lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 888888888888 1 111 444444 1111 2222 22222 222222 11 1111 33 11 1111 33 11 111 1 11111 222222 111 11111111 22222222 11 222222222 11 555555555555555 11 33333333333333333333 333333333 22222 55555555555555555555555555555555 11 333333333333333 11 33333333333333333333333333333333333333333333333333333333333333333333333 111 1 3333 222 11 1 1 1 11 2 1 1 11 7777777777777 11 22222 11 1 1 33333333333333 11111 1 666666666 111 222 1 1 1 4 22222 1 33333 333 1 666666 4 5555555555 4 1 5555555555 444444 1 4 444 1 1 4 1 55555 4 2 2 1 222 11 222 4 4 4 777 22 333 333 33333333333333 77777777777777777777777777777777777777 1 2222222222222222222222 11 111 33 1 777777777777 111 1 1 1 222 1 1 11 111 1 3333333333 22 1 2 2 333 444 2 1 888888888888888888888 11 1111 1 22 2222222 11 22 22 44444444 2222 1 444444444444 22 1111 1 2222 111 1 11 1 1 111 11 3333 1 1 1111 2222 11 00000000000000000000000000000000000000000000000000000000000000000000000 111 11 2 1 3333333333333 22 11 1 2 4444444444444 6666666666666666666666666666666666 2222 11 11 11 11 555555555555555555555555555 11 3333 22222 222 2222 2222222 22222 22222 22222222222222 111 2222222 11 11 111 1
lowQualScore : 7777 2 222222222222 3 666 1 6 6 6 222222 4444 6 3333 6 99999 222222 6 55 6666 5 66 5 5 77 00 2222 5 5 88 5 5 8888 77 5 55 6 111 5 6 6 88888 99 6 3 333333 6 444 99999999 1 77777777 8 8 8 11 8 8 6 444444444 88 666 55 555555555555555 55 999 6 99 11111111111111111111 8 0 222222222 8 00000 8 22222222222222222222222222222222 8 8 99 88 0 6 777777777777777 11 8 44444444444444444444444444444444444444444444444444444444444444444444444 333 0 6666 9 3 111 33 0 6 0 0 88 7 0 2 2 0 33 2222222222222 33 88888 33 0 0 00000000000000 77777 3 0 3 000000000 3 777 111 0 0 0 6 0 99999 5 00000 000 6 555555 0 2222222222 0 5 6666666666 333333 7 0 555 6 5 5 0 5 2 11111 6 0 8 7 0 777 88 222 0 0 0 000 33 6 000 555 4 11111111111111 77777777777777777777777777777777777777 4 3 3 7 8888888888888888888888 4 6 2 33 4 3 777 66 6 3 111111111111 3 888 55 3 3 3 333 3 3 6 88 777 9999 3 3333333333 0 77 3 0 0 000 111 4 0 3 3 777777777777777777777 2 33 8888 0 22 6666666 0 33 7 00 55 44444444 7 7 8888 3 333333333333 7 11 1111 3 0 1111 666 0 0 3 00 0 0 2 444 4 33 5555 0 0 2222 4444 33 22222222222222222222222222222222222222222222222222222222222222222222222 444 33 0 0 6666666666666 77 8 11 8 8 6 4 3 0 5555555555555 8 8888888888888888888888888888888888 8 8 1111 0 11 0 11 0 8 8 11 11 8 0 777777777777777777777777777 999 8 8 8 11 7777 00000 444 1111 3 99 3 1111111 6 6 6 99999 99 11111 2 6 6 6 5 00000000000000 77 0 111 1 8888888 11 8 77 666 5
lowQualScore : .... . ............ . ... . . . . ...... .... . .... . ..... ...... . .. .... . .. . . .. .. .... . . .. . . .... .. . .. . ... . . . ..... .. . . ...... . ... ........ . ........ . . . .. . . . ......... .. ... .. ............... .. ... . .. .................... . . ......... . ..... . ................................ . . .. .. . . ............... .. . ....................................................................... ... . .... . . ... .. . . . . .. . . . . . .. ............. .. ..... .. . . .............. ..... . . . ......... . ... ... . . . . . ..... . ..... ... . ...... . .......... . . .......... ...... . . ... . . . . . . ..... . . . . . ... .. ... . . . ... .. . ... ... . .............. ...................................... . . . . ...................... . . . .. . . ... .. . . ............ . ... .. . . . ... . . . .. ... .... . .......... . .. . . . ... ... . . . . ..................... . .. .... . .. ....... . .. . .. .. ........ . . .... . ............ . .. .... . . .... ... . . . .. . . . ... . .. .... . . .... .... .. ....................................................................... ... .. . . ............. .. . .. . . . . . . ............. . .................................. . . .... . .. . .. . . . .. .. . . ........................... ... . . . .. .... ..... ... .... . .. . ....... . . . ..... .. ..... . . . . . .............. .. . ... . ....... .. . .. ... .
lowQualScore : 0000 8 666666666666 3 555 0 7 7 7 555555 2222 7 3333 7 33333 777777 7 88 5555 7 44 7 7 99 77 1111 7 7 66 7 7 1111 99 7 77 7 777 0 7 7 88888 22 7 2 222222 7 000 44444444 4 00000000 0 0 0 00 0 0 0 444444444 66 888 88 222222222222222 88 222 7 22 55555555555555555555 0 8 000000000 0 00000 0 00000000000000000000000000000000 0 0 00 88 8 6 000000000000000 00 0 11111111111111111111111111111111111111111111111111111111111111111111111 888 0 5555 8 2 000 22 0 5 0 0 22 8 0 0 5 0 88 5555555555555 88 22222 88 0 0 22222222222222 00000 2 0 2 000000000 2 555 000 0 0 0 0 0 55555 5 55555 000 0 000000 0 0000000000 0 0 0000000000 000000 0 0 000 0 0 0 0 0 5 00000 0 0 5 5 5 000 55 000 0 0 0 000 00 0 555 000 0 55555555555555 00000000000000000000000000000000000000 0 0 3 0 7777777777777777777777 0 0 0 22 0 2 555 77 0 3 000000000000 2 000 88 3 3 3 333 3 3 0 33 777 7777 3 7777777777 7 00 3 0 0 000 000 0 0 0 3 000000000000000000000 5 88 8888 0 55 2222222 2 22 3 77 77 00000000 3 3 3333 3 777777777777 3 77 2222 2 0 2222 222 2 8 5 22 0 0 5 000 0 88 0000 0 0 0000 8888 88 22222222222222222222222222222222222222222222222222222222222222222222222 555 88 0 0 0000000000000 55 0 00 0 0 0 0 0 8 6666666666666 0 0000000000000000000000000000000000 0 0 0000 8 00 8 00 8 0 0 00 00 0 8 222222222222222222222222222 444 0 0 0 00 0000 00000 666 0000 8 22 7 7777777 7 7 7 55555 88 88888 5 7 7 7 7 00000000000000 55 8 888 4 6666666 00 0 66 222 0
consensus : ATGTTGTG----GTCAT-CGCAT--AT-TATTTAT-TAAC-TAACT-A-TA-TT-TT---AAAC----GT-TTT---TAAA-TG---A-TTTGTTG-----AA-TGTG--ATATTTCAT-TT-ACTAA-CCTTG-ACA-TG-AT--GGA-AAACACAT----TAC-A-ACGATTGTA-A-GA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATA---T-TG-CATGTCCC---AAATGTT--A--TTTTCAATA-C-AT---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAA--TA-A---TA-TTTCAT-T-A--TGTAAAACTATATTAT-----T-TGAAAAG--AT-C-TG-AAAT--AA-AG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-ATAAAA-TG-TTACTT-----T----T--T-CA--GGTAA-TCT-------TAATCC-TTGTA---------ACTT------G-AAA--ATATGTCC-TTGCGTNTT-------TACCGAAAAA-GAAANA-CCTGTGTAATGAATC-AATATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTA-TTCATG-GAAAATGA-AAG--TA-TA--G-GC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--A-AAATT-TC--AACAAAG-ATATGT--------AATTATACACT---TCCGTATT-TT-CTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAATATGATGATAGTCTACCTAAACTGGATATCTAAAAATGTTTTTACAGGGCGGTAATTTTGTTGGAATGAATTGGGCGTGTCCTCGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTC--CGCCGTGTTACTTTTTTAAAACGTAA-CACCATGGGACATTAAAGACAAAACAATGCCGTTATTTTATTATTTATTAGAAATAA-ATTCATGATTATTGTGATTCCATACTTT-CTTAAGAACTTATATAACTAGATTGAATCAATTTACAGTTTTNTATAATCAGTAAGCATACATTAAAGTCGCGTCTTTTGATTTAAGTAAACACGAACGGACAATANAGGGNNACATGAAGTGCAAAAAGTGTACATTTAATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGA-CGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTTGCAATATGGTTGATCGATATCNCAAAAAGTCCTGTTTNAAGAAAAACGNNTCTTGNAAGCTTTTGGGTCCATAACAGNAACGGACTGTAATTATTCCAGGTAAACATNANGGACATTT-GGAGTTTT--------------------G-TTTTTTTTTTNAATCTAAAT-GCTCTATATNTAATCTA---TGTAG-TTTTTTTGGTAGTTTTT-TC-TG--A---AAATCTAAATGCTC--TATATATAATCTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-A-TAAGTATAGAATTAA-AAAAAAACCAT---C-CGAAAACATT-AAAAAGAATTAGTTCCTTCACATGTTACAGCCCTGTCTCNGCATGTTNC-AG------TG-T-----------GTCCCTNCTGTTACTT--GTCAAA---AAT-ATTGAAAAATN---A--TATCATT-ATTGATCA-CTAACGAC-CTCGA----CTN-TTGTTAAATAT----ACT-GCAAATATTACT---ATTTTTCAAC-ATAGTTGCGA-A-CCATGT-CATT----GT-G-TTATGTCTTTGTATNTTC-AA-AATA-TAGAACAATGTC--ANGT--TCAAGC--TTT-GC-AAATTT-TG-AG-AGAAG--AGTT-----AACTTAGG-------AC-GANAAAAA---GGTC---ATGTAT-T----TA-T-----G-TTT---ACA--ACA--TAAGAGCC-TT--TG-TAAAA---CGCATA-CATTTCTATAATTG-TA--GCGTAA-T-T-ATGTC-ATGAAATGAAA--TAT------AT-ATCTTCTTT---GAT-AT--AA-A--TAA--------------TA-TTCAATT-TTATTTAAAG--TAACACCAGGGACA--TATTTTTC-A-G--CTGT--AGC-ATGTATAA-C--------CTT--GAT-A----T--CTA-CGA-AA-TGG-AACA--ATT--TGTTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCGGTAT--TTAGT-------TAG-ATAA-TCAA-AA--T--AAGATG-AAAAAATTAC--A--ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCCG-A-AATAAA--GA-CA-TTTTTN--GAAAATGACC
Reference ( gi|2 ) : ATGTTGTG----GCCATGCGCATAAATATATTTAT-TAGC-TAACT-A-TA-TT-T----AAAC----GT-TTT---TAAA-TG---AATTTGTTG-----GA-TGTG--ATATTTCAT-TT-ACTAA-CCTT--ACA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTGT--A-GA-A-TT-AATA--T-TTT--G-ACAA---TTAAT-ATG-C-AA--TT--TGG-TCAAATATA---T-TG-CATGTCCC---AAATGTT--A--TTTTCAATA-A-AT---TAAG-TC-GAAA-ATATG--C-AAGAA-AGAA--TA-A---TA-TTTCAT-T-A--TGTAAAAC---ATTAT-----T-TGAAAAG--AT-C-TG-AAAT--AA-AA---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-ATAAA--TG-TTACAT-----T----T--T-CA--GGTAA-TCT-------TAATC--TTG-----------ACTT------G-AAA--ATATGTCC-TT-CGTGTT-------TACCCAAAAA-GAAAT--TCTGTGTAATGAATC-A-TATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTATTTCATG-GGAAATGA-AAG--TAGTA--G-G-----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--A-AAATT-TT--AACAAAG-ATATG---------AATTATACACT---TCCGTA-T-TT-CTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAGTATGATGATAGTCTACCTAAATTGGA-ATCT--AA-TGTTTTTACAGGG--GTAATTTTGTTGGAATGAATT-G-CGTGTCCTAGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTCGCCGC-GTGTTACTTTTT-AAAACGTAAACACC-TGG-ACATTAAAGACAAA-CAATGCCGTTATTGTATTATTTAT-AGAA-TAATATTCATGATTATT-TGAT-CCAAACTTTTCTTAAGA-CGTATGTAAATATATTGAATCAATT-ACAGTGTTGTATAATCAGTA-GCA-ATATTAA-GTCACGTCTTTTGATTTAAGTATACACGAAAGGACAATAGAGG-TAACATGAAGTACAAAAAGTGTACATTTAATCGATTTTATCCAACTGAATATTTCAATATTTT-CAATACAGATGGAGCGTAATT-GATATAATTGTTGCAAATAGTTATAAATA---ATTAACAATATAGTTGATCGATATTA--AAAAGTC---TTTAAAAAAAAAGAAATTT-GCA-GCTTTTGG-----TAACAGCA-CGGACTGTAAT-------GGT-A-CATTAAGGACATTT-GGATTTTT--------------------T-TTTTTTTTTTAAATTTAGAT-GCTCTATATTTAATCTA---TGTAG-GTTCTTTGGTAGATTTT-TC-----A---AAATCTAAATGCTC--CATATATAATTTATGTG-TG-CTAT-AA---AAAT-AT-TATCA--TC-A-TAAGTATAGAATTAA-AAAAAAATAAC---C-CGGAACAATT-AAAAAGA-TTAGT-CCTTC-C-TGTTACAGTTTTGTCTCTGC-TGTTAC-AG------TG-T-----------GTCCCTCCTGTTACTT--GTCAAA---AAT-ATTGAAAAATA---A--TATCATT-ATTGATCA-CTAATGAT-CTCGA----CTT-TTGTTAAATAT----ACT-GCAGATATTACT---ATTTTTCAACCATAGTTGTGA-A-CCATGT-CATT----GT-G-TTATGTCTTTGTATATTC-AA-AATA-TAGAACAATGTC--ATGT--TCAA----TTT-GC-AAATTT-TG-A--AGAAG--AGTT-----AACTTAG--------AC-GAAAAAAA---AGTC---ATATAT-T----TA-T-----G-TTT---ACA--ACA--TAA-AGCC-TT--TG-TAGAA---CGCATA--ATTTCTATAATTG-TA--GCGTAA-T-T-ATGTC-ATAAAATGAT---TAT------AT-ATCTTCTTT---TAT-AT--AA-A--TAA--------------TA-TTCAATT-TTATTTAAAG--TAACACCAGGGACA--TATTTTTC-A-G--CTGT--AGC-ATGTATAA-C--------CTT--GAT-A----T--CTA-CGA-AA-TGG-AACA--ATT--T-TTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCAGTAT--TTAGT-------TAG-ATAA-TCAA-AA--T--AAGATG-AAAAAATTAC--A--ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCCG-G-AAT-AA--GA-CA-ATTTTG--GAAAAGGACC
