-CAAACCATAATCATTAATAATAAGCAAA-AAACGCGCTCAAACTACAC-ATCCAGA--TTTATT--CTTAATCAATTGCATCAT-AAAAAAT-GTTGAGAGTCATA-AGCAT-CTAG-----------------------GCGTTACATTT-TCCCAAAAT-GGGTTAT-GGTGTTCTCAT-GTAAAATCTGTTC------------TCCCCAAAGCTCTTGTT-CGATTAAATATGCTACGTAAAATTACCTATCTACTAGATAGAAGA--TCATTAAAAAAAAGTTTTA---TTTATCTT-TTAT-TAGACATGTCCTTTAATATGCTGAA--ATAA-TTTGGGACAATATTTCTG-TTG--AACTCG--GTCAAAAACTT
gi|17 : ATCAGGGTAAAGAAGTAAGG-GCGGTTTTTTTTTGTGACATAAGTAAAACATTCGACAGGGTTT-GGCCTGCTAGATTAATTTTTAAATTgaacaaaacaaaacttataaatattcttaacctttacgatgaactgggctgggagccccttgaaaacagaagaaaaaaaattccataaaattatacatacttttcataaaatgatccacggccaagttcatgagtatctatgaaaccttgttcctccaaaaatatgcgaatcccacacacacataatacaagcggacaacataattctaaccaaatataaaactactcactacaaaaattcatttctaccagaaccatcaactatttctctttggaacagtctccctgatgatgtaaataaaaaagaaccccctcaatatcacaccttaaacgtcacttatattaaatagaaatcccctccac
gi|2 : CTTTTGTTTCTTATTTTTATAAAGGA-ATAT-GTCTTGACATAAAAATGTAAAAGCATTGAAACTATTTGCAGATGAACATCTCACTT-ATATAT--TTGTTGTGAAAACCACAATCTGCAAGCAATATTGCTAA-TAATGATCTTCAGAAAATCGAT-AGTGGTTGATAGCAATGG-CT-GTCGAATTTACTTCCG-T-CAAAACAGAATCCTTGATAA-AAGCAACCAAACGCA-TCAAACTACACGATCCAGAACTTTG-TTTCTTAAACAAGTGCAT-ATAATAAAATTGTTAA-AATCATAGAGCATTCTAGCGTTAACTTTTCCCAAGATGGTAGCGTTACATTTGTTCCAAAATTGGGTTATTGGTCTTCTCATTGTAA-CTCTGTTTCTACGAAATCTTTC-------------TTGCGATTAAATATGCTAAGTAAAATAAGTTA-ATACTAGATAGA--AGATCATT--AGAAATGTGTTGAATTTTATCTTGTTAT-TAGGATTGTCTTGAAATATGCAG-AGTATAATTT-GGGATATGATTT-----TGTCGAATAATCGTCAAAAACTTGAACGGTTTAAAC--AGGAAGC---CGCTAGAATCGTATCGGTGGTTA-AAAACTTACTCAAAATATTATTAATAACTTCACAATGAACTGGCATGGGTAACTCCGTTGAAAACAGGTAGGAAAAAA--CAATAAAATTTATACAT---TTTTCATAAAATGTGTCCATGGT-CAAGTTCGTGGAGT-TCATACAGCAACCTTGTCCTTC-CAAAAATTTTGCGAATCTCA----CAC-TA-CACAAAA--AGTGGACAAGCATAAAATCTAAC-AAATACAAAAATTATGCACTACAAAG-TTCATT--T-CTA----CCGATCAGCAATT--TT-CT----TTGGAATCAGTGCTCCCTGATGAT-GTA---AAAGGA------CTTCAATTGCA-ACCTTAAAT-C-ATTTAAATGAAA-AACCATAGAACTC----C-----ACCATCTACTATCTCA-AGGCTCAGCGGCAAGTTGCATAGATTTTACATTACCG-TCTAGGTATGAATTGC-GTCTAATCAAATACCTATTTATTTTTTCTAGAAAACATTGTAGA-AGTCCTTTATGTGTTTGATGGCAAGATAGAA-GACACC-AAACAGCTATTTC-TAGAATGTCCTCTGTATCAAGTAACTTAGGCGAAAATAATT-TTTCAA-ATTA-GGCAAAC-AATGTTAAAACTACCTTACTGGCTGCTTTGGAGACCCAAAC-TATCAGTAT-TGCAAAACA---AAT-TATATTTCAATC----A----GTAC-ATAA-TATAT---AATCAAAGTAACGAGATTCGATT-CTGCGTTGTTAT-TATTGTAATG-TAT--------------TTTTCTGTAATAGAGAC-------AA-TAATGTTCATA-GACGTATAC-A-ACA--GTCATCACTCCT--TCA-T----TGTA--TAT-GTTTCAGCATTT--T---TGTAATTTGGTATTTA-TTGTA--CTC--ATTATT---CCGTAGTT--AAGAAT--TTT--------ATGTA-TATTA-TTATATGT--------ACAA--GTAGG-A--------GAACG-ATTTAACTAAGTCT-TTTCG-AA-TTGTTTCTATTGAAT-TAT-T-TAT--------AACATTA-TG-ATGTAT--T-G-TTGTG--------ATGTGTGAATAC--CTTGTGTTTACAA-CGTCAAAT-TCATACA-GTTTAAACtt
gi|8 : TTTTGTTTCTTATTTTTATAAACGACAT-TGTCCTTGACATAAAA-TGTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTTTATATATCGTTGTTG-AAAACCCACAATCTGCAAGCAATATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAAT-GGCTCGTCGAATTTAAT-CCG-TCCAAAACAGAATCCTTGATAACAAGCAAC-AAACGCACTCAAACTACAC-ATCCaacatgcaataagagttctttataggtgggacatttta
gi|3 : ACAAAACTTAT---AAATATTCTTAAC--CTTTACGATGAACTGGGCTGGG-AGCCCC-TTGAAAACAGAAGAAAAAAAATTCCATAAAATT-ATACATACTTTT-CATAAAATG-ATCCA-CGGCCAAGTTCATG-AGTATC-TAT-GAAACCTTGTTCCTC-CAAAAATAT-GCGAATCCCACACACACATAATACAA-----GCGGACAA-CATAAT-TCTAACCAAATATAAAA-CTACTCACTACAAAAATTCATTTCTACCAGAACC--ATCAACTATTTCTC-TT----T-GGAA-CAGT-CTCCCTGATGA-TGTAAATAAAAAAGAACCCCCTCAATATCACACCTTAAACGTCACTTATATTAAA-TA--G--AAATCC----CCTC-CAC
gi|5 : tcatacttaaacaaatcactaacttctttggtatatcccgatatgtgaaaaaaaaaaaaatgtcgtacccgttcataaaaagattgtaaaaatattataactaattacaggccaatttctttaattagcatatatagttgggatcgtaatgggaaaatcgtgtttataatcacttgattagttacatataagaaaatcaaatcttgtgcaaaaatcagtcaggttttattcaaggtgactctactgtacaaaaacctttggacatttctaagtatattggtaaagctattgaccaggatagagaagtaggggaagttttttgtgacataagtaaagcattcgacaggatttggcatgttgaattaatatttaaactattccggatccagtccggtttttcaggaaaggttctgtcttgactagaggactgcatgtacatgtatatacatgtatacccaattgaagcaaaagaatgataatcaactctaaatcatataaatgggtaagaataaacgttggagttccacaaggttctgtattaggtcctcttttgtttcttaattttataaagacattgcccttgacatataatattaaactatttgcagataacactactttatatatcgccgttgataatccacaatttgcaagtaatattctaaataatgatcttcagaaaatccaccagtggtctaagcactggatggttgaattcaatccgcccaaaccataatcattaataataagcaaaaaacgcgctcaaactacacatccagatttattcttaatcaattgcatcataaaaaatgttgagagtcataagcatctaggcgttacattttcccaaaatgggttatggtgttctcatgtaaaatctgttctccccaaagctcttgttcgattaaatatgctacgtaaaattacctatctactagatagaagatcattaaaaaaaagttttatttatcttttattagacatgtcctttaatatgctgaaataatttgggacaatatttctgttgaactcggtcaaaaacttgaacaaaAGTTCCTG-AGTAA---AT-GCAACATTGTTCC-TTCTAAAATAT-ATGAATCCCA--CTCGCATA-TACAAGACA--------------------------ATATAAAA-CCACGCACTGCAAAAAGCAACT--T-CTAT---C--CTCAAATATT--TCTCTGCGGT-GGAA-CAGT-CTTCCTGACGA-TG-------------------TCAAGATTG---CTTAA---T-A-------GAAA-TACCA--ACCCCCTCTGCTCCTCCCTGT--ACTTTCTCATAGGTTCAGGA-CAAG---------TTTTA--------------------ATTGCAGTTTACTCAATTACC-ATTTATTTTG----AAA---ATCGTAG---------TATGCGT-----------ATA-CAAGACTCCAAA-CA-TTATTT
gi|26 : -CATAAA-TCTAACCAAATACAAAA-TTACGCACTACAAAAATTCAagaacatcgtctaaatctagcaaacaatattaccacggaaatacagctttctggagatccaccttatcaaaagtcgaccagttcttgtatcacacaaatcctaagttttgtgtactataatgataccagggccctgcatattatcgtaaaacgacgaggaggaaagttttacacgaccatcaccatcacccttgtatatacatgtttcaac
gi|4 : ACACCTTGAACGTGATTTAAATAAAAACATCA--AACCCC----CTCC--ACCAT--ACTTCCTCACAGGCTCACAG-CAAGTT---CAAATTTTACAT-ATTCGTCTACGTATGAATTGCAGTTCACTCAATTACC-ATTTATTTTCT---AAAAACATTGTAGATAGTCCTTTATGTGTTTGT-GGCAAGATAGAA-GACACC-AAACA-CTATTTCCTAGAATGTCCTCTGTA-CAATCAACTCAGGCGAAAATA-TC-TTTCAAATCTA--GCAAAT-AATGTCAACACTAACCTACTGC-T-CTTTGGAGACCCAAACCTATCAGTAT-CTCAAAACA---AATCTATATTTCAATC----ATGCAGTAC-ATAACTATAT--CAAGCAAAGTAA-GAGATTCAATTCCTGAG-TGTTATGTATTGTAATGTTAT--------------TTTTCTGTTATAGCGA--------AAATAAT-TTCATACGAC-C-TATTACACATCATCATCAC-TCT--T-AAT----TGTA--TAT-GTTTCAGCATTT--T---TGT-ATTT-GTATTTA-TTGTA--CTC--AAAATTCCATC---GCTTAAAGAAGA-TGT--------AT-TATTATTA-TTATATGTTACATA-----------GG-A--------GACAG-ATTTACATAAGTC--TTTCG-AACTTGTTTC---TGAAT-CCTAT-TAT--------A-----A-TG-ATGTAT--T-G-TT-TG--------TT-TGT-AATAC--T---TGTTT-CAA-CGTC-AAT-AAA
gi|6 : TGTA-CAATAAACTTTGACAAAAATA-TC-TTTCAAATCTA-----------------CACAAACCTACTGCA--CTTTGGGAATCCAAACCTATCAATAT-CTCAAAACA---AATATATATTTCAATC----A----GTAC-ATAAATATAT--AAAGCAAAGTA--------------CTAAG-TATTATGTAACATAATaatatcgtt
gi|12 : ctaattcttaaaatggtcatTGTA-TGATCAACTGAGGGGCAAATA-TC-TTT------TGGGGCAAGCAAACATTAACACAAATCGA-TG--------GGCAACCCAAACTTATCAGCATCCCCAAAACATATAAT-TATA--TCAATC----A----GTGC-ATAAATATAT---ATTCAAAGTAA-agtactaaagacttgcatttgtccttttttattgtcagtatacgcaagatgcgaaagacccatcacacgtcatcatcacccttgtataattacttatgtttctccatagcttcattatacgtacatgtaacataggagatggatttacataagtcttttgtacttgtctccgaatcctatcata
gi|5 : aatactgaatctacttagaagtcaatAGAACA-TCGTCTAAA-TCTA--GCAAAC-AATATTACCACGGAAATACAGCTT--TCTGGAGATCCA-------CCTTAT-C--AAAAG--------------TCGACC----A----GTTCT-----TGTAT--CA---CA------------CAAATCCTAAG-TTTTGTGTACTATAATGATACCAGGGCCCTGCATATTATC-GTAA-AACGACGAGGAGGAA--AGT-TTTACACGAC----------CATCACCATCAC-CCTTGT-A-T----A-TA--CAT-GTTTC-
gi|18 : agttcctgagtaaatgcaacattgttccttctaaaatatatgaatcccactcgcatatacaagacaatataaaaccacgcactgcaaaaagcaacttctatcctcaaatatttctctgcggtggaacagtcttcctgacgatgtcaagattgcttaatagaaataccaaccccctctgctcctccctgtactttctcataggttcaggacaagttttaattgcagtttactcaattaccatttattttgaaaatcgtagtatgcgtatacaagactccaaacattatttCAAAACA---AATCTATATTTCAATCTGACA----GTAC-ATAAATATATATCAAGCAAAGTAA-GAGATTCAATTCaac
gi|7 : gacacgaaatatgtaaaTCACACGACCC-ACC-ACACGTCACCATCAC-CCT--T-G-T----G-TA--TAC--TTTT-GTA-TT--TGCATGT-ATAC-GTATTTCTTTGTA--TTTTTAAAATTCCAT---AGCTTTAAGGGGA-GTT--------GT-TATCATTA-TCACATGTAACATA-----------AG-A--------GACGG-ATTTATATAATTC--TTTTG-TACTTGTTTC---CGAAT-CCTAT-CAT--------G-----C-TA-ATATCA--T-G-TT-TGTAGGTACAAG-TAT-CATACCAT---TTCTT-CAATCAAT-AAT-AAATACAGGTTTAAGC
gi|6 : C-ACACGTCATCATCAC-CCT--T-G-TATAAT-TACTTAT-GTTTC-aaaattt
gi|9 : ctaattcttaaaatggtcattgtacaataaactttgacaaaaatatctttcaaatctacacaaacctactgcactttgggaatccaaacctatcaatatctcaaaacaaatatatatttcaatcagtacataaatatataaagcaaagtactaagtattatgtaacataatagtactaaagacttgcatttgtccttttttattgtcagtatacgcaagatgcgaaagacccat--T-A-T----T-TA--TATTGTTCA-GCAATTATT---TGT-ATT--GTATTA--TTGTAAATTC--AAAATTCCA--GTAGTTTAGAGTAGA-TTTGGTTATTCAT-TATTATTA-TCAT-TGTTATATA---------TCGG-A--------GACAGGATTTACATAGATCATTTCCG-TACTTGTGTC---TGAAT-CCTGTGTAT--------A-----A-T--ATGTAT--T-G-TT-TGT-------GT-TGT-AGCAC--T---TGTG--AAA-CGTC-AAT-AAATACA-GTTtccatagcttcattatacgtacatgtaacataggagatggatttacataagtcttttgtacttgtctccgaatcctatcata
gi|21 : T-ATTA-GTATTTA-TTGTA--CTT--AAAATTTCAT-------------AG--TTT--------AT-TATTATTA-TTATATGTTAC-----------GTAGG-A--------GACAG-ATTTACATAA
gi|14 : AATTTAATCG-ACCTAAAATATGAATTT--------AT-TATGATTA-TTATA-GTTACATA------------G-A--------GACA--ATTT-CAAAAGTC--TTTT---ACTTGTT-C---TGAATTCCTAT--AT--------A-----A-TG-ATGCATAGT-G-TT-T--------------T-AATAC--T---TGTTT-CAA-CGTCTAAT-AAATACA-GTTTAA
gi|13 : aAAA-TTT--------AT-TATTATTAATTATATGTTA------ACA----TAGGCA--------GACAG-ATTGACATAAGTC--TTTCG-AACTTGTTGC---TGAAT-CC-AT-T-T--------A-----A-TG-ATG-AT--T-GCTC-TG--------TTATGT-AATAC--TA--TGTTA-CAA-AGTC-AATAAAATA-A-GTTTAAAC
gi|6 : TCA-TTATACGT-ACATG-TA---ACATAGG-A--------GATGG-ATTTACATAAGTC--TTTTG-TACTTGTCTC---CGAAT-CCTAT-CAT--------A-----caaaatagtttcat
gi|11 : ctaattcttaaaatggtcattgtacaataaactttgacaaaaatatctttcaaatctacacaaacctactgcactttgggaatccaaacctatcaatatctcaaaacaaatatatatttcaatcagtacataaatatataaagcaaagtactaagtattatgtaacataatagtactaaagacttgcatttgtccttttttattgtcagtatacgcaagatgcgaaagacccatcacacgtcatcatcacccttgtataattacttatgtttctccatagctTACATGTTCC-TATCATAACTATAGG-ACGATTTGAGACGG-ATTTATATATGTC--ATT-G-TACTTGTTTT---TGAAT-CCTAA-TGT--------A-----GTTA-ACGTAT--
gi|10 : tcacatagccccattaccattttatttcgtttatttttctgtatacttatgtttacacaAGG-A--------GACAG-ATTTACATAAGTC--GTTCG-TACTTGTTTC---TGAAT-CCTAT-TATAAATTTATA-----A-TG-ATGCAT--T-G-TT-TG--------TT-TGT-ATCAC--T---TGTTT-CAA-CGTC-AAT-AAATACA-GTTTAAACgtactctttatt
gi|22 : ccataacttataaaagaagatttaaGG-A--------GACGG-ATTTACATAAGTC--TT--G-TACTTGTTTC---TGAAT-CCTAT-TAT--------A-----T-TG-ATGTAT--T-G-TT-caaatgtgtaacaacagttttatttttatatgaaagtttttatttactcggtcagtatacgt
gi|15 : G-A--------GACGG-ATTTACATAAGTC--TT--GTACCTTGTTTC---TGAAT-CCTAT-TAT--------A-----T-TGAATGTAT--TCG-TT-catttcc
gi|16 : gaACAT-ATTAAT-TAAGTC--TTTCG-TACTTGTTTC---TGAAT-CCTAT-TAT--------A-----A-TG-ATGT-T--T-G-T-------------T-TGT-AGTAC--T---TGTTT-CAA-CTTC-AAT-AAATATA-ATTTatttcccagcaaacagtcatcgacgtcatttcgacgtcagatttaagtcgttt
gi|20 : tttAAT-CGTAT-TAT--------A-----A-TG-ATGTAT--T-G-TT-TG--------TT-TGT-AGTAC--T---TGTTT-CAA-CGAC-AAT-AAATACA-GTTTA
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): AACTAAGTATGGGTATAAAATTGGTCTTTGAAATAACTCTATAAATTTCAAATAACGGTACATAACAAAGACGTATCACACTT
Unaligned ( gi|23 ): TTTCTCTATTCCAACATTGTATCCTTTAAATGTAAATGCCAAGGTCTGTGGACAAAGCA
Unaligned ( gi|24 ): TAACCATTTTGAATACATGTGTGATTCTAACATGCATCTAAGATTTACCAAAATA
Unaligned ( gi|25 ): TTACCAATAATGAAACGTAACTTGTAAAATCGATAAACATTTTATTC
Unaligned ( gi|27 ): ACTAATTTAAGAAGGAGAGCCAGTAAATTTAAAGAACT
Unaligned ( gi|28 ): CGAAACACGGCCTTTTAAATACCACAATGACC
Alignments
lowQualScore : 11111111111111111111111 111111111111111111111111111111
lowQualScore : 1 1 2 222 1 1 2 2222 1 1 1 2 1 2 4444444 2 222222 11 1 444444444444 3333333 1 1 1 1 2 1 111 111 1 1 1 1 1 1 1 1 2222 1 111 1 1 1 4444444444 111 1 2 11 77777777777777777777777 2 11 11 1 11 888888888888888888888888888888 44444 33 3333 2 1 333 1111 333 2222 11 3333 111 1 444444444444444444444444 2 2 33 4444 2 22 1 1111 1 1 3333 1 22222222222222 1 4444444444 1 11 1 2222 1 1 1 66666666666666666666666 111 1111111 1111 22 11 222222 5555555555555 1 33333 22 22 1 22222222 111 111 1 111111111 99999999999999 1 333333333 2222222 2222222 222222 1 11 1 222 11111111 333333333333 11111111 11111111 111
lowQualScore : 5 5 0 3 4 111 5 5 0 4444 66 5 4 5 3 5 0 4 2 77 55 5 0 0 0 0 7777777 3 7 1 1 0 888888 88 5 666666666666 2222222 4 3 3 5 5 5 3 5 0 0 33 2 3 777 777 0 0 0 0 3 2 2 0 1 0 3 0 3 2 0 1111 0 444 0 0 44 3 0 0000000000 1 1 6 1 333 2 3 44 44444444444444444444444 3 44 44 4 44 88 222222222222222222222222222222 1 1 11 88 7 33333 00 1 1 8888 3 3 222 22 1 777 7 7 22 7777 7 0 1 111 0000 88 6 0000 222 2 222222222222222222222222 0 0 22 3 0 3 11 11 00 1 7 7 4444 3 88 99 6 0 3333 0 3 0 4 6666 2 3 0 33333333333333 8 8 1 5 0 8 0 0 6666666666 4 0 33 0 1111 0 0 2 0 55555555555555555555555 66 88 0 999 6 1 3333333 1 7777 0 6 00 6 11 555555 2 3333333333333 3 4 0 44444 3 2 33 2 3 33 0 0 6 99 99 1 888 1 1 6 66666666 3 1 1 6 222 6 6 000 7 1 555555555 5 5 1 77 7 77 1 2 8 44444444444444 6 222222222 8 0 8 55 3333333 3 8 2 2 3333333 6 6 77 5 111111 77 5 1 8 8 11 99 2 3 6 99 99 999 1 66 0 55 88888888 5 0 555 4 666666666666 3 3 77 4 0 3 555 2 2 2 5 33 00000000 77777 6 3 6666 3 3 44444444 55 111 4 4 8 4 4
lowQualScore : . . . . . ... . . . .... .. . . . . . . . . .. .. . . . . . ....... . . . . . ...... .. . ............ ....... . . . . . . . . . . .. . . ... ... . . . . . . . . . . . . . . . .... . ... . . .. . . .......... . . . . ... . . .. ....................... . .. .. . .. .. .............................. . . .. .. . ..... .. . . .... . . ... .. . ... . . .. .... . . . ... .... .. . .... ... . ........................ . . .. . . . .. .. .. . . . .... . .. .. . . .... . . . . .... . . . .............. . . . . . . . . .......... . . .. . .... . . . . ....................... .. .. . ... . . ....... . .... . . .. . .. ...... . ............. . . . ..... . . .. . . .. . . . .. .. . ... . . . ........ . . . . ... . . ... . . ......... . . . .. . .. . . . .............. . ......... . . . .. ....... . . . . ....... . . .. . ...... .. . . . . .. .. . . . .. .. ... . .. . .. ........ . . ... . ............ . . .. . . . ... . . . . .. ........ ..... . . .... . . ........ .. ... . . . . .
