lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111 1111111111111111111111111111111111111111
lowQualScore : 3333333 11111111 555555555555555555 3333333 11 1 55555 1 222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111 1 11 11111 11111111 22222222 3333333 11111111 333333333333333 111111111111111111111111111 1 222222 22222222 1 22 11 222 11 1 22 11 11 222 1 33 222 1 3333 2 2 222 22222 4444444 11 4444 1 1 4444 333333333 2 1 22222 1 1111111111111111111111111111111111111111 1 333 1 11 1 22222 11 1 1 222 1 4444444444444 11 11 1 1 1 1 222222 1 1 8888888888888888888888888 2
lowQualScore : 1111111 8 0 55555555 222222222222222222 0 1 3333333 0 88 2 3 99 99 0 5 5 5 00000 5 5 1 5 0 2 555555 3 4 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 1 5555 2 55 4 4 4 4 7 11 88888 6 66 3 44 3 22222 666 5 22222222 1 666 2 33333333 3 7 55 666 8 9999999 66 5 3 88888888 222222222222222 1 111111111111111111111111111 6 4 3 111111 00000000 3 00 88 111 7 88 7 3 33 7 44 88 333 7 00 999 3 6 8888 0 0 555 66666 1111111 44 7777 99 5 5 6 2222 777777777 0 5 77777 5 2222222222222222222222222222222222222222 5 555 3 88 8 0 6 6 0 22222 2 33 0 3 1 333 7 3 2222222222222 6 33 33 0 0 0 0 0 888888 0 9 0 2 9999999999999999999999999 6 0 2
lowQualScore : ....... . . ........ .................. . . ....... . .. . . .. .. . . . . ..... . . . . . . ...... . . ............................................................................................................. . . .... . .. . . . . . .. ..... . .. . .. . ..... ... . ........ . ... . ........ . . .. ... . ....... .. . . ........ ............... . ........................... . . . ...... ........ . .. .. ... . .. . . .. . .. .. ... . .. ... . . .... . . ... ..... ....... .. .... .. . . . .... ......... . . ..... . ........................................ . ... . .. . . . . . ..... . .. . . . ... . . ............. . .. .. . . . . . ...... . . . . ......................... . . .
lowQualScore : 4444444 9 7 22222222 000000000000000000 4 4 9999999 7 88 2 2 22 22 7 7 3 0 00000 7 7 7 7 1 0 222222 2 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 1 4444 0 66 4 4 6 4 2 88 66666 5 33 0 66 6 77777 444 9 33333333 6 444 2 00000000 6 3 00 444 0 0000000 99 0 4 11111111 444444444444444 0 777777777777777777777777777 7 0 3 777777 77777777 3 00 33 000 3 33 3 3 88 0 00 33 333 0 33 000 3 0 0000 0 0 555 55555 0000000 55 0000 00 0 0 0 0000 555555555 0 5 00000 0 0000000000000000000000000000000000000000 0 000 3 33 3 7 7 7 0 22222 2 88 0 3 0 333 3 3 4444444444444 0 88 88 0 0 0 8 0 888888 0 8 0 5 8888888888888888888888888 0 0 5
consensus : AAGAGAA-----AACTAGCGGCGATTCAAGC-TTTATTCGCTTA---CGAC-GATTGGGACATA-------TG------GAGTCCTGAAAGAGAA----GNNGTTCCCGTAGCGACGACACCAGCTTCCCCACCTAACATCCTTA--TC--CATCCTCAACCATC-ATCGACAGAATGCCCCGATTGCCTCCGTCA---GCCATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTTGG-----TNGCCTGATGGACCNAAAAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AATGGACATGCGACAAAAGCG-A-TTCGT-CTGG-CAGA-CATAC-GGAATAAAACGGGAAATAATGCCCAA-CTGTGTGATTCGGCAGATCAGGGA--ATGGTTGCCA-AATCC-----CG---ATGG--A-----CAGTCTT---ACATGGG-A-CA---TG-T-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTAG-C-A-GTA---AAGTAAAAAGAA-------------A-----AAT--G--GTTCTNCAA-CAGGAAGGCCTCCACGT-GCTAGAA-CTG--GAAACATTGT-TTTATT-GAGTGAAT--ATTTTAC-GTAGAAT--TTTAAAATTTATT-TGTCAT-CGGACTGTAATTAC-GAACCTA--GCAAG---CTGATCAT-CACAGATCCTGTGGCGGG-GAAA-CTTCTAACCGACGGGACAGTATCACGCGGTTCTGTAGTTTACAAGTTTCGCNCCGAGNNTTTTGTTGACANGCCTTGGACACCTACTAGCGTGGAGTGCNTCCANCAATGCTTCTAAACATGTTTCCACGACAAACGCACGCAGTTAGGAGACGGAGATCCTACAACATGAGGACGGGCCTTAGGGCTGCATATGCCGTTGGAATGAGAATAGCGTCGA-CAG--GCTGTCTACCGGAATGTAACAATAC-C--CG-ACCGGG--AAAACCA-AGAAAATCCT-TGGACAGA---GAACATTTCAGTACC-GTGAGGA---TATCT----GGCAACAT--TTTA--TCCAAGCTTT-GACTGA-GTGA-CACTATCGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTATT-AAAAAAAAT--TTAA-A----GAGGTTCTACACCGAGGAGGCCTCCACGTGGCTAAGAANTGGTAC
Reference ( gi|1 ) : AAGAGAA-----AACTAGCGGCGATTCAAGC-TTTATTCGCTTA---CAAT-GATTGGGAT----------TA------GAATCCTGAAAGAGAA----GTTGTTCCCGTAGGAACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCGACAGAATGCCCCGATTTCCTTTGTCAGCCGCCATGC-GTTCTTG-CAGAGA-ACAACAGACATTCTTGA-----TGGCCTGATGGACCTAAAACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AATGGACATGCGACAAAAGCT-A-TTCAT-CTGG-CAGA-CTTAC-GGAACAAAACGGGAAACAATGCCCAA-CTGTGTTATTCGGCAGGTCAGGGA--ATGGTTGCCA-AATCC-----CG---AGGG--A-----CAGCCTT---ACATGGG-A-CA---TG-T-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTAG-T-A-GTA---AAGCAAAAAAAA-------------A-----AA---G--GTTCTACAA-CAGGAAGGCCTCCACGTGGCTAGTA-CTG--GAAACATTGT-TTTATT-GAGTGAAT--ATTTTAT-GTAGAAT--TTTAAAATTTATT-TGTCA--CGGATTGTAATTAC-GAACCTA--GCAAG---CTGAACAA-CACAGATCCTGTGGCGGG-GAAA-CTTCTAACTGATT---CAGT-TCACA-GGTTC-GTAGTTTACAAGTTT---ACCGAGGATTTTGA-G-CATACCGTGTATACCTACTA-CTAGGAGT-CATT-AA-AATG-TTCTAAACATGTTTC-ACGACAAACGCACGCAGTTAGGAGACA---ATTC--CAACA---------GC-TTAG--CTATATATGCCATTGGAATGAGAA---CGTCGA-CAG--GCAGTCTACCGGCATGTACCAATAC-C--CA-ATCGGG--AAAACCA-AGAAAATCCT-TGGACAAA---GAACATTTCAGTACC-GTGAGGA---AGTCT----GGCGACAT--TTTA--TCCAAGCTTT-GACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTATAAAAAAAAAAT--TTAAAAAAA-GAGGTTCTACACTGAGGAGGCCTCCACATGGCT-AGAACTGGTAC
gi|2 : AAGAGAA-----A-CTAGCGGCGATTCAAGC-TTTATTCGCTTA---CAAC-GATTGGGAT----------TG------GAATCCTGAAAGAGAAAGAAGTTGTTCCCGTAGCAACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCAACAGAATGCCCTGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTTGG-----TCGTCTGATGGACCCGAAAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGGACATGCGACAAAAGCG-A-TTCATTCTGG-CAGA-CATAC-GGAA--AAACGGGAA-TAATGC--AA-CTGTGTTATTCGGCAGGTCAGGGA--ATGGTTGCCA-AATCC-----CG---AGGG--A-------GCCTT---ACATGGG-A-CA---TGGT-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTAG-TTA-GTA---AAGCAAAAAAAA-------------ATAATTAATATG--GTTCTACAA-CAGGAAGGCCTCCATGTGGCTAAAAACTG--GAAACATTGT-TTTATTTGAGTGAAT--ATTTTAC-GTAGAAT--TTTAAAATTTATT-TGTCA--CGGACTATAATTAT-GAACCTA--ACAAG---CTGATCAT-CACAGATCCTGTGGCGAGAGAAA-CTTCTAACCGATG---CAGT-TCACA-GGTTCTGTAGTTTACAAGTTT---CCCGAGAATTTTGTTG-CATGCCTTGGACACCTACTA-CGTGGAGT-CATTCAACAATG-TTCTAAACATGTTTCCACAACAAACGCACGCAGTTAGGAGACG---ATCCTACAACATGAGGACGGGC-TTAG--CTGTAT--GCCATTGGAATGAGAA---CATCGA-CAG--GCTGTCTACCAGAATGTAACAATAC-C--CG-ACCGGG--AAAACCA-AGAAAATCCT-TGGACAGA---GAACATTTCAGTACC-GTGAGGA---TATCT----GGCAACAT--TTTA--TCCAAGCTTT-GACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTATTTAAAAAAAAT------------GAGGTTCTACACTGAGGAGG
gi|9 : AAGAGAA-----A-CTAGCGGCGATTCAAGC-TTTATTCGCTTA---CAAC-GATTGGGAT----------TG------GAATCCTGAAAGAGAAGAA-GTTGTTCCCGTAGCAACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCAACAGAATGCCCTGATTGCCTTTGTCA---GCCATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTTGG-----TGGTCTGATGGACCGAAA
gi|6 : tttccaAAGAGAA-----A-CTAGCGGCGATTCAAGC-TTTATTCGCTTA---CAAC-CATTGGGAT----------TG------GAATCCCGAAAGAA---------GTTCCCGTAGCAACGACACCAGCTTCCCCACCTAACATCCATA--TC--CATCCTCAACCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCA---GCCATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTTGG-----TGGCCTGATGGCCCTAAA
gi|27 : atccgAAGAGAATACTGAATTAGCGGCGATTCAAGC-TTTATTTGCTTA---TGCT-GATTAGGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccagagccatacaaatggacatgcaacaaaagcaattcatctggcagacatacggaacaaaacgggaaataatgcccaactgtgttattcggcagctcagggaatggttgccaaatcccgagggacagccttacttgagatatttgtggcag
gi|4 : ttccgAA-----AATTAACTGCGATTCAATC-TTTAATTATTTATTGCAAT-TAT---GAT----------TG------GCGTCCTGAAAGAGAA----TGTGTTCCTGTAATGACTACACCAGCGTCCC-ACCTAATTTACGTA--TT--CATCCTCAACCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCA---GCCATGCGGTTCTT--CA-AGA-ACAACAGGCcatggaa
gi|5 : gaAGCAGCGATTCCAGC-TTTATTTGCTCA---TTAC-GATTGAGACATAAGGACCCTA------TAGTCCTGAAATACAA----GAAATTCACATAGT-TCTACATGAAATT--CTA-GTAACAACCTCAGTTCCGCGTCTTCCATCATTGATCGATAGAATTCCTGAATTGTCTCCGTCA---GACATGC-AATCTTGTCAGGGACACAACAG---TTTTTGttgtgccataaaccaaaaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgagccatgcaaatgggcataaaatcaaagcaaattgtgtggcagacatacgaataaaatgggaattatcaagttaggagtggttcccccaatccttgcacgaggcatgtgtcagtgtttgtacatggatataaagtgtagtatagatgtataaggaccatagtcgttaaccttaaatgcgtaaaatgaaaagaaaaaattattctgcaacagagaggcctcacgtcgctagaagtggagatattgatttgctgagtgaataatttatcagatttttaaatgtatttttcattcatattgtaatggctaa
gi|21 : GCAGCGATTCAAGC-TTTATTTGTTTA---T--TCGATTGAGACATA-------TA------GAGTTCTGAAAGGCAA----GAAATTCACGTAGgaggtagcgccgattaaaaagaacacaaacaggcatcccgcaaaggagtctttttcagaaaaatcttcacgaagaaattgaacatgttagcctgtttaatgagaagctagtaccttagcagaaatttaaaaagacccatacaaataacatacatgtactgtaggacaaatgcggattcgcctgggcaaaacctactggtagaatgagaattaatgcccaattgtgcgattcatcggatcagggaatggttgccaaattccgatggacagtcttacatgggatatggcagtgattgtata
gi|15 : CGATTCAAGCCTTTATTTGCTTA---TTAC-GATTGAGACATATA-----TA------GAGTCCTGAAAGACAA----GAAATTCACGTAGtatattatataaatacagtatcacaa
gi|14 : CGATTCAAGCCTTTATTTGCTTA---TTAC-GATTGAGACA---------TATATATTGAGTCCTGAAA-AGAttcttaattctagtaacaacccaagttccacgttcctccattcat
gi|12 : caaACATAGTTC--CC--CAGCGTCTACCATC-ATCGATATAATTCTCGAATTGTCTCTGTCA---GACATGC-AATATTG-CAAGGA-ACATTA-ATAGTCTTGACCGTGTAGCTCGATAAACCcaatgaaattcactgtagtttctaattctagtaaacaacccaagtcacgtcctccattcatcga
gi|24 : agcagcgattcatactttgacgattgagacaaatagagtcatgtaggacaagaaattcTC-ATCAATATATTGCCCAGATTGTCTCCGTCAGCC---ATGT-GTTCTCG-CAAAGA-AGAACAGACAGTCTTGT-----TTGCCTGa
gi|6 : -AATGGACATGCAACAAAAGCA-A-TTCAT-CTGG-CAGA-CATAC-GGAACAAAACGGGAAATAATGCCCAA-CTGTGTTATTCGGCAGCTCAGGGA--ATGGTTGCCA-AATCC-----CG---AGGG--A-----CAGCCTT---ACTTGAG-A-TATT-TG-T-GGC--A---Gttaaaacagaa
gi|4 : atccgaagagaaactagcggcgattcaagctttattcgcttacaaccattgggattggaatcccgaaagaagttcccgtagcaacgacaccagcttccccacctaacatccatatccatcctcaaccatcatcgacagaatgccccgattgcctttgtcagccatgcgttcttgcagagaacaacagacaatcttggtggcctgatggccctaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccagagccataca-AATGGGCATAAAATCAAAGCA-A-ATTGT-GTGG-CAGA-CATAC-G-AATAAAATGGGAA-----------------TTAT----CAAGTTAGG-A--GTGGTTCCCCCAATCCTTGCACG---AGGC--ATGTGTCAGTGTTTGTACATGGATA-TAAAGTG-T-AGT--ATAGATGTAT-------AAGGA-CCATAGTCGTTAACCTTAAAT-GCGTA---AAATGAAAAGAA-------------A-----AA---ATTATTCTGCAA-CAGAGAGGCCTC-ACGTCGCTAGAA-GTG--GAGATATTGA-TTTGCT-GAGTGAAT--AATTTAT--CAG-AT--TTTTAAATGTATT-TTTCATTCATATTGTAAT
gi|8 : gaaaaattaactgcgattcaatctttaattatttattgcaattatgattggcgtcctgaaagagaatgtgttcctgtaatgactacaccagcgtcccacctaatttacgtattcatcctcaaccatcatcgacagaatgccccgattgcctttgtcagccatgcggttcttcaagaacaacaggcttgtgccataaaccaaaaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgagccatgca-AATTGACAT-----AGAAGAT-AATTCGT-ATAG-CAGA-CCTAC-GGCATTAAATAAGAAATAATGCCTGCTCTGTGCGATTCATCGGATCAGGGA--ATGGTTGCCA-AATCA-----CG---ATGG--G-----CAGTCTT-----------A-CA---TG-T-GGC--G---ATG-ATTCTATAAAA--A-CTGTAC--------CTTAggctaa
gi|3 : gacaaacgctaggtactttgatagaaaattcagagccatacaGACATGCGACAAAAGCT-----------GG-CAGA-CATAC-TGAACAAAACGGGAAATAATGCCCAA-CTGTGTTATTCAGCAGGTCAGGGA--ATGGATGCCA-AATGC-----CGCGGAGGAGAA-----CAGCCTT---ACATGGG-A-CAA--TG-TCGGCCAA---GTGGAT-------AA--AATTGTAG--------CTTAG-T-A-GTATATAAGCACAAAAAATAATAATACAAACA-----AAT--G--GTT-TCCAAGCAGGAAGGCCCTC------CTAGTG-CTACTGAAACATTGTGTTTATT--AGTGAATGAATTTTACAGTAGAGTGTTTTAAA--TTACTGTGTCAT-CGGCTTG--ATTATAGAACCTATAGCAAGTCTCTGATCATTCACAGATCCTCTGCTG----AAATCTTCTAACCGACTGGACAGTATCACGCAGTTC-G-AGTTT-C---TTTCGCATC-AGCTTTTTGT-GACAGGCCTTGGACACCTACTAGCGTGGAGTGCTTC-AC-AATGCTTCTAA-CATGTTTC-AAG-CAAA-GCACGCAGTTAGGAGATAGAGATTC--TAA-----------GCCTTAGGGCTGC-TATGCCGTTAGAAT-AGAATAGCGTCGAACAGTGGCAGTCTCGCGGCATGTACGCATACGCGGCG-ACCGGC--GAAACGC-AGAAAATCCTCTGAACCAG---GAGCATTTCAG-ACCTGTGAGGA---TACTTCATGGGCAACAT--TTTA--TCCAAGCTTTTGACTGA-GTGA-CACTATTGAAACTTGTATC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGT-----------AT--TTAAAAAAATGAAGTTCTACACTGAGGAGGCCTCCACGTGGCT-AGAAGTGGTACccgatgtaaacaagctgtatagtctgtaagcttcagt
gi|20 : ACAGACAACAAAAGTG-A-TTCGT-CTGG-CAGA-CATAT-GGAATAAAACAGGAAATAATGCTCAA-CTGTGTGATTCGG
gi|26 : acaaaaaattttggacagtgccatCAACAAAAGTG-A-TTCGT-CTGG-CAGA-CATAT-GGAATAAAACAGGAAATAATGCTCAA-CTGTGTGATTCGGa