gi|1 : ATGTTGTG----GTCAT-CGCAT---T-TATTTAA-TAAC-TAACT-A-TA-TT-TT---AAAC----GT-TTT----AAA-TG---A-TTGGTTG-----AA-TGTG--ATATTTCAT-TT-AGTAA-CCTTG-ACA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTGT--AAGG-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-TA--TT--TGG-TCAAATATA---T--G-CATGTCCC---AAATGTT--A--TTTTCAATA-C-AT---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAAA-TA-A---TA-TTTCAT-T-A--TGTAAAACTATATT-T-----T-TGAAAAG--AT-C-TG-AAAT--AA-AG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---ACA------T-------TG-TCT-ATAAT--TG-TTATTT-----T----T--TTCA--GGTAA-TC---------AATC--T--------------------------------ATGC----------TT-------TACAAAAAAATAAAAC--ACTGTGTA-TGAATC-AATATA-TCC-CTTTGCGCACCTCATATCTGCACGTCATCCTGAATAC-TTATGTCATG-AGAAAT-A-AAG--TGATA--G-GCC---GAGGG--AAAGTTA--CTGAAAGGG-TGGATAG----AA---A--AGAAATT-TTCAAACAAAGGATATTT--------AATTATACACT---TCCGTA-T-TTTCTGATGTTGTC-CTTAATGT-TACCATCGAAATAAACTATAACAATATGATGATAGTCTACCTAAATTGGATATCT--AAATGTTTT-ACAGAGCGGTAATTTTGTTGGAATGAATT-GGCGTGTCCTTGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTC--CGCCGTGTTACTTTTTTAAAACGTAA-CACCATGGGACATTAAAGACAAAACAATGCCGTTATTTTATTATTTATTAGAAATAA-ATTCATGATTATTGTGATTCCATACTTT-CTTAAGAACTTATATAACTAGATTGAATCAATTTACAGTTTTGTATAATCAGTAAGCATACATTAAAGTCACGTCTTTTGATTTAAGTAAACACGAACGGACAATACAGG-GTACATGAAGTACAAA--GTGTACATT-AATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGA-CGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTTGCAATATGGTTGATCGATATTC--AAAAGTC---TTTTAAAAAA--GAAATTTTGCA-GCTTTTGG-----TAACAGAA-CGG-CTGTAAT-------GGTAA-CATTAAGGACATTT-GGAGTTTT--------------------G-GTTTTTTTTATAATCTAGAT-GCTCTATTTATAATCTA---TGTAG-TTTTTTTTGTAGTTTTT-TCTTGTTA---AAATC---------------TATAATCTATGTG-TG-CTATAAA---AAAT-AT-TATTA--TCAA-TAAGTATAGAATTAA-ATAAAAACAATCAAC-CGGAAACATTAAAAAAGA-TTAGT-CCTTC-C-TATTACAG-TTTGTCTCTGC-TGTTAC-AG------TGCT-----------GTCCCTCCTGTTACTT--GTCAAA---AAT-ATTGAAAAATA---A--TATCCTTAATTGATC--CTTATGA--CTCGA----CTT-TTGTTAAATATACTAACT-GCAA--ATTACT---A-TTTTCAA-CATAGTTGTGA-ATCCATGT-CATT----GT-G-TTATGTCTTTGTAT-TTCAAA-AATA-TAGAACAATGTC--ATGT--TCAT----TTT-GC-AAA-TT-TG-A--AGAAG--AGTT-----AACTTAG--------AA-G-AAAAAA---AGT----ATGTA--T----TA-T-----GTTTT---ACA--ACA--TAA-AGCCTTT--TG-TAAAA---CGCATA--ATTTCTATAATTG-TA--GCGTAA-T-T-ATGTC-ATGAAAT-ATAA-TAT------AT-ATCTTCTTT---GAT-AT--AA-----AA--------------TATTTCAATT-TTA-TTAAAG--TAACACCAGGGACA--TATTTTTCGA-G--CTGT--AGC-ATGTATAACC--------CTT--GA--A----T---TA-C-A-AA-TGG-AACA--ATT--TGTTTTTT-----GCA-T-TTTTGTCGTT-T--ATTGC-GTAT--TTA-T-------TAG-ATAATTCAACAA--T--AAGATGAAAAAAATTAC-----ATATAAG-GTCA-T-CAT-TT-TTTAAGTTT---A----T--TCAT---TCCG-A-AATAAA--GA-CA-GTTTT
gi|5 : tatatgggtcgatttcaaaaaatgtctaaATGTTGTGCCCCGTCAT-CGCAT---T-TATTTATATACCCTAACT-A-TA-TT-TCCTTAAACACCCGT-TTTAGCTAAACTGCCCATTTTGTTG-----AA-TGTACTATATTTCAT-TTTACTCA-CCTTG-AC--TA-ATTGGAA-AAACAC-T----TAC-A-ACGATTGCCAA-GA-A-TTGAATACCT-TTTAAG-ACAA---TTC-T-ATGGC-GAATTT--TGG-TCAAATAAA---TATG-CATGTTCTCAAAAATGGT--A--ATTT--ATA-C-ATACATAAG-TCAGAAA-ATATGAAC-AAGAA-AAAA--AA-A---TAATTTCAT-T-AA-TGTAAAACTATATT-T-----T-TGAAAAG--ATTC-TG-AAATCTAA-AGCCCGG--TCAAG---TGTGACAGGCAT---------TCAAACA-----AAATT---------TGT---AAA------T-------TG-TCT-ATAAAA-TGATTACTT-----T----T--TGCA--AGTAAATCT-------AAATCCGTTGTT---------ACTT------G-AAA---TATGTCCTTT-CGTG-T-------TACCAAAAAA-AGAATAACCTGTGTAATGAATC-A-AAT--TCC-CTTTG-GCACCTCATATCTG-ACGTCATC-TGAATA-ATTA-TTCATGCGAAAATGA-AAGGTTATAA--G-GCGCAAGAGGG--AAAG-T---ATGAA--GG-TG-ATAG----AAAAGA--A-AAATT-TC--AAC-AAG-AT-TGT--------AATTATACACT---TCCGTATT-TT-CTCATGTttctgaaatgacccat
gi|11 : gaatcgatttcaaaaatgtcctaaATGTTGTG----GTCAT-CGCA---AT-TATTTAA-TAAC-TAACT-A-TA-TT-TT---AAAC----GT-TTT----AAA-TG---A-TTTGTTG-----AA-TGTG--ATATTTCAT-TT-AGTAA-CCTTG-ACA-TA-AT--GG--AAACACAT----TAC-A-ACGATTGTA-A-GA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATA-----TG-CATGTCCC---AAATGT------TTTTCAATA-C-AT---T
gi|12 : tgggtcgatttcaaaaaatgtctaaATGTTGTG----GCCA-----ATCCATTTATTTATCTAAC-CAACTTA-TAGTTGT----AAAC----GT-TTT---AAAT-TG---GATTTGTTGTCGATAA-TGTG--ATATTTCAT-T---CTAAACCTG--ACA-TA-AT--GGATAAACACAT--------A-ACGATTGCTAA-GAGA-TT-AATA--T-TTTTTA-ACAA---TTCAT-ATG-CCAA--TT--TGG-TCAAATATA---T-TG-C-TGTC
gi|4 : tatatggtcgatttcaaaaaatgtctaaTTGTG----ATCATTCGTATA-------TTAT-TATA-TAA-T-A-CA-TT--------AC----GT-TTT---TAAA-TG---ATTTGGTTG-----AA-TGTGA-ATATTCCATAAA-ACTAA-CCTTG-ACACTGCAT--GG--ATACACAT----TAC-ATACGATTGTA-A-GA-AGCT-AATA--T-TTT--GAACAAATTTCCATCATG-CGGA--TT--TTG-TTCAATATA---C-TGCCATGTCCC---AAAT-TT--ATTTTTTCATTA-CTAT---CGAGTTC-GAAA-ATATG--CTAAGAA-AAAA--AA-AACGTC-TTTCAT-TCAATTGTAAAGC---A-TATTC---T-TTAAAAG--A
gi|9 : tatatggcgtcgatttcaaaatgtctaaatTATTTAT-TAACCTAATT-AATA-CT-TTG--AAAC----ACGTTT---TAAA-TG---A-TTTGTTG-----AAATGTG--ATATTCCAT-TA-ACTA--CCTTGAACA-TG-AT--GGA-AAACACAT----TACAA-ACGATTGTA-A-GA-A----ACTA--TATTT--G-AGAA---TTCAT-ATG-C-GA--TTCGTGGATC-AATATACCGT-GG-CATGTCCA---TAATTTTAAA--TTTTCATTACA-CT---TAAC-TT-GAAAGATATG--C-AAGAATAAAATTTATA---TC-TTTCATCC-A--TGT--AAC---ACTATACTTCT-TGAAAAGA-AT-C-TGAAAAT--AA-AC---GGAAT---G---C-TGAaatgtctagtttaaaagttactagcccttttgtgcaactgggaataaagcggatggctgacagcttcaacaaattctgtaattggtctttaaatgttcttctttctttcacataatctaatcgtgtaacttgaaacaatatgtccttgcattgttacagaaaaagaaaaatcgttgtattgatcaatataatcctctttgtgcacctcatatctgacgtcatctgaataattattcatggaaattgacaagtatactgccgagggacaaagatcacctgaaggatgatagagaaagaaaaattctcaacaaagatatgatataaactacattcgtatattctgatgttgtcttttaatgtatacctat
gi|19 : gtggagctcgattttcaaaaagtctaaattcttctggtgcatcgtatctcCTAA-CCTTG-ACA-TG-AT--GGA-AAACACATTATGTAC-A-ACGATTGTA-A-GA-A-CT-AATA--T-TTT--
gi|13 : AAG-TC-GAAA-ATATG--C-AGGAA-AAAA--TA-A---TA-TTTCAT-T-A--TGTAAAACTATATT-T-----T-TGAAAAG--AT-C-TG-AAAT--AA-AG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGTAACAAA------TTTTACTATGTTCT-ATAAA--TG--TAAAT-----TTCTAT--T-CA--GATAA-ATC-------TAATCG-TTGT----------ACTT------GAAAA--ATATGTCC-
gi|8 : -T-A--TGTATAAG---ATCAT-----GATGAAATGTGAT-TATA-AAAT--AACGA---GG--T---GATAT-TGACAG-CATCCAAGAGTCTCAA-CATTGTCAA-TTAAATAAAAATGT---GAAATTAGTT-------TG-TCTTATAAAACTG-TTACAT-----T----TCTT-CATAGGTAA-TCTGTTTCTCTAATCC-TTGTATGCCTAATTACTTCGATAAG-AGAT-ATGTGTCC-TTGCGTATGGGGAGGATA-CCAAAAA-GAAAA--CCTGTGTAATGAATCAA-TATA-GCC-CTTTGCGCATCTCATATCTG-ACGTCATC-TGAATACATTA-TTCATG-GAAAATGA-AAG--TA-TA--G-GC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---AAGA-AAATT-TC--AACAAAG-ATATGTACAAATGTAATTATACACT---TCCATATT-TT-CCGATGTTGTC-CTCAATGT-TACCAATGAAATAAACTATACCAATA
gi|4 : cG-GAAT--AA-AGCG-GA--T---GG--C-TGACAG-C-T---------TCAA-CA-----AA-TTC--------TGT---AAT------T-------GG-TCT-TTAAA--TG-TT-CTTCTTTCT----T--T-CA--CATAA-TCT--------AATC--GTGTA---------ACTT------G-AAACAATATGTCC-TTGCATTGT-------TACAGAAAAA-GAAAAA-TCGTTGTATTGA-TC-AATATAATCCTCTTTGTGCACCTCATATCTG-ACGTCATC-TGAATA-ATTA-TTCATG-GAAATTGACAAG--TA-TACTGCC-----GAGGGACAAAGATCACCTGAA--GGATG-ATAGAGAAAG---A--A-AAATTCTC--AACAAAG-ATATG---------A--TATAAACTACATTCGTA-TATT-CTGATGTTGTCTTTTAATGTATACCTAT
gi|1 : tatatggcgtcgatttcaaaatgtctaaatttgtgatcattcgtatattattatataatacattacgtttttaaatgatttggttgaatgtgaatattccataaaactaaccttgacactgcatggatacacattacatacgattgtaagaagctaatattttgaacaaatttccatcatgcggattttgttcaatatactgccatgtcccaaatttattttttcattactatcgagttcgaaaatatgctaagaaaaaaaaaacgtctttcattcaattgtaaagcatattctttaaaagaaatgtctagtttaaaagttactagcccttttgtgcaactgTGTC-CTTAATGT-TACCA
gi|18 : tatatgggtcgatttcaaaaaatgtctaaatgttgtggtcatcgcatttatttaataactaactatattttaaacgttttaaatgattggttgaatgtgatatttcatttagtaaccttgacataatggaaaacacattacaacgattgtaaggattaatattttgacaattcatatgctatttggtcaaatatatgcatgtcccaaatgttattttcaatacattaagtcgaaaatatgcaagaaaaaaataatatttcattatgtaaaactatatttttgaaaagatctgaaataaagggtgttgacagcattcaacaaatttgtacattgtctataattgttatttttttcaggtaatcaatctatgctttacaaaaaaataaaacactgtgtatgaatcaatatatccctttgcgcacctcatatctgcacgtcatcctgaatacttatgtcatgagaaataaagtgataggccgagggaaagttactgaaagggtggatagaaaagaaattttcaaacaaaggatatttaattatacacttccgtattttctgatgttgtccttaatgttaccatcgaaataaactataacaatatgatgatagtctacctaaattggatatctaaatgttttacagagcggtaattttgttggaatgaattggcgtgtccttgacagacgccacgatggatttctgccaaataatgttgcgtatgtccgttatgttactgtccgccgtgttacttttttaaaacgtaacaccatgggacattaaagacaaaacaatgccgttattttattatttattagaaataaattcatgattattgtgattccatactttcttaagaacttatataactagattgaatcaatttacagttttgtataatcagtaagcatacattaaagtcacgtcttttgatttaagtaaacacgaacggacaatacagggtacatgaagtacaaagtgtacattaatcgattttatccaactgaatatttcaatatttttcaatacagatggacgtaattcgatataattgttgcaaatagttataaatatatatttgcaatatggttgatcgatattcaaaagtcttttaaaaaagaaattttgcagcttttggtaacagaacggctgtaaCTATACCAATATGATGATAGTCTACCTAAACTGGATATCTAAAA-TGTTTTTACA-GG--GTAATTTTATTGAAATGAATTGG-CGTGTCCTCGACAGACGCCACtttggagttttggttttttttataatctagatgctctatttataatctatgtagttttttttgtagttttttcttgttaaaatctataatctatgtgtgctataaaaaatattattatcaataagtatagaattaaataaaaacaatcaaccggaaacattaaaaaagattagtccttcctattacagtttgtctctgctgttacagtgctgtccctcctgttacttgtcaaaaatattgaaaaataatatccttaattgatccttatgactcgacttttgttaaatatactaactgcaaattactattttcaacatagttgtgaatccatgtcattgtgttatgtctttgtatttcaaaaatatagaacaatgtcatgttcattttgcaaatttgaagaagagttaacttagaagaaaaaaagtatgtattatgttttacaacataaagccttttgtaaaacgcataatttctataattgtagcgtaattatgtcatgaaatataatatatatcttctttgatataaaatatttcaattttattaaagtaacaccagggacatatttttcgagctgtagcatgtataacccttgaattacaaatggaacaatttgttttttgcatttttgtcgtttattgcgtatttattagataattcaacaataagatgaaaaaaattacatataaggtcatcattttttaagtttattcattccgaaataaagacagttttttctgaaatgacccat
gi|14 : TCAATTTACAGTTTTTTATAATCAGTAAGCATACATTAAAGTCGCATCTTTTGATTTAAGTA-ACACGAA-GGACAATAAAGGGTAACATGAAGTGCAAAAAGTGTACA-TTAATCGATTTTATCCAA