lowQualScore : 5 0 0 0 0 000 5 5 0 5555 55 0 0 5 0 5 0 0 5 00 55 5 0 7 7 7 3333333 7 3 0 0 7 555555 00 5 000000000000 5555555 0 0 0 0 0 0 0 0 0 0 55 5 2 000 555 0 0 0 0 2 5 0 0 0 0 2 0 2 5 0 5555 0 888 5 0 55 2 0 7777777777 0 0 7 0 777 0 3 77 77777777777777777777777 3 77 77 0 77 33 777777777777777777777777777777 0 0 77 33 3 33333 77 0 0 3333 3 3 777 00 0 777 3 3 00 3333 3 7 0 000 0000 33 7 0000 000 0 777777777777777777777777 7 7 00 7 7 3 77 33 77 0 3 3 7777 7 33 00 5 0 2222 0 2 0 0 2222 0 2 0 22222222222222 0 0 0 0 8 0 8 0 2222222222 0 0 88 0 2222 0 0 0 0 88888888888888888888888 22 88 8 888 0 4 6666666 0 0000 8 5 55 5 00 222222 5 8888888888888 2 0 0 00000 2 0 22 0 2 88 0 8 7 22 22 7 333 0 0 7 77777777 2 0 0 7 777 7 7 000 1 4 333333333 7 0 3 99 9 11 5 5 0 00000000000000 0 000000000 0 8 0 88 6666666 8 0 2 5 7777777 7 7 99 7 777777 99 7 4 0 0 00 22 0 2 7 22 22 444 7 77 3 11 11111111 0 1 666 4 333333333333 1 1 33 0 8 1 444 9 9 9 7 99 44444444 11111 2 1 5555 1 1 55555555 55 000 0 0 0 0 4
consensus : NTCATACTTAAACAAATCACTAACTCCTTCGGTATATCCCGATATGTTGGAAAAAAGNAAANTGTCGTACCCGTTCATAAAAAGATTGTGAAAATATCATAACATAATTACAGGCCAATTTCTTTAATTAGCACATATAGTTGGGANNGTAATGGGAAAGTCGTGTTTATAATCACTTGATNAGTTACATATANGAAAATCAAATCTTGTGCAAAAATCAGATCAGGTTTTNTTCAAGGTGACTCCACTGTANANNAACCTTTGGACATTTCTAANNATATTGGTAAAGCTATTTGATCAGGGTAAAGAAGTAAGGGGCG----TTTTTTGTGACATAAGTAAAGCATTCGACAGGG-TTTGGCATGCTGGATTAATTTTTAAATTATTCCGGATCCAGTCCGGTTTTTCAGGAAAGGTTNTGTCTTGGCTAGAGGACTGCATGTACATGTATATACATGTATACCCAATNGAAGCNAAAGAGTGGTAATCAACTCTAAATCATNTAAATGGGTAAGAATAAACGCTGGAGTTCCACAAGGTTCTGTATNAGGTCCTCTTTTGTTTCTTATTTTTATAAACGACAT-TGTCCTTGACATAAAA-T-GTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTTTATATATCGTTGTTG-AAAANCC-ACAATCTGCAAGCAATATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGNCC-GTCGAATTCAAT-CCG-T-CAAAACAGAATCCTTGATAATAAGCAAC-AAACGCACTCAAACTACAC-ATCCAGA--TTTGT-T-CTTAAACAANTGCATCATAAAAAAATTGTTGAGAGTCATA-AGCATTCTAG-----------------------GCGTTACATTT-TCCCAAAATTGGGTTATTGGT-TTCTCATTGTAAACTCTGTTC------------TC--------TCTT-TT-CGATTAAATATGCTACGTAAAATAAGTTATATACTAGATAGAA-A--TCATTA--GAAAAGTTTTA---TTTATCTT-TTAT-TAGACNTGTCCTTNAATATGCAGAA--ATAATTTTGGGACAATATTTCTG-TTGTCAACTCG--GTCAAAAACTTGAACGGTT-AAAC--AGGAAGC---CGCTAGAATCGTATC-G-GGTTACAAAA--TACTC-AAATATT-TTAAT--CTTTACGATGAACTGGGCTGGG-AACCCC-TTGAAAACAGAAGAAAAAAAA--CCATAAAATTTATACAT---TTTTCATAAAATG-GTCCATCG--CAAGTTCNT-GAGTATC-TAC-GCAACCTTGTCCCTCCAAAAA-TNTGCGAATCCCAC---CACAT-ATA---C-AAGA---GCGGACAA-CAT-AAATCTAACCAAATAC-AAAACTACGCACTACAAAAATTCATTT-CTAC------C--ATCAACNA-TT--TC-CT----TGGAA-CAGT-CTCCCTGATGAT-GT-----AAAA---GGA----CC--TCAATATCGC-ACCTTAAACGT-ATTTAAATGAAA-CACC--AAANCCC----CTCCCACC-GTACTTCCTCACAGGCTCAG-GGCAAGTT---CAAATTTTACA-TA--CC-TCTACGTATGAATTGCAGTTCACTCAANTACC-ATTTATTTTCT---AAAAACATTGTAGATAGTCCTTTATGTGTTTG--GGCAAGATAGAA-GACACCAAACA-CT--ATTT-CCTAGAATGTCCTCTGTA-CAATCAACTTAGGCGAAAAT-ATCTTTCAAATCTA-GGCAAACAATGTTAACACNAACCTACT-GC-T-CTTTGGAGACCCAAACCTATCAGTAT-CTCAAAACA---AAT-TATATTTCAATC----A----GTAC-ATAAATAT--ATCAAGCAAAGTAA-GAGATTCAATTCCTGAG-TGTTATGTATTGTAAT--TAC-A--G-C-TGTTATTTTTC---------TGT-AATA-GCGACAAT------AAT-TTCATACGAC-CTA-C-AC-AC-GTCATCATCACCCT--TA-T----T-TA--TAT-GTTTC-GCA-TT-TT--TGTA--TTNGTATTTATT-GTA--CTC--AAAATTCCATCG-AGCTTAAAGAAGA-TTT--------AT-TATT---ATT-ATTATATGTTACATA-------ATAGG-AGAC-GGATTTACATAAGTC--TTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------ATAC--T---TGTTT-CAA-CGTC-AAT-AAATACA-GTTTAAAC
Reference ( family-374 ) : NTCATACTTAAACAAATCACTAACTTCTTTGGTATATCCCGATATGT-GAAAAAAAAAAAAATGTCGTACCCGTTCATAAAAAGATTGTAAAAATATTATAAC-TAATTACAGGCCAATTTCTTTAATTAGCATATATAGTTGGGATCGTAATGGGAAAATCGTGTTTATAATCACTTGATTAGTTACATATAAGAAAATCAAATCTTGTGCAAAAATCAG-TCAGGTTTTATTCAAGGTGACTCTACTGTACAAAAACCTTTGGACATTTCTAAGTATATTGGTAAAGCTATT-GACCAGGGTAGAGAAGTAGGGGGNGGTTTTTTTTTGTGACATAAGTAAAGCATTCGACAGGGTTTTGGCNTGCTGGATTAATNTTTAAACTATTCCGGATCCAGTCCGGTTTTTCAGGAAAGGTTCTGTCTTGACTAGAGGACTGCATGTACATGTATATACATGTATACCCAATTGAAGCAAAAGAATGATAATCAACTCTAAATCATATAAATGGGTAAGAATAAACGTTGGAGTTCCACAAGGTTCTGTATTAGGTCCTCTTTTGTTTCTTATTTTTATAAA-GACAT-TGNCCTTGACATAAAA-T-GTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTTTATATATCGTCGTTG-AAAANCC-ACAATCTGCAAGCAATATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGGCT-GTCGAATTTAAT-CCG-T-CAAAACAGAATCCTTGATAACAAGCAAC-AAACGCGCTCAAACTACAC-ATCCAGAACTTTGTTTTCTTAANCAANTGCATCATAANAAAATTGTTGAGAGTCATAGAGCATTCTAGCGTTAACTTTTCCCAAGATGGTAGCGTTACATTTGTCCCAAAATTGGGTTATTGGTNTTCTCATTGTAAANTCTGTTCCTACGAAATCTTTCCCCAAAGCTCTTGTTGCGATTAAATATGCTANGTAAAATNANCTATNTACTAGATAGAAGAGATCATTAAAGAAANGTNTTGAATTTTATCTTGTTAT-TAGGNNTGTCCTNNAATATGCNGAAGTATAATTTTGGGACANNATTTCTG-TTGTCGANTCGTCGTCAAAAACTTGAACGGTTTAAAC--AGGAAGC---CGCTAGAATCGTATCGGTGGTTACAAAACTTACTCAAAATATTNTTAACAACTTCACGATGAACTGGNNTGGGTAGCCCCGTTGAAAACAGGNGGGAAAAAATTCNATAAAATTTATACATACTTTTTCATAAAATGTGTCCATNGNCCAAGTTCGT-GAGTATC-TAC-GCAACCTTGTTCCTCCAAAAA-TATGCGAATCCCAC---CGCAT-ATA---C-AAGA---GCGGACAA-CAT-AAATCTAACCAAATAC-AAAACTACGCACTACAAAAATTCATTT-CTA-------C--ATCAACTA-TT--TC-CT----TGGAA-CAGT-CTCCCTGACGAT-GT-----AAAA---GGA----CC--TCAATATCGC-ACCTTAAACGT-ATTTAAATGAAA-TACC--AAANCCC----CTCCCACC-GTACTTTCTCACAGGCTCAG-NGCAAGTT---CAGATTTTACA-TA--CC-TCTA-GTATGAATTGCAGTTTACTCAATTACC-ATTTATTTTNT---AAAAACATCGTAGA-AGTCCTTTATGCGTTTG--GGCAAGATAGAA-GACACCAAACA-CT--ATTT-CCTAGAATGTCCTCTGTA-CGATCAACTTAGGCGAAAAT-ATCTTTCAAATCTA-GGCAAACAATGTTAACACNAACCTACT-GC-T-CTTTGGAGACCCAAACCTATCAGTAT-CTCAAAACA---AAT-TATATTTCAATC----A----GTAC-ATAAATAT--ATCAAGCAAAGTAA-GAGATTCAATTCCTGAG-TGTTATGTATTGTAA--------------TGT-ATTTTTC---------TGT-AATA-GCGACAAT------AAT-TTCACACGAC-CTA-C-AC-AC-GTCATCATCACCCT--TA-T----T-TA--TAT-GTTTC-GCA-TT-TT--TGTA--TTCGTATTTATT-GTA--CTC--AAAATTCCATCG-AGCTTAAAGAAGA-TTT--------AT-TATT---ATT-ATTATATGTTACATA-------ATAGG-AGAC-GGATTTACATAAGTC--TTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------ATAC--T---TGTTT-CAA-CGTC-AAT-AAATACA-GTTTAAAC
gi|1 : TCATATTTAA-CAAATCA-TAACTCTTTCAGTATATCCCGATATGTTGGAAAAAAGCAAATTGTC---CCCGTTCATAAAAAAAT-GTGAAAA-ATCATAACATAATTACAGGCCAATTTCTTTAATTAGCACA----GTTGGGAAGGTAATGGAAAAGT-GTGTTTATAATCACTTGATAAAT-ACATATACGAAAATCAAATTTTGTGCAAAA-TCAAATCAGGTTTTTTTCAAGGTGACTCCACTGTAAATCAACTTTTGGATATTTCTAACGA-ATTGGTAAAGCTATTTGATCAGGGTAAAGAAGTAAGGAGCG----TTTTTTGTTACATAAGTAAAGCATTCGACAGGGTT--GGCATGCTGGATTACTTTTTAAATTATTCC------AGTCCGGTTTTTCAGGAAAAGT-ATGTCT-GGCTAGAGGACT------------ATAT-------TATCCAATAGAAGCCAAAGAGTAGTAATCAACTCTAAATCATCTAAATGGGTAA-AATAAACGCTGGAGTTC-ACAAGGTTCT-TATGAG-TCCTCTTTTGTTTCTTATCTTTATAAACGACAT-T-TCCTTGACATAAAA-TTGTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTTTATATATCGTTGTTG-AAAAACCCACAATCTGCAAGCAA-ATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGGCTCGTCGAATTCAAT-CCG-T-CAAAACAGAATCCTTGATAATAAGCAAC-AAACGCACTCAA--TACAC-ATCCAGA--CTTGT---CTTAAACAACTGCATCATAAAAAAAT-GTTGAGAATCATA-AGCAT-CTAG-----------------------GCGTTACATTT-TCCCAAAAT-GGGTTAT-GGT-TTCTCAT-GTAAACTCTATTC----------------------TCTT----CGATTAAATATGCTACGTAAAATAAGTTATATACT---TAGAA----TCATTA--GAAAAGTTTTA---TTTATCCT-TTATCTAGACCTGTCCTTGAATATGCAGAA---TAATTTTGGGACAATATTTCTGCTTGTCAACTCA--GTCAAAAACTTTGACGGTT-AAACCCAGGAAGCGCTCGCTAGAATCGTATCCGGGGGTACAAAA--TAC---AAATATT--TAAT--CTTTACAATGAACTGGGCTGTG-AACCCC-TTGAAAACAGAAGAAAAAAAA--CCATAAAATT-ATACAT----TTTCATAAAATG-GTCCCTCG--CAAGTTCCT-GAGTATC-TAC-GCAACCTTGTCCC-CCAAAAA-TTTGCGAATCTCAA---CACAC-ATAACAC-AAGACAAGCGGACAA-CAT-AAATCTAACCAAATAC-AAAACTACGCACTACAAAAATTCATTTACTA-------C--ATCAACAA-TT--TC-CT----TGGAA-CAGT-CTCCCTGATGATTGT-----AAAAAAAGAA----CCCTTCAATATCAC-ACCTTAAACGT-ATTTAAATAAAA-CATC--AAAACCC----CTCCCACC-ATACTTCCTCACAGGCTCAG-CGCAAGTT---CAAATTTTACA-TA--CCCTCTACGTATGAATTGCAGTTCACTCAAATACC-ATTTATTTTC----AAAAACATTGTAGATAGTCCTTTATGTGTTTG--GGCAAGATAGAAAGACACCAA-CA-CT--ATTT-CCTAGA-TCTCCTCTGTA-CAATCAACTTAGGCGAAAAT-ATCTTTCAA-TCTATGACAAACAATGTCAACACTAACCTACT-GCCT-CTTTGGAGACCCAAA--TATCAGTAT-CTCAAAACA---AAT-TATATTTCAATC----A----GTACTATAACTAT--ATCAAGCCAAGTAA-GAGATTCAATTCCTGAG-TGTTATGTATTGTAA--------------TGTTATTTTTC---------TGT-AATA-GCGA-AAT------AAT-TTCATACGACACTA-C-AC-AC-ATCATCATCACCCT--TA-T----T-TA--TAT-GTTTC-GCA-GT-TT--TGTA--TTTGTATTT-TT-GTA--CTC--AGAATTTCATCATAGCTTAAAGAAGA-TTT--------AT-TATT---ATT-ATTATATGTTACATACACAAATGTAGG-AGAC-AGATTTACATAAGTC--TTTCGAAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGA-T-TGTA--------ATAC--T---TGTTT-CAA-CATC-AAT-AAATACA-GTTTAAAC
gi|10 : aTA-------A-AGG-AGAC-AGATTTACATAAGTC--GTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--TAAATTTATA-----ATG-ATGCATTG-TT----TGT-T-TGTA--------TCAC--T---TGTTT-CAA-CGTC-AAT-AAATACA-GTTTAAAC
gi|11 : ccataacttataaaagaagattG-AGAC-GGATTTATATATGTC--ATT-GTAC-TTGTTTT---TGAAT-CCTAA-TGTAGTT--------A-----ACGTATGTACTC-TT----TAT-T-caaatgtgtaacaacagttttatttttatatgaaagtttttatttactcggtcagtatacgt
gi|12 : tcacatagccccattaccattttatttcgtttatttttctgtatacttatgtttacacatacatgttcctatcataactataggacgatttAATA-CTGAATCTACTTAGAA-GTCAATTGTA-TGATCAACTGAGGGGCAAAT-ATCTTTTGGGGC-A-AGCAAACA---TTAACACAAATCGA-T-G--------GGCAACCCAAACTTATCAGCATCCCCAAAACATATAAT-TATA--TCAATC----A----GTGC-ATAAATAT--AT-ATTCAAAGTAA-
gi|13 : AAA-TTT--------AT-TATT---ATTAATTATATGTTA-AC--------ATAGGCAGAC-AGATTGACATAAGTC--TTTCGAAC-TTGTTGC---TGAAT-CC--A-T-T---T--------A-----ATG-ATG-ATTGCTC----TGT-TATGTA--------ATAC--TA--TGTTA-CAA-AGTC-AATAAAATA-A-GTTTAAAC
gi|14 : AAATTTAATCG-ACCTAAAATATGAATTT--------AT-TATG---ATT-ATTATA-GTTACATA-----------G-AGAC-A-ATTT-CAAAAGTC--TTT--TAC-TTGTT-C---TGAATTCCT-A-T--A--T--------A-----ATG-ATGCATAG-T------GT-T-T-TA--------ATAC--T---TGTTT-CAA-CGTCTAAT-AAATACA-GTTTAAcaaaatagtttcat
gi|15 : G-AGAC-GGATTTACATAAGTC--TT--GTACCTTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----TTGAATGTATTC-GT----TAT-T-T
gi|16 : gaTAAGTC--TTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-A-----TG-TT----TGT-T-TGTA--------GTAC--T---TGTTT-CAA-CTTC-AAT-AAATATA-ATTTcccagcaaacagtcatcgacgtcatttcgacgtcagatttaagtcgttt
gi|17 : tttacatattaatATCAGGGTAAAGAAGTAAGGG-CGGTTTTTTTTTGTGACATAAGTAAAACATTCGACAGGG-TTTGGCCTGCTAGATTAATTTTTAAATT
gi|18 : CAAAACA---AATCTATATTTCAATCTGACA----GTAC-ATAAATATATATCAAGCAAAGTAA-GAGATTCAATTCtt
gi|2 : gacacgaaatatgtaaaCTTTTGTTTCTTATTTTTATAAA-GGAATATGTC-TTGACATAAAAAT-GTAAAAGCATTGAAACTATTTGCAGATGAACATCTCACTT-ATATAT--TTGTTGTGAAAACC-ACAATCTGCAAGCAATATTGCTAA-TAATGATCTTCAGAAAATCGAT-AGTGGTTGATAGCAATGG-CT-GTCGAATTTACTTCCG-T-CAAAACAGAATCCTTGATAA-AAGCAACCAAACGCA-TCAAACTACACGATCCAGAACTTTGTTT-CTTAAACAAGTGCAT-ATAATAAAATTGTTAAAA-TCATAGAGCATTCTAGCGTTAACTTTTCCCAAGATGGTAGCGTTACATTTGTTCCAAAATTGGGTTATTGGTCTTCTCATTGTAA-CTCTGTTTCTACGAAATCTTTC-------------TTGCGATTAAATATGCTAAGTAAAATAAGTTA-ATACTAGATAGAAGA--TCATTA--GAAATGTGTTGAATTTTATCTTGTTAT-TAGGATTGTCTTGAAATATGCAGA-GTATAATTT-GGGATATGATTT-----TGTCGAATAATCGTCAAAAACTTGAACGGTTTAAAC--AGGAAGC---CGCTAGAATCGTATCGGTGGTTA-AAAACTTACTCAAAATATTATTAATAACTTCACAATGAACTGGCATGGGTAACTCCGTTGAAAACAGGTAGGAAAAAA--CAATAAAATTTATACA---TTTTTCATAAAATGTGTCCATGGT-CAAGTTCGTGGAGT-TCATACAGCAACCTTGTCCTTCCAAAAATTTTGCGAATCTCA----CAC-T-ACA---CAAAAA---GTGGACAAGCATAAAATCTAA-CAAATACAAAAATTATGCACTAC-AAAGTTCATTT-CTA-------CCGATCAGCAATTT--TC-TT----TGGAATCAGTGCTCCCTGATGAT-GT-----AAAA---GGA----CT--TCA--ATTGCAACCTTAAAT-C-ATTTAAATGAAA-AACCATAGAACTC----C-ACCATC--TACTATCTCA-AGGCTCAGCGGCAAGTTGCATAGATTTTACATTA--CCGTCTAGGTATGAATTGC-GTCTAATCAAATACCTATTTATTTTTTCTAGAAAACATTGTAGA-AGTCCTTTATGTGTTTGATGGCAAGATAGAA-GACACCAAACAGCT--ATTT--CTAGAATGTCCTCTGTATCAAGTAACTTAGGCGAAAATAATTTTTCAAAT-TA-GGCAAACAATGTTAAAACTACCTTACTGGC-TGCTTTGGAGACCCAAA-CTATCAGTAT-TGCAAAACA---AAT-TATATTTCAATC----A----GTAC-AT-AATAT--AT-AATCAAAGTAACGAGATTCGATT-CTGCGTTGTTAT-TATTGTAA--------------TGT-ATTTTTC---------TGT-AATA-GAGACAAT------AATGTTCATA-GAC-GTA-T-ACAACAGTCATCA-CTCCTT--CA-T----TGTA--TAT-GTTTCAGCA-TT-TT--TGTAATTTGGTATTTATT-GTA--CTC--ATTATTCCGT---AGTT--AAGAAT--TTT--------ATGTA-T---ATT-ATTATATG-TACA-A-------GTAGG-AGAA-CGATTTAACTAAGTCT-TTTCG-AA-TTGTTTCTATTGAAT---T-ATT-TA--T--------AACATTATG-ATGTATTG-TTGTGATGT-G-TG-A--------ATAC--CTTGTGTTTACAA-CGTCAAAT-TCATACA-GTTTAAAC
gi|20 : AAT-CGT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------GTAC--T---TGTTT-CAA-CGAC-AAT-AAATACA-GTTTAaacatgcaataagagttctttataggtgggacatttta
gi|21 : tcattctttaccatgtcTA--TTAGTATTTATT-GTA--CTT--AAAATTTCAT---AG------------TTT--------AT-TATT---ATT-ATTATATGTTAC----------GTAGG-AGAC-AGATTTACATAA
gi|22 : GG-AGAC-GGATTTACATAAGTC--TT--GTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----TTG-ATGTATTG-TT----CAT-T-T
gi|26 : -CAT-AAATCTAACCAAATAC-AAAATTACGCACTACAAAAATTCAcc
gi|3 : TCATACTTAAACAAATCACTAACTTCTTTGGTATATCCCGATATGT-GAAAAAAAAAAAAATGTCGTACCCGTTCATAAAAAGATTGTAAAAATATTATAAC-TAATTACAGGCCAATTTCTTTAATTAGCATATATAGTTGGGATCGTAATGGGAAAATCGTGTTTATAATCACTTGATTAGTTACATATAAGAAAATCAAATCTTGTGCAAAAATCAG-TCAGGTTTTATTCAAGGTGACTCTACTGTACAAAAACCTTTGGACATTTCTAAGTATATTGGTAAAGCTATT-GACCAGGATAGAGAAGTAGGGGAAG----TTTTTTGTGACATAAGTAAAGCATTCGACAGGA-TTTGGCATGTTGAATTAATATTTAAACTATTCCGGATCCAGTCCGGTTTTTCAGGAAAGGTTCTGTCTTGACTAGAGGACTGCATGTACATGTATATACATGTATACCCAATTGAAGCAAAAGAATGATAATCAACTCTAAATCATATAAATGGGTAAGAATAAACGTTGGAGTTCCACAAGGTTCTGTATTAGGTCCTCTTTTGTTTCTTAATTTTATAAA-GACAT-TGCCCTTGACATA-------TAA---TATT-AAACTATTTGCAGATAA-CA-CT-ACTTTATATATCGCCGTTG-ATAATCC-ACAATTTGCAAGTAATATT-CTAAATAATGATCTTCAGAAAATCCACCAGTGGTCTA-AGCACTGGATG-GTTGAATTCAAT-CCGCC-CAAACCATAATCATTAATAATAAGCAAA-AAACGCGCTCAAACTACAC-ATCCAGA--TTTA--TTCTTAATCAATTGCATCATAAAAAA--TGTTGAGAGTCATA-AGCA-TCTAG-----------------------GCGTTACATTT-TCCCAAAA-TGGGTTA-TGGTGTTCTCA-TGTAAAATCTGTTC------------TCCCCAAAGCTCTTGTT-CGATTAAATATGCTACGTAAAATTACCTATCTACTAGATAGA--AGATCATTAAAAAAAAGTTTTA---TTTATCTT-TTAT-TAGACATGTCCTTTAATATGCTGAA--ATAA-TTTGGGACAATATTTCTG-TTG--AACTCG--GTCAAAAACTTGAACA----AAAC--A--AAAC-----------------------TTATAAA---TATTC---------TTAAC--CTTTACGATGAACTGGGCTGGG-AGCCCC-TTGAAAACAGAAGAAAAAAAATTCCATAAAA-TTATACATAC-TTTTCATAAAATG-ATCCA-CGGCCAAGTTCAT-GAGTATC-TAT-GAAACCTTGTTCCTCCAAAAA-TATGCGAATCCCACACACACATAATA---C-A--A---GCGGACAA-CAT-AATTCTAACCAAATAT-AAAACTACTCACTACAAAAATTCATTT-CTACCAGAACC--ATCAACTA-TTTCTC-TT----TGGAA-CAGT-CTCCCTGATGAT-GTAAATAAAAA---AGAACCCCC--TCAATATCAC-ACCTTAAACGTCACTTATATTAAA-TA-G--AAATCCC----CTCC
gi|4 : C-ACCTTGAACGTGATTTAAATAAAAACATC--AAACCCC----CTCC-ACC-ATACTTCCTCACAGGCTCAC-AGCAAGTT---CAAATTTTACA-TATTCG-TCTACGTATGAATTGCAGTTCACTCAATTACC-ATTTATTTTCT---AAAAACATTGTAGATAGTCCTTTATGTGTTTGT-GGCAAGATAGAA-GACACCAAACA-CT--ATTT-CCTAGAATGTCCTCTGTA-CAATCAACTCAGGCGAAAAT-ATCTTTCAAATCTA-G-CAAATAATGTCAACACTAACCTACT-GC-T-CTTTGGAGACCCAAACCTATCAGTAT-CTCAAAACA---AATCTATATTTCAATC----ATGCAGTAC-ATAACTAT--ATCAAGCAAAGTAA-GAGATTCAATTCCTGAG-TGTTATGTATTGTAA--------------TGTTATTTTTC---------TGT-TATA-GCGAAAAT------AAT-TTCATACGAC-CTA-TTAC-AC-ATCATCATCACTCT--TAAT----TGTA--TAT-GTTTCAGCA-TT-TT--TGTA--TTTGTATTTATT-GTA--CTC--AAAATTCCATCG---CTTAAAGAAGA-TGT--------AT-T---ATTATT-ATTATATGTTAC----------ATAGG-AGAC-AGATTTACATAAGTC--TTTCGAAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------ATAC--T---TGTTT-CAA-CGTC-AAT-AAAac
gi|5 : aAGTTCCT-GAGTAA---AT-GCAACATTGTTCCTTCTAAAA-TATATGAATCCCACT--CGCAT-ATA---C-AAGA-------------------------CAA-TAT-AAAACCACGCACTGCAAAAAGCAACTT-CTAT------C--CTCAAATA-TT--TCTCTGCGGTGGAA-CAGT-CTTCCTGACGAT-GT------------------------CAAGATTGC----TTAA--------TA---GAAA-TACC--AACCCCCTCTGCTCCTCCCTGTACTTTCTCATAGGTTCAG-GACAAGTT---------TTA---------------------ATTGCAGTTTACTCAATTACC-ATTTATTTTG----AAA---ATCGTAG---------TATGCGT-----------ATACAA-GACTCCAAACA-TT--ATT----TAGAACATCGTCTA--------AATCTAG---------------CAAA-----------CAATATTACCACGGAAATACA-GC-T-TTCTGGAGATCC--ACCT-----TA---TCAAAA--------------GTCGACC----A----GTTC--T---TGT--ATCACACAAA---------------TCCTAAG-TTTTGTGTACTATAATGATACCAGGGCCCTGC-ATATTAT---------CGT-AA-A-ACGACGAGGAGGAAAGT-TTTACACGAC-----------C-ATCACCATCACCCTTGTA-T----A-TA--CAT-GTTTC-aatatcgtt
gi|6 : -CT--AATT-CTTAAAATGGTCATTGTA-CAATAAACTTTGACAAAAAT-ATCTTTCAAATCTA----------------CACAAACCTACT-GC-A-CTTTGGGAATCCAAACCTATCAATAT-CTCAAAACA---AATATATATTTCAATC----A----GTAC-ATAAATAT--ATAAAGCAAAGTA--------------CTAAG-TATTATGTAACATAATAGTACTAAAGACTTGC-ATTTGTCCTTTTTTATTGTCAGTATACG-CAAG------A---TGCGAAAGAC-CCATC-AC-AC-GTCATCATCACCCT--TG-TATAAT-TACTTAT-GTTTC-aac
gi|6 : TC-ATTATACGT-ACATGTAAC---ATAGG-AGAT-GGATTTACATAAGTC--TTTTGTAC-TTGTCTC---CGAAT-CCT-A-T-CA--T--------A-----tccatagcttcattatacgtacatgtaacataggagatggatttacataagtcttttgtacttgtctccgaatcctatcata
gi|7 : ctaattcttaaaatggtcattgtacaataaactttgacaaaaatatctttcaaatctacacaaacctactgcactttgggaatccaaacctatcaatatctcaaaacaaatatatatttcaatcagtacataaatatataaagcaaagtactaagtattatgtaacataatagtactaaagacttgcatttgtccttttttattgtcagtatacgcaagatgcgaaagacccatcacacgtcatcatcacccttgtataattacttatgtttctccatagctTCACACGAC-CCA-CCAC-AC-GTCACCATCACCCT--TG-T----G-TA--TAC--TTTT-GTA-TT-TGCATGTA--TACGTATTTCTTTGTA--TTTTTAAAATTCCAT---AGCTTTAAGGGGA-GTT--------GT-TATC---ATT-ATCACATGTAACATA-------A---G-AGAC-GGATTTATATAATTC--TTTTGTAC-TTGTTTC---CGAAT-CCT-A-T-CA--T--------G-----CTA-ATATCATG-TT----TGT-A-GGTACAAGTATCATACCAT---TTCTT-CAATCAAT-AAT-AAATACAGGTTTAAGC
gi|8 : TTTTGTTTCTTATTTTTATAAACGACAT-TGTCCTTGACATAAAA-T-GTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTTTATATATCGTTGTTG-AAAACCC-ACAATCTGCAAGCAATATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGCTC-GTCGAATTTAAT-CCG-TCCAAAACAGAATCCTTGATAACAAGCAAC-AAACGCACTCAAACTACAC-ATCCaaaattt
gi|9 : --TA-T----T-TA--TATTGTTCA-GCAATTATT--TGTA--TT-GTATT-ATT-GTAAATTC--AAAATTCCA--GTAGTTTAGAGTAGA-TTTGGTTATTCAT-TATT---ATT-ATCAT-TGTTATATA--------TCGG-AGACAGGATTTACATAGATCATTTCCGTAC-TTGTGTC---TGAAT-CCT-G-TGTA--T--------A-----AT--ATGTATTG-TT----TGTGT-TGTA--------GCAC--T---TGTG--AAA-CGTC-AAT-AAATACA-GTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AACTAAGTATGGGTATAAAATTGGTCTTTGAAATAACTCTATAAATTTCAAATAACGGTACATAACAAAGACGTATCACACTT
Unaligned ( gi|23 ): TTTCTCTATTCCAACATTGTATCCTTTAAATGTAAATGCCAAGGTCTGTGGACAAAGCA
Unaligned ( gi|24 ): TAACCATTTTGAATACATGTGTGATTCTAACATGCATCTAAGATTTACCAAAATA
Unaligned ( gi|25 ): TTACCAATAATGAAACGTAACTTGTAAAATCGATAAACATTTTATTC
Unaligned ( gi|27 ): ACTAATTTAAGAAGGAGAGCCAGTAAATTTAAAGAACT
Unaligned ( gi|28 ): CGAAACACGGCCTTTTAAATACCACAATGACC
Alignments
lowQualScore : 11111111111111111111111 11111111111111111111111 1111111111111111111111111111111
lowQualScore : 1 1 1 222 1 1 1 2222 1 1 1 1 1 1 2222222 222222 11 1 444444444444 3333333 1 1 1 1 1 2 111 1 1 1 1 2 1 1 1111 1 111 1 1 11 1 22 1 1 2 22222222222222222222222 1 2 2 2 2 00000000000000000000000 1 2 11 222 1 1 111 1 33 11 1111 11 222 77777777777777777777777777777777 11 1 1 11 2 222 1 33 1 1111 1 1 3333 1 111 2222222 1 222222 1 1 11 1 2222 1 1 1 666666666666666666666 1 1111111 1111 11 1 11 2222 33333333 1 11 1 11 22 1 22222222 1111 111 1 111111111 3333333333333333333333333333333 111 2222222 2222222 222222 1 11 222 11111111 333333333333 11111111 11111111 111
lowQualScore : 5 5 5 1 1 111 5 5 5 4444 22 5 1 5 1 5 5 1 1 22 22 5 5 8888888 7 888888 66 5 666666666666 2222222 1 1 1 5 5 5 1 5 8 2 0 2 2 3 0 777 0 0 0 0 3 2 0 1 3 0 3 2 0 9999 0 444 7 0 2 3 0 88 7 3 1 6 22 2 3 3 33333333333333333333333 3 3 3 6 3 7 55555555555555555555555 3 7 7 7 6 88 333 3 3 1 1 666 7 7 6 3 00 88 6 8888 88 6 333 66666666666666666666666666666666 88 0 3 3 88 3 555 3 7 11 1 0 3333 0 3 0 1 6666 3 0 777 2222222 22 8 8 1 5 0 8 0 0 888888 6 0 1 0 33 0 1111 0 0 0 222222222222222222222 66 8 0 5 6 3 1 1 2222222 1 7777 0 00 0 6 00 4444 0 3 66666666 2 3 1 0 33 3 3 0 3 22 3 33 0 3 6 99 99 1 6 1 6 1 22222222 3 1 1 6 1111 6 5 000 7 1 555555555 5 5 1 77 7 77 1 2 8 5555555555555555555555555555555 111 8 0 8 55 3333333 3 8 0 2 3333333 6 6 77 5 111111 77 5 1 8 8 11 99 7 3 6 99 99 999 1 66 0 55 88888888 5 0 555 4 666666666666 3 3 77 4 0 3 555 2 2 2 5 33 00000000 77777 6 3 6666 3 3 44444444 55 111 4 4 8 4 4
lowQualScore : . . . . . ... . . . .... .. . . . . . . . . .. .. . . ....... . ...... .. . ............ ....... . . . . . . . . . . . . . . . ... . . . . . . . . . . . . . .... . ... . . . . . .. . . . . .. . . . ....................... . . . . . . ....................... . . . . . .. ... . . . . ... . . . . .. .. . .... .. . ... ................................ .. . . . .. . ... . . .. . . .... . . . . .... . . ... ....... .. . . . . . . . . ...... . . . . .. . .... . . . ..................... .. . . . . . . . ....... . .... . .. . . .. .... . . ........ . . . . .. . . . . .. . .. . . . .. .. . . . . . ........ . . . . .... . . ... . . ......... . . . .. . .. . . . ............................... ... . . . .. ....... . . . . ....... . . .. . ...... .. . . . . .. .. . . . .. .. ... . .. . .. ........ . . ... . ............ . . .. . . . ... . . . . .. ........ ..... . . .... . . ........ .. ... . . . . .