gi|5 : aGACAAATGCGGA-TTCGC-CTGGGCAAAACCTACTGG--TAGAATGAGAATTAATGCCCAA-TTGTGCGATTCATCGGATCAGGGA--ATGGTTGCCA-AATTC-----CG---ATGG--A-----CAGTCTT---ACATGGG----A---TA-T-GGC--A---GTG-AT-------
gi|25 : agcagcgattccagctttatttgctcattacgattgagacataaggaccctatagtcctgaaatacaagaaattcacatagttctacatgaaattctagtaacaacctcagttccgcgtcttccatcattgatcgatagaattcctgaattgtctccgtcagacatgcaatcttgtcagggacacaacagtttttggaggtagcgccgattaaaaagaacacaaacaggcatcccgcaaaggagtctttttcagaaaaatcttcacgaagaaattgaacatgttagcctgtttaatgagaagctagtaccttagcagaaatttaaaaagacccatacaaataacatacatgtactgtagAAAA----A-TCCAT-ATGG-TAGA-CATAC-GGAAGTAAATGGGAAATAATGC-----CTGTGTAATTTGTCAGCTCAGAGA--ATtgtata
gi|19 : acgctgt-CTTTGTGATTCTCCAGACCAGGAA--ATAATTGCCA-AATCG-----CG---ATAG---------AGTCTA---ACA-AGG-A--A---T---------------------------A--A-CT-TAG--------CTTAG-C-A-AT------GTAAAAAGA
gi|13 : aatgtGTGTGATTCA-CAGACCAGGGAGAATAATTGCCA-AATTTG----CG---ATGG--A-----CAGTCTA---ACAAGGG-AATA---TA-TAGGG--A---AT--AT-------AA--A-CTTTAG--------CTTAG-C-A-ATA------TAAAAAGActgtggtttgt
gi|16 : cCAGATCAGGGA--ATGGTTACC-------------G---ATGG--A-----CAATCTT---ACATGGG-A-CA---TG-T---C--A---GTG-ATGGTATAAAA--A-CTAAAC--------CTTAC-C-A-ATA------TAAAAAGAA-------------ctacagtctgtaaacttacgttgtaagtaacagatcagtagtagcggtgatcgagc
gi|17 : catA--ATGGTTGCTA-AATTC-----AA---ATGG--G-----CGTTCTT---ACATGGG-A-TATG-TG-T-GGC--A---GTG-ATTGAATAAAA--A-GTGTAC--------CTTAG-C-A-AT------GTAAAAAtgtacactctgtaaactttcag
gi|23 : A--ATGGTTGCCA-AATCC-----TG---ATGG--A-----CAGTCTT------------------TT-T-GGC--A---GTG-AT-------ggttgaagtctgtaaactttt
gi|28 : A--CAGACTGCAACTAC-GAAACAA--GCAAT---TTCATCAT-CACAGATCCTGTGGCGGA-GAAA-CTTtgtatgggaaaaaaaatataccgtagttatgtaagaaggctatagtctgtaa
gi|29 : CGA-CAG--GCTGTCTACCAGAATGTAACAATAC-C--CG-ACCGGG--AAAACCA-AGAAAATC
gi|11 : CAATAC-C--GACGTCGGGGAAAAACCAGAAAAAATCCT-TGGACAGAAGAGAACATTTCAGTAGC-GTGAGGATTTAATCT-----GCAACATTCTTTATCTCCAGTTTTT-GACTAAGGTGACCAATGTGGAAACTTGTTTCAAATGCATTTAGGTAAGTGTAGATACATAGCCT-ATTATGAATAA-AAAGTGT
gi|22 : gtCT----GGCAACAT--TTTA--TCCAAGTTTT-GACTGG-GTGA-CACTATCGAAACTTGTTTC-AATGCTATAAG------GTAGATACATA-CCTTATTATG-ATAACAAAAT
gi|2 : AAAAAAAAATAATTAATAT-----GGTTCTACAACAGGAAGGCCTCCATGTGGCTAAAAACTGG
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TTGAAACATTCAGAGTCATAAAAGACTAGAAATTCACGTAGTTTCCCAGCTCTGCGTCTACCATTATCGATAAAAATCAGGAATTGTCTGTAAAGCATGAAATCTCGCACGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAACGGTATCTCACAGAGGAGAGCCTTTTTAAAAAAAATCACCAGGAAGAGAATTGAACAATGTTTTTCCCTCGAATAGCCTGAATTGACGAAAGCT
Unaligned ( gi|10 ): TTAATAACGATTTTCGAATTTATTTTGCTTATTACGAATGAAACATTAAGGTATCAAAGACTAGACAATTCCCGTAGTTTCCCAGTCTGCGTCTACCATTATCGATAAAAATAGGAATTGTCTGTAAGCACATATCGCCCAGGAAGTCTTGGTTGCTAATTAAACGGTAATCTCAAAGAGGAGAGCTTTTTAAAAAAATCACAGGAGAATTGACCCATGT
Unaligned ( gi|18 ): GGACAGTCTAACACGGAATAAAGTGTATATGAAAATAAACTTAGCTTAGTACTTTAAAAAAAACTATAGTCTATAAACTTAGGTTGTAAGTAAGAGATCAT
Unaligned ( gi|30 ): CCTGTGTAATTTGTCAGCTCAGAGAATA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222 22222222222222222 1111 111 11111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 11111 1111111 3333333 11111111 222222 6666666666666666666666666 1 1 1 2 1111 1 11 11 11 11 1 22 1 11 111 1 111 1 44444 2 22 2 3333 3333 2 33333333 2 11 888888888888888888888888888 22 22 333 1 11 11 11 11 1 111 1 111 1111 11 11 222222 111 888888888 4
lowQualScore : 3333333 7 1 88 99999999999999999 4 777 7 2222 33 4 333 0 4 4 5 77 77 5 3 2 888 5 5 0 5 1 4 44444444444 1 5 0 1 1 4 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 0000 4 4 4 4 2 1 4 3 1 4 1 44 3 11111 7777 3 999999 555 1 8888888 3 6 44 555 7 5555555 66 4 1 66666666 777 4 999999 4 9999999999999999999999999 2 1 0 0 2 0 0 0 7777 2 0 22 33 22 3 33 3 0 55 0 3 0 33 777 0 666 0 44444 3 44 3 7 7 7 4444 6 22 0000 1 3 44444444 3 7 6 00 6 888888888888888888888888888 11 77 0 6 777 0 33 4 3 3 8 11 11 11 8 0 777 3 0 777 7777 11 11 8 8 8 4 8 333333 8 6 8 777 000000000 6 0 1
lowQualScore : ....... . . .. ................. . ... . .... .. . ... . . . . .. .. . . . ... . . . . . . ........... . . . . . . ........................................................................................................ . .... . . . . . . . . . . . .. . ..... .... . ...... ... . ....... . . .. ... . ....... .. . . ........ ... . ...... . ......................... . . . . . . . . .... . . .. .. .. . .. . . .. . . . .. ... . ... . ..... . .. . . . . .... . .. .... . . ........ . . . .. . ........................... .. .. . . ... . .. . . . . .. .. .. . . ... . . ... .... .. .. . . . . . ...... . . . ... ......... . . .
lowQualScore : 2222222 3 0 22 11111111111111111 0 000 5 5555 44 0 000 7 0 3 1 99 99 0 4 0 888 0 0 2 0 4 0 55555555555 0 0 9 7 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 1111 0 0 0 0 8 1 8 6 8 6 6 22 3 77777 1111 3 666666 888 2 8888888 3 7 66 888 3 5555555 11 4 9 11111111 888 4 333333 4 0000000000000000000000000 5 0 0 0 5 2 0 0 0000 5 0 55 88 55 2 88 2 0 55 8 2 0 88 555 0 888 0 33333 7 00 7 3 3 3 0000 7 00 3333 0 3 00000000 3 3 7 33 7 333333333333333333333333333 77 33 7 7 333 0 88 0 0 0 0 00 00 00 0 0 555 2 0 555 0000 00 00 0 0 0 6 0 000000 0 0 0 777 000000000 0 0 0
consensus : AAGAGAA-----AACTAGCGGCGATTCAAGC-TTTATTCGCTTACGACGATTGGGACATATG----G-------AGTCCTG-AAAG---ACAA----GAAGTTC-CCGTAGCGACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTNGC-CCGATGGACCNAAAANAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AATGGACATGCGACAAAAG-CG-ATTCGT-CTGG-CAGA-CATAC-GGAATAAAACGGGAAATAATGCCCAA-CTGTGTGATTCGGCAGATCAGGGA--ATGGTTGCCA-AATCC-----CGA----TG-GA------CAGTCTT---ACATGGG-ACA---TG-T-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GC-AGTA---AAGTAAA-AAGAA-------------A------A-A-TGGTTCTACAA-CAGGAAGGCC-TCCACGT-GGCTAGAA-CTGGAAACATTGT-TTTATT-GAGTGAAT--ATTTTAC-GTAGAAT--TTTAAAATTTATT-TGTCA-TCGGACTGTAATTAC-GAACCTA--GCAAG---CTGATCAT-CACAGATCCTGTGGCGGG-GAAA-CTTCTAACCGATT---CAGT-TCACG-GGTTC-GTAGTTTACAAGTTTC--ACCGAGNATTTTGT-GGCATGCCTTGGACACCTACTA-CGTGGAGT-CATT-AACAATG-TTCTAAACATGTTTCCACGACAAACGCACGCAGTTAGGAGACG--GATTCTACAACA-G------GGCCTTAG-GCTGC-TATGCCGTTGGAATGAGAA---CGTCG-ACA--GGCNGTCTACCGGNATGTANCAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATCCT-TGGACAGA---GAACATTTCAGTACC-GTGAGGAT---ATCT----GGCAACAT--TTTA--TCCAAGC-TTTGACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-T-TAAAAAAAAT---------GAGGTTCTACACTGAGGAGGCCTCCACGTGGCT-AGAANTGGTAC
Reference ( family-3727 ) : AAGAGAA-----AACTAGCGGCGATTCAAGC-TTTATTCGCTTACGACGATTGGGACATATG----G-------AGTCCTG-AAAG---AGAA----GNNGTTC-CCGTAGCGACGACACCAGCTTCCCCACCTAACATCCTTA--TC--CATCCTCAACCATC-ATCGACAGAATGCCCCGATTGCCTCCGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTNGC-CTGATGGACCNAAAAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AATGGACATGCGACAAAAG-CG-ATTCGT-CTGG-CAGA-CATAC-GGAATAAAACGGGAAATAATGCCCAA-CTGTGTGATTCGGCAGATCAGGGA--ATGGTTGCCA-AATCC-----CGA----TG-GA------CAGTCTT---ACATGGG-ACA---TG-T-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GC-AGTA---AAGTAAA-AAGAA-------------A------A-A-TGGTTCTNCAA-CAGGAAGGCC-TCCACGT-G-CTAGAA-CTGGAAACATTGT-TTTATT-GAGTGAAT--ATTTTAC-GTAGAAT--TTTAAAATTTATT-TGTCA-TCGGACTGTAATTAC-GAACCTA--GCAAG---CTGATCAT-CACAGATCCTGTGGCGGG-GAAA-CTTCTAACCGACGGGACAGTATCACGCGGTTCTGTAGTTTACAAGTTTCGCNCCGAGNNTTTTGTTGACANGCCTTGGACACCTACTAGCGTGGAGTGCNTCCANCAATGCTTCTAAACATGTTTCCACGACAAACGCACGCAGTTAGGAGACGGAGATCCTACAACATGAGGACGGGCCTTAGGGCTGCATATGCCGTTGGAATGAGAATAGCGTCG-ACA--GGCTGTCTACCGGAATGTAACAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATCCT-TGGACAGA---GAACATTTCAGTACC-GTGAGGAT---ATCT----GGCAACAT--TTTA--TCCAAGC-TTTGACTGA-GTGA-CACTATCGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-T-TAAAAAAAATTT----AAAGAGGTTCTACACCGAGGAGGCCTCCACGTGGCTAAGAANTGGTAC
gi|1 : AAGAGAA-----AACTAGCGGCGATTCAAGC-TTTATTCGCTTACAATGATTGGGAT---TA----G-------AATCCTG-AAAG---AGAA----GTTGTTC-CCGTAGGAACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCGACAGAATGCCCCGATTTCCTTTGTCAGCCGCCATGC-GTTCTTG-CAGAGA-ACAACAGACATTCTT----G-----ATGGC-CTGATGGACCTAAAACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AATGGACATGCGACAAAAG-CT-ATTCAT-CTGG-CAGA-CTTAC-GGAACAAAACGGGAAACAATGCCCAA-CTGTGTTATTCGGCAGGTCAGGGA--ATGGTTGCCA-AATCC-----CGA----GG-GA------CAGCCTT---ACATGGG-ACA---TG-T-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GT-AGTA---AAGCAAA-AAAAA-------------A------A-A--GGTTCTACAA-CAGGAAGGCC-TCCACGT-GGCTAGTA-CTGGAAACATTGT-TTTATT-GAGTGAAT--ATTTTAT-GTAGAAT--TTTAAAATTTATT-TGTCA--CGGATTGTAATTAC-GAACCTA--GCAAG---CTGAACAA-CACAGATCCTGTGGCGGG-GAAA-CTTCTAACTGATT---CAGT-TCACA-GGTTC-GTAGTTTACAAGTTT---ACCGAGGATTTTG--AGCATACCGTGTATACCTACTA-CTAGGAGT-CATTAA--AATG-TTCTAAACATGTTT-CACGACAAACGCACGCAGTTAGGAGAC---AATTC--CAACA-G---------CTTA--GCTATATATGCCATTGGAATGAGAA---CGTCG-ACA--GGCAGTCTACCGGCATGTACCAATAC-C--CAAT--CGGG--AAAACCA-AGAAAATCCT-TGGACAAA---GAACATTTCAGTACC-GTGAGGAA---GTCT----GGCGACAT--TTTA--TCCAAGC-TTTGACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-TAAAAAAAAAATTTAAAAAAAGAGGTTCTACACTGAGGAGGCCTCCACATGGCT-AGAACTGGTAC
gi|11 : CAATAC-C---GACGTCGGGGAAAAACCAGAAAAAATCCT-TGGACAGAAGAGAACATTTCAGTAGC-GTGAGGATTTAATCT-----GCAACATTCTTTATCTCCAGTT-TTTGACTAAGGTGACCAATGTGGAAACTTGTTTCAAATGCATTTAGGTAAGTGTAGATACATAGCCT-ATTATGAATAA-AAAGTGT
gi|12 : gtAGCAGCGATTCATAC-TTT----------GACGATTGAGACAAATA----G-------AGTCATG-TAGG---ACAA----GAAATTC-ACATAG-------------TTCCCCA----GCGTCT-----------------ACCATC-ATCGATATAATTCTCGAATTGTCTCTGTCAGAC---ATGC-AATATTG-CAAGGA-ACATTA-ATAGTCTT----GACCGTGTAGC-TCGATAAACC
gi|13 : GTGTGATTCA-CAGACCAGGGAGAATAATTGCCA-AATTTG----CGA----TG-GA------CAGTCTA---ACAAGGGAATA---TA-TAGGG--A---AT--AT-------AA--A-CTTTAG--------CTTA---GC-AATA------TAAA-AAGAa
gi|14 : cCGATTCAAGCCTTTATTTGCTTATTACGATTGAGACATATATATTG-------AGTCCTGAAAAG---ACAAT---GAAATTCACTGTAGctacagtctgtaaacttacgttgtaagtaacagatcagtagtagcggtgatcgagc
gi|15 : caaCGATTCAAGCCTTTATTTGCTTATTACGATTGAGACATATATA--G-------AGTCCTG-AAAG---ACAA----GAAATTC-ACGTAGtttctaattctagtaaacaacccaagtcacgtcctccattcatcga
gi|16 : CAGATCAGGGA--ATGGTTACC-------------GA----TG-GA------CAATCTT---ACATGGG-ACA---TG-T---C--A---GTG-ATGGTATAAAA--A-CTAAAC--------CTTA---CC-AATA------TAAA-AAGAA-------------ttcttaattctagtaacaacccaagttccacgttcctccattcat
gi|17 : catA--ATGGTTGCTA-AATTC-----AAA----TG-GG------CGTTCTT---ACATGGG-ATATG-TG-T-GGC--A---GTG-ATTGAATAAAA--A-GTGTAC--------CTTA---GC-AAT------GTAAA-AAGtgtacactctgtaaactttcag
gi|19 : -CTTTGTGATTCTCCAGACCAGGAA--ATAATTGCCA-AATCG-----CGA----TA-G--------AGTCTA---ACA-AGG-A-A---T---------------------------A--A-CT-TAG--------CTTA---GC-AAT------GTAAA-AAGAgttgaagtctgtaaactttt
gi|2 : aatgtAAGAGAA-----A-CTAGCGGCGATTCAAGC-TTTATTCGCTTACAACGATTGGGAT---TG----G-------AATCCTG-AAAG---AGAAAGAAGTTGTTC-CCGTAGCAACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCAACAGAATGCCCTGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTCGT-CTGATGGACCCGAAAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGGACATGCGACAAAAG-CG-ATTCATTCTGG-CAGA-CATAC-GGAA--AAACGGGAA-TAATGC--AA-CTGTGTTATTCGGCAGGTCAGGGA--ATGGTTGCCA-AATCC-----CGA----GG-GA--------GCCTT---ACATGGG-ACA---TGGT-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GTTAGTA---AAGCAAA-AAAAA-------------ATAATTAATA-TGGTTCTACAA-CAGGAAGGCC-TCCATGT-GGCTAAAAACTGGAAACATTGT-TTTATTTGAGTGAAT--ATTTTAC-GTAGAAT--TTTAAAATTTATT-TGTCA--CGGACTATAATTAT-GAACCTA--ACAAG---CTGATCAT-CACAGATCCTGTGGCGAGAGAAA-CTTCTAACCGATG---CAGT-TCACA-GGTTCTGTAGTTTACAAGTTTC---CCGAGAATTTTGTTG-CATGCCTTGGACACCTACTA-CGTGGAGT-CATTCAACAATG-TTCTAAACATGTTTCCACAACAAACGCACGCAGTTAGGAGACG---ATCCTACAACATGAGGACGGGC-TTAG--CTG--TATGCCATTGGAATGAGAA---CATCG-ACA--GGCTGTCTACCAGAATGTAACAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATCCT-TGGACAGA---GAACATTTCAGTACC-GTGAGGAT---ATCT----GGCAACAT--TTTA--TCCAAGC-TTTGACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTATT-TAAAAAAAAT---------GAGGTTCTACACTGAGGAGGctgtggtttgt
gi|20 : ACAGACAACAAAAG-TG-ATTCGT-CTGG-CAGA-CATAT-GGAATAAAACAGGAAATAATGCTCAA-CTGTGTGATTCGG
