lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 1 1111111 33 6666666666666666666666666666666666666 11 4444444444444444444444444 22 333333333333333 222222222222 777777777777777777777 11 444444444444444444 11 1111111 111111111 1 222222222222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22222
lowQualScore : 3 8 000 5 6 4 55 0 888 66 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 55 111 3 0 1 99 555 888888 0 3333333 0 44 5555555555555555555555555555555555555 4 0 55 4 1 5 9999999999999999999999999 2 777 33 99 0 22 2 6 8888 0 000000000000000 2 111111111111 3 8888 3 555555555555555555555 55 55 66 000000000000000000 0 44 1 3 77 3333333 99 88 7 3 999999999 44 6 1 99999 777 5 444444444444 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 66 66 6 4 8 1 9999 22222 66 4
lowQualScore : . . ... . . . .. . ... .. ............................................................................................... .. ... . . . .. ... ...... . ....... . .. ..................................... . . .. . . . ......................... . ... .. .. . .. . . .... . ............... . ............ . .... . ..................... .. .. .. .................. . .. . . .. ....... .. .. . . ......... .. . . ..... ... . ............ .............................................................................................................. . .. .. . . . . .... ..... .. .
lowQualScore : 2 0 000 7 5 4 22 8 111 11 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 00 222 3 5 3 00 000 222222 3 3333333 2 77 7777777777777777777777777777777777777 2 5 55 1 6 0 5555555555555555555555555 9 000 99 11 3 55 7 8 3333 5 000000000000000 9 000000000000 3 3333 3 777777777777777777777 55 00 00 111111111111111111 2 77 9 3 88 0000000 55 66 3 6 777777777 66 7 8 11111 888 0 777777777777 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7 11 11 0 4 3 0 4444 44444 11 4
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATAT-GCCG---TAA-TTTTTGGATA-T-TATC-GTAGGAATAA--AAA----GCA--------T-----GT---G----------N----------ATCAAG-C--------TATAT-A--AGCTATACAC-TTNT--GCAAATTA--TGCA-ATTTA-ACTCGATCGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAA--TCATGTATTCTCCGAGTCGGATAGTG-----T---CNATG--NCA-ATT---TAGATAGT-TTCATGATCACGTGACGTTGCACGCGGAATTTC-G-AA--GTAAACAAT---TACACG-GC-G-ACGTGA--AAGCGTGGACGGCCTGCGGGCTGT-TGGCGG----GACACA----TT--CA-GTG-ATAAAA-GA-CAGT-CAGAC-GG-A-A--AAC-AGGGCAGANAGAA-ATAACCA-CTTTGAGCAATGG--A--GGGGGTT-AAA-TTTCATG-TAT-CAACATGAA-ATCA-CGTCATTC-------CTTCATAA--ATAT--GC-A-T----NA-N-A--AAATCNCCGTTTTCTCCT-----TA-C-ATTGAGTAGA-CC---------AGTA----TC-----A------GT----GTA--TAATTTGTCGAAATTGTCA---CAT--TA-------TTT-TTCATCGTTTATCANACT----GACA------AAACA-A--CAAGGTCTGCTTTTTA--ACA--TCGAACAA-AATACTGTTT----AATACGGCG-C--ATA-TACCTTTA
Reference ( gi|1 ) : GTGTATGATAAGCAAAGTAAATGAACATTTTAATAATAT-GCCG---TAA-TTTTTGGATA-T-TATC-ATAGGAATAA--AGA----GCA--------A-----G----G----------A----------ATCAAG-C--------TATAT-G--AGTTACACACGTTTT--GCGAATTA--TGAA-ATTTA-ATTCAATAGGATTGAAAAGTAAT---CAAGCTA------ATTTCCTATTTAA--TCGTGTATTCGATGAGTCGGATAGTA-----T---CCATG-ACCAGAGT---TGGATAGTTTCCATGACCACGTGACAATGCACGCGGAACTTC-G-AA--GTAAAGAAT---TGCATG-GC-A-ACGTGA--AAATGTGGACGGCCTGGGGGCTGT-TAGTGG----GACACA----TA--CA-ACG-ATAAAA-GA-CAGT-CAGGT-GG-A-A--AAC-AGGGTAGAAAAAA-ATAACCA-AAATGAGCAATGG--A--GGGAATT-AAA-TTTGATG-TAT-AAACATGAA-ATCA-CGTCATTC-------CTTCATAA--ATAT--GC-A-T----AA-T-A--AAATCACCATTTTCTCCT-----TA-C-ATTGACTAGA-TC---------AGTA----TC-----A------GT----GTA--TAATGTGTCAA----GTTA---CAT--TA-------TTT-TTCATCGTTTATCAAATC----GACA------AAAAAAAACCAAGGTCTGCTTTTTA--ACA--TTGAACAA-ATTACTGTTT----AATACGATG-C--ATA-TACCTTTA
gi|17 : AACAATATTGCCGATATAAACCCTTACA-A-T-TATC-G-AGGAATAA--AAA----TCA--------T-----GT---G----------ATTTTTTTTTTATCAAA-C--------TACAT-A----CTGTATATGTTAT--ATAAATTT--TGCA-GTTAA-ATTCAATCGGGTCGAATAGTAAT---CA---TA------AT---GAAT---A--TCAT-TATCC---AAGTCGGATAATA-----
gi|2 : aagagacgtcatcagcATAA-AT-GCCG---TAT-TAATTAGATA-T-TATCGACA-GAATAC--AAATCATGCA--------CTTTTTG----C----------A----------AGCAAG-C--------TATAT-T--AGTTAT-TACTTTAT--GCAAACCA--TGCC-ATTTA-ACTCAGTCGGATTAAAACGTAAA---CAAACTA------ATTTTCTATTTAG--TTATTTCTTCTCCGAATCTGATAaacgtccaat
gi|8 : atattttcctaatttacatgtatttaaaggtATAT-GCTG---CAA-ATTTTTACTA-T-GATC-GTAGGAATAA--AAA----GCA--------T-----GT---G----------T----------TTCA------------TAT-T-A--AGCTATACACTTTCT--GCAAATTA--TACA-ATTGA-ACTCAATAGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAA--TCATGTATTTTCTGAGTTGGATAGTGAACACC---CCAT---TCAGA-------AATA---TTCATAATCACATGACATTGCA----------C-G-AA--GTAAACAAT---TCCATG-GC-G-ACGTGA--CGCTGCAGATGACCTGTTGGCTGT-TGATGG----GCCACA----TC--CA-GCG-ATATAA-GA-CAGT-CAGAC-GG-A-A--AAC-AGGG--GACAGAG---AACCA-CGCTGAGCAAGAG--AAGGGGGGTTCAAA-TTTCATG-T-T-CAGCATAAA-ATCA-C--CATTC-------aagaacgccccttttcgaaatatttatgaccttatgacgccgcccgttgatcaattacgtgaagcgccagcaggttgttggtgggacacattcagggagaaaatgaagtcaaatgggaaaacagtgcagataaaatcactttgggtaatataaaattgttacgcaaaaatgatcttaatacgagtacatactgtaagtgaaatcctcttctgctgcatattttacgcgcgtttgcgcacattcgccaagatgaaagcgtccctcatttatatatttgcattagagaatcccgtgcattgaatagactagtactcctttcatgccaatatataacttatcagcatttcaagatgcatcatactaactaactctgatctgatttacaatatagacaacata
gi|24 : agagctatcatctgtcaaagctaactgtatTAG-GCCA---TAA-TTTTAGGATA-T----C-GTGGGAATAATAATA----ATA--------A-----A----A----------ACA--------ACCAAA-CATGTGTTTTATATCA--AGCTATATACACTTTATGCAAATTA--TGCA-ATTTA-ACTag
gi|14 : gttaatgctacatgcatT-GACA---TAA-TTGTTGGATAGTATATT-GTAGGAATGA--A--------A--------A-----T----G----------T----------GTT----T--------TATATCA--AGCTATACA--------GC-----------A-ACTTG-ATT-----GGTTAAAAAAGTAATATATGAGATA------ATTTCCCATTTAA--TC--ATATTCTTCGAGTCGGACAGAA-----TGCCCCAT
gi|10 : agaattgatatatttttaaaagttatttatgtc---TAA-TTTTTGGGTA-T-CATC-GTAGGAATAA--AAA----GCA--------T-----GTTTTA----------T----------ATCAAG-C--------TATGT-A--AGTT---------TT--ATAAACTC--TGCA-AATTA-AGTCAATAAGATTAAAAAGTAAT---CAAGCTG---------------TTAA--T-AT-TATTCTCTTAATCGGATAGTGAACGCT---CCATT--TCGAAATACATG--TAGT---CATGATCACTTGACGTTGCACGCGTAATTTC-GAAA--GTAAA---------CAC----------TAA--AAGTGGGGGCAGTTCATAGGTTGT-TGACAG----GACATA----TT--C--------AAAA-GA-TAGA-C-----GG-A-A--AAC-AGGATAG----AG-ATAACCATTATTGAGCAATGG--A--tttcaaatattaatgatcacttga
gi|5 : ta---TAA-TATTCTGATA-T-TATC-GTAGGGA--A--AAA----ACATTACTTTTA-----T--------------------------ATCAAG-C--------TATAT----ATTT-------TTTT-----ATTTA--TTAGTAGTTATATGCAA----AT---AAAGTAAT---CAAACTACATGTAATTTCCTATTTAA--TAATGTATTCTCCGAGTCGAATACTG----------AACGCACCA--------------TTTCTA-AATCACATGGCGTTGCACGCG-AAC-------A--AT------T---TACTTG-AC-A-ACGTGA--AAGCGTGTATGGCCTGCTGGCTGT-TGGCAG----GACATACCGGTATTCA-GTG-ATAAAA-GA-CAGT-GAGCC-AG-A-C--AAC-AGGGTAG-AGAGA-ATCACT----TTGAGCAATGG--A--AAG---------------GCTAT-CAA-ATGAA-AT---CGCCATTCAGTACGACTACATAA--TTAT--ACTG-T----AAGC-G--AAATCCCCGTCTCCa
gi|4 : TTTT--ATC-T-TACC-GTAGGAATAA--AAG----GCA--------T-----GT---G----------T----------AT--------------TATAT-C--AATT-CATAAAT-----GCAAATTA--CGCA-ATTTA-ACTCAATTAAATCAAAGAGTAAT---CAATCCA------ATTTCCTATTTAACTTTGTATCTTC---GAGCCGGATAGattggtgtttgtaataattttgctcgcgcttgcgcatatccaccatcaatgccattccttcataaataagcataagaaatttaccgtgttctccttacattgagtagaccagtactc
gi|3 : TA-T-TA-C-AAAGGAATAA--AAA----GCA--------T-----G----ATTGTGCTTTTA----------CTCAAGAC--------TCCAG-T--ATCTATGCACATTAT--GTGATTTAATTGAT--TTTA-ATTTGATTGGATT--AAAGTAAT---CGAAATA------ATTTCGTATggactgaagcggaattcaaagaaaagtgtaaatgaccttcagggtgttgacgggactcagttaaccaataggataaattagagcattggttcgtatttaacgtgaactcactattcagtatgactgccgatatactgtaaataaaatccttatatcctttgatgattgtaataatatttttctcacgtgcttgcgtacatccaccataagtcttaaagagtttatgaatataagcattagaaaatcaccattctcccattacatttagtagaccaatactccttaatgcccgtatatgatttgtcgaaattgtcacatcataatatttttttcatcgtttatcattctgacaaaatacacggcctggtttttacatcaaacaaaacgctgtttaataaggcgcacatgca
gi|29 : CAAG-C--------TATAC-ACAAGTCATACACTTACT--GCAAATTA--TACA-ATTCA-ACTTGATCAAATTCAAAAGTTAT---CAAGCTT------ATACCCTACTTA----CATGTAaaagtctgatgtttcagagccagacgtgaaagcccatttcgaaatatcatcgatctgtgttctttgctgataataaaaaagaacaaatacatggccaatgtgaaaggctggatagctgcgggctttatggttgggcaatcagtggatacaagacagtcggaaatataaacagggcctaagagaacactttgagcaatgaagggagaagccacttttgagcaatgaaaggggagttaaaaattccaacgtttaaacataaacattctcgtacgagctacatactgtaacaatcgtcatctctcgtgaagcgttccgatatttatttttgtatgcttagcacatcactataaatgtcactccttcataatatatgtattttagaatctcccttttcctattgcattgaatagattcaataccagtaatcctttaataacagta
gi|22 : c--AGTTATCCAC-TGTA--GAAAATTA--TGCA-ATCTA-ACTCAGTCGGACTAAAATTTAAT---CAAGCTA------ATT---TATCTAA--TCACATGTTCCCTGAGTCGGATGGT
gi|21 : A-ATTCGATCGAATCAAAAAGAAAT---CAAGCTA------ATATCCgaacgccccgtttcgaaaaatgatgatcacgtgacgtgag
gi|19 : catatttattttcttcaaaacATCGGATTAAAGA-TAAT---CAAGCTA------ATTTCCTGTGTAG--CTATTTCATCTCTGTGTCGGATAATA----------AATG-TGCA-ATT---TAGA-AATATTTATGATTACAT----AT---------ATTTA-G-AA----AACAAAT------ACG-AC-G-GTGCGC--AAGCGTAGACGACCTGTAGGCTGA-TGGCGG----AACACG----CT--CA-GTC-ATAAAG-GA-AAGaaatgctgcggaatattcaacatctcattttcaaaatatacacgatcatatagcctcggaaagttaacaaatatggcgaagcga
gi|15 : GGATTAAAGA-TAAT---CAAGCTA------ATTTCCCGTGTAA--CTATTTCATCTCTGTGTCGGATAATA----------AACG-CACA-ATT---TAGA-AATATTTATGATTACAT----AT---------ATTTA-G-AA----AACAAAT------ACG-AC-G-GTGCGC--AAGCGGAGACGACCTGCAGGCTGA-GGGCGG----AACACG----CT--CA-GTC-ATAAAG-GA-AAG---AGAC-GGTA-A--GAC-AGGGTAaga
gi|36 : AT---CAAGCTA------ATTTCCTATTTAA--TTATGTATTCTCTTAATGGGTTAGTtagaga
gi|7 : ATAGT---CGTGACCACGTGATGTTGCACGCGGAAT----------------AAT---TACATG-GC-A-ACGTGC--AAGCATGGACGACCTGCAGAATGT-TAGCGG----GAGACA----TT--CA-------AAGA-GA-C----------GG-A-A--AAC-AGGGT----AAAG-ATATCCA-CTTTGAGCAATGG--A--AGGGATT-----TT-----------AACATGTA-ATCA-C--CATTg
gi|11 : caaattcgaaTCCGTAATCATGTGATGTTGCACGTGGAATTTC-G-AAAAGTACACCAT---TACATG-GC-G-ACGTGATTGAGCGTGGACGACCTGTGGAATG----ATGG------CA---------------G-AT--CA-GA-CCAT-CAGAT-GG-G-A--AAC-AGGACGGAGAG-----AACCA-TTTTGAG-----------GGGAATT-AAAGTTTCATG--ATCAAATATGAA-ATCA-C--CATTtagtacgactacatgtatatactgtaaacgaaaccctcatctcccatgatgtttctaatatttttctcgcgcgtatgcgcacgttcaccgtaaatgtaaaaaccggtttcgtccaagatttaatagacgagtactcatttaaaaactgtcaagtcatgctattaatgattgtttttcatactgacaaaacacacaaggtactttcagcgtcgaacaaaatactgttttatcaatacttcacgtatacctttg
gi|30 : acgtcccatttcaaaataTTCATGATCACGTGACGATACACGCGGAATTTC-GAAA--GTAAACA--------ATG-GC-G-ACGTGA--AAGTGTGATGGGTCTGCGGtggatcgaatatattttaacctcccagtatgtgatatatttttttctcacccaagtgcgaatgtcattccttcataaatatgcattacaaaaatctccattt
gi|28 : tttaATCACAAGACGTTCCATGCAGAATTTCAG-AA--GTAAATGAT---TACATG-GC-G-ACGTGA--AAGTGAGGAATACCTGTTGACTAT-TTGTGG----GACACA----TT--CA-
gi|9 : ttcaaaatattcatttGTGACGTTGCACGCGGAA-----------GTGAACAAT---TACACG-GC-G-ACGTGA-----------CGACATGCAGGCTGT-TTGTGG----TACAAA----TT--CA-GCG-ATAAAA-GA-CAAT-CAGAT-CG-A-----------TT------AA-AT-ACCA-CTTTGAGAAATGG--AAGGGGGGTTAAAA-CTTCATG--GT-TAACATGAT-ACTA-C--CATTC-------AAT-ACGACTACAT--GCTA-T----AA-A-ACGAAATT-CCATTTT-TCAT-----TA-T-GTTg
gi|3 : AAAGAACAAATACATG-GCCA-ATGTGA--AAGGCTGGATAGC-TGCGGGCTTTATGGTTG----GGCA-A----T---CA-GTGGATACAA-GA-CAGT-CGGAA-AT-ATA--AAC-AGGGCCTAAGAGA-ACACTT-----TGAGCAATGA--A--GGGAtttaattttaaaaaattatcgcgctcttgcgctcatccatccactgtaaacctcattccttcaagataacggctttccccttatatcgagtagactcctgtatataattattcgaaattgtcaaatcattaa
gi|16 : tattacaaaggaataaaaagcatgattgtgcttttactcaagactccagtatctatgcacattatgtgatttaattgattttaatttgattggattaaagtaatcgaaataatttcgtataaagtctgatgtttcagagccagacgtgaaagcccatttcgaaatatcatcgatctgtgttctttgctgataataaaAACAAT---TACAAGAGC-A-ACATGA--AAGCATGGATTGTCCGCAGACTGT-TGGTGGC---AACACA----T---TATGTG-ACAACA-GATCAATGCAAGC-GG-ACATTAACGAGGGTAGAGAGAACAT-TCC----AT-AGCAAGGG--A--TGGGTTA-AAA-TTT--TA-GAT-TAACATAAAGATTA-C--CATTC-------gaagccacttttgagcaatgaaaggggagttaaaaattccaacgtttaaacataaacattctcgtacgagctacatactgtaacaatcgtcatctctcgtgaagcgttccgatatttatttttgtatgcttagcacatcactataaatgtcactccttcataatatatgtattttagaatctcccttttcctattgcattgaatagattcaataccagtaatcctttaataacagta
gi|18 : ATG-GC-G-ACGTGA--AAACGTGGACGGCCTG---------CAGT-------ACACA----TA--CA-GT------AG-GA-C----C------G-G-A--AAT-AGGGCCGATAGAA-CTACTT-----TCAGCAACGGAAA--GGCAATT-CAA-TTTTATG-T-T-CAACATGGC-ATCA-CATaccagtatagcaactactcttatgatt
gi|6 : caTG-AC-ATACGTGA--AAGAGTGGGTGGCATGCTTGCTGT-TTGTGGCTGGGACACA----TT--CA-GCG-ATAAAA-ttcaggacgaatgcggaaatctccgtgtttccaatattttttgtcccgtacttgcgcacatcta
gi|2 : ACGTGAAGCGCCAGCAGGTTGT-TGGTGG----GACACA----TT--CA-GGG-AGAAAATGA--AGT-CAAATGGG-A-A--AAC-AGTGCAGATAAAA-tatgcactgcaaggaagttgaattataaatttcgtattcaacttgaaatcgccatttggtacaactacatgttgtaaacaaatattcctcatcgtccatgatgtttcaaaaaatatttttcttgcgcacttgtacacatccaccataaacattcatttttcattattatgcaatagaaaatcgctgttttcccctaaatgtaacattgagtagacctatcccttaaatacctgcataatttgtcaaaattgtcagatcataatatttttcatggtctatcagatacactagctgacaaaattctaggtcttctttttaacacatcaaacaaaattccatttaatactatacatatatacttttaa
gi|25 : atattttcctaatttacatgtatttaaaggtataaatgccgtattaattagatattatcgacagaatacaaatcatgcactttttgcaagcaagctatattagttattactttatgcaaaccatgccatttaactcagtcggattaaaacgtaaacaaactaattttctatttagttatttcttctccgaatctgataaagaacgccccttttcgaaatatttatgaccttatgacgccgcccgttgatcaattCTGT-TGGTGG----GACGCA----TT--CA-GTG-ATAAAA-CA-CCCT-CAGAT-GG-A-A--AAC-AGTACAGGATA-----AACCA-CTTTGAGCAATGG--AC-TGGAGTT-AAA-TTTGATG-Ttcactttgggtaatataaaattgttacgcaaaaatgatcttaatacgagtacatactgtaagtgaaatcctcttctgctgcatattttacgcgcgtttgcgcacattcgccaagatgaaagcgtccctcatttatatatttgcattagagaatcccgtgcattgaatagactagtactcctttcatgccaatatataacttatcagcatttcaagatgcatcatactaactaactctgatctgatttacaatatagacaacata
gi|6 : cggacggaacacaggatcaAT-AAACAT-----------TCATTT--------TTCATTA--TTAT--GC-AAT----AG---A--AAATCGCTGTTTTCCCCTAAATGTAAC-ATTGAGTAGA-CCTATCCCTTAAATA----CC-------------T----GCA--TAATTTGTCAAAATTGTCAGATCATAATA-------TTT-TTCATGGTCTATCAGAT------ACACTAGCTGACAAAATTCTAGGTCTTCTTTTTAACACA--TCAAACAA-AATTCCATTT----AATACTATA-CATATA-TACTTTTAta
gi|5 : tgacatacgtgaaagagtgggtggcatgcttgctgtttgtggctgggacacattcagcgataaaatatgcactgcaaggaagttgaattataaatttcgtattcaacttgaaatcgccatttggtacaactacatgttgtaaacaaatattcctcatcgtccatgatgtttcaaaaaatatttttcttgcgcacttgtacacatccacc-ATCAATGCCATTC-------CTTCATAA--ATAA--GC-A-T----AA-G-A--AATTTACCGTGTTCTCCT-----TA-C-ATTGAGTAGA-CC---------AGTA----a
gi|11 : taatattctgatattatcgtagggaaaaaacattacttttatatcaagctatatatttttttatttattagtagttatatgcaaataaagtaatcaaactacatgtaatttcctatttaataatgtattctccgagtcgaatactgaacgcaccatttctaaatcacatggcgttgcacgcgaacaatttacttgacaacgtgaaagcgtgtatggcctgctggctgttggcaggacataccggtattcagtgataaaagacagtgagccagacaacagggtagagagaatcactttgagcaatggaaaggctatcaaatgaaatcgccattcagtacgactacataattatactgtaagcgaaatccccgtctccattggtgtttgtaataattttgctcgcgcttgcgcatatccaccA-TGTCATTC-------CTTCATAA--ATAT--GC-A-T----TA-CAA--AAATCTCCATTTctc
gi|3 : acgtcccatttcaaaatatccgtaatcatgtgatgttgcacgtggaatttcgaaaagtacaccattacatggcgacgtgattgagcgtggacgacctgtggaatgatggcagatcagaccatcagatgggaaacaggacggagagaaccattttgaggggaattaaagtttcatgatcaaatatgaaatcaccatttggatcgaatatattttaacctcccagtatgtgatatatttttttctcacccaagtgcgaA-TGTCACTC-------CTTCATAAT-ATAT--GT-A-T----TT-T-A--GAATCTCCCTTTTCCTAT-----TG-C-ATTGAATAGATTC---------AATA----CC-----A------GT----
gi|23 : tattacaaaggaataaaaagcatgattgtgcttttactcaagactccagtatctatgcacattatgtgatttaattgattttaatttgattggattaaagtaatcgaaataatttcgtataaagtctgatgtttcagagccagacgtgaaagcccatttcgaaatatcatcgatctgtgttctttgctgataataaaaaagaacaaatacatggccaatgtgaaaggctggatagctgcgggctttatggttgggcaatcagtggatacaagacagtcggaaatataaacagggcctaagagaacactttgagcaatgaagggagaagccacttttgagcaatgaaaggggagttaaaaattccaacgtttaaacataaacattctcgtacgagctacatactgtaacaatcgtcatctctcgtgaagcgttccgatatttatttttgtatgcttagcacatcactataaA-CGTCATTC-------CTTCCTAA--ATAT--AC-A-T----TA-G-A--AAAC--CCGCTTTCTCCT-----TG-C-ACTGAaatcctttaataacagta
gi|33 : cagaaatcacaattcagtacgactacatcccaatcttctaaaaatatttatcccgcgcttgaacatatttaccataaTTC-------CATCGTAA--AAAT--GC-A-A----AA-T-A--AATTCATCGCTTTCTCCT-----TA-A-AATGAGTAAA-AG---------AGTA----gtcccg
gi|4 : TTTATGA--ATATAAGC-A-T----TA-G-A--AAATCACCATTCTCCCAT-----TA-C-ATTTAGTAGA-CC---------AATACTCCTT-----AATGCCCGT----ATA--TGATTTGTCGAAATTGTCA---CAT--CATAATATTTTT-TTCATCGTTTATCATTCT----GACA------AAATA----CACGGCCTGGTTTTT---ACA--TCAAACAA-AACGCTGTTT----AATAAGGCG-C--ACA-TGCctctt
gi|35 : ttttatcttaccgtaggaataaaaggcatgtgtattatatcaattcataaatgcaaattacgcaatttaactcaattaaatcaaagagtaatcaatccaatttcctatttaactttgtatcttcgagccggatagggactgaagcggaattcaaagaaaagtgtaaatgaccttcagggtgttgacgggactcagttaaccaataggataaattagagcattggttcgtatttaacgtgaactcactattcagtatgactgccgatatactgtaaataaaatccttatatcctttgatgattgtaataatatttttctcacgtgcttgcgtacatccaccataagtcttaaagagTCATAA--ATATT-GC-A-TTAGAAA-T-A--AA-TCACCATTTTCTCCT-----TA-A-AATGAGTAGA-CC---------AGTa
gi|37 : --GC-A-T----TA-G-A--GAATCCCCGTATTCTCCT-----TA-CTATTGAGTAGA-TC---------AGTA----
gi|7 : -T-A--AAA--ACCGGTTTCGTCC-----AA-G-ATTTAATAGA-CG---------AGTAC---TC-----A------TT-----TA--AAAACTGTCAA----GTCA---TGC--TA-------TTA-ATGATTGTTTTTCATACT----GACA------AAACACA--CAAGG--TAC-TTTCA--GCG--TCGAACAA-AATACTGTTTTATCAATACTTCA-C--GTA-TACCTTTct
gi|12 : caaattcgaaatagtcgtgaccacgtgatgttgcacgcggaataattacatggcaacgtgcaagcatggacgacctgcagaatgttagcgggagacattcaaagagacggaaaacagggtaaagatatccactttgagcaatggaagggattttaacatgtaatcaccatttagtacgactacatgtatatactgtaaacgaaaccctcatctcccatgatgtttctaatatttttctcgcgcgtatgcgcacgttcaccgtaaatgTTTCTCCT-----TA-A-ATTGAGTAGA-AT---------AGTA----TTCCTTTA------ATAACCGTAATTAATTTGTCCATACTGTCA---AAT--CA-------TTC-T--ACCTTTCAC--AGTT----AATA---------------CATGGTCAGCTTTTAC--ACA--TCTATCAA-AATACTGTTT----AATGCAGTA-C--ATATTACCg
gi|27 : attcagtatgactacatactgtaaaattctcatttcccatgatatttttattaataaatttttgtgtgtgcttacacacatctaccattcatatcattcctataA---CAT--TT-------CTTGTTCATAGTTTAACACACCAGCTGACA------AAACATA-CGAA---CTGCTTTTTA--ACA--ACGAACAACATT-CTGTTC----AATAC--TG-C--ACA-TA
gi|34 : AAGGTCTGCTTTTTA--AAAAATCGAACAA-ATTATTTTAT----AATATTCCA-C--ATA-TACCTTTAtagttgtatttttaaaggtta
gi|38 : CTTTTTA--ACA--TCGAACAA-AATACTGTTT----GATACG--G-C--ACA-TACATTT
gi|39 : TTTTTA--GCA--TCGAACAA-ATTACTGTTT----AATAAGGTA-C--ATA-TACC
gi|40 : TTA--GCA--TCAAACAA-AATACTGTTT----AATACGGCACC--ATA-TACg
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): CGTATTCACTTGAAATCGCCATTGTACAACTACATAGCTTGCTAAACAATTATTCCTCATCGTCCATCGGATGTTTAAAACAATTGTATTTTCTTGCGCACTTGTACACATTCACCATAAACAATGTTTAAATTTTTTTCGAATTTGTTTATGCAATAGAAATCGCTGTTTTCCCCTATATTACACTGTAGACCTACCCTTAATTACCTGACATTGTATATATTTGTCAAATGTATAATAA
Unaligned ( gi|20 ): TTCAATAGACCATGCAATGCTTCTTTAAAACCAATCAATGATTTGCCGAAATTGTAAGATATTTTCATTTTGAATTGTTTATAAATCTGGCATAATTTATTGCTCTGGTTTCCGACATACAAAAACACCGTTTTTTAAAACAGGGCACACATACCTT
Unaligned ( gi|26 ): ATACCATTGAACACTTTCAGGCTAGAATATTTTTTAGCTTACCCTCAGTTTGTCGATTTATTATCTGAGCTGGATAATGAAGGCCCAATTTAAAATATTAATAATCACGTGGCG
Unaligned ( gi|31 ): ATCTGTCGAAATTGTCAAATCGTATTAATTTTCACAGTTAATCATACTAACAAATCATACGGTTTTGCATGATTCATA
Unaligned ( gi|32 ): CTGTAATCTTTGAATATTTCCGTAAAACTAAATAGCGTTTTATATTAAGCTATATTGTAAGTCATAGACTTTATAAAT
Alignments
lowQualScore : 11111111 666666666666666666666666666666666666666666666666 1111 22222222 8888888888888888888888888888888888 33333333333333333333 111 22222 11 11 11 11 11111111 111111111 44444444444444444444444444444444 2222222222222222222222 11111 222222222222222 3333333 11111
lowQualScore : 6 777 4 3 3 3 0 0 33333333 2 777777777777777777777777777777777777777777777777 3 555 4444 1 3 3 11111111 0 44 44 1 3 444 777777 888 6 0 0 1111111111111111111111111111111111 2 2 2 2 0 11 22222222222222222222 4444 5 2 2 33 4 5555 2 444 2 2 777777 0 555 2 22 33 3 3 6 44 3 222 2 55555 3 3 33 999 00 4 0 0 44 3 3 55 2 33 11111111 66 66 5 1 77 33 444 3 2 77777 555 3 222222222 44444444444444444444444444444444 66 7 66 1111111111111111111111 11111 5 6 777777777777777 2222222 66 55 55 3 66666 555 66 3
lowQualScore : . ... . . . . . . ........ . ................................................ . ... .... . . . ........ . .. .. . . ... ...... ... . . . .................................. . . . . . .. .................... .... . . . .. . .... . ... . . ...... . ... . .. .. . . . .. . ... . ..... . . .. ... .. . . . .. . . .. . .. ........ .. .. . . .. .. ... . . ..... ... . ......... ................................ .. . .. ...................... ..... . . ............... ....... .. .. .. . ..... ... .. .