gi|3 : GATATCACAAAAAGTCCTGTTTAAAGAAAAACGTTTCT-GAAAGTTTTTGGGTCCATAA--GCAACAGACT--AATTATTCCAGGT-AACATAACGGACAGTTAGGATTTTTCGGTGTTTCTTGGGGTTTTAT-TTTTTTTTTTTAATCTAAATCGCTCTATATTTA-TCTACCTTGTAG--TTTTTTGGCGTGTTTTATC-----TGTTAGATCTAAATGCTCTCCATATATATATTATGTGGTGTCTAT-AACAAAAATCATGTATTAAATC-A-TAAGT-CA-AATCAG-GAAAAA-TCAC---CACGAAATCATT-AAAAGGAATTAGTTCCTTCACATGTTAC--CCCTGTCTTAGCATGTTCCTAGATTCTCTG-TTTGAATTGCTGGTCCCTCCTGTTACTC--GTCAAG---AGT-AT--AAAAATA---AGATATCAA--AT--ATCAGCTAATAGCACTCGAGGCTCTCGTTGTTAAA-AT----GCTTGCAAATATT--TGAAATTTTTCAACATTAGTTATGA-A-CCATAC-CATT----GT-GTTTATGTCTTTGCATTTTG-AA-AATA-TAGAA-AATGTT--AAGT--TCAAAT--TTT-GC-AAATTT-TGAA--AGAAG--AGTT-----AAACTAGAT------AC-GATGAAAA---GATCAATATATAT-TGTACTA-T-----G-T------CA--CCA--TAAGAGCC-TT--T--TGAAA---CGCATAACATTTCTATAATTG-TATGGCGTAA-TATAATTTCAATGAAATGAA---TATTAATAGAT-ATCTTCTTT---GAT-ATA-AA-A--TAATATAATTTTTTTATTA-TTCAGTT-TTA-TTAAAG--TAACACCAGGGACA--CACTTTCC-A-G--CTGT--AGC-ATGTATAATC--------CTTCAGAT-A----T--CTA-CGA-AA-TGG-AACA--ATT--TGTTTTTT-----GCA-T-TTTTGTTGTT-T--ATTGCAGTAT--TTAAT-------TAG-ATAA-TCAA-AT--TA-AAAATG-AAAAAATTAC--A--A-ATAAGCGTCA-T-CAT-TT-TT
gi|15 : aatgcaaaaatagattagctcaTTT-GGAGTTTT--------------------GGTTTTTTTTTTAAATCTAAA--GCTCTATATTTAATCTA---TGTAGCTTTTTTTGGTAGTTTTT-TTATG--A---AAATCTAAATGCTC--TATATATAACCTATGT
gi|16 : TTTTTTAAATCTAAAT-GCTCTATATATAATGTA---TGT
gi|16 : TTTT-T----------AAATCTAAATGCTC--TATATATAATGTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-ACTAAGTATTGGATTAATAAAAAAACCAT---C-CGAAAACATT-AAAAAGgtgctataaaaatattattatcactaagtattggattaataaaaaaaccatccgaaaacattaaaaag
gi|3 : t-AG------TG-T-----------GTCCCTGGTGTTACTTTAATAAAACTGAATAATAAAAAAATT---A--TATTATT-
gi|7 : aatgcaaaaatagattagctcagatatcacaaaaagtcctgtttaaagaaaaacgtttctgaaagtttttgggtccataagcaacagactaattattccaggtaacataacggacagttaggatttttcggtgtttcttggggttttattttttttttttaatctaaatcgctctatatttatctaccttgtagttttttggcgtgttttatctgttagatctaaatgctctccatatatatattatgtggtgtctataacaaaaatcatgtattaaatcataagtcaaatcaggaaaaatcaccacgaaatcattaaaaggaattagttccttcacatgttacccctgtcttagcatgttcctagattctctgtttgaattgctggtccctcctgttactcgtcaagagtataaaaataagatatcaaatatcagctaatagcactcgaggctctcgttgttaaaatgcttgcaaatatttgaaatttttcaacattagttatgaaccataccattgtgtttatgtctttgcattttgaaaatatagaaaatgttaagttcaaattttgcaaattttgaaagaagagttaaactagatacgatgaaaagatcaatatatattgtactatgtcaccataagagccttttgaaacgcataacatttctataattgtatggcgtaatataatttcaatgaaatgaatattaatagatatcttctttgatataaTCCTTACCCTTACTT--GTCAGT---TAT-ATT----AATTTTTA--TGTGATT-ATTGATCA-CTAACGAT-CTTGA-----TA-TTGT-ACATGT----ATT-GCAAAT--TATA---ATTCTTTAAC-ATAGTTACAATA-TTACAT-CAGT----GT-C-TAATATCTTTGGATGTCT-TA-AATG-GAGAACAATGTA--AAAC--TTAA----TTTTGC-AATATA-TG-AGTAGAAGCTAGGT-----A---TAT--------AT-GACAAAAA---G--C---ATATGC-------ACT-----G-TTT---GTA--GCAAATAA-TTTC-TT--TCCTATTC---TTCAAT--ATTTCTATTATT---A--GCATAT-T-T-TTGCC-AAAAAAGGAG---TAA------AT-ATTTTGTTT---GATCAA--AA-A--TTA--------------TA-TCTAATT-TAGTATGA----TGACACCAAAGACA--CATGTTTC-A-G--CTGT--AAT-ATGTA-AA-C--------TCT--TTT-A----TTGCTA-TTA-AA-TGG-GTCA--ATT--CATTTATT-----GCATA-TTTGATT-TT-C--GTCGCAGT-T--TGAAT-------TAG-TTCG-TCAA-AA--TTAAACATG-CTAAAAGTCC--AATATATAAGACTTA-T-GAT-TT-TGTT---TT---ACCTCT-ATCATA--TTCT-T-GAG-AA---A-CATATTTTG--GAAAttccagctgtagcatgtataatccttcagatatctacgaaatggaacaatttgttttttgcatttttgttgtttattgcagtatttaattagataatcaaattaaaaatgaaaaaattacaaataagcgtcatcattttt
gi|6 : TTGTGA-A-GC-TGTTCATTCGTGGTTG-TTGTTTCTATGTATATTC-AAGAATAGTAGAACAATGTCCGATGTATCCAAGCTTTTT-GCTAGATCTGTG-AG-AGAAG--AGTTGGTGCACCTTAGGGTTATTTACAGAACCAAACTTAGTC---AGGTATAT----TA-TCGTTGG-TTTGGGACATTACA--TAAGAGCC-TTGTTG-AAAAAATTCGCATATTATTTTTATAATTGCTA--GCGTAAAT-T-ATGTCGATGAAATGAAAGATATG-----ATGATCTTCTTTGATTAT-ATGGAACA--TAAA-------------TA-TTCAATTGCTATT--AAGCTTAACACCAGGGACAAGT-TTTTTC-ATGCCCTATTGAGCTATGCATAA-TATGGGTTACTT--G-T-AAGGGT--CTATCAATAACTGGTAACACCATT--TGTTTTTTTTGGGGCATTATTGTGTTGTTGTGAATTTTGGCATTGTTGGTTGATTCCTAGAATAA-TCAA-AT--A--AAGATG-AAGAAATTACTTT--ATAAAAGCGTCA-TCCAT-TTCTTTA---TT---A----T-ATCATACGTTCG-ATAAT-AACTGAGCA-TTTTTGTTGAAAtgactcatata
gi|10 : TTG-TA--GCGTAA-T-TTATGTCCATGAA-TGAA---TAT------AT-ATCTTCTTT---GAT-CT--AA-AAATGA--------------TA-TTCAATT-TTATT--AAG--TACCACC-GGGACA--TATTTTTC-A-G--CTGT--AGC-ATGTATAA----------CTT--GATAA----T--CTA-CGA-TA-TGG-AACA--ATTTGT-TTTTTT-----GCA-T-TTTTGTTGTT-TA-ATTGCAATAT--TTAGT-------TAG-ATAA-TCAA-AA--TA-AAGATG----AAATTA---A--ATATAAGCGTCA-T-CA--TT-TTTG---TT---A----T-cccatgaccca
gi|17 : aaaaatgtctttatttTAT--TTAGT-------TAG-ATAA-TCAA-AAATC--AAGATG-AAAAAGATAC--A--ATATAAGCGTCATT-CATCTT-TTTG---TCGGGA----TAATC-TA--TACGAA-AATAAA--GA-CA-TTTTTT--GAAA
gi|20 : T-TTTAG--TT---A----T-ATCATA--TCCG-A-AATAAA--GA-TA-TTTTTT--GAAAATGACC
Alignments
lowQualScore : 1111 1 22222 1 1 22222 1111 2222 111 1 11111 11 1111 1111 11 111 1 111111 111 11111 111 111111111 11 2 222 111 11111 222222222 11111 333333333 111 33333333333333 11 222222222 1 55555555555555555555555555555555555555555555555 1 2222222222 11 111 11 11 11 2222 11 222 11 111111111111 11 222222222 1 111 1 1 2222 333 222 1 22 1 2 222 1 1 1 2 1 1 2 1 1 11 2 1 2 1 222 222 333 33333333333 55555 22 6666666666666 88888888888888888888 11 11 11 111 1 1 44444444 11 1 1 1 111 1 1 11 111 1 11 2222 1 2 333 11111 2 1 888888888888888888888 11 2222222 11 11 22 22222222 2222 1 111111 1 1 1111 11 11 222 11 22 11 22222 444444444 11 22222222222 333333333333333 111 11 11 1 11 111 33 1 222222 1111 444444444444444444444444444 11 3333333333 11111111111111 11111 1111 1111111 22222 11111 111 11111111 111 111 111
lowQualScore : 2222 5 5 1 55555 5 1 1 5 5 22222 2222 5 2222 5 77 000 5 1 44444 5 33 1111 5 5 5 66 5 0000 5 5 5 5 5 55 5 66 5 33 5 000 5 5 1 77 77 5 1 777777 5 111 2 33333 6 6 111 6 6 6 99 6 6 555555555 6 666 55 7 3 6 8 5 77 333 77 000 66666 6 666666666 6 66666 6 333333333 111 11111111111111 6 6 7 44 6 99 111111111 3 99 6 44444444444444444444444444444444444444444444444 0 8888888888 99 555 6 0 0 0 88 8 3 8 8 00 8 8 8 8 11 8 8 8 11 5555 11 6 222 11 8 8 888888888888 11 8 8 0 8 999999999 0 0 444 0 0 0 0 7 9999 7 333 888 3 5 77 5 0 111 5 3 5 5 0 5 5 4 0 5 3 2 2 7 1 7 7 7 0 7 5 1 6 55 0 7 3 5 0 5 111 4 999 777 1 0 66666666666 00000 6 11 7 6 6666666666666 1 1 11111111111111111111 00 11 33 1 3 777 0 0 3 44444444 0 11 8 8 0 0 0 777 0 0 33 111 3 2 0 33 2 4444 3 2 3 777 99999 1 3 1 3 777777777777777777777 1 1 22 3333333 33 3 33 2 00 55555555 3 3 1111 0 333 888888 3 0 0 2 8 8 0 8 7777 8 8 1 3 8 8 11 1 11 333 11 8 6 8 11 11 00000 5 555555555 3 1 11 11111111111 222222222222222 8 0 444 11 11 5 8 11 5 444 0 22 6 99 6 6 888 3 6 6 222222 4444 6 6 555555555555555555555555555 6 6 77 99 4 99 6 6 99 99 6 8888888888 88888888888888 6 5 6 6 6 99 77 66666 999 3 6666 9 77 1 8888888 5 5 5 44444 77 77777 0 5 5 5 5 555 33333333 5 99 99 555 111 99 99 1 111
lowQualScore : .... . . . ..... . . . . . ..... .... . .... . .. ... . . ..... . .. .... . . . .. . .... . . . . . .. . .. . .. . ... . . . .. .. . . ...... . ... . ..... . . ... . . . .. . . ......... . ... .. . . . . . .. ... .. ... ..... . ......... . ..... . ......... ... .............. . . . .. . .. ......... . .. . ............................................... . .......... .. ... . . . . .. . . . . .. . . . . .. . . . .. .... .. . ... .. . . ............ .. . . . . ......... . . ... . . . . . .... . ... ... . . .. . . ... . . . . . . . . . . . . . . . . . . . . . . . .. . . . . . . ... . ... ... . . ........... ..... . .. . . ............. . . .................... .. .. .. . . ... . . . ........ . .. . . . . . ... . . .. ... . . . .. . .... . . . ... ..... . . . . ..................... . . .. ....... .. . .. . .. ........ . . .... . ... ...... . . . . . . . . .... . . . . . . .. . .. ... .. . . . .. .. ..... . ......... . . .. ........... ............... . . ... .. .. . . .. . ... . .. . .. . . ... . . . ...... .... . . ........................... . . .. .. . .. . . .. .. . .......... .............. . . . . . .. .. ..... ... . .... . .. . ....... . . . ..... .. ..... . . . . . ... ........ . .. .. ... ... .. .. . ...
lowQualScore : 1111 7 7 4 77777 7 4 4 7 7 99999 1111 7 0000 7 99 000 7 4 33333 7 66 6666 0 0 0 99 0 6666 0 0 0 0 0 99 0 99 0 88 7 000 7 7 4 99 99 7 4 333333 7 777 5 33333 7 7 777 7 7 7 22 7 7 888888888 7 888 88 3 8 7 0 7 99 666 99 000 77777 7 777777777 7 77777 7 333333333 777 88888888888888 7 7 3 00 7 22 888888888 3 22 7 88888888888888888888888888888888888888888888888 0 4444444444 44 888 0 8 8 8 88 0 2 0 0 88 0 0 0 0 00 0 0 0 00 0000 00 0 000 00 0 0 000000000000 00 0 0 8 0 888888888 6 8 000 8 0 0 7 3 0000 3 777 333 7 0 55 5 0 555 5 0 5 5 0 0 5 0 0 5 0 5 5 3 0 3 3 3 7 3 0 0 7 00 7 3 7 5 0 0 555 0 777 000 0 7 77777777777 77777 7 33 3 7 0000000000000 0 0 22222222222222222222 22 00 22 0 2 555 0 0 2 88888888 8 00 0 2 0 0 0 555 0 0 88 000 2 5 0 88 5 5555 5 3 7 333 00000 0 7 0 3 000000000000000000000 0 2 00 2222222 22 2 22 0 55 88888888 2 2 2222 0 555 555555 2 0 0 8 0 0 8 0 0000 0 0 0 2 0 0 00 0 00 666 00 0 0 0 22 00 00000 6 444444444 2 0 00 00000000000 222222222222222 0 8 000 00 00 0 0 00 0 000 8 44 7 22 7 7 777 3 7 0 777777 2222 7 7 888888888888888888888888888 7 7 00 22 2 22 7 7 22 22 7 5555555555 00000000000000 7 2 7 7 7 22 77 77777 333 2 0000 0 99 7 6666666 7 7 7 00000 11 44444 7 7 7 7 0 777 11111111 7 22 22 000 777 22 22 0 777
consensus : ATGTTGTG----GT-CA-T-CGCATA--T-TATT-TAT-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT---TAAA-T--G---A-TTT-GTTG-----AA-TGTG--ATATTTCAT-TT-ACTAACCTTGA-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-AAGA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATA---T-TG-CATGTCCC---AAATGTT--A--TTTTCAATAC-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAA--TA-A---TA-TTTCAT-T-A--TGTAAAACTATATT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-ATAAAA-TG-TTAC--TT-----T---TT-CA--GGTAA-TCT-------TAATCC-TTGT----------ACTT------G-AAA--ATATGTCCTTGCGTNTT-------TACC-GAAAAAGAAAAACCTGTGTAATGAATCAATATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTA-T-TCATG-GAAAATGA-AAG--T-A-T-A--GGC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--AAAA--TT-TCAA-CAAAG-AT--------ATGTAATTATACACT---TCCGTATTTTCTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAATATGATGATAGTCTACCTAAATTGGATATCT-AAAATGTTTTTACAGG--GGTAATTTTGTTGGAATGAATT-GGCGTGTCCTCGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTCCGCCGCGTGTTACTTTTTTAAAACGTAAACACCATGGGACATTAAAGACAAAACAATGCCGTTATTNTATTATTTATTAGAAATAATATTCATGATTATTGTGATTCCANACTTTTCTTAAGAACNTATGTAANTANATTGAATCAATTTACAGTTTTGTATAATCAGTAAGCATACATTAAAGTCGCGTCTTTTGATTTAAGTAAACACGAA-GGACAATANAGGGTAACATGAAGTACAAAAAGTGTACA-TTAATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGAGCGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTNGCAATATGGTTGATCGATATC-CAAAAAGTC---TTTAAAAAAAAA-GAATCTTGC-AGCTTTTGG-----TAACAGCAACGGACTGTAAT-------GGT-AACATTAAGGACA--------------------TTTGGAGTTTT-GTTTTTTTTTTN-AATCTAGAT-GCTCTATATTTAATCTA---TGTAG-TTTTTTTG-GTAGTTTTTTC-TG--A-AAATCTAAATGCTCT--ATATATA-ATCTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-A-TAAGTATAGAATTAA-AAAAAA--ACNAT---CCGGAANCATTAAAAAGGATTAG-TCCTTC-C-TGTTACAGCTTTGTCTCTGC-TGTTAC-AG------TG-T-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCATT-ATTGATCA-CTAATGAT-CTCGA----CTT-TTGTTAAATAT----ACT-GCAAATATT---ACTATTTTTCAA-CAT-AGTTGTGA-A-CCATGT-CATT----GT-GTT-ATGTCTTTGTATNTTNAA-AATA-TAGAACAATGTC--ATGT--TCAA-TTTT--GC-AAATTT-TGAG-AGAAG--AGTT-----AACTTAGG-------ACGANAA--AAA---GGTCA---TGTAT-T----TAT-----G-TTT---ACA--ACA--TAAGAGCC-T--TTGTAAAA---CGCATA-TATTTCTATAATTG-TA--GCGT-AAT-T-A-TGTC-A-TGAAATGAA-----ATATAT----ATCTTCTTTGA-T-ATA---AA------T---AAT---------A-TTCAATT-TTATTTAAAG--TAACACCAGGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAA-C--------CTT--GAT-A----T--CTA-CGA-AA-TGG-AACA--ATTTG-TTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCAGTAT--TTAGT-------TAG-ATAA-TCAA-AA--T--AAGATG-AAAAAATTAC--A--ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCC--G-A-AATAA---AGACA--TTTT--TTGAAA---ATGACC