gi|21 : acaaaaaattttggacagtgccatGCAGCGATTCAAGC-TTTATTTGTTTATT-CGATTGAGACATATA----G-------AGTTCTG-AAAG---GCAA----GAAATTC-ACGTAGa
gi|22 : CT----GGCAACAT--TTTA--TCCAAGT-TTTGACTGG-GTGA-CACTATCGAAACTTGTTTC-AATGCTATAAG------GTAGATACATA-CCTTATTATG-ATAACAAAATtatattatataaatacagtatcacaa
gi|23 : A--ATGGTTGCCA-AATCC-----TGA----TG-GA------CAGTCTT-----------------TT-T-GGC--A---GTG-AT-------
gi|24 : TC-ATCAATATATTGCCCAGATTGTCTCCGTCAGCC---ATGT-GTTCTCG-CAAAGA-AGAACAGACAGTCTT----G-----TTTGC-CTGtgtatgggaaaaaaaatataccgtagttatgtaagaaggctatagtctgtaa
gi|25 : AAAA-----ATCCAT-ATGG-TAGA-CATAC-GGAAGTAAATGGGAAATAATGC-----CTGTGTAATTTGTCAGCTCAGAGA--ATttaaaacagaa
gi|26 : acgctgtCAACAAAAG-TG-ATTCGT-CTGG-CAGA-CATAT-GGAATAAAACAGGAAATAATGCTCAA-CTGTGTGATTCGG
gi|27 : aAAGAGAATACTGAATTAGCGGCGATTCAAGC-TTTATTTGCTTATGCTGATTAGGACAT
gi|28 : ttccgCAGACTGCAACTAC-GAAACAA--GCAAT---TTCATCAT-CACAGATCCTGTGGCGGA-GAAA-CTTggaa
gi|29 : aCG-ACA--GGCTGTCTACCAGAATGTAACAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATC
gi|3 : GACATGCGACAAAAG-C----------TGG-CAGA-CATAC-TGAACAAAACGGGAAATAATGCCCAA-CTGTGTTATTCAGCAGGTCAGGGA--ATGGATGCCA-AATGC-----CG-----CG-GAGGAGAACAGCCTT---ACATGGG-ACAA--TG-TCGGCCAA---GTGGAT-------AA--AATTGTAG--------CTTA---GT-AGTATATAAGCACA-AAAAATAATAATACAAACA------A-A-TGGTT-TCCAAGCAGGAAGGCCCTCCTAGT-G-CTA----CTG-AAACATTGTGTTTATT--AGTGAATGAATTTTACAGTAGAGTGTTTTAAA--TTACTGTGTCA-TCGG-CT-TGATTATAGAACCTATAGCAAGTCTCTGATCATTCACAGATCCTCTGCTG----AAATCTTCTAACCGACTGGACAGTATCACGCAGTTC-G-AGTTT-C---TTTCGCATC-AGCTTTTTGT-GACAGGCCTTGGACACCTACTAGCGTGGAGTGCTTC--ACAATGCTTCT-AACATGTTTCAA--GCAAA-GCACGCAGTTAGGAGATAGAGATTCTA-------------AGCCTTAGGGCTGC-TATGCCGTTAGAAT-AGAATAGCGTCGAACAGTGGCAGTCTCGCGGCATGTACGCATACGCGGCGAC--CGGC--GAAACGC-AGAAAATCCTCTGAACCAG---GAGCATTTCAG-ACCTGTGAGGAT---ACTTCATGGGCAACAT--TTTA--TCCAAGCTTTTGACTGA-GTGA-CACTATTGAAACTTGTATC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-T-TTAAAAAAAT---------GAAGTTCTACACTGAGGAGGCCTCCACGTGGCT-AGAAGTGGTAC
gi|4 : AA-----AATTAACTGCGATTCAATC-TTTAATTATTTATTGCAATTATGAT---TG----G-------CGTCCTG-AAAG---AGAA----TGTGTTC-CTGTAATGACTACACCAGCGTCCC-ACCTAATTTACGTA--TT--CATCCTCAACCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCAGCC---ATGCGGTTCTT--CA-AGA-ACAACAGG----CTT----G-------TGC-C--ATAAACCAAAA
gi|4 : ga-AATGGGCATAAAATCAAAG-CA-AATTGT-GTGG-CAGA-CATAC-G-AATAAAATGGGAATTA----TCAA-----GTTA-------------GGA--GTGGTTCCCCCAATCCTTGCACGAGGCATGTGT------CAGTGTTTGTACATGGATATAAAGTG-T-AGT--ATAGATGTAT-------AAGGA-CCATAGTCGTTAACCTTAAATGC--GTA---AAATGAA-AAGAA-------------A------A-AATTATTCTGCAA-CAGAGAGGCC-TC-ACGTCG-CTAGAA-GTGGAGATATTGA-TTTGCT-GAGTGAAT--AATTTAT--CAG-AT--TTTTAAATGTATT-TTTCATTCATATTGTAATggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgagccatgcaaatgggcataaaatcaaagcaaattgtgtggcagacatacgaataaaatgggaattatcaagttaggagtggttcccccaatccttgcacgaggcatgtgtcagtgtttgtacatggatataaagtgtagtatagatgtataaggaccatagtcgttaaccttaaatgcgtaaaatgaaaagaaaaaattattctgcaacagagaggcctcacgtcgctagaagtggagatattgatttgctgagtgaataatttatcagatttttaaatgtatttttcattcatattgtaatggctaa
gi|5 : gaaaaattaactgcgattcaatctttaattatttattgcaattatgattggcgtcctgaaagagaatgtgttcctgtaatgactacaccagcgtcccacctaatttacgtattcatcctcaaccatcatcgacagaatgccccgattgcctttgtcagccatgcggttcttcaagaacaacaggcttgtgccataaaccaaaaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgagccatgcaAGCAGCGATTCCAGC-TTTATTTGCTCATTACGATTGAGACATAAG----GACCCTATAGTCCTG-AAAT---ACAA----GAAATTC-ACATAGTT-CTACATGAAATT--CTA-GTAACAACCTCAGTTCCGCGTCTTCCATCATTGATCGATAGAATTCCTGAATTGTCTCCGTCAGAC---ATGC-AATCTTGTCAGGGACACAACAG----TTTTTGGAG-----GTAGCGCCGAT----TAAAAAGAACAggctaa
gi|5 : GACAAATG-CGGATTCGC-CTGGGCAAAACCTACTGG--TAGAATGAGAATTAATGCCCAA-TTGTGCGATTCATCGGATCAGGGA--ATGGTTGCCA-AATTC-----CGA----TG-GA------CAGTCTT---ACATGGG---A---TA-T-GGC--A---GTG-AT-------caaacaggcatcccgcaaaggagtctttttcagaaaaatcttcacgaagaaattgaacatgttagcctgtttaatgagaagctagtaccttagcagaaatttaaaaagacccatacaaataacatacatgtactgtaggacaaatgcggattcgcctgggcaaaacctactggtagaatgagaattaatgcccaattgtgcgattcatcggatcagggaatggttgccaaattccgatggacagtcttacatgggatatggcagtgattgtata
gi|6 : agcagcgattccagctttatttgctcattacgattgagacataaggaccctatagtcctgaaatacaagaaattcacatagttctacatgaaattctagtaacaacctcagttccgcgtcttccatcattgatcgatagaattcctgaattgtctccgtcagacatgcaatcttgtcagggacacaacagtttttggaggtagcgccgattaaaaagaacacaaacaggcatcccgcaaaggagtctttttcagaaaaatcttcacgaagaaattgaacatgttagcctgtttaatgagaagctagtaccttagcagaaatttaaaaagacccatacaaataacatacatgtactgtagAAGAGAA-----A-CTAGCGGCGATTCAAGC-TTTATTCGCTTACAACCATTGGGAT---TG----G-------AATCCCG-AAAG---A---------AGTTC-CCGTAGCAACGACACCAGCTTCCCCACCTAACATCCATA--TC--CATCCTCAACCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTGGC-CTGATGGCCCTAAAtgtata
gi|6 : atccg-AATGGACATGCAACAAAAG-CA-ATTCAT-CTGG-CAGA-CATAC-GGAACAAAACGGGAAATAATGCCCAA-CTGTGTTATTCGGCAGCTCAGGGA--ATGGTTGCCA-AATCC-----CGA----GG-GA------CAGCCTT---ACTTGAG-ATATT-TG-T-GGC--A---Gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccagagccatacaaatggacatgcaacaaaagcaattcatctggcagacatacggaacaaaacgggaaataatgcccaactgtgttattcggcagctcagggaatggttgccaaatcccgagggacagccttacttgagatatttgtggcag
gi|8 : atccgaagagaaactagcggcgattcaagctttattcgcttacaaccattgggattggaatcccgaaagaagttcccgtagcaacgacaccagcttccccacctaacatccatatccatcctcaaccatcatcgacagaatgccccgattgcctttgtcagccatgcgttcttgcagagaacaacagacaatcttggtggcctgatggccctaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccagagccataca-AATTGACAT-----AGAAGATA-ATTCGT-ATAG-CAGA-CCTAC-GGCATTAAATAAGAAATAATGCCTGCTCTGTGCGATTCATCGGATCAGGGA--ATGGTTGCCA-AATCA-----CGA----TG-GG------CAGTCTT-----------ACA---TG-T-GGC--G---ATG-ATTCTATAAAA--A-CTGTAC--------CTTA---CC-GAT------GTAAACAAG
gi|9 : gacaaacgctaggtactttgatagaaaattcagagccatacaAAGAGAA-----A-CTAGCGGCGATTCAAGC-TTTATTCGCTTACAACGATTGGGAT---TG----G-------AATCCTG-AAAGAGAAGAA----GTTGTTC-CCGTAGCAACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCAACAGAATGCCCTGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTGGT-CTGATGGACCGAAActgtatagtctgtaagcttcagt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TTGAAACATTCAGAGTCATAAAAGACTAGAAATTCACGTAGTTTCCCAGCTCTGCGTCTACCATTATCGATAAAAATCAGGAATTGTCTGTAAAGCATGAAATCTCGCACGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAACGGTATCTCACAGAGGAGAGCCTTTTTAAAAAAAATCACCAGGAAGAGAATTGAACAATGTTTTTCCCTCGAATAGCCTGAATTGACGAAAGCT
Unaligned ( gi|10 ): TTAATAACGATTTTCGAATTTATTTTGCTTATTACGAATGAAACATTAAGGTATCAAAGACTAGACAATTCCCGTAGTTTCCCAGTCTGCGTCTACCATTATCGATAAAAATAGGAATTGTCTGTAAGCACATATCGCCCAGGAAGTCTTGGTTGCTAATTAAACGGTAATCTCAAAGAGGAGAGCTTTTTAAAAAAATCACAGGAGAATTGACCCATGT
Unaligned ( gi|18 ): GGACAGTCTAACACGGAATAAAGTGTATATGAAAATAAACTTAGCTTAGTACTTTAAAAAAAACTATAGTCTATAAACTTAGGTTGTAAGTAAGAGATCAT
Unaligned ( gi|30 ): CCTGTGTAATTTGTCAGCTCAGAGAATA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222 222222222222222222 111 11111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 11111 1111111 3333333 11111111 222222 6666666666666666666666 1 1 1111 1 11 11 11 11 1 22 1 11 111 1 111 1 222 1 11 1 22222 11 1 1 1 1111 7777777777777777777777777 3333333 222 1 11 11 11 11 1 111 1 111 1111 11 11 222222 1 55555555555
lowQualScore : 3333333 6 44 99 0 777777777777777777 3 3 7 3 666 666 3 333 0 2 4 1 999999 0 5 3 888 5 5 0 5 1 4 44444444444 1 5 6 1 1 1 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 0000 4 4 4 4 2 1 4 3 1 4 1 44 3 11111 7777 3 999999 555 1 8888888 3 6 44 555 7 5555555 66 4 1 66666666 777 4 999999 4 5 4444444444444444444444 3 2 0 0 0 2 0 2 7777 2 0 22 33 22 3 33 3 0 55 0 3 0 33 777 0 666 0 333 3 44 3 7 7 7 77777 6 1 11 3 3 6 3 7 6666 6 7777777777777777777777777 8888888 0 6 333 0 33 1 1 1 8 11 11 11 8 0 777 3 0 777 7777 11 11 8 8 8 8 333333 8 6 8 3 77777777777 1
lowQualScore : ....... . .. .. . .................. . . . . ... ... . ... . . . . ...... . . . ... . . . . . . ........... . . . . . . ........................................................................................................ . .... . . . . . . . . . . . .. . ..... .... . ...... ... . ....... . . .. ... . ....... .. . . ........ ... . ...... . . ...................... . . . . . . . . .... . . .. .. .. . .. . . .. . . . .. ... . ... . ... . .. . . . . ..... . . .. . . . . . .... . ......................... ....... . . ... . .. . . . . .. .. .. . . ... . . ... .... .. .. . . . . ...... . . . . ........... .
lowQualScore : 2222222 7 88 22 1 444444444444444444 6 6 3 6 444 444 6 000 7 4 3 6 666666 4 0 4 888 0 0 2 0 4 0 55555555555 0 0 2 7 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 1111 0 0 0 0 8 1 8 6 8 6 6 22 3 77777 1111 3 666666 888 2 8888888 3 7 66 888 3 5555555 11 4 9 11111111 888 4 333333 4 7 8888888888888888888888 2 5 8 0 0 5 2 5 0000 5 0 55 88 55 2 88 2 0 55 8 2 0 88 555 0 888 0 333 3 00 3 3 3 3 33333 7 0 00 3 3 7 3 3 3333 7 7777777777777777777777777 3333333 7 7 333 0 88 0 0 0 0 00 00 00 0 0 555 2 0 555 0000 00 00 0 0 0 0 000000 0 0 0 3 77777777777 0
consensus : AAGAGAA-----AACTAGCGGCGATTCAAGC-TTTATTC-GCTTATNACGATTGGGACAT-ATG----G-------AGTCCTG-AAAGACAA-GA-A---GTT---C-CCGTAGCGACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTNGC-CCGATGGACCNAAAANAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AATGGACATGCGACAAAAG-CG-ATTCGT-CTGG-CAGA-CATAC-GGAATAAAACGGGAAATAATGCCCAA-CTGTGTGATTCGGCAGATCAGGGA--ATGGTTGCCA-AATCC-----CGA----TG-GA------CAGTCTT---ACATGGG-ACA---TG-T-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GC-AGTA---AAGTAAA-AAGA-A-------------A------A-ATGGTTCTACAA-CAGGAAGGCC-TCCACGTGGCTAGAA-CTGGAAACATTGT-TTTATT-GAGTGAAT--ATTTTAC-GTAGAAT--TTTAAAATTTATT-TGTCA-TCGGACTGTAATTAC-GAACCTA--GCAAG---CTGATCAT-CACAGATCCTGTGGCGGG-GAAA-CTTCTAACCGATT---CAGT-TCACG-GGTTC-GTAGTTTACAAGTTTCGC--CGAGNATTTTGTNGCATGCCTTGGACACCTACTA-CGTGGAGTCATT-AACAATG-TTCTAAACATGTTTC-ACGACAAACGCACGCAGTTAGGAGACG-A--TTCTACAACA---GGGC---CTTAG--CTGC-TATGCCGTTGGAATGAGAA---CGTCGA-CAG--GCNGTCTACCGGNATGTANCAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATCCT-TGGACAGA---GAACATTTCAGTACC-GTGAGGAT---ATCT----GGCAACAT--TTTA--TCCAAGCTTT-GACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-TTAAAAAAAA---T-------GAGGTTCTACACTGAGGAGGCCTCCACGTGGCTAGAANTGGTAC
Reference ( family-3727 ) : AAGAGAA-----AACTAGCGGCGATTCAAGC-TTTATTC-GCTTACGACGATTGGGACAT-ATG----G-------AGTCCTG-AAAGACAA-GA-A---GTT---C-CCGTAGCGACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTNGC-CCGATGGACCNAAAANAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AATGGACATGCGACAAAAG-CG-ATTCGT-CTGG-CAGA-CATAC-GGAATAAAACGGGAAATAATGCCCAA-CTGTGTGATTCGGCAGATCAGGGA--ATGGTTGCCA-AATCC-----CGA----TG-GA------CAGTCTT---ACATGGG-ACA---TG-T-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GC-AGTA---AAGTAAA-AAGA-A-------------A------A-ATGGTTCTACAA-CAGGAAGGCC-TCCACGTGGCTAGAA-CTGGAAACATTGT-TTTATT-GAGTGAAT--ATTTTAC-GTAGAAT--TTTAAAATTTATT-TGTCA-TCGGACTGTAATTAC-GAACCTA--GCAAG---CTGATCAT-CACAGATCCTGTGGCGGG-GAAA-CTTCTAACCGATT---CAGT-TCACG-GGTTC-GTAGTTTACAAGTTTCAC--CGAGNATTTTGTGGCATGCCTTGGACACCTACTA-CGTGGAGTCATT-AACAATG-TTCTAAACATGTTTCCACGACAAACGCACGCAGTTAGGAGACGGA--TTCTACAACA---GGGC---CTTAGG-CTGC-TATGCCGTTGGAATGAGAA---CGTCGA-CAG--GCNGTCTACCGGNATGTANCAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATCCT-TGGACAGA---GAACATTTCAGTACC-GTGAGGAT---ATCT----GGCAACAT--TTTA--TCCAAGCTTT-GACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-TTAAAAAAAA---T-------GAGGTTCTACACTGAGGAGGCCTCCACGTGGCTAGAANTGGTAC