lowQualScore : 7 888 4 2 6 6 4 2 22222222 0 111111111111111111111111111111111111111111111111 3 888 7777 2 1 1 55555555 7 66 66 4 1 777 777777 333 1 1 9 1111111111111111111111111111111111 7 7 7 5 5 22 44444444444444444444 8888 2 7 7 44 4 3333 5 444 5 5 222222 2 777 7 99 55 1 1 2 22 1 888 1 77777 3 3 66 444 77 4 7 7 33 3 1 55 7 77 88888888 88 33 3 9 33 44 444 4 4 11111 111 1 333333333 33333333333333333333333333333333 99 4 11 4444444444444444444444 11111 0 5 111111111111111 8888888 99 00 00 6 88888 555 77 6
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATAT-GCCG---TAA-TTTTTGGATA-T-TATCGTAGGAATAA--------AAAGCATG-------T---GT----------A-------TCAAG---C--------TA-TA---T-A--AGCT-AT-ACAC---TTN-TGCAAATTA--TGCAATT--TAACTCGAT-CGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--ATGTATTCTCCGAGTCGGATAGTG-------AACG-CC--NATTT---AGA-TAAT-TTC-AT-G-ATCACGTGA-CGTTGCACGCGG-AATTTC-G--AA-GTAAACAATT-ACATG-GC-GACGTGA--AAGCGTGGACGGCCTGCGGG----CTGT-T---GGC-GG-GACA------CATTCAGCG-ATAAAA-GA-CAGT-CAGAC-GG-A-A--AAC-AGGGCA-GANAGAAATAACCACT-TTG-AGCAATGGA--GGGG--GTT-AAA-TTTCATGTATC-AACATGAA-ATCA-CGTCATTC-------CTTCATAA--ATAT--GC-ATNA-GA--AA---ATCNCCGT-TTTCTCCT-----TA-C-ATTGAGTAGA-CC---------AGTA-----------CC-----A------GT----GTA--TAATTTGTCGAAATTGT--CA-----CAT--T---A-------TT-----T-TTCATNGTTTATCANA--------C----TGACAAAACA-A---CAA--GGTCTGCTTTTTA--ACA--TCGAAC-AAAATACTGTTT-----AATAC--GGCA-CATA-TACCTTTA
Reference ( family-3717 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATAT-GCCG---TAA-TTTTTGGATA-T-TATCGTAGGAATAA--------AAAGCATG-------T---GN----------A-------TCAAG---C--------TA-TA---T-A--AGCT-AT-ACAC---TTN-TGCAAATTA--TGCAATT--TAACTCGAT-CGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--ATGTATTCTCCGAGTCGGATAGTG-----TCNATG-NC--AATTT---AGA-TAGT-TTC-AT-G-ATCACGTGA-CGTTGCACGCGG-AATTTC-G--AA-GTAAACAATT-ACACG-GC-GACGTGA--AAGCGTGGACGGCCTGCGGG----CTGT-T---GGC-GG-GACA------CATTCAGTG-ATAAAA-GA-CAGT-CAGAC-GG-A-A--AAC-AGGGCA-GANAGAAATAACCACT-TTG-AGCAATGGA--GGGG--GTT-AAA-TTTCATGTATC-AACATGAA-ATCA-CGTCATTC-------CTTCATAA--ATAT--GC-ATNA-NA--AA---ATCNCCGT-TTTCTCCT-----TA-C-ATTGAGTAGA-CC---------AGTA-----------TC-----A------GT----GTA--TAATTTGTCGAAATTGT--CA-----CAT--T---A-------TT-----T-TTCATCGTTTATCANA--------C----TGACAAAACA-A---CAA--GGTCTGCTTTTTA--ACA--TCGAAC-AAAATACTGTTT-----AATAC--GGCG-CATA-TACCTTTA
gi|1 : AATAATAT-GCCG---TAA-TTTTTGGATA-T-TATCATAGGAATAA--------AGAGCAAG-----------GA----------A-------TCAAG---C--------TA-TA---T-G--AGTT-AC-ACACG--TTT-TGCGAATTA--TGAAATT--TAATTCAAT-AGGATTGAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--GTGTATTCGATGAGTCGGATAGTA-----TCCATG-ACCAGAGTT---GGA-TAGT-TTCCAT-G-ACCACGTGA-CAATGCACGCGG-AACTTC-G--AA-GTAAAGAATT-GCATG-GC-AACGTGA--AAATGTGGACGGCCTGGGGG----CTGT-T---AGT-GG-GACA------CATACAACG-ATAAAA-GA-CAGT-CAGGT-GG-A-A--AAC-AGGGTA-GAAAAAAATAACCAAA-ATG-AGCAATGGA--GGGA--ATT-AAA-TTTGATGTATA-AACATGAA-ATCA-CGTCATTC-------CTTCATAA--ATAT--GC-ATAA-TA--AA---ATCACCAT-TTTCTCCT-----TA-C-ATTGACTAGA-TC---------AGTA-----------TC-----A------GT----GTA--TAATGTGTCAA----GT--TA-----CAT--T---A-------TT-----T-TTCATCGTTTATCAAA--------T----CGACAAAAAA-AAACCAA--GGTCTGCTTTTTA--ACA--TTGAAC-AAATTACTGTTT-----AATAC--GATG-CATA-TACCTTTA
gi|10 : gtgtatgataagcaaagtaaatgaacatttt---TAA-TTTTTGGGTA-T-CATCGTAGGAATAA--------AAAGCATG-------TTTTAT----------A-------TCAAG---C--------TA-TG---T-A--AG-------------TTT-TATAAACTC--TGCAAAT--TAAGTCAAT-AAGATTAAAAAGTAAT---CAAGCTG---------------TTAAT---AT-TATTCTCTTAATCGGATAGTGAACGCTCCATT-TCGAAATAC---ATG-TAGT---C-AT-G-ATCACTTGA-CGTTGCACGCGT-AATTTC-G--AAAGTAAACA---------------C-TAA--AAGTGGGGGCAGTTCATAGG----TTGT-T---GAC-AG-GACA------TATTCA-------AAA-GA-TAG-----AC-GG-A-A--AAC-AG-----GATAGAGATAACCATTATTG-AGCAATGGA--
gi|11 : taATTTCA-AAA-TA---TCC-GT-A-ATCATGTGA-TGTTGCACGTGG-AATTTC-GAAAA-GTACACCATT-ACATG-GC-GACGTGATTGAGCGTGGACGACCTGTGGA----ATGA-T---GGC-AG-A------------TC----------A-GA-CCAT-CAGAT-GG-G-A--AAC-AGGACG-GAGAG----AACCATT-TTG-AG---------GGGA--ATT-AAAGTTTCATG-ATCAAATATGAA-ATCA-C--CATTa
gi|11 : acgtcccA-TGTCATTC-------CTTCATAA--ATAT--GC-ATTACAA--AA---ATCTCCAT-TTtggatcgaatatattttaacctcccagtatgtgatatatttttttctcacccaagtgcgaatgtcattccttcataaatatgcattacaaaaatctccattt
gi|12 : acgtcccatttcaaaatatccgtaatcatgtgatgttgcacgtggaatttcgaaaagtacaccattacatggcgacgtgattgagcgtggacgacctgtggaatgatggcagatcagaccatcagatgggaaacaggacggagagaaccattttgaggggaattaaagtttcatgatcaaatatgaaatcaccatttggatcgaatatattttaacctcccagtatgtgatatatttttttctcacccaagtgcga-TTTCTCCT-----TA-A-ATTGAGTAGA-AT---------AGTA-----------TTCCTTTA------ATAACCGTAATTAATTTGTCCATACTGT--CA-----AAT--C---A-------TTCTACCT-TTCACAGTTAAT----------------------------A---CAT--GGTCAGCTTTTAC--ACA--TCTATC-AAAATACTGTTT-----AATGC--AGTA-CATATTACC
gi|14 : attcagtatgactacatactgtaaaattctcatttcccatgatatttttattaataaatttttgtgtgtgcttacacacatctaccattcatatcattcctataT-GACA---TAA-TTGTTGGATAGTATATTGTAGGAATGA--------AAA---TG-------T---GT----------T-------T----------------TA-TA---TCA--AGCT-AT-ACA--------------------GCAA-------CTTGAT-TGGTTAAAAAAGTAATATATGAGATA------ATTTCCCATTTAATC--A--TATTCTTCGAGTCGGACAG---------AATGCCC--CATTTTC-AAA-TA---TTA-AT-G-ATCACTTGA-
gi|15 : agaattgatatatttttaaaagttatttatgtcGGATTAAAGA-TAAT---CAAGCTA------ATTTCCCGTGTAACT--ATTTCATCTCTGTGTCGGATAATA-------AACGCAC--AATTT---AGA--AATATTT-AT-G-ATTACAT-A-T-------------ATTTA-G--A----AAACAA---ATACG-AC-GGTGCGC--AAGCGGAGACGACCTGCAGG----CTGA-G---GGC-GG-AACA------CGCTCAGTC-ATAAAG-GA-AAG---AGAC-GGTA-A--GAC-AGGGTA-TAGAGA
gi|16 : AACAATT-ACAAGAGC-AACATGA--AAGCATGGATTGTCCGCAGA----CTGT-T---GGT-GGCAACA------CATTATGTG-ACAACA-GATCAATGCAAGC-GG-ACATTAACGAGGGTA-GAGAGAA-----CATT-CCATAGCAAGGGA--TGGG--TTA-AAA-TTTTA-G-ATT-AACATAAAGATTA-C--CATTC-------
gi|17 : AACAATATTGCCGATATAAACCCTTACA-A-T-TATCG-AGGAATAA--------AAATCATG-------T---GATTTTTTTTTTA-------TCAAA---C--------TA-CA---T-A----CT-GT-ATATG--TTA-TATAAATTT--TGCAGTT--AAATTCAAT-CGGGTCGAATAGTAAT---CA---TA------A--------TGAAT---AT-CATTATCCAAGTCGGATAATaccagtatagcaactactcttatgatt
gi|18 : aagagacgtcatcagcATG-GC-GACGTGA--AAACGTGGACGGCCTGCAG----------T-----------ACA------CAT---------------A-CAGT-AGGAC-CG-G-A--AAT-AGGGCC-GATAGAA----CTACT-TTC-AGCAACGGA--AAGGCAATT-CAA-TTTTATGT-TC-AACATGGC-ATCA-CAT--TTC--------------A--GGAC--GA-ATGC-GG--AA---ATCTCCGTGTTTCaaacgtccaat
gi|19 : caAT-CGGATTAAAGA-TAAT---CAAGCTA------ATTTCCTGTGTAGCT--ATTTCATCTCTGTGTCGGATAATA-------AATGTGC--AATTT---AGA--AATATTT-AT-G-ATTACAT-A-T-------------ATTTA-G--A----AAACAA---ATACG-AC-GGTGCGC--AAGCGTAGACGACCTGTAGG----CTGA-T---GGC-GG-AACA------CGCTCAGTC-ATAAAG-GA-AAGcaatattttttgtcccgtacttgcgcacatcta
gi|2 : AT-GCCG---TAT-TAATTAGATA-T-TATCGACAGAATAC--------AAATCATGCACTTTTT---GC----------AA------GCAAG---C--------TA-TA---T-T--AGTT-ATTAC-T---TTA-TGCAAACCA--TGCCATT--TAACTCAGT-CGGATTAAAACGTAAA---CAAACTA------ATTTTCTATTTAGTT--ATTTCTTCTCCGAATCTGATAAAG-------AACG-CC--CCTTTTCGAAA-TA---TTT-AT-G-ACCTTATGA-CGCCGCCCG--------TT-G--A---T---CAATT-----------ACGTG---AAGC-------GCCAGCAGG----TTGT-T---GGT-GG-GACA------CATTCAGGG-AGAAAATGA--AGT-CAAATGGG-A-A--AAC-AGTGCA-GATA-AAAT---CACT-TTG-GGTAATaga
gi|2 : atattttcctaatttacatgtatttaaaggtataaC-AAGATGAA-A--G-CGTCCCTC-------ATTTATAT--ATTT--GC-ATTA-GA--GA---ATC-CCG---------------TG-C-ATTGAATAGA-CT---------AGTACTCCTTTCATGCC-----A------AT----ATA--TAACTTATCAGCATT-T--CA-----ataaaattgttacgcaaaaatgatcttaatacgagtacatactgtaagtgaaatcctcttctgctgcatattttacgcgcgtttgcgcacattcgccaagatgaaagcgtccctcatttatatatttgcattagagaatcccgtgcattgaatagactagtactcctttcatgccaatatataacttatcagcatttcaagatgcatcatactaactaactctgatctgatttacaatatagacaacata
gi|20 : atattttcctaatttacatgtatttaaaggtataaatgccgtattaattagatattatcgacagaatacaaatcatgcactttttgcaagcaagctatattagttattactttatgcaaaccatgccatttaactcagtcggattaaaacgtaaacaaactaattttctatttagttatttcttctccgaatctgataaagaacgccccttttcgaaatatttatgaccttatgacgccgcccgttgatcaattacgtgaagcgccagcaggttgttggtgggacacattcagggagaaaatgaagtcaaatgggaaaacagtgcagataaaatcactttgggtaatataaaattgttacgcaaaaatgatcttaatacgagtacatactgtaagtgaaatcctcttctgctgcatattttacgcgcgtttgcgcacattcgcAAA-CC---------A--A-----------TC-----A------AT----G------ATTTGCCGAAATTGTAAGA-----TAT--TTTCA-------TT-----T-TGAATTGTTTATAAAT--------C----TGGCATAAT------TTATTGCTCTGGTTTCCG--ACA--T---ACAAAAACACCGTTTTTTAAAACAG--GGCA-CACA-TACCTTagatgcatcatactaactaactctgatctgatttacaatatagacaacata
gi|21 : ttcaatagaccatgcaatgcttctttaAATTCGAT-CGAATCAAAAAGAAAT---CAAGCTA------ATATCC
gi|22 : catatttattttcttcaaaac--AGTT-AT-CCAC---TGT-AGAAAATTA--TGCAATC--TAACTCAGT-CGGACTAAAATTTAAT---CAAGCTA------ATT---TATCTAATC--ACATGTTCCCTGAGTCGGATGGTG-------AACGCCC--CGTTT---CGA--AAA-ATG-AT-G-ATCACGTGA-CGTaaatgctgcggaatattcaacatctcattttcaaaatatacacgatcatatagcctcggaaagttaacaaatatggcgaagcga
gi|23 : A-CGTCATTC-------CTTCCTAA--ATAT--AC-ATTA-GA--AA---A--CCCGC-TTTCTCCT-----TG-C-ACTGAGTgag
gi|24 : cagaaatcacaattcagtacgactacatcccaatcttctaaaaatatttatcccgcgcttgaacatatttaccataaCATTAG-GCCA---TAA-TTTTAGGATA-T----CGTGGGAATAATAATAATAAAAACA-------------------------A-------CCAAA---CATGTGTTTTA-TA---TCA--AGCT-AT-ATACACTTTA-TGCAAATTA--TGCAATT--TAACTcccg
gi|25 : gttaatgctacatgGGACGGAACACAGGATCACTGT-T---GGT-GG-GACG------CATTCAGTG-ATAAAA-CA-CCCT-CAGAT-GG-A-A--AAC-AGTACA-G---GATA-AACCACT-TTG-AGCAATGGAC-TGGA--GTT-AAA-TTTGATGT
gi|26 : c--ATTTATTATCTGAGCTGGATAATG-------AAGG-CCC-AATTT---AAAATA---TTA-AT-A-ATCACGTGG-CGta
gi|27 : ataccattgaacactttcaggctagaatattttttagcttaccctcagtttgtcgA-----CAT--T---T-------CT-----TGTTCATAGTTTAACACA--------CCAGCTGACAAAACATA---CGA--A--CTGCTTTTTA--ACA--ACGAAC-AACATTCTGTTC-----AATAC--TGCA-CATA-TA
gi|28 : -TTC-AT-TTATCACAAGA-CGTTCCATGCAG-AATTTCAG--AA-GTAAATGATT-ACATG-GC-GACGTGA--AAGTGAGGAATACCTGTTGA----CTAT-T---TGT-GG-GACA------CATTCAGgttgtatttttaaaggtta
gi|29 : ttcaaaataCAAG---C--------TA-TA---C-ACAAGTC-AT-ACAC---TTACTGCAAATTA--TACAATT--CAACTTGAT-CAAATTCAAAAGTTAT---CAAGCTT------ATACCCTACTTA--C--ATGTA
gi|3 : cTA-T-TA-CAAAGGAATAA--------AAAGCATGAT-----T---GT----------GCTTTTACTCAAGACTC--------CAGTA---T------CT-AT-GCACA--TTA-TGTGATTTAATTG-ATTT--TAATTTGAT-TGGATTAAA--GTAAT---CGAAATA------ATTTCGTATAAAGTCTGATGT---TTCAGAGCCAGAC-GTG-------AAAG-CC--CATTT---CGA--AAT-ATC-ATCG-ATC-TGTGTTCTTTGC---TGATAATAAA-A--AA-G--AACAAAT-ACATG-GCCAATGTGA--AAGGCTGGATAGC-TGCGGG----CTTTAT---GGT-TG-GGCA-------AT-CAGTGGATACAA-GA-CAGT-CGGAA-AT-ATA--AAC-AGGGCCTAAGAGAA-----CACT-TTG-AGCAATGAA--GGGA--G
gi|3 : ATC-ACTAT-AA-AT----GTCACTC-------CTTCATAAT-ATAT--GT-ATTT-TA--GA---ATCTCCCT-TTTCCTAT-----TG-C-ATTGAATAGATTC---------AATA-----------CC-----A------GT----aagccacttttgagcaatgaaaggggagttaaaaattccaacgtttaaacataaacattctcgtacgagctacatactgtaacaatcgtcatctctcgtgaagcgttccgatatttatttttgtatgcttagcacatcactataaatgtcactccttcataatatatgtattttagaatctcccttttcctattgcattgaatagattcaataccagtaatcctttaataacagta
gi|30 : tattacaaaggaataaaaagcatgattgtgcttttactcaagactccagtatctatgcacattatgtgatttaattgattttaatttgattggattaaagtaatcgaaataatttcgtataaagtctgatgtttcagagccagacgtgaaagcccatttcgaaatatcatcgatctgtgttctttgctgataataaaaaagaacaaatacatggccaatgtgaaaggctggatagctgcgggctttatggttgggcaatcagtggatacaagacagtcggaaatataaacagggcctaagagaacactttgagcaatgaagggagaagccacttttgagcaatgaaaggggagttaaaaattccaacgtttaaacataaacattctcgtacgagctacatactgtaacaatcgtcatctctcgtgaagcgttccgatatttatttttgtatgcttagcac-TTC-AT-G-ATCACGTGA-CGATACACGCGG-AATTTC-GA-AA-GTAAACAAT------G-GC-GACGTGA--AAGTGTGATGGGTCTGCGGaatcctttaataacagta
gi|31 : tttaATCTGTCGAAATTGT--CAAATCGTAT--T---A-------AT-----T-TTCACAGTTAATCATA--------C----TAACAAATCA-
gi|32 : CTG---TAA-TCTTTGAATA-T-TTCCGTAAAACTAA--------ATAGCGTT-------TT--AT----------A-------TTAAG---C--------TA-TATTGT-A--AGTC-AT-AGAC---TT--TATAAATtacggttttgcatgattcata
gi|33 : TTC-------CATCGTAA--AAAT--GC-AAAA-TA--AA---TTCATCGC-TTTCTCCT-----TA-A-AATGAGTAAA-AG---------AGTA-----------
gi|34 : AA--GGTCTGCTTTTTA--AAAAATCGAAC-AAATTATTTTAT-----AATAT--TCCA-CATA-TACCTTTActctt
gi|35 : TCATAA--ATATT-GC-ATTA-GA--AATAAATCACCAT-TTTCTCCT-----TA-A-AATGAGTAGA-CC---------AGT
gi|36 : AT---CAAGCTA------ATTTCCTATTTAATT--ATGTATTCTCTTAATGGGTTAGTG-----
gi|37 : --GC-ATTA-GA--GA---ATCCCCGT-ATTCTCCT-----TA-CTATTGAGTAGA-TC---------AGTA-----------
gi|38 : CTTTTTA--ACA--TCGAAC-AAAATACTGTTT-----GATAC--GGCA-CATA-CAct
gi|39 : TTTTTA--GCA--TCGAAC-AAATTACTGTTT-----AATAA--GGTA-CATA-TACCttt
gi|4 : TTTT--ATC-T-TACCGTAGGAATAA--------AAGGCATG-------T---GT----------A-------T----------------TA-TA---T-C--AATTCAT-AAA--------TGCAAATTA--CGCAATT--TAACTCAAT-TAAATCAAAGAGTAAT---CAATCCA------ATTTCCTATTTAACT--TTGTA-TCTTCGAGCCGGATAGg
gi|4 : TTTATGA--ATATAAGC-ATTA-GA--AA---ATCACCAT-TCTCCCAT-----TA-C-ATTTAGTAGA-CC---------AATACTCC-------TT-----AATGCCCGT----ATA--TGATTTGTCGAAATTGT--CA-----CAT--C---ATAATATTTT-----T-TTCATCGTTTATCATT--------C----TGACAAAAT--A---CAC--GGCCTGGTTTTT---ACA--TCAAAC-AAAACGCTGTTT-----AATAA--GGCG-CACA-TGCggactgaagcggaattcaaagaaaagtgtaaatgaccttcagggtgttgacgggactcagttaaccaataggataaattagagcattggttcgtatttaacgtgaactcactattcagtatgactgccgatatactgtaaataaaatccttatatcctttgatgattgtaataatatttttctcacgtgcttgcgtacatccaccataagtcttaaagagtttatgaatataagcattagaaaatcaccattctcccattacatttagtagaccaatactccttaatgcccgtatatgatttgtcgaaattgtcacatcataatatttttttcatcgtttatcattctgacaaaatacacggcctggtttttacatcaaacaaaacgctgtttaataaggcgcacatgca
gi|40 : ttttatcttaccgtaggaataaaaggcatgtgtattatatcaattcataaatgcaaattacgcaatttaactcaattaaatcaaagagtaatcaatccaatttcctatttaactttgtatcttcgagccggatagggactgaagcggaattcaaagaaaagtgtaaatgaccttcagggtgttgacgggactcagttaaccaataggataaattagagcattggttcgtatttaacgtgaactcactattcagtatgactgccgatatactgtaaataaaatccttatatcctttgatgattgtaataatatttttctcacgtgcttgcgtacatccaccataagtcttaaagagTTA--GCA--TCAAAC-AAAATACTGTTT-----AATAC--GGCACCATA-TACa
gi|5 : ---TAA-TATTCTGATA-T-TATCGTAGGGA--A--------AAAACAT--------T---AC----------T-------TT---------------TA-TA---TCA--AGCT-AT-ATAT---TTT-T-----TTA--TTTA-TTAGTAGTTATATGCAAAT---AAAGTAAT---CAAACTACATGTAATTTCCTATTTAATA--ATGTATTCTCCGAGTCGAATACTG-------AACG-C-------------A-CCAT-TTC-TA-A-ATCACATGG-CGTTGCACGCG------------------AACAATTTACTTG-AC-AACGTGA--AAGCGTGTATGGCCTGCTGG----CTGT-T---GGC-AG-GACATACCGGTATTCAGTG-ATAAAA-GA-CAGT-GAGCC-AG-A-C--AAC-AGGGTA-GAGAG----AATCACT-TTG-AGCAATGGA--AAGG-------------C---TATC-AA-ATGAA-AT---CGCCATTCAGTACGACTACATAA--TTAT--ACTGTAAGCG--AA---ATCCCCGT-CTCCt
gi|5 : -ATCAATGCCATTC-------CTTCATAA--ATAA--GC-ATAA-GA--AA---TTTACCGT-GTTCTCCT-----TA-C-ATTGAGTAGA-CC---------AGTA-----------attggtgtttgtaataattttgctcgcgcttgcgcatatccaccatcaatgccattccttcataaataagcataagaaatttaccgtgttctccttacattgagtagaccagtactc
gi|6 : taatattctgatattatcgtagggaaaaaacattacttttatatcaagctatatatttttttatttattagtagttatatgcaaataaagtaatcaaactacatgtaatttcctatttaataatgtattctccgagtcgaatactgaacgcaccatttctaaatcacatggcgttgcacgcgaacaatttacttgacaacgtgaaagcgtgtatggcctgctggctgttggcaggacataccggtattcagtgataaaagacagtgagccagacaacagggtagagagaatcactttgagcaatggaaaggctatcaaatgaaatcgccattcagtacgactacataattatactgtaagcgaaatccccgtctccattggtgtttgtaataattttgctcgcgcttgcgcatatccaccACGTGA--AAGAGTGGGTGGCATGCTTG----CTGT-TTGTGGCTGG-GACA------CATTCAGCG-ATAAAA-ctc
gi|6 : tgacatC-ACCATAAA---CA-T-TCATTT--------TTCATTA--TTAT--GC-AATA-GA--AA---ATCGCTGT-TTTCCCCTAAATGTAAC-ATTGAGTAGA-CCTATCCCTTAAATA-----------CC-------------T----GCA--TAATTTGTCAAAATTGT--CAGAT--CATAAT---A-------TT-----T-TTCATGGTCTATCAGATACACTAGC----TGACAAAAT--T---CTA--GGTCTTCTTTTTAACACA--TCAAAC-AAAATTCCATTT-----AATACTATACA-TATA-TACTTTTAtatgcactgcaaggaagttgaattataaatttcgtattcaacttgaaatcgccatttggtacaactacatgttgtaaacaaatattcctcatcgtccatgatgtttcaaaaaatatttttcttgcgcacttgtacacatccaccataaacattcatttttcattattatgcaatagaaaatcgctgttttcccctaaatgtaacattgagtagacctatcccttaaatacctgcataatttgtcaaaattgtcagatcataatatttttcatggtctatcagatacactagctgacaaaattctaggtcttctttttaacacatcaaacaaaattccatttaatactatacatatatacttttaa
gi|7 : tgacatacgtgaaagagtgggtggcatgcttgctgtttgtggctgggacacattcagcgataaaatatgcactgcaaggaagttgaattataaatttcgtattcaacttgaaatcgccatttggtacaactacatgttgtaaacaaatattcctcatcgtccatgatgtttcaaaaaatatttttcttgcgcacttgtacacatc--AATTCG--AAA-TAGT---C-GT-G-ACCACGTGA-TGTTGCACGCGG-AAT----------------AATT-ACATG-GC-AACGTGC--AAGCATGGACGACCTGCAGA----ATGT-T---AGC-GG-GAGA------CATTC--------AAA-G--------AGAC-GG-A-A--AAC-AGGG-----TAAAGATATCCACT-TTG-AGCAATGGA--AGGG--ATT--------------TT-AACATGTA-ATCA-C--CATTa
gi|7 : caA--AA---A--ACCGG-TTTCGTCC-----AA-G-ATTTAATAGA-CG---------AGTAC----------TC-----A------TT-----TA--AAAACTGTCAA----GT--CA-----TGC--T---A-------TT-----A-ATGATTGTTTTTCATA--------C----TGACAAAACACA---CAA--GGT--ACTTTC-A--GCG--TCGAAC-AAAATACTGTTTTATC-AATAC--TTCA-CGTA-TACCTTTtagtacgactacatgtatatactgtaaacgaaaccctcatctcccatgatgtttctaatatttttctcgcgcgtatgcgcacgttcaccgtaaatgtaaaaaccggtttcgtccaagatttaatagacgagtactcatttaaaaactgtcaagtcatgctattaatgattgtttttcatactgacaaaacacacaaggtactttcagcgtcgaacaaaatactgttttatcaatacttcacgtatacctttg
gi|8 : caaattcgaaatagtcgtgaccacgtgatgttgcacgcggaataattacatggcaacgtgcaagcatggacgacctgcagaatgttagcgggagacattcaaagagacggaaaacagggtaaagatatccactttgagcaatggaagggattttaacatgtaatcaccatttagtacgactacatgtatatactgtaaacgaaaccctcatctcccatgatgtttctaatatttttctcgcgcgtatgcgcacgttcaccgtaaatgtATAT-GCTG---CAA-ATTTTTACTA-T-GATCGTAGGAATAA--------AAAGCATG-------T---GT----------T-------TCA--------------TA-T----T-A--AGCT-AT-ACAC---TTTCTGCAAATTA--TACAATT--GAACTCAAT-AGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--ATGTATTTTCTGAGTTGGATAGTG-----AACAC--CC--CATTC---AGA--AATATTC-AT-A-ATCACATGA-CATTGCA-----------C-G--AA-GTAAACAATT-CCATG-GC-GACGTGA--CGCTGCAGATGACCTGTTGG----CTGT-T---GAT-GG-GCCA------CATCCAGCG-ATATAA-GA-CAGT-CAGAC-GG-A-A--AAC-AGGG---GACAGAG--AACCACG-CTG-AGCAAGAGAAGGGGG--GTTCAAA-TTTCATGT-TC-AGCATAAA-ATCA-C--CATTC-------g
gi|9 : agagctatcatctgtcaaagctaactgtatGTGA-CGTTGCACGCGG-AA-----------GTGAACAATT-ACACG-GC-GACGTGA-----------CGACATGCAGG----CTGT-T---TGT-GG-TACA------AATTCAGCG-ATAAAA-GA-CAAT-CAGAT-----------C--------GAT-TAAAT-ACCACT-TTG-AGAAATGGAAGGGGG--GTTAAAA-CTTCATG-GTT-AACATGAT-ACTA-C--CATTC-------AAT-ACGACTACAT--GCTATAA-AACGAA---AT-TCCAT-TTT-TCAT-----TA-T-GTTag
gi|9 : TCATCCATC-CAC-TGTA-A--A-CCTCATTC-------CTTCA-AG--ATA-----------------------ACGGC-TTTCCCCT-----TA-T-ATCGAGTAGA-CT------------------------CC-----T------GT----ATA--TAATTATTCGAAATTGT--CA-----AAT--C---A-------TT-----tttaattttaaaaaattatcgcgctcttgcgctcatccatccactgtaaacctcattccttcaagataacggctttccccttatatcgagtagactcctgtatataattattcgaaattgtcaaatcattaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CGTATTCACTTGAAATCGCCATTGTACAACTACATAGCTTGCTAAACAATTATTCCTCATCGTCCATCGGATGTTTAAAACAATTGTATTTTCTTGCGCACTTGTACACATTCACCATAAACAATGTTTAAATTTTTTTCGAATTTGTTTATGCAATAGAAATCGCTGTTTTCCCCTATATTACACTGTAGACCTACCCTTAATTACCTGACATTGTATATATTTGTCAAATGTATAATAA
Alignments
lowQualScore : 22222222222222 55555555555555555555555555555555555555555555 111111111 111111 111 4444444444444 333333333333333333 111 22222 111 1111 11 1111111 11111111 1111 33333333333333333333333333333333333333 2222222222222222222222 11111 222222222222222 3333333 11111
lowQualScore : 6 777 4 3 3 3 0 0 11111111111111 55 2 33333333333333333333333333333333333333333333 3 555 222222222 3 999999 0 44 44 1 3 444 777777 888 5 11 0 2 66666 666 33 2 9999999999999 33 2 2 2 2 33 1111 444444444444444444 2 2 1 2 2 33 4 5555 2 444 2 2 777777 0 777 2 22 33 3 3 6 44 3 222 2 55555 3 3 1 222 55 999 4444 4 55 3 2 3333333 11111111 66 55 5 1 2 2 33 444 4 2 0000 444 2 3 77777777777777777777777777777777777777 66 4 0 5 66 1111111111111111111111 11111 5 1 777777777777777 2222222 66 2 55 55 3 66666 555 3 3
lowQualScore : . ... . . . . . . .............. .. . ............................................ . ... ......... . ...... . .. .. . . ... ...... ... . .. . . ..... ... .. . ............. .. . . . . .. .... .................. . . . . . .. . .... . ... . . ...... . ... . .. .. . . . .. . ... . ..... . . . ... .. ... .... . .. . . ....... ........ .. .. . . . . .. ... . . .... ... . . ...................................... .. . . . .. ...................... ..... . . ............... ....... .. . .. .. . ..... ... . .
