lowQualScore : 1111 111 222222 11 333 3333333333333333 111 222222222 11 33333 1111 444444444444 11 44444444444444444444 11 111111 11 33333333333333 11 11 11111 3333333333333 1111 33333333333 1111111 1111 22222222222
lowQualScore : 2222 1 555 5 5 77 000 5 666666 6 6 55 6 000 6 8888888888888888 111 666666666 55 8 11111 7777 8 111111111111 55 6 6 6 55555555555555555555 3 8 11 666666 3 3 8 8 11 22222222222222 99 5 5 5 33 55555 6666666666666 6 99 5 9999 5 66 5 0000 5 888 0 5 4 66666666666 5 888 66 5 7777777 0000 5 5 5 33333333333 6 3 66 5 5
lowQualScore : .... . ... . . .. ... . ...... . . .. . ... . ................ ... ......... .. . ..... .... . ............ .. . . . .................... . . .. ...... . . . . .. .............. .. . . . .. ..... ............. . .. . .... . .. . .... . ... . . . ........... . ... .. . ....... .... . . . ........... . . .. . .
lowQualScore : 6666 0 999 3 7 99 000 7 777777 7 7 00 7 222 7 2222222222222222 777 777777777 88 0 00000 0000 0 000000000000 88 7 7 7 88888888888888888888 2 0 00 666666 8 2 0 0 00 66666666666666 33 7 7 7 66 22222 5555555555555 7 22 7 3333 7 99 0 6666 0 888 5 0 1 44444444444 0 888 99 0 0000000 6666 0 0 0 88888888888 0 2 99 0 0
consensus : TGCACC-AT-TTTTGTTTCC-A-GTAAAGA-TTC--AT---G-TTCTA----T-TT-CT-ATT-GCA-TTT-GTG-TT----T-G--T------AACA---AT---------ATTG--TG-GTTT-----GTAA----CA-ATAT------------TGTGGCT--GG-G-A-GAACGCTTTT--GGTT-A-A--TANGT---TCA-T--AT-CCT--ACTTTGC-TA-G--TCAA---GACGCCGN--TTTGTCTCCC--AG-CC-AAT-TTC--TAG----AT-G-TATT-TTTATCT-T--AGTAT-T--AACAT-TTT--T-CGTC----ATTTT-AAATA---AATG-ACAAATTTTTACA-A---C--T--A-ACATGTT---TTTCTGT--TATGA-TTTAC-TG----GG----AAA-C-A-AACA-----------GAGCTGCAATGTTGCC--TTGGA-CT-TGCATA
Reference ( gi|7 ) : TGCACC-AT-TTTTGTTTCC-A-GTAAAGA-TTC--AT---G-TTCTA----T-TT-CT-ATT-GCA-TT--GTG-TT----T-G--T------AACA---AT---------ATTG--TG-GTTT-----GTAA----CA-ATAT------------TGTGGCT--GG-G-A-GAACGCTTTT--GGTT-A-A--TACGT---TCA-T--AT-CTT--ACTTTGC-TA-G--TCAA---GACGCCGG--TTTGTCTCCC--AG-CC-AAT-TTC--TAG----AT-G-TATTATTTA-CT-T--AGTAT-T--AACAT-TTT--T-CGTC----ATTTT-AAATA---AATG-ACAAATTTTTATA-A---C--T--A-ACATGTT---TTTCTGT--TATGA-TTTAC-TG----GG----AAA-C-A-AACA-----------GAGCTACAATGTTGCC--TTGGA-CT-TGCATA
gi|1 : TGCACCCATATTTTGTTTCC-C-GTAAA-A-TTT--AT---G-TTCTA----T-TT-CTTATTTGCA-TTC-GTG-TT----T-A--TGACTTAAACA---ATTGACTGGCTGTTA--TA-ATTC-----GTAA----CAGATAT------------TATGGCTTGGGTG-A-GAACGCTTTT--GGTT-A-ATGTAC-T---TCATT--AT-CCTTGAC-TTGCTTA-G--TCAA---GACG-CGGTCTTTGT-TCCCAAAG-CC-AATCTTC--T
gi|18 : gataagggtttattttcaataaagcaattttatgttaaactatgtaatttaatatgtttaatatatttatgttcattttctcatataaggtttgtttactctacgttcccaaccccttttagagacatgttcaaaccaattttcattatttcggcatgctgatggtaatccagcctcataattggacccgttccaattcacaagccgttcttacctagttttttgtttattaacgtaacatttttgctgtaaggccttcagccaattcagaccaaagcgcgaagcgtccatatcctattgcttttacgtttggaagttgcacggcacaaagaattcacaaaagattattacaaaccgccaccctccactcccgtactccacattcgtaatattttctataccctaaattccggccttttttaTACACC-AT-TTTTGTTTCC-A-GTAAATA-TTC--AT---G-tag
gi|6 : ttttaGCACC------TTGTTTCCCA-GTAAGAA-TTC--AT---G-TTCTAA---T-TT-CT-ATT-GCA-TTTTGTG-TTGTA-T-G--T------AACA---AT---------ATTA--TG-GTTT-----GTCA----CA-GTAT------------TGTGGCT--GG-G-A-G-ACGCTTTT--GGTT-A-A--TAAGT---T-A-TTAATACTT--ACTTTAC-TAGG--TCAA---GACTCCGT--ATTGTCTCCCT-CG-CCTAAT-TTCT-TAG----AT---T-CTATTTATCTGT--AGTAT-TCCAGCTC-TTT--TACGTC----ATTTT-AAATACCCAATGAACAATTTTTCACA-AAC-T--T--ACACAGGTT---TTTCTGTTCTATGA-TTTAC-TG----GG----AAA-C-A-AACA-----------GAGCTGCAAGGTAGCCGTTTGGA-TT-TGCATA
gi|2 : GCATC-AT-TTTGCTTTCC-A-TTAAAGA-T-C--AT---G-TTCTA----T-TTTCT-AT--GCA-TTT-GTG-TT----TTG--T------AACA---AT---------ATTG--TG-GTTTTG---GTAA----CC-ATAT------------TGTGG-T--GG-G-ATGAAGGCCTTT--acatggt
gi|17 : gttcaaactttaattaattgttttcatatttattcatctcatataaggtttttttatgtttgatacttttacgctcgcatttctaaaccaatatatttttccgtggcatgcatgatgtattcagcctcataatggtaccgtcaaattacaaagccgtccttacctatgttcttttgtttaattacgtcaatatttttgtgtgtaaaggctttccatccatcagaccaagccgcgaagcgtcattcttttgtttagtttgagtgtgcaggcacaaagaattcacaaaagaatacgcaaccgccaccggtccactgccgtgcctctcattcgtaatttttctatctccacttttttcggctttttcttaaCACC-AT-TATTGTTTCC-A-GTAATGA-TTC--AT---G-TTGTA------TT-CT-GTC-GCATTT--ATGTTT----T-G--T------AACA---AT---------ATTG--Tttttaggcaccatttttgtttctcagtaaag