gi|1 : AAGAGAA-----AACTAGCGGCGATTCAAGC-TTTATTC-GCTTACAATGATTGGGAT----TA----G-------AATCCTG-AAAGAGAA-GT-T---GTT---C-CCGTAGGAACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCGACAGAATGCCCCGATTTCCTTTGTCAGCCGCCATGC-GTTCTTG-CAGAGA-ACAACAGACATTCTT----G-----ATGGC-CTGATGGACCTAAAACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AATGGACATGCGACAAAAG-CT-ATTCAT-CTGG-CAGA-CTTAC-GGAACAAAACGGGAAACAATGCCCAA-CTGTGTTATTCGGCAGGTCAGGGA--ATGGTTGCCA-AATCC-----CGA----GG-GA------CAGCCTT---ACATGGG-ACA---TG-T-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GT-AGTA---AAGCAAA-AAAA-A-------------A------A-A-GGTTCTACAA-CAGGAAGGCC-TCCACGTGGCTAGTA-CTGGAAACATTGT-TTTATT-GAGTGAAT--ATTTTAT-GTAGAAT--TTTAAAATTTATT-TGTCA--CGGATTGTAATTAC-GAACCTA--GCAAG---CTGAACAA-CACAGATCCTGTGGCGGG-GAAA-CTTCTAACTGATT---CAGT-TCACA-GGTTC-GTAGTTTACAAGTTT-AC--CGAGGATTTTG-AGCATACCGTGTATACCTACTA-CTAGGAGTCATT-AA-AATG-TTCTAAACATGTTTC-ACGACAAACGCACGCAGTTAGGAGACA-A--TTC--CAACA---G------CTTAG--CTATATATGCCATTGGAATGAGAA---CGTCGA-CAG--GCAGTCTACCGGCATGTACCAATAC-C--CAAT--CGGG--AAAACCA-AGAAAATCCT-TGGACAAA---GAACATTTCAGTACC-GTGAGGAA---GTCT----GGCGACAT--TTTA--TCCAAGCTTT-GACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-TAAAAAAAAAATTTAAAAAAAGAGGTTCTACACTGAGGAGGCCTCCACATGGCTAGAACTGGTAC
gi|10 : -TTTATTTTGCTTATTACGAATGAAACATTAAG----G-------TATC----AAAGACTA-GACA---ATT---C-CCGTAG
gi|11 : ttaataacgattttcgaaCAATAC-C---GACGTCGGGGAAAAACCAGAAAAAATCCT-TGGACAGAAGAGAACATTTCAGTAGC-GTGAGGATTTAATCT-----GCAACATTCTTTATCTCCAGTTTTT-GACTAAGGTGACCAATGTGGAAACTTGTTTCAAATGCATTTAGGTAAGTGTAGATACATAGCCT-ATTATGAATAA-AAAGTGTtttcccagtctgcgtctaccattatcgataaaaataggaattgtctgtaagcacatatcgcccaggaagtcttggttgctaattaaacggtaatctcaaagaggagagctttttaaaaaaatcacaggagaattgacccatgt
gi|12 : gtAGCAGCGATTCATAC-TTT-----------GACGATTGAGACAA-ATA----G-------AGTCATG-TAGGACAA-GA-A---ATT---C-ACATAG-------------TTCCCCA----GCGTC--TA---------------CCATC-ATCGATATAATTCTCGAATTGTCTCTGTCAGAC---ATGC-AATATTG-CAAGGA-ACATTA-ATAGTCTT----GACCGTGTAGC-TCGATAAACC
gi|13 : GTGTGATTCA-CAGACCAGGGAGAATAATTGCCA-AATTTG----CGA----TG-GA------CAGTCTA---ACAAGGGAATA---TA-TAGGG--A---AT--AT-------AA--A-CTTTAG--------CTTA---GC-AATA------TAAA-AAGA-a
gi|14 : cCGATTCAAGCCTTTATTT-GCTTATTACGATTGAGACAT-ATATATTG-------AGTCCTGAAAAGACAATGA-A---ATT---CACTGTAGctacagtctgtaaacttacgttgtaagtaacagatcagtagtagcggtgatcgagc
gi|15 : caaCGATTCAAGCCTTTATTT-GCTTATTACGATTGAGACAT-ATATA--G-------AGTCCTG-AAAGACAA-GA-A---ATT---C-ACGTAGtttctaattctagtaaacaacccaagtcacgtcctccattcatcga
gi|16 : CAGATCAGGGA--ATGGTTACC-------------GA----TG-GA------CAATCTT---ACATGGG-ACA---TG-T---C--A---GTG-ATGGTATAAAA--A-CTAAAC--------CTTA---CC-AATA------TAAA-AAGA-A-------------ttcttaattctagtaacaacccaagttccacgttcctccattcat
gi|17 : catA--ATGGTTGCTA-AATTC-----AAA----TG-GG------CGTTCTT---ACATGGG-ATATG-TG-T-GGC--A---GTG-ATTGAATAAAA--A-GTGTAC--------CTTA---GC-AAT------GTAAA-AAGtgtacactctgtaaactttcag
gi|19 : -CTTTGTGATTCTCCAGACCAGGAA--ATAATTGCCA-AATCG-----CGA----TA-G--------AGTCTA---ACA-AGG-A-A---T---------------------------A--A-CT-TAG--------CTTA---GC-AAT------GTAAA-AAGA-gttgaagtctgtaaactttt
gi|2 : aatgtAAGAGAA-----A-CTAGCGGCGATTCAAGC-TTTATTC-GCTTACAACGATTGGGAT----TG----G-------AATCCTG-AAAGAGAAAGA-A---GTTGTTC-CCGTAGCAACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCAACAGAATGCCCTGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTCGT-CTGATGGACCCGAAAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGGACATGCGACAAAAG-CG-ATTCATTCTGG-CAGA-CATAC-GGAA--AAACGGGAA-TAATGC--AA-CTGTGTTATTCGGCAGGTCAGGGA--ATGGTTGCCA-AATCC-----CGA----GG-GA--------GCCTT---ACATGGG-ACA---TGGT-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GTTAGTA---AAGCAAA-AAAA-A-------------ATAATTAATATGGTTCTACAA-CAGGAAGGCC-TCCATGTGGCTAAAAACTGGAAACATTGT-TTTATTTGAGTGAAT--ATTTTAC-GTAGAAT--TTTAAAATTTATT-TGTCA--CGGACTATAATTAT-GAACCTA--ACAAG---CTGATCAT-CACAGATCCTGTGGCGAGAGAAA-CTTCTAACCGATG---CAGT-TCACA-GGTTCTGTAGTTTACAAGTTTC-C--CGAGAATTTTGTTGCATGCCTTGGACACCTACTA-CGTGGAGTCATTCAACAATG-TTCTAAACATGTTTCCACAACAAACGCACGCAGTTAGGAGACG-A--TCCTACAACATGAGGACGGGCTTAG--CTG--TATGCCATTGGAATGAGAA---CATCGA-CAG--GCTGTCTACCAGAATGTAACAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATCCT-TGGACAGA---GAACATTTCAGTACC-GTGAGGAT---ATCT----GGCAACAT--TTTA--TCCAAGCTTT-GACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTATTTAAAAAAAA---T-------GAGGTTCTACACTGAGGAGGctgtggtttgt
gi|20 : ACAGACAACAAAAG-TG-ATTCGT-CTGG-CAGA-CATAT-GGAATAAAACAGGAAATAATGCTCAA-CTGTGTGATTCGG
gi|21 : acaaaaaattttggacagtgccatGCAGCGATTCAAGC-TTTATTT-GTTTATT-CGATTGAGACAT-ATA----G-------AGTTCTG-AAAGGCAA-GA-A---ATT---C-ACGTAGa
gi|22 : CT----GGCAACAT--TTTA--TCCAAGTTTT-GACTGG-GTGA-CACTATCGAAACTTGTTTC-AATGCTATAAG------GTAGATACATA-CCTTATTATG-ATAACAAAATtatattatataaatacagtatcacaa
gi|23 : A--ATGGTTGCCA-AATCC-----TGA----TG-GA------CAGTCTT-----------------TT-T-GGC--A---GTG-AT-------
gi|24 : TC-ATCAATATATTGCCCAGATTGTCTCCGTCAGCC---ATGT-GTTCTCG-CAAAGA-AGAACAGACAGTCTT----G-----TTTGC-CTGtgtatgggaaaaaaaatataccgtagttatgtaagaaggctatagtctgtaa
gi|25 : AAAA-----ATCCAT-ATGG-TAGA-CATAC-GGAAGTAAATGGGAAATAATGC-----CTGTGTAATTTGTCAGCTCAGAGA--ATttaaaacagaa
gi|26 : acgctgtCAACAAAAG-TG-ATTCGT-CTGG-CAGA-CATAT-GGAATAAAACAGGAAATAATGCTCAA-CTGTGTGATTCGG
gi|27 : aAAGAGAATACTGAATTAGCGGCGATTCAAGC-TTTATTT-GCTTATGCTGATTAGGACAT-
gi|28 : ttccgCAGACTGCAACTAC-GAAACAA--GCAAT---TTCATCAT-CACAGATCCTGTGGCGGA-GAAA-CTTggaa
gi|29 : aCGA-CAG--GCTGTCTACCAGAATGTAACAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATC
gi|3 : GACATGCGACAAAAG-C----------TGG-CAGA-CATAC-TGAACAAAACGGGAAATAATGCCCAA-CTGTGTTATTCAGCAGGTCAGGGA--ATGGATGCCA-AATGC-----CG-----CG-GAGGAGAACAGCCTT---ACATGGG-ACAA--TG-TCGGCCAA---GTGGAT-------AA--AATTGTAG--------CTTA---GT-AGTATATAAGCACA-AAAA-ATAATAATACAAACA------A-ATGGTT-TCCAAGCAGGAAGGCCCTCCTAGTG-CTA----CTG-AAACATTGTGTTTATT--AGTGAATGAATTTTACAGTAGAGTGTTTTAAA--TTACTGTGTCA-TCGG-CT-TGATTATAGAACCTATAGCAAGTCTCTGATCATTCACAGATCCTCTGCTG----AAATCTTCTAACCGACTGGACAGTATCACGCAGTTC-G-AGTTT-C---TTTCGCATC-AGCTTTTTGTGACAGGCCTTGGACACCTACTAGCGTGGAGTGCTT-CACAATGCTTCTAA-CATGTTTCAA--GCAAA-GCACGCAGTTAGGAGATAGAGATTCTA---------AGC---CTTAGGGCTGC-TATGCCGTTAGAAT-AGAATAGCGTCGAACAGTGGCAGTCTCGCGGCATGTACGCATACGCGGCGAC--CGGC--GAAACGC-AGAAAATCCTCTGAACCAG---GAGCATTTCAG-ACCTGTGAGGAT---ACTTCATGGGCAACAT--TTTA--TCCAAGCTTTTGACTGA-GTGA-CACTATTGAAACTTGTATC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-TTTAAAAAAA---T-------GAAGTTCTACACTGAGGAGGCCTCCACGTGGCTAGAAGTGGTAC
gi|4 : AA-----AATTAACTGCGATTCAATC-TTTAATT-ATTTATTGCAATTATGAT----TG----G-------CGTCCTG-AAAGAGAA-TG-T---GTT---C-CTGTAATGACTACACCAGCGTCCC-ACCTAATTTACGTA--TT--CATCCTCAACCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCAGCC---ATGCGGTTCTT--CA-AGA-ACAACAGG----CTT----G-------TGC-C--ATAAACCAAAA
gi|4 : ga-AATGGGCATAAAATCAAAG-CA-AATTGT-GTGG-CAGA-CATAC-G-AATAAAATGGGAATTA----TCAA-----GTTA-------------GGA--GTGGTTCCCCCAATCCTTGCACGAGGCATGTGT------CAGTGTTTGTACATGGATATAAAGTG-T-AGT--ATAGATGTAT-------AAGGA-CCATAGTCGTTAACCTTAAATGC--GTA---AAATGAA-AAGAAA-------------A------A-ATTATTCTGCAA-CAGAGAGGCC-T-CACGTCGCTAGAA-GTGGAGATATTGA-TTTGCT-GAGTGAAT--AATTTAT--CAG-AT--TTTTAAATGTATT-TTTCATTCATATTGTAATggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgagccatgcaaatgggcataaaatcaaagcaaattgtgtggcagacatacgaataaaatgggaattatcaagttaggagtggttcccccaatccttgcacgaggcatgtgtcagtgtttgtacatggatataaagtgtagtatagatgtataaggaccatagtcgttaaccttaaatgcgtaaaatgaaaagaaaaaattattctgcaacagagaggcctcacgtcgctagaagtggagatattgatttgctgagtgaataatttatcagatttttaaatgtatttttcattcatattgtaatggctaa
gi|5 : gaaaaattaactgcgattcaatctttaattatttattgcaattatgattggcgtcctgaaagagaatgtgttcctgtaatgactacaccagcgtcccacctaatttacgtattcatcctcaaccatcatcgacagaatgccccgattgcctttgtcagccatgcggttcttcaagaacaacaggcttgtgccataaaccaaaaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgagccatgcaAGCAGCGATTCCAGC-TTTATTT-GCTCATTACGATTGAGACAT-AAG----GACCCTATAGTCCTG-AAATACAA-GA-A---ATT---C-ACATAGTT-CTACATGAAATT--CTA-GTAACAACCTCAGTTCCGCGTCTTCCATCATTGATCGATAGAATTCCTGAATTGTCTCCGTCAGAC---ATGC-AATCTTGTCAGGGACACAACAG----TTTTTGGAG-----GTAGCGCCGAT----TAAAAAGAACAggctaa
gi|5 : GACAAATG-CGGATTCGC-CTGGGCAAAACCTACTGG--TAGAATGAGAATTAATGCCCAA-TTGTGCGATTCATCGGATCAGGGA--ATGGTTGCCA-AATTC-----CGA----TG-GA------CAGTCTT---ACATGGG---A---TA-T-GGC--A---GTG-AT-------caaacaggcatcccgcaaaggagtctttttcagaaaaatcttcacgaagaaattgaacatgttagcctgtttaatgagaagctagtaccttagcagaaatttaaaaagacccatacaaataacatacatgtactgtaggacaaatgcggattcgcctgggcaaaacctactggtagaatgagaattaatgcccaattgtgcgattcatcggatcagggaatggttgccaaattccgatggacagtcttacatgggatatggcagtgattgtata
gi|6 : agcagcgattccagctttatttgctcattacgattgagacataaggaccctatagtcctgaaatacaagaaattcacatagttctacatgaaattctagtaacaacctcagttccgcgtcttccatcattgatcgatagaattcctgaattgtctccgtcagacatgcaatcttgtcagggacacaacagtttttggaggtagcgccgattaaaaagaacacaaacaggcatcccgcaaaggagtctttttcagaaaaatcttcacgaagaaattgaacatgttagcctgtttaatgagaagctagtaccttagcagaaatttaaaaagacccatacaaataacatacatgtactgtagAAGAGAA-----A-CTAGCGGCGATTCAAGC-TTTATTC-GCTTACAACCATTGGGAT----TG----G-------AATCCCG-AAAGA-------A---GTT---C-CCGTAGCAACGACACCAGCTTCCCCACCTAACATCCATA--TC--CATCCTCAACCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTGGC-CTGATGGCCCTAAAtgtata
gi|6 : atccg-AATGGACATGCAACAAAAG-CA-ATTCAT-CTGG-CAGA-CATAC-GGAACAAAACGGGAAATAATGCCCAA-CTGTGTTATTCGGCAGCTCAGGGA--ATGGTTGCCA-AATCC-----CGA----GG-GA------CAGCCTT---ACTTGAG-ATATT-TG-T-GGC--A---Gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccagagccatacaaatggacatgcaacaaaagcaattcatctggcagacatacggaacaaaacgggaaataatgcccaactgtgttattcggcagctcagggaatggttgccaaatcccgagggacagccttacttgagatatttgtggcag
gi|8 : atccgaagagaaactagcggcgattcaagctttattcgcttacaaccattgggattggaatcccgaaagaagttcccgtagcaacgacaccagcttccccacctaacatccatatccatcctcaaccatcatcgacagaatgccccgattgcctttgtcagccatgcgttcttgcagagaacaacagacaatcttggtggcctgatggccctaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccagagccataca-AATTGACAT-----AGAAGATA-ATTCGT-ATAG-CAGA-CCTAC-GGCATTAAATAAGAAATAATGCCTGCTCTGTGCGATTCATCGGATCAGGGA--ATGGTTGCCA-AATCA-----CGA----TG-GG------CAGTCTT-----------ACA---TG-T-GGC--G---ATG-ATTCTATAAAA--A-CTGTAC--------CTTA---CC-GAT------GTAAACAAG
gi|9 : gacaaacgctaggtactttgatagaaaattcagagccatacaAAGAGAA-----A-CTAGCGGCGATTCAAGC-TTTATTC-GCTTACAACGATTGGGAT----TG----G-------AATCCTG-AAAGAGAA-GA-AGTTGTT---C-CCGTAGCAACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCAACAGAATGCCCTGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTGGT-CTGATGGACCGAAActgtatagtctgtaagcttcagt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TTGAAACATTCAGAGTCATAAAAGACTAGAAATTCACGTAGTTTCCCAGCTCTGCGTCTACCATTATCGATAAAAATCAGGAATTGTCTGTAAAGCATGAAATCTCGCACGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAACGGTATCTCACAGAGGAGAGCCTTTTTAAAAAAAATCACCAGGAAGAGAATTGAACAATGTTTTTCCCTCGAATAGCCTGAATTGACGAAAGCT
Unaligned ( gi|18 ): GGACAGTCTAACACGGAATAAAGTGTATATGAAAATAAACTTAGCTTAGTACTTTAAAAAAAACTATAGTCTATAAACTTAGGTTGTAAGTAAGAGATCAT
Unaligned ( gi|30 ): CCTGTGTAATTTGTCAGCTCAGAGAATA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222 222222222222222222 111 11111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 11111 1111111 3333333 11111111 222222 6666666666666666666666 1 1 1111 1 11 11 11 11 1 22 1 11 111 1 111 1 222 1 11 1 22222 1 1 1 1 222 66666666666666666 11 22 222 1 11 11 11 11 1 111 1 111 1111 11 11 222222 1 55555555555
lowQualScore : 3333333 6 44 1 0 777777777777777777 3 3 7 3 666 666 3 333 0 2 4 1 999999 0 5 3 888 5 5 0 5 1 4 44444444444 1 5 6 1 1 1 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 0000 4 4 4 4 2 1 4 3 1 4 1 44 3 11111 7777 3 999999 555 1 8888888 3 6 44 555 7 5555555 66 4 1 66666666 777 4 999999 4 5 4444444444444444444444 3 2 0 0 0 2 0 2 7777 2 0 22 33 22 3 33 3 0 55 0 3 0 33 777 0 666 0 333 3 44 3 7 7 7 77777 6 1 88 3 3 6 3 7 3 7 6 333 77777777777777777 88 55 0 6 333 0 33 1 1 1 8 11 11 11 8 0 777 3 0 777 7777 11 11 8 8 8 8 333333 8 6 8 3 77777777777 1
lowQualScore : ....... . .. . . .................. . . . . ... ... . ... . . . . ...... . . . ... . . . . . . ........... . . . . . . ........................................................................................................ . .... . . . . . . . . . . . .. . ..... .... . ...... ... . ....... . . .. ... . ....... .. . . ........ ... . ...... . . ...................... . . . . . . . . .... . . .. .. .. . .. . . .. . . . .. ... . ... . ... . .. . . . . ..... . . .. . . . . . . . . ... ................. .. .. . . ... . .. . . . . .. .. .. . . ... . . ... .... .. .. . . . . ...... . . . . ........... .