lowQualScore : 7 888 4 2 6 6 4 2 44444444444444 00 0 11111111111111111111111111111111111111111111 3 888 000000000 1 222222 7 66 66 4 1 777 777777 888 1 99 2 0 77777 333 99 9 8888888888888 44 5 5 5 4 22 6666 666666666666666666 7 7 2 5 5 22 4 3333 5 444 5 5 222222 2 444 7 99 55 1 1 2 22 1 888 1 77777 3 3 5 999 00 111 2222 0 88 1 9 5555555 88888888 88 99 0 9 5 4 22 111 1 2 3333 777 7 1 22222222222222222222222222222222222222 11 0 5 8 11 4444444444444444444444 11111 0 0 111111111111111 8888888 99 0 00 00 6 88888 555 6 6
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATAT-GCCG---TAA-TTTTTGGATA-T-TATCGTAGGAATAA--------------A--AAGCATG-------T---G----------T-----A-------TCAAG---CTA-TA---T-A--AGCT-AT-ACAC-TTT-TGCAAATTA--TGCAATT--TAACTCGAT-CGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--ATGTATTCTCCGAGTCGGATAGTG-----AACG-C-CC-A-TTT---AGA-TA-AT-T--TC-AT-G-ATCACGTGA-CGTTGCACGCGG-AATTTC-G--AA-GTAAACAATT-ACATG-GC-GACGTGA--AAGCGTGGACGGCCTGCGGG----CTGT-T---GGC-GG-GACA------CATTCAGCG-ATAAAA-GA-CAGT-CAGAC-GG-A-A--AAC-AGGGCA-GANAGAAATAACCACT-TTG-AGCAATGGA--GG--GG--GTT-A--AA-TTTCATGTATC-AACATGAA-ATCA-CGTCATTC-------CTTCATAA--ATAT--GC-ATTA-G-A--AA---ATCNCCGT-TTTCTCCT----T---AC-ATTGAGTAGA-CC---------AGTA-----------CC----AGT----GTA--TA-ATTTGTCGAAATTGT--CA-----CAT--T---A-------TT-----T-TTCATNGTTTATCANA--------C----TGACAAAACA-A---CAA--GGTCTGCTTTTTA--ACA--TCGAAC-AAAATACTGTTT-----AATAC--GGCA-CATA-TACCTTTA
Reference ( family-3717 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATAT-GCCG---TAA-TTTTTGGATA-T-TATCGTAGGAATAA--------------A--AAGCATG-------T---G----------T-----A-------TCAAG---CTA-TA---T-A--AGCT-AT-ACAC-TTN-TGCAAATTA--TGCAATT--TAACTCGAT-CGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--ATGTATTCTCCGAGTCGGATAGTG-----AACG-C-CN-A-TTT---AGA-TA-AT-T--TC-AT-G-ATCACGTGA-CGTTGCACGCGG-AATTTC-G--AA-GTAAACAATT-ACATG-GC-GACGTGA--AAGCGTGGACGGCCTGCGGG----CTGT-T---GGC-GG-GACA------CATTCAGCG-ATAAAA-GA-CAGT-CAGAC-GG-A-A--AAC-AGGGCA-GANAGAAATAACCACT-TTG-AGCAATGGA--GG--GG--GTT-A--AA-TTTCATGTATC-AACATGAA-ATCA-CGTCATTC-------CTTCATAA--ATAT--GC-ATNA-G-A--AA---ATCNCCGT-TTTCTCCT----T---AC-ATTGAGTAGA-CC---------AGTA-----------CC----AGT----GTA--TA-ATTTGTCGAAATTGT--CA-----CAT--T---A-------TT-----T-TTCATNGTTTATCANA--------C----TGACAAAACA-A---CAA--GGTCTGCTTTTTA--ACA--TCGAAC-AAAATACTGTTT-----AATAC--GGCA-CATA-TACCTTTA
gi|1 : AATAATAT-GCCG---TAA-TTTTTGGATA-T-TATCATAGGAATAA--------------A--GAGCAAG-----------G----------A-----A-------TCAAG---CTA-TA---T-G--AGTT-AC-ACACGTTT-TGCGAATTA--TGAAATT--TAATTCAAT-AGGATTGAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--GTGTATTCGATGAGTCGGATAGTATCCATGAC--C-AG-A-GTT---GGA-TA-GT-T--TCCAT-G-ACCACGTGA-CAATGCACGCGG-AACTTC-G--AA-GTAAAGAATT-GCATG-GC-AACGTGA--AAATGTGGACGGCCTGGGGG----CTGT-T---AGT-GG-GACA------CATACAACG-ATAAAA-GA-CAGT-CAGGT-GG-A-A--AAC-AGGGTA-GAAAAAAATAACCAAA-ATG-AGCAATGGA--GG--GA--ATT-A--AA-TTTGATGTATA-AACATGAA-ATCA-CGTCATTC-------CTTCATAA--ATAT--GC-ATAA-T-A--AA---ATCACCAT-TTTCTCCT----T---AC-ATTGACTAGA-TC---------AGTA-----------TC----AGT----GTA--TA-ATGTGTCAA----GT--TA-----CAT--T---A-------TT-----T-TTCATCGTTTATCAAA--------T----CGACAAAAAA-AAACCAA--GGTCTGCTTTTTA--ACA--TTGAAC-AAATTACTGTTT-----AATAC--GATG-CATA-TACCTTTA
gi|10 : gtgtatgataagcaaagtaaatgaacatttt---TAA-TTTTTGGGTA-T-CATCGTAGGAATAA--------------A--AAGCATG-------TTTTA----------T-----A-------TCAAG---CTA-TG---T-A--AG-----------TTT-TATAAACTC--TGCAAAT--TAAGTCAAT-AAGATTAAAAAGTAAT---CAAGCTG---------------TTAAT---AT-TATTCTCTTAATCGGATAGTG-----AACG-CTCC-A-TTTCG-AAA-TACATGTAGTC-AT-G-ATCACTTGA-CGTTGCACGCGT-AATTTC-G--AAAGTAAACA---------------C-TAA--AAGTGGGGGCAGTTCATAGG----TTGT-T---GAC-AG-GACA------TATTCA-------AAA-GA-TAG-----AC-GG-A-A--AAC-AG-----GATAGAGATAACCATTATTG-AGCAATGGA--
gi|11 : taACGTC-CC-A-TTTCA-AAA-TA----T--CC-GT-A-ATCATGTGA-TGTTGCACGTGG-AATTTC-GAAAA-GTACACCATT-ACATG-GC-GACGTGATTGAGCGTGGACGACCTGTGGA----ATGA-T---GGC-AG-A------------TC----------A-GA-CCAT-CAGAT-GG-G-A--AAC-AGGACG-GAGAG----AACCATT-TTG-AG---------GG--GA--ATT-A--AAGTTTCATG-ATCAAATATGAA-ATCA-C--CATTa
gi|11 : A-TGTCATTC-------CTTCATAA--ATAT--GC-ATTACA-A--AA---ATCTCCAT-TTtggatcgaatatattttaacctcccagtatgtgatatatttttttctcacccaagtgcgaatgtcattccttcataaatatgcattacaaaaatctccattt
gi|12 : acgtcccatttcaaaatatccgtaatcatgtgatgttgcacgtggaatttcgaaaagtacaccattacatggcgacgtgattgagcgtggacgacctgtggaatgatggcagatcagaccatcagatgggaaacaggacggagagaaccattttgaggggaattaaagtttcatgatcaaatatgaaatcaccatttggatcgaatatattttaacctcccagtatgtgatatatttttttctcacccaagtgcga-TTTCTCCT----T---AA-ATTGAGTAGA-AT---------AGTATT---------CCTTT-AATAACCGTAATTA-ATTTGTCCATACTGT--CA-----AAT--C---A-------TTCTACCT-TTCACAGTTAAT----------------------------A---CAT--GGTCAGCTTTTAC--ACA--TCTATC-AAAATACTGTTT-----AATGC--AGTA-CATATTACC
gi|13 : attcagtatgactacatactgtaaaattctcatttcccatgatatttttattaataaatttttgtgtgtgcttacacacatctaccattcatatcattcctataTAT--GC-AATA-G-A--AA----TCGCTGT-TTTCCCCTATATT---AC-ACTG--TAGA-CCTACCCTTA-ATTA-----------CCTGACATT----GTA--TATATTTGTCAAA
gi|14 : cgtattcacttgaaatcgccattgtacaactacatagcttgctaaacaattattcctcatcgtccatcggatgtttaaaacaattgtattttcttgcgcacttgtacacattcaccataaacaatgtttaaatttttttcgaatttgttT-GACA---TAA-TTGTTGGATAGTATATTGTAGGAATGA--------------A--AA---TG-------T---G----------T-----T-------T--------TA-TA---TCA--AGCT-AT-ACA------------------GCAA-------CTTGAT-TGGTTAAAAAAGTAATATATGAGATA------ATTTCCCATTTAATC--A--TATTCTTCGAGTCGGACA--G-----AATGCC-CC-A-TTTTC-AAA-TA----T--TA-AT-G-ATCACTTGA-tgtataataa
gi|15 : agaattgatatatttttaaaagttatttatgtcGGATTAAAGA-TAAT---CAAGCTA------ATTTCCCGTGTAACT--ATTTCATCTCTGTGTCGGATAATA-----AACG-CACA-A-TTT---AGA--A-ATAT--TT-AT-G-ATTACAT-A-T-------------ATTTA-G--A----AAACAAAT-AC--G-AC-GGTGCGC--AAGCGGAGACGACCTGCAGG----CTGA-G---GGC-GG-AACA------CGCTCAGTC-ATAAAG-GA-AAG---AGAC-GGTA-A--GAC-AGGGTA-TAGAGA
gi|16 : AACAATT-ACAAGAGC-AACATGA--AAGCATGGATTGTCCGCAGA----CTGT-T---GGT-GGCAACA------CATTATGTG-ACAACA-GATCAATGCAAGC-GG-ACATTAACGAGGGTA-GAGAGAA-----CATT-CCATAGCAAGGGA--TG--GG--TTA-A--AA-TTTTA-G-ATT-AACATAAAGATTA-C--CATTC-------
gi|17 : AACAATATTGCCGATATAAACCCTTACA-A-T-TATCG-AGGAATAA--------------A--AATCATG-------T---GATTTTTTTTTT-----A-------TCAAA---CTA-CA---T-A----CT-GT-ATATGTTA-TATAAATTT--TGCAGTT--AAATTCAAT-CGGGTCGAATAGTAAT---CA---TA------A--------TGAAT---AT-CATTATCCAAGTCGGATAATA-----AACG-T-CC-A-accagtatagcaactactcttatgatt
gi|18 : aagagacgtcatcagcATG-GC-GACGTGA--AAACGTGGACGGCCTGCAG----------T-----------ACA------CAT---------------A-CAGT-AGGAC-CG-G-A--AAT-AGGGCC-GATAGAA----CTACT-TTC-AGCAACGGA--AA--GGCAATT-C--AA-TTTTATGT-TC-AACATGGC-ATCA-CAT--TTC--------------A--GGAC--GA-ATGC-G-G--AA---ATCTCCGTGTTTCat
gi|19 : caAT-CGGATTAAAGA-TAAT---CAAGCTA------ATTTCCTGTGTAGCT--ATTTCATCTCTGTGTCGGATAATA-----AATG-TGCA-A-TTT---AGA--A-ATAT--TT-AT-G-ATTACAT-A-T-------------ATTTA-G--A----AAACAAAT-AC--G-AC-GGTGCGC--AAGCGTAGACGACCTGTAGG----CTGA-T---GGC-GG-AACA------CGCTCAGTC-ATAAAG-GA-AAGcaatattttttgtcccgtacttgcgcacatcta
gi|2 : AT-GCCG---TAT-TAATTAGATA-T-TATCGACAGAATAC--------------A--AATCATGCACTTTTT---G----------C-----AA------GCAAG---CTA-TA---T-T--AGTT-ATTAC-T-TTA-TGCAAACCA--TGCCATT--TAACTCAGT-CGGATTAAAACGTAAA---CAAACTA------ATTTTCTATTTAGTT--ATTTCTTCTCCGAATCTGATAAAG-----AACG-C-CC-C-TTTTCGAAA-TA----T--TT-AT-G-ACCTTATGA-CGCCGCCCG--------TT-G--A---T---CAATT-ACGTG-------------AAGC-------GCCAGCAGG----TTGT-T---GGT-GG-GACA------CATTCAGGG-AGAAAATGA--AGT-CAAATGGG-A-A--AAC-AGTGCA-GATA-AAAT---CACT-TTG-GGTAATaga
gi|2 : atattttcctaatttacatgtatttaaaggtataaC-AAGATGAA-A--G-CGTCCCTC-------ATTTATAT--ATTT--GC-ATTA-G-A--GA---ATC-CCG--------------T---GC-ATTGAATAGA-CT---------AGTACTCCTTTCATGCC----AAT----ATA--TA-ACTTATCAGCATT-T--CA-----ataaaattgttacgcaaaaatgatcttaatacgagtacatactgtaagtgaaatcctcttctgctgcatattttacgcgcgtttgcgcacattcgccaagatgaaagcgtccctcatttatatatttgcattagagaatcccgtgcattgaatagactagtactcctttcatgccaatatataacttatcagcatttcaagatgcatcatactaactaactctgatctgatttacaatatagacaacata
gi|20 : atattttcctaatttacatgtatttaaaggtataaatgccgtattaattagatattatcgacagaatacaaatcatgcactttttgcaagcaagctatattagttattactttatgcaaaccatgccatttaactcagtcggattaaaacgtaaacaaactaattttctatttagttatttcttctccgaatctgataaagaacgccccttttcgaaatatttatgaccttatgacgccgcccgttgatcaattacgtgaagcgccagcaggttgttggtgggacacattcagggagaaaatgaagtcaaatgggaaaacagtgcagataaaatcactttgggtaatataaaattgttacgcaaaaatgatcttaatacgagtacatactgtaagtgaaatcctcttctgctgcatattttacgcgcgtttgcgcacattcgcA-----------CC----AAT----CAA--TG-ATTTGCCGAAATTGTAAGA-----TAT--TTTCA-------TT-----T-TGAATTGTTTATAAAT--------C----TGGCATAAT------TTATTGCTCTGGTTTCCG--ACA--T---ACAAAAACACCGTTTTTTAAAACAG--GGCA-CACA-TACCTTagatgcatcatactaactaactctgatctgatttacaatatagacaacata
gi|21 : ttcaatagaccatgcaatgcttctttaaaAATTCGAT-CGAATCAAAAAGAAAT---CAAGCTA------ATATCC-----AA----ATG----CTGCG----GAATATTC-----AACA-T-CTCA-TTTTCAAAA-TA----T--AC-AC-G-ATCATATAG-C------CTCGG-AA---------A-GTTAACAA---ATATG-GC-GAAGCGA--
gi|22 : catatttattttcttcaaaac--AGTT-AT-CCAC-TGT-AGAAAATTA--TGCAATC--TAACTCAGT-CGGACTAAAATTTAAT---CAAGCTA------ATT---TATCTAATC--ACATGTTCCCTGAGTCGGATGGTG-----AACGCC-CC-G-TTT---CGA--A-AA-A--TG-AT-G-ATCACGTGA-CGT
gi|23 : A-CGTCATTC-------CTTCCTAA--ATAT--AC-ATTA-G-A--AA---A--CCCGC-TTTCTCCT----T---GC-ACTGAGTgag
gi|24 : cagaaatcacaattcagtacgactacatcccaatcttctaaaaatatttatcccgcgcttgaacatatttaccataaCATTAG-GCCA---TAA-TTTTAGGATA-T----CGTGGGAATAATAATAATAAAAACAACCAAACATG-------T---G----------TTTTATA-------TCAAG---CTA-TA---T-A-----------CAC-TTTATGCAAATTA--TGCAATT--TAACTcccg
gi|25 : gttaatgctacatgGGACGGAACACAGGATCACTGT-T---GGT-GG-GACG------CATTCAGTG-ATAAAA-CA-CCCT-CAGAT-GG-A-A--AAC-AGTACA-G---GATA-AACCACT-TTG-AGCAATGGAC-TG--GA--GTT-A--AA-TTTGATGT
gi|26 : c--ATTTATTATCTGAGCTGGATAATG-----AAGG-C-CC-AATTT---AAAATA----T--TA-AT-A-ATCACGTGG-CGta
gi|27 : ataccattgaacactttcaggctagaatattttttagcttaccctcagtttgtcgA-----CAT--T---T-------CT-----TGTTCATAGTTTAACACA--------CCAGCTGACAAAACATA---CGA--A--CTGCTTTTTA--ACA--ACGAAC-AACATTCTGTTC-----AATAC--TGCA-CATA-TA
gi|28 : A-ATAT--TC-AT-TTATCACAAGA-CGTTCCATGCAG-AATTTCAG--AA-GTAAATGATT-ACATG-GC-GACGTGA--AAGTGAGGAATACCTGTTGA----CTAT-T---TGT-GG-GACA------CATTCAGgttgtatttttaaaggtta
gi|29 : ttcaaCAAG---CTA-TA---C-ACAAGTC-AT-ACAC-TTACTGCAAATTA--TACAATT--CAACTTGAT-CAAATTCAAAAGTTAT---CAAGCTT------ATACCCTACTTA--C--ATGTA
gi|3 : cTA-T-TA-CAAAGGAATAA--------------A--AAGCATGAT-----T---G----------T-----GCTTTTACTCAAGACTCCAGTA---T------CT-AT-GCACATTA-TGTGATTTAATTG-ATTT--TAATTTGAT-TGGATTAAA--GTAAT---CGAAATA------ATTTCGTATAAAGTCTGATGT---TTCAGAGCCAGAC-GTG-----AAAG-C-CC-A-TTT---CGA--A-AT-A--TC-ATCG-ATC-TGTGTTCTTTGC---TGATAATAAA-A--AA-G--AACAAAT-ACATG-GCCAATGTGA--AAGGCTGGATAGC-TGCGGG----CTTTAT---GGT-TG-GGCA-------AT-CAGTGGATACAA-GA-CAGT-CGGAA-AT-ATA--AAC-AGGGCCTAAGAGAA-----CACT-TTG-AGCAATGAA--GG--GA--G
gi|3 : ATC-ACTAT-AA-AT----GTCACTC-------CTTCATAAT-ATAT--GT-ATTT-T-A--GA---ATCTCCCT-TTTCCTAT----T---GC-ATTGAATAGATTC---------AATA-----------CC----AGT----aagccacttttgagcaatgaaaggggagttaaaaattccaacgtttaaacataaacattctcgtacgagctacatactgtaacaatcgtcatctctcgtgaagcgttccgatatttatttttgtatgcttagcacatcactataaatgtcactccttcataatatatgtattttagaatctcccttttcctattgcattgaatagattcaataccagtaatcctttaataacagta
gi|30 : tattacaaaggaataaaaagcatgattgtgcttttactcaagactccagtatctatgcacattatgtgatttaattgattttaatttgattggattaaagtaatcgaaataatttcgtataaagtctgatgtttcagagccagacgtgaaagcccatttcgaaatatcatcgatctgtgttctttgctgataataaaaaagaacaaatacatggccaatgtgaaaggctggatagctgcgggctttatggttgggcaatcagtggatacaagacagtcggaaatataaacagggcctaagagaacactttgagcaatgaagggagaagccacttttgagcaatgaaaggggagttaaaaattccaacgtttaaacataaacattctcgtacgagctacatactgtaacaatcgtcatctctcgtgaagcgttccgatatttatttttgtatgcttagcac-T--TC-AT-G-ATCACGTGA-CGATACACGCGG-AATTTC-GA-AA-GTAAACA------ATG-GC-GACGTGA--AAGTGTGATGGGTCTGCGGaatcctttaataacagta
gi|31 : ttta-ATCTGTCGAAATTGT--CAAATCGTAT--T---A-------AT-----T-TTCACAGTTAATCATA--------C----TAACAAATCA-
gi|32 : CTG---TAA-TCTTTGAATA-T-TTCCGTAAAACTAA--------------A--TAGCGTT-------TT--A----------T-----A-------TTAAG---CTA-TATTGT-A--AGTC-AT-AGAC-TT--TATAAATtacggttttgcatgattcata
gi|33 : TTC-------CATCGTAA--AAAT--GC-AAAA-T-A--AA---TTCATCGC-TTTCTCCT----T---AA-AATGAGTAAA-AG---------AGTA-----------C
gi|34 : AA--GGTCTGCTTTTTA--AAAAATCGAAC-AAATTATTTTAT-----AATAT--TCCA-CATA-TACCTTTAtctt
gi|35 : TCATAA--ATATT-GC-ATTA-G-A--AATAAATCACCAT-TTTCTCCT----T---AA-AATGAGTAGA-CC---------AGT
gi|36 : AT---CAAGCTA------ATTTCCTATTTAATT--ATGTATTCTCTTAATGGGTTAGTG-----
gi|37 : --GC-ATTA-G-A--GA---ATCCCCGT-ATTCTCCT----T---ACTATTGAGTAGA-TC---------AGTA-----------C
gi|38 : CTTTTTA--ACA--TCGAAC-AAAATACTGTTT-----GATAC--GGCA-CATA-CAt
gi|39 : TTTTTA--GCA--TCGAAC-AAATTACTGTTT-----AATAA--GGTA-CATA-TACCttt
gi|4 : TTTT--ATC-T-TACCGTAGGAATAA--------------A--AGGCATG-------T---G----------T-----A-------T--------TA-TA---T-C--AATTCAT-AAA------TGCAAATTA--CGCAATT--TAACTCAAT-TAAATCAAAGAGTAAT---CAATCCA------ATTTCCTATTTAACT--TTGTA-TCTTCGAGCCGGATAGGG-----Ag
gi|4 : TTTATGA--ATATAAGC-ATTA-G-A--AA---ATCACCAT-TCTCCCAT----T---AC-ATTTAGTAGA-CC---------AATACTCCTTAATG-CC----CGT----ATA--TG-ATTTGTCGAAATTGT--CA-----CAT--C---ATAATATTTT-----T-TTCATCGTTTATCATT--------C----TGACAAAAT--A---CAC--GGCCTGGTTTTT---ACA--TCAAAC-AAAACGCTGTTT-----AATAA--GGCG-CACA-TGCctgaagcggaattcaaagaaaagtgtaaatgaccttcagggtgttgacgggactcagttaaccaataggataaattagagcattggttcgtatttaacgtgaactcactattcagtatgactgccgatatactgtaaataaaatccttatatcctttgatgattgtaataatatttttctcacgtgcttgcgtacatccaccataagtcttaaagagtttatgaatataagcattagaaaatcaccattctcccattacatttagtagaccaatactccttaatgcccgtatatgatttgtcgaaattgtcacatcataatatttttttcatcgtttatcattctgacaaaatacacggcctggtttttacatcaaacaaaacgctgtttaataaggcgcacatgca
gi|40 : ttttatcttaccgtaggaataaaaggcatgtgtattatatcaattcataaatgcaaattacgcaatttaactcaattaaatcaaagagtaatcaatccaatttcctatttaactttgtatcttcgagccggatagggactgaagcggaattcaaagaaaagtgtaaatgaccttcagggtgttgacgggactcagttaaccaataggataaattagagcattggttcgtatttaacgtgaactcactattcagtatgactgccgatatactgtaaataaaatccttatatcctttgatgattgtaataatatttttctcacgtgcttgcgtacatccaccataagtcttaaagagTTA--GCA--TCAAAC-AAAATACTGTTT-----AATAC--GGCACCATA-TACa
gi|5 : ---TAA-TATTCTGATA-T-TATCGTAGGGA--A--------------A--AAACAT-----------------------T-----A-------CT--T---TTA-TA---TCA--AGCT-AT-ATAT-TTT-T-----TTA--TTTA-TTAGTAGTTATATGCAAAT---AAAGTAAT---CAAACTACATGTAATTTCCTATTTAATA--ATGTATTCTCCGAGTCGAATACTG-----AACG-CACC-A-TTT---C---TA-A-------------ATCACATGG-CGTTGCACGCG------------------AACAATTTACTTG-AC-AACGTGA--AAGCGTGTATGGCCTGCTGG----CTGT-T---GGC-AG-GACATACCGGTATTCAGTG-ATAAAA-GA-CAGT-GAGCC-AG-A-C--AAC-AGGGTA-GAGAG----AATCACT-TTG-AGCAATGGA--AA--GG---------------C---TATC-AA-ATGAA-AT---CGCCATTCAGTACGACTACATAA--TTAT--ACTGTAA-GCG--AA---ATCCCCGT-CTCCt
gi|5 : -ATCAATGCCATTC-------CTTCATAA--ATAA--GC-ATAA-G-A--AA---TTTACCGT-GTTCTCCT----T---AC-ATTGAGTAGA-CC---------AGTA-----------Cattggtgtttgtaataattttgctcgcgcttgcgcatatccaccatcaatgccattccttcataaataagcataagaaatttaccgtgttctccttacattgagtagaccagtactc
gi|6 : taatattctgatattatcgtagggaaaaaacattacttttatatcaagctatatatttttttatttattagtagttatatgcaaataaagtaatcaaactacatgtaatttcctatttaataatgtattctccgagtcgaatactgaacgcaccatttctaaatcacatggcgttgcacgcgaacaatttacttgacaacgtgaaagcgtgtatggcctgctggctgttggcaggacataccggtattcagtgataaaagacagtgagccagacaacagggtagagagaatcactttgagcaatggaaaggctatcaaatgaaatcgccattcagtacgactacataattatactgtaagcgaaatccccgtctccattggtgtttgtaataattttgctcgcgcttgcgcatatccaccACGTGA--AAGAGTGGGTGGCATGCTTG----CTGT-TTGTGGCTGG-GACA------CATTCAGCG-ATAAAA-tc
gi|6 : tgacatGCAA-GGA--AGTTGA--ATT-ATAAA-TTTCGTAT-TC-AACTTGAA-AT---CGCCATTtatgcactgcaaggaagttgaattataaatttcgtattcaacttgaaatcgccatttggtacaactacatgttgtaaacaaatattcctcatcgtccatgatgtttcaaaaaatatttttcttgcgcacttgtacacatccaccataaacattcatttttcattattatgcaatagaaaatcgctgttttcccctaaatgtaacattgagtagacctatcccttaaatacctgcataatttgtcaaaattgtcagatcataatatttttcatggtctatcagatacactagctgacaaaattctaggtcttctttttaacacatcaaacaaaattccatttaatactatacatatatacttttaa
gi|6 : tgacatacgtgaaagagtgggtggcatgcttgctgtttgtggctgggacacattcagcgataaaatatgcactC-ACCATAAA---CA-T-TCATTT--------TTCATTA--TTAT--GC-AATA-G-A--AA---ATCGCTGT-TTTCCCCTAAA-TGTAAC-ATTGAGTAGA-CCTATCCCTTAAATA-----------CC------T----GCA--TA-ATTTGTCAAAATTGT--CAGAT--CATAAT---A-------TT-----T-TTCATGGTCTATCAGATACACTAGC----TGACAAAAT--T---CTA--GGTCTTCTTTTTAACACA--TCAAAC-AAAATTCCATTT-----AATACTATACA-TATA-TACTTTTAtggtacaactacatgttgtaaacaaatattcctcatcgtccatgatgtttcaaaaaatatttttcttgcgcacttgtacacatccaccataaacattcatttttcattattatgcaatagaaaatcgctgttttcccctaaatgtaacattgagtagacctatcccttaaatacctgcataatttgtcaaaattgtcagatcataatatttttcatggtctatcagatacactagctgacaaaattctaggtcttctttttaacacatcaaacaaaattccatttaatactatacatatatacttttaa
gi|7 : tgacatacgtgaaagagtgggtggcatgcttgctgtttgtggctgggacacattcagcgataaaatatgcactgcaaggaagttgaattataaatttcgtattcaacttgaaatcgccatttggtacaactacatgttgtaaacaaatattcctcatcgtccatgatgtttcaaaaaatatttttcttgcgcacttgtacacatc--TC-GT-G-ACCACGTGA-TGTTGCACGCGG-AAT----------------AATT-ACATG-GC-AACGTGC--AAGCATGGACGACCTGCAGA----ATGT-T---AGC-GG-GAGA------CATTC--------AAA-G--------AGAC-GG-A-A--AAC-AGGG-----TAAAGATATCCACT-TTG-AGCAATGGA--AG--GG--ATT----------------TT-AACATGTA-ATCA-C--CATTa
gi|7 : caaattcgaaatag-A--AA---A--ACCGG-TTTCGTCC----A---AG-ATTTAATAGA-CG---------AGTA-----------CT----CAT----TTA--AA-AACTGTCAA----GT--CA-----TGC--T---A-------TT-----A-ATGATTGTTTTTCATA--------C----TGACAAAACACA---CAA--GG--TAC-TTTCA--GCG--TCGAAC-AAAATACTGTTTTATC-AATAC--TTCA-CGTA-TACCTTTtagtacgactacatgtatatactgtaaacgaaaccctcatctcccatgatgtttctaatatttttctcgcgcgtatgcgcacgttcaccgtaaatgtaaaaaccggtttcgtccaagatttaatagacgagtactcatttaaaaactgtcaagtcatgctattaatgattgtttttcatactgacaaaacacacaaggtactttcagcgtcgaacaaaatactgttttatcaatacttcacgtatacctttg
gi|8 : caaattcgaaatagtcgtgaccacgtgatgttgcacgcggaataattacatggcaacgtgcaagcatggacgacctgcagaatgttagcgggagacattcaaagagacggaaaacagggtaaagatatccactttgagcaatggaagggattttaacatgtaatcaccatttagtacgactacatgtatatactgtaaacgaaaccctcatctcccatgatgtttctaatatttttctcgcgcgtatgcgcacgttcaccgtaaatgtATAT-GCTG---CAA-ATTTTTACTA-T-GATCGTAGGAATAA--------------A--AAGCATG-------T---G----------T-----T-------TCA------TA-T----T-A--AGCT-AT-ACAC-TTTCTGCAAATTA--TACAATT--GAACTCAAT-AGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--ATGTATTTTCTGAGTTGGATAGTG-----AACACC-CC-A-TTC---AGA--A-ATAT--TC-AT-A-ATCACATGA-CATTGCA-----------C-G--AA-GTAAACAATT-CCATG-GC-GACGTGA--CGCTGCAGATGACCTGTTGG----CTGT-T---GAT-GG-GCCA------CATCCAGCG-ATATAA-GA-CAGT-CAGAC-GG-A-A--AAC-AGGG---GACAGAG--AACCACG-CTG-AGCAAGAGAAGGG--GG--GTTCA--AA-TTTCATGT-TC-AGCATAAA-ATCA-C--CATTC-------g
gi|9 : agagctatcatctgtcaaagctaactgtatGTGA-CGTTGCACGCGG-AA-----------GTGAACAATT-ACACG-GC-GACGTGA-----------CGACATGCAGG----CTGT-T---TGT-GG-TACA------AATTCAGCG-ATAAAA-GA-CAAT-CAGAT-----------C--------GAT-TAAAT-ACCACT-TTG-AGAAATGGAAGGG--GG--GTTAA--AA-CTTCATG-GTT-AACATGAT-ACTA-C--CATTC-------AAT-ACGACTACAT--GCTATAA-A-ACGAA---AT-TCCAT-TTT-TCAT----T---AT-GTTag
gi|9 : TCATCCATC-CAC-TGTA-A--A-CCTCATTC-------CTTCA-----------------A-G-A--TA---A---CGGC-TTTCCCCT----T---AT-ATCGAGTAGA-CT------------------------CC----TGT----ATA--TA-ATTATTCGAAATTGT--CA-----AAT--C---A-------TT-----tttaattttaaaaaattatcgcgctcttgcgctcatccatccactgtaaacctcattccttcaagataacggctttccccttatatcgagtagactcctgtatataattattcgaaattgtcaaatcattaa
Alignments
lowQualScore : 22222222222222 55555555555555555555555555555555555555555555 111111111 1 111 4444444444444 333333333333333333 2222222222222 111 1111 11 1111111 1111 33333333333333333333333333333333333333 2222222222222222222222 11111 222222222222222 333333333 11111
lowQualScore : 6 777 4 3 3 3 0 0 11111111111111 55 2 33333333333333333333333333333333333333333333 3 555 222222222 1 55 3 5 0 44 44 1 3 444 777777 888 5 11 0 2 33 888 2 2 44 9999999999999 33 2 2 2 2 33 1111 444444444444444444 2 2 1 2 2 33 4 5555 2 444 2 2 777777 0 777 2 22 33 3 3 6 44 3 6666666666666 3 3 1 222 55 999 4444 4 55 3 2 3333333 9999999 77 66 2 1 2 2 444 0 4 2 1111 555 2 3 77777777777777777777777777777777777777 66 4 0 5 6666666666666666666666 11111 5 1 777777777777777 333333333 22 55 55 3 66666 555 3 3
lowQualScore : . ... . . . . . . .............. .. . ............................................ . ... ......... . .. . . . .. .. . . ... ...... ... . .. . . .. ... . . .. ............. .. . . . . .. .... .................. . . . . . .. . .... . ... . . ...... . ... . .. .. . . . .. . ............. . . . ... .. ... .... . .. . . ....... ....... .. .. . . . . ... . . . .... ... . . ...................................... .. . . . ...................... ..... . . ............... ......... .. .. .. . ..... ... . .