Reference ( family-3707 ) : ATGTTGTG----GT-CA-T-CGCATA--T-TATT-TAT-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT---TAAA-T--G---A-TTT-GTTG-----AA-TGTG--ATATTTCAT-TT-ACTAACCTTGA-CA-TG-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-AAGA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATA---T-TG-CATGTCCC---AAATGTT--A--TTTTCAATAC-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAA--TA-A---TA-TTTCAT-T-A--TGTAAAACTATATTATTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-ATAAAA-TG-TTAC--TT-----T---TT-CA--GGTAA-TCT-------TAATCC-TTGTA---------ACTT------G-AAA--ATATGTCCTTGCGTNTT-------TACC-GAAAAAGAAANACCTGTGTAATGAATCAATATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTA-T-TCATG-GAAAATGA-AAG--T-A-T-A--GGC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--AAAA--TT-TCAA-CAAAG-AT--------ATGTAATTATACACT---TCCGTATTTTCTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAATATGATGATAGTCTACCTAAACTGGATATCTAAAAATGTTTTTACAGGGCGGTAATTTTGTTGGAATGAATTGGGCGTGTCCTCGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTCCGC--CGTGTTACTTTTTTAAAACGT-AACACCATGGGACATTAAAGACAAAACAATGCCGTTATTTTATTATTTATTAGAAATAA-ATTCATGATTATTGTGATTCCATAC-TTTCTTAAGAACTTATATAACTAGATTGAATCAATTTACAGTTTTNTATAATCAGTAAGCATACATTAAAGTCGCGTCTTTTGATTTAAGTAAACACGAACGGACAATANAGGGNNACATGAAGTGCAAAAAGTGTACATTTAATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGA-CGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTTGCAATATGGTTGATCGATATCNCAAAAAGTCCTGTTTNAAGAAAAACGNNTCTTGNAAGCTTTTGGGTCCATAACAGNAACGGACTGTAATTATTCCAGGTAAACATNANGGACA--------------------TTTGGAGTTTT-GTTTTTTTTTTN-AATCTAAAT-GCTCTATATNTAATCTA---TGTAG-TTTTTTTG-GTAGTTTTTTC-TG--A-AAATCTAAATGCTCT--ATATATA-ATCTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-A-TAAGTATAGAATTAA-AAAAAA--ACCAT---CCGAAAACATTAAAAAGAATTAGTTCCTTCACATGTTACAGCCCTGTCTCNGCATGTTNC-AG------TG-T-----------GTCCCTNCTGTTACTTGTCAAAAATATTGAAAAATN---A--TATCATT-ATTGATCA-CTAACGAC-CTCGA----CTN-TTGTTAAATAT----ACT-GCAAATATT---ACTATTTTTCAA-CAT-AGTTGCGA-A-CCATGT-CATT----GT-GTT-ATGTCTTTGTATNTTCAA-AATA-TAGAACAATGTC--ANGT--TCAAGCTTT--GC-AAATTT-TGAG-AGAAG--AGTT-----AACTTAGG-------ACGANAA--AAA---GGTCA---TGTAT-T----TAT-----G-TTT---ACA--ACA--TAAGAGCC-T--TTGTAAAA---CGCATA-CATTTCTATAATTG-TA--GCGT-AAT-T-A-TGTC-A-TGAAATGAA-----ATATAT----ATCTTCTTTGA-T-ATA---AA------T---AAT---------A-TTCAATT-TTATTTAAAG--TAACACCAGGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAA-C--------CTT--GAT-A----T--CTA-CGA-AA-TGG-AACA--ATTTG-TTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCGGTAT--TTAGT-------TAG-ATAA-TCAA-AA--T--AAGATG-AAAAAATTAC--A--ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCC--G-A-AATAA---AGACA--TTTT--TNGAAA---ATGACC
gi|1 : ATGTTGTG----GT-CA-T-CGCAT---T-TATT-TAA-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT----AAA-T--G---A-TTG-GTTG-----AA-TGTG--ATATTTCAT-TT-AGTAACCTTGA-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-AAGG-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-TA--TT--TGG-TCAAATATA---T--G-CATGTCCC---AAATGTT--A--TTTTCAATAC-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAAA-TA-A---TA-TTTCAT-T-A--TGTAAAACTATATT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---ACA------T-------TG-TCT-ATAAT--TG-TTAT--TT-----T---TTTCA--GGTAA-TC---------AATC----------------------------------TATG---------CTT-------TACA-AAAAAATAAAACACTGTGTA-TGAATCAATATA-TCC-CTTTGCGCACCTCATATCTGCACGTCATCCTGAATAC-TTA-TGTCATG-AGAAAT-A-AAG--TGA-T-A--GGCC---GAGGG--AAAGTTA--CTGAAAGGG-TGGATAG----AA---A--AGAAATTT-TCAAACAAAGGAT--------ATTTAATTATACACT---TCCGTATTTTCTGATGTTGTC-CTTAATGT-TACCATCGAAATAAACTATAACAATATGATGATAGTCTACCTAAATTGGATATCTAAA--TGTTTT-ACAGAGCGGTAATTTTGTTGGAATGAATTGG-CGTGTCCTTGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTCCGC--CGTGTTACTTTTTTAAAACGT-AACACCATGGGACATTAAAGACAAAACAATGCCGTTATTTTATTATTTATTAGAAATAA-ATTCATGATTATTGTGATTCCATAC-TTTCTTAAGAACTTATATAACTAGATTGAATCAATTTACAGTTTTGTATAATCAGTAAGCATACATTAAAGTCACGTCTTTTGATTTAAGTAAACACGAACGGACAATACAGGG-TACATGAAGTAC--AAAGTGTACA-TTAATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGA-CGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTTGCAATATGGTTGATCGATATTC--AAAAGTC---TTTTAAAAAAGA--AATTTTGC-AGCTTTTGG-----TAACAG-AACGG-CTGTAAT-------GGT-AACATTAAGGACA--------------------TTTGGAGTTTT-GGTTTTTTTTAT-AATCTAGAT-GCTCTATTTATAATCTA---TGTAG-TTTTTTTT-GTAGTTTTTTCTTGTTA-AAATC---------------TATA-ATCTATGTG-TG-CTATAAA---AAAT-AT-TATTA--TCAA-TAAGTATAGAATTAA-ATAAAA--ACAATCAACCGGAAACATTAAAAAAGATTAG-TCCTTC-C-TATTACAG-TTTGTCTCTGC-TGTTAC-AG------TGCT-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCCTTAATTGATC--CTTATGA--CTCGA----CTT-TTGTTAAATATACTAACT-GCAA--ATT---ACTA-TTTTCAA-CAT-AGTTGTGA-ATCCATGT-CATT----GT-GTT-ATGTCTTTGTATTTCAAA-AATA-TAGAACAATGTC--ATGT--TCA--TTTT--GC-AAA-TT-TGA--AGAAG--AGTT-----AACTTAGA-------A-GAAAA--AAA---G--TA---TGTA--T----TAT-----GTTTT---ACA--ACA--TAA-AGCCTT--TTGTAAAA---CGCATA--ATTTCTATAATTG-TA--GCGT-AAT-T-A-TGTC-A-TGAAATATA-----ATATAT----ATCTTCTTTGA-T-ATA---A-----------AAT---------ATTTCAATT-TTA-TTAAAG--TAACACCAGGGACATA--TTTTTCGA-G--CTGT--AGC-ATGTATAACC--------CTT--GA--A----T---TA-C-A-AA-TGG-AACA--ATTTG-TTTTTT-----GCA-T-TTTTGTCGTT-T--ATTGC-GTAT--TTA-T-------TAG-ATAATTCAACAA--T--AAGATGAAAAAAATTAC-----ATATAAG-GTCA-T-CAT-TT-TTTAAGTTT---A----T--TCAT---TCC--G-A-AATAA---AGACAGTTTTT--TCTGAA---ATGACC
gi|10 : tatatgggtcgatttcaaaaaatgtctaaTTG-TA--GCGT-AAT-TTA-TGTCCA-TGAA-TGAA------TATAT----ATCTTCTTTGA-T-CTA---AAAA----T---GAT---------A-TTCAATT-TTATT--AAG--TACCACC-GGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAA----------CTT--GATAA----T--CTA-CGA-TA-TGG-AACA--ATTTGTTTTTTT-----GCA-T-TTTTGTTGTT-TA-ATTGCAATAT--TTAGT-------TAG-ATAA-TCAA-AA--TA-AAGATG----AAATTA---A--ATATAAGCGTCA-T-CA--TT-TTTG---TT---A----T-cat
gi|11 : aaaaatgtctttatttATGTTGTG----GT-CA-T-CGCA-A--T-TATT-TAA-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT----AAA-T--G---A-TTT-GTTG-----AA-TGTG--ATATTTCAT-TT-AGTAACCTTGA-CA-TA-AT--GGA-AA-CACAT----TAC-A-ACGATTG-T-AAGA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATA-----TG-CATGTCCC---AAATGT------TTTTCAATAC-A-T---T
gi|12 : tgggtcgatttcaaaaaatgtctaaATGTTGTG----GC-CAAT-C-CAT---T-TATT-TATCTAAC-CAACTTA-TAGTTG--T-AAAC----GT-TTT----AAA-TTGG---A-TTT-GTTGTCGATAA-TGTG--ATATTTCAT-T---CTAAACCTGA-CA-TA-AT--GGATAAACACAT--------A-ACGATTGCT-AAGAGA-TT-AATA--T-TTTTTA-ACAA---TTCAT-ATG-CCAA--TT--TGG-TCAAATATA---T-TG-C-TGTC
gi|13 : tatatggtcgatttcaaaaaatgtctaaAAG-TC-GAAA-ATATG--C-AGGAA-AAAA--TA-A---TA-TTTCAT-T-A--TGTAAAACTATATT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGTAACAAA------TTTTACTATGTTCT-AT-AAA-TG-TAAA--TT-----TCTATT-CA--GATAA-ATC-------TAATCG-TTGT----------ACTT------GAAAA--ATATGTCC
gi|14 : TCAATTTACAGTTTTTTATAATCAGTAAGCATACATTAAAGTCGCATCTTTTGATTTAAGT-AACACGAA-GGACAATAAAGGGTAACATGAAGTGCAAAAAGTGTACA-TTAATCGATTTTATCCAA
gi|15 : --------------------TTTGGAGTTTTGGTTTTTTTTTTA-AATCTAAA--GCTCTATATTTAATCTA---TGTAGCTTTTTTTG-GTAGTTTTTTTATG--A-AAATCTAAATGCTCT--ATATATA-ACCTATGT
gi|16 : TTTTTT--------AAATCTAAATGCTCT--ATATATA-ATGTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-ACTAAGTATTGGATTAATAAAAAA--ACCAT---CCGAAAACATTAAAAAG
gi|17 : TAT--TTAGT-------TAG-ATAA-TCAA-AAATC--AAGATG-AAAAAGATAC--A--ATATAAGCGTCATT-CATCTT-TTTG---TCGGGA----TAATC-TA--TAC--GAA-AATAA---AGACA--TTTT--TTGAAA---
gi|18 : CTATACCAATATGATGATAGTCTACCTAAACTGGATATCT-AAAATGTTTTTACAG---GGTAATTTTATTGAAATGAATT-GGCGTGTCCTCGACAGACGCCAC
gi|19 : CTAACCTTGA-CA-TG-AT--GGA-AAACACATTATGTAC-A-ACGATTG-T-AAGA-A-CT-AATA--T-TTT--
gi|2 : ATGTTGTG----GC-CA-TGCGCATAAATATATT-TAT-TAGC-TAACT-A-TATTT-----AAAC----GT-TTT---TAAA-T--G---AATTT-GTTG-----GA-TGTG--ATATTTCAT-TT-ACTAACCTT-A-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-A-GA-A-TT-AATA--T-TTT--G-ACAA---TTAAT-ATG-C-AA--TT--TGG-TCAAATATA---T-TG-CATGTCCC---AAATGTT--A--TTTTCAATAA-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AGAA--TA-A---TA-TTTCAT-T-A--TGTAAAAC---ATTATTTGAAAAG-AT-CTG-AAAT--AAAA---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-AT-AAA-TG-TTAC--AT-----T---TT-CA--GGTAA-TCT-------TAAT-C-TTG-----------ACTT------G-AAA--ATATGTCCTT-CGTGTT-------TACC-CAAAAAGAAAT-TCTGTGTAATGAATC-ATATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTATT-TCATG-GGAAATGA-AAG--T-AGT-A--GG-----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--AAAA--TT-TTAA-CAAAG-AT--------ATG-AATTATACACT---TCCGTA-TTTCTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAGTATGATGATAGTCTACCTAAATTGGA-ATCT---AATGTTTTTACAGG--GGTAATTTTGTTGGAATGAATT--GCGTGTCCTAGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGT-CGCCGCGTGTTAC-TTTTTAAAACGTAAACACC-T-GGACATTAAAGAC-AAACAATGCCGTTATTGTATTATTTA-TAG-AATAATATTCATGATTATT-TGA-TCCAAACTTTTCTTAAG-ACGTATGTAAATATATTGAATCAA-TTACAGTGTTGTATAATCAGT-AGCA-ATATT-AAGTCACGTCTTTTGATTTAAGTATACACGAAAGGACAATAGA-GGTAACATGAAGTACAAAAAGTGTACATTTAATCGATTTTATCCAACTGAATATTTCAATA-TTTTCAATACAGATGGAGCGTAATT-GATATAATTGTTGCAAATAGTTATAAATA---ATTAACAATATAGTTGATCGATAT--TAAAAAGTC---TTTAAAAAAAAAGAAAT-TTGC-AGCTTTTGG-----TAACAGC-ACGGACTGTAAT-------GGT--ACATTAAGGACA--------------------TTTGGATTTTT-TTTTTTTTTTTA-AATTTAGAT-GCTCTATATTTAATCTA---TGTAG-GTTCTTTG-GTAGATTTTTC-----A-AAATCTAAATGCTCC--ATATATA-ATTTATGTG-TG-CTAT-AA---AAAT-AT-TATCA--TC-A-TAAGTATAGAATTAA-AAAAAA--ATAAC---CCGGAACAATTAAAAAG-ATTAG-TCCTTC-C-TGTTACAGTTTTGTCTCTGC-TGTTAC-AG------TG-T-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCATT-ATTGATCA-CTAATGAT-CTCGA----CTT-TTGTTAAATAT----ACT-GCAGATATT---ACTATTTTTCAACCAT-AGTTGTGA-A-CCATGT-CATT----GT-GTT-ATGTCTTTGTATATTCAA-AATA-TAGAACAATGTC--ATGT--TCAA--TTT--GC-AAATTT-TGA--AGAAG--AGTT-----AACTTA-G-------ACGAAAA--AAA---AGTCA---TATAT-T----TAT-----G-TTT---ACA--ACA--TAA-AGCC-T--TTGTAGAA---CGCATA--ATTTCTATAATTG-TA--GCGT-AAT-T-A-TGTC-A-TAAAATG-A-----TTATAT----ATCTTCTTTTA-T-ATA---AA------T---AAT---------A-TTCAATT-TTATTTAAAG--TAACACCAGGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAA-C--------CTT--GAT-A----T--CTA-CGA-AA-TGG-AACA--ATTT--TTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCAGTAT--TTAGT-------TAG-ATAA-TCAA-AA--T--AAGATG-AAAAAATTAC--A--ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCC--G-G-AAT-A---AGACA--ATTT--TGGAAA---AGGACC