lowQualScore : 2222222 7 88 0 1 444444444444444444 6 6 3 6 444 444 6 000 7 4 3 6 666666 4 0 4 888 0 0 2 0 4 0 55555555555 0 0 2 7 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 1111 0 0 0 0 8 1 8 6 8 6 6 22 3 77777 1111 3 666666 888 2 8888888 3 7 66 888 3 5555555 11 4 9 11111111 888 4 333333 4 7 8888888888888888888888 2 5 8 0 0 5 2 5 0000 5 0 55 88 55 2 88 2 0 55 8 2 0 88 555 0 888 0 333 3 00 3 3 3 3 00000 7 0 33 3 3 7 3 3 3 3 7 333 33333333333333333 33 33 7 7 333 0 88 0 0 0 0 00 00 00 0 0 555 2 0 555 0000 00 00 0 0 0 0 000000 0 0 0 3 77777777777 0
consensus : AAGAGAA-----AACTAGCGGCGATTCAAGC-TTTATTC-GCTTATNACGATTGGGACAT-ATG----G-------AGTCCTG-AAAGACAA-GA-A---GTT---C-CCGTAGCGACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTNGC-CCGATGGACCNAAAANAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AATGGACATGCGACAAAAG-CG-ATTCGT-CTGG-CAGA-CATAC-GGAATAAAACGGGAAATAATGCCCAA-CTGTGTGATTCGGCAGATCAGGGA--ATGGTTGCCA-AATCC-----CGA----TG-GA------CAGTCTT---ACATGGG-ACA---TG-T-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GC-AGTA---AAGTAAA-AAGA-A-------------A------A-ATGGTTCTACAA-CAGGAAGGCC-TCCACGTGGCTAGAA-CTGGAAACATTGT-TTTATT-GAGTGAAT--ATTTTAC-GTAGAAT--TTTAAAATTTATT-TGTCA-TCGGACTGTAATTAC-GAACCTA--GCAAG---CTGATCAT-CACAGATCCTGTGGCGGG-GAAA-CTTCTAACCGATT---CAGT-TCACG-GGTTC-GTAGTTTACAAGTTTCGC--CGAGNATTTTGTNGCATGCCTTGGACACCTACTA-CGTGGAGTCATT-AACAATG-TTCTAAACATGTTTC-ACGACAAACGCACGCAGTTAGGAGAC---GATTCTACAACA---GGGC---CTTAG--CTGC-TATGCCGTTGGAATGAGAA---CGTCGA-CAG--GCNGTCTACCGGNATGTANCAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATCCT-TGGACAGA---GAACATTTCAGTACC-GTGAGGAT---ATCT----GGCAACAT--TTTA--TCCAAGCTTT-GACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-TTAAAAAAAA---T-------GAGGTTCTACACTGAGGAGGCCTCCACGTGGCTAGAANTGGTAC
Reference ( family-3727 ) : AAGAGAA-----AACTAGCGGCGATTCAAGC-TTTATTC-GCTTATNACGATTGGGACAT-ATG----G-------AGTCCTG-AAAGACAA-GA-A---GTT---C-CCGTAGCGACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTNGC-CCGATGGACCNAAAANAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AATGGACATGCGACAAAAG-CG-ATTCGT-CTGG-CAGA-CATAC-GGAATAAAACGGGAAATAATGCCCAA-CTGTGTGATTCGGCAGATCAGGGA--ATGGTTGCCA-AATCC-----CGA----TG-GA------CAGTCTT---ACATGGG-ACA---TG-T-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GC-AGTA---AAGTAAA-AAGA-A-------------A------A-ATGGTTCTACAA-CAGGAAGGCC-TCCACGTGGCTAGAA-CTGGAAACATTGT-TTTATT-GAGTGAAT--ATTTTAC-GTAGAAT--TTTAAAATTTATT-TGTCA-TCGGACTGTAATTAC-GAACCTA--GCAAG---CTGATCAT-CACAGATCCTGTGGCGGG-GAAA-CTTCTAACCGATT---CAGT-TCACG-GGTTC-GTAGTTTACAAGTTTCGC--CGAGNATTTTGTNGCATGCCTTGGACACCTACTA-CGTGGAGTCATT-AACAATG-TTCTAAACATGTTTC-ACGACAAACGCACGCAGTTAGGAGAC---GATTCTACAACA---GGGC---CTTAG--CTGC-TATGCCGTTGGAATGAGAA---CGTCGA-CAG--GCNGTCTACCGGNATGTANCAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATCCT-TGGACAGA---GAACATTTCAGTACC-GTGAGGAT---ATCT----GGCAACAT--TTTA--TCCAAGCTTT-GACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-TTAAAAAAAA---T-------GAGGTTCTACACTGAGGAGGCCTCCACGTGGCTAGAANTGGTAC
gi|1 : AAGAGAA-----AACTAGCGGCGATTCAAGC-TTTATTC-GCTTACAATGATTGGGAT----TA----G-------AATCCTG-AAAGAGAA-GT-T---GTT---C-CCGTAGGAACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCGACAGAATGCCCCGATTTCCTTTGTCAGCCGCCATGC-GTTCTTG-CAGAGA-ACAACAGACATTCTT----G-----ATGGC-CTGATGGACCTAAAACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AATGGACATGCGACAAAAG-CT-ATTCAT-CTGG-CAGA-CTTAC-GGAACAAAACGGGAAACAATGCCCAA-CTGTGTTATTCGGCAGGTCAGGGA--ATGGTTGCCA-AATCC-----CGA----GG-GA------CAGCCTT---ACATGGG-ACA---TG-T-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GT-AGTA---AAGCAAA-AAAA-A-------------A------A-A-GGTTCTACAA-CAGGAAGGCC-TCCACGTGGCTAGTA-CTGGAAACATTGT-TTTATT-GAGTGAAT--ATTTTAT-GTAGAAT--TTTAAAATTTATT-TGTCA--CGGATTGTAATTAC-GAACCTA--GCAAG---CTGAACAA-CACAGATCCTGTGGCGGG-GAAA-CTTCTAACTGATT---CAGT-TCACA-GGTTC-GTAGTTTACAAGTTT-AC--CGAGGATTTTG-AGCATACCGTGTATACCTACTA-CTAGGAGTCATT-AA-AATG-TTCTAAACATGTTTC-ACGACAAACGCACGCAGTTAGGAGAC---AATTC--CAACA---G------CTTAG--CTATATATGCCATTGGAATGAGAA---CGTCGA-CAG--GCAGTCTACCGGCATGTACCAATAC-C--CAAT--CGGG--AAAACCA-AGAAAATCCT-TGGACAAA---GAACATTTCAGTACC-GTGAGGAA---GTCT----GGCGACAT--TTTA--TCCAAGCTTT-GACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-TAAAAAAAAAATTTAAAAAAAGAGGTTCTACACTGAGGAGGCCTCCACATGGCTAGAACTGGTAC
gi|10 : -TTTATTTTGCTTATTACGAATGAAACATTAAG----G-------TATC----AAAGACTA-GACA---ATT---C-CCGTAG
gi|11 : ttaataacgattttcgaaCAATAC-C---GACGTCGGGGAAAAACCAGAAAAAATCCT-TGGACAGAAGAGAACATTTCAGTAGC-GTGAGGATTTAATCT-----GCAACATTCTTTATCTCCAGTTTTT-GACTAAGGTGACCAATGTGGAAACTTGTTTCAAATGCATTTAGGTAAGTGTAGATACATAGCCT-ATTATGAATAA-AAAGTGTtttcccagtctgcgtctaccattatcgataaaaataggaattgtctgtaagcacatatcgcccaggaagtcttggttgctaattaaacggtaatctcaaagaggagagctttttaaaaaaatcacaggagaattgacccatgt
gi|12 : gtAGCAGCGATTCA------TA-----CTT-TGACGATTGAGACAA-ATA----G-------AGTCATG-TAGGACAA-GA-A---ATT---C-ACATAG-------------TTCCCCA----GCGTC--TA---------------CCATC-ATCGATATAATTCTCGAATTGTCTCTGTCAGAC---ATGC-AATATTG-CAAGGA-ACATTA-ATAGTCTT----GACCGTGTAGC-TCGATAAACC
gi|13 : GTGTGATTCA-CAGACCAGGGAGAATAATTGCCA-AATTTG----CGA----TG-GA------CAGTCTA---ACAAGGGAATA---TA-TAGGG--A---AT--AT-------AA--A-CTTTAG--------CTTA---GC-AATA------TAAA-AAGA-a
gi|14 : cCGATTCAAGCCTTTATTT-GCTTATTACGATTGAGACAT-ATATATTG-------AGTCCTGAAAAGACAATGA-A---ATT---CACTGTAGctacagtctgtaaacttacgttgtaagtaacagatcagtagtagcggtgatcgagc
gi|15 : caaCGATTCAAGCCTTTATTT-GCTTATTACGATTGAGACAT-ATATA--G-------AGTCCTG-AAAGACAA-GA-A---ATT---C-ACGTAGtttctaattctagtaaacaacccaagtcacgtcctccattcatcga
gi|16 : CAGATCAGGGA--ATGGTTACC-------------GA----TG-GA------CAATCTT---ACATGGG-ACA---TG-T---C--A---GTG-ATGGTATAAAA--A-CTAAAC--------CTTA---CC-AATA------TAAA-AAGA-A-------------ttcttaattctagtaacaacccaagttccacgttcctccattcat
gi|17 : catA--ATGGTTGCTA-AATTC-----AAA----TG-GG------CGTTCTT---ACATGGG-ATATG-TG-T-GGC--A---GTG-ATTGAATAAAA--A-GTGTAC--------CTTA---GC-AAT------GTAAA-AAGtgtacactctgtaaactttcag
gi|19 : -CTTTGTGATTCTCCAGACCAGGAA--ATAATTGCCA-AATCG-----CGA----TA-G--------AGTCTA---ACA-AGG-A-A---T---------------------------A--A-CT-TAG--------CTTA---GC-AAT------GTAAA-AAGA-gttgaagtctgtaaactttt
gi|2 : aatgtAAGAGAA-----A-CTAGCGGCGATTCAAGC-TTTATTC-GCTTACAACGATTGGGAT----TG----G-------AATCCTG-AAAGAGAAAGA-A---GTTGTTC-CCGTAGCAACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCAACAGAATGCCCTGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTCGT-CTGATGGACCCGAAAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGGACATGCGACAAAAG-CG-ATTCATTCTGG-CAGA-CATAC-GGAA--AAACGGGAA-TAATGC--AA-CTGTGTTATTCGGCAGGTCAGGGA--ATGGTTGCCA-AATCC-----CGA----GG-GA--------GCCTT---ACATGGG-ACA---TGGT-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GTTAGTA---AAGCAAA-AAAA-A-------------ATAATTAATATGGTTCTACAA-CAGGAAGGCC-TCCATGTGGCTAAAAACTGGAAACATTGT-TTTATTTGAGTGAAT--ATTTTAC-GTAGAAT--TTTAAAATTTATT-TGTCA--CGGACTATAATTAT-GAACCTA--ACAAG---CTGATCAT-CACAGATCCTGTGGCGAGAGAAA-CTTCTAACCGATG---CAGT-TCACA-GGTTCTGTAGTTTACAAGTTTC-C--CGAGAATTTTGTTGCATGCCTTGGACACCTACTA-CGTGGAGTCATTCAACAATG-TTCTAAACATGTTTCCACAACAAACGCACGCAGTTAGGAGAC---GATCCTACAACATGAGGACGGGCTTAG--CTG--TATGCCATTGGAATGAGAA---CATCGA-CAG--GCTGTCTACCAGAATGTAACAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATCCT-TGGACAGA---GAACATTTCAGTACC-GTGAGGAT---ATCT----GGCAACAT--TTTA--TCCAAGCTTT-GACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTATTTAAAAAAAA---T-------GAGGTTCTACACTGAGGAGGctgtggtttgt
gi|20 : ACAGACAACAAAAG-TG-ATTCGT-CTGG-CAGA-CATAT-GGAATAAAACAGGAAATAATGCTCAA-CTGTGTGATTCGG
gi|21 : acaaaaaattttggacagtgccatGCAGCGATTCAAGC-TTTATTT-GTTTATT-CGATTGAGACAT-ATA----G-------AGTTCTG-AAAGGCAA-GA-A---ATT---C-ACGTAGa
gi|22 : CT----GGCAACAT--TTTA--TCCAAGTTTT-GACTGG-GTGA-CACTATCGAAACTTGTTTC-AATGCTATAAG------GTAGATACATA-CCTTATTATG-ATAACAAAATtatattatataaatacagtatcacaa
gi|23 : A--ATGGTTGCCA-AATCC-----TGA----TG-GA------CAGTCTT-----------------TT-T-GGC--A---GTG-AT-------
gi|24 : TC-ATCAATATATTGCCCAGATTGTCTCCGTCAGCC---ATGT-GTTCTCG-CAAAGA-AGAACAGACAGTCTT----G-----TTTGC-CTGtgtatgggaaaaaaaatataccgtagttatgtaagaaggctatagtctgtaa
gi|25 : AAAA-----ATCCAT-ATGG-TAGA-CATAC-GGAAGTAAATGGGAAATAATGC-----CTGTGTAATTTGTCAGCTCAGAGA--ATttaaaacagaa
gi|26 : acgctgtCAACAAAAG-TG-ATTCGT-CTGG-CAGA-CATAT-GGAATAAAACAGGAAATAATGCTCAA-CTGTGTGATTCGG
gi|27 : aAAGAGAATACTGAATTAGCGGCGATTCAAGC-TTTATTT-GCTTATGCTGATTAGGACAT-
gi|28 : ttccgCAGACTGCAACTAC-GAAACAA--GCAAT---TTCATCAT-CACAGATCCTGTGGCGGA-GAAA-CTTggaa
gi|29 : aCGA-CAG--GCTGTCTACCAGAATGTAACAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATC
gi|3 : GACATGCGACAAAAG-C----------TGG-CAGA-CATAC-TGAACAAAACGGGAAATAATGCCCAA-CTGTGTTATTCAGCAGGTCAGGGA--ATGGATGCCA-AATGC-----CG-----CG-GAGGAGAACAGCCTT---ACATGGG-ACAA--TG-TCGGCCAA---GTGGAT-------AA--AATTGTAG--------CTTA---GT-AGTATATAAGCACA-AAAA-ATAATAATACAAACA------A-ATGGTT-TCCAAGCAGGAAGGCCCTCCTAGTG-CTA----CTG-AAACATTGTGTTTATT--AGTGAATGAATTTTACAGTAGAGTGTTTTAAA--TTACTGTGTCA-TCGG-CT-TGATTATAGAACCTATAGCAAGTCTCTGATCATTCACAGATCCTCTGCTG----AAATCTTCTAACCGACTGGACAGTATCACGCAGTTC-G-AGTTT-C---TTTCGCATC-AGCTTTTTGTGACAGGCCTTGGACACCTACTAGCGTGGAGTGCTT-CACAATGCTTCTAA-CATGTTTC-AAG-CAAA-GCACGCAGTTAGGAGATAGAGATTCTA---------AGC---CTTAGGGCTGC-TATGCCGTTAGAAT-AGAATAGCGTCGAACAGTGGCAGTCTCGCGGCATGTACGCATACGCGGCGAC--CGGC--GAAACGC-AGAAAATCCTCTGAACCAG---GAGCATTTCAG-ACCTGTGAGGAT---ACTTCATGGGCAACAT--TTTA--TCCAAGCTTTTGACTGA-GTGA-CACTATTGAAACTTGTATC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-TTTAAAAAAA---T-------GAAGTTCTACACTGAGGAGGCCTCCACGTGGCTAGAAGTGGTAC
gi|4 : AA-----AATTAACTGCGATTCAATC-TTTAATT-ATTTATTGCAATTATGAT----TG----G-------CGTCCTG-AAAGAGAA-TG-T---GTT---C-CTGTAATGACTACACCAGCGTCCC-ACCTAATTTACGTA--TT--CATCCTCAACCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCAGCC---ATGCGGTTCTT--CA-AGA-ACAACAGG----CTT----G-------TGC-C--ATAAACCAAAA
gi|4 : ga-AATGGGCATAAAATCAAAG-CA-AATTGT-GTGG-CAGA-CATAC-G-AATAAAATGGGAATTA----TCAA-----GTTA-------------GGA--GTGGTTCCCCCAATCCTTGCACGAGGCATGTGT------CAGTGTTTGTACATGGATATAAAGTG-T-AGT--ATAGATGTAT-------AAGGA-CCATAGTCGTTAACCTTAAATGC--GTA---AAATGAA-AAGAAA-------------A------A-ATTATTCTGCAA-CAGAGAGGCC-T-CACGTCGCTAGAA-GTGGAGATATTGA-TTTGCT-GAGTGAAT--AATTTAT--CAG-AT--TTTTAAATGTATT-TTTCATTCATATTGTAATggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgagccatgcaaatgggcataaaatcaaagcaaattgtgtggcagacatacgaataaaatgggaattatcaagttaggagtggttcccccaatccttgcacgaggcatgtgtcagtgtttgtacatggatataaagtgtagtatagatgtataaggaccatagtcgttaaccttaaatgcgtaaaatgaaaagaaaaaattattctgcaacagagaggcctcacgtcgctagaagtggagatattgatttgctgagtgaataatttatcagatttttaaatgtatttttcattcatattgtaatggctaa
gi|5 : gaaaaattaactgcgattcaatctttaattatttattgcaattatgattggcgtcctgaaagagaatgtgttcctgtaatgactacaccagcgtcccacctaatttacgtattcatcctcaaccatcatcgacagaatgccccgattgcctttgtcagccatgcggttcttcaagaacaacaggcttgtgccataaaccaaaaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgagccatgcaAGCAGCGATTCCAGC-TTTATTT-GCTCATTACGATTGAGACAT-AAG----GACCCTATAGTCCTG-AAATACAA-GA-A---ATT---C-ACATAGTT-CTACATGAAATT--CTA-GTAACAACCTCAGTTCCGCGTCTTCCATCATTGATCGATAGAATTCCTGAATTGTCTCCGTCAGAC---ATGC-AATCTTGTCAGGGACACAACAG----TTTTTGGAG-----GTAGCGCCGAT----TAAAAAGAACAggctaa
gi|5 : GACAAATG-CGGATTCGC-CTGGGCAAAACCTACTGG--TAGAATGAGAATTAATGCCCAA-TTGTGCGATTCATCGGATCAGGGA--ATGGTTGCCA-AATTC-----CGA----TG-GA------CAGTCTT---ACATGGG---A---TA-T-GGC--A---GTG-AT-------caaacaggcatcccgcaaaggagtctttttcagaaaaatcttcacgaagaaattgaacatgttagcctgtttaatgagaagctagtaccttagcagaaatttaaaaagacccatacaaataacatacatgtactgtaggacaaatgcggattcgcctgggcaaaacctactggtagaatgagaattaatgcccaattgtgcgattcatcggatcagggaatggttgccaaattccgatggacagtcttacatgggatatggcagtgattgtata
gi|6 : agcagcgattccagctttatttgctcattacgattgagacataaggaccctatagtcctgaaatacaagaaattcacatagttctacatgaaattctagtaacaacctcagttccgcgtcttccatcattgatcgatagaattcctgaattgtctccgtcagacatgcaatcttgtcagggacacaacagtttttggaggtagcgccgattaaaaagaacacaaacaggcatcccgcaaaggagtctttttcagaaaaatcttcacgaagaaattgaacatgttagcctgtttaatgagaagctagtaccttagcagaaatttaaaaagacccatacaaataacatacatgtactgtagAAGAGAA-----A-CTAGCGGCGATTCAAGC-TTTATTC-GCTTACAACCATTGGGAT----TG----G-------AATCCCG-AAAGA-------A---GTT---C-CCGTAGCAACGACACCAGCTTCCCCACCTAACATCCATA--TC--CATCCTCAACCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTGGC-CTGATGGCCCTAAAtgtata
gi|6 : atccg-AATGGACATGCAACAAAAG-CA-ATTCAT-CTGG-CAGA-CATAC-GGAACAAAACGGGAAATAATGCCCAA-CTGTGTTATTCGGCAGCTCAGGGA--ATGGTTGCCA-AATCC-----CGA----GG-GA------CAGCCTT---ACTTGAG-ATATT-TG-T-GGC--A---Gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccagagccatacaaatggacatgcaacaaaagcaattcatctggcagacatacggaacaaaacgggaaataatgcccaactgtgttattcggcagctcagggaatggttgccaaatcccgagggacagccttacttgagatatttgtggcag
gi|8 : atccgaagagaaactagcggcgattcaagctttattcgcttacaaccattgggattggaatcccgaaagaagttcccgtagcaacgacaccagcttccccacctaacatccatatccatcctcaaccatcatcgacagaatgccccgattgcctttgtcagccatgcgttcttgcagagaacaacagacaatcttggtggcctgatggccctaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccagagccataca-AATTGACAT-----AGAAGATA-ATTCGT-ATAG-CAGA-CCTAC-GGCATTAAATAAGAAATAATGCCTGCTCTGTGCGATTCATCGGATCAGGGA--ATGGTTGCCA-AATCA-----CGA----TG-GG------CAGTCTT-----------ACA---TG-T-GGC--G---ATG-ATTCTATAAAA--A-CTGTAC--------CTTA---CC-GAT------GTAAACAAG
gi|9 : gacaaacgctaggtactttgatagaaaattcagagccatacaAAGAGAA-----A-CTAGCGGCGATTCAAGC-TTTATTC-GCTTACAACGATTGGGAT----TG----G-------AATCCTG-AAAGAGAA-GA-AGTTGTT---C-CCGTAGCAACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCAACAGAATGCCCTGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTGGT-CTGATGGACCGAAActgtatagtctgtaagcttcagt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TTGAAACATTCAGAGTCATAAAAGACTAGAAATTCACGTAGTTTCCCAGCTCTGCGTCTACCATTATCGATAAAAATCAGGAATTGTCTGTAAAGCATGAAATCTCGCACGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAACGGTATCTCACAGAGGAGAGCCTTTTTAAAAAAAATCACCAGGAAGAGAATTGAACAATGTTTTTCCCTCGAATAGCCTGAATTGACGAAAGCT
Unaligned ( gi|18 ): GGACAGTCTAACACGGAATAAAGTGTATATGAAAATAAACTTAGCTTAGTACTTTAAAAAAAACTATAGTCTATAAACTTAGGTTGTAAGTAAGAGATCAT
Unaligned ( gi|30 ): CCTGTGTAATTTGTCAGCTCAGAGAATA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222 222222222222222222 111 11111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 11111 1111111 3333333 11111111 222222 6666666666666666666666 1 1 1111 1 11 11 11 11 1 22 1 11 111 1 111 1 222 1 11 1 22222 1 1 1 1 222 66666666666666666 11 22 222 1 11 11 11 11 1 111 1 111 1111 11 11 222222 1 55555555555
lowQualScore : 3333333 6 44 1 0 777777777777777777 3 3 7 3 666 666 3 333 0 2 4 1 999999 0 5 3 888 5 5 0 5 1 4 44444444444 1 5 6 1 1 1 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 0000 4 4 4 4 2 1 4 3 1 4 1 44 3 11111 7777 3 999999 555 1 8888888 3 6 44 555 7 5555555 66 4 1 66666666 777 4 999999 4 5 4444444444444444444444 3 2 0 0 0 2 0 2 7777 2 0 22 33 22 3 33 3 0 55 0 3 0 33 777 0 666 0 333 3 44 3 7 7 7 77777 6 1 88 3 3 6 3 7 3 7 6 333 77777777777777777 88 55 0 6 333 0 33 1 1 1 8 11 11 11 8 0 777 3 0 777 7777 11 11 8 8 8 8 333333 8 6 8 3 77777777777 1
lowQualScore : ....... . .. . . .................. . . . . ... ... . ... . . . . ...... . . . ... . . . . . . ........... . . . . . . ........................................................................................................ . .... . . . . . . . . . . . .. . ..... .... . ...... ... . ....... . . .. ... . ....... .. . . ........ ... . ...... . . ...................... . . . . . . . . .... . . .. .. .. . .. . . .. . . . .. ... . ... . ... . .. . . . . ..... . . .. . . . . . . . . ... ................. .. .. . . ... . .. . . . . .. .. .. . . ... . . ... .... .. .. . . . . ...... . . . . ........... .