gi|8 : tttattGTTTCC-A-GTAAAGA-TTC--AT---G-CTATA----T-TT-CT-ATT-GCA-TT---TG-TTGCTTT-G--T------GACA---AC---------ATTAATTATGTTT-----GTAA----CA-ATAT------------TGTGGCT--GG-G-A-GAACGCTTTT---------------------CA-T--AT-CGT--GCTTTGC-TA-G--TCAA---GACACTGT--TTTGTCTCCC--AG-CC-AAT-TTT--TAT----AT-G-TG-CATT----T-T--AATAT-T--A------------CGTC----ATTTT-CAATA---ACAG-ACGAATTTTTACA-C---CT-T--A-ACATGTT---TTTCTGT--TATGA-TGTACATGATATGG----TAA-C-A-AACA-----------GAGCTGCAATGTTGCC--TTGGA-CT-
gi|3 : TTCC-ACGTAAAAAATTCTTATCGCGCTTCTAGGTGTATT-CT-ATTTGCA-TTT-GTG-TT----T-AGAT------AAAATTTAT---------ATTGA-TG-GGTTATAGGGTAAACCTCG-ACATATCAAAGTTAAATGTGGCTT-GG-GTA-AAACGCTTTCTCGGTTCACA--TACGTATTTCA-T--AT-GCT--ACCTT---TA-GGTCCAATGGAACACCGGG-TTTGTCTCCCC-AGTCC-AAT-TTTCTTAG----ATTG-TATT--TTA-TT-TTCAGTTTAT--ACCAT-TTTATT-CGTCCAATATTTTTAAATA---AAAT-ACAAATTTTTACA-AATTT--T--A-ACCAGTT---TTTCTGT--TATGATTTTAC-TGC---GG----AAATC-ACAATATATTCATTCGGAAGCTG-AATG-TGCC--TTGGATCTGTGCATAgatgtgtagcatagcttt
gi|10 : tatgcagccaatttatatgagttcGGCT--GG-G-A-GAACGCTTTT--CTTT-A-A--GAGGA---TTA-T--AT-CT---ATTTTGC-TA-G--T-----------------TTGTCTCCC--AG-TC-AAT-TTC--TAAAATTAT-G-CATT-TTTATCT-T--GGTAT-T--CACATGTTT--T-CTTC----ATTTT-AAATA---AATG-ATTTTTTTTTCTACA---CCTT--A-ACATGTTTTCTTTCTGT--TTTGA-TTTAC-TT----GGAAAAAAA-G-A-AACA-----------GAGATGCAACG-------TTGGA-CT-TATATAacatagagtcgtaaaattttataacataaattaaggtt
gi|13 : TTCC--AG-CC-ATT-ATC--TAT----AT-GGTATT--TTATCA-T--TGTAT-T--AACAT-TAT--T-GGTC----ATTGT-AAA--------------ATCCTTACA-A---C--TGTA-ACATGTT---TCT-TGT--TAT----------------------AA-C-A-ACCA-----------GAGCTGCAATGTTGCC--TTGGA-CT-TACTTAgcacggtttttaa
gi|12 : C--AG-CC-AAT-TTC--TAG----AT-G-TATT-TTTATCT-T--AGTAT-T--CACAT-TTT--T-CGTC----ATTTT-AAATA---AATG-ACAAATTTTTACA-A---CT-T--A-ACATGTT---TTTCTGT--TATGA-TTTAC-TG----GG----AAA-CAA-AACA-----------GAGCTGCAATGTTGCC--TTGGA-TT-TGCATAgcacggttttt
gi|14 : GTAT-T--AACAT-TTT--T-CGTC----ATTTT-AAATA---AATG-ACAAATTTTTACA-A---C--TT-A-ACATGTT---TTTCTGT--TATGA-TTTAC-TG----GG----AAA-C-A-AACA-----------GAGCTGCAATGTTGCC--TTGGA-CT-TGCATAacatggttt
gi|15 : T--T-CGTC----AAATT-TAACA---GATG-ACAAATATTTACA-C---C--TT-C-GCGTGTT---TTTCTGT--TATGA-TTTAC-GT----GG----AAA-C-A-AACA-----------GAGCTGCAATGTTGCA--TTGGA-CT-TGTATacatggttttaaac
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): AAATAAGGTTTATTTTTTAATAAAGCAATTCTATGTTTTAAGATCTTGTAAATTATTGTTTGTTAACATTATTTAATGTCATCTCATATAAGGGTCATAGTTATTTTTTGTGTTGTATTTTTTTACGCTCCACCCTGAGATTCAAATTCTTCGGGCAATGCTGATGGTAATCCAGCCTCATAATGGACCCGTCCAAATTCACAAGCCGTTCTTCCTAGTTCTTTTGTTTATTACGTAATATTTTGTGTGTAAGGCTTTCAGCAATCAGATCAAAGCCGAAGCGTCATTCTTTTGTTTTAGTTTGAGTGTGCAGGCACAAAGAAATTCACAAAAGAATACGCAACCGCCACACTCCACTCCGTCCTCCACATTCGTAATATTCTATAACCGTAAATTTCATTTTGAATTTCATTGTGCCTTTT
Unaligned ( gi|5 ): AAATTAAGGTTTGATGTGTTTTTTGAATTAAAGCATAATTTATGTTTAAAACTTGTAATAATTGTTTTAATATTTTATGTAGATCTCAATATAATGTGTTTTTAGAATGGTTGATTTCATTAACGCACCCCAACCCTTTAGAAACGCAATTATCGAAACAATAACTCATTTTTCGGGGCATGCTGATGGTAATTCAGCCGTCATATGACCCGATCCGCAAATTCTCAAGCCCGTTCTTTTACCTTAGCTCTTTGTTATCTTAAGCGTAATATTTTTGTGGGTGTGTTAGGCTTTCAGCCAATTACAACACCAACGCCTCGAAGGCGTCATTCCTTATGTTTAGGTTGGAGTGTCATGGCACAAAGGAAATTCA
Unaligned ( gi|9 ): AAAATAAGGTTTATTTTTTAAGTAATGCATATTTAGTGTTAAATCACTTGAAGATATAAATTTTGTTTAGTAATATTCATAGTCAATCTCATATAGGTTTTCCTGTGTTTTTATGCAGTATATTTTTTATCCTCACTCGCAACCTCTATATTTTGATGAATTCATTTGATAGTTGAATATTAATAGTCCGTCTCATGAATGGACCCGTCCAAATTTTTAACAAGCCGTTATCTTCGACTCGTTTCTTT
Unaligned ( gi|11 ): AGTTTCAGTCAATCAGATCACCGCGCAAAGCGTCTTTAATTTAGTTTGGAGTGCGGTCACAAAAAAGTCACGAAAGAAAAAGCAACCTCCACCTCCACCACATTTGTACATCGATATGACCTACATCAATTTTAATTTTAATTGGCCTTTTTTGAGCACTATT
Unaligned ( gi|16 ): TCCTAATTCATGACCCGTTTTTACCCGGTTCTTTGTTTATGACATAATAATTTATGTGTAAGGCTTTCAGGCAATCAGATCAAAGCGC
Alignments
lowQualScore : 2222 1 1 111111111111111 111 222222222 11 22222 1111 333333333333 11 111 1111111 111 111 11 11 1111 11111 22222222 1111 22222222222
lowQualScore : 5 5 4 4 4 1 5 66 888 5 3333 5 5 1 55 5 1 666666666666666 000 222222222 33 6 55555 4444 6 444444444444 33 5 5 5 000 888 7777777 1 6 99 888 99 1 1 6 6 99 111 3 1 666 66 5 5 5 11 2222 888 5 7 5 5 5 66 2 5 66 4 9999 4 777 4 0 11111 66666666 4 777 66 4 4 3333 9999 4 4 4 11111111111 1 66 4 4
lowQualScore : . . . . . . . .. ... . .... . . . .. . . ............... ... ......... .. . ..... .... . ............ .. . . . ... ... ....... . . .. ... .. . . . . .. ... . . ... .. . . . .. .... ... . . . . . .. . . .. . .... . ... . . ..... ........ . ... .. . . .... .... . . . ........... . .. . .