gi|20 : T-TTTAG--TT---A----T-ATCATA--TCC--G-A-AATAA---AGATA--TTTT--TTGAAA---ATGACC
gi|3 : GATATCACAAAAAGTCCTGTTTAAAGAAAAACGTTTCT-GAAAGTTTTTGGGTCCATAA--GCAACAGACT--AATTATTCCAGGTAA-CATAACGGACAGTTAGGATTTTTCGGTGTTTCTTGGGGTTTT-ATTTTTTTTTTTTAATCTAAATCGCTCTATATTTA-TCTACCTTGTAG-TTTTTTGGCGT-GTTTTATC-TG--TTAGATCTAAATGCTCTCCATATATATAT-TATGTGGTGTCTAT-AACAAAAATCATGTATTAAATC-A-TAAGT-CA-AATCAG-GAAAAATCACCA-----CGAAATCATTAAAAGGAATTAGTTCCTTCACATGTTAC--CCCTGTCTTAGCATGTTCCTAGATTCTCTG-TTTGAATTGCTGGTCCCTCCTGTTACTCGTCAAGAGTAT--AAAAATA---AGATATCAA--AT--ATCAGCTAATAGCACTCGAGGCTCTCGTTGTTAAA-AT----GCTTGCAAATATTTGAA--ATTTTTCAA-CATTAGTTATGA-A-CCATAC-CATT----GT-GTTTATGTCTTTGCATTTTGAA-AATA-TAGAA-AATGTT--AAGT--TCAAATTTT--GC-AAATTT-TGAA-AGAAG--AGTT-----AAACTAGAT------ACGATGA--AAA---GATCAATATATAT-TGTACTAT-----G-T------CA--CCA--TAAGAGCC-T--TT-TGAAA---CGCATAACATTTCTATAATTG-TATGGCGT-AATAT-AATTTC-AATGAAATGAATATTAATAGAT----ATCTTCTTTGA-T-ATA---AAATAATAT---AATTTTTTTATTA-TTCAGTT-TTATT-AAAG--TAACACCAGGGACACA--CTTTCC-A-G--CTGT--AGC-ATGTATAATC--------CTTCAGAT-A----T--CTA-CGA-AA-TGG-AACA--ATTTG-TTTTTT-----GCATT-TT-TGTTGTT-T--ATTGCAGTAT--TTAAT-------TAG-ATAA-TCAA-AT--TA-AAAATG-AAAAAATTAC--A--A-ATAAGCGTCA-T-CAT-TT-TTca
gi|4 : aatgcaaaaatagattagctcaTTGTG----AT-CA-TTCGTATA--T-TATTATAT-------AA-T-A-CATT--------AC----GT-TTT---TAAA-T--G---A-TTTGGTTG-----AA-TGTGA-ATATTCCATAAA-ACTAACCTTGA-CACTGCAT--GG--ATACACAT----TAC-ATACGATTG-T-AAGA-AGCT-AATA--T-TTT--GAACAAATTTCCATCATG-CGGA--TT--TTG-TTCAATATA---C-TGCCATGTCCC---AAAT-TT--ATTTTTTCATTACTA-T---CGAGTTC-GAAA-ATATG--CTAAGAA-AAAA--AA-AACGTC-TTTCAT-TCAATTGTAAAGC-ATATTCTTT-AAAAG-A
gi|4 : tatatggcgtcgatttcaaaatgtctaaatG-GAAT--AAAGCG-GA--T---GG--C-TGACAG-C-T---------TCAA-CA-----AA-TTC--------TGT---AAT------T-------GG-TCT-TTAAA--TG-TT-C--TTCTTTCT---TT-CA--CATAA-TCT--------AATCG-T-GTA---------ACTT------G-AAACAATATGTCCTTGCATTGT-------TACA-GAAAAAGAAAAATCGTTGTATTGA-TCAATATAATCCTCTTTGTGCACCTCATATCTG-ACGTCATC-TGAATA-ATTA-T-TCATG-GAAATTGACAAG--T-A-T-ACTGCC----GAGGGACAAAGATCACCTGAA--GGATG-ATAGAGAAAG---A--AAAA--TTCTCAA-CAAAG-AT--------ATG-A--TATAAACTACATTCGTATATTCTGATGTTGTCTTTTAATGTATACCTATaatgtctagtttaaaagttactagcccttttgtgcaactgggaataaagcggatggctgacagcttcaacaaattctgtaattggtctttaaatgttcttctttctttcacataatctaatcgtgtaacttgaaacaatatgtccttgcattgttacagaaaaagaaaaatcgttgtattgatcaatataatcctctttgtgcacctcatatctgacgtcatctgaataattattcatggaaattgacaagtatactgccgagggacaaagatcacctgaaggatgatagagaaagaaaaattctcaacaaagatatgatataaactacattcgtatattctgatgttgtcttttaatgtatacctat
gi|5 : tatatggcgtcgatttcaaaatgtctaaatttgtgatcattcgtatattattatataatacattacgtttttaaatgatttggttgaatgtgaatattccataaaactaaccttgacactgcatggatacacattacatacgattgtaagaagctaatattttgaacaaatttccatcatgcggattttgttcaatatactgccatgtcccaaatttattttttcattactatcgagttcgaaaatatgctaagaaaaaaaaaacgtctttcattcaattgtaaagcatattctttaaaagaaatgtctagtttaaaagttactagcccttttgtgcaactgATGTTGTGCCCCGT-CA-T-CGCAT---T-TATT-TATATACCCTAACT-A-TATTTCCTT-AAACACCCGT-TTTAGCTAAACT--GCCCA-TTTTGTTG-----AA-TGTACTATATTTCAT-TTTACTCACCTTGA-C--TA-ATTGGAA-AAACAC-T----TAC-A-ACGATTG-CCAAGA-A-TTGAATACCT-TTTAAG-ACAA---TTC-T-ATGGC-GAATTT--TGG-TCAAATAAA---TATG-CATGTTCTCAAAAATGGT--A--ATTT--ATAC-A-TACATAAG-TCAGAAA-ATATGAAC-AAGAA-AAAA--AA-A---TAATTTCAT-T-AA-TGTAAAACTATATT-TTTGAAAAG-ATTCTG-AAATCTAAAGCCCGG--TCAAG---TGTGACAGGCAT---------TCAAACA-----AAATT---------TGT---AAA------T-------TG-TCT-ATAAAA-TGATTAC--TT-----T---TTGCA--AGTAAATCT-------AAATCCGTTGTT---------ACTT------G-AAA---TATGTCCTTTCGTG-T-------TACCAAAAAAAGAATAACCTGTGTAATGAATCAA-AT--TCC-CTTTG-GCACCTCATATCTG-ACGTCATC-TGAATA-ATTA-T-TCATGCGAAAATGA-AAGGTT-A-TAA--GGCGCAAGAGGG--AAAG-T---ATGAA--GG-TG-ATAG----AAAAGA--AAAA--TT-TCAA-C-AAG-AT---------TGTAATTATACACT---TCCGTATTTTCTCATGT
gi|6 : gaatcgatttcaaaaatgtcctaaTTGTGA-A-GC-TGTTCATTCGTGGTTGTT-GTTTCTATGTATATTCAAGAATAGTAGAACAATGTCCGATGTATCCAAGCTTTTTGCTAGATCTGTGAG-AGAAG--AGTTGGTGCACCTTAGGGTTATTTAC-AGAACCAAACTTAGTCA---GGTATAT----TATCGTTGG-TTTGGGACATTACA--TAAGAGCC-TTGTTGAAAAAATTCGCATATTATTTTTATAATTGCTA--GCGTAAAT-T-A-TGTCGA-TGAAATGAA-----AGATATGATGATCTTCTTTGATT-ATATGGAA------CATAAAT---------A-TTCAATTGCTATT--AAGCTTAACACCAGGGACA-AGTTTTTTC-ATGCCCTATTGAGCTATGCATAA-TATGGGTTACTT--G-T-AAGGGT--CTATCAATAACTGGTAACACCATTTG-TTTTTTTTGGGGCATTATTGTGTTGTTGTGAATTTTGGCATTGTTGGTTGATTCCTAGAATAA-TCAA-AT--A--AAGATG-AAGAAATTACTTT--ATAAAAGCGTCA-TCCAT-TTCTTTA---TT---A----T-ATCATACGTTC--G-ATAATAACTGAG-CA--TTTTTGTTGAAACCCATGACC
gi|7 : TCCTTACCCTTACTTGTCAGTTATATT----AATTTTTA--TGTGATT-ATTGATCA-CTAACGAT-CTTGA-----TA-TTGT-ACATGT----ATT-GCAAAT--T---ATAATTCTTTAA-CAT-AGTTACAATA-TTACAT-CAGT----GT-CTA-ATATCTTTGGATGTCTTA-AATG-GAGAACAATGTA--AAAC--TTAA-TTTT--GC-AATATA-TGAGTAGAAGCTAGGT-----A---TAT--------ATGACAA--AAA---GCATA---TGCAC-T------------G-TTT---GTA--GCAAATAATTTCT-T--TCCTATTC---TTCA-A-TATTTCTATTATT---A--GCAT-ATT-T-T-TGCC-A-AAAAA-GGA-----GTAAAT----ATTTTGTTTGA-TCAAA---AA------T---TAT---------A-TCTAATT-TAGTATGA----TGACACCAAAGACACA--TGTTTC-A-G--CTGT--AAT-ATGTA-AA-C--------TCT--TTT-A----TTGCTA-TTA-AA-TGG-GTCA--ATTCA-TTTATT-----GCATA-TTTGATT-TT-C--GTCGCAGT-T--TGAAT-------TAG-TTCG-TCAA-AA--TTAAACATG-CTAAAAGTCC--AATATATAAGACTTA-T-GAT-TT-TGTT---TT---ACCTCT-ATCATA--TTCTTG------AG---AAACA--TATT--TTGGAA---ATGACca
gi|8 : TA-AAAT--AACGA--GG--T---GATAT-TGACAG-CATCCAAGAGTCTCAA-CATTGTCAA-TTAAATAAAAATGT---GAAATTAGTT-------TG-TCTTATAAAACTG-TTACATTT-----C---TT-CATAGGTAA-TCTGTTTCTCTAATCC-TTGTATGCCTAATTACTTCGATAAG-AGAT-ATGTGTCCTTGCGTATGGGGAGGATACC--AAAAAGAAA-ACCTGTGTAATGAATCAATATA-GCC-CTTTGCGCATCTCATATCTG-ACGTCATC-TGAATACATTA-T-TCATG-GAAAATGA-AAG--T-A-T-A--GGC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---AAGAAAA--TT-TCAA-CAAAG-ATATGTACAAATGTAATTATACACT---TCCATATTTTCCGATGTTGTC-CTCAATGT-TACCAATGAAATAAACTATACCAATAtcatata
gi|9 : ctatgtataagatcatgatgaaatgtgattaTTCTG----GTGCA-T-CGTATC--TCTATT-TAT-TAACCTAATT-AATACTT---TGAAAC----ACGTTT---TAAA-T--G---A-TTT-GTTG-----AAATGTG--ATATTCCAT-TA-ACTA-CCTTGAACA-TG-AT--GGA-AAACACAT----TACAA-ACGATTG-T-AAGA-A----ACTA--TATTT--G-AGAA---TTCAT-ATG-C-GA--TTCGTGGATC-AATATACCGT-GG-CATGTCCA---TAATTTTAAA--TTTTCATTAC-ACT---TAAC-TT-GAAAGATATG--C-AAGAATAAAATTTATA---TC-TTTCATCC-A--TGTAACACTATACTTCTTGAAAAGAAT-CTGAAAAT--AAAC---GGAAT---G---C-TGA
Alignments
lowQualScore : 1111 1 22222 1 1 22222 1111 2222 111 1 11111 11 1111 1111 11 111 1 111111 111 11111 111 111111111 11 222 111 11111 222222222 11111 333333333 111 33333333333333 22 222222222 1 333333333 66666666666666666666666666666666666 1 2222222222 11 11 11 11 11 2222 11 222 11 111111111111 11 222222222 1 111 1 1 2222 1 11 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 222 2222 222 22 33333 4444444 88888888888888888888 11 11 11 111 1 1 44444444 11 1 1 1 111 1 1 11 111 1 11 2222 1 1 111 111 1 1 888888888888888888888 11 222222 11 11 11 22222222 2222 1 111111 1 1 1111 11 11 2222 22 11 22222 444444444 11 22222222222 333333333333333 111 11 11 1 11 111 222 1 222222 1111 1 444444444444444444444444444 11 3333333333 11111111111111 11111 1111 1111111 22222 11111 111 11111111 111 111 111 111
lowQualScore : 2222 5 5 1 55555 5 1 1 5 5 22222 2222 5 2222 5 77 000 5 1 44444 5 33 1111 5 5 5 66 5 0000 5 5 5 5 5 55 5 66 5 33 5 000 5 5 1 77 77 5 1 777777 5 111 2 33333 6 6 111 6 6 6 99 6 6 555555555 6 666 55 7 6 6 6 8 5 77 333 77 000 66666 6 666666666 6 66666 6 333333333 111 11111111111111 6 6 22 6 99 111111111 3 99 6 000000000 55555555555555555555555555555555555 0 8888888888 99 66 6 0 11 88 8 3 8 8 00 8 8 8 8 11 8 8 8 11 5555 11 6 222 11 8 8 888888888888 11 8 8 0 8 999999999 0 0 444 0 0 0 7 7 7 7 0000 6 3 5 77 5 5 5 5 5 1 5 5 5 5 5 1 5 5 1 1 1 7 7 7 7 0 7 6 1 6 7 7 3 5 5 5 111 1 8888 333 00 0 33333 6 6 7 7 6 3333333 7 11111111111111111111 00 11 33 3 777 0 0 3 44444444 0 11 8 8 0 0 0 777 0 0 33 111 3 2 0 33 1 4444 1 2 3 666 777 3 3 777777777777777777777 1 22 222222 33 3 33 77 66666666 3 3 1111 0 333 888888 3 0 0 8 8 0 8 7777 8 8 1 1 8 8 11 1 11 0 2222 8 6 8 11 11 00000 5 555555555 3 1 11 11111111111 222222222222222 8 0 444 11 11 5 8 11 5 444 0 333 6 99 6 6 888 3 6 6 222222 4444 3 555555555555555555555555555 6 6 77 99 4 99 6 6 99 99 6 8888888888 88888888888888 6 5 6 6 6 99 77 66666 999 3 6666 1 77 1 8888888 5 5 5 44444 77 77777 0 5 5 5 5 555 33333333 5 99 99 555 111 111 99 1 111
lowQualScore : .... . . . ..... . . . . . ..... .... . .... . .. ... . . ..... . .. .... . . . .. . .... . . . . . .. . .. . .. . ... . . . .. .. . . ...... . ... . ..... . . ... . . . .. . . ......... . ... .. . . . . . . .. ... .. ... ..... . ......... . ..... . ......... ... .............. . . .. . .. ......... . .. . ......... ................................... . .......... .. .. . . .. .. . . . . .. . . . . .. . . . .. .... .. . ... .. . . ............ .. . . . . ......... . . ... . . . . . . . .... . . . .. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . .... ... .. . ..... . . . . . ....... . .................... .. .. .. . ... . . . ........ . .. . . . . . ... . . .. ... . . . .. . .... . . . ... ... . . ..................... . .. ...... .. . .. .. ........ . . .... . ... ...... . . . . . . . .... . . . . . . .. . .. . .... . . . .. .. ..... . ......... . . .. ........... ............... . . ... .. .. . . .. . ... . ... . .. . . ... . . . ...... .... . ........................... . . .. .. . .. . . .. .. . .......... .............. . . . . . .. .. ..... ... . .... . .. . ....... . . . ..... .. ..... . . . . . ... ........ . .. .. ... ... ... .. . ...