lowQualScore : 7 888 4 2 6 6 4 2 44444444444444 00 0 11111111111111111111111111111111111111111111 3 888 000000000 5 22 1 4 2 66 66 4 1 777 777777 888 1 99 2 0 77 111 9 9 22 8888888888888 44 5 5 5 4 22 6666 666666666666666666 7 7 2 5 5 22 4 3333 5 444 5 5 222222 2 444 7 99 55 1 1 2 22 1 1111111111111 3 3 5 999 00 111 2222 0 88 1 9 5555555 3333333 33 33 7 1 7 5 444 2 3 4 1111 000 9 1 22222222222222222222222222222222222222 11 0 5 8 9999999999999999999999 11111 0 0 111111111111111 888888888 55 00 00 6 88888 555 6 6
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATAT-GCCG---TAA-TTTTTGGATA-T-TATCGTAGGAATAA--------------A--AAGCATG-------T---G----------T-----A-------TCAAG---CTA-TA---T-A--AGCT-ATACAC-TT-T-TGCAAATTA--TGCAATT--TAACTCGAT-CGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--ATGTATTCTCCGAGTCGGATAGTG--AACG-C-C-CA-T--TT---AGA-TA-AT-T--TC-AT-G-ATCACGTGA-CGTTGCACGCGG-AATTTC-G--AA-GTAAACAATT-ACATG-GC-GACGTGA--AAGCGTGGACGGCCTGCGGG----CTGT-T---GGC-GG-GACA------CATTCAGCG-ATAAAA-GA-CAGT-CAGAC-GG-A-A--AAC-AGGGCA-GANAGAAATAACCACT-TTG-AGCAATGGA--GG--GG--GTT-A--AA-TTTCATGTATC-AACATGAA-ATCA-CGTCATTC-------CTTCATAA--ATAT--GC-ATTA-G-AAA---ATCNCCGT-TTTCCCCT----T---AC-ATTGAGTAGA-CC---------AGTA-----------CC----AGT----GTA--TA-ATTTGTCGAAATTGTCA-----CAT--T---A-------TT-----T-TTCATNGTTTATCANA--------C----TGACAAAAC--A-A---CAAGGTCTGCTTTTTA--ACA--TCGAACAAAA-TACTGTTT-----AATAC--GGCA-CATA-TACCTTTA
Reference ( family-3717 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATAT-GCCG---TAA-TTTTTGGATA-T-TATCGTAGGAATAA--------------A--AAGCATG-------T---G----------T-----A-------TCAAG---CTA-TA---T-A--AGCT-ATACAC-TT-T-TGCAAATTA--TGCAATT--TAACTCGAT-CGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--ATGTATTCTCCGAGTCGGATAGTG--AACG-C-C-CA-T--TT---AGA-TA-AT-T--TC-AT-G-ATCACGTGA-CGTTGCACGCGG-AATTTC-G--AA-GTAAACAATT-ACATG-GC-GACGTGA--AAGCGTGGACGGCCTGCGGG----CTGT-T---GGC-GG-GACA------CATTCAGCG-ATAAAA-GA-CAGT-CAGAC-GG-A-A--AAC-AGGGCA-GANAGAAATAACCACT-TTG-AGCAATGGA--GG--GG--GTT-A--AA-TTTCATGTATC-AACATGAA-ATCA-CGTCATTC-------CTTCATAA--ATAT--GC-ATTA-G-AAA---ATCNCCGT-TTTCTCCT----T---AC-ATTGAGTAGA-CC---------AGTA-----------CC----AGT----GTA--TA-ATTTGTCGAAATTGTCA-----CAT--T---A-------TT-----T-TTCATNGTTTATCANA--------C----TGACAAAAC--A-A---CAAGGTCTGCTTTTTA--ACA--TCGAACAAAA-TACTGTTT-----AATAC--GGCA-CATA-TACCTTTA
gi|1 : AATAATAT-GCCG---TAA-TTTTTGGATA-T-TATCATAGGAATAA--------------A--GAGCAAG-----------G----------A-----A-------TCAAG---CTA-TA---T-G--AGTT-ACACACGTT-T-TGCGAATTA--TGAAATT--TAATTCAAT-AGGATTGAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--GTGTATTCGATGAGTCGGATAGTATCCATG-A-C-CA-GAGTT---GGA-TA-GT-T--TCCAT-G-ACCACGTGA-CAATGCACGCGG-AACTTC-G--AA-GTAAAGAATT-GCATG-GC-AACGTGA--AAATGTGGACGGCCTGGGGG----CTGT-T---AGT-GG-GACA------CATACAACG-ATAAAA-GA-CAGT-CAGGT-GG-A-A--AAC-AGGGTA-GAAAAAAATAACCAAA-ATG-AGCAATGGA--GG--GA--ATT-A--AA-TTTGATGTATA-AACATGAA-ATCA-CGTCATTC-------CTTCATAA--ATAT--GC-ATAA-T-AAA---ATCACCAT-TTTCTCCT----T---AC-ATTGACTAGA-TC---------AGTA-----------TC----AGT----GTA--TA-ATGTGTCAA----GTTA-----CAT--T---A-------TT-----T-TTCATCGTTTATCAAA--------T----CGACAAAAA--A-AAACCAAGGTCTGCTTTTTA--ACA--TTGAACAAAT-TACTGTTT-----AATAC--GATG-CATA-TACCTTTA
gi|10 : gtgtatgataagcaaagtaaatgaacatttt---TAA-TTTTTGGGTA-T-CATCGTAGGAATAA--------------A--AAGCATG-------TTTTA----------T-----A-------TCAAG---CTA-TG---T-A--AG----------TT-T-TATAAACTC--TGCAAAT--TAAGTCAAT-AAGATTAAAAAGTAAT---CAAGCTG---------------TTAAT---AT-TATTCTCTTAATCGGATAGTG--AACG-CTC-CA-T--TTCG-AAA-TACATGTAGTC-AT-G-ATCACTTGA-CGTTGCACGCGT-AATTTC-G--AAAGTAAACA---------------C-TAA--AAGTGGGGGCAGTTCATAGG----TTGT-T---GAC-AG-GACA------TATTCA-------AAA-GA-TAG-----AC-GG-A-A--AAC-AG-----GATAGAGATAACCATTATTG-AGCAATGGA--
gi|11 : taACGTC-C-CA-T--TTCA-AAA-TA----T--CC-GT-A-ATCATGTGA-TGTTGCACGTGG-AATTTC-GAAAA-GTACACCATT-ACATG-GC-GACGTGATTGAGCGTGGACGACCTGTGGA----ATGA-T---GGC-AG-A------------TC----------A-GA-CCAT-CAGAT-GG-G-A--AAC-AGGACG-GAGAG----AACCATT-TTG-AG---------GG--GA--ATT-A--AAGTTTCATG-ATCAAATATGAA-ATCA-C--CATTa
gi|11 : A-TGTCATTC-------CTTCATAA--ATAT--GC-ATTACA-AAA---ATCTCCAT-TTtggatcgaatatattttaacctcccagtatgtgatatatttttttctcacccaagtgcgaatgtcattccttcataaatatgcattacaaaaatctccattt
gi|12 : acgtcccatttcaaaatatccgtaatcatgtgatgttgcacgtggaatttcgaaaagtacaccattacatggcgacgtgattgagcgtggacgacctgtggaatgatggcagatcagaccatcagatgggaaacaggacggagagaaccattttgaggggaattaaagtttcatgatcaaatatgaaatcaccatttggatcgaatatattttaacctcccagtatgtgatatatttttttctcacccaagtgcga-TTTCTCCT----T---AA-ATTGAGTAGA-AT---------AGTATT---------CCTTT-AATAACCGTAATTA-ATTTGTCCATACTGTCA-----AAT--C---A-------TTCTACCT-TTCACAGTTAAT------------------------------A---CATGGTCAGCTTTTAC--ACA--TCTATCAAAA-TACTGTTT-----AATGC--AGTA-CATATTACC
gi|13 : attcagtatgactacatactgtaaaattctcatttcccatgatatttttattaataaatttttgtgtgtgcttacacacatctaccattcatatcattcctataTAT--GC-AATA-G-AAA----TCGCTGT-TTTCCCCTATATT---AC-ACTG--TAGA-CCTACCCTTA-ATTA-----------CCTGACATT----GTA--TATATTTGTCAAA
gi|14 : cgtattcacttgaaatcgccattgtacaactacatagcttgctaaacaattattcctcatcgtccatcggatgtttaaaacaattgtattttcttgcgcacttgtacacattcaccataaacaatgtttaaatttttttcgaatttgttT-GACA---TAA-TTGTTGGATAGTATATTGTAGGAATGA--------------A--AA---TG-------T---G----------T-----T-------T--------TA-TA---TCA--AGCT-ATACA-------------------GCAA-------CTTGAT-TGGTTAAAAAAGTAATATATGAGATA------ATTTCCCATTTAATC--A--TATTCTTCGAGTCGGACA--G--AATGCC-C-CA-T--TTTC-AAA-TA----T--TA-AT-G-ATCACTTGA-tgtataataa
gi|15 : agaattgatatatttttaaaagttatttatgtcGGATTAAAGA-TAAT---CAAGCTA------ATTTCCCGTGTAACT--ATTTCATCTCTGTGTCGGATAATA--AACG-CAC-AA-T--TT---AGA--A-ATAT--TT-AT-G-ATTACAT-A-T-------------ATTTA-G--A----AAACAAAT-AC--G-AC-GGTGCGC--AAGCGGAGACGACCTGCAGG----CTGA-G---GGC-GG-AACA------CGCTCAGTC-ATAAAG-GA-AAG---AGAC-GGTA-A--GAC-AGGGTA-TAGAGA
gi|16 : AACAATT-ACAAGAGC-AACATGA--AAGCATGGATTGTCCGCAGA----CTGT-T---GGT-GGCAACA------CATTATGTG-ACAACA-GATCAATGCAAGC-GG-ACATTAACGAGGGTA-GAGAGAA-----CATT-CCATAGCAAGGGA--TG--GG--TTA-A--AA-TTTTA-G-ATT-AACATAAAGATTA-C--CATTC-------
gi|17 : AACAATATTGCCGATATAAACCCTTACA-A-T-TATCG-AGGAATAA--------------A--AATCATG-------T---GATTTTTTTTTT-----A-------TCAAA---CTA-CA---T-A----CT-GTATAT-GT-TATATAAATTT--TGCAGTT--AAATTCAAT-CGGGTCGAATAGTAAT---CA---TA------A--------TGAAT---AT-CATTATCCAAGTCGGATAATA--AACG-T-C-CA-accagtatagcaactactcttatgatt
gi|18 : aagagacgtcatcagcATG-GC-GACGTGA--AAACGTGGACGGCCTGCAG----------T-----------ACA------CAT---------------A-CAGT-AGGAC-CG-G-A--AAT-AGGGCC-GATAG----AACTACT-TTC-AGCAACGGA--AA--GGCAATT-C--AA-TTTTATGT-TC-AACATGGC-ATCA-CAT-------------TTCAGGACGA-AT--GC------G-GAA---ATCTCCGTGTTTCat
gi|19 : caAT-CGGATTAAAGA-TAAT---CAAGCTA------ATTTCCTGTGTAGCT--ATTTCATCTCTGTGTCGGATAATA--AATG-TGC-AA-T--TT---AGA--A-ATAT--TT-AT-G-ATTACAT-A-T-------------ATTTA-G--A----AAACAAAT-AC--G-AC-GGTGCGC--AAGCGTAGACGACCTGTAGG----CTGA-T---GGC-GG-AACA------CGCTCAGTC-ATAAAG-GA-AAGcaatattttttgtcccgtacttgcgcacatcta
gi|2 : AT-GCCG---TAT-TAATTAGATA-T-TATCGACAGAATAC--------------A--AATCATGCACTTTTT---G----------C-----AA------GCAAG---CTA-TA---T-T--AGTT-AT-TAC-TT-TATGCAAACCA--TGCCATT--TAACTCAGT-CGGATTAAAACGTAAA---CAAACTA------ATTTTCTATTTAGTT--ATTTCTTCTCCGAATCTGATAAAG--AACG-C-C-CC-T--TTTCGAAA-TA----T--TT-AT-G-ACCTTATGA-CGCCGCCCG--------TT-G--A---T---CAATT-ACGTG-------------AAGC-------GCCAGCAGG----TTGT-T---GGT-GG-GACA------CATTCAGGG-AGAAAATGA--AGT-CAAATGGG-A-A--AAC-AGTGCA-GATA-AAAT---CACT-TTG-GGTAATaga
gi|2 : atattttcctaatttacatgtatttaaaggtataaC-AAGATGAA-A--G-CGTCCCTC-------ATTTATAT--ATTT--GC-ATTA-G-AGA---ATC-CCG--------------T---GC-ATTGAATAGA-CT---------AGTACTCCTTTCATGCC----AAT----ATA--TA-ACTTATCAGCATT-TCA-----ataaaattgttacgcaaaaatgatcttaatacgagtacatactgtaagtgaaatcctcttctgctgcatattttacgcgcgtttgcgcacattcgccaagatgaaagcgtccctcatttatatatttgcattagagaatcccgtgcattgaatagactagtactcctttcatgccaatatataacttatcagcatttcaagatgcatcatactaactaactctgatctgatttacaatatagacaacata
gi|20 : atattttcctaatttacatgtatttaaaggtataaatgccgtattaattagatattatcgacagaatacaaatcatgcactttttgcaagcaagctatattagttattactttatgcaaaccatgccatttaactcagtcggattaaaacgtaaacaaactaattttctatttagttatttcttctccgaatctgataaagaacgccccttttcgaaatatttatgaccttatgacgccgcccgttgatcaattacgtgaagcgccagcaggttgttggtgggacacattcagggagaaaatgaagtcaaatgggaaaacagtgcagataaaatcactttgggtaatataaaattgttacgcaaaaatgatcttaatacgagtacatactgtaagtgaaatcctcttctgctgcatattttacgcgcgtttgcgcacattcgcA-----------CC----AAT----CAA--TG-ATTTGCCGAAATTGTAAGA---TAT--TTTCA-------TT-----T-TGAATTGTTTATAAAT--------C----TGGCATAATTTA-T---T--GCTCTGGTTTCCG--ACA--T---ACAAAAACACCGTTTTTTAAAACAG--GGCA-CACA-TACCTTagatgcatcatactaactaactctgatctgatttacaatatagacaacata
gi|21 : ttcaatagaccatgcaatgcttctttaaaAATTCGAT-CGAATCAAAAAGAAAT---CAAGCTA------ATATCC-----AA----ATG----CTGCG----GAATATTC--AACA-T-CTCA-T--TTTCAAAA-TA----T--AC-AC-G-ATCATATAG-C------CTCGG-AA---------A-GTTAACAA---ATATG-GC-GAAGCGA--
gi|22 : catatttattttcttcaaaac--AGTT-ATCCAC-TG-T-AGAAAATTA--TGCAATC--TAACTCAGT-CGGACTAAAATTTAAT---CAAGCTA------ATT---TATCTAATC--ACATGTTCCCTGAGTCGGATGGTG--AACGCC-C-CG-T--TT---CGA--A-AA-A--TG-AT-G-ATCACGTGA-CGT
gi|23 : A-CGTCATTC-------CTTCCTAA--ATAT--AC-ATTA-G-AAA---A--CCCGC-TTTCTCCT----T---GC-ACTGAGTgag
gi|24 : cagaaatcacaattcagtacgactacatcccaatcttctaaaaatatttatcccgcgcttgaacatatttaccataaCATTAG-GCCA---TAA-TTTTAGGATA-T----CGTGGGAATAATAATAATAAAAACAACCAAACATG-------T---G----------TTTTATA-------TCAAG---CTA-TA---T-A----------CAC-TT-TATGCAAATTA--TGCAATT--TAACTcccg
gi|25 : gttaatgctacatgGGACGGAACACAGGATCACTGT-T---GGT-GG-GACG------CATTCAGTG-ATAAAA-CA-CCCT-CAGAT-GG-A-A--AAC-AGTACA-G---GATA-AACCACT-TTG-AGCAATGGAC-TG--GA--GTT-A--AA-TTTGATGT
gi|26 : c--ATTTATTATCTGAGCTGGATAATG--AAGG-C-C-CAAT--TT---AAAATA----T--TA-AT-A-ATCACGTGG-CGta
gi|27 : ataccattgaacactttcaggctagaatattttttagcttaccctcagtttgtcgA-----CAT--T---T-------CT-----TGTTCATAGTTTAACACA--------CCAGCTGACAAAAC--ATA---CGAA--CTGCTTTTTA--ACA--ACGAACAACA-TTCTGTTC-----AATAC--TGCA-CATA-TA
gi|28 : A-ATAT--TC-AT-TTATCACAAGA-CGTTCCATGCAG-AATTTCAG--AA-GTAAATGATT-ACATG-GC-GACGTGA--AAGTGAGGAATACCTGTTGA----CTAT-T---TGT-GG-GACA------CATTCAGgttgtatttttaaaggtta
gi|29 : ttcaaCAAG---CTA-TA---C-ACAAGTC-ATACAC-TTAC-TGCAAATTA--TACAATT--CAACTTGAT-CAAATTCAAAAGTTAT---CAAGCTT------ATACCCTACTTA--C--ATGTA
gi|3 : cTA-T-TA-CAAAGGAATAA--------------A--AAGCATGAT-----T---G----------T-----GCTTTTACTCAAGACTCCAGTA---T------CT-ATGCAC-AT-TATGTGATTTAATTG-ATTT--TAATTTGAT-TGGATTAAA--GTAAT---CGAAATA------ATTTCGTATAAAGTCTGATGT---TTCAGAGCCAGAC-GTG--AAAG-C-C-CA-T--TT---CGA--A-AT-A--TC-ATCG-ATC-TGTGTTCTTTGC---TGATAATAAA-A--AA-G--AACAAAT-ACATG-GCCAATGTGA--AAGGCTGGATAGC-TGCGGG----CTTTAT---GGT-TG-GGCA-------AT-CAGTGGATACAA-GA-CAGT-CGGAA-AT-ATA--AAC-AGGGCCTAAGAGAA-----CACT-TTG-AGCAATGAA--GG--GA--G
gi|3 : ATC-ACTAT-AA-AT----GTCACTC-------CTTCATAAT-ATAT--GT-ATTT-T-AGA---ATCTCCCT-TTTCCTAT----T---GC-ATTGAATAGATTC---------AATA-----------CC----AGT----aagccacttttgagcaatgaaaggggagttaaaaattccaacgtttaaacataaacattctcgtacgagctacatactgtaacaatcgtcatctctcgtgaagcgttccgatatttatttttgtatgcttagcacatcactataaatgtcactccttcataatatatgtattttagaatctcccttttcctattgcattgaatagattcaataccagtaatcctttaataacagta
gi|30 : tattacaaaggaataaaaagcatgattgtgcttttactcaagactccagtatctatgcacattatgtgatttaattgattttaatttgattggattaaagtaatcgaaataatttcgtataaagtctgatgtttcagagccagacgtgaaagcccatttcgaaatatcatcgatctgtgttctttgctgataataaaaaagaacaaatacatggccaatgtgaaaggctggatagctgcgggctttatggttgggcaatcagtggatacaagacagtcggaaatataaacagggcctaagagaacactttgagcaatgaagggagaagccacttttgagcaatgaaaggggagttaaaaattccaacgtttaaacataaacattctcgtacgagctacatactgtaacaatcgtcatctctcgtgaagcgttccgatatttatttttgtatgcttagcac-T--TC-AT-G-ATCACGTGA-CGATACACGCGG-AATTTC-GA-AA-GTAAACA------ATG-GC-GACGTGA--AAGTGTGATGGGTCTGCGGaatcctttaataacagta
gi|31 : ttta-ATCTGTCGAAATTGTCAAATCGTAT--T---A-------AT-----T-TTCACAGTTAATCATA--------C----TAACAAATC--A-
gi|32 : CTG---TAA-TCTTTGAATA-T-TTCCGTAAAACTAA--------------A--TAGCGTT-------TT--A----------T-----A-------TTAAG---CTA-TATTGT-A--AGTC-ATAGAC-TT-T-tacggttttgcatgattcata
gi|33 : TTC-------CATCGTAA--AAAT--GC-AAAA-T-AAA---TTCATCGC-TTTCTCCT----T---AA-AATGAGTAAA-AG---------AGTA-----------Cataaat
gi|34 : AAGGTCTGCTTTTTA--AAAAATCGAACAAAT-TATTTTAT-----AATAT--TCCA-CATA-TACCTTTAtctt
gi|35 : TCATAA--ATATT-GC-ATTA-G-AAATAAATCACCAT-TTTCTCCT----T---AA-AATGAGTAGA-CC---------AGT
gi|36 : AT---CAAGCTA------ATTTCCTATTTAATT--ATGTATTCTCTTAATGGGTTAGTG--
gi|37 : --GC-ATTA-G-AGA---ATCCCCGT-ATTCTCCT----T---ACTATTGAGTAGA-TC---------AGTA-----------C
gi|38 : CTTTTTA--ACA--TCGAACAAAA-TACTGTTT-----GATAC--GGCA-CATA-CAt
gi|39 : TTTTTA--GCA--TCGAACAAAT-TACTGTTT-----AATAA--GGTA-CATA-TACCttt
gi|4 : TTTT--ATC-T-TACCGTAGGAATAA--------------A--AGGCATG-------T---G----------T-----A-------T--------TA-TA---T-C--AATTCATAAA-------TGCAAATTA--CGCAATT--TAACTCAAT-TAAATCAAAGAGTAAT---CAATCCA------ATTTCCTATTTAACT--TTGTA-TCTTCGAGCCGGATAGGG--Ag
gi|4 : TTTATGA--ATATAAGC-ATTA-G-AAA---ATCACCAT-TCTCCCAT----T---AC-ATTTAGTAGA-CC---------AATACTCCTTAATG-CC----CGT----ATA--TG-ATTTGTCGAAATTGTCA-----CAT--C---ATAATATTTT-----T-TTCATCGTTTATCATT--------C----TGACAAAAT----A---CACGGCCTGGTTTTT---ACA--TCAAACAAAA-CGCTGTTT-----AATAA--GGCG-CACA-TGCctgaagcggaattcaaagaaaagtgtaaatgaccttcagggtgttgacgggactcagttaaccaataggataaattagagcattggttcgtatttaacgtgaactcactattcagtatgactgccgatatactgtaaataaaatccttatatcctttgatgattgtaataatatttttctcacgtgcttgcgtacatccaccataagtcttaaagagtttatgaatataagcattagaaaatcaccattctcccattacatttagtagaccaatactccttaatgcccgtatatgatttgtcgaaattgtcacatcataatatttttttcatcgtttatcattctgacaaaatacacggcctggtttttacatcaaacaaaacgctgtttaataaggcgcacatgca
gi|40 : ttttatcttaccgtaggaataaaaggcatgtgtattatatcaattcataaatgcaaattacgcaatttaactcaattaaatcaaagagtaatcaatccaatttcctatttaactttgtatcttcgagccggatagggactgaagcggaattcaaagaaaagtgtaaatgaccttcagggtgttgacgggactcagttaaccaataggataaattagagcattggttcgtatttaacgtgaactcactattcagtatgactgccgatatactgtaaataaaatccttatatcctttgatgattgtaataatatttttctcacgtgcttgcgtacatccaccataagtcttaaagagTTA--GCA--TCAAACAAAA-TACTGTTT-----AATAC--GGCACCATA-TACa
gi|5 : ---TAA-TATTCTGATA-T-TATCGTAGGGA--A--------------A--AAACAT-----------------------T-----A-------CT--T---TTA-TA---TCA--AGCT-ATATAT-TT-T-T-----TTA--TTTA-TTAGTAGTTATATGCAAAT---AAAGTAAT---CAAACTACATGTAATTTCCTATTTAATA--ATGTATTCTCCGAGTCGAATACTG--AACG-CAC-CA-T--TT---C---TA-A-------------ATCACATGG-CGTTGCACGCG------------------AACAATTTACTTG-AC-AACGTGA--AAGCGTGTATGGCCTGCTGG----CTGT-T---GGC-AG-GACATACCGGTATTCAGTG-ATAAAA-GA-CAGT-GAGCC-AG-A-C--AAC-AGGGTA-GAGAG----AATCACT-TTG-AGCAATGGA--AA--GG---------------C---TATC-AA-ATGAA-AT---CGCCATTCAGTACGACTACATAA--TTAT--ACTGTAA-GCGAA---ATCCCCGT-CTCCt
gi|5 : -ATCAATGCCATTC-------CTTCATAA--ATAA--GC-ATAA-G-AAA---TTTACCGT-GTTCTCCT----T---AC-ATTGAGTAGA-CC---------AGTA-----------Cattggtgtttgtaataattttgctcgcgcttgcgcatatccaccatcaatgccattccttcataaataagcataagaaatttaccgtgttctccttacattgagtagaccagtactc
gi|6 : taatattctgatattatcgtagggaaaaaacattacttttatatcaagctatatatttttttatttattagtagttatatgcaaataaagtaatcaaactacatgtaatttcctatttaataatgtattctccgagtcgaatactgaacgcaccatttctaaatcacatggcgttgcacgcgaacaatttacttgacaacgtgaaagcgtgtatggcctgctggctgttggcaggacataccggtattcagtgataaaagacagtgagccagacaacagggtagagagaatcactttgagcaatggaaaggctatcaaatgaaatcgccattcagtacgactacataattatactgtaagcgaaatccccgtctccattggtgtttgtaataattttgctcgcgcttgcgcatatccaccACGTGA--AAGAGTGGGTGGCATGCTTG----CTGT-TTGTGGCTGG-GACA------CATTCAGCG-ATAAAA-tc
gi|6 : tgacatGCAA-GGA--AGTTGA--ATT-ATAAA-TTTCGTAT-TC-AACTTGAA-AT---CGCCATTtatgcactgcaaggaagttgaattataaatttcgtattcaacttgaaatcgccatttggtacaactacatgttgtaaacaaatattcctcatcgtccatgatgtttcaaaaaatatttttcttgcgcacttgtacacatccaccataaacattcatttttcattattatgcaatagaaaatcgctgttttcccctaaatgtaacattgagtagacctatcccttaaatacctgcataatttgtcaaaattgtcagatcataatatttttcatggtctatcagatacactagctgacaaaattctaggtcttctttttaacacatcaaacaaaattccatttaatactatacatatatacttttaa
gi|6 : tgacatacgtgaaagagtgggtggcatgcttgctgtttgtggctgggacacattcagcgataaaatatgcactC-ACCATAAA---CA-T-TCATTT--------TTCATTA--TTAT--GC-AATA-G-AAA---ATCGCTGT-TTTCCCCTAAA-TGTAAC-ATTGAGTAGA-CCTATCCCTTAAATA-----------CC------T----GCA--TA-ATTTGTCAAAATTGTCAGAT--CATAAT---A-------TT-----T-TTCATGGTCTATCAGATACACTAGC----TGACAAAAT----T---CTAGGTCTTCTTTTTAACACA--TCAAACAAAA-TTCCATTT-----AATACTATACA-TATA-TACTTTTAtggtacaactacatgttgtaaacaaatattcctcatcgtccatgatgtttcaaaaaatatttttcttgcgcacttgtacacatccaccataaacattcatttttcattattatgcaatagaaaatcgctgttttcccctaaatgtaacattgagtagacctatcccttaaatacctgcataatttgtcaaaattgtcagatcataatatttttcatggtctatcagatacactagctgacaaaattctaggtcttctttttaacacatcaaacaaaattccatttaatactatacatatatacttttaa