lowQualScore : 7 7 4 4 4 9 0 99 888 0 6666 7 7 4 99 7 4 666666666666666 000 999999999 66 7 88888 2222 7 222222222222 66 7 7 7 444 333 8888888 0 7 22 777 22 7 0 7 7 22 777 7 0 777 99 0 0 0 99 1111 666 7 1 7 7 0 99 0 0 11 4 4444 4 888 4 8 11111 88888888 4 888 11 4 4 9999 4444 4 4 4 11111111111 9 11 4 4
consensus : TGCACC-AT-TTTTGTTTC-C-A-GTAAAGA-TTC--AT---G-TTCTA----T-TTCT-ATT-GCATTT-GT-G-TT---T-G--T------AACA---AT---------ATTG--TG-GTTT-----GTAA----CA-ATAT------------TGTGGCT--GG-G-A-GAACGCTTTT--GGTT-A-ATANG-T---TCA-T--AT-CCT--ACTTTGC-TA-G--TCAA---GACGCCG-N-TTTGTCTCCC--AG-CC-AAT-TTC--TAG----AT-G-TATT-TTTATCT-T-AGTAT-T--AACAT-TTT--T-CGTC----ATTTT-AAATA---AATG-ACAAATTTT-----TACAA---C-T--A-ACATGTT---TTTCTGT--TATGA-TTTAC-TG----GG----AAA-C-A-AACA-----------GAGCTGCAATGTTGCC--TTGGA-CT-TGCATA
Reference ( family-3716 ) : TGCACC-AT-TTTTGTTTC-C-A-GTAAAGA-TTC--AT---G-TTCTA----T-TTCT-ATT-GCATTT-GT-G-TT---T-G--T------AACA---AT---------ATTG--TG-GTTT-----GTAA----CA-ATAT------------TGTGGCT--GG-G-A-GAACGCTTTT--GGTT-A-ATANG-T---TCA-T--AT-CCT--ACTTTGC-TA-G--TCAA---GACGCCG-N-TTTGTCTCCC--AG-CC-AAT-TTC--TAG----AT-G-TATT-TTTATCT-T-AGTAT-T--AACAT-TTT--T-CGTC----ATTTT-AAATA---AATG-ACAAATTTT-----TACAA---C-T--A-ACATGTT---TTTCTGT--TATGA-TTTAC-TG----GG----AAA-C-A-AACA-----------GAGCTGCAATGTTGCC--TTGGA-CT-TGCATA
gi|1 : TGCACCCATATTTTGTTTC-C-C-GTAAA-A-TTT--AT---G-TTCTA----T-TTCTTATTTGCATTC-GT-G-TT---T-A--TGACTTAAACA---ATTGACTGGCTGTTA--TA-ATTC-----GTAA----CAGATAT------------TATGGCTTGGGTG-A-GAACGCTTTT--GGTT-A-ATGTACT---TCATT--AT-CCTTGAC-TTGCTTA-G--TCAA---GACGCGGTC-TTTGT-TCCCAAAG-CC-AATCTTC--T
gi|10 : gataagggtttattttcaataaagcaattttatgttaaactatgtaatttaatatgtttaatatatttatgttcattttctcatataaggtttgtttactctacgttcccaaccccttttagagacatgttcaaaccaattttcattatttcggcatgctgatggtaatccagcctcataattggacccgttccaattcacaagccgttcttacctagttttttgtttattaacgtaacatttttgctgtaaggccttcagccaattcagaccaaagcgcgaagcgtccatatcctattgcttttacgtttggaagttgcacggcacaaagaattcacaaaagattattacaaaccgccaccctccactcccgtactccacattcgtaatattttctataccctaaattccggccttttttaGGCT--GG-G-A-GAACGCTTTT--CTTT-A-AGAGG-A---TTA-T--AT-C-T--ATTTTGC-TA-G--T-----------------TTGTCTCCC--AG-TC-AAT-TTC--TAAAATTAT-G-CATT-TTTATCT-T-GGTAT-T--CACATGTTT--T-CTTC----ATTTT-AAATA---AATG-AT---TTTTTTTTCTACAC---CTT--A-ACATGTTTTCTTTCTGT--TTTGA-TTTAC-TT----GGAAAAAAA-G-A-AACA-----------GAGATGCAACG-------TTGGA-CT-TATATAtag
gi|12 : C--AG-CC-AAT-TTC--TAG----AT-G-TATT-TTTATCT-T-AGTAT-T--CACAT-TTT--T-CGTC----ATTTT-AAATA---AATG-ACAAATTTT-----TACAA---CTT--A-ACATGTT---TTTCTGT--TATGA-TTTAC-TG----GG----AAA-CAA-AACA-----------GAGCTGCAATGTTGCC--TTGGA-TT-TGCATAgcacggtttttaa
gi|13 : TTCC--AG-CC-ATT-ATC--TAT----AT-GGTATT-TT-ATCA-T-TGTAT-T--AACAT-TAT--T-GGTC----ATTGT-AAA--------------ATCCT-----TACAA---C-TGTA-ACATGTT---TCT-TGT--TAT----------------------AA-C-A-ACCA-----------GAGCTGCAATGTTGCC--TTGGA-CT-TACTTAacatggttt
gi|14 : GTAT-T--AACAT-TTT--T-CGTC----ATTTT-AAATA---AATG-ACAAATTTT-----TACAA---C-TT-A-ACATGTT---TTTCTGT--TATGA-TTTAC-TG----GG----AAA-C-A-AACA-----------GAGCTGCAATGTTGCC--TTGGA-CT-TGCATAgcacggttttt
gi|15 : T--T-CGTC----AAATT-TAACA---GATG-ACAAATATT-----TACAC---C-TT-C-GCGTGTT---TTTCTGT--TATGA-TTTAC-GT----GG----AAA-C-A-AACA-----------GAGCTGCAATGTTGCA--TTGGA-CT-TGTATacatggttttaaac
gi|17 : CACC-AT-TATTGTTTC-C-A-GTAATGA-TTC--AT---G-TTGTA----T-T-CT-GTC-GCATTT-AT-G-TT---TTG--T------AACA---AT---------ATTG--T
gi|18 : tttattTACACC-AT-TTTTGTTTC-C-A-GTAAATA-TTC--AT---G-
gi|2 : ttttaGCATC-AT-TTTGCTTTC-C-A-TTAAAGA-T-C--AT---G-TTCTAT---T-TTCT-A-T-GCATTT-GT-GTTT---T-G--T------AACA---AT---------ATTG--TG-GTTTTG---GTAA----CC-ATAT------------TGTGG-T--GG-G-ATGAAGGCCTTT--
gi|2 : gttcaaactttaattaattgttttcatatttattcatctcatataaggtttttttatgtttgatacttttacgctcgcatttctaaaccaatatatttttccgtggcatgcatgatgtattcagcctcataatggtaccgtcaaattacaaagccgtccttacctatgttcttttgtttaattacgtcaatatttttgtgtgtaaaggctttccatccatcagaccaagccgcgaagcgtcattcttttgtttagtttgagtgtgcaggcacaaagaattcacaaaagaatacgcaaccgccaccggtccactgccgtgcctctcattcgtaatttttctatctccacttttttcggctttttcttaaGCACC-AT-TTTTGTTTCTC-A-GTAAAGttttaggcaccatttttgtttctcagtaaag