lowQualScore : 2222222 7 88 0 1 444444444444444444 6 6 3 6 444 444 6 000 7 4 3 6 666666 4 0 4 888 0 0 2 0 4 0 55555555555 0 0 2 7 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 1111 0 0 0 0 8 1 8 6 8 6 6 22 3 77777 1111 3 666666 888 2 8888888 3 7 66 888 3 5555555 11 4 9 11111111 888 4 333333 4 7 8888888888888888888888 2 5 8 0 0 5 2 5 0000 5 0 55 88 55 2 88 2 0 55 8 2 0 88 555 0 888 0 333 3 00 3 3 3 3 00000 7 0 33 3 3 7 3 3 3 3 7 333 33333333333333333 33 33 7 7 333 0 88 0 0 0 0 00 00 00 0 0 555 2 0 555 0000 00 00 0 0 0 0 000000 0 0 0 3 77777777777 0
consensus : AAGAGAA-----AACTAGCGGCGATTCAAGC-TTTATTC-GCTTATNACGATTGGGACAT-ATG----G-------AGTCCTG-AAAGACAA-GA-A---GTT---C-CCGTAGCGACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTNGC-CCGATGGACCNAAAANAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AATGGACATGCGACAAAAG-CG-ATTCGT-CTGG-CAGA-CATAC-GGAATAAAACGGGAAATAATGCCCAA-CTGTGTGATTCGGCAGATCAGGGA--ATGGTTGCCA-AATCC-----CGA----TG-GA------CAGTCTT---ACATGGG-ACA---TG-T-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GC-AGTA---AAGTAAA-AAGA-A-------------A------A-ATGGTTCTACAA-CAGGAAGGCC-TCCACGTGGCTAGAA-CTGGAAACATTGT-TTTATT-GAGTGAAT--ATTTTAC-GTAGAAT--TTTAAAATTTATT-TGTCA-TCGGACTGTAATTAC-GAACCTA--GCAAG---CTGATCAT-CACAGATCCTGTGGCGGG-GAAA-CTTCTAACCGATT---CAGT-TCACG-GGTTC-GTAGTTTACAAGTTTCGC--CGAGNATTTTGTNGCATGCCTTGGACACCTACTA-CGTGGAGTCATT-AACAATG-TTCTAAACATGTTTC-ACGACAAACGCACGCAGTTAGGAGAC---GATTCTACAACA---GGGC---CTTAG--CTGC-TATGCCGTTGGAATGAGAA---CGTCGA-CAG--GCNGTCTACCGGNATGTANCAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATCCT-TGGACAGA---GAACATTTCAGTACC-GTGAGGAT---ATCT----GGCAACAT--TTTA--TCCAAGCTTT-GACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-TTAAAAAAAA---T-------GAGGTTCTACACTGAGGAGGCCTCCACGTGGCTAGAANTGGTAC
Reference ( family-3727 ) : AAGAGAA-----AACTAGCGGCGATTCAAGC-TTTATTC-GCTTATNACGATTGGGACAT-ATG----G-------AGTCCTG-AAAGACAA-GA-A---GTT---C-CCGTAGCGACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTNGC-CCGATGGACCNAAAANAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AATGGACATGCGACAAAAG-CG-ATTCGT-CTGG-CAGA-CATAC-GGAATAAAACGGGAAATAATGCCCAA-CTGTGTGATTCGGCAGATCAGGGA--ATGGTTGCCA-AATCC-----CGA----TG-GA------CAGTCTT---ACATGGG-ACA---TG-T-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GC-AGTA---AAGTAAA-AAGA-A-------------A------A-ATGGTTCTACAA-CAGGAAGGCC-TCCACGTGGCTAGAA-CTGGAAACATTGT-TTTATT-GAGTGAAT--ATTTTAC-GTAGAAT--TTTAAAATTTATT-TGTCA-TCGGACTGTAATTAC-GAACCTA--GCAAG---CTGATCAT-CACAGATCCTGTGGCGGG-GAAA-CTTCTAACCGATT---CAGT-TCACG-GGTTC-GTAGTTTACAAGTTTCGC--CGAGNATTTTGTNGCATGCCTTGGACACCTACTA-CGTGGAGTCATT-AACAATG-TTCTAAACATGTTTC-ACGACAAACGCACGCAGTTAGGAGAC---GATTCTACAACA---GGGC---CTTAG--CTGC-TATGCCGTTGGAATGAGAA---CGTCGA-CAG--GCNGTCTACCGGNATGTANCAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATCCT-TGGACAGA---GAACATTTCAGTACC-GTGAGGAT---ATCT----GGCAACAT--TTTA--TCCAAGCTTT-GACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-TTAAAAAAAA---T-------GAGGTTCTACACTGAGGAGGCCTCCACGTGGCTAGAANTGGTAC
gi|1 : AAGAGAA-----AACTAGCGGCGATTCAAGC-TTTATTC-GCTTACAATGATTGGGAT----TA----G-------AATCCTG-AAAGAGAA-GT-T---GTT---C-CCGTAGGAACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCGACAGAATGCCCCGATTTCCTTTGTCAGCCGCCATGC-GTTCTTG-CAGAGA-ACAACAGACATTCTT----G-----ATGGC-CTGATGGACCTAAAACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AATGGACATGCGACAAAAG-CT-ATTCAT-CTGG-CAGA-CTTAC-GGAACAAAACGGGAAACAATGCCCAA-CTGTGTTATTCGGCAGGTCAGGGA--ATGGTTGCCA-AATCC-----CGA----GG-GA------CAGCCTT---ACATGGG-ACA---TG-T-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GT-AGTA---AAGCAAA-AAAA-A-------------A------A-A-GGTTCTACAA-CAGGAAGGCC-TCCACGTGGCTAGTA-CTGGAAACATTGT-TTTATT-GAGTGAAT--ATTTTAT-GTAGAAT--TTTAAAATTTATT-TGTCA--CGGATTGTAATTAC-GAACCTA--GCAAG---CTGAACAA-CACAGATCCTGTGGCGGG-GAAA-CTTCTAACTGATT---CAGT-TCACA-GGTTC-GTAGTTTACAAGTTT-AC--CGAGGATTTTG-AGCATACCGTGTATACCTACTA-CTAGGAGTCATT-AA-AATG-TTCTAAACATGTTTC-ACGACAAACGCACGCAGTTAGGAGAC---AATTC--CAACA---G------CTTAG--CTATATATGCCATTGGAATGAGAA---CGTCGA-CAG--GCAGTCTACCGGCATGTACCAATAC-C--CAAT--CGGG--AAAACCA-AGAAAATCCT-TGGACAAA---GAACATTTCAGTACC-GTGAGGAA---GTCT----GGCGACAT--TTTA--TCCAAGCTTT-GACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-TAAAAAAAAAATTTAAAAAAAGAGGTTCTACACTGAGGAGGCCTCCACATGGCTAGAACTGGTAC
gi|10 : -TTTATTTTGCTTATTACGAATGAAACATTAAG----G-------TATC----AAAGACTA-GACA---ATT---C-CCGTAG
gi|11 : ttaataacgattttcgaaCAATAC-C---GACGTCGGGGAAAAACCAGAAAAAATCCT-TGGACAGAAGAGAACATTTCAGTAGC-GTGAGGATTTAATCT-----GCAACATTCTTTATCTCCAGTTTTT-GACTAAGGTGACCAATGTGGAAACTTGTTTCAAATGCATTTAGGTAAGTGTAGATACATAGCCT-ATTATGAATAA-AAAGTGTtttcccagtctgcgtctaccattatcgataaaaataggaattgtctgtaagcacatatcgcccaggaagtcttggttgctaattaaacggtaatctcaaagaggagagctttttaaaaaaatcacaggagaattgacccatgt
gi|12 : gtAGCAGCGATTCA------TA-----CTT-TGACGATTGAGACAA-ATA----G-------AGTCATG-TAGGACAA-GA-A---ATT---C-ACATAG-------------TTCCCCA----GCGTC--TA---------------CCATC-ATCGATATAATTCTCGAATTGTCTCTGTCAGAC---ATGC-AATATTG-CAAGGA-ACATTA-ATAGTCTT----GACCGTGTAGC-TCGATAAACC
gi|13 : GTGTGATTCA-CAGACCAGGGAGAATAATTGCCA-AATTTG----CGA----TG-GA------CAGTCTA---ACAAGGGAATA---TA-TAGGG--A---AT--AT-------AA--A-CTTTAG--------CTTA---GC-AATA------TAAA-AAGA-a
gi|14 : cCGATTCAAGCCTTTATTT-GCTTATTACGATTGAGACAT-ATATATTG-------AGTCCTGAAAAGACAATGA-A---ATT---CACTGTAGctacagtctgtaaacttacgttgtaagtaacagatcagtagtagcggtgatcgagc
gi|15 : caaCGATTCAAGCCTTTATTT-GCTTATTACGATTGAGACAT-ATATA--G-------AGTCCTG-AAAGACAA-GA-A---ATT---C-ACGTAGtttctaattctagtaaacaacccaagtcacgtcctccattcatcga
gi|16 : CAGATCAGGGA--ATGGTTACC-------------GA----TG-GA------CAATCTT---ACATGGG-ACA---TG-T---C--A---GTG-ATGGTATAAAA--A-CTAAAC--------CTTA---CC-AATA------TAAA-AAGA-A-------------ttcttaattctagtaacaacccaagttccacgttcctccattcat
gi|17 : catA--ATGGTTGCTA-AATTC-----AAA----TG-GG------CGTTCTT---ACATGGG-ATATG-TG-T-GGC--A---GTG-ATTGAATAAAA--A-GTGTAC--------CTTA---GC-AAT------GTAAA-AAGtgtacactctgtaaactttcag
gi|19 : -CTTTGTGATTCTCCAGACCAGGAA--ATAATTGCCA-AATCG-----CGA----TA-G--------AGTCTA---ACA-AGG-A-A---T---------------------------A--A-CT-TAG--------CTTA---GC-AAT------GTAAA-AAGA-gttgaagtctgtaaactttt
gi|2 : aatgtAAGAGAA-----A-CTAGCGGCGATTCAAGC-TTTATTC-GCTTACAACGATTGGGAT----TG----G-------AATCCTG-AAAGAGAAAGA-A---GTTGTTC-CCGTAGCAACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCAACAGAATGCCCTGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTCGT-CTGATGGACCCGAAAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGGACATGCGACAAAAG-CG-ATTCATTCTGG-CAGA-CATAC-GGAA--AAACGGGAA-TAATGC--AA-CTGTGTTATTCGGCAGGTCAGGGA--ATGGTTGCCA-AATCC-----CGA----GG-GA--------GCCTT---ACATGGG-ACA---TGGT-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GTTAGTA---AAGCAAA-AAAA-A-------------ATAATTAATATGGTTCTACAA-CAGGAAGGCC-TCCATGTGGCTAAAAACTGGAAACATTGT-TTTATTTGAGTGAAT--ATTTTAC-GTAGAAT--TTTAAAATTTATT-TGTCA--CGGACTATAATTAT-GAACCTA--ACAAG---CTGATCAT-CACAGATCCTGTGGCGAGAGAAA-CTTCTAACCGATG---CAGT-TCACA-GGTTCTGTAGTTTACAAGTTTC-C--CGAGAATTTTGTTGCATGCCTTGGACACCTACTA-CGTGGAGTCATTCAACAATG-TTCTAAACATGTTTCCACAACAAACGCACGCAGTTAGGAGAC---GATCCTACAACATGAGGACGGGCTTAG--CTG--TATGCCATTGGAATGAGAA---CATCGA-CAG--GCTGTCTACCAGAATGTAACAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATCCT-TGGACAGA---GAACATTTCAGTACC-GTGAGGAT---ATCT----GGCAACAT--TTTA--TCCAAGCTTT-GACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTATTTAAAAAAAA---T-------GAGGTTCTACACTGAGGAGGctgtggtttgt
gi|20 : ACAGACAACAAAAG-TG-ATTCGT-CTGG-CAGA-CATAT-GGAATAAAACAGGAAATAATGCTCAA-CTGTGTGATTCGG
gi|21 : acaaaaaattttggacagtgccatGCAGCGATTCAAGC-TTTATTT-GTTTATT-CGATTGAGACAT-ATA----G-------AGTTCTG-AAAGGCAA-GA-A---ATT---C-ACGTAGa
gi|22 : CT----GGCAACAT--TTTA--TCCAAGTTTT-GACTGG-GTGA-CACTATCGAAACTTGTTTC-AATGCTATAAG------GTAGATACATA-CCTTATTATG-ATAACAAAATtatattatataaatacagtatcacaa
gi|23 : A--ATGGTTGCCA-AATCC-----TGA----TG-GA------CAGTCTT-----------------TT-T-GGC--A---GTG-AT-------
gi|24 : TC-ATCAATATATTGCCCAGATTGTCTCCGTCAGCC---ATGT-GTTCTCG-CAAAGA-AGAACAGACAGTCTT----G-----TTTGC-CTGtgtatgggaaaaaaaatataccgtagttatgtaagaaggctatagtctgtaa
gi|25 : AAAA-----ATCCAT-ATGG-TAGA-CATAC-GGAAGTAAATGGGAAATAATGC-----CTGTGTAATTTGTCAGCTCAGAGA--ATttaaaacagaa
gi|26 : acgctgtCAACAAAAG-TG-ATTCGT-CTGG-CAGA-CATAT-GGAATAAAACAGGAAATAATGCTCAA-CTGTGTGATTCGG
gi|27 : aAAGAGAATACTGAATTAGCGGCGATTCAAGC-TTTATTT-GCTTATGCTGATTAGGACAT-
gi|28 : ttccgCAGACTGCAACTAC-GAAACAA--GCAAT---TTCATCAT-CACAGATCCTGTGGCGGA-GAAA-CTTggaa
gi|29 : aCGA-CAG--GCTGTCTACCAGAATGTAACAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATC
gi|3 : GACATGCGACAAAAG-C----------TGG-CAGA-CATAC-TGAACAAAACGGGAAATAATGCCCAA-CTGTGTTATTCAGCAGGTCAGGGA--ATGGATGCCA-AATGC-----CG-----CG-GAGGAGAACAGCCTT---ACATGGG-ACAA--TG-TCGGCCAA---GTGGAT-------AA--AATTGTAG--------CTTA---GT-AGTATATAAGCACA-AAAA-ATAATAATACAAACA------A-ATGGTT-TCCAAGCAGGAAGGCCCTCCTAGTG-CTA----CTG-AAACATTGTGTTTATT--AGTGAATGAATTTTACAGTAGAGTGTTTTAAA--TTACTGTGTCA-TCGG-CT-TGATTATAGAACCTATAGCAAGTCTCTGATCATTCACAGATCCTCTGCTG----AAATCTTCTAACCGACTGGACAGTATCACGCAGTTC-G-AGTTT-C---TTTCGCATC-AGCTTTTTGTGACAGGCCTTGGACACCTACTAGCGTGGAGTGCTT-CACAATGCTTCTAA-CATGTTTC-AAG-CAAA-GCACGCAGTTAGGAGATAGAGATTCTA---------AGC---CTTAGGGCTGC-TATGCCGTTAGAAT-AGAATAGCGTCGAACAGTGGCAGTCTCGCGGCATGTACGCATACGCGGCGAC--CGGC--GAAACGC-AGAAAATCCTCTGAACCAG---GAGCATTTCAG-ACCTGTGAGGAT---ACTTCATGGGCAACAT--TTTA--TCCAAGCTTTTGACTGA-GTGA-CACTATTGAAACTTGTATC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-TTTAAAAAAA---T-------GAAGTTCTACACTGAGGAGGCCTCCACGTGGCTAGAAGTGGTAC
gi|4 : AA-----AATTAACTGCGATTCAATC-TTTAATT-ATTTATTGCAATTATGAT----TG----G-------CGTCCTG-AAAGAGAA-TG-T---GTT---C-CTGTAATGACTACACCAGCGTCCC-ACCTAATTTACGTA--TT--CATCCTCAACCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCAGCC---ATGCGGTTCTT--CA-AGA-ACAACAGG----CTT----G-------TGC-C--ATAAACCAAAA