gi|7 : tgacatacgtgaaagagtgggtggcatgcttgctgtttgtggctgggacacattcagcgataaaatatgcactgcaaggaagttgaattataaatttcgtattcaacttgaaatcgccatttggtacaactacatgttgtaaacaaatattcctcatcgtccatgatgtttcaaaaaatatttttcttgcgcacttgtacacatc--TC-GT-G-ACCACGTGA-TGTTGCACGCGG-AAT----------------AATT-ACATG-GC-AACGTGC--AAGCATGGACGACCTGCAGA----ATGT-T---AGC-GG-GAGA------CATTC--------AAA-G--------AGAC-GG-A-A--AAC-AGGG-----TAAAGATATCCACT-TTG-AGCAATGGA--AG--GG--ATT----------------TT-AACATGTA-ATCA-C--CATTa
gi|7 : caaattcgaaatag-AAA---A--ACCGG-TTTCGTCC----A---AG-ATTTAATAGA-CG---------AGTA-----------CT----CAT----TTA--AA-AACTGTCAA----GTCA-----TGC--T---A-------TT-----A-ATGATTGTTTTTCATA--------C----TGACAAAAC--ACA---CAAGGT--ACTTTC-A--GCG--TCGAACAAAA-TACTGTTTTATC-AATAC--TTCA-CGTA-TACCTTTtagtacgactacatgtatatactgtaaacgaaaccctcatctcccatgatgtttctaatatttttctcgcgcgtatgcgcacgttcaccgtaaatgtaaaaaccggtttcgtccaagatttaatagacgagtactcatttaaaaactgtcaagtcatgctattaatgattgtttttcatactgacaaaacacacaaggtactttcagcgtcgaacaaaatactgttttatcaatacttcacgtatacctttg
gi|8 : caaattcgaaatagtcgtgaccacgtgatgttgcacgcggaataattacatggcaacgtgcaagcatggacgacctgcagaatgttagcgggagacattcaaagagacggaaaacagggtaaagatatccactttgagcaatggaagggattttaacatgtaatcaccatttagtacgactacatgtatatactgtaaacgaaaccctcatctcccatgatgtttctaatatttttctcgcgcgtatgcgcacgttcaccgtaaatgtATAT-GCTG---CAA-ATTTTTACTA-T-GATCGTAGGAATAA--------------A--AAGCATG-------T---G----------T-----T-------TCA------TA-T----T-A--AGCT-ATACAC-TT-TCTGCAAATTA--TACAATT--GAACTCAAT-AGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--ATGTATTTTCTGAGTTGGATAGTG--AACACC-C-CA-T--TC---AGA--A-ATAT--TC-AT-A-ATCACATGA-CATTGCA-----------C-G--AA-GTAAACAATT-CCATG-GC-GACGTGA--CGCTGCAGATGACCTGTTGG----CTGT-T---GAT-GG-GCCA------CATCCAGCG-ATATAA-GA-CAGT-CAGAC-GG-A-A--AAC-AGGG---GACAGAG--AACCACG-CTG-AGCAAGAGAAGGG--GG--GTTCA--AA-TTTCATGT-TC-AGCATAAA-ATCA-C--CATTC-------g
gi|9 : agagctatcatctgtcaaagctaactgtatGTGA-CGTTGCACGCGG-AA-----------GTGAACAATT-ACACG-GC-GACGTGA-----------CGACATGCAGG----CTGT-T---TGT-GG-TACA------AATTCAGCG-ATAAAA-GA-CAAT-CAGAT-----------C--------GAT-TAAAT-ACCACT-TTG-AGAAATGGAAGGG--GG--GTTAA--AA-CTTCATG-GTT-AACATGAT-ACTA-C--CATTC-------ag
gi|9 : TCATCCATC-CAC-TGTA-A--A-CCTCATTC-------CTTCA-----------------A-G-ATA---A---CGGC-TTTCCCCT----T---AT-ATCGAGTAGA-CT------------------------CC----TGT----ATA--TA-ATTATTCGAAATTGTCA-----AAT--C---A-------TT-----aatacgactacatgctataaaacgaaattccatttttcattatgtttttaattttaaaaaattatcgcgctcttgcgctcatccatccactgtaaacctcattccttcaagataacggctttccccttatatcgagtagactcctgtatataattattcgaaattgtcaaatcattaa
Alignments
lowQualScore : 22222222222222 55555555555555555555555555555555555555555555 111111111 1 111 4444444444444 333333333333333333 2222222222222 111 1111 11 1111111 1111111 44444444444444444444444444444444444444444 2222222222222222222222 11111 222222222222222 333333333 11111
lowQualScore : 6 777 4 3 3 3 0 0 11111111111111 55 2 33333333333333333333333333333333333333333333 3 555 222222222 1 55 3 5 0 44 44 1 3 444 777777 888 5 11 0 2 33 888 2 2 44 9999999999999 33 2 2 2 2 33 1111 444444444444444444 2 2 1 2 2 33 4 5555 2 444 2 2 777777 0 777 2 22 33 3 3 6 44 3 6666666666666 3 3 1 222 55 999 4444 4 55 3 2 3333333 0000000 77 66 2 2 2 444 0 4 2 0 6666 555 555 3 3 11111111111111111111111111111111111111111 66 4 0 5 6666666666666666666666 11111 5 1 777777777777777 333333333 22 55 55 3 66666 555 3 3
lowQualScore : . ... . . . . . . .............. .. . ............................................ . ... ......... . .. . . . .. .. . . ... ...... ... . .. . . .. ... . . .. ............. .. . . . . .. .... .................. . . . . . .. . .... . ... . . ...... . ... . .. .. . . . .. . ............. . . . ... .. ... .... . .. . . ....... ....... .. .. . . . ... . . . . .... ... ... . . ......................................... .. . . . ...................... ..... . . ............... ......... .. .. .. . ..... ... . .
lowQualScore : 7 888 4 2 6 6 4 2 44444444444444 00 0 11111111111111111111111111111111111111111111 3 888 000000000 5 22 1 4 2 66 66 4 1 777 777777 888 1 99 2 0 77 111 9 9 22 8888888888888 44 5 5 5 4 22 6666 666666666666666666 7 7 2 5 5 22 4 3333 5 444 5 5 222222 2 444 7 99 55 1 1 2 22 1 1111111111111 3 3 5 999 00 111 2222 0 88 1 9 5555555 0000000 99 88 9 9 7 777 8 5 5 4 5555 444 444 1 3 88888888888888888888888888888888888888888 11 0 5 8 9999999999999999999999 11111 0 0 111111111111111 888888888 55 00 00 6 88888 555 6 6
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATAT-GCCG---TAA-TTTTTGGATA-T-TATCGTAGGAATAA--------------A--AAGCATG-------T---G----------T-----A-------TCAAG---CTA-TA---T-A--AGCT-ATACAC-TT-T-TGCAAATTA--TGCAATT--TAACTCGAT-CGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--ATGTATTCTCCGAGTCGGATAGTG--AACG-C-C-CA-T--TT---AGA-TA-AT-T--TC-AT-G-ATCACGTGA-CGTTGCACGCGG-AATTTC-G--AA-GTAAACAATT-ACATG-GC-GACGTGA--AAGCGTGGACGGCCTGCGGG----CTGT-T---GGC-GG-GACA------CATTCAGCG-ATAAAA-GA-CAGT-CAGAC-GG-A-A--AAC-AGGGCA-GANAGAAATAACCACT-TTG-AGCAATGGA--GG--GG--GTT-A--AA-TTTCATGTATC-AACATGAA-ATCA-CGTCATTC-------CTTCATAA--ATAT--GC-ATTA-G-AAA---ATCNCCGT-TTTCCCC----T---T---AC-ATTGAGTAGA-CC---------AGTA-----------C----C---AGT----GTA--TA-ATTTGTCGAAATTGTCA-----CAT--T---A-------TT-----T-TTCATNGTTTATCANA--------C----TGACAAAAC--A-A---CAAGGTCTGCTTTTTA--ACA--TCGAACAAAA-TACTGTTT-----AATAC--GGCA-CATA-TACCTTTA
Reference ( family-3717 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATAT-GCCG---TAA-TTTTTGGATA-T-TATCGTAGGAATAA--------------A--AAGCATG-------T---G----------T-----A-------TCAAG---CTA-TA---T-A--AGCT-ATACAC-TT-T-TGCAAATTA--TGCAATT--TAACTCGAT-CGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--ATGTATTCTCCGAGTCGGATAGTG--AACG-C-C-CA-T--TT---AGA-TA-AT-T--TC-AT-G-ATCACGTGA-CGTTGCACGCGG-AATTTC-G--AA-GTAAACAATT-ACATG-GC-GACGTGA--AAGCGTGGACGGCCTGCGGG----CTGT-T---GGC-GG-GACA------CATTCAGCG-ATAAAA-GA-CAGT-CAGAC-GG-A-A--AAC-AGGGCA-GANAGAAATAACCACT-TTG-AGCAATGGA--GG--GG--GTT-A--AA-TTTCATGTATC-AACATGAA-ATCA-CGTCATTC-------CTTCATAA--ATAT--GC-ATTA-G-AAA---ATCNCCGT-TTTCCCC----T---T---AC-ATTGAGTAGA-CC---------AGTA-----------C----C---AGT----GTA--TA-ATTTGTCGAAATTGTCA-----CAT--T---A-------TT-----T-TTCATNGTTTATCANA--------C----TGACAAAAC--A-A---CAAGGTCTGCTTTTTA--ACA--TCGAACAAAA-TACTGTTT-----AATAC--GGCA-CATA-TACCTTTA
gi|1 : AATAATAT-GCCG---TAA-TTTTTGGATA-T-TATCATAGGAATAA--------------A--GAGCAAG-----------G----------A-----A-------TCAAG---CTA-TA---T-G--AGTT-ACACACGTT-T-TGCGAATTA--TGAAATT--TAATTCAAT-AGGATTGAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--GTGTATTCGATGAGTCGGATAGTATCCATG-A-C-CA-GAGTT---GGA-TA-GT-T--TCCAT-G-ACCACGTGA-CAATGCACGCGG-AACTTC-G--AA-GTAAAGAATT-GCATG-GC-AACGTGA--AAATGTGGACGGCCTGGGGG----CTGT-T---AGT-GG-GACA------CATACAACG-ATAAAA-GA-CAGT-CAGGT-GG-A-A--AAC-AGGGTA-GAAAAAAATAACCAAA-ATG-AGCAATGGA--GG--GA--ATT-A--AA-TTTGATGTATA-AACATGAA-ATCA-CGTCATTC-------CTTCATAA--ATAT--GC-ATAA-T-AAA---ATCACCAT-TTTCTCC----T---T---AC-ATTGACTAGA-TC---------AGTA-----------T----C---AGT----GTA--TA-ATGTGTCAA----GTTA-----CAT--T---A-------TT-----T-TTCATCGTTTATCAAA--------T----CGACAAAAA--A-AAACCAAGGTCTGCTTTTTA--ACA--TTGAACAAAT-TACTGTTT-----AATAC--GATG-CATA-TACCTTTA
gi|10 : gtgtatgataagcaaagtaaatgaacatttt---TAA-TTTTTGGGTA-T-CATCGTAGGAATAA--------------A--AAGCATG-------TTTTA----------T-----A-------TCAAG---CTA-TG---T-A--AG----------TT-T-TATAAACTC--TGCAAAT--TAAGTCAAT-AAGATTAAAAAGTAAT---CAAGCTG---------------TTAAT---AT-TATTCTCTTAATCGGATAGTG--AACG-CTC-CA-T--TTCG-AAA-TACATGTAGTC-AT-G-ATCACTTGA-CGTTGCACGCGT-AATTTC-G--AAAGTAAACA---------------C-TAA--AAGTGGGGGCAGTTCATAGG----TTGT-T---GAC-AG-GACA------TATTCA-------AAA-GA-TAG-----AC-GG-A-A--AAC-AG-----GATAGAGATAACCATTATTG-AGCAATGGA--
gi|11 : taACGTC-C-CA-T--TTCA-AAA-TA----T--CC-GT-A-ATCATGTGA-TGTTGCACGTGG-AATTTC-GAAAA-GTACACCATT-ACATG-GC-GACGTGATTGAGCGTGGACGACCTGTGGA----ATGA-T---GGC-AG-A------------TC----------A-GA-CCAT-CAGAT-GG-G-A--AAC-AGGACG-GAGAG----AACCATT-TTG-AG---------GG--GA--ATT-A--AAGTTTCATG-ATCAAATATGAA-ATCA-C--CATTa
gi|11 : A-TGTCATTC-------CTTCATAA--ATAT--GC-ATTACA-AAA---ATCTCCAT-TTtggatcgaatatattttaacctcccagtatgtgatatatttttttctcacccaagtgcgaatgtcattccttcataaatatgcattacaaaaatctccattt
gi|12 : acgtcccatttcaaaatatccgtaatcatgtgatgttgcacgtggaatttcgaaaagtacaccattacatggcgacgtgattgagcgtggacgacctgtggaatgatggcagatcagaccatcagatgggaaacaggacggagagaaccattttgaggggaattaaagtttcatgatcaaatatgaaatcaccatttggatcgaatatattttaacctcccagtatgtgatatatttttttctcacccaagtgcga-TTTCTCC----T---T---AA-ATTGAGTAGA-AT---------AGTATT---------C----CTTTAATAACCGTAATTA-ATTTGTCCATACTGTCA-----AAT--C---A-------TTCTACCT-TTCACAGTTAAT------------------------------A---CATGGTCAGCTTTTAC--ACA--TCTATCAAAA-TACTGTTT-----AATGC--AGTA-CATATTACC
gi|13 : attcagtatgactacatactgtaaaattctcatttcccatgatatttttattaataaatttttgtgtgtgcttacacacatctaccattcatatcattcctataTAT--GC-AATA-G-AAA----TCGCTGT-TTTCCCCTATAT---T---AC-ACT--GTAGA-CCTACCCTTA-ATTA-----------CCTGAC---ATT----GTA--TATATTTGTCAAA
gi|14 : cgtattcacttgaaatcgccattgtacaactacatagcttgctaaacaattattcctcatcgtccatcggatgtttaaaacaattgtattttcttgcgcacttgtacacattcaccataaacaatgtttaaatttttttcgaatttgttT-GACA---TAA-TTGTTGGATAGTATATTGTAGGAATGA--------------A--AA---TG-------T---G----------T-----T-------T--------TA-TA---TCA--AGCT-ATACA-------------------GCAA-------CTTGAT-TGGTTAAAAAAGTAATATATGAGATA------ATTTCCCATTTAATC--A--TATTCTTCGAGTCGGACA--G--AATGCC-C-CA-T--TTTC-AAA-TA----T--TA-AT-G-ATCACTTGA-tgtataataa
gi|15 : agaattgatatatttttaaaagttatttatgtcGGATTAAAGA-TAAT---CAAGCTA------ATTTCCCGTGTAACT--ATTTCATCTCTGTGTCGGATAATA--AACG-CAC-AA-T--TT---AGA--A-ATAT--TT-AT-G-ATTACAT-A-T-------------ATTTA-G--A----AAACAAAT-AC--G-AC-GGTGCGC--AAGCGGAGACGACCTGCAGG----CTGA-G---GGC-GG-AACA------CGCTCAGTC-ATAAAG-GA-AAG---AGAC-GGTA-A--GAC-AGGGTA-TAGAGA
gi|16 : AACAATT-ACAAGAGC-AACATGA--AAGCATGGATTGTCCGCAGA----CTGT-T---GGT-GGCAACA------CATTATGTG-ACAACA-GATCAATGCAAGC-GG-ACATTAACGAGGGTA-GAGAGAA-----CATT-CCATAGCAAGGGA--TG--GG--TTA-A--AA-TTTTA-G-ATT-AACATAAAGATTA-C--CATTC-------
gi|17 : AACAATATTGCCGATATAAACCCTTACA-A-T-TATCG-AGGAATAA--------------A--AATCATG-------T---GATTTTTTTTTT-----A-------TCAAA---CTA-CA---T-A----CT-GTATAT-GT-TATATAAATTT--TGCAGTT--AAATTCAAT-CGGGTCGAATAGTAAT---CA---TA------A--------TGAAT---AT-CATTATCCAAGTCGGATAATA--AACG-T-C-CA-accagtatagcaactactcttatgatt
gi|18 : aagagacgtcatcagcATG-GC-GACGTGA--AAACGTGGACGGCCTGCAG----------T-----------ACA------CAT---------------A-CAGT-AGGAC-CG-G-A--AAT-AGGGCC-GATAG----AACTACT-TTC-AGCAACGGA--AA--GGCAATT-C--AA-TTTTATGT-TC-AACATGGC-ATCA-CAT-------------TTCAGGACGA-AT--GC------G-GAA---ATCTCCGTGTTTCCat
gi|19 : caAT-CGGATTAAAGA-TAAT---CAAGCTA------ATTTCCTGTGTAGCT--ATTTCATCTCTGTGTCGGATAATA--AATG-TGC-AA-T--TT---AGA--A-ATAT--TT-AT-G-ATTACAT-A-T-------------ATTTA-G--A----AAACAAAT-AC--G-AC-GGTGCGC--AAGCGTAGACGACCTGTAGG----CTGA-T---GGC-GG-AACA------CGCTCAGTC-ATAAAG-GA-AAGaatattttttgtcccgtacttgcgcacatcta
gi|2 : AT-GCCG---TAT-TAATTAGATA-T-TATCGACAGAATAC--------------A--AATCATGCACTTTTT---G----------C-----AA------GCAAG---CTA-TA---T-T--AGTT-AT-TAC-TT-TATGCAAACCA--TGCCATT--TAACTCAGT-CGGATTAAAACGTAAA---CAAACTA------ATTTTCTATTTAGTT--ATTTCTTCTCCGAATCTGATAAAG--AACG-C-C-CC-T--TTTCGAAA-TA----T--TT-AT-G-ACCTTATGA-CGCCGCCCG--------TT-G--A---T---CAATT-ACGTG-------------AAGC-------GCCAGCAGG----TTGT-T---GGT-GG-GACA------CATTCAGGG-AGAAAATGA--AGT-CAAATGGG-A-A--AAC-AGTGCA-GATA-AAAT---CACT-TTG-GGTAATaga
gi|2 : atattttcctaatttacatgtatttaaaggtataaC-AAGATGAA-A--G-CGTCCCTC-------ATTTATAT--ATTT--GC-ATTA-G-AGA---ATC-CCG-----------------T---GC-ATTGAATAGA-CT---------AGTACTCCTTTCATGC----C---AAT----ATA--TA-ACTTATCAGCATT-TCA-----ataaaattgttacgcaaaaatgatcttaatacgagtacatactgtaagtgaaatcctcttctgctgcatattttacgcgcgtttgcgcacattcgccaagatgaaagcgtccctcatttatatatttgcattagagaatcccgtgcattgaatagactagtactcctttcatgccaatatataacttatcagcatttcaagatgcatcatactaactaactctgatctgatttacaatatagacaacata
gi|20 : atattttcctaatttacatgtatttaaaggtataaatgccgtattaattagatattatcgacagaatacaaatcatgcactttttgcaagcaagctatattagttattactttatgcaaaccatgccatttaactcagtcggattaaaacgtaaacaaactaattttctatttagttatttcttctccgaatctgataaagaacgccccttttcgaaatatttatgaccttatgacgccgcccgttgatcaattacgtgaagcgccagcaggttgttggtgggacacattcagggagaaaatgaagtcaaatgggaaaacagtgcagataaaatcactttgggtaatataaaattgttacgcaaaaatgatcttaatacgagtacatactgtaagtgaaatcctcttctgctgcatattttacgcgcgtttgcgcacattcgcA-----------C----C---AAT----CAA--TG-ATTTGCCGAAATTGTAAGA---TAT--TTTCA-------TT-----T-TGAATTGTTTATAAAT--------C----TGGCATAATTTA-T---T--GCTCTGGTTTCCG--ACA--T---ACAAAAACACCGTTTTTTAAAACAG--GGCA-CACA-TACCTTagatgcatcatactaactaactctgatctgatttacaatatagacaacata
gi|21 : ttcaatagaccatgcaatgcttctttaaaAATTCGAT-CGAATCAAAAAGAAAT---CAAGCTA------ATATCC-----AA----ATG----CTGCG----GAATATTC--AACA-T-CTCA-T--TTTCAAAA-TA----T--AC-AC-G-ATCATATAG-C------CTCGG-AA---------A-GTTAACAA---ATATG-GC-GAAGCGA--
gi|22 : catatttattttcttcaaaac--AGTT-ATCCAC-TG-T-AGAAAATTA--TGCAATC--TAACTCAGT-CGGACTAAAATTTAAT---CAAGCTA------ATT---TATCTAATC--ACATGTTCCCTGAGTCGGATGGTG--AACGCC-C-CG-T--TT---CGA--A-AA-A--TG-AT-G-ATCACGTGA-CGT
gi|23 : A-CGTCATTC-------CTTCCTAA--ATAT--AC-ATTA-G-AAA---A--CCCGC-TTTCTCC----T---T---GC-ACTGAGTgag
gi|24 : cagaaatcacaattcagtacgactacatcccaatcttctaaaaatatttatcccgcgcttgaacatatttaccataaCATTAG-GCCA---TAA-TTTTAGGATA-T----CGTGGGAATAATAATAATAAAAACAACCAAACATG-------T---G----------TTTTATA-------TCAAG---CTA-TA---T-A----------CAC-TT-TATGCAAATTA--TGCAATT--TAACTcccg
gi|25 : gttaatgctacatgGGACGGAACACAGGATCACTGT-T---GGT-GG-GACG------CATTCAGTG-ATAAAA-CA-CCCT-CAGAT-GG-A-A--AAC-AGTACA-G---GATA-AACCACT-TTG-AGCAATGGAC-TG--GA--GTT-A--AA-TTTGATGT
gi|26 : c--ATTTATTATCTGAGCTGGATAATG--AAGG-C-C-CAAT--TT---AAAATA----T--TA-AT-A-ATCACGTGG-CGta
gi|27 : ataccattgaacactttcaggctagaatattttttagcttaccctcagtttgtcgA-----CAT--T---T-------CT-----TGTTCATAGTTTAACACA--------CCAGCTGACAAAAC--ATA---CGAA--CTGCTTTTTA--ACA--ACGAACAACA-TTCTGTTC-----AATAC--TGCA-CATA-TA
gi|28 : A-ATAT--TC-AT-TTATCACAAGA-CGTTCCATGCAG-AATTTCAG--AA-GTAAATGATT-ACATG-GC-GACGTGA--AAGTGAGGAATACCTGTTGA----CTAT-T---TGT-GG-GACA------CATTCAGgttgtatttttaaaggtta
gi|29 : ttcaaCAAG---CTA-TA---C-ACAAGTC-ATACAC-TTAC-TGCAAATTA--TACAATT--CAACTTGAT-CAAATTCAAAAGTTAT---CAAGCTT------ATACCCTACTTA--C--ATGTA
gi|3 : cTA-T-TA-CAAAGGAATAA--------------A--AAGCATGAT-----T---G----------T-----GCTTTTACTCAAGACTCCAGTA---T------CT-ATGCAC-AT-TATGTGATTTAATTG-ATTT--TAATTTGAT-TGGATTAAA--GTAAT---CGAAATA------ATTTCGTATAAAGTCTGATGT---TTCAGAGCCAGAC-GTG--AAAG-C-C-CA-T--TT---CGA--A-AT-A--TC-ATCG-ATC-TGTGTTCTTTGC---TGATAATAAA-A--AA-G--AACAAAT-ACATG-GCCAATGTGA--AAGGCTGGATAGC-TGCGGG----CTTTAT---GGT-TG-GGCA-------AT-CAGTGGATACAA-GA-CAGT-CGGAA-AT-ATA--AAC-AGGGCCTAAGAGAA-----CACT-TTG-AGCAATGAA--GG--GA--G
gi|3 : ATC-ACTAT-AA-AT----GTCACTC-------CTTCATAAT-ATAT--GT-ATTT-T-AGA---ATCTCCCT-TTTCCTA----T---T---GC-ATTGAATAGATTC---------AATA-----------C----C---AGT----aagccacttttgagcaatgaaaggggagttaaaaattccaacgtttaaacataaacattctcgtacgagctacatactgtaacaatcgtcatctctcgtgaagcgttccgatatttatttttgtatgcttagcacatcactataaatgtcactccttcataatatatgtattttagaatctcccttttcctattgcattgaatagattcaataccagtaatcctttaataacagta
gi|30 : tattacaaaggaataaaaagcatgattgtgcttttactcaagactccagtatctatgcacattatgtgatttaattgattttaatttgattggattaaagtaatcgaaataatttcgtataaagtctgatgtttcagagccagacgtgaaagcccatttcgaaatatcatcgatctgtgttctttgctgataataaaaaagaacaaatacatggccaatgtgaaaggctggatagctgcgggctttatggttgggcaatcagtggatacaagacagtcggaaatataaacagggcctaagagaacactttgagcaatgaagggagaagccacttttgagcaatgaaaggggagttaaaaattccaacgtttaaacataaacattctcgtacgagctacatactgtaacaatcgtcatctctcgtgaagcgttccgatatttatttttgtatgcttagcac-T--TC-AT-G-ATCACGTGA-CGATACACGCGG-AATTTC-GA-AA-GTAAACA------ATG-GC-GACGTGA--AAGTGTGATGGGTCTGCGGaatcctttaataacagta
gi|31 : ttta-ATCTGTCGAAATTGTCAAATCGTAT--T---A-------AT-----T-TTCACAGTTAATCATA--------C----TAACAAATC--A-
gi|32 : CTG---TAA-TCTTTGAATA-T-TTCCGTAAAACTAA--------------A--TAGCGTT-------TT--A----------T-----A-------TTAAG---CTA-TATTGT-A--AGTC-ATAGAC-TT-T-tacggttttgcatgattcata
gi|34 : AAGGTCTGCTTTTTA--AAAAATCGAACAAAT-TATTTTAT-----AATAT--TCCA-CATA-TACCTTTAataaat
gi|35 : TCATAA--ATATT-GC-ATTA-G-AAATAAATCACCAT-TTTCTCC----T---T---AA-AATGAGTAGA-CC---------AGT
gi|36 : AT---CAAGCTA------ATTTCCTATTTAATT--ATGTATTCTCTTAATGGGTTAGTG--
gi|37 : --GC-ATTA-G-AGA---ATCCCCGT-ATTCTCC----T---T---ACTATTGAGTAGA-TC---------AGTA-----------C----
gi|38 : CTTTTTA--ACA--TCGAACAAAA-TACTGTTT-----GATAC--GGCA-CATA-CAt
gi|39 : TTTTTA--GCA--TCGAACAAAT-TACTGTTT-----AATAA--GGTA-CATA-TACCttt
gi|4 : TTTT--ATC-T-TACCGTAGGAATAA--------------A--AGGCATG-------T---G----------T-----A-------T--------TA-TA---T-C--AATTCATAAA-------TGCAAATTA--CGCAATT--TAACTCAAT-TAAATCAAAGAGTAAT---CAATCCA------ATTTCCTATTTAACT--TTGTA-TCTTCGAGCCGGATAGGG--Ag