gi|3 : gttcaaactttaattaattgttttcatatttattcatctcatataaggtttttttatgtttgatacttttacgctcgcatttctaaaccaatatatttttccgtggcatgcatgatgtattcagcctcataatggtaccgtcaaattacaaagccgtccttacctatgttcttttgtttaattacgtcaatatttttgtgtgtaaaggctttccatccatcagaccaagccgcgaagcgtcattcttttgtttagtttgagtgtgcaggcacaaagaattcacaaaagaatacgcaaccgccaccggtccactgccgtgcctctcattcgtaatttttctatctccacttttttcggctttttcttaagcatcattttgctttccattaaagatcatgttctattttctatgcatttgtgttttgtaacaatattgtggttttggtaaccatattgtggtgggatgaaggcctttttttagTTC-C-ACGTAAAAAATTCTTATCGCGCTTCTAGGTGTATTCT-ATTTGCATTT-GT-G-TT---T-AGAT------AAAATTTAT---------ATTGA-TG-GGTTATAGGGTAAACCTCG-ACATATCAAAGTTAAATGTGGCTT-GG-GTA-AAACGCTTTCTCGGTTCACATACG-TATTTCA-T--AT-GCT--ACCTT---TA-GGTCCAATGGAACACCG-GGTTTGTCTCCCC-AGTCC-AAT-TTTCTTAG----ATTG-TATT-TT-ATTT-TCAGTTTAT--ACCAT-TTTATT-CGTCCAATATTTTTAAATA---AAAT-ACAAATTTT-----TACAAATTT-T--A-ACCAGTT---TTTCTGT--TATGATTTTAC-TGC---GG----AAATC-ACAATATATTCATTCGGAAGCTG-AATG-TGCC--TTGGATCTGTGCATA
gi|6 : tatgcagccaatttatatgagttcGCACC------TTGTTTC-CCA-GTAAGAA-TTC--AT---G-TTCTAA---T-TTCT-ATT-GCATTTTGT-G-TTGTAT-G--T------AACA---AT---------ATTA--TG-GTTT-----GTCA----CA-GTAT------------TGTGGCT--GG-G-A-G-ACGCTTTT--GGTT-A-ATAAG-T---T-A-TTAATACTT--ACTTTAC-TAGG--TCAA---GACTCCG-T-ATTGTCTCCCT-CG-CCTAAT-TTCT-TAG----AT---TCTA-TTTATCTGT-AGTAT-TCCAGCTC-TTT--TACGTC----ATTTT-AAATACCCAATGAACAATTTTT-----CACAAAC-T-T--ACACAGGTT---TTTCTGTTCTATGA-TTTAC-TG----GG----AAA-C-A-AACA-----------GAGCTGCAAGGTAGCCGTTTGGA-TT-TGCATAacatagagtcgtaaaattttataacataaattaaggtt
gi|7 : TGCACC-AT-TTTTGTTTC-C-A-GTAAAGA-TTC--AT---G-TTCTA----T-TTCT-ATT-GCATT--GT-G-TT---T-G--T------AACA---AT---------ATTG--TG-GTTT-----GTAA----CA-ATAT------------TGTGGCT--GG-G-A-GAACGCTTTT--GGTT-A-ATACG-T---TCA-T--AT-CTT--ACTTTGC-TA-G--TCAA---GACGCCG-G-TTTGTCTCCC--AG-CC-AAT-TTC--TAG----AT-G-TATTATTTA-CT-T-AGTAT-T--AACAT-TTT--T-CGTC----ATTTT-AAATA---AATG-ACAAATTTT-----TATAA---C-T--A-ACATGTT---TTTCTGT--TATGA-TTTAC-TG----GG----AAA-C-A-AACA-----------GAGCTACAATGTTGCC--TTGGA-CT-TGCATAacatggt
gi|8 : GTTTC-C-A-GTAAAGA-TTC--AT---G-CTATA----T-TTCT-ATT-GCATTT-GTTGCTT---T-G--T------GACA---AC---------ATTAATTATGTTT-----GTAA----CA-ATAT------------TGTGGCT--GG-G-A-GAACGCTTTT--------------------CA-T--AT-CGT--GCTTTGC-TA-G--TCAA---GACACTG-T-TTTGTCTCCC--AG-CC-AAT-TTT--TAT----AT-G-TG-----CATTT-T-AATAT-T--A------------CGTC----ATTTT-CAATA---ACAG-ACGAATTTT-----TACAC---CTT--A-ACATGTT---TTTCTGT--TATGA-TGTACATGATATGG----TAA-C-A-AACA-----------GAGCTGCAATGTTGCC--TTGGA-CT-
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): AAATAAGGTTTATTTTTTAATAAAGCAATTCTATGTTTTAAGATCTTGTAAATTATTGTTTGTTAACATTATTTAATGTCATCTCATATAAGGGTCATAGTTATTTTTTGTGTTGTATTTTTTTACGCTCCACCCTGAGATTCAAATTCTTCGGGCAATGCTGATGGTAATCCAGCCTCATAATGGACCCGTCCAAATTCACAAGCCGTTCTTCCTAGTTCTTTTGTTTATTACGTAATATTTTGTGTGTAAGGCTTTCAGCAATCAGATCAAAGCCGAAGCGTCATTCTTTTGTTTTAGTTTGAGTGTGCAGGCACAAAGAAATTCACAAAAGAATACGCAACCGCCACACTCCACTCCGTCCTCCACATTCGTAATATTCTATAACCGTAAATTTCATTTTGAATTTCATTGTGCCTTTT
Unaligned ( gi|5 ): AAATTAAGGTTTGATGTGTTTTTTGAATTAAAGCATAATTTATGTTTAAAACTTGTAATAATTGTTTTAATATTTTATGTAGATCTCAATATAATGTGTTTTTAGAATGGTTGATTTCATTAACGCACCCCAACCCTTTAGAAACGCAATTATCGAAACAATAACTCATTTTTCGGGGCATGCTGATGGTAATTCAGCCGTCATATGACCCGATCCGCAAATTCTCAAGCCCGTTCTTTTACCTTAGCTCTTTGTTATCTTAAGCGTAATATTTTTGTGGGTGTGTTAGGCTTTCAGCCAATTACAACACCAACGCCTCGAAGGCGTCATTCCTTATGTTTAGGTTGGAGTGTCATGGCACAAAGGAAATTCA
Unaligned ( gi|9 ): AAAATAAGGTTTATTTTTTAAGTAATGCATATTTAGTGTTAAATCACTTGAAGATATAAATTTTGTTTAGTAATATTCATAGTCAATCTCATATAGGTTTTCCTGTGTTTTTATGCAGTATATTTTTTATCCTCACTCGCAACCTCTATATTTTGATGAATTCATTTGATAGTTGAATATTAATAGTCCGTCTCATGAATGGACCCGTCCAAATTTTTAACAAGCCGTTATCTTCGACTCGTTTCTTT
Unaligned ( gi|11 ): AGTTTCAGTCAATCAGATCACCGCGCAAAGCGTCTTTAATTTAGTTTGGAGTGCGGTCACAAAAAAGTCACGAAAGAAAAAGCAACCTCCACCTCCACCACATTTGTACATCGATATGACCTACATCAATTTTAATTTTAATTGGCCTTTTTTGAGCACTATT
Unaligned ( gi|16 ): TCCTAATTCATGACCCGTTTTTACCCGGTTCTTTGTTTATGACATAATAATTTATGTGTAAGGCTTTCAGGCAATCAGATCAAAGCGC
Alignments
lowQualScore : 2222 1 1 111111111111111 111 222222222 11 22222 1111 333333333333 11 111 1111111 111 111 11 11 1111 11111 22222222 1111 22222222222
lowQualScore : 5 5 4 4 4 1 5 66 888 5 3333 5 5 1 55 5 1 666666666666666 000 222222222 33 6 55555 4444 6 444444444444 33 5 5 5 000 888 7777777 1 6 99 888 99 1 1 6 6 99 111 3 1 666 66 5 5 5 11 2222 888 5 7 5 5 5 66 2 5 66 4 9999 4 777 4 0 11111 66666666 4 777 66 4 4 3333 9999 4 4 4 11111111111 1 66 4 4
lowQualScore : . . . . . . . .. ... . .... . . . .. . . ............... ... ......... .. . ..... .... . ............ .. . . . ... ... ....... . . .. ... .. . . . . .. ... . . ... .. . . . .. .... ... . . . . . .. . . .. . .... . ... . . ..... ........ . ... .. . . .... .... . . . ........... . .. . .