lowQualScore : 5 0 5 0 0 000 5 5 5 5555 00 0 0 5 0 5 5 0 0 00 00 5 5 7777777 3 555555 55 5 000000000000 5555555 0 0 0 0 0 0 0 0 8 5 0 5 5 2 0 555 0 0 0 0 2 5 0 0 2 0 2 5 0 0000 0 888 0 0 5 2 0 33 3 3 0 7 77 0 3 7 33333333333333333333333 3 7 7 7 7 3 00000000000000000000000 3 3 3 3 7 33 333 3 3 0 0 777 3 3 7 3 33 33 7 0000 33 7 333 00000000000000000000000000000000 33 7 3 3 33 7 777 3 3 77 0 0 2222 0 2 0 0 2222 2 0 555 0000000 88 0 0 0 0 8 0 8 0 888888 5 0 0 0 88 0 2222 0 0 0 888888888888888888888 22 0 8 0 0 8 0 4 8888888 0 0000 8 55 5 5 22 0000 8 2 55555555 5 2 0 0 88 2 2 0 2 55 2 88 0 2 7 22 22 7 7 0 7 7 55555555 2 0 0 7 0000 7 7 000 1 4 333333333 7 0 3 99 9 11 5 5 0 6666666666666666666666666666666 888 0 8 0 88 6666666 8 0 3 5 7777777 7 7 99 7 777777 99 7 4 0 0 00 22 5 2 7 22 22 444 7 77 3 11 11111111 0 1 666 4 333333333333 1 1 33 0 8 1 444 9 9 9 7 99 44444444 11111 2 1 5555 1 1 55555555 55 000 0 0 0 0 4
consensus : NTCATACTTAAACAAATCACTAACTCCTTCGGTATATCCCGATATGTTGGAAAAAAGNAAANTGTCGTACCCGTTCATAAAAAGATTGTGAAAATATCATAACATAATTACAGGCCAATTTCTTTAATTAGCACATATAGTTGGGANNGTAATGGGAAAGTCGTGTTTATAATCACTTGATNAGTTACATATANGAAAATCAAATCTTGTGCAAAAATCAGATCAGGTTTTNTTCAAGGTGACTCCACTGTANANNAACCTTTGGACATTTCTAANNATATTGGTAAAGCTATTTGATCAGGGTAAAGAAGTAAGGGGCG----TTTTTTGTGACATAAGTAAAGCATTCGACAGGGTTTGGCATGCTGGATTAATTTTTAAATTATTCCGGATCCAGTCCGGTTTTTCAGGAAAGGTTNTGTCTTGGCTAGAGGACTGCATGTACATGTATATACATGTATACCCAATNGAAGCNAAAGAGTGGTAATCAACTCTAAATCATNTAAATGGGTAAGAATAAACGCTGGAGTTCCACAAGGTTCTGTATNAGGTCCTCTTTTGTTTCTTATTTTTATAAACGACAT-TGTCCTTGACATAAAA-TGTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTTTATATATCGTTGTTG-AAAACCCACAATCTGCAAGCAATATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGNC-CGTCGAATTCAAT-CCG-T-CAAAACAGAATCCTTGATAATAAGCAAC-AAACGCACTCAAACTACAC-ATCCAGA--TTTGTT-CTTAAACAANTGCATCATAAAAAAA-TGTTGAGAGTCATA-AGCA-TCTAG-----------------------GCGTTACATTT-TCCCAAAA-TGGGTTA-TGGT-TTCTCA-TGTAAACTCTGTTC--------T--------CTCTC-TT-CGATTAAATATGCTACGTAAAATAAGTTATATACTAGATAGAAGATCATT--AGAAAAGTTTTA---TTTATCTT-TTAT-TAGACNTGTCCTTNAATATGCAGAA-ATAATTTTGGGACAATATTTCTG-TCG--AAC--TCGGTCAAAAACTTGAACGGTT-AAA--CAGGAAGC---CGCTAGAATCGTATC--GG--G-TA-AAAA--TACTCAAA-TA-T-TTAAT--CTTTACGATGAACTGGGCTGGG-AACCCC-TTGAAAACAGAAGAAAAAAAA--CCATAAAA-TTATACAT--TTTTCATAAAATG-GTCCATCG--CAAGTTCNT-GAGTATC-TAC-GCAACCTTGTCCCTCCAAAAA-TNTGCGAATCCCAC---CACAT-AT---AC-AAG---AGCGGACAA-CAT-AAATCTAACCAAATAC-AAAACTACGCACTACAAAAATTCATTT-CT------ACC-ATCAACNA-TT--TC-CT----TGGAA-CAGT-CTCCCTGATGA-TGTAAA--AAAAGGA----CC--TCAATATCGC-ACCTTAAACGT-ATTTAAATGAAA-CACC--AAANCCC----CTCC-CACCGTACTTCCTCACAGGCTCAG-GGCAAGTT---CAAATTTTACA-TAC-CC-TCTACGTATGAATTGCAGTTCACTCAANTACC-ATTTA--TTTTCTA-AAAACATTGTAGATAGTCCTTTATGTGTTTG--GGCAAGATAG-AAGACACCAAACA-CT--ATTT-CCTAGAATGTCCTCTGTA-CAATCAACTTAGGCGAAAAT-ATCTTTCAAATCTA-GGCAAACAATGTTAACACNAACCTACT-G-CT-CTTTGGAGACCCAAACCTATCAGTATCTC-AAAACA---AAT-TATATTTCAATC----A----GTAC-ATAAATAT--ATCAAGCAAAGTAA-GAGATTCAATTCCTGAG-TGTTATGTATTGTAA-------------T--T--CAG-----TGT-TATTTTT--CTGT-AATA-GCGACAAT------AAT-TTCATACGAC-CTA-C-AC-AC-GTCATCATCACCCT--TA-T----T-TA--TAT-GTTTC-GCA-TT-TT--TGTA--TTNGTATTTATT-GTA--CTC--AAAATTCCATCG-AGCTTAAAGAAGA-TTT--------AT-TATT---ATT-ATTATATGTTACATA-------ATAGG-AGAC-GGATTTACATAAGTC--TTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------ATAC--T---TGTTT-CAA-CGTC-AAT-AAATACA-GTTTAAAC
Reference ( family-374 ) : NTCATACTTAAACAAATCACTAACTCCTTCGGTATATCCCGATATGTTGGAAAAAAGNAAANTGTCGTACCCGTTCATAAAAAGATTGTGAAAATATCATAACATAATTACAGGCCAATTTCTTTAATTAGCACATATAGTTGGGANNGTAATGGGAAAGTCGTGTTTATAATCACTTGATNAGTTACATATANGAAAATCAAATCTTGTGCAAAAATCAGATCAGGTTTTNTTCAAGGTGACTCCACTGTANANNAACCTTTGGACATTTCTAANNATATTGGTAAAGCTATTTGATCAGGGTAAAGAAGTAAGGGGCG----TTTTTTGTGACATAAGTAAAGCATTCGACAGGGTTTGGCATGCTGGATTAATTTTTAAATTATTCCGGATCCAGTCCGGTTTTTCAGGAAAGGTTNTGTCTTGGCTAGAGGACTGCATGTACATGTATATACATGTATACCCAATNGAAGCNAAAGAGTGGTAATCAACTCTAAATCATNTAAATGGGTAAGAATAAACGCTGGAGTTCCACAAGGTTCTGTATNAGGTCCTCTTTTGTTTCTTATTTTTATAAACGACAT-TGTCCTTGACATAAAA-TGTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTTTATATATCGTTGTTG-AAAANCCACAATCTGCAAGCAATATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGNC-CGTCGAATTCAAT-CCG-T-CAAAACAGAATCCTTGATAATAAGCAAC-AAACGCACTCAAACTACAC-ATCCAGA--TTTGTT-CTTAAACAANTGCATCATAAAAAAATTGTTGAGAGTCATA-AGCATTCTAG-----------------------GCGTTACATTT-TCCCAAAATTGGGTTATTGGT-TTCTCATTGTAAACTCTGTTC--------T--------CTCTT-TT-CGATTAAATATGCTACGTAAAATAAGTTATATACTAGATAGAA-ATCATT--AGAAAAGTTTTA---TTTATCTT-TTAT-TAGACNTGTCCTTNAATATGCAGAA-ATAATTTTGGGACAATATTTCTG-TTGTCAAC--TCGGTCAAAAACTTGAACGGTT-AAA--CAGGAAGC---CGCTAGAATCGTATC--GG--GTTACAAAA--TACTCAAA-TATT-TTAAT--CTTTACGATGAACTGGGCTGGG-AACCCC-TTGAAAACAGAAGAAAAAAAA--CCATAAAATTTATACAT--TTTTCATAAAATG-GTCCATCG--CAAGTTCNT-GAGTATC-TAC-GCAACCTTGTCCCTCCAAAAA-TNTGCGAATCCCAC---CACAT-AT---AC-AAG---AGCGGACAA-CAT-AAATCTAACCAAATAC-AAAACTACGCACTACAAAAATTCATTT-CT------ACC-ATCAACNA-TT--TC-CT----TGGAA-CAGT-CTCCCTGATGA-TGT-----AAAAGGA----CC--TCAATATCGC-ACCTTAAACGT-ATTTAAATGAAA-CACC--AAANCCC----CTCC-CACCGTACTTCCTCACAGGCTCAG-GGCAAGTT---CAAATTTTACA-TA--CC-TCTACGTATGAATTGCAGTTCACTCAANTACC-ATTTA--TTTTCTA-AAAACATTGTAGATAGTCCTTTATGTGTTTG--GGCAAGATAG-AAGACACCAAACA-CT--ATTT-CCTAGAATGTCCTCTGTA-CAATCAACTTAGGCGAAAAT-ATCTTTCAAATCTA-GGCAAACAATGTTAACACNAACCTACT-G-CT-CTTTGGAGACCCAAACCTATCAGTATCTC-AAAACA---AAT-TATATTTCAATC----A----GTAC-ATAAATAT--ATCAAGCAAAGTAA-GAGATTCAATTCCTGAG-TGTTATGTATTGTAA-------------T--TA-CAG----CTGT-TATTTTT--CTGT-AATA-GCGACAAT------AAT-TTCATACGAC-CTA-C-AC-AC-GTCATCATCACCCT--TA-T----T-TA--TAT-GTTTC-GCA-TT-TT--TGTA--TTNGTATTTATT-GTA--CTC--AAAATTCCATCG-AGCTTAAAGAAGA-TTT--------AT-TATT---ATT-ATTATATGTTACATA-------ATAGG-AGAC-GGATTTACATAAGTC--TTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------ATAC--T---TGTTT-CAA-CGTC-AAT-AAATACA-GTTTAAAC
gi|1 : TCATATTTAA-CAAATCA-TAACTCTTTCAGTATATCCCGATATGTTGGAAAAAAGCAAATTGTC---CCCGTTCATAAAAAAAT-GTGAAAA-ATCATAACATAATTACAGGCCAATTTCTTTAATTAGCACA----GTTGGGAAGGTAATGGAAAAGT-GTGTTTATAATCACTTGATAAAT-ACATATACGAAAATCAAATTTTGTGCAAAA-TCAAATCAGGTTTTTTTCAAGGTGACTCCACTGTAAATCAACTTTTGGATATTTCTAACGA-ATTGGTAAAGCTATTTGATCAGGGTAAAGAAGTAAGGAGCG----TTTTTTGTTACATAAGTAAAGCATTCGACAGGGTT-GGCATGCTGGATTACTTTTTAAATTATTCC------AGTCCGGTTTTTCAGGAAAAGT-ATGTCT-GGCTAGAGGACT------------ATAT-------TATCCAATAGAAGCCAAAGAGTAGTAATCAACTCTAAATCATCTAAATGGGTAA-AATAAACGCTGGAGTTC-ACAAGGTTCT-TATGAG-TCCTCTTTTGTTTCTTATCTTTATAAACGACAT-T-TCCTTGACATAAAATTGTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTTTATATATCGTTGTTGAAAAACCCACAATCTGCAAGCAA-ATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGGCTCGTCGAATTCAAT-CCG-T-CAAAACAGAATCCTTGATAATAAGCAAC-AAACGCACTCAA--TACAC-ATCCAGA--CTTG-T-CTTAAACAACTGCATCATAAAAAAA-TGTTGAGAATCATA-AGCA-TCTAG-----------------------GCGTTACATTT-TCCCAAAA-TGGGTTA-TGGT-TTCTCA-TGTAAACTCTATTC--------T--------C-----TT-CGATTAAATATGCTACGTAAAATAAGTTATATACT---TAG-A-ATCATT--AGAAAAGTTTTA---TTTATCCT-TTATCTAGACCTGTCCTTGAATATGCAG-A-ATAATTTTGGGACAATATTTCTGCTTGTCAAC--TCAGTCAAAAACTTTGACGGTT-AAACCCAGGAAGCGCTCGCTAGAATCGTATCCGGG--GGTACAAAA--TA--CAAA-TA-T-TTAAT--CTTTACAATGAACTGGGCTGTG-AACCCC-TTGAAAACAGAAGAAAAAAAA--CCATAAAA-TTATACA---TTTTCATAAAATG-GTCCCTCG--CAAGTTCCT-GAGTATC-TAC-GCAACCTTGTCCC-CCAAAAA-TTTGCGAATCTCAA---CACAC-ATAACAC-AAGACAAGCGGACAA-CAT-AAATCTAACCAAATAC-AAAACTACGCACTACAAAAATTCATTTACT------A-C-ATCAACAA-TT--TC-CT----TGGAA-CAGT-CTCCCTGATGATTGTAAA--AAAAGAA----CCCTTCAATATCAC-ACCTTAAACGT-ATTTAAATAAAA-CATC--AAAACCC----CTCC-CACCATACTTCCTCACAGGCTCAG-CGCAAGTT---CAAATTTTACA-TAC-CC-TCTACGTATGAATTGCAGTTCACTCAAATACC-ATTTA--TTTTC-A-AAAACATTGTAGATAGTCCTTTATGTGTTTG--GGCAAGATAGAAAGACACC-AACA-CT--ATTT-CCTAG-ATCTCCTCTGTA-CAATCAACTTAGGCGAAAAT-ATCTTTC-AATCTATGACAAACAATGTCAACACTAACCTACT-GCCT-CTTTGGAGACCCAAA--TATCAGTATCTC-AAAACA---AAT-TATATTTCAATC----A----GTACTATAACTAT--ATCAAGCCAAGTAA-GAGATTCAATTCCTGAG-TGTTATGTATTGTAA---------------------------TGT-TATTTTT--CTGT-AATA-GCGA-AAT------AAT-TTCATACGACACTA-C-AC-AC-ATCATCATCACCCT--TA-T----T-TA--TAT-GTTTC-GCA-GT-TT--TGTA--TTTGTATTT-TT-GTA--CTC--AGAATTTCATCATAGCTTAAAGAAGA-TTT--------AT-TATT---ATT-ATTATATGTTACATACACAAATGTAGG-AGAC-AGATTTACATAAGTC--TTTCGAAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGA-T-TGTA--------ATAC--T---TGTTT-CAA-CATC-AAT-AAATACA-GTTTAAAC
gi|10 : aTA-------A-AGG-AGAC-AGATTTACATAAGTC--GTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--TAAATTTATA-----ATG-ATGCATTG-TT----TGT-T-TGTA--------TCAC--T---TGTTT-CAA-CGTC-AAT-AAATACA-GTTTAAAC
gi|11 : ccataacttataaaagaagattG-AGAC-GGATTTATATATGTC--ATT-GTAC-TTGTTTT---TGAAT-CCTAA-TGTAGTT--------A-----ACGTATGTACTC-TT----TAT-T-caaatgtgtaacaacagttttatttttatatgaaagtttttatttactcggtcagtatacgt
gi|12 : tcacatagccccattaccattttatttcgtttatttttctgtatacttatgtttacacatacatgttcctatcataactataggacgatttAATA-CTGAATCTACTTAGAA-GTCAATTGTA-TGATCAACTGAGGGGCAAAT-ATCTTTTGGGGC-A-AGCAAACA---TTAACACAAATCGA-T-G--------GGCAACCCAAACTTATCAGCATCCCCAAAACATATAAT-TATAT--CAATC----A----GTGC-ATAAATAT--AT-ATTCAAAGTAA-
gi|13 : AAA-TTT--------AT-TATT---ATTAATTATATGTTA-AC--------ATAGGCAGAC-AGATTGACATAAGTC--TTTCGAAC-TTGTTGC---TGAAT-CC--A-T-T---T--------A-----ATG-ATG-ATTGCTC----TGT-TATGTA--------ATAC--TA--TGTTA-CAA-AGTC-AATAAAATA-A-GTTTAAAC
gi|14 : AAATTTAATCG-ACCTAAAATATGAATTT--------AT-TATG---ATT-ATTATA-GTTACATA-----------G-AGAC-A-ATTT-CAAAAGTC--TTT--TAC-TTGTT-C---TGAATTCCT-A-T--A--T--------A-----ATG-ATGCATAG-T------GT-T-T-TA--------ATAC--T---TGTTT-CAA-CGTCTAAT-AAATACA-GTTTAAcaaaatagtttcat
gi|15 : G-AGAC-GGATTTACATAAGTC--TT--GTACCTTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----TTGAATGTATTC-GT----TAT-T-T
gi|16 : gaTAAGTC--TTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-A-----TG-TT----TGT-T-TGTA--------GTAC--T---TGTTT-CAA-CTTC-AAT-AAATATA-ATTTcccagcaaacagtcatcgacgtcatttcgacgtcagatttaagtcgttt
gi|17 : tttacatattaatATCAGGGTAAAGAAGTAAGGG-CGGTTTTTTTTTGTGACATAAGTAAAACATTCGACAGGGTTTGGCCTGCTAGATTAATTTTTAAATT
gi|18 : C-AAAACA---AATCTATATTTCAATCTGACA----GTAC-ATAAATATATATCAAGCAAAGTAA-GAGATTCAATTCtt
gi|2 : gacacgaaatatgtaaaCTTTTGTTTCTTATTTTTATAAAGGA-ATATGTC-TTGACATAAAAATGTAAAAGCATTGAAACTATTTGCAGATGAACATCTCACTT-ATATAT--TTGTTGTGAAAACCACAATCTGCAAGCAATATTGCTAA-TAATGATCTTCAGAAAATCGAT-AGTGGTTGATAGCAATGG-C-TGTCGAATTTACTTCCG-T-CAAAACAGAATCCTTGATAA-AAGCAACCAAACGCA-TCAAACTACACGATCCAGAACTTTGTTTCTTAAACAAGTGCAT-ATAATAAAATTGTTAAAA-TCATAGAGCATTCTAGCGTTAACTTTTCCCAAGATGGTAGCGTTACATTTGTTCCAAAATTGGGTTATTGGTCTTCTCATTGTAA-CTCTGTTTCTACGAAAT--------CTTTC-TTGCGATTAAATATGCTAAGTAAAATAAGTTA-ATACTAGATAGAAGATCATT--AGAAATGTGTTGAATTTTATCTTGTTAT-TAGGATTGTCTTGAAATATGCAGAGTATAATTT-GGGATATGATTT-TG-TCG--AATAATCG-TCAAAAACTTGAACGGTTTAAA--CAGGAAGC---CGCTAGAATCGTATC--GGTGGTTA-AAAACTTACTCAAAATATTATTAATAACTTCACAATGAACTGGCATGGGTAACTCCGTTGAAAACAGGTAGGAAAAAA--CAATAAAATTTATACAT--TTTTCATAAAATGTGTCCATGGT-CAAGTTCGTGGAGT-TCATACAGCAACCTTGTCCTTCCAAAAATTTTGCGAATCTCA----CAC-T-AC---ACAAAA---AGTGGACAAGCATAAAATCTAA-CAAATACAAAAATTATGCACTAC-AAAGTTCATTT-CT------ACCGATCAGCAATTT--TC-TT----TGGAATCAGTGCTCCCTGATGA-TGT-----AAAAGGA----CT--TCA--ATTGCAACCTTAAAT-C-ATTTAAATGAAA-AACCATAGAACTC----C-AC-CATC-TACTATCTCA-AGGCTCAGCGGCAAGTTGCATAGATTTTACATTA--CCGTCTAGGTATGAATTGC-GTCTAATCAAATACCTATTTATTTTTTCTAGAAAACATTGTAGA-AGTCCTTTATGTGTTTGATGGCAAGATAG-AAGACACCAAACAGCT--ATTT--CTAGAATGTCCTCTGTATCAAGTAACTTAGGCGAAAATAATTTTTCAAAT-TA-GGCAAACAATGTTAAAACTACCTTACTGG-CTGCTTTGGAGACCCAAA-CTATCAGTATTGC-AAAACA---AAT-TATATTTCAATC----A----GTAC-AT-AATAT--AT-AATCAAAGTAACGAGATTCGATT-CTGCGTTGTTAT-TATTGTAA-------------T-------G---------TATTTTT--CTGT-AATA-GAGACAAT------AATGTTCATA-GAC-GTA-T-ACAACAGTCATCA-CTCCTT--CA-T----TGTA--TAT-GTTTCAGCA-TT-TT--TGTAATTTGGTATTTATT-GTA--CTC--ATTATTCCGT---AGTT--AAGAAT--TTT--------ATGTA-T---ATT-ATTATATG-TACA-A-------GTAGG-AGAA-CGATTTAACTAAGTCT-TTTCG-AA-TTGTTTCTATTGAAT---T-ATT-TA--T--------AACATTATG-ATGTATTG-TTGTGATGT-G-TG-A--------ATAC--CTTGTGTTTACAA-CGTCAAAT-TCATACA-GTTTAAAC
gi|20 : AAT-CGT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------GTAC--T---TGTTT-CAA-CGAC-AAT-AAATACA-GTTTAaacatgcaataagagttctttataggtgggacatttta
gi|21 : tcattctttaccatgtcTA--TTAGTATTTATT-GTA--CTT--AAAATTTCAT---AG------------TTT--------AT-TATT---ATT-ATTATATGTTAC----------GTAGG-AGAC-AGATTTACATAA
gi|22 : GG-AGAC-GGATTTACATAAGTC--TT--GTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----TTG-ATGTATTG-TT----CAT-T-T
gi|26 : -CAT-AAATCTAACCAAATAC-AAAATTACGCACTACAAAAATTCAcc
gi|3 : TCATACTTAAACAAATCACTAACTTCTTTGGTATATCCCGATATGT-GAAAAAAAAAAAAATGTCGTACCCGTTCATAAAAAGATTGTAAAAATATTATAAC-TAATTACAGGCCAATTTCTTTAATTAGCATATATAGTTGGGATCGTAATGGGAAAATCGTGTTTATAATCACTTGATTAGTTACATATAAGAAAATCAAATCTTGTGCAAAAATCAG-TCAGGTTTTATTCAAGGTGACTCTACTGTACAAAAACCTTTGGACATTTCTAAGTATATTGGTAAAGCTATT-GACCAGGATAGAGAAGTAGGGGAAG----TTTTTTGTGACATAAGTAAAGCATTCGACAGGATTTGGCATGTTGAATTAATATTTAAACTATTCCGGATCCAGTCCGGTTTTTCAGGAAAGGTTCTGTCTTGACTAGAGGACTGCATGTACATGTATATACATGTATACCCAATTGAAGCAAAAGAATGATAATCAACTCTAAATCATATAAATGGGTAAGAATAAACGTTGGAGTTCCACAAGGTTCTGTATTAGGTCCTCTTTTGTTTCTTAATTTTATAAA-GACAT-TGCCCTTGACATA------TAA---TATT-AAACTATTTGCAGATAA-CA-CT-ACTTTATATATCGCCGTTG-ATAATCCACAATTTGCAAGTAATATT-CTAAATAATGATCTTCAGAAAATCCACCAGTGGTCTA-AGCACTGGAT-GGTTGAATTCAAT-CCGCC-CAAACCATAATCATTAATAATAAGCAAA-AAACGCGCTCAAACTACAC-ATCCAGA--TTTATT-CTTAATCAATTGCATCATAAAAAA--TGTTGAGAGTCATA-AGCA-TCTAG-----------------------GCGTTACATTT-TCCCAAAA-TGGGTTA-TGGTGTTCTCA-TGTAAAATCTGTTC--------TCCCCAAAGCTCTTGTT-CGATTAAATATGCTACGTAAAATTACCTATCTACTAGATAGAAGATCATTAAAAAAAAGTTTTA---TTTATCTT-TTAT-TAGACATGTCCTTTAATATGCTGAA-ATAA-TTTGGGACAATATTTCTG-TTG--AAC--TCGGTCAAAAACTTGAACA----AAA--CA---------------AAACTTAT-------------AAA--TATTC---------TTAAC--CTTTACGATGAACTGGGCTGGG-AGCCCC-TTGAAAACAGAAGAAAAAAAATTCCATAAAA-TTATACATACTTTTCATAAAATG-ATCCA-CGGCCAAGTTCAT-GAGTATC-TAT-GAAACCTTGTTCCTCCAAAAA-TATGCGAATCCCACACACACATAAT---AC-A-----AGCGGACAA-CAT-AATTCTAACCAAATAT-AAAACTACTCACTACAAAAATTCATTT-CTACCAGAACC-ATCAACTA-TTTCTC-TT----TGGAA-CAGT-CTCCCTGATGA-TGTAAATAAAAAAGAACCCCC--TCAATATCAC-ACCTTAAACGTCACTTATATTAAA-TA-G--AAATCCC----CTCC-