gi|4 : TTTATGA--ATATAAGC-ATTA-G-AAA---ATCACCAT-TCTCCCA----T---T---AC-ATTTAGTAGA-CC---------AATACTCCTTAATG-C----C---CGT----ATA--TG-ATTTGTCGAAATTGTCA-----CAT--C---ATAATATTTT-----T-TTCATCGTTTATCATT--------C----TGACAAAAT----A---CACGGCCTGGTTTTT---ACA--TCAAACAAAA-CGCTGTTT-----AATAA--GGCG-CACA-TGCctgaagcggaattcaaagaaaagtgtaaatgaccttcagggtgttgacgggactcagttaaccaataggataaattagagcattggttcgtatttaacgtgaactcactattcagtatgactgccgatatactgtaaataaaatccttatatcctttgatgattgtaataatatttttctcacgtgcttgcgtacatccaccataagtcttaaagagtttatgaatataagcattagaaaatcaccattctcccattacatttagtagaccaatactccttaatgcccgtatatgatttgtcgaaattgtcacatcataatatttttttcatcgtttatcattctgacaaaatacacggcctggtttttacatcaaacaaaacgctgtttaataaggcgcacatgca
gi|40 : ttttatcttaccgtaggaataaaaggcatgtgtattatatcaattcataaatgcaaattacgcaatttaactcaattaaatcaaagagtaatcaatccaatttcctatttaactttgtatcttcgagccggatagggactgaagcggaattcaaagaaaagtgtaaatgaccttcagggtgttgacgggactcagttaaccaataggataaattagagcattggttcgtatttaacgtgaactcactattcagtatgactgccgatatactgtaaataaaatccttatatcctttgatgattgtaataatatttttctcacgtgcttgcgtacatccaccataagtcttaaagagTTA--GCA--TCAAACAAAA-TACTGTTT-----AATAC--GGCACCATA-TACa
gi|5 : ---TAA-TATTCTGATA-T-TATCGTAGGGA--A--------------A--AAACAT-----------------------T-----A-------CT--T---TTA-TA---TCA--AGCT-ATATAT-TT-T-T-----TTA--TTTA-TTAGTAGTTATATGCAAAT---AAAGTAAT---CAAACTACATGTAATTTCCTATTTAATA--ATGTATTCTCCGAGTCGAATACTG--AACG-CAC-CA-T--TT---C---TA-A-------------ATCACATGG-CGTTGCACGCG------------------AACAATTTACTTG-AC-AACGTGA--AAGCGTGTATGGCCTGCTGG----CTGT-T---GGC-AG-GACATACCGGTATTCAGTG-ATAAAA-GA-CAGT-GAGCC-AG-A-C--AAC-AGGGTA-GAGAG----AATCACT-TTG-AGCAATGGA--AA--GG---------------C---TATC-AA-ATGAA-AT---CGCCATTCAGTACGACTACATAA--TTAT--ACTGTAA-GCGAA---ATCCCCGT-CTCCt
gi|5 : -ATCAATGCCATTC-------CTTCATAA--ATAA--GC-ATAA-G-AAA---TTTACCGT-GTTCTCC----T---T---AC-ATTGAGTAGA-CC---------AGTA-----------C----attggtgtttgtaataattttgctcgcgcttgcgcatatccaccatcaatgccattccttcataaataagcataagaaatttaccgtgttctccttacattgagtagaccagtactc
gi|6 : taatattctgatattatcgtagggaaaaaacattacttttatatcaagctatatatttttttatttattagtagttatatgcaaataaagtaatcaaactacatgtaatttcctatttaataatgtattctccgagtcgaatactgaacgcaccatttctaaatcacatggcgttgcacgcgaacaatttacttgacaacgtgaaagcgtgtatggcctgctggctgttggcaggacataccggtattcagtgataaaagacagtgagccagacaacagggtagagagaatcactttgagcaatggaaaggctatcaaatgaaatcgccattcagtacgactacataattatactgtaagcgaaatccccgtctccattggtgtttgtaataattttgctcgcgcttgcgcatatccaccACGTGA--AAGAGTGGGTGGCATGCTTG----CTGT-TTGTGGCTGG-GACA------CATTCAGCG-ATAAAA-tc
gi|6 : tgacatGCAA-GGA--AGTTGA--ATT-ATAAA-TTTCGTAT-TC-AACTTGAA-AT---CGCCATTtatgcactgcaaggaagttgaattataaatttcgtattcaacttgaaatcgccatttggtacaactacatgttgtaaacaaatattcctcatcgtccatgatgtttcaaaaaatatttttcttgcgcacttgtacacatccaccataaacattcatttttcattattatgcaatagaaaatcgctgttttcccctaaatgtaacattgagtagacctatcccttaaatacctgcataatttgtcaaaattgtcagatcataatatttttcatggtctatcagatacactagctgacaaaattctaggtcttctttttaacacatcaaacaaaattccatttaatactatacatatatacttttaa
gi|6 : tgacatacgtgaaagagtgggtggcatgcttgctgtttgtggctgggacacattcagcgataaaatatgcactC-ACCATAAA---CA-T-TCATTT--------TTCATTA--TTAT--GC-AATA-G-AAA---ATCGCTGT-TTTCCCC----TAAATGTAAC-ATTGAGTAGA-CCTATCCCTTAAATA-----------C----C-----T----GCA--TA-ATTTGTCAAAATTGTCAGAT--CATAAT---A-------TT-----T-TTCATGGTCTATCAGATACACTAGC----TGACAAAAT----T---CTAGGTCTTCTTTTTAACACA--TCAAACAAAA-TTCCATTT-----AATACTATACA-TATA-TACTTTTAtggtacaactacatgttgtaaacaaatattcctcatcgtccatgatgtttcaaaaaatatttttcttgcgcacttgtacacatccaccataaacattcatttttcattattatgcaatagaaaatcgctgttttcccctaaatgtaacattgagtagacctatcccttaaatacctgcataatttgtcaaaattgtcagatcataatatttttcatggtctatcagatacactagctgacaaaattctaggtcttctttttaacacatcaaacaaaattccatttaatactatacatatatacttttaa
gi|7 : tgacatacgtgaaagagtgggtggcatgcttgctgtttgtggctgggacacattcagcgataaaatatgcactgcaaggaagttgaattataaatttcgtattcaacttgaaatcgccatttggtacaactacatgttgtaaacaaatattcctcatcgtccatgatgtttcaaaaaatatttttcttgcgcacttgtacacatc--TC-GT-G-ACCACGTGA-TGTTGCACGCGG-AAT----------------AATT-ACATG-GC-AACGTGC--AAGCATGGACGACCTGCAGA----ATGT-T---AGC-GG-GAGA------CATTC--------AAA-G--------AGAC-GG-A-A--AAC-AGGG-----TAAAGATATCCACT-TTG-AGCAATGGA--AG--GG--ATT----------------TT-AACATGTA-ATCA-C--CATTa
gi|7 : caaattcgaaatag-AAA---A--ACCGG-TTTCGTC----C---A---AG-ATTTAATAGA-CG---------AGTA-----------C----T---CAT----TTA--AA-AACTGTCAA----GTCA-----TGC--T---A-------TT-----A-ATGATTGTTTTTCATA--------C----TGACAAAAC--ACA---CAAGGT--ACTTTC-A--GCG--TCGAACAAAA-TACTGTTTTATC-AATAC--TTCA-CGTA-TACCTTTtagtacgactacatgtatatactgtaaacgaaaccctcatctcccatgatgtttctaatatttttctcgcgcgtatgcgcacgttcaccgtaaatgtaaaaaccggtttcgtccaagatttaatagacgagtactcatttaaaaactgtcaagtcatgctattaatgattgtttttcatactgacaaaacacacaaggtactttcagcgtcgaacaaaatactgttttatcaatacttcacgtatacctttg
gi|8 : caaattcgaaatagtcgtgaccacgtgatgttgcacgcggaataattacatggcaacgtgcaagcatggacgacctgcagaatgttagcgggagacattcaaagagacggaaaacagggtaaagatatccactttgagcaatggaagggattttaacatgtaatcaccatttagtacgactacatgtatatactgtaaacgaaaccctcatctcccatgatgtttctaatatttttctcgcgcgtatgcgcacgttcaccgtaaatgtATAT-GCTG---CAA-ATTTTTACTA-T-GATCGTAGGAATAA--------------A--AAGCATG-------T---G----------T-----T-------TCA------TA-T----T-A--AGCT-ATACAC-TT-TCTGCAAATTA--TACAATT--GAACTCAAT-AGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--ATGTATTTTCTGAGTTGGATAGTG--AACACC-C-CA-T--TC---AGA--A-ATAT--TC-AT-A-ATCACATGA-CATTGCA-----------C-G--AA-GTAAACAATT-CCATG-GC-GACGTGA--CGCTGCAGATGACCTGTTGG----CTGT-T---GAT-GG-GCCA------CATCCAGCG-ATATAA-GA-CAGT-CAGAC-GG-A-A--AAC-AGGG---GACAGAG--AACCACG-CTG-AGCAAGAGAAGGG--GG--GTTCA--AA-TTTCATGT-TC-AGCATAAA-ATCA-C--CATTC-------g
gi|9 : agagctatcatctgtcaaagctaactgtatGTGA-CGTTGCACGCGG-AA-----------GTGAACAATT-ACACG-GC-GACGTGA-----------CGACATGCAGG----CTGT-T---TGT-GG-TACA------AATTCAGCG-ATAAAA-GA-CAAT-CAGAT-----------C--------GAT-TAAAT-ACCACT-TTG-AGAAATGGAAGGG--GG--GTTAA--AA-CTTCATG-GTT-AACATGAT-ACTA-C--CATTC-------ag
gi|9 : TCATCCATC-CAC-TGTA-A--A-CCTCATTC-------CTTCA-----------------A-G-ATA---A---CGGC-TTTCCCC----T---T---AT-ATCGAGTAGA-CT------------------------C----C---TGT----ATA--TA-ATTATTCGAAATTGTCA-----AAT--C---A-------TT-----aatacgactacatgctataaaacgaaattccatttttcattatgtttttaattttaaaaaattatcgcgctcttgcgctcatccatccactgtaaacctcattccttcaagataacggctttccccttatatcgagtagactcctgtatataattattcgaaattgtcaaatcattaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|33 ): TTCCATCGTAAAAATGCAAAATAAATTCATCGCTTTCTCCTTAAAATGAGTAAAAGAGTACTCTT
Alignments
lowQualScore : 22222222222222 55555555555555555555555555555555555555555555 111111111 1 111 4444444444444 333333333333333333 2222222222222 111 1111 11 1111111 1111111 44444444444444444444444444444444444444444 2222222222222222222222 11111 222222222222222 333333333 11111
lowQualScore : 6 777 4 3 3 3 0 0 11111111111111 55 2 33333333333333333333333333333333333333333333 3 555 222222222 1 55 3 5 0 44 44 1 3 444 777777 888 5 11 0 2 33 888 2 2 44 9999999999999 33 2 2 2 2 33 1111 444444444444444444 2 2 1 2 2 33 4 5555 2 444 2 2 777777 0 777 2 22 33 3 3 6 44 3 6666666666666 3 3 1 222 55 999 4444 4 55 3 2 3333333 0000000 77 66 2 2 2 444 0 4 2 0 6666 555 555 3 3 11111111111111111111111111111111111111111 66 4 0 5 6666666666666666666666 11111 5 1 777777777777777 333333333 22 55 55 3 66666 555 3 3
lowQualScore : . ... . . . . . . .............. .. . ............................................ . ... ......... . .. . . . .. .. . . ... ...... ... . .. . . .. ... . . .. ............. .. . . . . .. .... .................. . . . . . .. . .... . ... . . ...... . ... . .. .. . . . .. . ............. . . . ... .. ... .... . .. . . ....... ....... .. .. . . . ... . . . . .... ... ... . . ......................................... .. . . . ...................... ..... . . ............... ......... .. .. .. . ..... ... . .
lowQualScore : 7 888 4 2 6 6 4 2 44444444444444 00 0 11111111111111111111111111111111111111111111 3 888 000000000 5 22 1 4 2 66 66 4 1 777 777777 888 1 99 2 0 77 111 9 9 22 8888888888888 44 5 5 5 4 22 6666 666666666666666666 7 7 2 5 5 22 4 3333 5 444 5 5 222222 2 444 7 99 55 1 1 2 22 1 1111111111111 3 3 5 999 00 111 2222 0 88 1 9 5555555 0000000 99 88 9 9 7 777 8 5 5 4 5555 444 444 1 3 88888888888888888888888888888888888888888 11 0 5 8 9999999999999999999999 11111 0 0 111111111111111 888888888 55 00 00 6 88888 555 6 6
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATAT-GCCG---TAA-TTTTTGGATA-T-TATCGTAGGAATAA--------------A--AAGCATG-------T---G----------T-----A-------TCAAG---CTA-TA---T-A--AGCT-ATACAC-TT-T-TGCAAATTA--TGCAATT--TAACTCGAT-CGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--ATGTATTCTCCGAGTCGGATAGTG--AACG-C-C-CA-T--TT---AGA-TA-AT-T--TC-AT-G-ATCACGTGA-CGTTGCACGCGG-AATTTC-G--AA-GTAAACAATT-ACATG-GC-GACGTGA--AAGCGTGGACGGCCTGCGGG----CTGT-T---GGC-GG-GACA------CATTCAGCG-ATAAAA-GA-CAGT-CAGAC-GG-A-A--AAC-AGGGCA-GANAGAAATAACCACT-TTG-AGCAATGGA--GG--GG--GTT-A--AA-TTTCATGTATC-AACATGAA-ATCA-CGTCATTC-------CTTCATAA--ATAT--GC-ATTA-G-AAA---ATCNCCGT-TTTCCCC----T---T---AC-ATTGAGTAGA-CC---------AGTA-----------C----C---AGT----GTA--TA-ATTTGTCGAAATTGTCA-----CAT--T---A-------TT-----T-TTCATNGTTTATCANA--------C----TGACAAAAC--A-A---CAAGGTCTGCTTTTTA--ACA--TCGAACAAAA-TACTGTTT-----AATAC--GGCA-CATA-TACCTTTA
Reference ( family-3717 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATAT-GCCG---TAA-TTTTTGGATA-T-TATCGTAGGAATAA--------------A--AAGCATG-------T---G----------T-----A-------TCAAG---CTA-TA---T-A--AGCT-ATACAC-TT-T-TGCAAATTA--TGCAATT--TAACTCGAT-CGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--ATGTATTCTCCGAGTCGGATAGTG--AACG-C-C-CA-T--TT---AGA-TA-AT-T--TC-AT-G-ATCACGTGA-CGTTGCACGCGG-AATTTC-G--AA-GTAAACAATT-ACATG-GC-GACGTGA--AAGCGTGGACGGCCTGCGGG----CTGT-T---GGC-GG-GACA------CATTCAGCG-ATAAAA-GA-CAGT-CAGAC-GG-A-A--AAC-AGGGCA-GANAGAAATAACCACT-TTG-AGCAATGGA--GG--GG--GTT-A--AA-TTTCATGTATC-AACATGAA-ATCA-CGTCATTC-------CTTCATAA--ATAT--GC-ATTA-G-AAA---ATCNCCGT-TTTCCCC----T---T---AC-ATTGAGTAGA-CC---------AGTA-----------C----C---AGT----GTA--TA-ATTTGTCGAAATTGTCA-----CAT--T---A-------TT-----T-TTCATNGTTTATCANA--------C----TGACAAAAC--A-A---CAAGGTCTGCTTTTTA--ACA--TCGAACAAAA-TACTGTTT-----AATAC--GGCA-CATA-TACCTTTA
gi|1 : AATAATAT-GCCG---TAA-TTTTTGGATA-T-TATCATAGGAATAA--------------A--GAGCAAG-----------G----------A-----A-------TCAAG---CTA-TA---T-G--AGTT-ACACACGTT-T-TGCGAATTA--TGAAATT--TAATTCAAT-AGGATTGAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--GTGTATTCGATGAGTCGGATAGTATCCATG-A-C-CA-GAGTT---GGA-TA-GT-T--TCCAT-G-ACCACGTGA-CAATGCACGCGG-AACTTC-G--AA-GTAAAGAATT-GCATG-GC-AACGTGA--AAATGTGGACGGCCTGGGGG----CTGT-T---AGT-GG-GACA------CATACAACG-ATAAAA-GA-CAGT-CAGGT-GG-A-A--AAC-AGGGTA-GAAAAAAATAACCAAA-ATG-AGCAATGGA--GG--GA--ATT-A--AA-TTTGATGTATA-AACATGAA-ATCA-CGTCATTC-------CTTCATAA--ATAT--GC-ATAA-T-AAA---ATCACCAT-TTTCTCC----T---T---AC-ATTGACTAGA-TC---------AGTA-----------T----C---AGT----GTA--TA-ATGTGTCAA----GTTA-----CAT--T---A-------TT-----T-TTCATCGTTTATCAAA--------T----CGACAAAAA--A-AAACCAAGGTCTGCTTTTTA--ACA--TTGAACAAAT-TACTGTTT-----AATAC--GATG-CATA-TACCTTTA
gi|10 : gtgtatgataagcaaagtaaatgaacatttt---TAA-TTTTTGGGTA-T-CATCGTAGGAATAA--------------A--AAGCATG-------TTTTA----------T-----A-------TCAAG---CTA-TG---T-A--AG----------TT-T-TATAAACTC--TGCAAAT--TAAGTCAAT-AAGATTAAAAAGTAAT---CAAGCTG---------------TTAAT---AT-TATTCTCTTAATCGGATAGTG--AACG-CTC-CA-T--TTCG-AAA-TACATGTAGTC-AT-G-ATCACTTGA-CGTTGCACGCGT-AATTTC-G--AAAGTAAACA---------------C-TAA--AAGTGGGGGCAGTTCATAGG----TTGT-T---GAC-AG-GACA------TATTCA-------AAA-GA-TAG-----AC-GG-A-A--AAC-AG-----GATAGAGATAACCATTATTG-AGCAATGGA--
gi|11 : taACGTC-C-CA-T--TTCA-AAA-TA----T--CC-GT-A-ATCATGTGA-TGTTGCACGTGG-AATTTC-GAAAA-GTACACCATT-ACATG-GC-GACGTGATTGAGCGTGGACGACCTGTGGA----ATGA-T---GGC-AG-A------------TC----------A-GA-CCAT-CAGAT-GG-G-A--AAC-AGGACG-GAGAG----AACCATT-TTG-AG---------GG--GA--ATT-A--AAGTTTCATG-ATCAAATATGAA-ATCA-C--CATTa
gi|11 : A-TGTCATTC-------CTTCATAA--ATAT--GC-ATTACA-AAA---ATCTCCAT-TTtggatcgaatatattttaacctcccagtatgtgatatatttttttctcacccaagtgcgaatgtcattccttcataaatatgcattacaaaaatctccattt
gi|12 : acgtcccatttcaaaatatccgtaatcatgtgatgttgcacgtggaatttcgaaaagtacaccattacatggcgacgtgattgagcgtggacgacctgtggaatgatggcagatcagaccatcagatgggaaacaggacggagagaaccattttgaggggaattaaagtttcatgatcaaatatgaaatcaccatttggatcgaatatattttaacctcccagtatgtgatatatttttttctcacccaagtgcga-TTTCTCC----T---T---AA-ATTGAGTAGA-AT---------AGTATT---------C----CTTTAATAACCGTAATTA-ATTTGTCCATACTGTCA-----AAT--C---A-------TTCTACCT-TTCACAGTTAAT------------------------------A---CATGGTCAGCTTTTAC--ACA--TCTATCAAAA-TACTGTTT-----AATGC--AGTA-CATATTACC
gi|13 : attcagtatgactacatactgtaaaattctcatttcccatgatatttttattaataaatttttgtgtgtgcttacacacatctaccattcatatcattcctataTAT--GC-AATA-G-AAA----TCGCTGT-TTTCCCCTATAT---T---AC-ACT--GTAGA-CCTACCCTTA-ATTA-----------CCTGAC---ATT----GTA--TATATTTGTCAAA
gi|14 : cgtattcacttgaaatcgccattgtacaactacatagcttgctaaacaattattcctcatcgtccatcggatgtttaaaacaattgtattttcttgcgcacttgtacacattcaccataaacaatgtttaaatttttttcgaatttgttT-GACA---TAA-TTGTTGGATAGTATATTGTAGGAATGA--------------A--AA---TG-------T---G----------T-----T-------T--------TA-TA---TCA--AGCT-ATACA-------------------GCAA-------CTTGAT-TGGTTAAAAAAGTAATATATGAGATA------ATTTCCCATTTAATC--A--TATTCTTCGAGTCGGACA--G--AATGCC-C-CA-T--TTTC-AAA-TA----T--TA-AT-G-ATCACTTGA-tgtataataa
gi|15 : agaattgatatatttttaaaagttatttatgtcGGATTAAAGA-TAAT---CAAGCTA------ATTTCCCGTGTAACT--ATTTCATCTCTGTGTCGGATAATA--AACG-CAC-AA-T--TT---AGA--A-ATAT--TT-AT-G-ATTACAT-A-T-------------ATTTA-G--A----AAACAAAT-AC--G-AC-GGTGCGC--AAGCGGAGACGACCTGCAGG----CTGA-G---GGC-GG-AACA------CGCTCAGTC-ATAAAG-GA-AAG---AGAC-GGTA-A--GAC-AGGGTA-TAGAGA
gi|16 : AACAATT-ACAAGAGC-AACATGA--AAGCATGGATTGTCCGCAGA----CTGT-T---GGT-GGCAACA------CATTATGTG-ACAACA-GATCAATGCAAGC-GG-ACATTAACGAGGGTA-GAGAGAA-----CATT-CCATAGCAAGGGA--TG--GG--TTA-A--AA-TTTTA-G-ATT-AACATAAAGATTA-C--CATTC-------
gi|17 : AACAATATTGCCGATATAAACCCTTACA-A-T-TATCG-AGGAATAA--------------A--AATCATG-------T---GATTTTTTTTTT-----A-------TCAAA---CTA-CA---T-A----CT-GTATAT-GT-TATATAAATTT--TGCAGTT--AAATTCAAT-CGGGTCGAATAGTAAT---CA---TA------A--------TGAAT---AT-CATTATCCAAGTCGGATAATA--AACG-T-C-CA-accagtatagcaactactcttatgatt
gi|18 : aagagacgtcatcagcATG-GC-GACGTGA--AAACGTGGACGGCCTGCAG----------T-----------ACA------CAT---------------A-CAGT-AGGAC-CG-G-A--AAT-AGGGCC-GATAG----AACTACT-TTC-AGCAACGGA--AA--GGCAATT-C--AA-TTTTATGT-TC-AACATGGC-ATCA-CAT-------------TTCAGGACGA-AT--GC------G-GAA---ATCTCCGTGTTTCCat
gi|19 : caAT-CGGATTAAAGA-TAAT---CAAGCTA------ATTTCCTGTGTAGCT--ATTTCATCTCTGTGTCGGATAATA--AATG-TGC-AA-T--TT---AGA--A-ATAT--TT-AT-G-ATTACAT-A-T-------------ATTTA-G--A----AAACAAAT-AC--G-AC-GGTGCGC--AAGCGTAGACGACCTGTAGG----CTGA-T---GGC-GG-AACA------CGCTCAGTC-ATAAAG-GA-AAGaatattttttgtcccgtacttgcgcacatcta
gi|2 : AT-GCCG---TAT-TAATTAGATA-T-TATCGACAGAATAC--------------A--AATCATGCACTTTTT---G----------C-----AA------GCAAG---CTA-TA---T-T--AGTT-AT-TAC-TT-TATGCAAACCA--TGCCATT--TAACTCAGT-CGGATTAAAACGTAAA---CAAACTA------ATTTTCTATTTAGTT--ATTTCTTCTCCGAATCTGATAAAG--AACG-C-C-CC-T--TTTCGAAA-TA----T--TT-AT-G-ACCTTATGA-CGCCGCCCG--------TT-G--A---T---CAATT-ACGTG-------------AAGC-------GCCAGCAGG----TTGT-T---GGT-GG-GACA------CATTCAGGG-AGAAAATGA--AGT-CAAATGGG-A-A--AAC-AGTGCA-GATA-AAAT---CACT-TTG-GGTAATaga
gi|2 : atattttcctaatttacatgtatttaaaggtataaC-AAGATGAA-A--G-CGTCCCTC-------ATTTATAT--ATTT--GC-ATTA-G-AGA---ATC-CCG-----------------T---GC-ATTGAATAGA-CT---------AGTACTCCTTTCATGC----C---AAT----ATA--TA-ACTTATCAGCATT-TCA-----ataaaattgttacgcaaaaatgatcttaatacgagtacatactgtaagtgaaatcctcttctgctgcatattttacgcgcgtttgcgcacattcgccaagatgaaagcgtccctcatttatatatttgcattagagaatcccgtgcattgaatagactagtactcctttcatgccaatatataacttatcagcatttcaagatgcatcatactaactaactctgatctgatttacaatatagacaacata
gi|20 : atattttcctaatttacatgtatttaaaggtataaatgccgtattaattagatattatcgacagaatacaaatcatgcactttttgcaagcaagctatattagttattactttatgcaaaccatgccatttaactcagtcggattaaaacgtaaacaaactaattttctatttagttatttcttctccgaatctgataaagaacgccccttttcgaaatatttatgaccttatgacgccgcccgttgatcaattacgtgaagcgccagcaggttgttggtgggacacattcagggagaaaatgaagtcaaatgggaaaacagtgcagataaaatcactttgggtaatataaaattgttacgcaaaaatgatcttaatacgagtacatactgtaagtgaaatcctcttctgctgcatattttacgcgcgtttgcgcacattcgcA-----------C----C---AAT----CAA--TG-ATTTGCCGAAATTGTAAGA---TAT--TTTCA-------TT-----T-TGAATTGTTTATAAAT--------C----TGGCATAATTTA-T---T--GCTCTGGTTTCCG--ACA--T---ACAAAAACACCGTTTTTTAAAACAG--GGCA-CACA-TACCTTagatgcatcatactaactaactctgatctgatttacaatatagacaacata
gi|21 : ttcaatagaccatgcaatgcttctttaaaAATTCGAT-CGAATCAAAAAGAAAT---CAAGCTA------ATATCC-----AA----ATG----CTGCG----GAATATTC--AACA-T-CTCA-T--TTTCAAAA-TA----T--AC-AC-G-ATCATATAG-C------CTCGG-AA---------A-GTTAACAA---ATATG-GC-GAAGCGA--
gi|22 : catatttattttcttcaaaac--AGTT-ATCCAC-TG-T-AGAAAATTA--TGCAATC--TAACTCAGT-CGGACTAAAATTTAAT---CAAGCTA------ATT---TATCTAATC--ACATGTTCCCTGAGTCGGATGGTG--AACGCC-C-CG-T--TT---CGA--A-AA-A--TG-AT-G-ATCACGTGA-CGT
gi|23 : A-CGTCATTC-------CTTCCTAA--ATAT--AC-ATTA-G-AAA---A--CCCGC-TTTCTCC----T---T---GC-ACTGAGTgag