lowQualScore : 7 7 4 4 4 9 0 99 888 0 6666 7 7 4 99 7 4 666666666666666 000 999999999 66 7 88888 2222 7 222222222222 66 7 7 7 444 333 8888888 0 7 22 777 22 7 0 7 7 22 777 7 0 777 99 0 0 0 99 1111 666 7 1 7 7 0 99 0 0 11 4 4444 4 888 4 8 11111 88888888 4 888 11 4 4 9999 4444 4 4 4 11111111111 9 11 4 4
consensus : TGCACC-AT-TTTTGTTTC-C-A-GTAAAGA-TTC--AT---G-TTCTA----T-TTCT-ATT-GCATTT-GT-G-TT---T-G--T------AACA---AT---------ATTG--TG-GTTT-----GTAA----CA-ATAT------------TGTGGCT--GG-G-A-GAACGCTTTT--GGTT-A-ATANG-T---TCA-T--AT-CCT--ACTTTGC-TA-G--TCAA---GACGCCG-N-TTTGTCTCCC--AG-CC-AAT-TTC--TAG----AT-G-TATT-TTTATCT-T-AGTAT-T--AACAT-TTT--T-CGTC----ATTTT-AAATA---AATG-ACAAATTTT-----TACAA---C-T--A-ACATGTT---TTTCTGT--TATGA-TTTAC-TG----GG----AAA-C-A-AACA-----------GAGCTGCAATGTTGCC--TTGGA-CT-TGCATA
Reference ( family-3716 ) : TGCACC-AT-TTTTGTTTC-C-A-GTAAAGA-TTC--AT---G-TTCTA----T-TTCT-ATT-GCATTT-GT-G-TT---T-G--T------AACA---AT---------ATTG--TG-GTTT-----GTAA----CA-ATAT------------TGTGGCT--GG-G-A-GAACGCTTTT--GGTT-A-ATANG-T---TCA-T--AT-CCT--ACTTTGC-TA-G--TCAA---GACGCCG-N-TTTGTCTCCC--AG-CC-AAT-TTC--TAG----AT-G-TATT-TTTATCT-T-AGTAT-T--AACAT-TTT--T-CGTC----ATTTT-AAATA---AATG-ACAAATTTT-----TACAA---C-T--A-ACATGTT---TTTCTGT--TATGA-TTTAC-TG----GG----AAA-C-A-AACA-----------GAGCTGCAATGTTGCC--TTGGA-CT-TGCATA
gi|1 : TGCACCCATATTTTGTTTC-C-C-GTAAA-A-TTT--AT---G-TTCTA----T-TTCTTATTTGCATTC-GT-G-TT---T-A--TGACTTAAACA---ATTGACTGGCTGTTA--TA-ATTC-----GTAA----CAGATAT------------TATGGCTTGGGTG-A-GAACGCTTTT--GGTT-A-ATGTACT---TCATT--AT-CCTTGAC-TTGCTTA-G--TCAA---GACGCGGTC-TTTGT-TCCCAAAG-CC-AATCTTC--T
gi|10 : gataagggtttattttcaataaagcaattttatgttaaactatgtaatttaatatgtttaatatatttatgttcattttctcatataaggtttgtttactctacgttcccaaccccttttagagacatgttcaaaccaattttcattatttcggcatgctgatggtaatccagcctcataattggacccgttccaattcacaagccgttcttacctagttttttgtttattaacgtaacatttttgctgtaaggccttcagccaattcagaccaaagcgcgaagcgtccatatcctattgcttttacgtttggaagttgcacggcacaaagaattcacaaaagattattacaaaccgccaccctccactcccgtactccacattcgtaatattttctataccctaaattccggccttttttaGGCT--GG-G-A-GAACGCTTTT--CTTT-A-AGAGG-A---TTA-T--AT-C-T--ATTTTGC-TA-G--T-----------------TTGTCTCCC--AG-TC-AAT-TTC--TAAAATTAT-G-CATT-TTTATCT-T-GGTAT-T--CACATGTTT--T-CTTC----ATTTT-AAATA---AATG-AT---TTTTTTTTCTACAC---CTT--A-ACATGTTTTCTTTCTGT--TTTGA-TTTAC-TT----GGAAAAAAA-G-A-AACA-----------GAGATGCAACG-------TTGGA-CT-TATATAtag
gi|12 : C--AG-CC-AAT-TTC--TAG----AT-G-TATT-TTTATCT-T-AGTAT-T--CACAT-TTT--T-CGTC----ATTTT-AAATA---AATG-ACAAATTTT-----TACAA---CTT--A-ACATGTT---TTTCTGT--TATGA-TTTAC-TG----GG----AAA-CAA-AACA-----------GAGCTGCAATGTTGCC--TTGGA-TT-TGCATAgcacggtttttaa
gi|13 : TTCC--AG-CC-ATT-ATC--TAT----AT-GGTATT-TT-ATCA-T-TGTAT-T--AACAT-TAT--T-GGTC----ATTGT-AAA--------------ATCCT-----TACAA---C-TGTA-ACATGTT---TCT-TGT--TAT----------------------AA-C-A-ACCA-----------GAGCTGCAATGTTGCC--TTGGA-CT-TACTTAacatggttt
gi|14 : GTAT-T--AACAT-TTT--T-CGTC----ATTTT-AAATA---AATG-ACAAATTTT-----TACAA---C-TT-A-ACATGTT---TTTCTGT--TATGA-TTTAC-TG----GG----AAA-C-A-AACA-----------GAGCTGCAATGTTGCC--TTGGA-CT-TGCATAgcacggttttt
gi|15 : T--T-CGTC----AAATT-TAACA---GATG-ACAAATATT-----TACAC---C-TT-C-GCGTGTT---TTTCTGT--TATGA-TTTAC-GT----GG----AAA-C-A-AACA-----------GAGCTGCAATGTTGCA--TTGGA-CT-TGTATacatggttttaaac
gi|17 : CACC-AT-TATTGTTTC-C-A-GTAATGA-TTC--AT---G-TTGTA----T-T-CT-GTC-GCATTT-AT-G-TT---TTG--T------AACA---AT---------ATTG--T
gi|18 : tttattTACACC-AT-TTTTGTTTC-C-A-GTAAATA-TTC--AT---G-
gi|2 : ttttaGCATC-AT-TTTGCTTTC-C-A-TTAAAGA-T-C--AT---G-TTCTAT---T-TTCT-A-T-GCATTT-GT-GTTT---T-G--T------AACA---AT---------ATTG--TG-GTTTTG---GTAA----CC-ATAT------------TGTGG-T--GG-G-ATGAAGGCCTTT--
gi|2 : gttcaaactttaattaattgttttcatatttattcatctcatataaggtttttttatgtttgatacttttacgctcgcatttctaaaccaatatatttttccgtggcatgcatgatgtattcagcctcataatggtaccgtcaaattacaaagccgtccttacctatgttcttttgtttaattacgtcaatatttttgtgtgtaaaggctttccatccatcagaccaagccgcgaagcgtcattcttttgtttagtttgagtgtgcaggcacaaagaattcacaaaagaatacgcaaccgccaccggtccactgccgtgcctctcattcgtaatttttctatctccacttttttcggctttttcttaaGCACC-AT-TTTTGTTTCTC-A-GTAAAGttttaggcaccatttttgtttctcagtaaag
gi|3 : gttcaaactttaattaattgttttcatatttattcatctcatataaggtttttttatgtttgatacttttacgctcgcatttctaaaccaatatatttttccgtggcatgcatgatgtattcagcctcataatggtaccgtcaaattacaaagccgtccttacctatgttcttttgtttaattacgtcaatatttttgtgtgtaaaggctttccatccatcagaccaagccgcgaagcgtcattcttttgtttagtttgagtgtgcaggcacaaagaattcacaaaagaatacgcaaccgccaccggtccactgccgtgcctctcattcgtaatttttctatctccacttttttcggctttttcttaagcatcattttgctttccattaaagatcatgttctattttctatgcatttgtgttttgtaacaatattgtggttttggtaaccatattgtggtgggatgaaggcctttttttagTTC-C-ACGTAAAAAATTCTTATCGCGCTTCTAGGTGTATTCT-ATTTGCATTT-GT-G-TT---T-AGAT------AAAATTTAT---------ATTGA-TG-GGTTATAGGGTAAACCTCG-ACATATCAAAGTTAAATGTGGCTT-GG-GTA-AAACGCTTTCTCGGTTCACATACG-TATTTCA-T--AT-GCT--ACCTT---TA-GGTCCAATGGAACACCG-GGTTTGTCTCCCC-AGTCC-AAT-TTTCTTAG----ATTG-TATT-TT-ATTT-TCAGTTTAT--ACCAT-TTTATT-CGTCCAATATTTTTAAATA---AAAT-ACAAATTTT-----TACAAATTT-T--A-ACCAGTT---TTTCTGT--TATGATTTTAC-TGC---GG----AAATC-ACAATATATTCATTCGGAAGCTG-AATG-TGCC--TTGGATCTGTGCATA
gi|6 : tatgcagccaatttatatgagttcGCACC------TTGTTTC-CCA-GTAAGAA-TTC--AT---G-TTCTAA---T-TTCT-ATT-GCATTTTGT-G-TTGTAT-G--T------AACA---AT---------ATTA--TG-GTTT-----GTCA----CA-GTAT------------TGTGGCT--GG-G-A-G-ACGCTTTT--GGTT-A-ATAAG-T---T-A-TTAATACTT--ACTTTAC-TAGG--TCAA---GACTCCG-T-ATTGTCTCCCT-CG-CCTAAT-TTCT-TAG----AT---TCTA-TTTATCTGT-AGTAT-TCCAGCTC-TTT--TACGTC----ATTTT-AAATACCCAATGAACAATTTTT-----CACAAAC-T-T--ACACAGGTT---TTTCTGTTCTATGA-TTTAC-TG----GG----AAA-C-A-AACA-----------GAGCTGCAAGGTAGCCGTTTGGA-TT-TGCATAacatagagtcgtaaaattttataacataaattaaggtt