gi|4 : C-ACCTTGAACGTGATTTAAATAAAAACATC--AAACCCC----CTCC--ACCATACTTCCTCACAGGCTCAC-AGCAAGTT---CAAATTTTACA-TATTCG-TCTACGTATGAATTGCAGTTCACTCAATTACC-ATTTA--TTTTCTA-AAAACATTGTAGATAGTCCTTTATGTGTTTGT-GGCAAGATAG-AAGACACCAAACA-CT--ATTT-CCTAGAATGTCCTCTGTA-CAATCAACTCAGGCGAAAAT-ATCTTTCAAATCTA-G-CAAATAATGTCAACACTAACCTACT-G-CT-CTTTGGAGACCCAAACCTATCAGTATCTC-AAAACA---AATCTATATTTCAATC----ATGCAGTAC-ATAACTAT--ATCAAGCAAAGTAA-GAGATTCAATTCCTGAG-TGTTATGTATTGTAA-------------T--------------GT-TATTTTT--CTGT-TATA-GCGAAAAT------AAT-TTCATACGAC-CTA-TTAC-AC-ATCATCATCACTCT--TAAT----TGTA--TAT-GTTTCAGCA-TT-TT--TGTA--TTTGTATTTATT-GTA--CTC--AAAATTCCATCG---CTTAAAGAAGA-TGT--------AT-T---ATTATT-ATTATATGTTAC----------ATAGG-AGAC-AGATTTACATAAGTC--TTTCGAAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------ATAC--T---TGTTT-CAA-CGTC-AAT-AAAac
gi|5 : aAGTTCCT-GAGTAA---AT-GCAACATTGTTCCTTCTAAAA-TATATGAATCCCACT--CGCAT-AT---AC-AAG---A----------------------CAA-TAT-AAAACCACGCACTGCAAAAAGCAACTT-CT------ATC-CTCAAATA-TT--TCTCTGCGGTGGAA-CAGT-CTTCCTGACGA-TG---------------------TCAAGATTG----CTTAA---T-A-------GAAA-TACC--AACCCCCTCTGCTCCTCCCTGTACTTTCTCATAGGTTCAG-GACAAGTT-------TT-----------------------AATTGCAGTTTACTCAATTACC-ATTTA--TTT--TG-AAA--ATCGTAG---------TATGCGT-----------ATAC-AAGACTCCAAACA-TT--ATT----TAGAACATCGTCTA----AATC----TAG---------------CAA-----------ACAATATTACCACGGAAATACA-G-CT-TTCTGGAGATCC--ACCT-----TA--TC-AAAA--------------GTCGACC----A----GTTC--T---TGT--ATCACACAAA---------------TCCTAAG-TTTTGTGTACTATAA-------------TGATACCAGGGCCCTGCATATTAT----CGT-AA-A-ACGACGAGGAGGAAAGT-TTTACACGAC-----------C-ATCACCATCACCCTTGTA-T----A-TA--CAT-GTTTC-aatatcgtt
gi|6 : -CT--AATT-CTTAAAATGGTCATTGTA-CAATAAACTTTGACAAAAAT-ATCTTTCAAATCTA----------------CACAAACCTACT-G-CA-CTTTGGGAATCCAAACCTATCAATATCTC-AAAACA---AATATATATTTCAATC----A----GTAC-ATAAATAT--ATAAAGCAAAGTA--------------CTAAG-TATTATGTAACATAATAGTACTAAAGACT--TG-CAT----TTGT-CCTTTTTTATTGTCAGTATACG-CAAG------A---TGCGAAAGAC-CCATC-AC-AC-GTCATCATCACCCT--TG-TATAAT-TACTTAT-GTTTC-aac
gi|6 : TC-ATTATACGT-ACATGTAAC---ATAGG-AGAT-GGATTTACATAAGTC--TTTTGTAC-TTGTCTC---CGAAT-CCT-A-T-CA--T--------A-----tccatagcttcattatacgtacatgtaacataggagatggatttacataagtcttttgtacttgtctccgaatcctatcata
gi|7 : ctaattcttaaaatggtcattgtacaataaactttgacaaaaatatctttcaaatctacacaaacctactgcactttgggaatccaaacctatcaatatctcaaaacaaatatatatttcaatcagtacataaatatataaagcaaagtactaagtattatgtaacataatagtactaaagacttgcatttgtccttttttattgtcagtatacgcaagatgcgaaagacccatcacacgtcatcatcacccttgtataattacttatgtttctccatagctTCACACGAC-CCA-CCAC-AC-GTCACCATCACCCT--TG-T----G-TA--TAC--TTTT-GTA-TT-TGCATGTA--TACGTATTTCTTTGTA--TTTTTAAAATTCCAT---AGCTTTAAGGGGA-GTT--------GT-TATC---ATT-ATCACATGTAACATA-------A---G-AGAC-GGATTTATATAATTC--TTTTGTAC-TTGTTTC---CGAAT-CCT-A-T-CA--T--------G-----CTA-ATATCATG-TT----TGT-A-GGTACAAGTATCATACCAT---TTCTT-CAATCAAT-AAT-AAATACAGGTTTAAGC
gi|8 : TTTTGTTTCTTATTTTTATAAACGACAT-TGTCCTTGACATAAAA-TGTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTTTATATATCGTTGTTG-AAAACCCACAATCTGCAAGCAATATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGCT-CGTCGAATTTAAT-CCG-TCCAAAACAGAATCCTTGATAACAAGCAAC-AAACGCACTCAAACTACAC-ATCCaaaattt
gi|9 : --TA-T----T-TA--TATTGTTCA-GCAATTATT--TGTA--TT-GTATT-ATT-GTAAATTC--AAAATTCCA--GTAGTTTAGAGTAGA-TTTGGTTATTCAT-TATT---ATT-ATCAT-TGTTATATA--------TCGG-AGACAGGATTTACATAGATCATTTCCGTAC-TTGTGTC---TGAAT-CCT-G-TGTA--T--------A-----AT--ATGTATTG-TT----TGTGT-TGTA--------GCAC--T---TGTG--AAA-CGTC-AAT-AAATACA-GTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AACTAAGTATGGGTATAAAATTGGTCTTTGAAATAACTCTATAAATTTCAAATAACGGTACATAACAAAGACGTATCACACTT
Unaligned ( gi|23 ): TTTCTCTATTCCAACATTGTATCCTTTAAATGTAAATGCCAAGGTCTGTGGACAAAGCA
Unaligned ( gi|24 ): TAACCATTTTGAATACATGTGTGATTCTAACATGCATCTAAGATTTACCAAAATA
Unaligned ( gi|25 ): TTACCAATAATGAAACGTAACTTGTAAAATCGATAAACATTTTATTC
Unaligned ( gi|27 ): ACTAATTTAAGAAGGAGAGCCAGTAAATTTAAAGAACT
Unaligned ( gi|28 ): CGAAACACGGCCTTTTAAATACCACAATGACC
Alignments
lowQualScore : 11111111111111111111111 1111111111111111111111111111111111111
lowQualScore : 1 1 1 222 1 1 1 2222 1 1 1 1 1 1 2222222 222222 11 1 444444444444 3333333 1 1 1 1 1 111 111 1 1 1 1 1 1 1 1 1111 1 111 1 1 11 22 1 1 1 1 22222222222222222222222 1 1 1 2 1 99999999999999999999999999 11 222 1 1 22 1 11 11 1111 333333333333 6666666666666 11 333333333333 11 1 1 11 1 11 1 33 1 1111 1 1 3333 1 111 33333 1 222222 11 11 1 222222 1 1 1 555555555555555555 1 11 1111 11 1 11 2222 222222 1 2222222 11 22 1 22222222 1111 111 1 111111111 3333333333333333333333333333333333333 111 2222222 2222222 222222 1 11 222 11111111 333333333333 11111111 11111111 111
lowQualScore : 5 5 5 1 1 111 5 5 5 4444 22 5 1 5 1 5 5 1 1 22 22 5 5 8888888 7 888888 66 5 666666666666 2222222 1 1 1 5 5 5 1 5 8 2 0 2 2 3 777 777 0 0 0 0 0 3 3 0 2 3 0 3 2 0 9999 0 444 7 0 2 3 0 88 00 1 6 7 3 2 3 3 33333333333333333333333 3 3 3 6 3 7 99999999999999999999999999 7 7 6 88 333 3 3 1 1 00 7 7 6 3 0 88 88 6 8888 222222222222 8888888888888 88 000000000000 88 0 3 3 88 3 88 7 3 7 11 1 0 3333 0 3 1 0 0000 3 0 777 33 00000 8 99 0 8 0 0 888888 22 1 33 0 222222 0 0 0 3 222222222222222222 3 8 0 5 6 3 1 1 99 6 11 1 7777 0 00 0 6 00 4444 0 3 000000 2 3 1 0 1111111 3 22 3 33 0 3 6 99 99 1 6 1 6 1 22222222 3 1 1 6 1111 6 5 000 7 1 555555555 5 5 1 77 7 77 1 2 8 3333333333333333333333333333333333333 111 8 0 8 55 3333333 3 8 0 2 3333333 6 6 77 5 111111 77 5 1 8 8 11 99 7 3 6 99 99 999 1 66 0 55 88888888 5 0 555 4 666666666666 3 3 77 4 0 3 555 2 2 2 5 33 00000000 77777 6 3 6666 3 3 44444444 55 111 4 4 8 4 4
lowQualScore : . . . . . ... . . . .... .. . . . . . . . . .. .. . . ....... . ...... .. . ............ ....... . . . . . . . . . . . . . . ... ... . . . . . . . . . . . . . . .... . ... . . . . . .. .. . . . . . . . ....................... . . . . . . .......................... . . . .. ... . . . . .. . . . . . .. .. . .... ............ ............. .. ............ .. . . . .. . .. . . . .. . . .... . . . . .... . . ... .. ..... . .. . . . . ...... .. . .. . ...... . . . . .................. . . . . . . . . .. . .. . .... . .. . . .. .... . . ...... . . . . ....... . .. . .. . . . .. .. . . . . . ........ . . . . .... . . ... . . ......... . . . .. . .. . . . ..................................... ... . . . .. ....... . . . . ....... . . .. . ...... .. . . . . .. .. . . . .. .. ... . .. . .. ........ . . ... . ............ . . .. . . . ... . . . . .. ........ ..... . . .... . . ........ .. ... . . . . .
lowQualScore : 5 0 5 0 0 000 5 5 5 5555 00 0 0 5 0 5 5 0 0 00 00 5 5 7777777 3 555555 55 5 000000000000 5555555 0 0 0 0 0 0 0 0 8 5 0 5 5 2 000 555 0 0 0 0 0 2 2 0 5 2 0 2 5 0 0000 0 888 0 0 5 2 0 33 77 0 7 3 3 0 3 3 33333333333333333333333 3 3 3 7 3 3 77777777777777777777777777 3 3 7 33 333 3 3 0 0 77 3 3 7 3 7 33 33 7 0000 333333333333 0000000000000 33 777777777777 33 7 3 3 33 3 33 3 3 3 77 0 0 2222 0 2 0 0 0000 2 0 555 55 22222 0 00 8 0 8 0 888888 55 0 88 0 222222 0 0 0 2 000000000000000000 2 0 8 0 0 8 0 4 44 4 00 0 0000 8 55 5 5 22 0000 8 2 000000 5 2 0 0 2222222 2 55 2 88 0 2 7 22 22 7 7 0 7 7 55555555 2 0 0 7 0000 7 7 000 1 4 333333333 7 0 3 99 9 11 5 5 0 0000000000000000000000000000000000000 888 0 8 0 88 6666666 8 0 3 5 7777777 7 7 99 7 777777 99 7 4 0 0 00 22 5 2 7 22 22 444 7 77 3 11 11111111 0 1 666 4 333333333333 1 1 33 0 8 1 444 9 9 9 7 99 44444444 11111 2 1 5555 1 1 55555555 55 000 0 0 0 0 4
consensus : NTCATACTTAAACAAATCACTAACTCCTTCGGTATATCCCGATATGTTGGAAAAAAGNAAANTGTCGTACCCGTTCATAAAAAGATTGTGAAAATATCATAACATAATTACAGGCCAATTTCTTTAATTAGCACATATAGTTGGGANNGTAATGGGAAAGTCGTGTTTATAATCACTTGATNAGTTACATATANGAAAATCAAATCTTGTGCAAAAATCAGATCAGGTTTTNTTCAAGGTGACTCCACTGTANANNAACCTTTGGACATTTCTAANNATATTGGTAAAGCTATTTGATCAGGGTAAAGAAGTAAGGGGCG----TTTTTTGTGACATAAGTAAAGCATTCGACAGGGTTTGGCATGCTGGATTAATTTTTAAATTATTCCGGATCCAGTCCGGTTTTTCAGGAAAGGTTNTGTCTTGGCTAGAGGACTGCATGTACATGTATATACATGTATACCCAATNGAAGCNAAAGAGTGGTAATCAACTCTAAATCATNTAAATGGGTAAGAATAAACGCTGGAGTTCCACAAGGTTCTGTATNAGGTCCTCTTTTGTTTCTTATTTTTATAAACGACAT-TGTCCTTGACATAAAA-T-GTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTT-TATATATCGTTGTTGAAAA-CCCACAATCTGCAAGCAATATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGNC-CGTCGAATTCAAT-CCG-T-CAAAACAGAATCCTTGATAATAAGCAAC-AAACGCACTCAAACTACAC-ATCCAGA--TTTGTT-CTTAAACAANTGCATCATAAAAAAAT-GTTGAGAGTCATA-AGCAT-CTAG-----------------------GCGTTACATTT-TCCCAAAAT-GGGTTAT-GGT-TTCTCAT-GTAAACTCTGTTC--------TCT------CTC---TT-CGATTAAATATGCTACGTAAAATAAGTTATATACTAGATAGAAGATCATT--AGAAAAGTTTTA---TTTATCTT-TTAT-TAGACNTGTCCTTNAATATGCAGAA-ATAATTTTGGGACAATATTTCTG-TCG--AAC--TCGGTCAAAAACTTGAACGGTT-AAAC--AGGAAGC---CGCTAGAATCGTATC---GG--GT-A-AAAA--TACTCAAA-TATT--TAAT--CTTTACGATGAACTGGGCTGGG-AACCCC-TTGAAAACAGAAGAAAAAAAA--CCATAAAATT-ATACAT--TTTTCATAAAATG-GTCCATCG--CAAGTTCNTG-AGTATC-TAC-GCAACCTTGTCCCTCCAAAAATNT-GCGAATCCCAC---CACAT-ATA---CAAGA---GCGGACAA-CATAAA-TCTAACCAAATACAAAA-CTACGCACTACAAAAATTCATTT-CT------ACC-ATCAACNATT--TC-CT----T-GGAA-CAGT-CTCCCTGATGAT-GTAA--AAAAAGGA----CC--TCAATATCGCA-CCTTAAACGT-ATTTAAATGAAA-CACCA--AANCCC----CTCC-CACCGTACTTCCTCACAGGCTCAG-GGCAAGTT---CAAATTTTACAT-ACCC-TCTACGTATGAATTGCAGTTCACTCAANTACC-ATTTATTTT--CTA-AAAACATTGTAGATAGTCCTTTATGTGTTTG--GGCAAGATAG-AAGACACCAAACA-CT--ATTT-CCTAGAATGTCCTCTGTA-CAATCAACTTAGGCGAAAAT-ATCTTTCAAATCTA-GGCAAACAATGTTAACACNAACCTACT-G-CT-CTTTGGAGACCCAAACCTATCAGTATCTC-AAAACA---AAT-TATATTTCAATC----A----GTAC-ATAAATAT--ATCAAGCAAAGTAA-GAGATTCAATTCCTGAG-TGTTATGTATTGTAAT------AG-----TGC-TA-----------------TTTTT--CTGT-AATA-GCGACAAT------AAT-TTCATACGAC-CTA-C-AC-AC-GTCATCATCACCCT--TA-T----T-TA--TAT-GTTTC-GCA-TT-TT--TGTA--TTNGTATTTATT-GTA--CTC--AAAATTCCATCG-AGCTTAAAGAAGA-TTT--------AT-TATT---ATT-ATTATATGTTACATA-------ATAGG-AGAC-GGATTTACATAAGTC--TTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------ATAC--T---TGTTT-CAA-CGTC-AAT-AAATACA-GTTTAAAC
Reference ( family-374 ) : NTCATACTTAAACAAATCACTAACTCCTTCGGTATATCCCGATATGTTGGAAAAAAGNAAANTGTCGTACCCGTTCATAAAAAGATTGTGAAAATATCATAACATAATTACAGGCCAATTTCTTTAATTAGCACATATAGTTGGGANNGTAATGGGAAAGTCGTGTTTATAATCACTTGATNAGTTACATATANGAAAATCAAATCTTGTGCAAAAATCAGATCAGGTTTTNTTCAAGGTGACTCCACTGTANANNAACCTTTGGACATTTCTAANNATATTGGTAAAGCTATTTGATCAGGGTAAAGAAGTAAGGGGCG----TTTTTTGTGACATAAGTAAAGCATTCGACAGGGTTTGGCATGCTGGATTAATTTTTAAATTATTCCGGATCCAGTCCGGTTTTTCAGGAAAGGTTNTGTCTTGGCTAGAGGACTGCATGTACATGTATATACATGTATACCCAATNGAAGCNAAAGAGTGGTAATCAACTCTAAATCATNTAAATGGGTAAGAATAAACGCTGGAGTTCCACAAGGTTCTGTATNAGGTCCTCTTTTGTTTCTTATTTTTATAAACGACAT-TGTCCTTGACATAAAA-T-GTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTT-TATATATCGTTGTTGAAAA-CCCACAATCTGCAAGCAATATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGNC-CGTCGAATTCAAT-CCG-T-CAAAACAGAATCCTTGATAATAAGCAAC-AAACGCACTCAAACTACAC-ATCCAGA--TTTGTT-CTTAAACAANTGCATCATAAAAAAAT-GTTGAGAGTCATA-AGCAT-CTAG-----------------------GCGTTACATTT-TCCCAAAAT-GGGTTAT-GGT-TTCTCAT-GTAAACTCTGTTC--------TCT------CTC---TT-CGATTAAATATGCTACGTAAAATAAGTTATATACTAGATAGAAGATCATT--AGAAAAGTTTTA---TTTATCTT-TTAT-TAGACNTGTCCTTNAATATGCAGAA-ATAATTTTGGGACAATATTTCTG-TCG--AAC--TCGGTCAAAAACTTGAACGGTT-AAAC--AGGAAGC---CGCTAGAATCGTATC---GG--GT-A-AAAA--TACTCAAA-TATT--TAAT--CTTTACGATGAACTGGGCTGGG-AACCCC-TTGAAAACAGAAGAAAAAAAA--CCATAAAATT-ATACAT--TTTTCATAAAATG-GTCCATCG--CAAGTTCNTG-AGTATC-TAC-GCAACCTTGTCCCTCCAAAAATNT-GCGAATCCCAC---CACAT-ATA---CAAGA---GCGGACAA-CATAAA-TCTAACCAAATACAAAA-CTACGCACTACAAAAATTCATTT-CT------ACC-ATCAACNATT--TC-CT----T-GGAA-CAGT-CTCCCTGATGAT-GTAA--AAAAAGGA----CC--TCAATATCGCA-CCTTAAACGT-ATTTAAATGAAA-CACCA--AANCCC----CTCC-CACCGTACTTCCTCACAGGCTCAG-GGCAAGTT---CAAATTTTACAT-ACCC-TCTACGTATGAATTGCAGTTCACTCAANTACC-ATTTATTTT--CTA-AAAACATTGTAGATAGTCCTTTATGTGTTTG--GGCAAGATAG-AAGACACCAAACA-CT--ATTT-CCTAGAATGTCCTCTGTA-CAATCAACTTAGGCGAAAAT-ATCTTTCAAATCTA-GGCAAACAATGTTAACACNAACCTACT-G-CT-CTTTGGAGACCCAAACCTATCAGTATCTC-AAAACA---AAT-TATATTTCAATC----A----GTAC-ATAAATAT--ATCAAGCAAAGTAA-GAGATTCAATTCCTGAG-TGTTATGTATTGTAAT----TCAG-----TGT-TA-----------------TTTTT--CTGT-AATA-GCGACAAT------AAT-TTCATACGAC-CTA-C-AC-AC-GTCATCATCACCCT--TA-T----T-TA--TAT-GTTTC-GCA-TT-TT--TGTA--TTNGTATTTATT-GTA--CTC--AAAATTCCATCG-AGCTTAAAGAAGA-TTT--------AT-TATT---ATT-ATTATATGTTACATA-------ATAGG-AGAC-GGATTTACATAAGTC--TTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------ATAC--T---TGTTT-CAA-CGTC-AAT-AAATACA-GTTTAAAC