gi|4 : ga-AATGGGCATAAAATCAAAG-CA-AATTGT-GTGG-CAGA-CATAC-G-AATAAAATGGGAATTA----TCAA-----GTTA-------------GGA--GTGGTTCCCCCAATCCTTGCACGAGGCATGTGT------CAGTGTTTGTACATGGATATAAAGTG-T-AGT--ATAGATGTAT-------AAGGA-CCATAGTCGTTAACCTTAAATGC--GTA---AAATGAA-AAGAAA-------------A------A-ATTATTCTGCAA-CAGAGAGGCC-T-CACGTCGCTAGAA-GTGGAGATATTGA-TTTGCT-GAGTGAAT--AATTTAT--CAG-AT--TTTTAAATGTATT-TTTCATTCATATTGTAATggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgagccatgcaaatgggcataaaatcaaagcaaattgtgtggcagacatacgaataaaatgggaattatcaagttaggagtggttcccccaatccttgcacgaggcatgtgtcagtgtttgtacatggatataaagtgtagtatagatgtataaggaccatagtcgttaaccttaaatgcgtaaaatgaaaagaaaaaattattctgcaacagagaggcctcacgtcgctagaagtggagatattgatttgctgagtgaataatttatcagatttttaaatgtatttttcattcatattgtaatggctaa
gi|5 : gaaaaattaactgcgattcaatctttaattatttattgcaattatgattggcgtcctgaaagagaatgtgttcctgtaatgactacaccagcgtcccacctaatttacgtattcatcctcaaccatcatcgacagaatgccccgattgcctttgtcagccatgcggttcttcaagaacaacaggcttgtgccataaaccaaaaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgagccatgcaAGCAGCGATTCCAGC-TTTATTT-GCTCATTACGATTGAGACAT-AAG----GACCCTATAGTCCTG-AAATACAA-GA-A---ATT---C-ACATAGTT-CTACATGAAATT--CTA-GTAACAACCTCAGTTCCGCGTCTTCCATCATTGATCGATAGAATTCCTGAATTGTCTCCGTCAGAC---ATGC-AATCTTGTCAGGGACACAACAG----TTTTTGGAG-----GTAGCGCCGAT----TAAAAAGAACAggctaa
gi|5 : GACAAATG-CGGATTCGC-CTGGGCAAAACCTACTGG--TAGAATGAGAATTAATGCCCAA-TTGTGCGATTCATCGGATCAGGGA--ATGGTTGCCA-AATTC-----CGA----TG-GA------CAGTCTT---ACATGGG---A---TA-T-GGC--A---GTG-AT-------caaacaggcatcccgcaaaggagtctttttcagaaaaatcttcacgaagaaattgaacatgttagcctgtttaatgagaagctagtaccttagcagaaatttaaaaagacccatacaaataacatacatgtactgtaggacaaatgcggattcgcctgggcaaaacctactggtagaatgagaattaatgcccaattgtgcgattcatcggatcagggaatggttgccaaattccgatggacagtcttacatgggatatggcagtgattgtata
gi|6 : agcagcgattccagctttatttgctcattacgattgagacataaggaccctatagtcctgaaatacaagaaattcacatagttctacatgaaattctagtaacaacctcagttccgcgtcttccatcattgatcgatagaattcctgaattgtctccgtcagacatgcaatcttgtcagggacacaacagtttttggaggtagcgccgattaaaaagaacacaaacaggcatcccgcaaaggagtctttttcagaaaaatcttcacgaagaaattgaacatgttagcctgtttaatgagaagctagtaccttagcagaaatttaaaaagacccatacaaataacatacatgtactgtagAAGAGAA-----A-CTAGCGGCGATTCAAGC-TTTATTC-GCTTACAACCATTGGGAT----TG----G-------AATCCCG-AAAGA-------A---GTT---C-CCGTAGCAACGACACCAGCTTCCCCACCTAACATCCATA--TC--CATCCTCAACCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTGGC-CTGATGGCCCTAAAtgtata
gi|6 : atccg-AATGGACATGCAACAAAAG-CA-ATTCAT-CTGG-CAGA-CATAC-GGAACAAAACGGGAAATAATGCCCAA-CTGTGTTATTCGGCAGCTCAGGGA--ATGGTTGCCA-AATCC-----CGA----GG-GA------CAGCCTT---ACTTGAG-ATATT-TG-T-GGC--A---Gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccagagccatacaaatggacatgcaacaaaagcaattcatctggcagacatacggaacaaaacgggaaataatgcccaactgtgttattcggcagctcagggaatggttgccaaatcccgagggacagccttacttgagatatttgtggcag
gi|8 : atccgaagagaaactagcggcgattcaagctttattcgcttacaaccattgggattggaatcccgaaagaagttcccgtagcaacgacaccagcttccccacctaacatccatatccatcctcaaccatcatcgacagaatgccccgattgcctttgtcagccatgcgttcttgcagagaacaacagacaatcttggtggcctgatggccctaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccagagccataca-AATTGACAT-----AGAAGATA-ATTCGT-ATAG-CAGA-CCTAC-GGCATTAAATAAGAAATAATGCCTGCTCTGTGCGATTCATCGGATCAGGGA--ATGGTTGCCA-AATCA-----CGA----TG-GG------CAGTCTT-----------ACA---TG-T-GGC--G---ATG-ATTCTATAAAA--A-CTGTAC--------CTTA---CC-GAT------GTAAACAAG
gi|9 : gacaaacgctaggtactttgatagaaaattcagagccatacaAAGAGAA-----A-CTAGCGGCGATTCAAGC-TTTATTC-GCTTACAACGATTGGGAT----TG----G-------AATCCTG-AAAGAGAA-GA-AGTTGTT---C-CCGTAGCAACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCAACAGAATGCCCTGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTGGT-CTGATGGACCGAAActgtatagtctgtaagcttcagt
blockSeqs : TACTGAA C TT T ATAAGGACCCTAT A C T C GTT GTT A CAA T C T GTTCCG G G . G T C T G GACCGTG A G C A C A NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN G CGG T G A T T A T T G C A GA C TTGCA GGCA T GGAGAA TGT A TATAAAG G A CA TAG G GGTATAA GG A T TCGTTAAC AAT T ATATAA C A TAATAATACAAACAA T C G C C G AAAA G G TG GA AG A GT A G TT A A TA TCT T AGA T GGA A GC T T A A CGCAT G A TT G C C C A C A C AGA TACAACATGAGGACGGG GG C G TAG A TG T A A G GG GT GA G C AGA T T TTA CATG TC TC T G C A GTAAGT G A A T T G
blockSeqs : AA C T G ATATATATTG . C A . . . . TGA C C G TC . T . . . . C A TGGAGG C . T G A G A ATA . . . . G A T . G G A . . G . . . . T ATATG . C . . T TGAATAA . . A . . . AAA . . ATAATTAAT T C . . C G GAA G . G . G A . A . T G . . . . GA . . . A . . . . CC . C TG . . C . . . . . . TAAGC . . . . . . T A A . . . . . . . T . . . . . . . . . . . T . . T
blockSeqs : A . T T ATATATAG . C . . . . . CAA A C T TT . A . . . . C G GG T . T A A G CG . . . . T A C . T G A . . . . . . . T ATATT . . . . . TCTATAA . . G . . . AAA . . AA T . . . . . . . . . . . . . . . . G . . . . . . . . A C C . . . . . . . . . . . . . . . . . . . A .
blockSeqs : A . C T ATTAAGG . C . . . . . CAA C C A TC . C . . . . C A GT T . C G T A TG . . . . C A T . G T G . . . . . . . T AATA . . . . . . . . G . . . A . . . . . . . . . . . . . . . . . . .
blockSeqs : A . T A AAATAG . G . . . . . TT T . T TC . G . . . . C A GG A . T G G G TG . . . . T T C . A G C . . . . . . . T ACAA . . . . . . . . G . . . A . .
blockSeqs : . T T ATATAG . C . . . . . . . . . . . C . . . . . . GG G . T . . CA . . . . T T C . G G G . . . . . . . T ACA . . . . . . . . A . . . . . .
blockSeqs : . T G TGG . G . . . . . . T . . . . . . G G . . CA . . . . C A C . T T A . . . . . . . T ACA . . . . . . . . G . . . . .
blockSeqs : . T T TGG . C . . . . . C . . . . T A . . T G C . . . . . . . T ACA . . . . . . . . . . . . . .
blockSeqs : . C T TGG . G . . . . . . . . . . . . . . G T A . . . . . . . . AA . . . . . .
blockSeqs : . C A TGG . . . . . . . . T . . . . . . . . . . A . . . . . .
blockSeqs : . . A G . . . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : A****** *** A*****
originalCons : AAGAGAA-----AACTAGCGGCGATTCAAGC-TTTATTC-GCTTATNACGATTGGGACAT-ATG----G-------AGTCCTG-AAAGACAA-GA-A---GTT---C-CCGTAGCGACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTNGC-CCGATGGACCNAAAANAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AATGGACATGCGACAAAAG-CG-ATTCGT-CTGG-CAGA-CATAC-GGAATAAAACGGGAAATAATGCCCAA-CTGTGTGATTCGGCAGATCAGGGA--ATGGTTGCCA-AATCC-----CGA----TG-GA------CAGTCTT---ACATGGG-ACA---TG-T-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GC-AGTA---AAGTAAA-AAGA-A-------------A------A-ATGGTTCTACAA-CAGGAAGGCC-TCCACGTGGCTAGAA-CTGGAAACATTGT-TTTATT-GAGTGAAT--ATTTTAC-GTAGAAT--TTTAAAATTTATT-TGTCA-TCGGACTGTAATTAC-GAACCTA--GCAAG---CTGATCAT-CACAGATCCTGTGGCGGG-GAAA-CTTCTAACCGATT---CAGT-TCACG-GGTTC-GTAGTTTACAAGTTTCGC--CGAGNATTTTGTNGCATGCCTTGGACACCTACTA-CGTGGAGTCATT-AACAATG-TTCTAAACATGTTTC-ACGACAAACGCACGCAGTTAGGAGAC---GATTCTACAACA---GGGC---CTTAG--CTGC-TATGCCGTTGGAATGAGAA---CGTCGA-CAG--GCNGTCTACCGGNATGTANCAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATCCT-TGGACAGA---GAACATTTCAGTACC-GTGAGGAT---ATCT----GGCAACAT--TTTA--TCCAAGCTTT-GACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-TTAAAAAAAA---T-------GAGGTTCTACACTGAGGAGGCCTCCACGTGGCTAGAANTGGTAC
finalCons : AAGAGAAA------CTAGCGGCGATTCAAGC-TTTATTC-GCTTATNACGATTGGGACAT-ATG----G-------AGTCCTG-AAAGACAA-GA-A---GTT---C-CCGTAGCGACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTNGC-CCGATGGACCNAAAANAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AATGGACATGCGACAAAAG-CG-ATTCGT-CTGG-CAGA-CATAC-GGAATAAAACGGGAAATAATGCCCAA-CTGTGTGATTCGGCAGATCAGGGA--ATGGTTGCCA-AATCC-----CGA----TG-GA------CAGTCTT---ACATGGG-ACA---TG-T-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GC-AGTA-----GTAAA-AAGA-A-------------A------A-ATGGTTCTACAA-CAGGAAGGCC-TCCACGTGGCTAGAA-CTGGAAACATTGT-TTTATT-GAGTGAAT--ATTTTAC-GTAGAAT--TTTAAAATTTATT-TGTCA-TCGGACTGTAATTAC-GAACCTA--GCAAG---CTGATCAT-CACAGATCCTGTGGCGGG-GAAA-CTTCTAACCGATT---CAGT-TCACG-GGTTC-GTAGTTTACAAGTTTCGC--CGAGNATTTTGTNGCATGCCTTGGACACCTACTA-CGTGGAGTCATT-AACAATG-TTCTAAACATGTTTC-ACGACAAACGCACGCAGTTAGGAGAC---GATTCTACAACA---GGGC---CTTAG--CTGC-TATGCCGTTGGAATGAGAA---CGTCGA-CAG--GCNGTCTACCGGNATGTANCAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATCCT-TGGACAGA---GAACATTTCAGTACC-GTGAGGAT---ATCT----GGCAACAT--TTTA--TCCAAGCTTT-GACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-TTAAAAAAAA---T-------GAGGTTCTACACTGAGGAGGCCTCCACGTGGCTAGAANTGGTAC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TTGAAACATTCAGAGTCATAAAAGACTAGAAATTCACGTAGTTTCCCAGCTCTGCGTCTACCATTATCGATAAAAATCAGGAATTGTCTGTAAAGCATGAAATCTCGCACGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAACGGTATCTCACAGAGGAGAGCCTTTTTAAAAAAAATCACCAGGAAGAGAATTGAACAATGTTTTTCCCTCGAATAGCCTGAATTGACGAAAGCT
Unaligned ( gi|18 ): GGACAGTCTAACACGGAATAAAGTGTATATGAAAATAAACTTAGCTTAGTACTTTAAAAAAAACTATAGTCTATAAACTTAGGTTGTAAGTAAGAGATCAT
Unaligned ( gi|30 ): CCTGTGTAATTTGTCAGCTCAGAGAATA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 222222222222222222 111 11111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 11111 11111111 3333333 11111111 333333 6666666666666666666666 1 1 1111 1 11 11 11 11 1 22 1 11 111 1 111 1 222 1 11 1 22222 1 1 1 1 222 66666666666666666 11 22 222 1 11 11 11 11 1 111 1 111 1111 11 11 222222 1 55555555555
lowQualScore : 999999 6 6 44 1 0 777777777777777777 3 3 7 3 666 666 3 333 0 2 4 1 999999 0 5 3 888 5 5 0 5 1 4 44444444444 1 5 6 1 1 1 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 0000 4 4 4 4 2 5 3 1 4 1 44 3 11111 7777 3 999999 555 1 88888888 3 6 44 555 7 5555555 66 4 1 66666666 777 4 444444 9999 4 5 4444444444444444444444 3 2 0 0 0 2 0 2 7777 2 0 22 33 22 3 33 3 0 55 0 3 0 33 777 0 666 0 333 3 44 3 7 7 7 77777 6 1 88 3 3 6 3 7 3 7 6 333 77777777777777777 88 55 0 6 333 0 33 1 1 1 8 11 11 11 8 0 777 3 0 777 7777 11 11 8 8 8 8 333333 8 6 8 3 77777777777 1
lowQualScore : ...... . . .. . . .................. . . . . ... ... . ... . . . . ...... . . . ... . . . . . . ........... . . . . . . ........................................................................................................ . .... . . . . . . . . . . .. . ..... .... . ...... ... . ........ . . .. ... . ....... .. . . ........ ... . ...... .... . . ...................... . . . . . . . . .... . . .. .. .. . .. . . .. . . . .. ... . ... . ... . .. . . . . ..... . . .. . . . . . . . . ... ................. .. .. . . ... . .. . . . . .. .. .. . . ... . . ... .... .. .. . . . . ...... . . . . ........... .