gi|7 : TGCACC-AT-TTTTGTTTC-C-A-GTAAAGA-TTC--AT---G-TTCTA----T-TTCT-ATT-GCATT--GT-G-TT---T-G--T------AACA---AT---------ATTG--TG-GTTT-----GTAA----CA-ATAT------------TGTGGCT--GG-G-A-GAACGCTTTT--GGTT-A-ATACG-T---TCA-T--AT-CTT--ACTTTGC-TA-G--TCAA---GACGCCG-G-TTTGTCTCCC--AG-CC-AAT-TTC--TAG----AT-G-TATTATTTA-CT-T-AGTAT-T--AACAT-TTT--T-CGTC----ATTTT-AAATA---AATG-ACAAATTTT-----TATAA---C-T--A-ACATGTT---TTTCTGT--TATGA-TTTAC-TG----GG----AAA-C-A-AACA-----------GAGCTACAATGTTGCC--TTGGA-CT-TGCATAacatggt
gi|8 : GTTTC-C-A-GTAAAGA-TTC--AT---G-CTATA----T-TTCT-ATT-GCATTT-GTTGCTT---T-G--T------GACA---AC---------ATTAATTATGTTT-----GTAA----CA-ATAT------------TGTGGCT--GG-G-A-GAACGCTTTT--------------------CA-T--AT-CGT--GCTTTGC-TA-G--TCAA---GACACTG-T-TTTGTCTCCC--AG-CC-AAT-TTT--TAT----AT-G-TG-----CATTT-T-AATAT-T--A------------CGTC----ATTTT-CAATA---ACAG-ACGAATTTT-----TACAC---CTT--A-ACATGTT---TTTCTGT--TATGA-TGTACATGATATGG----TAA-C-A-AACA-----------GAGCTGCAATGTTGCC--TTGGA-CT-
blockSeqs : . . T C C G A TT CGC C GGTG A . T TT T T GTATGT TTT . AT T ATAGG ACCT . ATCAAAGTTAAA T . T T TCG CAC CGTATT T . TA ACT . T G . G GT TGG A C GG C T T . CT . GG A T G C A CC A . AT A CAAT T CCC A . ATTTT C . TC T A ATAT . T A C TATTCATTCGG T GT T G
blockSeqs : . . . . . T . . . . T . . . T . C TAGAT . . A . TG . . . . . . . C A GGA C . . GC . C A . . . . T C T T . . . T . TG . T . . . . A . . . . . . . . CTGT . . . . . C . . . . . T . . .
blockSeqs : . . . . . G . . . . A . . . T . . TTGT . . . . . . . . . . . . G A AGT C . . CT . T G . . . . G C G . . . . . . G . T . . . . A . . . . . . . . ACTT . . . . . . . . . . . T . . .
blockSeqs : . . . . . G . . . . . . . . T . . TGT . . . . . . . . . . . . G A CGT C . . CG . T G . . . . A T T . . . . . . G . C . . . . C . . . . . . . . CTT . . . . . . . . . . . T . . .
blockSeqs : . . . . . A . . . . . . . . T . . TGT . . . . . . . . . . . . . . . . . . C . T . . . . . . . . . . . . . . G . . . . . . G . . . . . . . . CTT . . . . . . . . . . . T . . .
blockSeqs : . . . . . A . . . . . . . . . . . TGT . . . . . . . . . . . . . . . . . . . . A . . . . . . . . CTT . . . . . . . . . . . T . . .
blockSeqs : . . . G . . . . . . . . . . . . . . . . . . . . CTT . . . . . . . . . . . T . . .
blockSeqs : . . . G . . . . . . . CT . . . . . . . . . . . . . . .
blockSeqCons : TGT************ ********* ** NGT**** ** T** ** **** ***** *** ****
originalCons : TGCACC-AT-TTTTGTTTC-C-A-GTAAAGA-TTC--AT---G-TTCTA----T-TTCT-ATT-GCATTT-GT-G-TT---T-G--T------AACA---AT---------ATTG--TG-GTTT-----GTAA----CA-ATAT------------TGTGGCT--GG-G-A-GAACGCTTTT--GGTT-A-ATANG-T---TCA-T--AT-CCT--ACTTTGC-TA-G--TCAA---GACGCCG-N-TTTGTCTCCC--AG-CC-AAT-TTC--TAG----AT-G-TATT-TTTATCT-T-AGTAT-T--AACAT-TTT--T-CGTC----ATTTT-AAATA---AATG-ACAAATTTT-----TACAA---C-T--A-ACATGTT---TTTCTGT--TATGA-TTTAC-TG----GG----AAA-C-A-AACA-----------GAGCTGCAATGTTGCC--TTGGA-CT-TGCATA
finalCons : TGCACC-AT-TTTTGTTTC-C-A-GTAAAGA-TTC--AT---G-TTCTA----T-TTCT-ATT-GCATTT-GT-G-TTTGT------------AACA---AT---------ATTG--TG-GTTT-----GTAA----CA-ATAT------------TGTGGCT--GG-G-A-GAACGCTTTT--GGTT-A-ATANGT----TCA-T--AT-CCT--ACTTTGC-TA-G--TCAA---GACGCCGT--TTTGTCTCCC--AG-CC-AAT-TTC--TAG----AT-G-TATT-TTTATCT-T-AGTAT-T--AACAT-TTT--T-CGTC----ATTTT-AAATA---AATG-ACAAATTTT-----TACAA---C-T--A-ACATGTT---TTTCTGT--TATGA-TTTAC-TG----GG----AAA-C-A-AACA-----------GAGCTGCAATGTTGCC--TTGGA-CT-TGCATA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): AAATAAGGTTTATTTTTTAATAAAGCAATTCTATGTTTTAAGATCTTGTAAATTATTGTTTGTTAACATTATTTAATGTCATCTCATATAAGGGTCATAGTTATTTTTTGTGTTGTATTTTTTTACGCTCCACCCTGAGATTCAAATTCTTCGGGCAATGCTGATGGTAATCCAGCCTCATAATGGACCCGTCCAAATTCACAAGCCGTTCTTCCTAGTTCTTTTGTTTATTACGTAATATTTTGTGTGTAAGGCTTTCAGCAATCAGATCAAAGCCGAAGCGTCATTCTTTTGTTTTAGTTTGAGTGTGCAGGCACAAAGAAATTCACAAAAGAATACGCAACCGCCACACTCCACTCCGTCCTCCACATTCGTAATATTCTATAACCGTAAATTTCATTTTGAATTTCATTGTGCCTTTT
Unaligned ( gi|5 ): AAATTAAGGTTTGATGTGTTTTTTGAATTAAAGCATAATTTATGTTTAAAACTTGTAATAATTGTTTTAATATTTTATGTAGATCTCAATATAATGTGTTTTTAGAATGGTTGATTTCATTAACGCACCCCAACCCTTTAGAAACGCAATTATCGAAACAATAACTCATTTTTCGGGGCATGCTGATGGTAATTCAGCCGTCATATGACCCGATCCGCAAATTCTCAAGCCCGTTCTTTTACCTTAGCTCTTTGTTATCTTAAGCGTAATATTTTTGTGGGTGTGTTAGGCTTTCAGCCAATTACAACACCAACGCCTCGAAGGCGTCATTCCTTATGTTTAGGTTGGAGTGTCATGGCACAAAGGAAATTCA
Unaligned ( gi|9 ): AAAATAAGGTTTATTTTTTAAGTAATGCATATTTAGTGTTAAATCACTTGAAGATATAAATTTTGTTTAGTAATATTCATAGTCAATCTCATATAGGTTTTCCTGTGTTTTTATGCAGTATATTTTTTATCCTCACTCGCAACCTCTATATTTTGATGAATTCATTTGATAGTTGAATATTAATAGTCCGTCTCATGAATGGACCCGTCCAAATTTTTAACAAGCCGTTATCTTCGACTCGTTTCTTT
Unaligned ( gi|11 ): AGTTTCAGTCAATCAGATCACCGCGCAAAGCGTCTTTAATTTAGTTTGGAGTGCGGTCACAAAAAAGTCACGAAAGAAAAAGCAACCTCCACCTCCACCACATTTGTACATCGATATGACCTACATCAATTTTAATTTTAATTGGCCTTTTTTGAGCACTATT
Unaligned ( gi|16 ): TCCTAATTCATGACCCGTTTTTACCCGGTTCTTTGTTTATGACATAATAATTTATGTGTAAGGCTTTCAGGCAATCAGATCAAAGCGC
Alignments
lowQualScore : 2222 1 1 111111111111111 111 222222222 11 22222 1111 333333333333 11 111 1111111 111 11 11 11 1111 11111 22222222 1111 22222222222
lowQualScore : 5 5 4 4 4 1 5 66 888 5 3333 5 5 1 55 5 1 666666666666666 000 222222222 33 6 55555 4444 6 444444444444 33 5 5 5 000 888 7777777 1 6 99 888 99 1 1 6 6 99 111 3 1 66 66 5 5 5 11 2222 888 5 7 5 5 5 66 2 5 66 4 9999 4 777 4 0 11111 66666666 4 777 66 4 4 3333 9999 4 4 4 11111111111 1 66 4 4
lowQualScore : . . . . . . . .. ... . .... . . . .. . . ............... ... ......... .. . ..... .... . ............ .. . . . ... ... ....... . . .. ... .. . . . . .. ... . . .. .. . . . .. .... ... . . . . . .. . . .. . .... . ... . . ..... ........ . ... .. . . .... .... . . . ........... . .. . .