gi|1 : TCATATTTAA-CAAATCA-TAACTCTTTCAGTATATCCCGATATGTTGGAAAAAAGCAAATTGTC---CCCGTTCATAAAAAAAT-GTGAAAA-ATCATAACATAATTACAGGCCAATTTCTTTAATTAGCACA----GTTGGGAAGGTAATGGAAAAGT-GTGTTTATAATCACTTGATAAAT-ACATATACGAAAATCAAATTTTGTGCAAAA-TCAAATCAGGTTTTTTTCAAGGTGACTCCACTGTAAATCAACTTTTGGATATTTCTAACGA-ATTGGTAAAGCTATTTGATCAGGGTAAAGAAGTAAGGAGCG----TTTTTTGTTACATAAGTAAAGCATTCGACAGGGTT-GGCATGCTGGATTACTTTTTAAATTATTCC------AGTCCGGTTTTTCAGGAAAAGT-ATGTCT-GGCTAGAGGACT------------ATAT-------TATCCAATAGAAGCCAAAGAGTAGTAATCAACTCTAAATCATCTAAATGGGTAA-AATAAACGCTGGAGTTC-ACAAGGTTCT-TATGAG-TCCTCTTTTGTTTCTTATCTTTATAAACGACAT-T-TCCTTGACATAAAA-TTGTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTT-TATATATCGTTGTTGAAAAACCCACAATCTGCAAGCAA-ATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGGCTCGTCGAATTCAAT-CCG-T-CAAAACAGAATCCTTGATAATAAGCAAC-AAACGCACTCAA--TACAC-ATCCAGA--CTTGT--CTTAAACAACTGCATCATAAAAAAAT-GTTGAGAATCATA-AGCAT-CTAG-----------------------GCGTTACATTT-TCCCAAAAT-GGGTTAT-GGT-TTCTCAT-GTAAACTCTATTC--------TCT-------------T-CGATTAAATATGCTACGTAAAATAAGTTATATACT---TAGAA--TCATT--AGAAAAGTTTTA---TTTATCCT-TTATCTAGACCTGTCCTTGAATATGCAGAA--TAATTTTGGGACAATATTTCTGCTTGTCAAC--TCAGTCAAAAACTTTGACGGTT-AAACCCAGGAAGCGCTCGCTAGAATCGTATCCGGGG--GT-ACAAAA--TAC--AAA-TATT--TAAT--CTTTACAATGAACTGGGCTGTG-AACCCC-TTGAAAACAGAAGAAAAAAAA--CCATAAAATT-ATACAT--TTT-CATAAAATG-GTCCCTCG--CAAGTTCCTG-AGTATC-TAC-GCAACCTTGTCCC-CCAAAAATTT-GCGAATCTCAA---CACAC-ATAACACAAGACAAGCGGACAA-CATAAA-TCTAACCAAATACAAAA-CTACGCACTACAAAAATTCATTTACT------AC--ATCAACAATT--TC-CT----T-GGAA-CAGT-CTCCCTGATGATTGTAA--AAAAAGAA----CCCTTCAATATCACA-CCTTAAACGT-ATTTAAATAAAA-CATCA--AAACCC----CTCC-CACCATACTTCCTCACAGGCTCAG-CGCAAGTT---CAAATTTTACAT-ACCC-TCTACGTATGAATTGCAGTTCACTCAAATACC-ATTTATTTT--C-A-AAAACATTGTAGATAGTCCTTTATGTGTTTG--GGCAAGATAGAAAGACACC-AACA-CT--ATTT-CCTAG-ATCTCCTCTGTA-CAATCAACTTAGGCGAAAAT-ATCTTTC-AATCTATGACAAACAATGTCAACACTAACCTACT-GCCT-CTTTGGAGACCCAAA--TATCAGTATCTC-AAAACA---AAT-TATATTTCAATC----A----GTACTATAACTAT--ATCAAGCCAAGTAA-GAGATTCAATTCCTGAG-TGTTATGTATTGTAA--------------TGT-TA-----------------TTTTT--CTGT-AATA-GCGA-AAT------AAT-TTCATACGACACTA-C-AC-AC-ATCATCATCACCCT--TA-T----T-TA--TAT-GTTTC-GCA-GT-TT--TGTA--TTTGTATTT-TT-GTA--CTC--AGAATTTCATCATAGCTTAAAGAAGA-TTT--------AT-TATT---ATT-ATTATATGTTACATACACAAATGTAGG-AGAC-AGATTTACATAAGTC--TTTCGAAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGA-T-TGTA--------ATAC--T---TGTTT-CAA-CATC-AAT-AAATACA-GTTTAAAC
gi|10 : aTA-------A-AGG-AGAC-AGATTTACATAAGTC--GTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--TAAATTTATA-----ATG-ATGCATTG-TT----TGT-T-TGTA--------TCAC--T---TGTTT-CAA-CGTC-AAT-AAATACA-GTTTAAAC
gi|11 : ccataacttataaaagaagattG-AGAC-GGATTTATATATGTC--ATT-GTAC-TTGTTTT---TGAAT-CCTAA-TGTAGTT--------A-----ACGTATGTACTC-TT----TAT-T-caaatgtgtaacaacagttttatttttatatgaaagtttttatttactcggtcagtatacgt
gi|12 : tcacatagccccattaccattttatttcgtttatttttctgtatacttatgtttacacatacatgttcctatcataactataggacgatttAATA-CTGAATCTACTTAGAA-GTCAATTGTA-TGATCAACTGAGGGGCAAAT-ATCTTTTGGGGC-A-AGCAAACA---TTAACACAAATCGA-T-G--------GGCAACCCAAACTTATCAGCATCCCCAAAACATATAAT-TATAT--CAATC----A----GTGC-ATAAATAT--AT-ATTCAAAGTAA-
gi|13 : AAA-TTT--------AT-TATT---ATTAATTATATGTTA-AC--------ATAGGCAGAC-AGATTGACATAAGTC--TTTCGAAC-TTGTTGC---TGAAT-CC--A-T-T---T--------A-----ATG-ATG-ATTGCTC----TGT-TATGTA--------ATAC--TA--TGTTA-CAA-AGTC-AATAAAATA-A-GTTTAAAC
gi|14 : AAATTTAATCG-ACCTAAAATATGAATTT--------AT-TATG---ATT-ATTATA-GTTACATA-----------G-AGAC-A-ATTT-CAAAAGTC--TTT--TAC-TTGTT-C---TGAATTCCT-A-T--A--T--------A-----ATG-ATGCATAG-T------GT-T-T-TA--------ATAC--T---TGTTT-CAA-CGTCTAAT-AAATACA-GTTTAAcaaaatagtttcat
gi|15 : G-AGAC-GGATTTACATAAGTC--TT--GTACCTTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----TTGAATGTATTC-GT----TAT-T-T
gi|16 : gaTAAGTC--TTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-A-----TG-TT----TGT-T-TGTA--------GTAC--T---TGTTT-CAA-CTTC-AAT-AAATATA-ATTTcccagcaaacagtcatcgacgtcatttcgacgtcagatttaagtcgttt
gi|17 : tttacatattaatATCAGGGTAAAGAAGTAAGGG-CGGTTTTTTTTTGTGACATAAGTAAAACATTCGACAGGGTTTGGCCTGCTAGATTAATTTTTAAATT
gi|18 : C-AAAACA---AATCTATATTTCAATCTGACA----GTAC-ATAAATATATATCAAGCAAAGTAA-GAGATTCAATTCtt
gi|2 : gacacgaaatatgtaaaCTTTTGTTTCTTATTTTTATAAAGGA-ATATGTC-TTGACATAAAAAT-GTAAAAGCATTGAAACTATTTGCAGATGAACATCTCACTTATATAT-TTGTTGT-GAAAA-CC-ACAATCTGCAAGCAATATTGCTAA-TAATGATCTTCAGAAAATCGAT-AGTGGTTGATAGCAATGG-C-TGTCGAATTTACTTCCG-T-CAAAACAGAATCCTTGATAA-AAGCAACCAAACGCA-TCAAACTACACGATCCAGAACTTTGTTTCTTAAACAAGTGCAT-ATAATAAAATTGTTAAAA-TCATAGAGCATTCTAGCGTTAACTTTTCCCAAGATGGTAGCGTTACATTTGTTCCAAAATTGGGTTATTGGTCTTCTCATTGTAA-CTCTGTTTCTACGAAATCT------TTC---TTGCGATTAAATATGCTAAGTAAAATAAGTTA-ATACTAGATAGAAGATCATT--AGAAATGTGTTGAATTTTATCTTGTTAT-TAGGATTGTCTTGAAATATGCAGAGTATAATTT-GGGATATGATTT-TG-TCG--AATAATCG-TCAAAAACTTGAACGGTTTAAAC--AGGAAGC---CGCTAGAATCGTATC---GGTGGTTA-AAAACTTACTCAAAATATTATTAATAACTTCACAATGAACTGGCATGGGTAACTCCGTTGAAAACAGGTAGGAAAAAA--CAATAAAATTTATACAT--TTTTCATAAAATGTGTCCATGGT-CAAGTTCGTGGAGT-TCATACAGCAACCTTGTCCTTCCAAAAATTTTGCGAATCTCAC----AC-T-ACA---CAAAAA--GTGGACAAGCATAAAATCTAAC-AAATACAAAAATTATGCACTACAAAG-TTCATTT-CT------ACCGATCAGCAATT--TT-CT----TTGGAATCAGTGCTCCCTGATGAT-GTAA--AA---GGA----CT--TCAAT--TGCAACCTTAAAT-C-ATTTAAATGAAA-AACCATAGAACTC----C-AC-CATC-TACTATCTCA-AGGCTCAGCGGCAAGTTGCATAGATTTTACATTACCG-TCTAGGTATGAATTGC-GTCTAATCAAATACCTATTTATTTTTTCTAGAAAACATTGTAGA-AGTCCTTTATGTGTTTGATGGCAAGATAG-AAGACACCAAACAGCT--ATTT--CTAGAATGTCCTCTGTATCAAGTAACTTAGGCGAAAATAATTTTTCAAAT-TA-GGCAAACAATGTTAAAACTACCTTACTGG-CTGCTTTGGAGACCCAAA-CTATCAGTATTGC-AAAACA---AAT-TATATTTCAATC----A----GTAC-AT-AATAT--AT-AATCAAAGTAACGAGATTCGATT-CTGCGTTGTTAT-TATTGTAAT-------G---------TA-----------------TTTTT--CTGT-AATA-GAGACAAT------AATGTTCATA-GAC-GTA-T-ACAACAGTCATCA-CTCCTT--CA-T----TGTA--TAT-GTTTCAGCA-TT-TT--TGTAATTTGGTATTTATT-GTA--CTC--ATTATTCCGT---AGTT--AAGAAT--TTT--------ATGTA-T---ATT-ATTATATG-TACA-A-------GTAGG-AGAA-CGATTTAACTAAGTCT-TTTCG-AA-TTGTTTCTATTGAAT---T-ATT-TA--T--------AACATTATG-ATGTATTG-TTGTGATGT-G-TG-A--------ATAC--CTTGTGTTTACAA-CGTCAAAT-TCATACA-GTTTAAAC
gi|20 : AAT-CGT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------GTAC--T---TGTTT-CAA-CGAC-AAT-AAATACA-GTTTAaacatgcaataagagttctttataggtgggacatttta
gi|21 : tcattctttaccatgtcTA--TTAGTATTTATT-GTA--CTT--AAAATTTCAT---AG------------TTT--------AT-TATT---ATT-ATTATATGTTAC----------GTAGG-AGAC-AGATTTACATAA
gi|22 : GG-AGAC-GGATTTACATAAGTC--TT--GTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----TTG-ATGTATTG-TT----CAT-T-T
gi|26 : -CATAAA-TCTAACCAAATACAAAA-TTACGCACTACAAAAATTCAcc
gi|3 : TCATACTTAAACAAATCACTAACTTCTTTGGTATATCCCGATATGT-GAAAAAAAAAAAAATGTCGTACCCGTTCATAAAAAGATTGTAAAAATATTATAAC-TAATTACAGGCCAATTTCTTTAATTAGCATATATAGTTGGGATCGTAATGGGAAAATCGTGTTTATAATCACTTGATTAGTTACATATAAGAAAATCAAATCTTGTGCAAAAATCAG-TCAGGTTTTATTCAAGGTGACTCTACTGTACAAAAACCTTTGGACATTTCTAAGTATATTGGTAAAGCTATT-GACCAGGATAGAGAAGTAGGGGAAG----TTTTTTGTGACATAAGTAAAGCATTCGACAGGATTTGGCATGTTGAATTAATATTTAAACTATTCCGGATCCAGTCCGGTTTTTCAGGAAAGGTTCTGTCTTGACTAGAGGACTGCATGTACATGTATATACATGTATACCCAATTGAAGCAAAAGAATGATAATCAACTCTAAATCATATAAATGGGTAAGAATAAACGTTGGAGTTCCACAAGGTTCTGTATTAGGTCCTCTTTTGTTTCTTAATTTTATAAA-GACAT-TGCCCTTGACATA-------TAA---TATT-AAACTATTTGCAGATAA-CA-CT-ACTT-TATATATCGCCGTTGATAA-TCCACAATTTGCAAGTAATATT-CTAAATAATGATCTTCAGAAAATCCACCAGTGGTCTA-AGCACTGGAT-GGTTGAATTCAAT-CCGCC-CAAACCATAATCATTAATAATAAGCAAA-AAACGCGCTCAAACTACAC-ATCCAGA--TTTATT-CTTAATCAATTGCATCAT-AAAAAAT-GTTGAGAGTCATA-AGCAT-CTAG-----------------------GCGTTACATTT-TCCCAAAAT-GGGTTAT-GGTGTTCTCAT-GTAAAATCTGTTC--------TCCCCAAAGCTCTTGTT-CGATTAAATATGCTACGTAAAATTACCTATCTACTAGATAGAAGATCATTAAAAAAAAGTTTTA---TTTATCTT-TTAT-TAGACATGTCCTTTAATATGCTGAA-ATAA-TTTGGGACAATATTTCTG-TTG--AAC--TCGGTCAAAAACTTGAACA----AAAC--A---------------AAACTTAT--------------AAA--TATTC-------T--TAAC--CTTTACGATGAACTGGGCTGGG-AGCCCC-TTGAAAACAGAAGAAAAAAAATTCCATAAAATT-ATACATACTTTTCATAAAATG-ATCCA-CGGCCAAGTTCATG-AGTATC-TAT-GAAACCTTGTTCCTCCAAAAATAT-GCGAATCCCACACACACATAATA---CA--A---GCGGACAA-CATAAT-TCTAACCAAATATAAAA-CTACTCACTACAAAAATTCATTT-CTACCAGAACC-ATCAACTATTTCTC-TT----T-GGAA-CAGT-CTCCCTGATGAT-GTAAATAAAAAAGAACCCCC--TCAATATCACA-CCTTAAACGTCACTTATATTAAA-TA-GA--AATCCC----CTCC-
gi|4 : CA-CCTTGAACGTGATTTAAATAAAAACATCA--AACCCC----CTCC--ACCATACTTCCTCACAGGCTCAC-AGCAAGTT---CAAATTTTACAT-ATTCGTCTACGTATGAATTGCAGTTCACTCAATTACC-ATTTATTTT--CTA-AAAACATTGTAGATAGTCCTTTATGTGTTTGT-GGCAAGATAG-AAGACACCAAACA-CT--ATTT-CCTAGAATGTCCTCTGTA-CAATCAACTCAGGCGAAAAT-ATCTTTCAAATCTA-G-CAAATAATGTCAACACTAACCTACT-G-CT-CTTTGGAGACCCAAACCTATCAGTATCTC-AAAACA---AATCTATATTTCAATC----ATGCAGTAC-ATAACTAT--ATCAAGCAAAGTAA-GAGATTCAATTCCTGAG-TGTTATGTATTGTAAT--------------GT-TA-----------------TTTTT--CTGT-TATA-GCGAAAAT------AAT-TTCATACGAC-CTA-TTAC-AC-ATCATCATCACTCT--TAAT----TGTA--TAT-GTTTCAGCA-TT-TT--TGTA--TTTGTATTTATT-GTA--CTC--AAAATTCCATCG---CTTAAAGAAGA-TGT--------AT-T---ATTATT-ATTATATGTTAC----------ATAGG-AGAC-AGATTTACATAAGTC--TTTCGAAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------ATAC--T---TGTTT-CAA-CGTC-AAT-AAAac
gi|5 : aAGTTCCTG-AGTAA---AT-GCAACATTGTTCCTTCTAAAATAT-ATGAATCCCACT--CGCAT-ATA---CAAGA-------------------------CAA-TATAAAA-CCACGCACTGCAAAAAGCAACTT-CT------ATC-CTCAAATATT--TCTCTGCGGT-GGAA-CAGT-CTTCCTGACGAT-G---------------------TCAAGATTG----CTTAA---T-A-------GAAA-TACCA--ACCCCCTCTGCTCCTCCCTGTACTTTCTCATAGGTTCAG-GACAAGTT-------TT----------------------AATTGCAGTTTACTCAATTACC-ATTTATTT----TG-AAA--ATCGTAG---------TATGCGT-----------ATAC-AAGACTCCAAACA-TT--ATT----TAGAACATCGTCTA----AATC----TAG---------------CAA-----------ACAATATTACCACGGAAATACA-G-CT-TTCTGGAGATCC--ACCT-----TA--TC-AAAA--------------GTCGACC----A----GTTC--T---TGT--ATCACACAAA---------------TCCTAAG-TTTTGTGTACTATAATGATACCAGGGCCCTGCATA-----------------TTAT----CGT-AA-A-ACGACGAGGAGGAAAGT-TTTACACGAC-----------C-ATCACCATCACCCTTGTA-T----A-TA--CAT-GTTTC-aatatcgtt
gi|6 : -CT--AATT-CTTAAAATGGTCATTGTA-CAATAAACTTTGACAAAAAT-ATCTTTCAAATCTA----------------CACAAACCTACT-G-CA-CTTTGGGAATCCAAACCTATCAATATCTC-AAAACA---AATATATATTTCAATC----A----GTAC-ATAAATAT--ATAAAGCAAAGTA--------------CTAAG-TATTATGTAACATAAT------AG-----TAC-TAAAGACTTGCATTTGTCCTTTTTTATTGTCAGTATACG-CAAG------A---TGCGAAAGAC-CCATC-AC-AC-GTCATCATCACCCT--TG-TATAAT-TACTTAT-GTTTC-aac
gi|6 : TC-ATTATACGT-ACATGTAAC---ATAGG-AGAT-GGATTTACATAAGTC--TTTTGTAC-TTGTCTC---CGAAT-CCT-A-T-CA--T--------A-----tccatagcttcattatacgtacatgtaacataggagatggatttacataagtcttttgtacttgtctccgaatcctatcata
gi|7 : ctaattcttaaaatggtcattgtacaataaactttgacaaaaatatctttcaaatctacacaaacctactgcactttgggaatccaaacctatcaatatctcaaaacaaatatatatttcaatcagtacataaatatataaagcaaagtactaagtattatgtaacataatagtactaaagacttgcatttgtccttttttattgtcagtatacgcaagatgcgaaagacccatcacacgtcatcatcacccttgtataattacttatgtttctccatagctTCACACGAC-CCA-CCAC-AC-GTCACCATCACCCT--TG-T----G-TA--TAC--TTTT-GTA-TT-TGCATGTA--TACGTATTTCTTTGTA--TTTTTAAAATTCCAT---AGCTTTAAGGGGA-GTT--------GT-TATC---ATT-ATCACATGTAACATA-------A---G-AGAC-GGATTTATATAATTC--TTTTGTAC-TTGTTTC---CGAAT-CCT-A-T-CA--T--------G-----CTA-ATATCATG-TT----TGT-A-GGTACAAGTATCATACCAT---TTCTT-CAATCAAT-AAT-AAATACAGGTTTAAGC
gi|8 : TTTTGTTTCTTATTTTTATAAACGACAT-TGTCCTTGACATAAAA-T-GTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTT-TATATATCGTTGTTGAAAA-CCCACAATCTGCAAGCAATATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGCT-CGTCGAATTTAAT-CCG-TCCAAAACAGAATCCTTGATAACAAGCAAC-AAACGCACTCAAACTACAC-ATCCaaaattt
gi|9 : --TA-T----T-TA--TATTGTTCA-GCAATTATT--TGTA--TT-GTATT-ATT-GTAAATTC--AAAATTCCA--GTAGTTTAGAGTAGA-TTTGGTTATTCAT-TATT---ATT-ATCAT-TGTTATATA--------TCGG-AGACAGGATTTACATAGATCATTTCCGTAC-TTGTGTC---TGAAT-CCT-G-TGTA--T--------A-----AT--ATGTATTG-TT----TGTGT-TGTA--------GCAC--T---TGTG--AAA-CGTC-AAT-AAATACA-GTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AACTAAGTATGGGTATAAAATTGGTCTTTGAAATAACTCTATAAATTTCAAATAACGGTACATAACAAAGACGTATCACACTT
Unaligned ( gi|23 ): TTTCTCTATTCCAACATTGTATCCTTTAAATGTAAATGCCAAGGTCTGTGGACAAAGCA
Unaligned ( gi|24 ): TAACCATTTTGAATACATGTGTGATTCTAACATGCATCTAAGATTTACCAAAATA
Unaligned ( gi|25 ): TTACCAATAATGAAACGTAACTTGTAAAATCGATAAACATTTTATTC
Unaligned ( gi|27 ): ACTAATTTAAGAAGGAGAGCCAGTAAATTTAAAGAACT
Unaligned ( gi|28 ): CGAAACACGGCCTTTTAAATACCACAATGACC
Alignments
lowQualScore : 11111111111111111111111 1111111111111111111111111111111111111
lowQualScore : 1 1 1 222 1 1 1 2222 1 1 1 1 1 1 2222222 222222 11 1 444444444444 3333333 1 1 1 1 1 111 111 1 1 1 1 1 1 1 1 1111 1 111 1 1 11 22 1 1 1 1 22222222222222222222222 1 1 1 2 1 99999999999999999999999999 11 222 1 1 22 1 11 11 1111 333333333333 6666666666666 11 333333333333 11 1 1 11 1 11 1 33 1 1111 1 1 3333 1 111 33333 1 222222 11 11 1 222222 1 1 1 555555555555555555 1 11 1111 11 1 11 2222 222222 1 2222222 11 22 1 22222222 1111 111 1 111111111 0000000000000000000000000000000000000 111 2222222 2222222 222222 1 11 222 11111111 333333333333 11111111 11111111 111
lowQualScore : 5 5 5 1 1 111 5 5 5 4444 22 5 1 5 1 5 5 1 1 22 22 5 5 8888888 7 888888 66 5 666666666666 2222222 1 1 1 5 5 5 1 5 8 2 0 2 2 3 777 777 0 0 0 0 0 3 3 0 2 3 0 3 2 0 9999 0 444 7 0 2 3 0 88 00 1 6 7 3 2 3 3 33333333333333333333333 3 3 3 6 3 7 99999999999999999999999999 7 7 6 88 333 3 3 1 1 00 7 7 6 3 0 88 88 6 8888 222222222222 8888888888888 88 000000000000 88 0 3 3 88 3 88 7 3 7 11 1 0 3333 0 3 1 0 0000 3 0 777 33 00000 8 99 0 8 0 0 888888 22 1 33 0 222222 0 0 0 3 222222222222222222 3 8 0 5 6 3 1 1 99 6 11 1 7777 0 00 0 6 00 4444 0 3 000000 2 3 1 0 1111111 3 22 3 33 0 3 6 99 99 1 6 1 6 1 22222222 3 1 1 6 1111 6 5 000 7 1 555555555 5 5 1 77 7 77 1 2 8 8888888888888888888888888888888888888 111 8 0 8 55 3333333 3 8 0 2 3333333 6 6 77 5 111111 77 5 1 8 8 11 99 7 3 6 99 99 999 1 66 0 55 88888888 5 0 555 4 666666666666 3 3 77 4 0 3 555 2 2 2 5 33 00000000 77777 6 3 6666 3 3 44444444 55 111 4 4 8 4 4
lowQualScore : . . . . . ... . . . .... .. . . . . . . . . .. .. . . ....... . ...... .. . ............ ....... . . . . . . . . . . . . . . ... ... . . . . . . . . . . . . . . .... . ... . . . . . .. .. . . . . . . . ....................... . . . . . . .......................... . . . .. ... . . . . .. . . . . . .. .. . .... ............ ............. .. ............ .. . . . .. . .. . . . .. . . .... . . . . .... . . ... .. ..... . .. . . . . ...... .. . .. . ...... . . . . .................. . . . . . . . . .. . .. . .... . .. . . .. .... . . ...... . . . . ....... . .. . .. . . . .. .. . . . . . ........ . . . . .... . . ... . . ......... . . . .. . .. . . . ..................................... ... . . . .. ....... . . . . ....... . . .. . ...... .. . . . . .. .. . . . .. .. ... . .. . .. ........ . . ... . ............ . . .. . . . ... . . . . .. ........ ..... . . .... . . ........ .. ... . . . . .