gi|24 : cagaaatcacaattcagtacgactacatcccaatcttctaaaaatatttatcccgcgcttgaacatatttaccataaCATTAG-GCCA---TAA-TTTTAGGATA-T----CGTGGGAATAATAATAATAAAAACAACCAAACATG-------T---G----------TTTTATA-------TCAAG---CTA-TA---T-A----------CAC-TT-TATGCAAATTA--TGCAATT--TAACTcccg
gi|25 : gttaatgctacatgGGACGGAACACAGGATCACTGT-T---GGT-GG-GACG------CATTCAGTG-ATAAAA-CA-CCCT-CAGAT-GG-A-A--AAC-AGTACA-G---GATA-AACCACT-TTG-AGCAATGGAC-TG--GA--GTT-A--AA-TTTGATGT
gi|26 : c--ATTTATTATCTGAGCTGGATAATG--AAGG-C-C-CAAT--TT---AAAATA----T--TA-AT-A-ATCACGTGG-CGta
gi|27 : ataccattgaacactttcaggctagaatattttttagcttaccctcagtttgtcgA-----CAT--T---T-------CT-----TGTTCATAGTTTAACACA--------CCAGCTGACAAAAC--ATA---CGAA--CTGCTTTTTA--ACA--ACGAACAACA-TTCTGTTC-----AATAC--TGCA-CATA-TA
gi|28 : A-ATAT--TC-AT-TTATCACAAGA-CGTTCCATGCAG-AATTTCAG--AA-GTAAATGATT-ACATG-GC-GACGTGA--AAGTGAGGAATACCTGTTGA----CTAT-T---TGT-GG-GACA------CATTCAGgttgtatttttaaaggtta
gi|29 : ttcaaCAAG---CTA-TA---C-ACAAGTC-ATACAC-TTAC-TGCAAATTA--TACAATT--CAACTTGAT-CAAATTCAAAAGTTAT---CAAGCTT------ATACCCTACTTA--C--ATGTA
gi|3 : cTA-T-TA-CAAAGGAATAA--------------A--AAGCATGAT-----T---G----------T-----GCTTTTACTCAAGACTCCAGTA---T------CT-ATGCAC-AT-TATGTGATTTAATTG-ATTT--TAATTTGAT-TGGATTAAA--GTAAT---CGAAATA------ATTTCGTATAAAGTCTGATGT---TTCAGAGCCAGAC-GTG--AAAG-C-C-CA-T--TT---CGA--A-AT-A--TC-ATCG-ATC-TGTGTTCTTTGC---TGATAATAAA-A--AA-G--AACAAAT-ACATG-GCCAATGTGA--AAGGCTGGATAGC-TGCGGG----CTTTAT---GGT-TG-GGCA-------AT-CAGTGGATACAA-GA-CAGT-CGGAA-AT-ATA--AAC-AGGGCCTAAGAGAA-----CACT-TTG-AGCAATGAA--GG--GA--G
gi|3 : ATC-ACTAT-AA-AT----GTCACTC-------CTTCATAAT-ATAT--GT-ATTT-T-AGA---ATCTCCCT-TTTCCTA----T---T---GC-ATTGAATAGATTC---------AATA-----------C----C---AGT----aagccacttttgagcaatgaaaggggagttaaaaattccaacgtttaaacataaacattctcgtacgagctacatactgtaacaatcgtcatctctcgtgaagcgttccgatatttatttttgtatgcttagcacatcactataaatgtcactccttcataatatatgtattttagaatctcccttttcctattgcattgaatagattcaataccagtaatcctttaataacagta
gi|30 : tattacaaaggaataaaaagcatgattgtgcttttactcaagactccagtatctatgcacattatgtgatttaattgattttaatttgattggattaaagtaatcgaaataatttcgtataaagtctgatgtttcagagccagacgtgaaagcccatttcgaaatatcatcgatctgtgttctttgctgataataaaaaagaacaaatacatggccaatgtgaaaggctggatagctgcgggctttatggttgggcaatcagtggatacaagacagtcggaaatataaacagggcctaagagaacactttgagcaatgaagggagaagccacttttgagcaatgaaaggggagttaaaaattccaacgtttaaacataaacattctcgtacgagctacatactgtaacaatcgtcatctctcgtgaagcgttccgatatttatttttgtatgcttagcac-T--TC-AT-G-ATCACGTGA-CGATACACGCGG-AATTTC-GA-AA-GTAAACA------ATG-GC-GACGTGA--AAGTGTGATGGGTCTGCGGaatcctttaataacagta
gi|31 : ttta-ATCTGTCGAAATTGTCAAATCGTAT--T---A-------AT-----T-TTCACAGTTAATCATA--------C----TAACAAATC--A-
gi|32 : CTG---TAA-TCTTTGAATA-T-TTCCGTAAAACTAA--------------A--TAGCGTT-------TT--A----------T-----A-------TTAAG---CTA-TATTGT-A--AGTC-ATAGAC-TT-T-tacggttttgcatgattcata
gi|34 : AAGGTCTGCTTTTTA--AAAAATCGAACAAAT-TATTTTAT-----AATAT--TCCA-CATA-TACCTTTAataaat
gi|35 : TCATAA--ATATT-GC-ATTA-G-AAATAAATCACCAT-TTTCTCC----T---T---AA-AATGAGTAGA-CC---------AGT
gi|36 : AT---CAAGCTA------ATTTCCTATTTAATT--ATGTATTCTCTTAATGGGTTAGTG--
gi|37 : --GC-ATTA-G-AGA---ATCCCCGT-ATTCTCC----T---T---ACTATTGAGTAGA-TC---------AGTA-----------C----
gi|38 : CTTTTTA--ACA--TCGAACAAAA-TACTGTTT-----GATAC--GGCA-CATA-CAt
gi|39 : TTTTTA--GCA--TCGAACAAAT-TACTGTTT-----AATAA--GGTA-CATA-TACCttt
gi|4 : TTTT--ATC-T-TACCGTAGGAATAA--------------A--AGGCATG-------T---G----------T-----A-------T--------TA-TA---T-C--AATTCATAAA-------TGCAAATTA--CGCAATT--TAACTCAAT-TAAATCAAAGAGTAAT---CAATCCA------ATTTCCTATTTAACT--TTGTA-TCTTCGAGCCGGATAGGG--Ag
gi|4 : TTTATGA--ATATAAGC-ATTA-G-AAA---ATCACCAT-TCTCCCA----T---T---AC-ATTTAGTAGA-CC---------AATACTCCTTAATG-C----C---CGT----ATA--TG-ATTTGTCGAAATTGTCA-----CAT--C---ATAATATTTT-----T-TTCATCGTTTATCATT--------C----TGACAAAAT----A---CACGGCCTGGTTTTT---ACA--TCAAACAAAA-CGCTGTTT-----AATAA--GGCG-CACA-TGCctgaagcggaattcaaagaaaagtgtaaatgaccttcagggtgttgacgggactcagttaaccaataggataaattagagcattggttcgtatttaacgtgaactcactattcagtatgactgccgatatactgtaaataaaatccttatatcctttgatgattgtaataatatttttctcacgtgcttgcgtacatccaccataagtcttaaagagtttatgaatataagcattagaaaatcaccattctcccattacatttagtagaccaatactccttaatgcccgtatatgatttgtcgaaattgtcacatcataatatttttttcatcgtttatcattctgacaaaatacacggcctggtttttacatcaaacaaaacgctgtttaataaggcgcacatgca
gi|40 : ttttatcttaccgtaggaataaaaggcatgtgtattatatcaattcataaatgcaaattacgcaatttaactcaattaaatcaaagagtaatcaatccaatttcctatttaactttgtatcttcgagccggatagggactgaagcggaattcaaagaaaagtgtaaatgaccttcagggtgttgacgggactcagttaaccaataggataaattagagcattggttcgtatttaacgtgaactcactattcagtatgactgccgatatactgtaaataaaatccttatatcctttgatgattgtaataatatttttctcacgtgcttgcgtacatccaccataagtcttaaagagTTA--GCA--TCAAACAAAA-TACTGTTT-----AATAC--GGCACCATA-TACa
gi|5 : ---TAA-TATTCTGATA-T-TATCGTAGGGA--A--------------A--AAACAT-----------------------T-----A-------CT--T---TTA-TA---TCA--AGCT-ATATAT-TT-T-T-----TTA--TTTA-TTAGTAGTTATATGCAAAT---AAAGTAAT---CAAACTACATGTAATTTCCTATTTAATA--ATGTATTCTCCGAGTCGAATACTG--AACG-CAC-CA-T--TT---C---TA-A-------------ATCACATGG-CGTTGCACGCG------------------AACAATTTACTTG-AC-AACGTGA--AAGCGTGTATGGCCTGCTGG----CTGT-T---GGC-AG-GACATACCGGTATTCAGTG-ATAAAA-GA-CAGT-GAGCC-AG-A-C--AAC-AGGGTA-GAGAG----AATCACT-TTG-AGCAATGGA--AA--GG---------------C---TATC-AA-ATGAA-AT---CGCCATTCAGTACGACTACATAA--TTAT--ACTGTAA-GCGAA---ATCCCCGT-CTCCt
gi|5 : -ATCAATGCCATTC-------CTTCATAA--ATAA--GC-ATAA-G-AAA---TTTACCGT-GTTCTCC----T---T---AC-ATTGAGTAGA-CC---------AGTA-----------C----attggtgtttgtaataattttgctcgcgcttgcgcatatccaccatcaatgccattccttcataaataagcataagaaatttaccgtgttctccttacattgagtagaccagtactc
gi|6 : taatattctgatattatcgtagggaaaaaacattacttttatatcaagctatatatttttttatttattagtagttatatgcaaataaagtaatcaaactacatgtaatttcctatttaataatgtattctccgagtcgaatactgaacgcaccatttctaaatcacatggcgttgcacgcgaacaatttacttgacaacgtgaaagcgtgtatggcctgctggctgttggcaggacataccggtattcagtgataaaagacagtgagccagacaacagggtagagagaatcactttgagcaatggaaaggctatcaaatgaaatcgccattcagtacgactacataattatactgtaagcgaaatccccgtctccattggtgtttgtaataattttgctcgcgcttgcgcatatccaccACGTGA--AAGAGTGGGTGGCATGCTTG----CTGT-TTGTGGCTGG-GACA------CATTCAGCG-ATAAAA-tc
gi|6 : tgacatGCAA-GGA--AGTTGA--ATT-ATAAA-TTTCGTAT-TC-AACTTGAA-AT---CGCCATTtatgcactgcaaggaagttgaattataaatttcgtattcaacttgaaatcgccatttggtacaactacatgttgtaaacaaatattcctcatcgtccatgatgtttcaaaaaatatttttcttgcgcacttgtacacatccaccataaacattcatttttcattattatgcaatagaaaatcgctgttttcccctaaatgtaacattgagtagacctatcccttaaatacctgcataatttgtcaaaattgtcagatcataatatttttcatggtctatcagatacactagctgacaaaattctaggtcttctttttaacacatcaaacaaaattccatttaatactatacatatatacttttaa
gi|6 : tgacatacgtgaaagagtgggtggcatgcttgctgtttgtggctgggacacattcagcgataaaatatgcactC-ACCATAAA---CA-T-TCATTT--------TTCATTA--TTAT--GC-AATA-G-AAA---ATCGCTGT-TTTCCCC----TAAATGTAAC-ATTGAGTAGA-CCTATCCCTTAAATA-----------C----C-----T----GCA--TA-ATTTGTCAAAATTGTCAGAT--CATAAT---A-------TT-----T-TTCATGGTCTATCAGATACACTAGC----TGACAAAAT----T---CTAGGTCTTCTTTTTAACACA--TCAAACAAAA-TTCCATTT-----AATACTATACA-TATA-TACTTTTAtggtacaactacatgttgtaaacaaatattcctcatcgtccatgatgtttcaaaaaatatttttcttgcgcacttgtacacatccaccataaacattcatttttcattattatgcaatagaaaatcgctgttttcccctaaatgtaacattgagtagacctatcccttaaatacctgcataatttgtcaaaattgtcagatcataatatttttcatggtctatcagatacactagctgacaaaattctaggtcttctttttaacacatcaaacaaaattccatttaatactatacatatatacttttaa
gi|7 : tgacatacgtgaaagagtgggtggcatgcttgctgtttgtggctgggacacattcagcgataaaatatgcactgcaaggaagttgaattataaatttcgtattcaacttgaaatcgccatttggtacaactacatgttgtaaacaaatattcctcatcgtccatgatgtttcaaaaaatatttttcttgcgcacttgtacacatc--TC-GT-G-ACCACGTGA-TGTTGCACGCGG-AAT----------------AATT-ACATG-GC-AACGTGC--AAGCATGGACGACCTGCAGA----ATGT-T---AGC-GG-GAGA------CATTC--------AAA-G--------AGAC-GG-A-A--AAC-AGGG-----TAAAGATATCCACT-TTG-AGCAATGGA--AG--GG--ATT----------------TT-AACATGTA-ATCA-C--CATTa
gi|7 : caaattcgaaatag-AAA---A--ACCGG-TTTCGTC----C---A---AG-ATTTAATAGA-CG---------AGTA-----------C----T---CAT----TTA--AA-AACTGTCAA----GTCA-----TGC--T---A-------TT-----A-ATGATTGTTTTTCATA--------C----TGACAAAAC--ACA---CAAGGT--ACTTTC-A--GCG--TCGAACAAAA-TACTGTTTTATC-AATAC--TTCA-CGTA-TACCTTTtagtacgactacatgtatatactgtaaacgaaaccctcatctcccatgatgtttctaatatttttctcgcgcgtatgcgcacgttcaccgtaaatgtaaaaaccggtttcgtccaagatttaatagacgagtactcatttaaaaactgtcaagtcatgctattaatgattgtttttcatactgacaaaacacacaaggtactttcagcgtcgaacaaaatactgttttatcaatacttcacgtatacctttg
gi|8 : caaattcgaaatagtcgtgaccacgtgatgttgcacgcggaataattacatggcaacgtgcaagcatggacgacctgcagaatgttagcgggagacattcaaagagacggaaaacagggtaaagatatccactttgagcaatggaagggattttaacatgtaatcaccatttagtacgactacatgtatatactgtaaacgaaaccctcatctcccatgatgtttctaatatttttctcgcgcgtatgcgcacgttcaccgtaaatgtATAT-GCTG---CAA-ATTTTTACTA-T-GATCGTAGGAATAA--------------A--AAGCATG-------T---G----------T-----T-------TCA------TA-T----T-A--AGCT-ATACAC-TT-TCTGCAAATTA--TACAATT--GAACTCAAT-AGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--ATGTATTTTCTGAGTTGGATAGTG--AACACC-C-CA-T--TC---AGA--A-ATAT--TC-AT-A-ATCACATGA-CATTGCA-----------C-G--AA-GTAAACAATT-CCATG-GC-GACGTGA--CGCTGCAGATGACCTGTTGG----CTGT-T---GAT-GG-GCCA------CATCCAGCG-ATATAA-GA-CAGT-CAGAC-GG-A-A--AAC-AGGG---GACAGAG--AACCACG-CTG-AGCAAGAGAAGGG--GG--GTTCA--AA-TTTCATGT-TC-AGCATAAA-ATCA-C--CATTC-------g
gi|9 : agagctatcatctgtcaaagctaactgtatGTGA-CGTTGCACGCGG-AA-----------GTGAACAATT-ACACG-GC-GACGTGA-----------CGACATGCAGG----CTGT-T---TGT-GG-TACA------AATTCAGCG-ATAAAA-GA-CAAT-CAGAT-----------C--------GAT-TAAAT-ACCACT-TTG-AGAAATGGAAGGG--GG--GTTAA--AA-CTTCATG-GTT-AACATGAT-ACTA-C--CATTC-------ag
gi|9 : TCATCCATC-CAC-TGTA-A--A-CCTCATTC-------CTTCA-----------------A-G-ATA---A---CGGC-TTTCCCC----T---T---AT-ATCGAGTAGA-CT------------------------C----C---TGT----ATA--TA-ATTATTCGAAATTGTCA-----AAT--C---A-------TT-----aatacgactacatgctataaaacgaaattccatttttcattatgtttttaattttaaaaaattatcgcgctcttgcgctcatccatccactgtaaacctcattccttcaagataacggctttccccttatatcgagtagactcctgtatataattattcgaaattgtcaaatcattaa
blockSeqs : T ATA A G G A TAATAATAAAAACA CC G ATTGTGCTTTTACTCAAGACT G TTG ACAAGTC A T A A AT AG A G ATA CATGTA CTG T AT G . CT T A . CGAAATACATG AG . C T T GT ACGC GAATTTCGAAAAGTA T T A A C TT A ATCA A TGT T C TACCGG TGG T TC TG G T C TT G GATAGAGATA A T T AGG TT CAA ATA G TA A G TCAATGC AGTACGA CG AA T C C TAA T G TATA AAA GTA T T TACCCTTAATTACCTGACATTG AT T T CATCATAATATT CTACC G A GATACACTAGC TTTAT AT AC AA A TTTAA TAT C T
blockSeqs : . . . G . . . . T TGATTTTTTTTTTATCAAA . . CAAGCT A C . A . . G . . . C T AT A . TC . . . TCGAAATA . . . . . GT ACGT TAATTTCGAAAGTA A . A . . . G . . . . . . TC . T T . . T . . CAGATAAAAT . . G AGG . A CA . CA . . TCACAT . T T . . . . G . . . . . . AGTACTCCTTTCATGCCAATA . . A GATATTTTCA . . T CACCAGC CATA GA . . . TATC A . .
blockSeqs : . . . A . . . . T CACTTTTTGCAAGCAAG . . CAATTC C C . A . . A . . . T T CA A . CC . . . TCAAAATA . . . . . GC ATGC GAATTTCAGAAGTA T . A . . . A . . . . . . TG . C T . . . . . CCTAAGAGAA . . C CT . T AA . A . . TCAC . . . . . . . T . . . . . . AATACTCCTTAATGCCCGTA . . C AATCGTATTA . . A ATC CACA AA . . . . G . .
blockSeqs : . . . A . . . . A TGTTTTATATCAAG . . CAAGCT A C . A . . A . . . T G AT A . CA . . . CAAAATA . . . . . GT ACGC GAATTTCGAAAGTA A . G . . . A . . . . . . TC . A T . . . . . TAGAGAGAA . . T G . G A . A . . TTAC . . . . . . . C . . . . . . AGTATTCCTTTAATAACCG . . A GATCATAATA . . A TAC TA AC . . . . T . .
blockSeqs : . . . G . . . . G TTTTATATCAAG . . TAGTT G C . C . . G . . . T A CA A . TG . . . TCAAATA . . . . . GT ACGC ATAATAAAAAAG T . A . . . A . . . . . . GG . C T . . . . . CGGAGAGA . . T T . G A . T . . GCGT . . . . . . . T . . . . . . TATCCCTTAAATACCTG . . A AATCA . . C TTC TT TA . . . . T . .
blockSeqs : . . G . . . . G TTATATTAAG . . AAGTC A C . . . . A . . . C T CT T . CC . . . AGAAATA . . . . . TT ACGC ATTTAGAA T . A . . . A . . . . . . TG . A T . . . . . CCGATAGA . . T A . A C . T . . TCGC . . . . . . . A . . . . . . AGTACTCATT . . A CATTT . . G TAC A AA . . . . G . .
blockSeqs : . . T . . . . G TGTTTCA . . AAGCT A C . . . . G . . . C G GT G . CA . . . AGAAATA . . . . . GA ACGC ATTTAGAA A . A . . . A . . . . . . TG . C T . . . . . CAGGATAA . . T G . A A . T . . TCGC . . . . . . . C . . . . . . CCTGTA . . A TGCTA . . T . . . . . . G . .
blockSeqs : . . T . . . . A TGTTT . . AAG A T . . . . G . . . T G AT A . CC . . . AGAAATA . . . . . GT CCG GAAAGTT T . A . . . A . . . . . . CG . C T . . . . . TAGAGAGA . . T A . G . . G . . CATT . . . . . . . A . . . . . . . . A AATCA . . . . . G . .
blockSeqs : . . . . . G TGTAT . . ACT A C . . . . A . . . T G AT G . T . . . CGAAAA . . . . . GT CTC CGAAGTA T . T . . . T . . . . . . CG . C T . . . . . TAAAGATA . . G A . G . . . . . TCAC . . . . . . . C . . . . . . . . . . . . G . .
blockSeqs : . . . . . TACTT . . CT . . . . . . T . . . A G AT G . C . . . AAAATA . . . . . AT T GAAGTG T . A . . . G . . . . . . CG . C . . . . . . GACAGAGA . . T A . . . . TCAC . . . . . . . A . . . . . . . . . . T . .
blockSeqs : . . A . . . . . . A . . . C G AT G . T . . . CGAAAT . . . . . GT A TTGAT T . A . . . G . . . . . . . . C . . . . . . GATTAAAT . . . . . CTAC . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . G A C . C . . . CTAA . . . . . . . GAAT . . A . . . T . . . . . . . . . . . . . . . . . . ACCT . . . . . . A . . . . .
blockSeqs : . . . . . G . C . . . . . . . . . . . . . . . . T . . . . . . . . . . TGT . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . T . . . . . . .
blockSeqs : . . A
blockSeqCons : TGCTTTTATCAAG******************************* AAGCT**** C* ** CC* ** GAATTTCGAAAGTA**** CAGAGAGA***** N* TCGC*** AGTACTCCTTAATACCGTG********************** TA*******
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATAT-GCCG---TAA-TTTTTGGATA-T-TATCGTAGGAATAA--------------A--AAGCATG-------T---G----------T-----A-------TCAAG---CTA-TA---T-A--AGCT-ATACAC-TT-T-TGCAAATTA--TGCAATT--TAACTCGAT-CGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--ATGTATTCTCCGAGTCGGATAGTG--AACG-C-C-CA-T--TT---AGA-TA-AT-T--TC-AT-G-ATCACGTGA-CGTTGCACGCGG-AATTTC-G--AA-GTAAACAATT-ACATG-GC-GACGTGA--AAGCGTGGACGGCCTGCGGG----CTGT-T---GGC-GG-GACA------CATTCAGCG-ATAAAA-GA-CAGT-CAGAC-GG-A-A--AAC-AGGGCA-GANAGAAATAACCACT-TTG-AGCAATGGA--GG--GG--GTT-A--AA-TTTCATGTATC-AACATGAA-ATCA-CGTCATTC-------CTTCATAA--ATAT--GC-ATTA-G-AAA---ATCNCCGT-TTTCCCC----T---T---AC-ATTGAGTAGA-CC---------AGTA-----------C----C---AGT----GTA--TA-ATTTGTCGAAATTGTCA-----CAT--T---A-------TT-----T-TTCATNGTTTATCANA--------C----TGACAAAAC--A-A---CAAGGTCTGCTTTTTA--ACA--TCGAACAAAA-TACTGTTT-----AATAC--GGCA-CATA-TACCTTTA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATAT-GCCG---TAA-TTTTTGGATA-T-TATCGTAGGAATAA--------------A--AAGCATGTGCTTTTATCAAG-------------------------------CTA-TA---TAAGCT----ATACAC-TT-T-TGCAAATTA--TGCAATT--TAACTCGAT-CGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--ATGTATTCTCCGAGTCGGATAGTG--AACGCC-C-CA-T--TT---AGA-TA-AT-T--TC-AT-G-ATCACGTGA-CGTTGCACGCGGAATTTCGAAAGTA----AACAATT-ACATG-GC-GACGTGA--AAGCGTGGACGGCCTGCGGG----CTGT-T---GGC-GG-GACA------CATTCAGCG-ATAAAA-GA-CAGT-CAGAC-GG-A-A--AAC-AGGGCAGAGAGA-----ACCACT-TTG-AGCAATGGA--GG--GG--GTT-A--AA-TTTCATGN-TC-AACATGAA-ATCGC---CATTC-------CTTCATAA--ATAT--GC-ATTA-G-AAA---ATCNCCGT-TTTCCCC----T---T---AC-ATTGAGTAGA-CCAGTACTCCTTAATACCGTG----------------------TA--TA-ATTTGTCGAAATTGTCA-----CAT--T---A-------TT-----T-TTCATNGTTTATCANA--------C----TGACAAAATA-------CAAGGTCTGCTTTTTA--ACA--TCGAACAAAA-TACTGTTT-----AATAC--GGCA-CATA-TACCTTTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|33 ): TTCCATCGTAAAAATGCAAAATAAATTCATCGCTTTCTCCTTAAAATGAGTAAAAGAGTACTCTT
Alignments
lowQualScore : 22222222222222 2222222222222222222222 333333333333333333333333 4444444444444 444444444444444444 11 111 1111 1111111 444444444444444 33333333333333333333333333333 222222222222222 2222222222222 11111
lowQualScore : 6 777 4 3 3 3 0 0 11111111111111 55 2 7777777777777777777777 3 555 3 000000000000000000000000 0 44 44 1 3 444 777777 888 5 11 0 2 33 55 6666666666666 33 2 2 2 2 1 1 222222222222222222 2 2 2 2 2 33 4 5555 2 444 2 2 777777 88888 2 55 3 3 3 00 44 3 1 3 6666 3 3 1 222 55 666 4444 4 1 55 3 5 44444 0000000 77 66 2 0 2 2 444 3 2 0 6666 555 555 2 9999999 6666 0 7 888888888888888 2 4 0 8 0 66 11111111111111111111111111111 4 1 1 222222222222222 0000000000000 44 44 3 66666 555 3 3
lowQualScore : . ... . . . . . . .............. .. . ...................... . ... . ........................ . .. .. . . ... ...... ... . .. . . .. .. ............. .. . . . . . . .................. . . . . . .. . .... . ... . . ...... ..... . .. . . . .. .. . . . .... . . . ... .. ... .... . . .. . . ..... ....... .. .. . . . . ... . . . .... ... ... . ....... .... . . ............... . . . . . .. ............................. . . . ............... ............. .. .. . ..... ... . .