lowQualScore : 222222 7 7 88 0 1 444444444444444444 6 6 3 6 444 444 6 000 7 4 3 6 666666 4 0 4 888 0 0 2 0 4 0 55555555555 0 0 2 7 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 1111 0 0 0 0 8 7 6 8 6 6 22 3 77777 1111 3 666666 888 2 77777777 3 7 66 888 3 5555555 11 4 9 11111111 888 4 888888 4444 4 7 8888888888888888888888 2 5 8 0 0 5 2 5 0000 5 0 55 88 55 2 88 2 0 55 8 2 0 88 555 0 888 0 333 3 00 3 3 3 3 00000 7 0 33 3 3 7 3 3 3 3 7 333 33333333333333333 33 33 7 7 333 0 88 0 0 0 0 00 00 00 0 0 555 2 0 555 0000 00 00 0 0 0 0 000000 0 0 0 3 77777777777 0
consensus : AAGAGAA------A-CTAGCGGCGATTCAAGC-TTTATTC-GCTTATNACGATTGGGACAT-ATG----G-------AGTCCTG-AAAGACAA-GA-A---GTT---C-CCGTAGCGACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTNGC-CCGATGGACCNAAAANAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AATGGACATGCGACAAAAG-CG-ATTCGT-CTGG-CAGA-CATAC-GGAATAAAACGGGAAATAATGCCCAA-CTGTGTGATTCGGCAGATCAGGGA--ATGGTTGCCA-AATCC-----CGA----TG-GA------CAGTCTT---ACATGGG-A-CA---TG-T-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GC-AGTA--G--TAA----A-AAGA-A-------------A------A-ATGGTTCTACAA-CAGGAAGGCC-TCCACGTGGCTAGAA-CTGGAAACATTGT-TTTATT-GAGTGAAT--ATTTTAC-GTAGAAT--TTTAAAATTTATT-TGTCA-TCGGACTGTAATTAC-GAACCTA--GCAAG---CTGATCAT-CACAGATCCTGTGGCGGG-GAAA-CTTCTAACCGATT---CAGT-TCACG-GGTTC-GTAGTTTACAAGTTTCGC--CGAGNATTTTGTNGCATGCCTTGGACACCTACTA-CGTGGAGTCATT-AACAATG-TTCTAAACATGTTTC-ACGACAAACGCACGCAGTTAGGAGAC---GATTCTACAACA---GGGC---CTTAG--CTGC-TATGCCGTTGGAATGAGAA---CGTCGA-CAG--GCNGTCTACCGGNATGTANCAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATCCT-TGGACAGA---GAACATTTCAGTACC-GTGAGGAT---ATCT----GGCAACAT--TTTA--TCCAAGCTTT-GACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-TTAAAAAAAA---T-------GAGGTTCTACACTGAGGAGGCCTCCACGTGGCTAGAANTGGTAC
Reference ( family-3727 ) : AAGAGAA------A-CTAGCGGCGATTCAAGC-TTTATTC-GCTTATNACGATTGGGACAT-ATG----G-------AGTCCTG-AAAGACAA-GA-A---GTT---C-CCGTAGCGACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTNGC-CCGATGGACCNAAAANAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AATGGACATGCGACAAAAG-CG-ATTCGT-CTGG-CAGA-CATAC-GGAATAAAACGGGAAATAATGCCCAA-CTGTGTGATTCGGCAGATCAGGGA--ATGGTTGCCA-AATCC-----CGA----TG-GA------CAGTCTT---ACATGGG-A-CA---TG-T-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GC-AGTA--G--TAA----A-AAGA-A-------------A------A-ATGGTTCTACAA-CAGGAAGGCC-TCCACGTGGCTAGAA-CTGGAAACATTGT-TTTATT-GAGTGAAT--ATTTTAC-GTAGAAT--TTTAAAATTTATT-TGTCA-TCGGACTGTAATTAC-GAACCTA--GCAAG---CTGATCAT-CACAGATCCTGTGGCGGG-GAAA-CTTCTAACCGATT---CAGT-TCACG-GGTTC-GTAGTTTACAAGTTTCGC--CGAGNATTTTGTNGCATGCCTTGGACACCTACTA-CGTGGAGTCATT-AACAATG-TTCTAAACATGTTTC-ACGACAAACGCACGCAGTTAGGAGAC---GATTCTACAACA---GGGC---CTTAG--CTGC-TATGCCGTTGGAATGAGAA---CGTCGA-CAG--GCNGTCTACCGGNATGTANCAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATCCT-TGGACAGA---GAACATTTCAGTACC-GTGAGGAT---ATCT----GGCAACAT--TTTA--TCCAAGCTTT-GACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-TTAAAAAAAA---T-------GAGGTTCTACACTGAGGAGGCCTCCACGTGGCTAGAANTGGTAC
gi|1 : AAGAGAA------AACTAGCGGCGATTCAAGC-TTTATTC-GCTTACAATGATTGGGAT----TA----G-------AATCCTG-AAAGAGAA-GT-T---GTT---C-CCGTAGGAACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCGACAGAATGCCCCGATTTCCTTTGTCAGCCGCCATGC-GTTCTTG-CAGAGA-ACAACAGACATTCTT----G-----ATGGC-CTGATGGACCTAAAACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AATGGACATGCGACAAAAG-CT-ATTCAT-CTGG-CAGA-CTTAC-GGAACAAAACGGGAAACAATGCCCAA-CTGTGTTATTCGGCAGGTCAGGGA--ATGGTTGCCA-AATCC-----CGA----GG-GA------CAGCCTT---ACATGGG-A-CA---TG-T-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GT-AGTAAAG--CAA----A-AAAA-A-------------A------A-A-GGTTCTACAA-CAGGAAGGCC-TCCACGTGGCTAGTA-CTGGAAACATTGT-TTTATT-GAGTGAAT--ATTTTAT-GTAGAAT--TTTAAAATTTATT-TGTCA--CGGATTGTAATTAC-GAACCTA--GCAAG---CTGAACAA-CACAGATCCTGTGGCGGG-GAAA-CTTCTAACTGATT---CAGT-TCACA-GGTTC-GTAGTTTACAAGTTT-AC--CGAGGATTTTG-AGCATACCGTGTATACCTACTA-CTAGGAGTCATT-AA-AATG-TTCTAAACATGTTTC-ACGACAAACGCACGCAGTTAGGAGAC---AATTC--CAACA---G------CTTAG--CTATATATGCCATTGGAATGAGAA---CGTCGA-CAG--GCAGTCTACCGGCATGTACCAATAC-C--CAAT--CGGG--AAAACCA-AGAAAATCCT-TGGACAAA---GAACATTTCAGTACC-GTGAGGAA---GTCT----GGCGACAT--TTTA--TCCAAGCTTT-GACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-TAAAAAAAAAATTTAAAAAAAGAGGTTCTACACTGAGGAGGCCTCCACATGGCTAGAACTGGTAC
gi|10 : -TTTATTTTGCTTATTACGAATGAAACATTAAG----G-------TATC----AAAGACTA-GACA---ATT---C-CCGTAG
gi|11 : ttaataacgattttcgaaCAATAC-C---GACGTCGGGGAAAAACCAGAAAAAATCCT-TGGACAGAAGAGAACATTTCAGTAGC-GTGAGGATTTAATCT-----GCAACATTCTTTATCTCCAGTTTTT-GACTAAGGTGACCAATGTGGAAACTTGTTTCAAATGCATTTAGGTAAGTGTAGATACATAGCCT-ATTATGAATAA-AAAGTGTtttcccagtctgcgtctaccattatcgataaaaataggaattgtctgtaagcacatatcgcccaggaagtcttggttgctaattaaacggtaatctcaaagaggagagctttttaaaaaaatcacaggagaattgacccatgt
gi|12 : gtAGCAGCGATTCA------TA-----CTT-TGACGATTGAGACAA-ATA----G-------AGTCATG-TAGGACAA-GA-A---ATT---C-ACATAG-------------TTCCCCA----GCGTC--TA---------------CCATC-ATCGATATAATTCTCGAATTGTCTCTGTCAGAC---ATGC-AATATTG-CAAGGA-ACATTA-ATAGTCTT----GACCGTGTAGC-TCGATAAACC
gi|13 : GTGTGATTCA-CAGACCAGGGAGAATAATTGCCA-AATTTG----CGA----TG-GA------CAGTCTA---ACAAGGG-AATA---TA-TAGGG--A---AT--AT-------AA--A-CTTTAG--------CTTA---GC-AATA-----TAA----A-AAGA-a
gi|14 : cCGATTCAAGCCTTTATTT-GCTTATTACGATTGAGACAT-ATATATTG-------AGTCCTGAAAAGACAATGA-A---ATT---CACTGTAGctacagtctgtaaacttacgttgtaagtaacagatcagtagtagcggtgatcgagc
gi|15 : caaCGATTCAAGCCTTTATTT-GCTTATTACGATTGAGACAT-ATATA--G-------AGTCCTG-AAAGACAA-GA-A---ATT---C-ACGTAGtttctaattctagtaaacaacccaagtcacgtcctccattcatcga
gi|16 : CAGATCAGGGA--ATGGTTACC-------------GA----TG-GA------CAATCTT---ACATGGG-A-CA---TG-T---C--A---GTG-ATGGTATAAAA--A-CTAAAC--------CTTA---CC-AATA-----TAA----A-AAGA-A-------------ttcttaattctagtaacaacccaagttccacgttcctccattcat
gi|17 : catA--ATGGTTGCTA-AATTC-----AAA----TG-GG------CGTTCTT---ACATGGG-A-TATG-TG-T-GGC--A---GTG-ATTGAATAAAA--A-GTGTAC--------CTTA---GC-AAT---G--TAA----A-AAGtgtacactctgtaaactttcag
gi|19 : -CTTTGTGATTCTCCAGACCAGGAA--ATAATTGCCA-AATCG-----CGA----TA-G--------AGTCTA---ACA-AGG-A--A---T---------------------------A--A-CT-TAG--------CTTA---GC-AAT---G--TAA----A-AAGA-gttgaagtctgtaaactttt
gi|2 : aatgtAAGAGAA------A-CTAGCGGCGATTCAAGC-TTTATTC-GCTTACAACGATTGGGAT----TG----G-------AATCCTG-AAAGAGAAAGA-A---GTTGTTC-CCGTAGCAACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCAACAGAATGCCCTGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTCGT-CTGATGGACCCGAAAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGGACATGCGACAAAAG-CG-ATTCATTCTGG-CAGA-CATAC-GGAA--AAACGGGAA-TAATGC--AA-CTGTGTTATTCGGCAGGTCAGGGA--ATGGTTGCCA-AATCC-----CGA----GG-GA--------GCCTT---ACATGGG-A-CA---TGGT-GGC--A---GTG-AT-------AA--A-CTGTAG--------CTTA---GTTAGTAAAG--CAA----A-AAAA-A-------------ATAATTAATATGGTTCTACAA-CAGGAAGGCC-TCCATGTGGCTAAAAACTGGAAACATTGT-TTTATTTGAGTGAAT--ATTTTAC-GTAGAAT--TTTAAAATTTATT-TGTCA--CGGACTATAATTAT-GAACCTA--ACAAG---CTGATCAT-CACAGATCCTGTGGCGAGAGAAA-CTTCTAACCGATG---CAGT-TCACA-GGTTCTGTAGTTTACAAGTTTC-C--CGAGAATTTTGTTGCATGCCTTGGACACCTACTA-CGTGGAGTCATTCAACAATG-TTCTAAACATGTTTCCACAACAAACGCACGCAGTTAGGAGAC---GATCCTACAACATGAGGACGGGCTTAG--CTG--TATGCCATTGGAATGAGAA---CATCGA-CAG--GCTGTCTACCAGAATGTAACAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATCCT-TGGACAGA---GAACATTTCAGTACC-GTGAGGAT---ATCT----GGCAACAT--TTTA--TCCAAGCTTT-GACTGA-GTGA-CACTATTGAAACTTGTTTC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTATTTAAAAAAAA---T-------GAGGTTCTACACTGAGGAGGctgtggtttgt
gi|20 : ACAGACAACAAAAG-TG-ATTCGT-CTGG-CAGA-CATAT-GGAATAAAACAGGAAATAATGCTCAA-CTGTGTGATTCGG
gi|21 : acaaaaaattttggacagtgccatGCAGCGATTCAAGC-TTTATTT-GTTTATT-CGATTGAGACAT-ATA----G-------AGTTCTG-AAAGGCAA-GA-A---ATT---C-ACGTAGa
gi|22 : CT----GGCAACAT--TTTA--TCCAAGTTTT-GACTGG-GTGA-CACTATCGAAACTTGTTTC-AATGCTATAAG------GTAGATACATA-CCTTATTATG-ATAACAAAATtatattatataaatacagtatcacaa
gi|23 : A--ATGGTTGCCA-AATCC-----TGA----TG-GA------CAGTCTT------------------TT-T-GGC--A---GTG-AT-------
gi|24 : TC-ATCAATATATTGCCCAGATTGTCTCCGTCAGCC---ATGT-GTTCTCG-CAAAGA-AGAACAGACAGTCTT----G-----TTTGC-CTGtgtatgggaaaaaaaatataccgtagttatgtaagaaggctatagtctgtaa
gi|25 : AAAA-----ATCCAT-ATGG-TAGA-CATAC-GGAAGTAAATGGGAAATAATGC-----CTGTGTAATTTGTCAGCTCAGAGA--ATttaaaacagaa
gi|26 : acgctgtCAACAAAAG-TG-ATTCGT-CTGG-CAGA-CATAT-GGAATAAAACAGGAAATAATGCTCAA-CTGTGTGATTCGG
gi|27 : aAAGAGAATACTGAA-TTAGCGGCGATTCAAGC-TTTATTT-GCTTATGCTGATTAGGACAT-
gi|28 : ttccgCAGACTGCAACTAC-GAAACAA--GCAAT---TTCATCAT-CACAGATCCTGTGGCGGA-GAAA-CTTggaa
gi|29 : aCGA-CAG--GCTGTCTACCAGAATGTAACAATAC-C--CGAC--CGGG--AAAACCA-AGAAAATC
gi|3 : GACATGCGACAAAAG-C----------TGG-CAGA-CATAC-TGAACAAAACGGGAAATAATGCCCAA-CTGTGTTATTCAGCAGGTCAGGGA--ATGGATGCCA-AATGC-----CG-----CG-GAGGAGAACAGCCTT---ACATGGG-A-CAA--TG-TCGGCCAA---GTGGAT-------AA--AATTGTAG--------CTTA---GT-AGTAT-A--TAAGCACA-AAAA-ATAATAATACAAACA------A-ATGGTT-TCCAAGCAGGAAGGCCCTCCTAGTG-CTA----CTG-AAACATTGTGTTTATT--AGTGAATGAATTTTACAGTAGAGTGTTTTAAA--TTACTGTGTCA-TCGG-CT-TGATTATAGAACCTATAGCAAGTCTCTGATCATTCACAGATCCTCTGCTG----AAATCTTCTAACCGACTGGACAGTATCACGCAGTTC-G-AGTTT-C---TTTCGCATC-AGCTTTTTGTGACAGGCCTTGGACACCTACTAGCGTGGAGTGCTT-CACAATGCTTCTAA-CATGTTTC-AAG-CAAA-GCACGCAGTTAGGAGATAGAGATTCTA---------AGC---CTTAGGGCTGC-TATGCCGTTAGAAT-AGAATAGCGTCGAACAGTGGCAGTCTCGCGGCATGTACGCATACGCGGCGAC--CGGC--GAAACGC-AGAAAATCCTCTGAACCAG---GAGCATTTCAG-ACCTGTGAGGAT---ACTTCATGGGCAACAT--TTTA--TCCAAGCTTTTGACTGA-GTGA-CACTATTGAAACTTGTATC-AATGCTATTAG------GTAGATACATA-CCTAATTATG-ATAACAAAATGTA-TTTAAAAAAA---T-------GAAGTTCTACACTGAGGAGGCCTCCACGTGGCTAGAAGTGGTAC
gi|4 : GAAAA------A-TTAACTGCGATTCAATC-TTTAATT-ATTTATTGCAATTATGAT----TG----G-------CGTCCTG-AAAGAGAA-TG-T---GTT---C-CTGTAATGACTACACCAGCGTCCC-ACCTAATTTACGTA--TT--CATCCTCAACCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCAGCC---ATGCGGTTCTT--CA-AGA-ACAACAGG----CTT----G-------TGC-C--ATAAACCAAAA
gi|4 : -AATGGGCATAAAATCAAAG-CA-AATTGT-GTGG-CAGA-CATAC-G-AATAAAATGGGA-ATTAT---CAA-----GTTA-------------GGA--GTGGTTCCCCCAATCCTTGCACGAGGCATGTGT------CAGTGTTTGTACATGGATA-TAAAGTG-T-AGT--ATAGATGTAT-------AAGGA-CCATAGTCGTTAACCTTAAATGC--GTA--AAATGA----A-AAGAAA-------------A------A-ATTATTCTGCAA-CAGAGAGGCC-T-CACGTCGCTAGAA-GTGGAGATATTGA-TTTGCT-GAGTGAAT--AATTTAT--CAG-AT--TTTTAAATGTATT-TTTCATTCATATTGTAATggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgagccatgcaaatgggcataaaatcaaagcaaattgtgtggcagacatacgaataaaatgggaattatcaagttaggagtggttcccccaatccttgcacgaggcatgtgtcagtgtttgtacatggatataaagtgtagtatagatgtataaggaccatagtcgttaaccttaaatgcgtaaaatgaaaagaaaaaattattctgcaacagagaggcctcacgtcgctagaagtggagatattgatttgctgagtgaataatttatcagatttttaaatgtatttttcattcatattgtaatggctaa
gi|5 : gaaaaattaactgcgattcaatctttaattatttattgcaattatgattggcgtcctgaaagagaatgtgttcctgtaatgactacaccagcgtcccacctaatttacgtattcatcctcaaccatcatcgacagaatgccccgattgcctttgtcagccatgcggttcttcaagaacaacaggcttgtgccataaaccaaaaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctgagccatgcaAGCAGCGATTCCAGC-TTTATTT-GCTCATTACGATTGAGACAT-AAG----GACCCTATAGTCCTG-AAATACAA-GA-A---ATT---C-ACATAGTT-CTACATGAAATT--CTA-GTAACAACCTCAGTTCCGCGTCTTCCATCATTGATCGATAGAATTCCTGAATTGTCTCCGTCAGAC---ATGC-AATCTTGTCAGGGACACAACAG----TTTTTGGAG-----GTAGCGCCGAT----TAAAAAGAACAggctaa
gi|5 : GACAAATG-CGGATTCGC-CTGGGCAAAACCTACTGG--TAGAATGAGAATTAATGCCCAA-TTGTGCGATTCATCGGATCAGGGA--ATGGTTGCCA-AATTC-----CGA----TG-GA------CAGTCTT---ACATGGG----A---TA-T-GGC--A---GTG-AT-------caaacaggcatcccgcaaaggagtctttttcagaaaaatcttcacgaagaaattgaacatgttagcctgtttaatgagaagctagtaccttagcagaaatttaaaaagacccatacaaataacatacatgtactgtaggacaaatgcggattcgcctgggcaaaacctactggtagaatgagaattaatgcccaattgtgcgattcatcggatcagggaatggttgccaaattccgatggacagtcttacatgggatatggcagtgattgtata
gi|6 : agcagcgattccagctttatttgctcattacgattgagacataaggaccctatagtcctgaaatacaagaaattcacatagttctacatgaaattctagtaacaacctcagttccgcgtcttccatcattgatcgatagaattcctgaattgtctccgtcagacatgcaatcttgtcagggacacaacagtttttggaggtagcgccgattaaaaagaacacaaacaggcatcccgcaaaggagtctttttcagaaaaatcttcacgaagaaattgaacatgttagcctgtttaatgagaagctagtaccttagcagaaatttaaaaagacccatacaaataacatacatgtactgtagAAGAGAA------A-CTAGCGGCGATTCAAGC-TTTATTC-GCTTACAACCATTGGGAT----TG----G-------AATCCCG-AAAGA-------A---GTT---C-CCGTAGCAACGACACCAGCTTCCCCACCTAACATCCATA--TC--CATCCTCAACCATC-ATCGACAGAATGCCCCGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTGGC-CTGATGGCCCTAAAtgtata
gi|6 : atccg-AATGGACATGCAACAAAAG-CA-ATTCAT-CTGG-CAGA-CATAC-GGAACAAAACGGGAAATAATGCCCAA-CTGTGTTATTCGGCAGCTCAGGGA--ATGGTTGCCA-AATCC-----CGA----GG-GA------CAGCCTT---ACTTGAG-A-TATT-TG-T-GGC--A---Gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccagagccatacaaatggacatgcaacaaaagcaattcatctggcagacatacggaacaaaacgggaaataatgcccaactgtgttattcggcagctcagggaatggttgccaaatcccgagggacagccttacttgagatatttgtggcag
gi|8 : atccgaagagaaactagcggcgattcaagctttattcgcttacaaccattgggattggaatcccgaaagaagttcccgtagcaacgacaccagcttccccacctaacatccatatccatcctcaaccatcatcgacagaatgccccgattgcctttgtcagccatgcgttcttgcagagaacaacagacaatcttggtggcctgatggccctaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccagagccataca-AATTGACAT-----AGAAGATA-ATTCGT-ATAG-CAGA-CCTAC-GGCATTAAATAAGAAATAATGCCTGCTCTGTGCGATTCATCGGATCAGGGA--ATGGTTGCCA-AATCA-----CGA----TG-GG------CAGTCTT-----------A-CA---TG-T-GGC--G---ATG-ATTCTATAAAA--A-CTGTAC--------CTTA---CC-GAT---G--TAA----ACAAG
gi|9 : gacaaacgctaggtactttgatagaaaattcagagccatacaAAGAGAA------A-CTAGCGGCGATTCAAGC-TTTATTC-GCTTACAACGATTGGGAT----TG----G-------AATCCTG-AAAGAGAA-GA-AGTTGTT---C-CCGTAGCAACGACACCAGTTTCCCCACCTAACATCCTTA--TC--CATCCTCAGCCATC-ATCAACAGAATGCCCTGATTGCCTTTGTCAGCC---ATGC-GTTCTTG-CAGAGA-ACAACAGACAATCTT----G-----GTGGT-CTGATGGACCGAAActgtatagtctgtaagcttcagt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TTGAAACATTCAGAGTCATAAAAGACTAGAAATTCACGTAGTTTCCCAGCTCTGCGTCTACCATTATCGATAAAAATCAGGAATTGTCTGTAAAGCATGAAATCTCGCACGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAACGGTATCTCACAGAGGAGAGCCTTTTTAAAAAAAATCACCAGGAAGAGAATTGAACAATGTTTTTCCCTCGAATAGCCTGAATTGACGAAAGCT
Unaligned ( gi|18 ): GGACAGTCTAACACGGAATAAAGTGTATATGAAAATAAACTTAGCTTAGTACTTTAAAAAAAACTATAGTCTATAAACTTAGGTTGTAAGTAAGAGATCAT
Unaligned ( gi|30 ): CCTGTGTAATTTGTCAGCTCAGAGAATA