lowQualScore : 5 0 5 0 0 000 5 5 5 5555 00 0 0 5 0 5 5 0 0 00 00 5 5 7777777 3 555555 55 5 000000000000 5555555 0 0 0 0 0 0 0 0 8 5 0 5 5 2 000 555 0 0 0 0 0 2 2 0 5 2 0 2 5 0 0000 0 888 0 0 5 2 0 33 77 0 7 3 3 0 3 3 33333333333333333333333 3 3 3 7 3 3 77777777777777777777777777 3 3 7 33 333 3 3 0 0 77 3 3 7 3 7 33 33 7 0000 333333333333 0000000000000 33 777777777777 33 7 3 3 33 3 33 3 3 3 77 0 0 2222 0 2 0 0 0000 2 0 555 55 22222 0 00 8 0 8 0 888888 55 0 88 0 222222 0 0 0 2 000000000000000000 2 0 8 0 0 8 0 4 44 4 00 0 0000 8 55 5 5 22 0000 8 2 000000 5 2 0 0 2222222 2 55 2 88 0 2 7 22 22 7 7 0 7 7 55555555 2 0 0 7 0000 7 7 000 1 4 333333333 7 0 3 99 9 11 5 5 0 6666666666666666666666666666666666666 888 0 8 0 88 6666666 8 0 3 5 7777777 7 7 99 7 777777 99 7 4 0 0 00 22 5 2 7 22 22 444 7 77 3 11 11111111 0 1 666 4 333333333333 1 1 33 0 8 1 444 9 9 9 7 99 44444444 11111 2 1 5555 1 1 55555555 55 000 0 0 0 0 4
consensus : NTCATACTTAAACAAATCACTAACTCCTTCGGTATATCCCGATATGTTGGAAAAAAGNAAANTGTCGTACCCGTTCATAAAAAGATTGTGAAAATATCATAACATAATTACAGGCCAATTTCTTTAATTAGCACATATAGTTGGGANNGTAATGGGAAAGTCGTGTTTATAATCACTTGATNAGTTACATATANGAAAATCAAATCTTGTGCAAAAATCAGATCAGGTTTTNTTCAAGGTGACTCCACTGTANANNAACCTTTGGACATTTCTAANNATATTGGTAAAGCTATTTGATCAGGGTAAAGAAGTAAGGGGCG----TTTTTTGTGACATAAGTAAAGCATTCGACAGGGTTTGGCATGCTGGATTAATTTTTAAATTATTCCGGATCCAGTCCGGTTTTTCAGGAAAGGTTNTGTCTTGGCTAGAGGACTGCATGTACATGTATATACATGTATACCCAATNGAAGCNAAAGAGTGGTAATCAACTCTAAATCATNTAAATGGGTAAGAATAAACGCTGGAGTTCCACAAGGTTCTGTATNAGGTCCTCTTTTGTTTCTTATTTTTATAAACGACAT-TGTCCTTGACATAAAA-T-GTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTT-TATATATCGTTGTTGAAAA-CCCACAATCTGCAAGCAATATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGNC-CGTCGAATTCAAT-CCG-T-CAAAACAGAATCCTTGATAATAAGCAAC-AAACGCACTCAAACTACAC-ATCCAGA--TTTGTT-CTTAAACAANTGCATCATAAAAAAAT-GTTGAGAGTCATA-AGCAT-CTAG-----------------------GCGTTACATTT-TCCCAAAAT-GGGTTAT-GGT-TTCTCAT-GTAAACTCTGTTC--------TCT------CTC---TT-CGATTAAATATGCTACGTAAAATAAGTTATATACTAGATAGAAGATCATT--AGAAAAGTTTTA---TTTATCTT-TTAT-TAGACNTGTCCTTNAATATGCAGAA-ATAATTTTGGGACAATATTTCTG-TCG--AAC--TCGGTCAAAAACTTGAACGGTT-AAAC--AGGAAGC---CGCTAGAATCGTATC---GG--GT-A-AAAA--TACTCAAA-TATT--TAAT--CTTTACGATGAACTGGGCTGGG-AACCCC-TTGAAAACAGAAGAAAAAAAA--CCATAAAATT-ATACAT--TTTTCATAAAATG-GTCCATCG--CAAGTTCNTG-AGTATC-TAC-GCAACCTTGTCCCTCCAAAAATNT-GCGAATCCCAC---CACAT-ATA---CAAGA---GCGGACAA-CATAAA-TCTAACCAAATACAAAA-CTACGCACTACAAAAATTCATTT-CT------ACC-ATCAACNATT--TC-CT----T-GGAA-CAGT-CTCCCTGATGAT-GTAA--AAAAAGGA----CC--TCAATATCGCA-CCTTAAACGT-ATTTAAATGAAA-CACCA--AANCCC----CTCC-CACCGTACTTCCTCACAGGCTCAG-GGCAAGTT---CAAATTTTACAT-ACCC-TCTACGTATGAATTGCAGTTCACTCAANTACC-ATTTATTTT--CTA-AAAACATTGTAGATAGTCCTTTATGTGTTTG--GGCAAGATAG-AAGACACCAAACA-CT--ATTT-CCTAGAATGTCCTCTGTA-CAATCAACTTAGGCGAAAAT-ATCTTTCAAATCTA-GGCAAACAATGTTAACACNAACCTACT-G-CT-CTTTGGAGACCCAAACCTATCAGTATCTC-AAAACA---AAT-TATATTTCAATC----A----GTAC-ATAAATAT--ATCAAGCAAAGTAA-GAGATTCAATTCCTGAG-TGTTATGTATTGTAAT------AG-----TGC-TA-----------------TTTTT--CTGT-AATA-GCGACAAT------AAT-TTCATACGAC-CTA-C-AC-AC-GTCATCATCACCCT--TA-T----T-TA--TAT-GTTTC-GCA-TT-TT--TGTA--TTNGTATTTATT-GTA--CTC--AAAATTCCATCG-AGCTTAAAGAAGA-TTT--------AT-TATT---ATT-ATTATATGTTACATA-------ATAGG-AGAC-GGATTTACATAAGTC--TTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------ATAC--T---TGTTT-CAA-CGTC-AAT-AAATACA-GTTTAAAC
Reference ( family-374 ) : NTCATACTTAAACAAATCACTAACTCCTTCGGTATATCCCGATATGTTGGAAAAAAGNAAANTGTCGTACCCGTTCATAAAAAGATTGTGAAAATATCATAACATAATTACAGGCCAATTTCTTTAATTAGCACATATAGTTGGGANNGTAATGGGAAAGTCGTGTTTATAATCACTTGATNAGTTACATATANGAAAATCAAATCTTGTGCAAAAATCAGATCAGGTTTTNTTCAAGGTGACTCCACTGTANANNAACCTTTGGACATTTCTAANNATATTGGTAAAGCTATTTGATCAGGGTAAAGAAGTAAGGGGCG----TTTTTTGTGACATAAGTAAAGCATTCGACAGGGTTTGGCATGCTGGATTAATTTTTAAATTATTCCGGATCCAGTCCGGTTTTTCAGGAAAGGTTNTGTCTTGGCTAGAGGACTGCATGTACATGTATATACATGTATACCCAATNGAAGCNAAAGAGTGGTAATCAACTCTAAATCATNTAAATGGGTAAGAATAAACGCTGGAGTTCCACAAGGTTCTGTATNAGGTCCTCTTTTGTTTCTTATTTTTATAAACGACAT-TGTCCTTGACATAAAA-T-GTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTT-TATATATCGTTGTTGAAAA-CCCACAATCTGCAAGCAATATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGNC-CGTCGAATTCAAT-CCG-T-CAAAACAGAATCCTTGATAATAAGCAAC-AAACGCACTCAAACTACAC-ATCCAGA--TTTGTT-CTTAAACAANTGCATCATAAAAAAAT-GTTGAGAGTCATA-AGCAT-CTAG-----------------------GCGTTACATTT-TCCCAAAAT-GGGTTAT-GGT-TTCTCAT-GTAAACTCTGTTC--------TCT------CTC---TT-CGATTAAATATGCTACGTAAAATAAGTTATATACTAGATAGAAGATCATT--AGAAAAGTTTTA---TTTATCTT-TTAT-TAGACNTGTCCTTNAATATGCAGAA-ATAATTTTGGGACAATATTTCTG-TCG--AAC--TCGGTCAAAAACTTGAACGGTT-AAAC--AGGAAGC---CGCTAGAATCGTATC---GG--GT-A-AAAA--TACTCAAA-TATT--TAAT--CTTTACGATGAACTGGGCTGGG-AACCCC-TTGAAAACAGAAGAAAAAAAA--CCATAAAATT-ATACAT--TTTTCATAAAATG-GTCCATCG--CAAGTTCNTG-AGTATC-TAC-GCAACCTTGTCCCTCCAAAAATNT-GCGAATCCCAC---CACAT-ATA---CAAGA---GCGGACAA-CATAAA-TCTAACCAAATACAAAA-CTACGCACTACAAAAATTCATTT-CT------ACC-ATCAACNATT--TC-CT----T-GGAA-CAGT-CTCCCTGATGAT-GTAA--AAAAAGGA----CC--TCAATATCGCA-CCTTAAACGT-ATTTAAATGAAA-CACCA--AANCCC----CTCC-CACCGTACTTCCTCACAGGCTCAG-GGCAAGTT---CAAATTTTACAT-ACCC-TCTACGTATGAATTGCAGTTCACTCAANTACC-ATTTATTTT--CTA-AAAACATTGTAGATAGTCCTTTATGTGTTTG--GGCAAGATAG-AAGACACCAAACA-CT--ATTT-CCTAGAATGTCCTCTGTA-CAATCAACTTAGGCGAAAAT-ATCTTTCAAATCTA-GGCAAACAATGTTAACACNAACCTACT-G-CT-CTTTGGAGACCCAAACCTATCAGTATCTC-AAAACA---AAT-TATATTTCAATC----A----GTAC-ATAAATAT--ATCAAGCAAAGTAA-GAGATTCAATTCCTGAG-TGTTATGTATTGTAAT------AG-----TGC-TA-----------------TTTTT--CTGT-AATA-GCGACAAT------AAT-TTCATACGAC-CTA-C-AC-AC-GTCATCATCACCCT--TA-T----T-TA--TAT-GTTTC-GCA-TT-TT--TGTA--TTNGTATTTATT-GTA--CTC--AAAATTCCATCG-AGCTTAAAGAAGA-TTT--------AT-TATT---ATT-ATTATATGTTACATA-------ATAGG-AGAC-GGATTTACATAAGTC--TTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------ATAC--T---TGTTT-CAA-CGTC-AAT-AAATACA-GTTTAAAC
gi|1 : TCATATTTAA-CAAATCA-TAACTCTTTCAGTATATCCCGATATGTTGGAAAAAAGCAAATTGTC---CCCGTTCATAAAAAAAT-GTGAAAA-ATCATAACATAATTACAGGCCAATTTCTTTAATTAGCACA----GTTGGGAAGGTAATGGAAAAGT-GTGTTTATAATCACTTGATAAAT-ACATATACGAAAATCAAATTTTGTGCAAAA-TCAAATCAGGTTTTTTTCAAGGTGACTCCACTGTAAATCAACTTTTGGATATTTCTAACGA-ATTGGTAAAGCTATTTGATCAGGGTAAAGAAGTAAGGAGCG----TTTTTTGTTACATAAGTAAAGCATTCGACAGGGTT-GGCATGCTGGATTACTTTTTAAATTATTCC------AGTCCGGTTTTTCAGGAAAAGT-ATGTCT-GGCTAGAGGACT------------ATAT-------TATCCAATAGAAGCCAAAGAGTAGTAATCAACTCTAAATCATCTAAATGGGTAA-AATAAACGCTGGAGTTC-ACAAGGTTCT-TATGAG-TCCTCTTTTGTTTCTTATCTTTATAAACGACAT-T-TCCTTGACATAAAA-TTGTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTT-TATATATCGTTGTTGAAAAACCCACAATCTGCAAGCAA-ATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGGCTCGTCGAATTCAAT-CCG-T-CAAAACAGAATCCTTGATAATAAGCAAC-AAACGCACTCAA--TACAC-ATCCAGA--CTTGT--CTTAAACAACTGCATCATAAAAAAAT-GTTGAGAATCATA-AGCAT-CTAG-----------------------GCGTTACATTT-TCCCAAAAT-GGGTTAT-GGT-TTCTCAT-GTAAACTCTATTC--------TCT-------------T-CGATTAAATATGCTACGTAAAATAAGTTATATACT---TAGAA--TCATT--AGAAAAGTTTTA---TTTATCCT-TTATCTAGACCTGTCCTTGAATATGCAGAA--TAATTTTGGGACAATATTTCTGCTTGTCAAC--TCAGTCAAAAACTTTGACGGTT-AAACCCAGGAAGCGCTCGCTAGAATCGTATCCGGGG--GT-ACAAAA--TAC--AAA-TATT--TAAT--CTTTACAATGAACTGGGCTGTG-AACCCC-TTGAAAACAGAAGAAAAAAAA--CCATAAAATT-ATACAT--TTT-CATAAAATG-GTCCCTCG--CAAGTTCCTG-AGTATC-TAC-GCAACCTTGTCCC-CCAAAAATTT-GCGAATCTCAA---CACAC-ATAACACAAGACAAGCGGACAA-CATAAA-TCTAACCAAATACAAAA-CTACGCACTACAAAAATTCATTTACT------AC--ATCAACAATT--TC-CT----T-GGAA-CAGT-CTCCCTGATGATTGTAA--AAAAAGAA----CCCTTCAATATCACA-CCTTAAACGT-ATTTAAATAAAA-CATCA--AAACCC----CTCC-CACCATACTTCCTCACAGGCTCAG-CGCAAGTT---CAAATTTTACAT-ACCC-TCTACGTATGAATTGCAGTTCACTCAAATACC-ATTTATTTT--C-A-AAAACATTGTAGATAGTCCTTTATGTGTTTG--GGCAAGATAGAAAGACACC-AACA-CT--ATTT-CCTAG-ATCTCCTCTGTA-CAATCAACTTAGGCGAAAAT-ATCTTTC-AATCTATGACAAACAATGTCAACACTAACCTACT-GCCT-CTTTGGAGACCCAAA--TATCAGTATCTC-AAAACA---AAT-TATATTTCAATC----A----GTACTATAACTAT--ATCAAGCCAAGTAA-GAGATTCAATTCCTGAG-TGTTATGTATTGTAA--------------TGT-TA-----------------TTTTT--CTGT-AATA-GCGA-AAT------AAT-TTCATACGACACTA-C-AC-AC-ATCATCATCACCCT--TA-T----T-TA--TAT-GTTTC-GCA-GT-TT--TGTA--TTTGTATTT-TT-GTA--CTC--AGAATTTCATCATAGCTTAAAGAAGA-TTT--------AT-TATT---ATT-ATTATATGTTACATACACAAATGTAGG-AGAC-AGATTTACATAAGTC--TTTCGAAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGA-T-TGTA--------ATAC--T---TGTTT-CAA-CATC-AAT-AAATACA-GTTTAAAC
gi|10 : aTA-------A-AGG-AGAC-AGATTTACATAAGTC--GTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--TAAATTTATA-----ATG-ATGCATTG-TT----TGT-T-TGTA--------TCAC--T---TGTTT-CAA-CGTC-AAT-AAATACA-GTTTAAAC
gi|11 : ccataacttataaaagaagattG-AGAC-GGATTTATATATGTC--ATT-GTAC-TTGTTTT---TGAAT-CCTAA-TGTAGTT--------A-----ACGTATGTACTC-TT----TAT-T-caaatgtgtaacaacagttttatttttatatgaaagtttttatttactcggtcagtatacgt
gi|12 : tcacatagccccattaccattttatttcgtttatttttctgtatacttatgtttacacatacatgttcctatcataactataggacgatttAATA-CTGAATCTACTTAGAA-GTCAATTGTA-TGATCAACTGAGGGGCAAAT-ATCTTTTGGGGC-A-AGCAAACA---TTAACACAAATCGA-T-G--------GGCAACCCAAACTTATCAGCATCCCCAAAACATATAAT-TATAT--CAATC----A----GTGC-ATAAATAT--AT-ATTCAAAGTAA-
gi|13 : AAA-TTT--------AT-TATT---ATTAATTATATGTTA-AC--------ATAGGCAGAC-AGATTGACATAAGTC--TTTCGAAC-TTGTTGC---TGAAT-CC--A-T-T---T--------A-----ATG-ATG-ATTGCTC----TGT-TATGTA--------ATAC--TA--TGTTA-CAA-AGTC-AATAAAATA-A-GTTTAAAC
gi|14 : AAATTTAATCG-ACCTAAAATATGAATTT--------AT-TATG---ATT-ATTATA-GTTACATA-----------G-AGAC-A-ATTT-CAAAAGTC--TTT--TAC-TTGTT-C---TGAATTCCT-A-T--A--T--------A-----ATG-ATGCATAG-T------GT-T-T-TA--------ATAC--T---TGTTT-CAA-CGTCTAAT-AAATACA-GTTTAAcaaaatagtttcat
gi|15 : G-AGAC-GGATTTACATAAGTC--TT--GTACCTTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----TTGAATGTATTC-GT----TAT-T-T
gi|16 : gaTAAGTC--TTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-A-----TG-TT----TGT-T-TGTA--------GTAC--T---TGTTT-CAA-CTTC-AAT-AAATATA-ATTTcccagcaaacagtcatcgacgtcatttcgacgtcagatttaagtcgttt
gi|17 : tttacatattaatATCAGGGTAAAGAAGTAAGGG-CGGTTTTTTTTTGTGACATAAGTAAAACATTCGACAGGGTTTGGCCTGCTAGATTAATTTTTAAATT
gi|18 : C-AAAACA---AATCTATATTTCAATCTGACA----GTAC-ATAAATATATATCAAGCAAAGTAA-GAGATTCAATTCtt
gi|2 : gacacgaaatatgtaaaCTTTTGTTTCTTATTTTTATAAAGGA-ATATGTC-TTGACATAAAAAT-GTAAAAGCATTGAAACTATTTGCAGATGAACATCTCACTTATATAT-TTGTTGT-GAAAA-CC-ACAATCTGCAAGCAATATTGCTAA-TAATGATCTTCAGAAAATCGAT-AGTGGTTGATAGCAATGG-C-TGTCGAATTTACTTCCG-T-CAAAACAGAATCCTTGATAA-AAGCAACCAAACGCA-TCAAACTACACGATCCAGAACTTTGTTTCTTAAACAAGTGCAT-ATAATAAAATTGTTAAAA-TCATAGAGCATTCTAGCGTTAACTTTTCCCAAGATGGTAGCGTTACATTTGTTCCAAAATTGGGTTATTGGTCTTCTCATTGTAA-CTCTGTTTCTACGAAATCT------TTC---TTGCGATTAAATATGCTAAGTAAAATAAGTTA-ATACTAGATAGAAGATCATT--AGAAATGTGTTGAATTTTATCTTGTTAT-TAGGATTGTCTTGAAATATGCAGAGTATAATTT-GGGATATGATTT-TG-TCG--AATAATCG-TCAAAAACTTGAACGGTTTAAAC--AGGAAGC---CGCTAGAATCGTATC---GGTGGTTA-AAAACTTACTCAAAATATTATTAATAACTTCACAATGAACTGGCATGGGTAACTCCGTTGAAAACAGGTAGGAAAAAA--CAATAAAATTTATACAT--TTTTCATAAAATGTGTCCATGGT-CAAGTTCGTGGAGT-TCATACAGCAACCTTGTCCTTCCAAAAATTTTGCGAATCTCAC----AC-T-ACA---CAAAAA--GTGGACAAGCATAAAATCTAAC-AAATACAAAAATTATGCACTACAAAG-TTCATTT-CT------ACCGATCAGCAATT--TT-CT----TTGGAATCAGTGCTCCCTGATGAT-GTAA--AA---GGA----CT--TCAAT--TGCAACCTTAAAT-C-ATTTAAATGAAA-AACCATAGAACTC----C-AC-CATC-TACTATCTCA-AGGCTCAGCGGCAAGTTGCATAGATTTTACATTACCG-TCTAGGTATGAATTGC-GTCTAATCAAATACCTATTTATTTTTTCTAGAAAACATTGTAGA-AGTCCTTTATGTGTTTGATGGCAAGATAG-AAGACACCAAACAGCT--ATTT--CTAGAATGTCCTCTGTATCAAGTAACTTAGGCGAAAATAATTTTTCAAAT-TA-GGCAAACAATGTTAAAACTACCTTACTGG-CTGCTTTGGAGACCCAAA-CTATCAGTATTGC-AAAACA---AAT-TATATTTCAATC----A----GTAC-AT-AATAT--AT-AATCAAAGTAACGAGATTCGATT-CTGCGTTGTTAT-TATTGTAAT------G----------TA-----------------TTTTT--CTGT-AATA-GAGACAAT------AATGTTCATA-GAC-GTA-T-ACAACAGTCATCA-CTCCTT--CA-T----TGTA--TAT-GTTTCAGCA-TT-TT--TGTAATTTGGTATTTATT-GTA--CTC--ATTATTCCGT---AGTT--AAGAAT--TTT--------ATGTA-T---ATT-ATTATATG-TACA-A-------GTAGG-AGAA-CGATTTAACTAAGTCT-TTTCG-AA-TTGTTTCTATTGAAT---T-ATT-TA--T--------AACATTATG-ATGTATTG-TTGTGATGT-G-TG-A--------ATAC--CTTGTGTTTACAA-CGTCAAAT-TCATACA-GTTTAAAC
gi|20 : AAT-CGT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------GTAC--T---TGTTT-CAA-CGAC-AAT-AAATACA-GTTTAaacatgcaataagagttctttataggtgggacatttta
gi|21 : tcattctttaccatgtcTA--TTAGTATTTATT-GTA--CTT--AAAATTTCAT---AG------------TTT--------AT-TATT---ATT-ATTATATGTTAC----------GTAGG-AGAC-AGATTTACATAA
gi|22 : GG-AGAC-GGATTTACATAAGTC--TT--GTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----TTG-ATGTATTG-TT----CAT-T-T
gi|26 : -CATAAA-TCTAACCAAATACAAAA-TTACGCACTACAAAAATTCAcc
gi|3 : TCATACTTAAACAAATCACTAACTTCTTTGGTATATCCCGATATGT-GAAAAAAAAAAAAATGTCGTACCCGTTCATAAAAAGATTGTAAAAATATTATAAC-TAATTACAGGCCAATTTCTTTAATTAGCATATATAGTTGGGATCGTAATGGGAAAATCGTGTTTATAATCACTTGATTAGTTACATATAAGAAAATCAAATCTTGTGCAAAAATCAG-TCAGGTTTTATTCAAGGTGACTCTACTGTACAAAAACCTTTGGACATTTCTAAGTATATTGGTAAAGCTATT-GACCAGGATAGAGAAGTAGGGGAAG----TTTTTTGTGACATAAGTAAAGCATTCGACAGGATTTGGCATGTTGAATTAATATTTAAACTATTCCGGATCCAGTCCGGTTTTTCAGGAAAGGTTCTGTCTTGACTAGAGGACTGCATGTACATGTATATACATGTATACCCAATTGAAGCAAAAGAATGATAATCAACTCTAAATCATATAAATGGGTAAGAATAAACGTTGGAGTTCCACAAGGTTCTGTATTAGGTCCTCTTTTGTTTCTTAATTTTATAAA-GACAT-TGCCCTTGACATA-------TAA---TATT-AAACTATTTGCAGATAA-CA-CT-ACTT-TATATATCGCCGTTGATAA-TCCACAATTTGCAAGTAATATT-CTAAATAATGATCTTCAGAAAATCCACCAGTGGTCTA-AGCACTGGAT-GGTTGAATTCAAT-CCGCC-CAAACCATAATCATTAATAATAAGCAAA-AAACGCGCTCAAACTACAC-ATCCAGA--TTTATT-CTTAATCAATTGCATCAT-AAAAAAT-GTTGAGAGTCATA-AGCAT-CTAG-----------------------GCGTTACATTT-TCCCAAAAT-GGGTTAT-GGTGTTCTCAT-GTAAAATCTGTTC--------TCCCCAAAGCTCTTGTT-CGATTAAATATGCTACGTAAAATTACCTATCTACTAGATAGAAGATCATTAAAAAAAAGTTTTA---TTTATCTT-TTAT-TAGACATGTCCTTTAATATGCTGAA-ATAA-TTTGGGACAATATTTCTG-TTG--AAC--TCGGTCAAAAACTTGAACA----AAAC--A---------------AAACTTAT--------------AAA--TATTC-------T--TAAC--CTTTACGATGAACTGGGCTGGG-AGCCCC-TTGAAAACAGAAGAAAAAAAATTCCATAAAATT-ATACATACTTTTCATAAAATG-ATCCA-CGGCCAAGTTCATG-AGTATC-TAT-GAAACCTTGTTCCTCCAAAAATAT-GCGAATCCCACACACACATAATA---CA--A---GCGGACAA-CATAAT-TCTAACCAAATATAAAA-CTACTCACTACAAAAATTCATTT-CTACCAGAACC-ATCAACTATTTCTC-TT----T-GGAA-CAGT-CTCCCTGATGAT-GTAAATAAAAAAGAACCCCC--TCAATATCACA-CCTTAAACGTCACTTATATTAAA-TA-GA--AATCCC----CTCC-
gi|4 : CA-CCTTGAACGTGATTTAAATAAAAACATCA--AACCCC----CTCC--ACCATACTTCCTCACAGGCTCAC-AGCAAGTT---CAAATTTTACAT-ATTCGTCTACGTATGAATTGCAGTTCACTCAATTACC-ATTTATTTT--CTA-AAAACATTGTAGATAGTCCTTTATGTGTTTGT-GGCAAGATAG-AAGACACCAAACA-CT--ATTT-CCTAGAATGTCCTCTGTA-CAATCAACTCAGGCGAAAAT-ATCTTTCAAATCTA-G-CAAATAATGTCAACACTAACCTACT-G-CT-CTTTGGAGACCCAAACCTATCAGTATCTC-AAAACA---AATCTATATTTCAATC----ATGCAGTAC-ATAACTAT--ATCAAGCAAAGTAA-GAGATTCAATTCCTGAG-TGTTATGTATTGTAAT--------------GT-TA-----------------TTTTT--CTGT-TATA-GCGAAAAT------AAT-TTCATACGAC-CTA-TTAC-AC-ATCATCATCACTCT--TAAT----TGTA--TAT-GTTTCAGCA-TT-TT--TGTA--TTTGTATTTATT-GTA--CTC--AAAATTCCATCG---CTTAAAGAAGA-TGT--------AT-T---ATTATT-ATTATATGTTAC----------ATAGG-AGAC-AGATTTACATAAGTC--TTTCGAAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------ATAC--T---TGTTT-CAA-CGTC-AAT-AAAac
gi|5 : aAGTTCCTG-AGTAA---AT-GCAACATTGTTCCTTCTAAAATAT-ATGAATCCCACT--CGCAT-ATA---CAAGA-------------------------CAA-TATAAAA-CCACGCACTGCAAAAAGCAACTT-CT------ATC-CTCAAATATT--TCTCTGCGGT-GGAA-CAGT-CTTCCTGACGAT-G---------------------TCAAGATTG----CTTAA---T-A-------GAAA-TACCA--ACCCCCTCTGCTCCTCCCTGTACTTTCTCATAGGTTCAG-GACAAGTT-------TT----------------------AATTGCAGTTTACTCAATTACC-ATTTATTT----TG-AAA--ATCGTAG---------TATGCGT-----------ATAC-AAGACTCCAAACA-TT--ATT----TAGAACATCGTCTA----AATC----TAG---------------CAA-----------ACAATATTACCACGGAAATACA-G-CT-TTCTGGAGATCC--ACCT-----TA--TC-AAAA--------------GTCGACC----A----GTTC--T---TGT--ATCACACAAA---------------TCCTAAG-TTTTGTGTACTATAATGATACCAGGGCCCTGCATA-----------------TTAT----CGT-AA-A-ACGACGAGGAGGAAAGT-TTTACACGAC-----------C-ATCACCATCACCCTTGTA-T----A-TA--CAT-GTTTC-aatatcgtt
gi|6 : -CT--AATT-CTTAAAATGGTCATTGTA-CAATAAACTTTGACAAAAAT-ATCTTTCAAATCTA----------------CACAAACCTACT-G-CA-CTTTGGGAATCCAAACCTATCAATATCTC-AAAACA---AATATATATTTCAATC----A----GTAC-ATAAATAT--ATAAAGCAAAGTA--------------CTAAG-TATTATGTAACATAAT------AG-----TAC-TAAAGACTTGCATTTGTCCTTTTTTATTGTCAGTATACG-CAAG------A---TGCGAAAGAC-CCATC-AC-AC-GTCATCATCACCCT--TG-TATAAT-TACTTAT-GTTTC-aac
gi|6 : TC-ATTATACGT-ACATGTAAC---ATAGG-AGAT-GGATTTACATAAGTC--TTTTGTAC-TTGTCTC---CGAAT-CCT-A-T-CA--T--------A-----tccatagcttcattatacgtacatgtaacataggagatggatttacataagtcttttgtacttgtctccgaatcctatcata
gi|7 : ctaattcttaaaatggtcattgtacaataaactttgacaaaaatatctttcaaatctacacaaacctactgcactttgggaatccaaacctatcaatatctcaaaacaaatatatatttcaatcagtacataaatatataaagcaaagtactaagtattatgtaacataatagtactaaagacttgcatttgtccttttttattgtcagtatacgcaagatgcgaaagacccatcacacgtcatcatcacccttgtataattacttatgtttctccatagctTCACACGAC-CCA-CCAC-AC-GTCACCATCACCCT--TG-T----G-TA--TAC--TTTT-GTA-TT-TGCATGTA--TACGTATTTCTTTGTA--TTTTTAAAATTCCAT---AGCTTTAAGGGGA-GTT--------GT-TATC---ATT-ATCACATGTAACATA-------A---G-AGAC-GGATTTATATAATTC--TTTTGTAC-TTGTTTC---CGAAT-CCT-A-T-CA--T--------G-----CTA-ATATCATG-TT----TGT-A-GGTACAAGTATCATACCAT---TTCTT-CAATCAAT-AAT-AAATACAGGTTTAAGC
gi|8 : TTTTGTTTCTTATTTTTATAAACGACAT-TGTCCTTGACATAAAA-T-GTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTT-TATATATCGTTGTTGAAAA-CCCACAATCTGCAAGCAATATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGCT-CGTCGAATTTAAT-CCG-TCCAAAACAGAATCCTTGATAACAAGCAAC-AAACGCACTCAAACTACAC-ATCCaaaattt
gi|9 : --TA-T----T-TA--TATTGTTCA-GCAATTATT--TGTA--TT-GTATT-ATT-GTAAATTC--AAAATTCCA--GTAGTTTAGAGTAGA-TTTGGTTATTCAT-TATT---ATT-ATCAT-TGTTATATA--------TCGG-AGACAGGATTTACATAGATCATTTCCGTAC-TTGTGTC---TGAAT-CCT-G-TGTA--T--------A-----AT--ATGTATTG-TT----TGTGT-TGTA--------GCAC--T---TGTG--AAA-CGTC-AAT-AAATACA-GTT
blockSeqs : A C . A A GTA T T . TATA TC C T T A A . A C AA GT T . CGGTTT T GGATCC TC T GCATGTACATGT ACATGTA T A A G C G T G G C A G C A AT AAG G A T C A A T . C T G A C T ATG T CC T C C A G AC TT G C A T G G T CGTTAACTTTTCCCAAGATGGTA G T T C T A CTACGAAATCTTTCTTG T A G AA AAT G . T A TA T T C . . AA G GTTT AGGAAGC CGGTGGTTA CT TCAAAATATTAT AA T G TT T AC T T T GC G G TCA A T T T ACAC A A . AA AGT G AA A . ACCAGA CG A TC T GCGGT T G . T ATAAAAAAGAACCCCC A A G C T A G AC C TA A TCTG TC A C CG GCAT T TACCG G A A T TTTCTAG A AT T AT . A G GA AC T T G A G GGCAAG A G A G CTG C C TAT C T TGACA . A A AT C AC A C T TAGTACTAAAGACTTGCATTTGTCC TTA C T AC GGAGGAA A G C CTATT A A TG A ATAAT CT T A A A CA AT G A T AA TT CG C AA AA GGTTATTC G ATT A ATGTAACAT C A AT C C TAT T A T G GT AAATTTAT ACATT T C GTGA G A CAAGTATC CA TTG A T T A G
blockSeqs : AAG T C C . G C A T . . . . . . A T . C T . A C . CTC . TC C . C A . . T T . . . . . . . . . . G . . TCCCCAAAGCTCTTGTT . A G . . . . A T A . . . . . . . . A . . TCT . . . . . . T . . T A . ATC . T A . TC A . . AG GC . A . . . C T . . TT . . . T AAGGACT A . G G C T T A T . T . C G T A C T ATTCG C A T . TCTA A A T T . A . . C T . G . A ATTAGG A G T . CT C . . C T ATGCA . A A . C A G C . TGATACCAGGGCCCTGCATA T . . AA T A . C CCATC . . . . TG . . A . . . . A A . . . CG T TA A . . . . ACAT . . T C . . . . . G . . . A . . . . . . A . . A . .