lowQualScore : 7 7 4 4 4 9 0 99 888 0 6666 7 7 4 99 7 4 666666666666666 000 999999999 66 7 88888 2222 7 222222222222 66 7 7 7 444 333 8888888 0 7 22 777 22 7 0 7 7 22 777 7 0 33 99 0 0 0 99 1111 666 7 1 7 7 0 99 0 0 11 4 4444 4 888 4 8 11111 88888888 4 888 11 4 4 9999 4444 4 4 4 11111111111 9 11 4 4
consensus : TGCACC-AT-TTTTGTTTC-C-A-GTAAAGA-TTC--AT---G-TTCTA----T-TTCT-ATT-GCATTT-GT-G-TT---T-G--T------AACA---AT---------ATTG--TG-GTTT-----GTAA----CA-ATAT------------TGTGGCT--GG-G-A-GAACGCTTTT--GGTT-A-ATANG-T---TCA-T--AT-CCT--ACTTTGC-TA-G--TCAA---GACGCCGT-TTTGTCTCCC--AG-CC-AAT-TTC--TAGA----T-G-TATT-TTTATCT-T-AGTAT-T--AACAT-TTT--T-CGTC----ATTTT-AAATA---AATG-ACAAATTTT-----TACAA---C-T--A-ACATGTT---TTTCTGT--TATGA-TTTAC-TG----GG----AAA-C-A-AACA-----------GAGCTGCAATGTTGCC--TTGGA-CT-TGCATA
Reference ( family-3716 ) : TGCACC-AT-TTTTGTTTC-C-A-GTAAAGA-TTC--AT---G-TTCTA----T-TTCT-ATT-GCATTT-GT-G-TT---T-G--T------AACA---AT---------ATTG--TG-GTTT-----GTAA----CA-ATAT------------TGTGGCT--GG-G-A-GAACGCTTTT--GGTT-A-ATANG-T---TCA-T--AT-CCT--ACTTTGC-TA-G--TCAA---GACGCCGT-TTTGTCTCCC--AG-CC-AAT-TTC--TAGA----T-G-TATT-TTTATCT-T-AGTAT-T--AACAT-TTT--T-CGTC----ATTTT-AAATA---AATG-ACAAATTTT-----TACAA---C-T--A-ACATGTT---TTTCTGT--TATGA-TTTAC-TG----GG----AAA-C-A-AACA-----------GAGCTGCAATGTTGCC--TTGGA-CT-TGCATA
gi|1 : TGCACCCATATTTTGTTTC-C-C-GTAAA-A-TTT--AT---G-TTCTA----T-TTCTTATTTGCATTC-GT-G-TT---T-A--TGACTTAAACA---ATTGACTGGCTGTTA--TA-ATTC-----GTAA----CAGATAT------------TATGGCTTGGGTG-A-GAACGCTTTT--GGTT-A-ATGTACT---TCATT--AT-CCTTGAC-TTGCTTA-G--TCAA---GACGCGGTCTTTGT-TCCCAAAG-CC-AATCTTC--T
gi|10 : gataagggtttattttcaataaagcaattttatgttaaactatgtaatttaatatgtttaatatatttatgttcattttctcatataaggtttgtttactctacgttcccaaccccttttagagacatgttcaaaccaattttcattatttcggcatgctgatggtaatccagcctcataattggacccgttccaattcacaagccgttcttacctagttttttgtttattaacgtaacatttttgctgtaaggccttcagccaattcagaccaaagcgcgaagcgtccatatcctattgcttttacgtttggaagttgcacggcacaaagaattcacaaaagattattacaaaccgccaccctccactcccgtactccacattcgtaatattttctataccctaaattccggccttttttaGGCT--GG-G-A-GAACGCTTTT--CTTT-A-AGAGG-A---TTA-T--AT-C-T--ATTTTGC-TA-G--T----------------TTGTCTCCC--AG-TC-AAT-TTC--TAAAATTAT-G-CATT-TTTATCT-T-GGTAT-T--CACATGTTT--T-CTTC----ATTTT-AAATA---AATG-AT---TTTTTTTTCTACAC---CTT--A-ACATGTTTTCTTTCTGT--TTTGA-TTTAC-TT----GGAAAAAAA-G-A-AACA-----------GAGATGCAACG-------TTGGA-CT-TATATAtag
gi|12 : C--AG-CC-AAT-TTC--TAGA----T-G-TATT-TTTATCT-T-AGTAT-T--CACAT-TTT--T-CGTC----ATTTT-AAATA---AATG-ACAAATTTT-----TACAA---CTT--A-ACATGTT---TTTCTGT--TATGA-TTTAC-TG----GG----AAA-CAA-AACA-----------GAGCTGCAATGTTGCC--TTGGA-TT-TGCATAgcacggtttttaa
gi|13 : TTCC--AG-CC-ATT-ATC--TATA----T-GGTATT-TT-ATCA-T-TGTAT-T--AACAT-TAT--T-GGTC----ATTGT-AAA--------------ATCCT-----TACAA---C-TGTA-ACATGTT---TCT-TGT--TAT----------------------AA-C-A-ACCA-----------GAGCTGCAATGTTGCC--TTGGA-CT-TACTTAacatggttt
gi|14 : GTAT-T--AACAT-TTT--T-CGTC----ATTTT-AAATA---AATG-ACAAATTTT-----TACAA---C-TT-A-ACATGTT---TTTCTGT--TATGA-TTTAC-TG----GG----AAA-C-A-AACA-----------GAGCTGCAATGTTGCC--TTGGA-CT-TGCATAgcacggttttt
gi|15 : T--T-CGTC----AAATT-TAACA---GATG-ACAAATATT-----TACAC---C-TT-C-GCGTGTT---TTTCTGT--TATGA-TTTAC-GT----GG----AAA-C-A-AACA-----------GAGCTGCAATGTTGCA--TTGGA-CT-TGTATacatggttttaaac
gi|17 : CACC-AT-TATTGTTTC-C-A-GTAATGA-TTC--AT---G-TTGTA----T-T-CT-GTC-GCATTT-AT-G-TT---TTG--T------AACA---AT---------ATTG--T
gi|18 : tttattTACACC-AT-TTTTGTTTC-C-A-GTAAATA-TTC--AT---G-
gi|2 : ttttaGCATC-AT-TTTGCTTTC-C-A-TTAAAGA-T-C--AT---G-TTCTAT---T-TTCT-A-T-GCATTT-GT-GTTT---T-G--T------AACA---AT---------ATTG--TG-GTTTTG---GTAA----CC-ATAT------------TGTGG-T--GG-G-ATGAAGGCCTTT--
gi|2 : gttcaaactttaattaattgttttcatatttattcatctcatataaggtttttttatgtttgatacttttacgctcgcatttctaaaccaatatatttttccgtggcatgcatgatgtattcagcctcataatggtaccgtcaaattacaaagccgtccttacctatgttcttttgtttaattacgtcaatatttttgtgtgtaaaggctttccatccatcagaccaagccgcgaagcgtcattcttttgtttagtttgagtgtgcaggcacaaagaattcacaaaagaatacgcaaccgccaccggtccactgccgtgcctctcattcgtaatttttctatctccacttttttcggctttttcttaaGCACC-AT-TTTTGTTTCTC-A-GTAAAGttttaggcaccatttttgtttctcagtaaag