lowQualScore : 1111 7 7 4 77777 7 4 4 7 7 99999 1111 7 0000 7 99 000 7 4 33333 7 66 6666 0 0 0 99 0 6666 0 0 0 0 0 99 0 99 0 88 7 000 7 7 4 99 99 7 4 333333 7 777 5 33333 7 7 777 7 7 7 22 7 7 888888888 7 888 88 3 7 7 7 0 7 99 666 99 000 77777 7 777777777 7 77777 7 333333333 777 88888888888888 7 7 22 7 22 888888888 3 22 7 888888888 33333333333333333333333333333333333 0 4444444444 44 88 0 8 66 88 0 2 0 0 88 0 0 0 0 00 0 0 0 00 0000 00 0 000 00 0 0 000000000000 00 0 0 8 0 888888888 6 8 000 8 0 0 3 3 3 3 3333 7 7 0 55 5 5 5 0 5 0 5 5 5 0 5 0 5 5 0 0 0 3 3 3 3 7 3 7 0 7 3 3 3 5 0 0 555 0 0000 333 00 7 33333 7 7 3 3 7 3333333 3 22222222222222222222 22 00 22 2 555 0 0 2 88888888 8 00 0 2 0 0 0 555 0 0 88 000 2 5 0 88 0 5555 0 0 3 777 777 3 3 000000000000000000000 2 00 222222 22 2 22 00 00000000 2 2 2222 0 555 555555 2 0 0 0 0 8 0 0000 0 0 0 0 0 0 00 4 00 8 8888 0 0 0 22 00 00000 6 444444444 2 0 00 00000000000 222222222222222 0 8 000 00 00 0 0 00 0 000 8 222 7 22 7 7 777 3 7 0 777777 2222 3 888888888888888888888888888 7 7 00 22 2 22 7 7 22 22 7 5555555555 00000000000000 7 2 7 7 7 22 77 77777 333 2 0000 7 99 7 6666666 7 7 7 00000 11 44444 7 7 7 7 0 777 11111111 7 22 22 000 777 777 22 7 777
consensus : ATGTTGTG----GT-CA-T-CGCATA--T-TATT-TAT-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT---TAAA-T--G---A-TTT-GTTG-----AA-TGTG--ATATTTCAT-TT-ACTAACCTTGA-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-AAGA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATA---T-TG-CATGTCCC---AAATGTT--A--TTTTCAATAC-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAA--TA-A---TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-ATAAAA-TG-TTAC--TT-----T---TT-CA--GGTAA-TCT-------TAATC--TTGT-A----------CTT------G-AAA--ATATGTCCTTGCGTNTT-------TACC-GAAAAAGAAAAACCTGTGTAATGAATCAATATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTAT-T-CATG-GAAAATGA-AAG--T-A-T-A--GGC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--AAAA--TT-TCAA-CAAAG-AT--------ATGTAATTATACACT---TCCGTATTTTCTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAATATGATGATAGTCTACCTAAATTGGATATCTAAAATGTTTTTACAGG--GGTAATTTTGTTGGAATGAATTGGCGTGTCCTCGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTCCGCCGCGTGTTACTTTTTTAAAACGTAAACACCATGGGACATTAAAGACAAAACAATGCCGTTATTNTATTATTTATTAGAAATAATATTCATGATTATTGTGATTCCANACTTTTCTTAAGAACNTATGTAANTANATTGAATCAATTTACAGTTTTGTATAATCAGTAAGCATACATTAAAGTCGCGTCTTTTGATTTAAGTAAACACGAA-GGACAATANAGGGTAACATGAAGTACAAAAAGTGTACATT-AATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGAGCGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTNGCAATATGGTTGATCGATATT-CAAAAAGTC---TTTAAAAAAAAA-GAATTTTGCAGCTTTTGG-----TAACAGCAACGGACTGTAAT-------GGTAACATTAAGGACA--------------------TTTGGAGTTTT-GTTTTTTTTTTN-AATCTAGAT-GCTCTATATTTAATCTA---TGTAG-TTTTTTTG-GTAGTTTTTTC-TG--A-AAATCTAAATGCTCT--ATATATA-ATCTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-A-TAAGTATAGAATTAA-AAAAAA--ACNAT---CCGGAANCATTAAAAAGGATTAGT-CCTTC-C-TGTTACAGCTTTGTCTCTGC-TGTTAC-AG------TG-T-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCATT-ATTGATCA-CTAATGAT-CTCGA----CTT-TTGTTAAATAT----ACT-GCAAATATT---ACTATTTTTCAA-CAT-AGTTGTGA-A-CCATGT-CATT----GT-GTT-ATGTCTTTGTATNTTNAA-AATA-TAGAACAATGTC--ATGT--TCAA---TTTTGC-AAATTT-TGAG-AGAAG--AGTT-----AACTTAGG-------ACGANAA--AAA---GGTCA---TGTAT-T----TAT-----G-TTT---ACA--ACA--TAAGAGCC-TT--TGTAAAA---CGCATA-T-ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TGAAATGAA-----ATATAT----ATCTTCTTTGAT-ATA---AA------TA---AT---------A-TTCAATT-TTATTTAAAG--TAACACCAGGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAA-C--------CTT--GAT-A----T--CTA-CGA-AA-TGG-AACA--ATTTG-TTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCAGTAT--TTAGT-------TAG-ATAA-TCAA-AA--T--AAGATG-AAAAAATTAC--A--ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCC--G-A-AATAA---AGACA---TTTT--TTGAAA---ATGACC
Reference ( family-3707 ) : ATGTTGTG----GT-CA-T-CGCATA--T-TATT-TAT-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT---TAAA-T--G---A-TTT-GTTG-----AA-TGTG--ATATTTCAT-TT-ACTAACCTTGA-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-AAGA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATA---T-TG-CATGTCCC---AAATGTT--A--TTTTCAATAC-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAA--TA-A---TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-ATAAAA-TG-TTAC--TT-----T---TT-CA--GGTAA-TCT-------TAATCC-TTGT-A----------CTT------G-AAA--ATATGTCCTTGCGTNTT-------TACC-GAAAAAGAAAAACCTGTGTAATGAATCAATATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTAT-T-CATG-GAAAATGA-AAG--T-A-T-A--GGC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--AAAA--TT-TCAA-CAAAG-AT--------ATGTAATTATACACT---TCCGTATTTTCTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAATATGATGATAGTCTACCTAAATTGGATATCTAAAATGTTTTTACAGG--GGTAATTTTGTTGGAATGAATTGGCGTGTCCTCGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTCCGCCGCGTGTTACTTTTTTAAAACGTAAACACCATGGGACATTAAAGACAAAACAATGCCGTTATTNTATTATTTATTAGAAATAATATTCATGATTATTGTGATTCCANACTTTTCTTAAGAACNTATGTAANTANATTGAATCAATTTACAGTTTTGTATAATCAGTAAGCATACATTAAAGTCGCGTCTTTTGATTTAAGTAAACACGAA-GGACAATANAGGGTAACATGAAGTACAAAAAGTGTACATT-AATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGAGCGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTNGCAATATGGTTGATCGATATC-CAAAAAGTC---TTTAAAAAAAAA-GAATCTTGCAGCTTTTGG-----TAACAGCAACGGACTGTAAT-------GGTAACATTAAGGACA--------------------TTTGGAGTTTT-GTTTTTTTTTTN-AATCTAGAT-GCTCTATATTTAATCTA---TGTAG-TTTTTTTG-GTAGTTTTTTC-TG--A-AAATCTAAATGCTCT--ATATATA-ATCTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-A-TAAGTATAGAATTAA-AAAAAA--ACNAT---CCGGAANCATTAAAAAGGATTAGT-CCTTC-C-TGTTACAGCTTTGTCTCTGC-TGTTAC-AG------TG-T-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCATT-ATTGATCA-CTAATGAT-CTCGA----CTT-TTGTTAAATAT----ACT-GCAAATATT---ACTATTTTTCAA-CAT-AGTTGTGA-A-CCATGT-CATT----GT-GTT-ATGTCTTTGTATNTTNAA-AATA-TAGAACAATGTC--ATGT--TCAA---TTTTGC-AAATTT-TGAG-AGAAG--AGTT-----AACTTAGG-------ACGANAA--AAA---GGTCA---TGTAT-T----TAT-----G-TTT---ACA--ACA--TAAGAGCC-TT--TGTAAAA---CGCATA-T-ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TGAAATGAA-----ATATAT----ATCTTCTTTGAT-ATA---AA------TA---AT---------A-TTCAATT-TTATTTAAAG--TAACACCAGGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAA-C--------CTT--GAT-A----T--CTA-CGA-AA-TGG-AACA--ATTTG-TTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCAGTAT--TTAGT-------TAG-ATAA-TCAA-AA--T--AAGATG-AAAAAATTAC--A--ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCC--G-A-AATAA---AGACA---TTTT--TTGAAA---ATGACC
gi|1 : ATGTTGTG----GT-CA-T-CGCAT---T-TATT-TAA-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT----AAA-T--G---A-TTG-GTTG-----AA-TGTG--ATATTTCAT-TT-AGTAACCTTGA-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-AAGG-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-TA--TT--TGG-TCAAATATA---T--G-CATGTCCC---AAATGTT--A--TTTTCAATAC-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAAA-TA-A---TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---ACA------T-------TG-TCT-ATAAT--TG-TTAT--TT-----T---TTTCA--GGTAA-TC---------AATC-----------------------------------TATG---------CTT-------TACA-AAAAAATAAAACACTGTGTA-TGAATCAATATA-TCC-CTTTGCGCACCTCATATCTGCACGTCATCCTGAATAC-TTATGT-CATG-AGAAAT-A-AAG--TGA-T-A--GGCC---GAGGG--AAAGTTA--CTGAAAGGG-TGGATAG----AA---A--AGAAATTT-TCAAACAAAGGAT--------ATTTAATTATACACT---TCCGTATTTTCTGATGTTGTC-CTTAATGT-TACCATCGAAATAAACTATAACAATATGATGATAGTCTACCTAAATTGGATATCT-AAATG-TTTTACAGAGCGGTAATTTTGTTGGAATGAATTGGCGTGTCCTTGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTCCGC--CGTGTTACTTTTTTAAAACGT-AACACCATGGGACATTAAAGACAAAACAATGCCGTTATTTTATTATTTATTAGAAATAA-ATTCATGATTATTGTGATTCCATAC-TTTCTTAAGAACTTATATAACTAGATTGAATCAATTTACAGTTTTGTATAATCAGTAAGCATACATTAAAGTCACGTCTTTTGATTTAAGTAAACACGAACGGACAATACAGGGT-ACATGAAGTAC--AAAGTGTACATT-AATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGA-CGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTTGCAATATGGTTGATCGATATT-C-AAAAGTC---TTTTAAAAAAGA--AATTTTGCAGCTTTTGG-----TAACAG-AACGG-CTGTAAT-------GGTAACATTAAGGACA--------------------TTTGGAGTTTT-GGTTTTTTTTAT-AATCTAGAT-GCTCTATTTATAATCTA---TGTAG-TTTTTTTT-GTAGTTTTTTCTTGTTA-AAATC---------------TATA-ATCTATGTG-TG-CTATAAA---AAAT-AT-TATTA--TCAA-TAAGTATAGAATTAA-ATAAAA--ACAATCAACCGGAAACATTAAAAAAGATTAGT-CCTTC-C-TATTACAG-TTTGTCTCTGC-TGTTAC-AG------TGCT-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCCTTAATTGATC--CTTATGA--CTCGA----CTT-TTGTTAAATATACTAACT-GCAA--ATT---ACTA-TTTTCAA-CAT-AGTTGTGA-ATCCATGT-CATT----GT-GTT-ATGTCTTTGTATTTCAAA-AATA-TAGAACAATGTC--ATGT--TC-A---TTTTGC-AAA-TT-TGA--AGAAG--AGTT-----AACTTAGA-------A-GAAAA--AAA---G--TA---TGTA--T----TAT-----GTTTT---ACA--ACA--TAA-AGCCTTT--TGTAAAA---CGCATA---ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TGAAATATA-----ATATAT----ATCTTCTTTGAT-ATA---A--------A---AT---------ATTTCAATT-TTA-TTAAAG--TAACACCAGGGACATA--TTTTTCGA-G--CTGT--AGC-ATGTATAACC--------CTT--GA--A----T---TA-C-A-AA-TGG-AACA--ATTTG-TTTTTT-----GCA-T-TTTTGTCGTT-T--ATTGC-GTAT--TTA-T-------TAG-ATAATTCAACAA--T--AAGATGAAAAAAATTAC-----ATATAAG-GTCA-T-CAT-TT-TTTAAGTTT---A----T--TCAT---TCC--G-A-AATAA---AGACAGTTTTTT--CTG-AA---ATGACC
gi|10 : tatatgggtcgatttcaaaaaatgtctaaA-T-GTCTTTATTTTTG-TA--GCGTAA-T-TTA-TGTCCA-TGAA-TGAA------TATAT----ATCTTCTTTGAT-CTA---AAAA----TG---AT---------A-TTCAATT-TTATT--AAG--TACCACC-GGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAA----------CTT--GATAA----T--CTA-CGA-TA-TGG-AACA--ATTTGTTTTTTT-----GCA-T-TTTTGTTGTT-TA-ATTGCAATAT--TTAGT-------TAG-ATAA-TCAA-AA--TA-AAGATG----AAATTA---A--ATATAAGCGTCA-T-CA--TT-TTTG---TT---A----T-cat
gi|11 : aaaaATGTTGTG----GT-CA-T-CGCA-A--T-TATT-TAA-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT----AAA-T--G---A-TTT-GTTG-----AA-TGTG--ATATTTCAT-TT-AGTAACCTTGA-CA-TA-AT--GGA-AA-CACAT----TAC-A-ACGATTG-T-AAGA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATA-----TG-CATGTCCC---AAATGT------TTTTCAATAC-A-T---T
gi|12 : tgggtcgatttcaaaaaatgtctaaATGTTGTG----GC-CAAT-C-CAT---T-TATT-TATCTAAC-CAACTTA-TAGTTG--T-AAAC----GT-TTT----AAA-TTGG---A-TTT-GTTGTCGATAA-TGTG--ATATTTCAT-T---CTAAACCTGA-CA-TA-AT--GGATAAACACAT--------A-ACGATTGCT-AAGAGA-TT-AATA--T-TTTTTA-ACAA---TTCAT-ATG-CCAA--TT--TGG-TCAAATATA---T-TG-C-TGTC
gi|13 : tatatggtcgatttcaaaaaatgtctaaAAG-TC-GAAA-ATATG--C-AGGAA-AAAA--TA-A---TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGTAACAAA------TTTTACTATGTTCT-AT-AAA-TG-TAAA--TT-----TCTATT-CA--GATAA-ATC-------TAATCG-TTGT-A----------CTT------GAAAA--ATATGTCC
gi|14 : TCAATTTACAGTTTTTTATAATCAGTAAGCATACATTAAAGTCGCATCTTTTGATTTAAGTAA-CACGAA-GGACAATAAAGGGTAACATGAAGTGCAAAAAGTGTACATT-AATCGATTTTATCCAA
gi|15 : --------------------TTTGGAGTTTTGGTTTTTTTTTTA-AATCTAAA--GCTCTATATTTAATCTA---TGTAGCTTTTTTTG-GTAGTTTTTTTATG--A-AAATCTAAATGCTCT--ATATATA-ACCTATGT
gi|16 : TTTTTT--------AAATCTAAATGCTCT--ATATATA-ATGTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-ACTAAGTATTGGATTAATAAAAAA--ACCAT---CCGAAAACATTAAAAAG
gi|17 : TAT--TTAGT-------TAG-ATAA-TCAA-AAATC--AAGATG-AAAAAGATAC--A--ATATAAGCGTCATT-CATCTT-TTTG---TCGGGA----TAATC-TA--TAC--GAA-AATAA---AGACA---TTTT--TTGAAA---
gi|18 : CTATACCAATATGATGATAGTCTACCTAAACTGGATATCTAAAATGTTTTTACA-G--GGTAATTTTATTGAAATGAATTGGCGTGTCCTCGACAGACGCCAC
gi|19 : CTAACCTTGA-CA-TG-AT--GGA-AAACACATTATGTAC-A-ACGATTG-T-AAGA-A-CT-AATA--T-TTT--