blockSeqs : . . . G . . . . . . . . . . . . . T . . . . CT . T . . . A . C . AA . T A . . . . . . . . T . . . C T . . T . . . . . . . . . T A A T C . C . . . . G . . . . . T . TG . . . . . A . . C C . G . A ATCTAG A A T . CT C . . A T A . A A . C A A C . TGTTA T . . AC T G . A CCACC . . . . TG . . . . . . . T A . . . GT C TT A . . . . AAGT . . . C . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . G T . . C . . . . T . A . A ATCTA . . G . CA C . . . G A . A C . A A . . . TGTA . . . C G . . C GTAT . . . . A . . . . . . . C C . . . . C TA A . . . . ATAA . . . C . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A . . . A . . . . . . T A . . A . . . . . . . . . . . G . . . . . A . . . . T . A . . . . ATAT . . . C . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . T . . . . . . . . . . . ATA . . . T . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . GT . . . T . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . AT . . . C . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : ATCAAG** CT** TGTTA******************************** AC CG* ATAT********
originalCons : NTCATACTTAAACAAATCACTAACTCCTTCGGTATATCCCGATATGTTGGAAAAAAGNAAANTGTCGTACCCGTTCATAAAAAGATTGTGAAAATATCATAACATAATTACAGGCCAATTTCTTTAATTAGCACATATAGTTGGGANNGTAATGGGAAAGTCGTGTTTATAATCACTTGATNAGTTACATATANGAAAATCAAATCTTGTGCAAAAATCAGATCAGGTTTTNTTCAAGGTGACTCCACTGTANANNAACCTTTGGACATTTCTAANNATATTGGTAAAGCTATTTGATCAGGGTAAAGAAGTAAGGGGCG----TTTTTTGTGACATAAGTAAAGCATTCGACAGGGTTTGGCATGCTGGATTAATTTTTAAATTATTCCGGATCCAGTCCGGTTTTTCAGGAAAGGTTNTGTCTTGGCTAGAGGACTGCATGTACATGTATATACATGTATACCCAATNGAAGCNAAAGAGTGGTAATCAACTCTAAATCATNTAAATGGGTAAGAATAAACGCTGGAGTTCCACAAGGTTCTGTATNAGGTCCTCTTTTGTTTCTTATTTTTATAAACGACAT-TGTCCTTGACATAAAA-T-GTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTT-TATATATCGTTGTTGAAAA-CCCACAATCTGCAAGCAATATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGNC-CGTCGAATTCAAT-CCG-T-CAAAACAGAATCCTTGATAATAAGCAAC-AAACGCACTCAAACTACAC-ATCCAGA--TTTGTT-CTTAAACAANTGCATCATAAAAAAAT-GTTGAGAGTCATA-AGCAT-CTAG-----------------------GCGTTACATTT-TCCCAAAAT-GGGTTAT-GGT-TTCTCAT-GTAAACTCTGTTC--------TCT------CTC---TT-CGATTAAATATGCTACGTAAAATAAGTTATATACTAGATAGAAGATCATT--AGAAAAGTTTTA---TTTATCTT-TTAT-TAGACNTGTCCTTNAATATGCAGAA-ATAATTTTGGGACAATATTTCTG-TCG--AAC--TCGGTCAAAAACTTGAACGGTT-AAAC--AGGAAGC---CGCTAGAATCGTATC---GG--GT-A-AAAA--TACTCAAA-TATT--TAAT--CTTTACGATGAACTGGGCTGGG-AACCCC-TTGAAAACAGAAGAAAAAAAA--CCATAAAATT-ATACAT--TTTTCATAAAATG-GTCCATCG--CAAGTTCNTG-AGTATC-TAC-GCAACCTTGTCCCTCCAAAAATNT-GCGAATCCCAC---CACAT-ATA---CAAGA---GCGGACAA-CATAAA-TCTAACCAAATACAAAA-CTACGCACTACAAAAATTCATTT-CT------ACC-ATCAACNATT--TC-CT----T-GGAA-CAGT-CTCCCTGATGAT-GTAA--AAAAAGGA----CC--TCAATATCGCA-CCTTAAACGT-ATTTAAATGAAA-CACCA--AANCCC----CTCC-CACCGTACTTCCTCACAGGCTCAG-GGCAAGTT---CAAATTTTACAT-ACCC-TCTACGTATGAATTGCAGTTCACTCAANTACC-ATTTATTTT--CTA-AAAACATTGTAGATAGTCCTTTATGTGTTTG--GGCAAGATAG-AAGACACCAAACA-CT--ATTT-CCTAGAATGTCCTCTGTA-CAATCAACTTAGGCGAAAAT-ATCTTTCAAATCTA-GGCAAACAATGTTAACACNAACCTACT-G-CT-CTTTGGAGACCCAAACCTATCAGTATCTC-AAAACA---AAT-TATATTTCAATC----A----GTAC-ATAAATAT--ATCAAGCAAAGTAA-GAGATTCAATTCCTGAG-TGTTATGTATTGTAAT------AG-----TGC-TA-----------------TTTTT--CTGT-AATA-GCGACAAT------AAT-TTCATACGAC-CTA-C-AC-AC-GTCATCATCACCCT--TA-T----T-TA--TAT-GTTTC-GCA-TT-TT--TGTA--TTNGTATTTATT-GTA--CTC--AAAATTCCATCG-AGCTTAAAGAAGA-TTT--------AT-TATT---ATT-ATTATATGTTACATA-------ATAGG-AGAC-GGATTTACATAAGTC--TTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------ATAC--T---TGTTT-CAA-CGTC-AAT-AAATACA-GTTTAAAC
finalCons : NTCATACTTAAACAAATCACTAACTCCTTCGGTATATCCCGATATGTTGGAAAAAAGNAAANTGTCGTACCCGTTCATAAAAAGATTGTGAAAATATCATAACATAATTACAGGCCAATTTCTTTAATTAGCACATATAGTTGGGANNGTAATGGGAAAGTCGTGTTTATAATCACTTGATNAGTTACATATANGAAAATCAAATCTTGTGCAAAAATCAGATCAGGTTTTNTTCAAGGTGACTCCACTGTANANNAACCTTTGGACATTTCTAANNATATTGGTAAAGCTATTTGATCAGGGTAAAGAAGTAAGGGGCG----TTTTTTGTGACATAAGTAAAGCATTCGACAGGGTTTGGCATGCTGGATTAATTTTTAAATTATTCCGGATCCAGTCCGGTTTTTCAGGAAAGGTTNTGTCTTGGCTAGAGGACTGCATGTACATGTATATACATGTATACCCAATNGAAGCNAAAGAGTGGTAATCAACTCTAAATCATNTAAATGGGTAAGAATAAACGCTGGAGTTCCACAAGGTTCTGTATNAGGTCCTCTTTTGTTTCTTATTTTTATAAACGACAT-TGTCCTTGACATAAAA-T-GTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTT-TATATATCGTTGTTGAAAA-CCCACAATCTGCAAGCAATATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGNC-CGTCGAATTCAAT-CCG-T-CAAAACAGAATCCTTGATAATAAGCAAC-AAACGCACTCAAACTACAC-ATCCAGA--TTTGTT-CTTAAACAANTGCATCATAAAAAAAT-GTTGAGAGTCATA-AGCAT-CTAG-----------------------GCGTTACATTT-TCCCAAAAT-GGGTTAT-GGT-TTCTCAT-GTAAACTCTGTTC--------TCT------CTC---TT-CGATTAAATATGCTACGTAAAATAAGTTATATACTAGATAGAAGATCATT--AGAAAAGTTTTA---TTTATCTT-TTAT-TAGACNTGTCCTTNAATATGCAGAA-ATAATTTTGGGACAATATTTCTG-TCG--AAC--TCGGTCAAAAACTTGAACGGTT-AAAC--AGGAAGC---CGCTAGAATCGTATC---GG--GT-A-AAAA--TACTCAAA-TATT--TAAT--CTTTACGATGAACTGGGCTGGG-AACCCC-TTGAAAACAGAAGAAAAAAAA--CCATAAAATT-ATACAT--TTTTCATAAAATG-GTCCATCG--CAAGTTCNTG-AGTATC-TAC-GCAACCTTGTCCCTCCAAAAATNT-GCGAATCCCAC---CACAT-ATA---CAAGA---GCGGACAA-CATAAA-TCTAACCAAATACAAAA-CTACGCACTACAAAAATTCATTT-CT------ACC-ATCAACNATT--TC-CT----T-GGAA-CAGT-CTCCCTGATGAT-GTAA--AAAAAGGA----CC--TCAATATCGCA-CCTTAAACGT-ATTTAAATGAAA-CACCA--AANCCC----CTCC-CACCGTACTTCCTCACAGGCTCAG-GGCAAGTT---CAAATTTTACAT-ACCC-TCTACGTATGAATTGCAGTTCACTCAANTACC-ATTTATTTT--CTA-AAAACATTGTAGATAGTCCTTTATGTGTTTG--GGCAAGATAG-AAGACACCAAACA-CT--ATTT-CCTAGAATGTCCTCTGTA-CAATCAACTTAGGCGAAAAT-ATCTTTCAAATCAAG--CAAACAATGTTAACACNAACCTACT-GCT--CTTTGGAGACCCAAACCTATCAGTATCTC-AAAACA---AAT-TATATTTCAATC----A----GTAC-ATAAATAT--ATCAAGCAAAGTAA-GAGATTCAATTCCTGAG-TGTTATGTATTGTAATGTTA--------------------------------TTTTT--CTGT-AATA-GCGACAAT------AAT-TTCATACGAC-CTA-C-AC-AC-GTCATCATCACCCT--TA-T----T-TA--TAT-GTTTC-GCA-TT-TT--TGTA--TTNGTATTTATT-GTA--CTC--AAAATTCCATCG-AGCTTAAAGAAGA-TTT--------AT-TATT---ATT-ATTATATGTTACATAT--------AGG-AGAC-GGATTTACATAAGTC--TTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------ATAC--T---TGTTT-CAA-CGTC-AAT-AAATACA-GTTTAAAC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AACTAAGTATGGGTATAAAATTGGTCTTTGAAATAACTCTATAAATTTCAAATAACGGTACATAACAAAGACGTATCACACTT
Unaligned ( gi|23 ): TTTCTCTATTCCAACATTGTATCCTTTAAATGTAAATGCCAAGGTCTGTGGACAAAGCA
Unaligned ( gi|24 ): TAACCATTTTGAATACATGTGTGATTCTAACATGCATCTAAGATTTACCAAAATA
Unaligned ( gi|25 ): TTACCAATAATGAAACGTAACTTGTAAAATCGATAAACATTTTATTC
Unaligned ( gi|27 ): ACTAATTTAAGAAGGAGAGCCAGTAAATTTAAAGAACT
Unaligned ( gi|28 ): CGAAACACGGCCTTTTAAATACCACAATGACC
Alignments
lowQualScore : 11111111111111111111111
lowQualScore : 1 1 1 222 1 1 1 2222 1 1 1 1 1 1 2222222 222222 11 1 444444444444 3333333 1 1 1 1 1 111 111 1 1 1 1 1 1 1 1 1111 1 111 1 1 11 22 1 1 1 1 22222222222222222222222 1 1 1 2 1 99999999999999999999999999 11 222 1 1 22 1 11 11 1111 333333333333 6666666666666 11 333333333333 11 1 1 11 1 11 1 33 1 1111 1 1 3333 1 111 33333 1 222222 11 11 1 222222 1 1 1 555555555555555555 1 11 1111 11 1 11 2222 222222 1 2222222 11 22 1 22222 1111 111 1 111111111 22222222 222222 44444444444444 111 2222222 2222222 222222 1 11 333 11111111 22222222222222222 11111111 11111111 111
lowQualScore : 5 5 5 1 1 111 5 5 5 4444 22 5 1 5 1 5 5 1 1 22 22 5 5 8888888 7 888888 66 5 666666666666 2222222 1 1 1 5 5 5 1 5 8 2 0 2 2 3 777 777 0 0 0 0 0 3 3 0 2 3 0 3 2 0 9999 0 444 7 0 2 3 0 88 00 1 6 7 3 2 3 3 33333333333333333333333 3 3 3 6 3 7 99999999999999999999999999 7 7 6 88 333 3 3 1 1 00 7 7 6 3 0 88 88 6 8888 222222222222 8888888888888 88 000000000000 88 0 3 3 88 3 88 7 3 7 11 1 0 3333 0 3 1 0 0000 3 0 777 33 00000 8 99 0 8 0 0 888888 22 1 33 0 222222 0 0 0 3 222222222222222222 3 8 0 5 6 3 1 1 99 6 11 1 7777 0 00 0 6 00 4444 0 3 000000 2 3 1 0 1111111 3 22 3 33 0 3 6 99 888 1 6 1 6 1 1 33333 3 1 3 1 7777 5 6 000 7 1 444444444 5 5 1 77 7 8888 44444444 2 8 333333 3 6 77777777777777 111 8 0 8 55 3333333 3 8 0 2 3333333 6 6 77 5 111111 77 5 1 8 8 11 99 7 3 6 99 99 666 1 66 0 55 88888888 5 4 33333333333333333 3 3 77 4 0 3 555 2 2 2 5 33 00000000 77777 6 3 6666 3 3 44444444 55 111 4 4 8 4 4
lowQualScore : . . . . . ... . . . .... .. . . . . . . . . .. .. . . ....... . ...... .. . ............ ....... . . . . . . . . . . . . . . ... ... . . . . . . . . . . . . . . .... . ... . . . . . .. .. . . . . . . . ....................... . . . . . . .......................... . . . .. ... . . . . .. . . . . . .. .. . .... ............ ............. .. ............ .. . . . .. . .. . . . .. . . .... . . . . .... . . ... .. ..... . .. . . . . ...... .. . .. . ...... . . . . .................. . . . . . . . . .. . .. . .... . .. . . .. .... . . ...... . . . . ....... . .. . .. . . . .. ... . . . . . . ..... . . . . .... . . ... . . ......... . . . .. . .... ........ . . ...... . . .............. ... . . . .. ....... . . . . ....... . . .. . ...... .. . . . . .. .. . . . .. .. ... . .. . .. ........ . . ................. . . .. . . . ... . . . . .. ........ ..... . . .... . . ........ .. ... . . . . .