gi|3 : gttcaaactttaattaattgttttcatatttattcatctcatataaggtttttttatgtttgatacttttacgctcgcatttctaaaccaatatatttttccgtggcatgcatgatgtattcagcctcataatggtaccgtcaaattacaaagccgtccttacctatgttcttttgtttaattacgtcaatatttttgtgtgtaaaggctttccatccatcagaccaagccgcgaagcgtcattcttttgtttagtttgagtgtgcaggcacaaagaattcacaaaagaatacgcaaccgccaccggtccactgccgtgcctctcattcgtaatttttctatctccacttttttcggctttttcttaagcatcattttgctttccattaaagatcatgttctattttctatgcatttgtgttttgtaacaatattgtggttttggtaaccatattgtggtgggatgaaggcctttttttagTTC-C-ACGTAAAAAATTCTTATCGCGCTTCTAGGTGTATTCT-ATTTGCATTT-GT-G-TT---T-AGAT------AAAATTTAT---------ATTGA-TG-GGTTATAGGGTAAACCTCG-ACATATCAAAGTTAAATGTGGCTT-GG-GTA-AAACGCTTTCTCGGTTCACATACG-TATTTCA-T--AT-GCT--ACCTT---TA-GGTCCAATGGAACACCGGGTTTGTCTCCCC-AGTCC-AAT-TTTCTTAGA----TTG-TATT-TT-ATTT-TCAGTTTAT--ACCAT-TTTATT-CGTCCAATATTTTTAAATA---AAAT-ACAAATTTT-----TACAAATTT-T--A-ACCAGTT---TTTCTGT--TATGATTTTAC-TGC---GG----AAATC-ACAATATATTCATTCGGAAGCTG-AATG-TGCC--TTGGATCTGTGCATA
gi|6 : tatgcagccaatttatatgagttcGCACC------TTGTTTC-CCA-GTAAGAA-TTC--AT---G-TTCTAA---T-TTCT-ATT-GCATTTTGT-G-TTGTAT-G--T------AACA---AT---------ATTA--TG-GTTT-----GTCA----CA-GTAT------------TGTGGCT--GG-G-A-G-ACGCTTTT--GGTT-A-ATAAG-T---T-A-TTAATACTT--ACTTTAC-TAGG--TCAA---GACTCCGT-ATTGTCTCCCT-CG-CCTAAT-TTCT-TAGA----T---TCTA-TTTATCTGT-AGTAT-TCCAGCTC-TTT--TACGTC----ATTTT-AAATACCCAATGAACAATTTTT-----CACAAAC-T-T--ACACAGGTT---TTTCTGTTCTATGA-TTTAC-TG----GG----AAA-C-A-AACA-----------GAGCTGCAAGGTAGCCGTTTGGA-TT-TGCATAacatagagtcgtaaaattttataacataaattaaggtt
gi|7 : TGCACC-AT-TTTTGTTTC-C-A-GTAAAGA-TTC--AT---G-TTCTA----T-TTCT-ATT-GCATT--GT-G-TT---T-G--T------AACA---AT---------ATTG--TG-GTTT-----GTAA----CA-ATAT------------TGTGGCT--GG-G-A-GAACGCTTTT--GGTT-A-ATACG-T---TCA-T--AT-CTT--ACTTTGC-TA-G--TCAA---GACGCCGG-TTTGTCTCCC--AG-CC-AAT-TTC--TAGA----T-G-TATTATTTA-CT-T-AGTAT-T--AACAT-TTT--T-CGTC----ATTTT-AAATA---AATG-ACAAATTTT-----TATAA---C-T--A-ACATGTT---TTTCTGT--TATGA-TTTAC-TG----GG----AAA-C-A-AACA-----------GAGCTACAATGTTGCC--TTGGA-CT-TGCATAacatggt
gi|8 : GTTTC-C-A-GTAAAGA-TTC--AT---G-CTATA----T-TTCT-ATT-GCATTT-GTTGCTT---T-G--T------GACA---AC---------ATTAATTATGTTT-----GTAA----CA-ATAT------------TGTGGCT--GG-G-A-GAACGCTTTT--------------------CA-T--AT-CGT--GCTTTGC-TA-G--TCAA---GACACTGT-TTTGTCTCCC--AG-CC-AAT-TTT--TATA----T-G-TG-----CATTT-T-AATAT-T--A------------CGTC----ATTTT-CAATA---ACAG-ACGAATTTT-----TACAC---CTT--A-ACATGTT---TTTCTGT--TATGA-TGTACATGATATGG----TAA-C-A-AACA-----------GAGCTGCAATGTTGCC--TTGGA-CT-
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): AAATAAGGTTTATTTTTTAATAAAGCAATTCTATGTTTTAAGATCTTGTAAATTATTGTTTGTTAACATTATTTAATGTCATCTCATATAAGGGTCATAGTTATTTTTTGTGTTGTATTTTTTTACGCTCCACCCTGAGATTCAAATTCTTCGGGCAATGCTGATGGTAATCCAGCCTCATAATGGACCCGTCCAAATTCACAAGCCGTTCTTCCTAGTTCTTTTGTTTATTACGTAATATTTTGTGTGTAAGGCTTTCAGCAATCAGATCAAAGCCGAAGCGTCATTCTTTTGTTTTAGTTTGAGTGTGCAGGCACAAAGAAATTCACAAAAGAATACGCAACCGCCACACTCCACTCCGTCCTCCACATTCGTAATATTCTATAACCGTAAATTTCATTTTGAATTTCATTGTGCCTTTT
Unaligned ( gi|5 ): AAATTAAGGTTTGATGTGTTTTTTGAATTAAAGCATAATTTATGTTTAAAACTTGTAATAATTGTTTTAATATTTTATGTAGATCTCAATATAATGTGTTTTTAGAATGGTTGATTTCATTAACGCACCCCAACCCTTTAGAAACGCAATTATCGAAACAATAACTCATTTTTCGGGGCATGCTGATGGTAATTCAGCCGTCATATGACCCGATCCGCAAATTCTCAAGCCCGTTCTTTTACCTTAGCTCTTTGTTATCTTAAGCGTAATATTTTTGTGGGTGTGTTAGGCTTTCAGCCAATTACAACACCAACGCCTCGAAGGCGTCATTCCTTATGTTTAGGTTGGAGTGTCATGGCACAAAGGAAATTCA
Unaligned ( gi|9 ): AAAATAAGGTTTATTTTTTAAGTAATGCATATTTAGTGTTAAATCACTTGAAGATATAAATTTTGTTTAGTAATATTCATAGTCAATCTCATATAGGTTTTCCTGTGTTTTTATGCAGTATATTTTTTATCCTCACTCGCAACCTCTATATTTTGATGAATTCATTTGATAGTTGAATATTAATAGTCCGTCTCATGAATGGACCCGTCCAAATTTTTAACAAGCCGTTATCTTCGACTCGTTTCTTT
Unaligned ( gi|11 ): AGTTTCAGTCAATCAGATCACCGCGCAAAGCGTCTTTAATTTAGTTTGGAGTGCGGTCACAAAAAAGTCACGAAAGAAAAAGCAACCTCCACCTCCACCACATTTGTACATCGATATGACCTACATCAATTTTAATTTTAATTGGCCTTTTTTGAGCACTATT
Unaligned ( gi|16 ): TCCTAATTCATGACCCGTTTTTACCCGGTTCTTTGTTTATGACATAATAATTTATGTGTAAGGCTTTCAGGCAATCAGATCAAAGCGC