gi|2 : ATGTTGTG----GC-CA-TGCGCATAAATATATT-TAT-TAGC-TAACT-A-TATTT-----AAAC----GT-TTT---TAAA-T--G---AATTT-GTTG-----GA-TGTG--ATATTTCAT-TT-ACTAACCTT-A-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-A-GA-A-TT-AATA--T-TTT--G-ACAA---TTAAT-ATG-C-AA--TT--TGG-TCAAATATA---T-TG-CATGTCCC---AAATGTT--A--TTTTCAATAA-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AGAA--TA-A---TA-TTTCAT-T-A--TGTAAAAC---A-TTATTTGAAAAG-AT-CTG-AAAT--AAAA---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-ATAAA--TG-TTAC--AT-----T---TT-CA--GGTAA-TCT-------TAATC--TTG--A----------CTT------G-AAA--ATATGTCCTT-CGTGTT-------TACC-CAAAAAGAAAT-TCTGTGTAATGAATCA-TATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTAT-TTCATG-GGAAATGA-AAG--T-AGT-A--GG-----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--AAAA--TT-TTAA-CAAAG-AT--------ATG-AATTATACACT---TCCGTATTT-CTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAGTATGATGATAGTCTACCTAAATTGGA-ATCTAA--TGTTTTTACAGG--GGTAATTTTGTTGGAATGAATTG-CGTGTCCTAGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTC-GCCGCGTGTTACTTTTT-AAAACGTAAACACC-TGG-ACATTAAAGACAAA-CAATGCCGTTATTGTATTATTTAT-AGAA-TAATATTCATGATTATT-TGAT-CCAAACTTTTCTTAAGA-CGTATGTAAATATATTGAATCAATT-ACAGTGTTGTATAATCAGTA-GCA-ATATTAA-GTCACGTCTTTTGATTTAAGTATACACGAAAGGACAATAGAGG-TAACATGAAGTACAAAAAGTGTACATTTAATCGATTTTATCCAACTGAATATTTCAATATTTT-CAATACAGATGGAGCGTAATT-GATATAATTGTTGCAAATAGTTATAAATA---ATTAACAATATAGTTGATCGATATT--AAAAAGTC---TTTAAAAAAAAA-GAAATTTGCAGCTTTTGG-----TAACAGCA-CGGACTGTAAT-------GGTA-CATTAAGGACA--------------------TTTGGATTTTT-TTTTTTTTTTTA-AATTTAGAT-GCTCTATATTTAATCTA---TGTAG-GTTCTTTG-GTAGATTTTTC-----A-AAATCTAAATGCTCC--ATATATA-ATTTATGTG-TG-CTAT-AA---AAAT-AT-TATCA--TC-A-TAAGTATAGAATTAA-AAAAAA--ATAAC---CCGGAACAATTAAAAAG-ATTAGT-CCTTC-C-TGTTACAGTTTTGTCTCTGC-TGTTAC-AG------TG-T-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCATT-ATTGATCA-CTAATGAT-CTCGA----CTT-TTGTTAAATAT----ACT-GCAGATATT---ACTATTTTTCAACCAT-AGTTGTGA-A-CCATGT-CATT----GT-GTT-ATGTCTTTGTATATTCAA-AATA-TAGAACAATGTC--ATGT--TCAA----TTTGC-AAATTT-TGA--AGAAG--AGTT-----AACTTA-G-------ACGAAAA--AAA---AGTCA---TATAT-T----TAT-----G-TTT---ACA--ACA--TAA-AGCC-TT--TGTAGAA---CGCATA---ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TAAAATG-A-----TTATAT----ATCTTCTTTTAT-ATA---AA------TA---AT---------A-TTCAATT-TTATTTAAAG--TAACACCAGGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAA-C--------CTT--GAT-A----T--CTA-CGA-AA-TGG-AACA--ATTT--TTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCAGTAT--TTAGT-------TAG-ATAA-TCAA-AA--T--AAGATG-AAAAAATTAC--A--ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCC--G-G-AAT-A---AGACA---ATTT--TGGAAA---AGGACC
gi|20 : T-TTTAG--TT---A----T-ATCATA--TCC--G-A-AATAA---AGATA---TTTT--TTGAAA---ATGACC
gi|3 : GATATCACAAAAAGTCCTGTTTAAAGAAAAACGTTTCTGAAAGTTTTTGGGTCCATAA--GCAACAGACT--AATTATTCCAGGTAACATAACGGACAGTTAGGATTTTTCGGTGTTTCTTGGGGTTTT-ATTTTTTTTTTTTAATCTAAATCGCTCTATATTTA-TCTACCTTGTAG-TTTTTTGGCGT-GTTTTATC-TG--TTAGATCTAAATGCTCTCCATATATATAT-TATGTGGTGTCTAT-AACAAAAATCATGTATTAAATC-A-TAAGT-CA-AATCAG-GAAAAATCACCA-----CGAAATCATTAAAAGGAATTAGTTCCTTCACATGTTAC--CCCTGTCTTAGCATGTTCCTAGATTCTCTG-TTTGAATTGCTGGTCCCTCCTGTTACTCGTCAAGAGTAT--AAAAATA---AGATATCAA--AT--ATCAGCTAATAGCACTCGAGGCTCTCGTTGTTAAA-AT----GCTTGCAAATATTTGAA--ATTTTTCAA-CATTAGTTATGA-A-CCATAC-CATT----GT-GTTTATGTCTTTGCATTTTGAA-AATA-TAGAA-AATGTT--AAGT--TCAAA--TTTTGC-AAATTT-TGAA-AGAAG--AGTT-----AAACTAGAT------ACGATGA--AAA---GATCAATATATAT-TGTACTAT-----G-T------CA--CCA--TAAGAGCC-TT--T-TGAAA---CGCATAAC-ATTTCTATAATTG-TATGGCGTAA-TAT-AATTTC-AATGAAATGAATATTAATAGAT----ATCTTCTTTGAT-ATA---AAATAATATA---ATTTTTTTATTA-TTCAGTT-TTATT-AAAG--TAACACCAGGGACACA--CTTTCC-A-G--CTGT--AGC-ATGTATAATC--------CTTCAGAT-A----T--CTA-CGA-AA-TGG-AACA--ATTTG-TTTTTT-----GCATT-TT-TGTTGTT-T--ATTGCAGTAT--TTAAT-------TAG-ATAA-TCAA-AT--TA-AAAATG-AAAAAATTAC--A--A-ATAAGCGTCA-T-CAT-TT-TTca
gi|4 : aatgcaaaaatagattagctcaTTGTG----AT-CA-TTCGTATA--T-TATTATAT-------AA-T-A-CATT--------AC----GT-TTT---TAAA-T--G---A-TTTGGTTG-----AA-TGTGA-ATATTCCATAAA-ACTAACCTTGA-CACTGCAT--GG--ATACACAT----TAC-ATACGATTG-T-AAGA-AGCT-AATA--T-TTT--GAACAAATTTCCATCATG-CGGA--TT--TTG-TTCAATATA---C-TGCCATGTCCC---AAAT-TT--ATTTTTTCATTACTA-T---CGAGTTC-GAAA-ATATG--CTAAGAA-AAAA--AA-AACGTC-TTTCAT-TCAATTGTAAAGC-ATA-TT-CTTTAAAAG-A
gi|4 : tatatggcgtcgatttcaaaatgtctaaatG-GAAT--AAAGCG-GA--T---GG--C-TGACAG-C-T---------TCAA-CA-----AA-TTC--------TGT---AAT------T-------GG-TCT-TTAAA--TG-TT-C--TTCTTTCT---TT-CA--CATAA-TCT--------AATCG-T-GT-AA---------CTT------G-AAACAATATGTCCTTGCATTGT-------TACA-GAAAAAGAAAAATCGTTGTATTGA-TCAATATAATCCTCTTTGTGCACCTCATATCTG-ACGTCATC-TGAATA-ATTAT-T-CATG-GAAATTGACAAG--T-A-T-ACTGCC----GAGGGACAAAGATCACCTGAA--GGATG-ATAGAGAAAG---A--AAAA--TTCTCAA-CAAAG-AT--------ATG-A--TATAAACTACATTCGTATATTCTGATGTTGTCTTTTAATGTATACCTATaatgtctagtttaaaagttactagcccttttgtgcaactgggaataaagcggatggctgacagcttcaacaaattctgtaattggtctttaaatgttcttctttctttcacataatctaatcgtgtaacttgaaacaatatgtccttgcattgttacagaaaaagaaaaatcgttgtattgatcaatataatcctctttgtgcacctcatatctgacgtcatctgaataattattcatggaaattgacaagtatactgccgagggacaaagatcacctgaaggatgatagagaaagaaaaattctcaacaaagatatgatataaactacattcgtatattctgatgttgtcttttaatgtatacctat
gi|5 : tatatggcgtcgatttcaaaatgtctaaatttgtgatcattcgtatattattatataatacattacgtttttaaatgatttggttgaatgtgaatattccataaaactaaccttgacactgcatggatacacattacatacgattgtaagaagctaatattttgaacaaatttccatcatgcggattttgttcaatatactgccatgtcccaaatttattttttcattactatcgagttcgaaaatatgctaagaaaaaaaaaacgtctttcattcaattgtaaagcatattctttaaaagaaatgtctagtttaaaagttactagcccttttgtgcaactgATGTTGTGCCCCGT-CA-T-CGCAT---T-TATT-TATATACCCTAACT-A-TATTTCCTT-AAACACCCGT-TTTAGCTAAACT--GCCCA-TTTTGTTG-----AA-TGTACTATATTTCAT-TTTACTCACCTTGA-C--TA-ATTGGAA-AAACAC-T----TAC-A-ACGATTG-CCAAGA-A-TTGAATACCT-TTTAAG-ACAA---TTC-T-ATGGC-GAATTT--TGG-TCAAATAAA---TATG-CATGTTCTCAAAAATGGT--A--ATTT--ATAC-A-TACATAAG-TCAGAAA-ATATGAAC-AAGAA-AAAA--AA-A---TAATTTCAT-T-AA-TGTAAAACTATA-TT-TTTGAAAAG-ATTCTG-AAATCTAAAGCCCGG--TCAAG---TGTGACAGGCAT---------TCAAACA-----AAATT---------TGT---AAA------T-------TG-TCT-ATAAAA-TGATTAC--TT-----T---TTGCA--AGTAAATCT-------AAATCCGTTGTTA----------CTT------G-AAA---TATGTCCTTTCGTG-T-------TACCAAAAAAAGAATAACCTGTGTAATGAATCAA-AT--TCC-CTTTG-GCACCTCATATCTG-ACGTCATC-TGAATA-ATTAT-T-CATGCGAAAATGA-AAGGTT-A-TAA--GGCGCAAGAGGG--AAAG-T---ATGAA--GG-TG-ATAG----AAAAGA--AAAA--TT-TCAA-C-AAG-AT---------TGTAATTATACACT---TCCGTATTTTCTCATGT
gi|6 : gaatcgatttcaaaaatgtcctaaTTGTGA-A-GC-TGTTCATTCGTGGTTGTT-GTTTCTATGTATATTCAAGAATAGTAGAACAATGTCCGATGTATCCAAGCTTTTTGCTAGATCTGTGAG-AGAAG--AGTTGGTGCACCTTAGGGTTATTTAC-AGAACCAAACTTAGTCA---GGTATAT----TATCGTTGG-TTTGGGACATTACA--TAAGAGCC-TTGTTGAAAAAATTCGCATA-TTATTTTTATAATTGCTA--GCGTAAAT-T-A-TGTCGA-TGAAATGAA-----AGATATGATGATCTTCTTTGATTATATGGAA------CATAAAT---------A-TTCAATTGCTATT--AAGCTTAACACCAGGGACA-AGTTTTTTC-ATGCCCTATTGAGCTATGCATAA-TATGGGTTACTT--G-T-AAGGGT--CTATCAATAACTGGTAACACCATTTG-TTTTTTTTGGGGCATTATTGTGTTGTTGTGAATTTTGGCATTGTTGGTTGATTCCTAGAATAA-TCAA-AT--A--AAGATG-AAGAAATTACTTT--ATAAAAGCGTCA-TCCAT-TTCTTTA---TT---A----T-ATCATACGTTC--G-ATAATAACTGAG-CA---TTTTTGTTGAAACCCATGACC
gi|7 : TCCTTACCCTTACTTGTCAGTTATATT----AATTTTTA--TGTGATT-ATTGATCA-CTAACGAT-CTTGA-----TA-TTGT-ACATGT----ATT-GCAAAT--T---ATAATTCTTTAA-CAT-AGTTACAATA-TTACAT-CAGT----GT-CTA-ATATCTTTGGATGTCTTA-AATG-GAGAACAATGTA--AAAC--TTAA---TTTTGC-AATATA-TGAGTAGAAGCTAGGT-----A---TAT--------ATGACAA--AAA---GCATA---TGCAC-T------------G-TTT---GTA--GCAAATAATTTCT-TT--CCTATTC---TTCA-A-T-ATTTCTATTATT---A--GCATAT-T-T-T-TGCC-A-AAAAA-GGA-----GTAAAT----ATTTTGTTTGATCAAA---AA------TT---AT---------A-TCTAATT-TAGTATGA----TGACACCAAAGACACA--TGTTTC-A-G--CTGT--AAT-ATGTA-AA-C--------TCT--TTT-A----TTGCTA-TTA-AA-TGG-GTCA--ATTCA-TTTATT-----GCATA-TTTGATT-TT-C--GTCGCAGT-T--TGAAT-------TAG-TTCG-TCAA-AA--TTAAACATG-CTAAAAGTCC--AATATATAAGACTTA-T-GAT-TT-TGTT---TT---ACCTCT-ATCATA--TTCTTG------AG---AAACA---TATT--TTGGAA---ATGACca
gi|8 : TA-AAAT--AACGA--GG--T---GATAT-TGACAG-CATCCAAGAGTCTCAA-CATTGTCAA-TTAAATAAAAATGT---GAAATTAGTT-------TG-TCTTATAAAACTG-TTACATTT-----C---TT-CATAGGTAA-TCTGTTTCTCTAATCC-TTGT-ATGCCTAATTACTTCGATAAG-AGAT-ATGTGTCCTTGCGTATGGGGAGGATACC--AAAAAGAAAA-CCTGTGTAATGAATCAATATA-GCC-CTTTGCGCATCTCATATCTG-ACGTCATC-TGAATACATTAT-T-CATG-GAAAATGA-AAG--T-A-T-A--GGC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---AAGAAAA--TT-TCAA-CAAAG-ATATGTACAAATGTAATTATACACT---TCCATATTTTCCGATGTTGTC-CTCAATGT-TACCAATGAAATAAACTATACCAATAtcatata
gi|9 : ctatgtataagatcatgatgaaatgtgattaTTCTG----GTGCA-T-CGTATC--TCTATT-TAT-TAACCTAATT-AATACTT---TGAAAC----ACGTTT---TAAA-T--G---A-TTT-GTTG-----AAATGTG--ATATTCCAT-TA-ACTA-CCTTGAACA-TG-AT--GGA-AAACACAT----TACAA-ACGATTG-T-AAGA-A----ACTA--TATTT--G-AGAA---TTCAT-ATG-C-GA--TTCGTGGATC-AATATACCGT-GG-CATGTCCA---TAATTTTAAA--TTTTCATTAC-ACT---TAAC-TT-GAAAGATATG--C-AAGAATAAAATTTATA---TC-TTTCATCC-A--TGTAACACTATACTT-CTTGAAAAGAAT-CTGAAAAT--AAAC---GGAAT---G---C-TGA
Alignments
lowQualScore : 1111 1 22222 1 1 22222 1111 2222 111 1 11111 11 1111 1111 11 111 1 111111 111 11111 111 111111111 11 222 111 11111 222222222 11111 333333333 111 33333333333333 22 222222222 1 333333333 66666666666666666666666666666666666 1 2222222222 11 11 11 11 11 2222 11 222 11 111111111111 11 222222222 1 111 1 1 2222 1 11 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 222 222 222 1 1 33333 4444444 88888888888888888888 11 11 11 111 1 1 44444444 11 1 1 1 111 1 1 11 111 1 11 2222 1 1 111 111 1 1 888888888888888888888 11 222222 11 11 11 22222222 2222 1 111111 1 1 1111 11 11 2222 22 11 22222 444444444 11 22222222222 333333333333333 111 11 11 1 11 111 222 1 222222 1111 1 444444444444444444444444444 11 3333333333 11111111111111 11111 1111 1111111 22222 11111 111 11111111 111 111 111 111
lowQualScore : 2222 5 5 1 55555 5 1 1 5 5 22222 2222 5 2222 5 77 000 5 1 44444 5 33 1111 5 5 5 66 5 0000 5 5 5 5 5 55 5 66 5 33 5 000 5 5 1 77 77 5 1 777777 5 111 2 33333 6 6 111 6 6 6 99 6 6 555555555 6 666 55 7 6 6 6 8 5 77 333 77 000 66666 6 666666666 6 66666 6 333333333 111 11111111111111 6 6 22 6 99 111111111 3 99 6 000000000 22222222222222222222222222222222222 0 8888888888 99 66 6 0 11 88 8 3 8 8 00 8 8 8 8 11 8 8 8 11 5555 11 6 222 11 8 8 888888888888 11 8 8 0 8 999999999 0 0 444 0 0 0 7 7 7 7 0000 6 3 5 77 5 5 5 5 5 1 5 5 5 5 5 1 5 5 1 1 1 7 7 7 7 0 7 6 1 6 7 7 3 5 5 5 111 1 777 333 5 3 33333 6 6 7 7 6 3333333 7 11111111111111111111 00 11 33 3 777 0 0 3 44444444 0 11 8 8 0 0 0 777 0 0 33 111 3 2 0 33 1 4444 1 2 3 666 777 3 3 777777777777777777777 1 22 222222 33 3 33 77 66666666 3 3 1111 0 333 888888 3 0 0 8 8 0 8 7777 8 8 1 1 8 8 11 1 11 0 2222 8 6 8 11 11 00000 5 555555555 3 1 11 11111111111 222222222222222 8 0 444 11 11 5 8 11 5 444 0 333 6 99 6 6 888 3 6 6 222222 4444 3 555555555555555555555555555 6 6 77 99 4 99 6 6 99 99 6 8888888888 88888888888888 6 5 6 6 6 99 77 66666 999 3 6666 1 77 1 8888888 5 5 5 44444 77 77777 0 5 5 5 5 555 33333333 5 99 99 555 111 111 99 1 111
lowQualScore : .... . . . ..... . . . . . ..... .... . .... . .. ... . . ..... . .. .... . . . .. . .... . . . . . .. . .. . .. . ... . . . .. .. . . ...... . ... . ..... . . ... . . . .. . . ......... . ... .. . . . . . . .. ... .. ... ..... . ......... . ..... . ......... ... .............. . . .. . .. ......... . .. . ......... ................................... . .......... .. .. . . .. .. . . . . .. . . . . .. . . . .. .... .. . ... .. . . ............ .. . . . . ......... . . ... . . . . . . . .... . . . .. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . ... ... . . ..... . . . . . ....... . .................... .. .. .. . ... . . . ........ . .. . . . . . ... . . .. ... . . . .. . .... . . . ... ... . . ..................... . .. ...... .. . .. .. ........ . . .... . ... ...... . . . . . . . .... . . . . . . .. . .. . .... . . . .. .. ..... . ......... . . .. ........... ............... . . ... .. .. . . .. . ... . ... . .. . . ... . . . ...... .... . ........................... . . .. .. . .. . . .. .. . .......... .............. . . . . . .. .. ..... ... . .... . .. . ....... . . . ..... .. ..... . . . . . ... ........ . .. .. ... ... ... .. . ...