lowQualScore : 5 0 5 0 0 000 5 5 5 5555 00 0 0 5 0 5 5 0 0 00 00 5 5 7777777 3 555555 55 5 000000000000 5555555 0 0 0 0 0 0 0 0 8 5 0 5 5 2 000 555 0 0 0 0 0 2 2 0 5 2 0 2 5 0 0000 0 888 0 0 5 2 0 33 77 0 7 3 3 0 3 3 33333333333333333333333 3 3 3 7 3 3 77777777777777777777777777 3 3 7 33 333 3 3 0 0 77 3 3 7 3 7 33 33 7 0000 333333333333 0000000000000 33 777777777777 33 7 3 3 33 3 33 3 3 3 77 0 0 2222 0 2 0 0 0000 2 0 555 55 22222 0 00 8 0 8 0 888888 55 0 88 0 222222 0 0 0 2 000000000000000000 2 0 8 0 0 8 0 4 44 4 00 0 0000 8 55 5 5 22 0000 8 2 000000 5 2 0 0 2222222 2 55 2 88 0 2 7 22 777 7 7 0 7 7 7 55555 2 0 2 0 7777 2 7 000 1 4 333333333 7 0 3 99 9 0000 22222222 5 0 000000 2 0 00000000000000 888 0 8 0 88 6666666 8 0 3 5 7777777 7 7 99 7 777777 99 7 4 0 0 00 22 5 2 7 22 22 666 7 77 3 11 11111111 0 4 77777777777777777 1 1 33 0 8 1 444 9 9 9 7 99 44444444 11111 2 1 5555 1 1 55555555 55 000 0 0 0 0 4
consensus : NTCATACTTAAACAAATCACTAACTCCTTCGGTATATCCCGATATGTTGGAAAAAAGNAAANTGTCGTACCCGTTCATAAAAAGATTGTGAAAATATCATAACATAATTACAGGCCAATTTCTTTAATTAGCACATATAGTTGGGANNGTAATGGGAAAGTCGTGTTTATAATCACTTGATNAGTTACATATANGAAAATCAAATCTTGTGCAAAAATCAGATCAGGTTTTNTTCAAGGTGACTCCACTGTANANNAACCTTTGGACATTTCTAANNATATTGGTAAAGCTATTTGATCAGGGTAAAGAAGTAAGGGGCG----TTTTTTGTGACATAAGTAAAGCATTCGACAGGGTTTGGCATGCTGGATTAATTTTTAAATTATTCCGGATCCAGTCCGGTTTTTCAGGAAAGGTTNTGTCTTGGCTAGAGGACTGCATGTACATGTATATACATGTATACCCAATNGAAGCNAAAGAGTGGTAATCAACTCTAAATCATNTAAATGGGTAAGAATAAACGCTGGAGTTCCACAAGGTTCTGTATNAGGTCCTCTTTTGTTTCTTATTTTTATAAACGACAT-TGTCCTTGACATAAAA-T-GTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTT-TATATATCGTTGTTGAAAA-CCCACAATCTGCAAGCAATATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGNC-CGTCGAATTCAAT-CCG-T-CAAAACAGAATCCTTGATAATAAGCAAC-AAACGCACTCAAACTACAC-ATCCAGA--TTTGTT-CTTAAACAANTGCATCATAAAAAAAT-GTTGAGAGTCATA-AGCAT-CTAG-----------------------GCGTTACATTT-TCCCAAAAT-GGGTTAT-GGT-TTCTCAT-GTAAACTCTGTTC--------TCT------CTC---TT-CGATTAAATATGCTACGTAAAATAAGTTATATACTAGATAGAAGATCATT--AGAAAAGTTTTA---TTTATCTT-TTAT-TAGACNTGTCCTTNAATATGCAGAA-ATAATTTTGGGACAATATTTCTG-TCG--AAC--TCGGTCAAAAACTTGAACGGTT-AAAC--AGGAAGC---CGCTAGAATCGTATC---GG--GT-A-AAAA--TACTCAAA-TATT--TAAT--CTTTACGATGAACTGGGCTGGG-AACCCC-TTGAAAACAGAAGAAAAAAAA--CCATAAAATT-ATACAT--TTTTCATAAAATG-GTCCATCG--CAAGTTCNTG-AGTATC-TAC-GCAACCTTGTCCCTCCAAAAATNT-GCGAATCCCAC---CACAT-ATA---CAAGA---GCGGACAA-CATAAA-TCTAACCAAATACAAAA-CTACGCACTACAAAAATTCATTT-CT------ACC-ATCAACNATT--TC-CT----T-GGAA-CAGT-CTCCCTGATGAT-GTAA--AAAAAGGA----CC--TCAATATCGCA-CCTTAAACGT-ATTTAAATGAAA-CACCA--AANCCC----CTCC-CACCGTACTTCCTCACAGGCTCAG-GGCAAGTT---CAAATTTTACAT-ACCC-TCTACGTATGAATTGCAGTTCACTCAANTACC-ATTTATTTT--CTA-AAAACATTGTAGATAGTCCTTTATGTGTTTG--GGCAAGATAG-AAGACACCAAACA-CT--ATTT-CCTAGAATGTCCTCTGTA-CAATCAACTTAGGCGAAAATA-TCTTTCAAATC-G--GCAAACAATGTTAACACNAACCTACTG-CT-CTTTGGAGACCCAAACCTATCAGTAT-CTCAAAACA---AAT-TATATTTCAAT----C----AGTAC-ATAAATAT--ATCAAGCAAAGTA--A-GAGATT--------CAATTCCTGAG-TGTTA------TGTATTGTAATGTTAT--------------TTTTC--TGT-AATA-GCGACAAT------AAT-TTCATACGAC-CTA-C-AC-AC-GTCATCATCACCCT--T-AT----T-TA--TAT-GTTTC-GCA-TT-TT--TGTA--TTNGTATTTATT-GTA--CTC--AAAATTCCATC--AGCTTAAAGAAGA-TTT--------AT-TATTATTA-TTATATGTTACAT-----A--------TAGG-AGAC-GGATTTACATAAGTC--TTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------ATAC--T---TGTTT-CAA-CGTC-AAT-AAATACA-GTTTAAAC
Reference ( family-374 ) : NTCATACTTAAACAAATCACTAACTCCTTCGGTATATCCCGATATGTTGGAAAAAAGNAAANTGTCGTACCCGTTCATAAAAAGATTGTGAAAATATCATAACATAATTACAGGCCAATTTCTTTAATTAGCACATATAGTTGGGANNGTAATGGGAAAGTCGTGTTTATAATCACTTGATNAGTTACATATANGAAAATCAAATCTTGTGCAAAAATCAGATCAGGTTTTNTTCAAGGTGACTCCACTGTANANNAACCTTTGGACATTTCTAANNATATTGGTAAAGCTATTTGATCAGGGTAAAGAAGTAAGGGGCG----TTTTTTGTGACATAAGTAAAGCATTCGACAGGGTTTGGCATGCTGGATTAATTTTTAAATTATTCCGGATCCAGTCCGGTTTTTCAGGAAAGGTTNTGTCTTGGCTAGAGGACTGCATGTACATGTATATACATGTATACCCAATNGAAGCNAAAGAGTGGTAATCAACTCTAAATCATNTAAATGGGTAAGAATAAACGCTGGAGTTCCACAAGGTTCTGTATNAGGTCCTCTTTTGTTTCTTATTTTTATAAACGACAT-TGTCCTTGACATAAAA-T-GTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTT-TATATATCGTTGTTGAAAA-CCCACAATCTGCAAGCAATATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGNC-CGTCGAATTCAAT-CCG-T-CAAAACAGAATCCTTGATAATAAGCAAC-AAACGCACTCAAACTACAC-ATCCAGA--TTTGTT-CTTAAACAANTGCATCATAAAAAAAT-GTTGAGAGTCATA-AGCAT-CTAG-----------------------GCGTTACATTT-TCCCAAAAT-GGGTTAT-GGT-TTCTCAT-GTAAACTCTGTTC--------TCT------CTC---TT-CGATTAAATATGCTACGTAAAATAAGTTATATACTAGATAGAAGATCATT--AGAAAAGTTTTA---TTTATCTT-TTAT-TAGACNTGTCCTTNAATATGCAGAA-ATAATTTTGGGACAATATTTCTG-TCG--AAC--TCGGTCAAAAACTTGAACGGTT-AAAC--AGGAAGC---CGCTAGAATCGTATC---GG--GT-A-AAAA--TACTCAAA-TATT--TAAT--CTTTACGATGAACTGGGCTGGG-AACCCC-TTGAAAACAGAAGAAAAAAAA--CCATAAAATT-ATACAT--TTTTCATAAAATG-GTCCATCG--CAAGTTCNTG-AGTATC-TAC-GCAACCTTGTCCCTCCAAAAATNT-GCGAATCCCAC---CACAT-ATA---CAAGA---GCGGACAA-CATAAA-TCTAACCAAATACAAAA-CTACGCACTACAAAAATTCATTT-CT------ACC-ATCAACNATT--TC-CT----T-GGAA-CAGT-CTCCCTGATGAT-GTAA--AAAAAGGA----CC--TCAATATCGCA-CCTTAAACGT-ATTTAAATGAAA-CACCA--AANCCC----CTCC-CACCGTACTTCCTCACAGGCTCAG-GGCAAGTT---CAAATTTTACAT-ACCC-TCTACGTATGAATTGCAGTTCACTCAANTACC-ATTTATTTT--CTA-AAAACATTGTAGATAGTCCTTTATGTGTTTG--GGCAAGATAG-AAGACACCAAACA-CT--ATTT-CCTAGAATGTCCTCTGTA-CAATCAACTTAGGCGAAAATA-TCTTTCAAATCAA--GCAAACAATGTTAACACNAACCTACTG-CT-CTTTGGAGACCCAAACCTATCAGTAT-CTCAAAACA---AAT-TATATTTCAAT----C----AGTAC-ATAAATAT--ATCAAGCAAAGTA--A-GAGATT--------CAATTCCTGAG-TGTTA------TGTATTGTAATGTTAT--------------TTTTC--TGT-AATA-GCGACAAT------AAT-TTCATACGAC-CTA-C-AC-AC-GTCATCATCACCCT--T-AT----T-TA--TAT-GTTTC-GCA-TT-TT--TGTA--TTNGTATTTATT-GTA--CTC--AAAATTCCATCG-AGCTTAAAGAAGA-TTT--------AT-TATTATTA-TTATATGTTACAT-----A--------TAGG-AGAC-GGATTTACATAAGTC--TTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------ATAC--T---TGTTT-CAA-CGTC-AAT-AAATACA-GTTTAAAC
gi|1 : TCATATTTAA-CAAATCA-TAACTCTTTCAGTATATCCCGATATGTTGGAAAAAAGCAAATTGTC---CCCGTTCATAAAAAAAT-GTGAAAA-ATCATAACATAATTACAGGCCAATTTCTTTAATTAGCACA----GTTGGGAAGGTAATGGAAAAGT-GTGTTTATAATCACTTGATAAAT-ACATATACGAAAATCAAATTTTGTGCAAAA-TCAAATCAGGTTTTTTTCAAGGTGACTCCACTGTAAATCAACTTTTGGATATTTCTAACGA-ATTGGTAAAGCTATTTGATCAGGGTAAAGAAGTAAGGAGCG----TTTTTTGTTACATAAGTAAAGCATTCGACAGGGTT-GGCATGCTGGATTACTTTTTAAATTATTCC------AGTCCGGTTTTTCAGGAAAAGT-ATGTCT-GGCTAGAGGACT------------ATAT-------TATCCAATAGAAGCCAAAGAGTAGTAATCAACTCTAAATCATCTAAATGGGTAA-AATAAACGCTGGAGTTC-ACAAGGTTCT-TATGAG-TCCTCTTTTGTTTCTTATCTTTATAAACGACAT-T-TCCTTGACATAAAA-TTGTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTT-TATATATCGTTGTTGAAAAACCCACAATCTGCAAGCAA-ATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGGCTCGTCGAATTCAAT-CCG-T-CAAAACAGAATCCTTGATAATAAGCAAC-AAACGCACTCAA--TACAC-ATCCAGA--CTTGT--CTTAAACAACTGCATCATAAAAAAAT-GTTGAGAATCATA-AGCAT-CTAG-----------------------GCGTTACATTT-TCCCAAAAT-GGGTTAT-GGT-TTCTCAT-GTAAACTCTATTC--------TCT-------------T-CGATTAAATATGCTACGTAAAATAAGTTATATACT---TAGAA--TCATT--AGAAAAGTTTTA---TTTATCCT-TTATCTAGACCTGTCCTTGAATATGCAGAA--TAATTTTGGGACAATATTTCTGCTTGTCAAC--TCAGTCAAAAACTTTGACGGTT-AAACCCAGGAAGCGCTCGCTAGAATCGTATCCGGGG--GT-ACAAAA--TAC--AAA-TATT--TAAT--CTTTACAATGAACTGGGCTGTG-AACCCC-TTGAAAACAGAAGAAAAAAAA--CCATAAAATT-ATACAT--TTT-CATAAAATG-GTCCCTCG--CAAGTTCCTG-AGTATC-TAC-GCAACCTTGTCCC-CCAAAAATTT-GCGAATCTCAA---CACAC-ATAACACAAGACAAGCGGACAA-CATAAA-TCTAACCAAATACAAAA-CTACGCACTACAAAAATTCATTTACT------AC--ATCAACAATT--TC-CT----T-GGAA-CAGT-CTCCCTGATGATTGTAA--AAAAAGAA----CCCTTCAATATCACA-CCTTAAACGT-ATTTAAATAAAA-CATCA--AAACCC----CTCC-CACCATACTTCCTCACAGGCTCAG-CGCAAGTT---CAAATTTTACAT-ACCC-TCTACGTATGAATTGCAGTTCACTCAAATACC-ATTTATTTT--C-A-AAAACATTGTAGATAGTCCTTTATGTGTTTG--GGCAAGATAGAAAGACACC-AACA-CT--ATTT-CCTAG-ATCTCCTCTGTA-CAATCAACTTAGGCGAAAATA-TCTTTC-AATCTATGACAAACAATGTCAACACTAACCTACTGCCT-CTTTGGAGACCCAAA--TATCAGTAT-CTCAAAACA---AAT-TATATTTCAAT----C----AGTACTATAACTAT--ATCAAGCCAAGTA--A-GAGATT--------CAATTCCTGAG-TGTTA------TGTATTGTAATGTTAT--------------TTTTC--TGT-AATA-GCGA-AAT------AAT-TTCATACGACACTA-C-AC-AC-ATCATCATCACCCT--T-AT----T-TA--TAT-GTTTC-GCA-GT-TT--TGTA--TTTGTATTT-TT-GTA--CTC--AGAATTTCATCATAGCTTAAAGAAGA-TTT--------AT-TATTATTA-TTATATGTTACAT-----ACACAAATGTAGG-AGAC-AGATTTACATAAGTC--TTTCGAAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGA-T-TGTA--------ATAC--T---TGTTT-CAA-CATC-AAT-AAATACA-GTTTAAAC
gi|10 : aT-----A--------AAGG-AGAC-AGATTTACATAAGTC--GTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--TAAATTTATA-----ATG-ATGCATTG-TT----TGT-T-TGTA--------TCAC--T---TGTTT-CAA-CGTC-AAT-AAATACA-GTTTAAAC
gi|11 : ccataacttataaaagaagattG-AGAC-GGATTTATATATGTC--ATT-GTAC-TTGTTTT---TGAAT-CCTAA-TGTAGTT--------A-----ACGTATGTACTC-TT----TAT-T-caaatgtgtaacaacagttttatttttatatgaaagtttttatttactcggtcagtatacgt
gi|12 : tcacatagccccattaccattttatttcgtttatttttctgtatacttatgtttacacatacatgttcctatcataactataggacgatttAATA-CTGAATCTACTTAGAA-GTCAATTGTA-TGATCAACTGAGGGGCAAATA-TCTTTTGGGGCAA--GCAAACA---TTAACACAAATCGA-TG--------GGCAACCCAAACTTATCAGCATCCCCAAAACATATAAT-TATA--TCAAT----C----AGTGC-ATAAATAT--AT-ATTCAAAGTA--A-
gi|13 : AAA-TTT--------AT-TATTATTAATTATATGTTA-AC-----A--------TAGGCAGAC-AGATTGACATAAGTC--TTTCGAAC-TTGTTGC---TGAAT-CC--A-T-T---T--------A-----ATG-ATG-ATTGCTC----TGT-TATGTA--------ATAC--TA--TGTTA-CAA-AGTC-AATAAAATA-A-GTTTAAAC
gi|14 : AAATTTAATCG-ACCTAAAATATGAATTT--------AT-TATGATTA-TTATA-GTTACAT-----A-----------G-AGAC-A-ATTT-CAAAAGTC--TTT--TAC-TTGTT-C---TGAATTCCT-A-T--A--T--------A-----ATG-ATGCATAG-T------GT-T-T-TA--------ATAC--T---TGTTT-CAA-CGTCTAAT-AAATACA-GTTTAAcaaaatagtttcat
gi|15 : G-AGAC-GGATTTACATAAGTC--TT--GTACCTTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----TTGAATGTATTC-GT----TAT-T-T
gi|16 : gaTAAGTC--TTTCGTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-A-----TG-TT----TGT-T-TGTA--------GTAC--T---TGTTT-CAA-CTTC-AAT-AAATATA-ATTTcccagcaaacagtcatcgacgtcatttcgacgtcagatttaagtcgttt
gi|17 : tttacatattaatATCAGGGTAAAGAAGTAAGGG-CGGTTTTTTTTTGTGACATAAGTAAAACATTCGACAGGGTTTGGCCTGCTAGATTAATTTTTAAATT
gi|18 : CAAAACA---AATCTATATTTCAAT----CTGACAGTAC-ATAAATATATATCAAGCAAAGTA--A-GAGATT--------CAATTCtt
gi|2 : gacacgaaatatgtaaaCTTTTGTTTCTTATTTTTATAAAGGA-ATATGTC-TTGACATAAAAAT-GTAAAAGCATTGAAACTATTTGCAGATGAACATCTCACTTATATAT-TTGTTGT-GAAAA-CC-ACAATCTGCAAGCAATATTGCTAA-TAATGATCTTCAGAAAATCGAT-AGTGGTTGATAGCAATGG-C-TGTCGAATTTACTTCCG-T-CAAAACAGAATCCTTGATAA-AAGCAACCAAACGCA-TCAAACTACACGATCCAGAACTTTGTTTCTTAAACAAGTGCAT-ATAATAAAATTGTTAAAA-TCATAGAGCATTCTAGCGTTAACTTTTCCCAAGATGGTAGCGTTACATTTGTTCCAAAATTGGGTTATTGGTCTTCTCATTGTAA-CTCTGTTTCTACGAAATCT------TTC---TTGCGATTAAATATGCTAAGTAAAATAAGTTA-ATACTAGATAGAAGATCATT--AGAAATGTGTTGAATTTTATCTTGTTAT-TAGGATTGTCTTGAAATATGCAGAGTATAATTT-GGGATATGATTT-TG-TCG--AATAATCG-TCAAAAACTTGAACGGTTTAAAC--AGGAAGC---CGCTAGAATCGTATC---GGTGGTTA-AAAACTTACTCAAAATATTATTAATAACTTCACAATGAACTGGCATGGGTAACTCCGTTGAAAACAGGTAGGAAAAAA--CAATAAAATTTATACAT--TTTTCATAAAATGTGTCCATGGT-CAAGTTCGTGGAGT-TCATACAGCAACCTTGTCCTTCCAAAAATTTTGCGAATCTCAC----AC-T-ACA---CAAAAA--GTGGACAAGCATAAAATCTAAC-AAATACAAAAATTATGCACTACAAAG-TTCATTT-CT------ACCGATCAGCAATT--TT-CT----TTGGAATCAGTGCTCCCTGATGAT-GTAA--AA---GGA----CT--TCAAT--TGCAACCTTAAAT-C-ATTTAAATGAAA-AACCATAGAACTC----C-AC-CATC-TACTATCTCA-AGGCTCAGCGGCAAGTTGCATAGATTTTACATTACCG-TCTAGGTATGAATTGC-GTCTAATCAAATACCTATTTATTTTTTCTAGAAAACATTGTAGA-AGTCCTTTATGTGTTTGATGGCAAGATAG-AAGACACCAAACAGCT--ATTT-C-TAGAATGTCCTCTGTATCAAGTAACTTAGGCGAAAATAATTTTTCAAATTAG--GCAAACAATGTTAAAACTACCTTACTGGCTGCTTTGGAGACCCAAAC-TATCAGTAT-TGCAAAACA---AAT-TATATTTCAAT----C----AGTAC-AT-AATAT--AT-AATCAAAGTA--ACGAGATT--------CGATT-CTGCGTTGTTA------T-TATTGTAATG-TAT--------------TTTTC--TGT-AATA-GAGACAAT------AATGTTCATA-GAC-GTA-T-ACAACAGTCATCA-CTCCTT--C-AT----TGTA--TAT-GTTTCAGCA-TT-TT--TGTAATTTGGTATTTATT-GTA--CTC--ATTATTCCGT---AGTT--AAGAAT--TTT--------ATGTA-TATTA-TTATATG-TACAA-----G--------TAGG-AGAA-CGATTTAACTAAGTCT-TTTCG-AA-TTGTTTCTATTGAAT---T-ATT-TA--T--------AACATTATG-ATGTATTG-TTGTGATGT-G-TG-A--------ATAC--CTTGTGTTTACAA-CGTCAAAT-TCATACA-GTTTAAAC
gi|20 : AAT-CGT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------GTAC--T---TGTTT-CAA-CGAC-AAT-AAATACA-GTTTAaacatgcaataagagttctttataggtgggacatttta
gi|21 : tcattctttaccatgtcTA--TTAGTATTTATT-GTA--CTT--AAAATTTCAT---AG------------TTT--------AT-TATTATTA-TTATATGTTAC-------G--------TAGG-AGAC-AGATTTACATAA
gi|22 : GG-AGAC-GGATTTACATAAGTC--TT--GTAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----TTG-ATGTATTG-TT----CAT-T-T
gi|26 : -CATAAA-TCTAACCAAATACAAAA-TTACGCACTACAAAAATTCAcc
gi|3 : TCATACTTAAACAAATCACTAACTTCTTTGGTATATCCCGATATGT-GAAAAAAAAAAAAATGTCGTACCCGTTCATAAAAAGATTGTAAAAATATTATAAC-TAATTACAGGCCAATTTCTTTAATTAGCATATATAGTTGGGATCGTAATGGGAAAATCGTGTTTATAATCACTTGATTAGTTACATATAAGAAAATCAAATCTTGTGCAAAAATCAG-TCAGGTTTTATTCAAGGTGACTCTACTGTACAAAAACCTTTGGACATTTCTAAGTATATTGGTAAAGCTATT-GACCAGGATAGAGAAGTAGGGGAAG----TTTTTTGTGACATAAGTAAAGCATTCGACAGGATTTGGCATGTTGAATTAATATTTAAACTATTCCGGATCCAGTCCGGTTTTTCAGGAAAGGTTCTGTCTTGACTAGAGGACTGCATGTACATGTATATACATGTATACCCAATTGAAGCAAAAGAATGATAATCAACTCTAAATCATATAAATGGGTAAGAATAAACGTTGGAGTTCCACAAGGTTCTGTATTAGGTCCTCTTTTGTTTCTTAATTTTATAAA-GACAT-TGCCCTTGACATA-------TAA---TATT-AAACTATTTGCAGATAA-CA-CT-ACTT-TATATATCGCCGTTGATAA-TCCACAATTTGCAAGTAATATT-CTAAATAATGATCTTCAGAAAATCCACCAGTGGTCTA-AGCACTGGAT-GGTTGAATTCAAT-CCGCC-CAAACCATAATCATTAATAATAAGCAAA-AAACGCGCTCAAACTACAC-ATCCAGA--TTTATT-CTTAATCAATTGCATCAT-AAAAAAT-GTTGAGAGTCATA-AGCAT-CTAG-----------------------GCGTTACATTT-TCCCAAAAT-GGGTTAT-GGTGTTCTCAT-GTAAAATCTGTTC--------TCCCCAAAGCTCTTGTT-CGATTAAATATGCTACGTAAAATTACCTATCTACTAGATAGAAGATCATTAAAAAAAAGTTTTA---TTTATCTT-TTAT-TAGACATGTCCTTTAATATGCTGAA-ATAA-TTTGGGACAATATTTCTG-TTG--AAC--TCGGTCAAAAACTTGAACA----AAAC--A---------------AAACTTAT--------------AAA--TATTC-------T--TAAC--CTTTACGATGAACTGGGCTGGG-AGCCCC-TTGAAAACAGAAGAAAAAAAATTCCATAAAATT-ATACATACTTTTCATAAAATG-ATCCA-CGGCCAAGTTCATG-AGTATC-TAT-GAAACCTTGTTCCTCCAAAAATAT-GCGAATCCCACACACACATAATA---CA--A---GCGGACAA-CATAAT-TCTAACCAAATATAAAA-CTACTCACTACAAAAATTCATTT-CTACCAGAACC-ATCAACTATTTCTC-TT----T-GGAA-CAGT-CTCCCTGATGAT-GTAAATAAAAAAGAACCCCC--TCAATATCACA-CCTTAAACGTCACTTATATTAAA-TA-GA--AATCCC----CTCC-
gi|4 : CA-CCTTGAACGTGATTTAAATAAAAACATCA--AACCCC----CTCC--ACCATACTTCCTCACAGGCTCAC-AGCAAGTT---CAAATTTTACAT-ATTCGTCTACGTATGAATTGCAGTTCACTCAATTACC-ATTTATTTT--CTA-AAAACATTGTAGATAGTCCTTTATGTGTTTGT-GGCAAGATAG-AAGACACCAAACA-CT--ATTT-CCTAGAATGTCCTCTGTA-CAATCAACTCAGGCGAAAATA-TCTTTCAAATCTA--GCAAATAATGTCAACACTAACCTACTG-CT-CTTTGGAGACCCAAACCTATCAGTAT-CTCAAAACA---AATCTATATTTCAATCATGC----AGTAC-ATAACTAT--ATCAAGCAAAGTA--A-GAGATT--------CAATTCCTGAG-TGTTA------TGTATTGTAATGTTAT--------------TTTTC--TGT-TATA-GCGAAAAT------AAT-TTCATACGAC-CTATT-AC-AC-ATCATCATCACTCT--TAAT----TGTA--TAT-GTTTCAGCA-TT-TT--TGTA--TTTGTATTTATT-GTA--CTC--AAAATTCCATC---GCTTAAAGAAGA-TGT--------AT-TATTATTA-TTATATGTTAC-------A--------TAGG-AGAC-AGATTTACATAAGTC--TTTCGAAC-TTGTTTC---TGAAT-CCT-A-T-TA--T--------A-----ATG-ATGTATTG-TT----TGT-T-TGTA--------ATAC--T---TGTTT-CAA-CGTC-AAT-AAAac
gi|5 : aAGTTCCTG-AGTAA---AT-GCAACATTGTTCCTTCTAAAATAT-ATGAATCCCACT--CGCAT-ATA---CAAGA-------------------------CAA-TATAAAA-CCACGCACTGCAAAAAGCAACTT-CT------ATC-CTCAAATATT--TCTCTGCGGT-GGAA-CAGT-CTTCCTGACGAT-G---------------------TCAAGATTG----CTTAA---T-A-------GAAA-TACCA--ACCCCCTCTGCTCCTCCCTGTACTTTCTCATAGGTTCAG-GACAAGTT-------TT----------------------AATTGCAGTTTACTCAATTACC-ATTTATTT----TG-AAA--ATCGTAG---------TATGCGT-----------ATAC-AAGACTCCAAACA-TT--ATT----TAGAACATCGTCTA----AATC----TAG---------------CAA-----------ACAATATTACCACGGAAATACAG-CT-TTCTGGAGATCC--ACCT-----TA---TCAAAA--------------GTCGAC----C----AGTTC--T---TGT--ATCACACAAA-------------------------TCCTAAG-TTTTG------TGTACTATAATGATACCAGGGCCCTGCATATTATC---GT-AA-A-ACGACGAGGAGGAAAGT-TTTACACGAC-----------C-ATCACCATCACCCTTGT-AT----A-TA--CAT-GTTTC-aatatcgtt
gi|6 : -CT--AATT-CTTAAAATGGTCATTGTA-CAATAAACTTTGACAAAAATA-TCTTTCAAATC---------------TA-CACAAACCTACTG-CA-CTTTGGGAATCCAAACCTATCAATAT-CTCAAAACA---AATATATATTTCAAT----C----AGTAC-ATAAATAT--ATAAAGCAAAGTACTA-AGTATTATGTAACATAAT-----AG-TACTAAAGACTTGCATT----TGTCCT--------------TTTTTATTGTCAGTATACG-CAAG------A---TGCGAAAGAC-CCATC-AC-AC-GTCATCATCACCCT--T-GTATAAT-TACTTAT-GTTTC-aac
gi|6 : TCA-TTATACGT-ACATGTAACA--------TAGG-AGAT-GGATTTACATAAGTC--TTTTGTAC-TTGTCTC---CGAAT-CCT-A-T-CA--T--------A-----tccatagcttcattatacgtacatgtaacataggagatggatttacataagtcttttgtacttgtctccgaatcctatcata
gi|7 : ctaattcttaaaatggtcattgtacaataaactttgacaaaaatatctttcaaatctacacaaacctactgcactttgggaatccaaacctatcaatatctcaaaacaaatatatatttcaatcagtacataaatatataaagcaaagtactaagtattatgtaacataatagtactaaagacttgcatttgtccttttttattgtcagtatacgcaagatgcgaaagacccatcacacgtcatcatcacccttgtataattacttatgtttctccatagctTCACACGAC-CCA-CCAC-AC-GTCACCATCACCCT--T-GT----G-TA--TAC--TTTT-GTA-TT-TGCATGTA--TACGTATTTCTTTGTA--TTTTTAAAATTCCAT---AGCTTTAAGGGGA-GTT--------GT-TATCATTA-TCACATGTAACAT-----A----------AG-AGAC-GGATTTATATAATTC--TTTTGTAC-TTGTTTC---CGAAT-CCT-A-T-CA--T--------G-----CTA-ATATCATG-TT----TGT-A-GGTACAAGTATCATACCAT---TTCTT-CAATCAAT-AAT-AAATACAGGTTTAAGC
gi|8 : TTTTGTTTCTTATTTTTATAAACGACAT-TGTCCTTGACATAAAA-T-GTAA---CATT-AAACTATTTGCAGATGA-CA-CT-ACTT-TATATATCGTTGTTGAAAA-CCCACAATCTGCAAGCAATATT-CTAAATAATGATCTTCAGAAAATCCATCAGTGGTCTA-AGCAATGGCT-CGTCGAATTTAAT-CCG-TCCAAAACAGAATCCTTGATAACAAGCAAC-AAACGCACTCAAACTACAC-ATCCaaaattt
gi|9 : --T-AT----T-TA--TATTGTTCA-GCAATTATT--TGTA--TT-GTATT-ATT-GTAAATTC--AAAATTCCA--GTAGTTTAGAGTAGA-TTTGGTTATTCAT-TATTATTA-TCAT-TGTTATAT-----A--------TCGG-AGACAGGATTTACATAGATCATTTCCGTAC-TTGTGTC---TGAAT-CCT-G-TGTA--T--------A-----AT--ATGTATTG-TT----TGTGT-TGTA--------GCAC--T---TGTG--AAA-CGTC-AAT-AAATACA-GTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AACTAAGTATGGGTATAAAATTGGTCTTTGAAATAACTCTATAAATTTCAAATAACGGTACATAACAAAGACGTATCACACTT
Unaligned ( gi|23 ): TTTCTCTATTCCAACATTGTATCCTTTAAATGTAAATGCCAAGGTCTGTGGACAAAGCA
Unaligned ( gi|24 ): TAACCATTTTGAATACATGTGTGATTCTAACATGCATCTAAGATTTACCAAAATA
Unaligned ( gi|25 ): TTACCAATAATGAAACGTAACTTGTAAAATCGATAAACATTTTATTC
Unaligned ( gi|27 ): ACTAATTTAAGAAGGAGAGCCAGTAAATTTAAAGAACT
Unaligned ( gi|28 ): CGAAACACGGCCTTTTAAATACCACAATGACC