lowQualScore : 7 888 4 2 6 6 4 2 44444444444444 00 0 0000000000000000000000 6 888 3 111111111111111111111111 2 66 66 4 1 777 777777 888 1 99 2 0 77 44 3333333333333 44 5 5 5 4 4 4 444444444444444444 7 7 8 5 5 22 4 3333 5 444 5 5 222222 00000 7 44 1 1 1 44 22 1 2 1 5555 3 3 5 999 00 888 2222 0 0 55 1 3 77777 0000000 99 88 9 1 9 5 444 4 4 8 1111 000 000 9 3333333 1111 2 3 777777777777777 7 0 5 3 7 11 99999999999999999999999999999 4 0 0 111111111111111 5555555555555 66 66 3 88888 555 6 6
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATAT-GCCG---TAA-TTTTTGGATA-T-TATCGTAGGAATAA--------------A--AAGCATG----TG------TTTTAT----A-TCAAG---CTA-TA---TA--AGCTATACAC-TT-T-TGCAAATTA--TGCAATT--TAACTCGAT-CGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--ATGTATTCTCCGAGTCGGATAGTG--AACGCCCC-ATTT---AGA-TA-AT-T--TC-AT-G-ATCACGTGA-CGTTGCACGCGG-AATTTCG-AAAGTAAACAATT-ACATG-GC-GACGTGA--AAGCGTGGACGGCCTGCGGG----CTGT-T---GGC-GG-GACACA------TTCAGCG-ATAAAA-GA-CAGT-CAGAC-GG-A--A--AAC-AGGGCA-GAGAG----AACCACT-TTG-AGCAATGGA--GG--GG--GTT-A--AA-TTTCATG-NTC-AACATGAA-AT--CGCCATTC-------CTTCATAA--ATAT--GC-ATTA-G-AAA---ATCNCCGT-TTTCCCC----T---T---AC-ATTGAGTAG-------ACCA----GTACTCC-TT-AA-TA-CC-G----TGTATA-ATTTGTCGAAATTGT--CA-----CAT--T---A-------TT-----T-TTCATNGTTTATCANA--------C----TGACAAA--ATA----CA-NGGTCTGCTTTTTA--ACA--TCGAAC-AAAATACTGTTT-----AATAC--GGCA-CATA-TACCTTTA
Reference ( family-3717 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATAT-GCCG---TAA-TTTTTGGATA-T-TATCGTAGGAATAA--------------A--AAGCATG----TG------CTTT-T----A-TCAAG---CTA-TA---TA--AGCTATACAC-TT-T-TGCAAATTA--TGCAATT--TAACTCGAT-CGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--ATGTATTCTCCGAGTCGGATAGTG--AACGCCCC-ATTT---AGA-TA-AT-T--TC-AT-G-ATCACGTGA-CGTTGCACGCGG-AATTTCG-AAAGTAAACAATT-ACATG-GC-GACGTGA--AAGCGTGGACGGCCTGCGGG----CTGT-T---GGC-GG-GACACA------TTCAGCG-ATAAAA-GA-CAGT-CAGAC-GG-A--A--AAC-AGGGCA-GAGAG----AACCACT-TTG-AGCAATGGA--GG--GG--GTT-A--AA-TTTCATG-NTC-AACATGAA-AT--CGCCATTC-------CTTCATAA--ATAT--GC-ATTA-G-AAA---ATCNCCGT-TTTCCCC----T---T---AC-ATTGAGTAG-------ACCA----GTACTCC-TT-AA-TA-CC-G----TGTATA-ATTTGTCGAAATTGT--CA-----CAT--T---A-------TT-----T-TTCATNGTTTATCANA--------C----TGACAAA--ATA----CA-AGGTCTGCTTTTTA--ACA--TCGAAC-AAAATACTGTTT-----AATAC--GGCA-CATA-TACCTTTA
gi|1 : AATAATAT-GCCG---TAA-TTTTTGGATA-T-TATCATAGGAATAA--------------A--GAGCAAG----GA----------------A-TCAAG---CTA-TA---TG--AGTTACACACGTT-T-TGCGAATTA--TGAAATT--TAATTCAAT-AGGATTGAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--GTGTATTCGATGAGTCGGATAGTATCCATGACCAGAGTT---GGA-TA-GT-T--TCCAT-G-ACCACGTGA-CAATGCACGCGG-AACTTCG-AA-GTAAAGAATT-GCATG-GC-AACGTGA--AAATGTGGACGGCCTGGGGG----CTGT-T---AGT-GG-GACACA------TACAACG-ATAAAA-GA-CAGT-CAGGT-GG-A--A--AAC-AGGGTA-GAAAAAAATAACCAAA-ATG-AGCAATGGA--GG--GA--ATT-A--AA-TTTGATGTATA-AACATGAA-ATCACGTCATTC-------CTTCATAA--ATAT--GC-ATAA-T-AAA---ATCACCAT-TTTCTCC----T---T---AC-ATTGACTAG-------ATCA----GTA-----TC-A--------G----TGTATA-ATGTGTCAA----GT--TA-----CAT--T---A-------TT-----T-TTCATCGTTTATCAAA--------T----CGACAAA--AAAAAACCA-AGGTCTGCTTTTTA--ACA--TTGAAC-AAATTACTGTTT-----AATAC--GATG-CATA-TACCTTTA
gi|10 : gtgtatgataagcaaagtaaatgaacatttt---TAA-TTTTTGGGTA-T-CATCGTAGGAATAA--------------A--AAGCATG----T--------TTTAT----A-TCAAG---CTA-TG---TA--AG---------TT-T-TATAAACTC--TGCAAAT--TAAGTCAAT-AAGATTAAAAAGTAAT---CAAGCTG---------------TTAAT---AT-TATTCTCTTAATCGGATAGTG--AACGCTCC-ATTTCG-AAA-TACATGTAGTC-AT-G-ATCACTTGA-CGTTGCACGCGT-AATTTCG-AAAGTAAAC-----AC-----------TAA--AAGTGGGGGCAGTTCATAGG----TTGT-T---GAC-AG-GACATA------TTC-------AAAA-GA------TAGAC-GG-A--A--AAC-AGGATA-GAGAT----AACCATTATTG-AGCAATGGA--
gi|11 : taACGTCCC-ATTTCA-AAA-TA----T--CC-GT-A-ATCATGTGA-TGTTGCACGTGG-AATTTCGAAAAGTACACCATT-ACATG-GC-GACGTGATTGAGCGTGGACGACCTGTGGA----ATGA-T---GGC-AG-A------------TC----------A-GA-CCAT-CAGAT-GG-G--A--AAC-AGGACG-GAGAG----AACCATT-TTG-AG---------GG--GA--ATT-A--AAGTTTCATG-ATCAAATATGAA-AT--CACCATTa
gi|11 : A-AT---GTCATTC-------CTTCATAA--ATAT--GC-ATTACA-AAA---ATCTCCAT-TTtggatcgaatatattttaacctcccagtatgtgatatatttttttctcacccaagtgcgaatgtcattccttcataaatatgcattacaaaaatctccattt
gi|12 : acgtcccatttcaaaatatccgtaatcatgtgatgttgcacgtggaatttcgaaaagtacaccattacatggcgacgtgattgagcgtggacgacctgtggaatgatggcagatcagaccatcagatgggaaacaggacggagagaaccattttgaggggaattaaagtttcatgatcaaatatgaaatcaccatttggatcgaatatattttaacctcccagtatgtgatatatttttttctcacccaagtgcg-TTTCTCC----T---T---AA-ATTGAGTAG-------AATA----GTATTCC-TTTAA-TAACC-G----TAATTA-ATTTGTCCATACTGT--CA-----AAT--C---A-------TTCTACCT-TTCACAGTT--------------------------A--ATA----CA-TGGTCAGCTTTTAC--ACA--TCTATC-AAAATACTGTTT-----AATGC--AGTA-CATATTACC
gi|13 : attcagtatgactacatactgtaaaattctcatttcccatgatatttttattaataaatttttgtgtgtgcttacacacatctaccattcatatcattcctataTAT--GC-AATA-G-AAA----TCGCTGT-TTTCCCCTATAT---T---AC-ACT--GTAG-------ACC------TAC-CC-TT-AATTA-CCTGACATTGTATATATTTGTCAAA
gi|14 : cgtattcacttgaaatcgccattgtacaactacatagcttgctaaacaattattcctcatcgtccatcggatgtttaaaacaattgtattttcttgcgcacttgtacacattcaccataaacaatgtttaaatttttttcgaatttgttT-GACA---TAA-TTGTTGGATAGTATATTGTAGGAATGA--------------A--AA---TG----TG------TTTTAT----A-TCAAG---CTA---------------TACA-------------------GCAA-------CTTGAT-TGGTTAAAAAAGTAATATATGAGATA------ATTTCCCATTTAATC--A--TATTCTTCGAGTCGGACA--G--AATGCCCC-ATTTTC-AAA-TA----T--TA-AT-G-ATCACTTGA-tgtataataa
gi|15 : agaattgatatatttttaaaagttatttatgtcGGATTAAAGA-TAAT---CAAGCTA------ATTTCCCGTGTAACT--ATTTCATCTCTGTGTCGGATAATA--AACGCACA-ATTT---AGA--A-ATAT--TT-AT-G-ATTACAT-A-T-------------ATTTAG-A----AAACAAAT-AC--G-AC-GGTGCGC--AAGCGGAGACGACCTGCAGG----CTGA-G---GGC-GG-AACACG------CTCAGTC-ATAAAG-GA-AAG---AGAC-GGTA--A--GAC-AGGGTA-TAGAG----A
gi|16 : AACAATT-ACAAGAGC-AACATGA--AAGCATGGATTGTCCGCAGA----CTGT-T---GGT-GGCAACACA------TTATGTG-ACAACA-GATCAATGCAAGC-GG-AC-ATTAACGAGGGTA-GAGAG----AA-CATT-CCATAGCAAGGGA--TG--GG--TTA-A--AA-TTTTA-G-ATT-AACATAAAGAT--TACCATTC-------
gi|17 : AACAATATTGCCGATATAAACCCTTACA-A-T-TATCG-AGGAATAA--------------A--AATCATG----TGATTTTTTTTT-T----A-TCAAA---CTA-CA---TA----CTGTATAT-GT-TATATAAATTT--TGCAGTT--AAATTCAAT-CGGGTCGAATAGTAAT---CA---TA------A--------TGAAT---AT-CATTATCCAAGTCGGATAATA--AACGTCCA-ATaccagtatagcaactactcttatgatt
gi|18 : aagagacgtcatcagcATG-GC-GACGTGA--AAACGTGGACGGCCTGCAG----------T-----------ACACA------T---------------A-CAGT-AGGAC-CG-G--A--AAT-AGGGCC-GATAG----AACTACT-TTC-AGCAACGGA--AA--GGCAATT-C--AA-TTTTATG-TTC-AACATGGC-AT--CA-CAT----------TTCAGGACGA-AT--GC------G-GAA---ATCTCCGTGTTTCC
gi|19 : caAT-CGGATTAAAGA-TAAT---CAAGCTA------ATTTCCTGTGTAGCT--ATTTCATCTCTGTGTCGGATAATA--AATGTGCA-ATTT---AGA--A-ATAT--TT-AT-G-ATTACAT-A-T-------------ATTTAG-A----AAACAAAT-AC--G-AC-GGTGCGC--AAGCGTAGACGACCTGTAGG----CTGA-T---GGC-GG-AACACG------CTCAGTC-ATAAAG-GA-AAGaatattttttgtcccgtacttgcgcacatcta
gi|2 : AT-GCCG---TAT-TAATTAGATA-T-TATCGACAGAATAC--------------A--AATCATG----CA------CTTT-TTGCAA-GCAAG---CTA-TA---TT--AGTTAT-TAC-TT-TATGCAAACCA--TGCCATT--TAACTCAGT-CGGATTAAAACGTAAA---CAAACTA------ATTTTCTATTTAGTT--ATTTCTTCTCCGAATCTGATAAAG--AACGCCCC-TTTT---CGA--A-ATAT--TT-AT-G-ACCTTATGA-CGCCGCCCG--------TTG-A---T---CAATT-ACGTG-------------AAGC-------GCCAGCAGG----TTGT-T---GGT-GG-GACACA------TTCAGGG-AGAAAATGA--AGT-CAAATGGG-A--A--AAC-AGTGCA-GATAA----AATCACT-TTG-GGTAATaga
gi|2 : atattttcctaatttacatgtatttaaaggtataaC-AAGATGAA-AG--CGTCCCTC-------ATTTATAT--ATTT--GC-ATTA-G-AGA---ATC-CCGT--------------------GC-ATTGAATAG-------ACTA----GTACTCCTTT-CA-TG-CCAA----TATATA-ACTTATCAG--------CA-----------------------------T-TTCAAGATGCATCATA--------C----TAACTAA--CTC----T---GATCTGATTTACA--ATA--TAG-AC-AACATAataaaattgttacgcaaaaatgatcttaatacgagtacatactgtaagtgaaatcctcttctgctgcatattttacgcgcgtttgcgcacattcgccaagatgaaagcgtccctcatttatatatttgcattagagaatcccgtgcattgaatagactagtactcctttcatgccaatatataacttatcagcatttcaagatgcatcatactaactaactctgatctgatttacaatatagacaacata
gi|20 : atattttcctaatttacatgtatttaaaggtataaatgccgtattaattagatattatcgacagaatacaaatcatgcactttttgcaagcaagctatattagttattactttatgcaaaccatgccatttaactcagtcggattaaaacgtaaacaaactaattttctatttagttatttcttctccgaatctgataaagaacgccccttttcgaaatatttatgaccttatgacgccgcccgttgatcaattacgtgaagcgccagcaggttgttggtgggacacattcagggagaaaatgaagtcaaatgggaaaacagtgcagataaaatcactttgggtaatataaaattgttacgcaaaaatgatcttaatacgagtacatactgtaagtgaaatcctcttctgctgcatattttacgcgcgtttgcgcacattcgcTTCAATAG-------ACCATGCAATGCTTC-TTTAA-AA-CC-AA---TCAATG-ATTTGCCGAAATTGTAAGA-----TAT--TTTCA-------TT-----T-TGAATTGTTTATAAAT--------C----TGGCATA--ATT----TATTGCTCTGGTTTCCG--ACA--T---ACAAAAACACCGTTTTTTAAAACAG--GGCA-CACA-TACCTT
gi|21 : AATTCGAT-CGAATCAAAAAGAAAT---CAAGCTA------ATATCC-----AA----ATG----CTGCG----GAATATTC--AACATCTC-ATTTTCAAAA-TA----T--AC-AC-G-ATCATATAG-CCTCG--------------G-AAAGTTAACAA---ATATG-GC-GAAGCGA--
gi|22 : catatttattttcttcaaaac--AGTTATCCAC-TG-T-AGAAAATTA--TGCAATC--TAACTCAGT-CGGACTAAAATTTAAT---CAAGCTA------ATT---TATCTAATC--ACATGTTCCCTGAGTCGGATGGTG--AACGCCCC-GTTT---CGA--A-AA-A--TG-AT-G-ATCACGTGA-CGT
gi|23 : CATA-TTT-ACCATAAA-----CGTCATTC-------CTTCCTAA--ATAT--AC-ATTA-G-AAA---A--CCCGC-TTTCTCC----T---T---GC-ACTGAGTgag
gi|24 : cagaaatcacaattcagtacgactacatcccaatcttctaaaaatatttatcccgcgcttgaaCATTAG-GCCA---TAA-TTTTAGGATA-T----CGTGGGAATAATAATAATAAAAACAACCAAACATG----TG------TTTTAT----A-TCAAG---CTA-TA---TA---------CAC-TT-TATGCAAATTA--TGCAATT--TAACTcccg
gi|25 : gttaatgctacatgGGACGGAACACAGGATCACTGT-T---GGT-GG-GACGCA------TTCAGTG-ATAAAA-CA-CCCT-CAGAT-GG-A--A--AAC-AGTACA-GGATA----AACCACT-TTG-AGCAATGGAC-TG--GA--GTT-A--AA-TTTGATG-TT
gi|26 : c--ATTTATTATCTGAGCTGGATAATG--AAGGCCCA-ATTT---AAAATA----T--TA-AT-A-ATCACGTGG-CGa
gi|27 : ataccattgaacactttcaggctagaatattttttagcttaccctcagtttgtcgA-----CAT--T---T-------CT-----TGTTCATAGTTTAACACA--------CCAGCTGACAAA--ACA----TA-CGAACTGCTTTTTA--ACA--ACGAAC-AACATTCTGTTC-----AATAC--TGCA-CATA-TA
gi|28 : A-ATAT--TC-AT-TTATCACAAGA-CGTTCCATGCAG-AATTTCA-GAAGTAAATGATT-ACATG-GC-GACGTGA--AAGTGAGGAATACCTGTTGA----CTAT-T---TGT-GG-GACACA------TTCAGgttgtatttttaaaggtta
gi|29 : ttcaaCAAG---CTA-TA---CACAAGTCATACAC-TTAC-TGCAAATTA--TACAATT--CAACTTGAT-CAAATTCAAAAGTTAT---CAAGCTT------ATACCCTACTTA--C--ATGTA
gi|3 : cTA-T-TA-CAAAGGAATAA--------------A--AAGCATGATTGTG------CTTT-T----ACTCAAGACTCCAGTA---T-----CTATGCAC-AT-TATGTGATTTAATTG-ATTT--TAATTTGAT-TGGATTAAA--GTAAT---CGAAATA------ATTTCGTATAAAGTCTGATGT---TTCAGAGCCAGAC-GTG--AAAGCCC--ATTT---CGA--A-AT-A--TC-ATCG-ATC-TGTGTTCTTTGC---TGATAAT---A-AAAAAGAACAAAT-ACATG-GCCAATGTGA--AAGGCTGGATAGC-TGCGGG----CTTTAT---GGT-TG-GGCA-A------T-CAGTGGATACAA-GA-CAGT-CGGAA-AT-AT-A--AAC-AGGGCCTAAGAG----AAC-ACT-TTG-AGCAATGAA--GG--GA--G
gi|3 : AA-AT---GTCACTC-------CTTCATAAT-ATAT--GT-ATTT-T-AGA---ATCTCCCT-TTTCCTA----T---T---GC-ATTGAATAGATTCAATACCA----GTAATCCTTT-AA-TA-aagccacttttgagcaatgaaaggggagttaaaaattccaacgtttaaacataaacattctcgtacgagctacatactgtaacaatcgtcatctctcgtgaagcgttccgatatttatttttgtatgcttagcacatcactataaatgtcactccttcataatatatgtattttagaatctcccttttcctattgcattgaatagattcaataccagtaatcctttaataacagta
gi|30 : tattacaaaggaataaaaagcatgattgtgcttttactcaagactccagtatctatgcacattatgtgatttaattgattttaatttgattggattaaagtaatcgaaataatttcgtataaagtctgatgtttcagagccagacgtgaaagcccatttcgaaatatcatcgatctgtgttctttgctgataataaaaaagaacaaatacatggccaatgtgaaaggctggatagctgcgggctttatggttgggcaatcagtggatacaagacagtcggaaatataaacagggcctaagagaacactttgagcaatgaagggagaagccacttttgagcaatgaaaggggagttaaaaattccaacgtttaaacataaacattctcgtacgagctacatactgtaacaatcgtcatctctcgtgaagcgttccgatatttatttttgtatgcttagcacatcactat-T--TC-AT-G-ATCACGTGA-CGATACACGCGG-AATTTCG-AAAGTAAACA------ATG-GC-GACGTGA--AAGTGTGATGGGTCTGCGGacagta
gi|31 : ttta-ATCTGTCGAAATTGT--CAAATCGTAT--T---A-------AT-----T-TTCACAGTTAATCATA--------C----TAACAAATCATA----C---GGTTT
gi|32 : CTG---TAA-TCTTTGAATA-T-TTCCGTAAAACTAA--------------A--TAGC--------G------TTTTAT----A-TTAAG---CTA-TATTGTA--AGTCATAGAC-TT-T-tgcatgattcata
gi|33 : TTC-------CATCGTAA--AAAT--GC-AAAA-T-AAA---TTCATCGC-TTTCTCC----T---T---AA-AATGAGTAA-------AAGA----GTACTCT-Tataaat
gi|34 : A-AGGTCTGCTTTTTA--AAAAATCGAAC-AAATTATTTTAT-----AATAT--TCCA-CATA-TACCTTTA
gi|35 : TCATAA--ATATT-GC-ATTA-G-AAATAAATCACCAT-TTTCTCC----T---T---AA-AATGAGTAG-------ACCA----GT
gi|36 : AT---CAAGCTA------ATTTCCTATTTAATT--ATGTATTCTCTTAATGGGTTAGTG--
gi|37 : --GC-ATTA-G-AGA---ATCCCCGT-ATTCTCC----T---T---ACTATTGAGTAG-------ATCA----GTACT
gi|38 : CTTTTTA--ACA--TCGAAC-AAAATACTGTTT-----GATAC--GGCA-CATA-CA
gi|39 : TTTTTA--GCA--TCGAAC-AAATTACTGTTT-----AATAA--GGTA-CATA-TACCttt
gi|4 : TTTT--ATC-T-TACCGTAGGAATAA--------------A--AGGCATG----TG------TATTAT----A-TCAAT---TCA-TA----A--A---------------TGCAAATTA--CGCAATT--TAACTCAAT-TAAATCAAAGAGTAAT---CAATCCA------ATTTCCTATTTAACT--TTGTA-TCTTCGAGCCGGATAGGG--Ag
gi|4 : TTTATGA--ATATAAGC-ATTA-G-AAA---ATCACCAT-TCTCCCA----T---T---AC-ATTTAGTAG-------ACCA----ATACTCC-TT-AA-TGCCC-G----TATATG-ATTTGTCGAAATTGT--CA-----CAT--C---ATAATATTTT-----T-TTCATCGTTTATCATT--------C----TGACAAA--ATA----CA-CGGCCTGGTTTTT---ACA--TCAAAC-AAAACGCTGTTT-----AATAA--GGCG-CACA-TGCctgaagcggaattcaaagaaaagtgtaaatgaccttcagggtgttgacgggactcagttaaccaataggataaattagagcattggttcgtatttaacgtgaactcactattcagtatgactgccgatatactgtaaataaaatccttatatcctttgatgattgtaataatatttttctcacgtgcttgcgtacatccaccataagtcttaaagagtttatgaatataagcattagaaaatcaccattctcccattacatttagtagaccaatactccttaatgcccgtatatgatttgtcgaaattgtcacatcataatatttttttcatcgtttatcattctgacaaaatacacggcctggtttttacatcaaacaaaacgctgtttaataaggcgcacatgca
gi|40 : ttttatcttaccgtaggaataaaaggcatgtgtattatatcaattcataaatgcaaattacgcaatttaactcaattaaatcaaagagtaatcaatccaatttcctatttaactttgtatcttcgagccggatagggactgaagcggaattcaaagaaaagtgtaaatgaccttcagggtgttgacgggactcagttaaccaataggataaattagagcattggttcgtatttaacgtgaactcactattcagtatgactgccgatatactgtaaataaaatccttatatcctttgatgattgtaataatatttttctcacgtgcttgcgtacatccaccataagtcttaaagagTTA--GCA--TCAAAC-AAAATACTGTTT-----AATAC--GGCACCATA-TACa
gi|5 : ---TAA-TATTCTGATA-T-TATCGTAGGGA--A--------------A--AAACAT-----TA------CTTT-T----A-T---------A-T----CA--AGCTATATAT-TT-T-T-----TTA--TTTA-TTAGTAGTTATATGCAAAT---AAAGTAAT---CAAACTACATGTAATTTCCTATTTAATA--ATGTATTCTCCGAGTCGAATACTG--AACGCACC-ATTT---C---TA-A-------------ATCACATGG-CGTTGCACGCG----------------AACAATTTACTTG-AC-AACGTGA--AAGCGTGTATGGCCTGCTGG----CTGT-T---GGC-AG-GACATACCGGTATTCAGTG-ATAAAA-GA-CAGT-GAGCC-AG-A--C--AAC-AGGGTA-GAGAG----AATCACT-TTG-AGCAATGGA--AA--GG--CT----------------ATC-AA-ATGAA-AT--CGCCATTCAGTACGACTACATAA--TTAT--ACTGTAA-GCGAA---ATCCCCGT-CTCCt
gi|5 : CATA-TCC-ACCATCAA-----TGCCATTC-------CTTCATAA--ATAA--GC-ATAA-G-AAA---TTTACCGT-GTTCTCC----T---T---AC-ATTGAGTAG-------ACCA----GTACTCattggtgtttgtaataattttgctcgcgcttgcgcatatccaccatcaatgccattccttcataaataagcataagaaatttaccgtgttctccttacattgagtagaccagtactc
gi|6 : taatattctgatattatcgtagggaaaaaacattacttttatatcaagctatatatttttttatttattagtagttatatgcaaataaagtaatcaaactacatgtaatttcctatttaataatgtattctccgagtcgaatactgaacgcaccatttctaaatcacatggcgttgcacgcgaacaatttacttgacaacgtgaaagcgtgtatggcctgctggctgttggcaggacataccggtattcagtgataaaagacagtgagccagacaacagggtagagagaatcactttgagcaatggaaaggctatcaaatgaaatcgccattcagtacgactacataattatactgtaagcgaaatccccgtctccattggtgtttgtaataattttgctcgcgcttgcgACGTGA--AAGAGTGGGTGGCATGCTTG----CTGT-TTGTGGCTGG-GACACA------TTCAGCG-ATAAAA-
gi|6 : tgacatGCAA-GGA--AGTTGA--ATT-ATAAA-TTTCGTA-TTC-AACTTGAA-AT--CGCCATTtatgcactgcaaggaagttgaattataaatttcgtattcaacttgaaatcgccatttggtacaactacatgttgtaaacaaatattcctcatcgtccatgatgtttcaaaaaatatttttcttgcgcacttgtacacatccaccataaacattcatttttcattattatgcaatagaaaatcgctgttttcccctaaatgtaacattgagtagacctatcccttaaatacctgcataatttgtcaaaattgtcagatcataatatttttcatggtctatcagatacactagctgacaaaattctaggtcttctttttaacacatcaaacaaaattccatttaatactatacatatatacttttaa
gi|6 : tgacatacgtgaaagagtgggtggcatgcttgctgtttgtggctgggacacattcagcgataaaatatgcactC-ACCATAAACAT--T--CATTT--------TTCATTA--TTAT--GC-AATA-G-AAA---ATCGCTGT-TTTCCCC----TAAATGTAAC-ATTGAGTAG-------ACC------TATCCC-TTAAA-TA-CC------TGCATA-ATTTGTCAAAATTGT--CAGAT--CATAAT---A-------TT-----T-TTCATGGTCTATCAGATACACTAGC----TGACAAA--ATT----CT-AGGTCTTCTTTTTAACACA--TCAAAC-AAAATTCCATTT-----AATACTATACA-TATA-TACTTTTAtggtacaactacatgttgtaaacaaatattcctcatcgtccatgatgtttcaaaaaatatttttcttgcgcacttgtacacatccaccataaacattcatttttcattattatgcaatagaaaatcgctgttttcccctaaatgtaacattgagtagacctatcccttaaatacctgcataatttgtcaaaattgtcagatcataatatttttcatggtctatcagatacactagctgacaaaattctaggtcttctttttaacacatcaaacaaaattccatttaatactatacatatatacttttaa
gi|7 : tgacatacgtgaaagagtgggtggcatgcttgctgtttgtggctgggacacattcagcgataaaatatgcactgcaaggaagttgaattataaatttcgtattcaacttgaaatcgccatttggtacaactacatgttgtaaacaaatattcctcatcgtccatgatgtttcaaaaaatatttttcttgcgcacttgtacacatc--TC-GT-G-ACCACGTGA-TGTTGCACGCGG-AAT--------------AATT-ACATG-GC-AACGTGC--AAGCATGGACGACCTGCAGA----ATGT-T---AGC-GG-GAGACA------TTC--------AAA-G--------AGAC-GG-A--A--AAC-AGGGTA-AAGAT----ATCCACT-TTG-AGCAATGGA--AG--GG--ATT----------------TT-AACATGTA-AT--CACCATTa
gi|7 : caaattcgaaatag-AAA---A--ACCGG-TTTCGTC----C---A---AG-ATTTAATAG-------ACGA----GTACTCA-TT-----------------TAAA-AACTGTCAA----GT--CA-----TGC--T---A-------TT-----A-ATGATTGTTTTTCATA--------C----TGACAAAACACA----CA-AGG--TAC-TTTCA--GCG--TCGAAC-AAAATACTGTTTTATC-AATAC--TTCA-CGTA-TACCTTTtagtacgactacatgtatatactgtaaacgaaaccctcatctcccatgatgtttctaatatttttctcgcgcgtatgcgcacgttcaccgtaaatgtaaaaaccggtttcgtccaagatttaatagacgagtactcatttaaaaactgtcaagtcatgctattaatgattgtttttcatactgacaaaacacacaaggtactttcagcgtcgaacaaaatactgttttatcaatacttcacgtatacctttg
gi|8 : caaattcgaaatagtcgtgaccacgtgatgttgcacgcggaataattacatggcaacgtgcaagcatggacgacctgcagaatgttagcgggagacattcaaagagacggaaaacagggtaaagatatccactttgagcaatggaagggattttaacatgtaatcaccatttagtacgactacatgtatatactgtaaacgaaaccctcatctcccatgatgtttctaatatttttctcgcgcgtatgcgcacgttcaccgtaaatgtATAT-GCTG---CAA-ATTTTTACTA-T-GATCGTAGGAATAA--------------A--AAGCATG----TG------TTT----------CA------TA-T----TA--AGCTATACAC-TT-TCTGCAAATTA--TACAATT--GAACTCAAT-AGGATTAAAAAGTAAT---CAAGCTA------ATTTCCTATTTAATC--ATGTATTTTCTGAGTTGGATAGTG--AACACCCC-ATTC---AGA--A-ATAT--TC-AT-A-ATCACATGA-CATTGCACG-------------AAGTAAACAATT-CCATG-GC-GACGTGA--CGCTGCAGATGACCTGTTGG----CTGT-T---GAT-GG-GCCACA------TCCAGCG-ATATAA-GA-CAGT-CAGAC-GG-A--A--AAC-AGGGGA-CAGAG----AACCACG-CTG-AGCAAGAGAAGGG--GG--GTTCA--AA-TTTCATG-TTC-AGCATAAA-AT--CACCATTC-------g
gi|9 : agagctatcatctgtcaaagctaactgtatGTGA-CGTTGCACGCGG-AA---------GTGAACAATT-ACACG-GC-GACGTGA-----------CGACATGCAGG----CTGT-T---TGT-GG-TACAAA------TTCAGCG-ATAAAA-GA-CAAT-CAGAT-CG-ATTA--AAT------------------ACCACT-TTG-AGAAATGGAAGGG--GG--GTTAA--AA-CTTCATG-GTT-AACATGAT-AC--TACCATTC-------ag
gi|9 : -AAG---ATAACGGC-TTTCCCC----T---T---AT-ATCGAGTAG-------AC----------TCC-T-----------G----TATATA-ATTATTCGAAATTGT--CA-----AAT--C---A-------TT-----aatacgactacatgctataaaacgaaattccatttttcattatgtttttaattttaaaaaattatcgcgctcttgcgctcatccatccactgtaaacctcattccttcaagataacggctttccccttatatcgagtagactcctgtatataattattcgaaattgtcaaatcattaa