lowQualScore : 1111 7 7 4 77777 7 4 4 7 7 99999 1111 7 0000 7 99 000 7 4 33333 7 66 6666 0 0 0 99 0 6666 0 0 0 0 0 99 0 99 0 88 7 000 7 7 4 99 99 7 4 333333 7 777 5 33333 7 7 777 7 7 7 22 7 7 888888888 7 888 88 3 7 7 7 0 7 99 666 99 000 77777 7 777777777 7 77777 7 333333333 777 88888888888888 7 7 22 7 22 888888888 3 22 7 888888888 22222222222222222222222222222222222 0 4444444444 44 88 0 8 66 88 0 2 0 0 88 0 0 0 0 00 0 0 0 00 0000 00 0 000 00 0 0 000000000000 00 0 0 8 0 888888888 6 8 000 8 0 0 3 3 3 3 3333 7 7 0 55 5 5 5 0 5 0 5 5 5 0 5 0 5 5 0 0 0 3 3 3 3 7 3 7 0 7 3 3 3 5 0 0 555 0 333 333 0 3 33333 7 7 3 3 7 3333333 3 22222222222222222222 22 00 22 2 555 0 0 2 88888888 8 00 0 2 0 0 0 555 0 0 88 000 2 5 0 88 0 5555 0 0 3 777 777 3 3 000000000000000000000 2 00 222222 22 2 22 00 00000000 2 2 2222 0 555 555555 2 0 0 0 0 8 0 0000 0 0 0 0 0 0 00 4 00 8 8888 0 0 0 22 00 00000 6 444444444 2 0 00 00000000000 222222222222222 0 8 000 00 00 0 0 00 0 000 8 222 7 22 7 7 777 3 7 0 777777 2222 3 888888888888888888888888888 7 7 00 22 2 22 7 7 22 22 7 5555555555 00000000000000 7 2 7 7 7 22 77 77777 333 2 0000 7 99 7 6666666 7 7 7 00000 11 44444 7 7 7 7 0 777 11111111 7 22 22 000 777 777 22 7 777
consensus : ATGTTGTG----GT-CA-T-CGCATA--T-TATT-TAT-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT---TAAA-T--G---A-TTT-GTTG-----AA-TGTG--ATATTTCAT-TT-ACTAACCTTGA-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-AAGA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATA---T-TG-CATGTCCC---AAATGTT--A--TTTTCAATAC-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAA--TA-A---TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-ATAAAA-TG-TTAC--TT-----T---TT-CA--GGTAA-TCT-------TAATC--TTGT-A----------CTT------G-AAA--ATATGTCCTTGCGTNTT-------TACC-GAAAAAGAAAAACCTGTGTAATGAATCAATATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTAT-T-CATG-GAAAATGA-AAG--T-A-T-A--GGC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--AAAA--TT-TCAA-CAAAG-AT--------ATGTAATTATACACT---TCCGTATTTTCTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAATATGATGATAGTCTACCTAAATTGGATATCTAAAATGTTTTTACAGG--GGTAATTTTGTTGGAATGAATTGGCGTGTCCTCGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTCCGCCGCGTGTTACTTTTTTAAAACGTAAACACCATGGGACATTAAAGACAAAACAATGCCGTTATTNTATTATTTATTAGAAATAATATTCATGATTATTGTGATTCCANACTTTTCTTAAGAACNTATGTAANTANATTGAATCAATTTACAGTTTTGTATAATCAGTAAGCATACATTAAAGTCGCGTCTTTTGATTTAAGTAAACACGAA-GGACAATANAGGGTAACATGAAGTACAAAAAGTGTACATT-AATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGAGCGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTNGCAATATGGTTGATCGATATT-CAAAAAGTC---TTTAAAAAAAAA-AATTTTGCA-GCTTTTGG-----TAACAGCAACGGACTGTAAT-------GGTAACATTAAGGACA--------------------TTTGGAGTTTT-GTTTTTTTTTTN-AATCTAGAT-GCTCTATATTTAATCTA---TGTAG-TTTTTTTG-GTAGTTTTTTC-TG--A-AAATCTAAATGCTCT--ATATATA-ATCTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-A-TAAGTATAGAATTAA-AAAAAA--ACNAT---CCGGAANCATTAAAAAGGATTAGT-CCTTC-C-TGTTACAGCTTTGTCTCTGC-TGTTAC-AG------TG-T-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCATT-ATTGATCA-CTAATGAT-CTCGA----CTT-TTGTTAAATAT----ACT-GCAAATATT---ACTATTTTTCAA-CAT-AGTTGTGA-A-CCATGT-CATT----GT-GTT-ATGTCTTTGTATNTTNAA-AATA-TAGAACAATGTC--ATGT--TCAA---TTTTGC-AAATTT-TGAG-AGAAG--AGTT-----AACTTAGG-------ACGANAA--AAA---GGTCA---TGTAT-T----TAT-----G-TTT---ACA--ACA--TAAGAGCC-TT--TGTAAAA---CGCATA-T-ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TGAAATGAA-----ATATAT----ATCTTCTTTGAT-ATA---AA------TA---AT---------A-TTCAATT-TTATTTAAAG--TAACACCAGGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAA-C--------CTT--GAT-A----T--CTA-CGA-AA-TGG-AACA--ATTTG-TTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCAGTAT--TTAGT-------TAG-ATAA-TCAA-AA--T--AAGATG-AAAAAATTAC--A--ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCC--G-A-AATAA---AGACA---TTTT--TTGAAA---ATGACC
Reference ( family-3707 ) : ATGTTGTG----GT-CA-T-CGCATA--T-TATT-TAT-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT---TAAA-T--G---A-TTT-GTTG-----AA-TGTG--ATATTTCAT-TT-ACTAACCTTGA-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-AAGA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATA---T-TG-CATGTCCC---AAATGTT--A--TTTTCAATAC-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAA--TA-A---TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-ATAAAA-TG-TTAC--TT-----T---TT-CA--GGTAA-TCT-------TAATC--TTGT-A----------CTT------G-AAA--ATATGTCCTTGCGTNTT-------TACC-GAAAAAGAAAAACCTGTGTAATGAATCAATATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTAT-T-CATG-GAAAATGA-AAG--T-A-T-A--GGC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--AAAA--TT-TCAA-CAAAG-AT--------ATGTAATTATACACT---TCCGTATTTTCTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAATATGATGATAGTCTACCTAAATTGGATATCTAAAATGTTTTTACAGG--GGTAATTTTGTTGGAATGAATTGGCGTGTCCTCGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTCCGCCGCGTGTTACTTTTTTAAAACGTAAACACCATGGGACATTAAAGACAAAACAATGCCGTTATTNTATTATTTATTAGAAATAATATTCATGATTATTGTGATTCCANACTTTTCTTAAGAACNTATGTAANTANATTGAATCAATTTACAGTTTTGTATAATCAGTAAGCATACATTAAAGTCGCGTCTTTTGATTTAAGTAAACACGAA-GGACAATANAGGGTAACATGAAGTACAAAAAGTGTACATT-AATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGAGCGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTNGCAATATGGTTGATCGATATT-CAAAAAGTC---TTTAAAAAAAAAGAATTTTGCA-GCTTTTGG-----TAACAGCAACGGACTGTAAT-------GGTAACATTAAGGACA--------------------TTTGGAGTTTT-GTTTTTTTTTTN-AATCTAGAT-GCTCTATATTTAATCTA---TGTAG-TTTTTTTG-GTAGTTTTTTC-TG--A-AAATCTAAATGCTCT--ATATATA-ATCTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-A-TAAGTATAGAATTAA-AAAAAA--ACNAT---CCGGAANCATTAAAAAGGATTAGT-CCTTC-C-TGTTACAGCTTTGTCTCTGC-TGTTAC-AG------TG-T-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCATT-ATTGATCA-CTAATGAT-CTCGA----CTT-TTGTTAAATAT----ACT-GCAAATATT---ACTATTTTTCAA-CAT-AGTTGTGA-A-CCATGT-CATT----GT-GTT-ATGTCTTTGTATNTTNAA-AATA-TAGAACAATGTC--ATGT--TCAA---TTTTGC-AAATTT-TGAG-AGAAG--AGTT-----AACTTAGG-------ACGANAA--AAA---GGTCA---TGTAT-T----TAT-----G-TTT---ACA--ACA--TAAGAGCC-TT--TGTAAAA---CGCATA-T-ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TGAAATGAA-----ATATAT----ATCTTCTTTGAT-ATA---AA------TA---AT---------A-TTCAATT-TTATTTAAAG--TAACACCAGGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAA-C--------CTT--GAT-A----T--CTA-CGA-AA-TGG-AACA--ATTTG-TTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCAGTAT--TTAGT-------TAG-ATAA-TCAA-AA--T--AAGATG-AAAAAATTAC--A--ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCC--G-A-AATAA---AGACA---TTTT--TTGAAA---ATGACC
gi|1 : ATGTTGTG----GT-CA-T-CGCAT---T-TATT-TAA-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT----AAA-T--G---A-TTG-GTTG-----AA-TGTG--ATATTTCAT-TT-AGTAACCTTGA-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-AAGG-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-TA--TT--TGG-TCAAATATA---T--G-CATGTCCC---AAATGTT--A--TTTTCAATAC-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAAA-TA-A---TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---ACA------T-------TG-TCT-ATAAT--TG-TTAT--TT-----T---TTTCA--GGTAA-TC---------AATC--T---------------------------------ATG---------CTT-------TACA-AAAAAATAAAACACTGTGTA-TGAATCAATATA-TCC-CTTTGCGCACCTCATATCTGCACGTCATCCTGAATAC-TTATGT-CATG-AGAAAT-A-AAG--TGA-T-A--GGCC---GAGGG--AAAGTTA--CTGAAAGGG-TGGATAG----AA---A--AGAAATTT-TCAAACAAAGGAT--------ATTTAATTATACACT---TCCGTATTTTCTGATGTTGTC-CTTAATGT-TACCATCGAAATAAACTATAACAATATGATGATAGTCTACCTAAATTGGATATCT-AAATG-TTTTACAGAGCGGTAATTTTGTTGGAATGAATTGGCGTGTCCTTGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTCCGC--CGTGTTACTTTTTTAAAACGT-AACACCATGGGACATTAAAGACAAAACAATGCCGTTATTTTATTATTTATTAGAAATAA-ATTCATGATTATTGTGATTCCATAC-TTTCTTAAGAACTTATATAACTAGATTGAATCAATTTACAGTTTTGTATAATCAGTAAGCATACATTAAAGTCACGTCTTTTGATTTAAGTAAACACGAACGGACAATACAGGGT-ACATGAAGTAC--AAAGTGTACATT-AATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGA-CGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTTGCAATATGGTTGATCGATATT-C-AAAAGTC---TTTTAAAAAAGA-AATTTTGCA-GCTTTTGG-----TAACAG-AACGG-CTGTAAT-------GGTAACATTAAGGACA--------------------TTTGGAGTTTT-GGTTTTTTTTAT-AATCTAGAT-GCTCTATTTATAATCTA---TGTAG-TTTTTTTT-GTAGTTTTTTCTTGTTA-AAATC---------------TATA-ATCTATGTG-TG-CTATAAA---AAAT-AT-TATTA--TCAA-TAAGTATAGAATTAA-ATAAAA--ACAATCAACCGGAAACATTAAAAAAGATTAGT-CCTTC-C-TATTACAG-TTTGTCTCTGC-TGTTAC-AG------TGCT-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCCTTAATTGATC--CTTATGA--CTCGA----CTT-TTGTTAAATATACTAACT-GCAA--ATT---ACTA-TTTTCAA-CAT-AGTTGTGA-ATCCATGT-CATT----GT-GTT-ATGTCTTTGTATTTCAAA-AATA-TAGAACAATGTC--ATGT--TC-A---TTTTGC-AAA-TT-TGA--AGAAG--AGTT-----AACTTAGA-------A-GAAAA--AAA---G--TA---TGTA--T----TAT-----GTTTT---ACA--ACA--TAA-AGCCTTT--TGTAAAA---CGCATA---ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TGAAATATA-----ATATAT----ATCTTCTTTGAT-ATA---A--------A---AT---------ATTTCAATT-TTA-TTAAAG--TAACACCAGGGACATA--TTTTTCGA-G--CTGT--AGC-ATGTATAACC--------CTT--GA--A----T---TA-C-A-AA-TGG-AACA--ATTTG-TTTTTT-----GCA-T-TTTTGTCGTT-T--ATTGC-GTAT--TTA-T-------TAG-ATAATTCAACAA--T--AAGATGAAAAAAATTAC-----ATATAAG-GTCA-T-CAT-TT-TTTAAGTTT---A----T--TCAT---TCC--G-A-AATAA---AGACAGTTTTTT--CTG-AA---ATGACC
gi|10 : tatatgggtcgatttcaaaaaatgtctaaA-T-GTCTTTATTTTTG-TA--GCGTAA-T-TTA-TGTCCA-TGAA-TGAA------TATAT----ATCTTCTTTGAT-CTA---AAAA----TG---AT---------A-TTCAATT-TTATT--AAG--TACCACC-GGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAA----------CTT--GATAA----T--CTA-CGA-TA-TGG-AACA--ATTTGTTTTTTT-----GCA-T-TTTTGTTGTT-TA-ATTGCAATAT--TTAGT-------TAG-ATAA-TCAA-AA--TA-AAGATG----AAATTA---A--ATATAAGCGTCA-T-CA--TT-TTTG---TT---A----T-cat
gi|11 : aaaaATGTTGTG----GT-CA-T-CGCA-A--T-TATT-TAA-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT----AAA-T--G---A-TTT-GTTG-----AA-TGTG--ATATTTCAT-TT-AGTAACCTTGA-CA-TA-AT--GGA-AA-CACAT----TAC-A-ACGATTG-T-AAGA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATA-----TG-CATGTCCC---AAATGT------TTTTCAATAC-A-T---T
gi|12 : tgggtcgatttcaaaaaatgtctaaATGTTGTG----GC-CAAT-C-CAT---T-TATT-TATCTAAC-CAACTTA-TAGTTG--T-AAAC----GT-TTT----AAA-TTGG---A-TTT-GTTGTCGATAA-TGTG--ATATTTCAT-T---CTAAACCTGA-CA-TA-AT--GGATAAACACAT--------A-ACGATTGCT-AAGAGA-TT-AATA--T-TTTTTA-ACAA---TTCAT-ATG-CCAA--TT--TGG-TCAAATATA---T-TG-C-TGTC
gi|13 : tatatggtcgatttcaaaaaatgtctaaAAG-TC-GAAA-ATATG--C-AGGAA-AAAA--TA-A---TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGTAACAAA------TTTTACTATGTTCT-AT-AAA-TG-TAAA--TT-----TCTATT-CA--GATAA-ATC-------TAATCG-TTGT-A----------CTT------GAAAA--ATATGTCC
gi|14 : TCAATTTACAGTTTTTTATAATCAGTAAGCATACATTAAAGTCGCATCTTTTGATTTAAGTAA-CACGAA-GGACAATAAAGGGTAACATGAAGTGCAAAAAGTGTACATT-AATCGATTTTATCCAA
gi|15 : --------------------TTTGGAGTTTTGGTTTTTTTTTTA-AATCTAAA--GCTCTATATTTAATCTA---TGTAGCTTTTTTTG-GTAGTTTTTTTATG--A-AAATCTAAATGCTCT--ATATATA-ACCTATGT
gi|16 : TTTTTT--------AAATCTAAATGCTCT--ATATATA-ATGTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-ACTAAGTATTGGATTAATAAAAAA--ACCAT---CCGAAAACATTAAAAAG
gi|17 : TAT--TTAGT-------TAG-ATAA-TCAA-AAATC--AAGATG-AAAAAGATAC--A--ATATAAGCGTCATT-CATCTT-TTTG---TCGGGA----TAATC-TA--TAC--GAA-AATAA---AGACA---TTTT--TTGAAA---
gi|18 : CTATACCAATATGATGATAGTCTACCTAAACTGGATATCTAAAATGTTTTTACA-G--GGTAATTTTATTGAAATGAATTGGCGTGTCCTCGACAGACGCCAC
gi|19 : CTAACCTTGA-CA-TG-AT--GGA-AAACACATTATGTAC-A-ACGATTG-T-AAGA-A-CT-AATA--T-TTT--
gi|2 : ATGTTGTG----GC-CA-TGCGCATAAATATATT-TAT-TAGC-TAACT-A-TATTT-----AAAC----GT-TTT---TAAA-T--G---AATTT-GTTG-----GA-TGTG--ATATTTCAT-TT-ACTAACCTT-A-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-A-GA-A-TT-AATA--T-TTT--G-ACAA---TTAAT-ATG-C-AA--TT--TGG-TCAAATATA---T-TG-CATGTCCC---AAATGTT--A--TTTTCAATAA-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AGAA--TA-A---TA-TTTCAT-T-A--TGTAAAAC---A-TTATTTGAAAAG-AT-CTG-AAAT--AAAA---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-ATAAA--TG-TTAC--AT-----T---TT-CA--GGTAA-TCT-------TAATC--TTG--A----------CTT------G-AAA--ATATGTCCTT-CGTGTT-------TACC-CAAAAAGAAAT-TCTGTGTAATGAATCA-TATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTAT-TTCATG-GGAAATGA-AAG--T-AGT-A--GG-----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--AAAA--TT-TTAA-CAAAG-AT--------ATG-AATTATACACT---TCCGTATTT-CTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAGTATGATGATAGTCTACCTAAATTGGA-ATCTAA--TGTTTTTACAGG--GGTAATTTTGTTGGAATGAATTG-CGTGTCCTAGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTC-GCCGCGTGTTACTTTTT-AAAACGTAAACACC-TGG-ACATTAAAGACAAA-CAATGCCGTTATTGTATTATTTAT-AGAA-TAATATTCATGATTATT-TGAT-CCAAACTTTTCTTAAGA-CGTATGTAAATATATTGAATCAATT-ACAGTGTTGTATAATCAGTA-GCA-ATATTAA-GTCACGTCTTTTGATTTAAGTATACACGAAAGGACAATAGAGG-TAACATGAAGTACAAAAAGTGTACATTTAATCGATTTTATCCAACTGAATATTTCAATATTTT-CAATACAGATGGAGCGTAATT-GATATAATTGTTGCAAATAGTTATAAATA---ATTAACAATATAGTTGATCGATATT--AAAAAGTC---TTTAAAAAAAAAGAAATTTGCA-GCTTTTGG-----TAACAGCA-CGGACTGTAAT-------GGTA-CATTAAGGACA--------------------TTTGGATTTTT-TTTTTTTTTTTA-AATTTAGAT-GCTCTATATTTAATCTA---TGTAG-GTTCTTTG-GTAGATTTTTC-----A-AAATCTAAATGCTCC--ATATATA-ATTTATGTG-TG-CTAT-AA---AAAT-AT-TATCA--TC-A-TAAGTATAGAATTAA-AAAAAA--ATAAC---CCGGAACAATTAAAAAG-ATTAGT-CCTTC-C-TGTTACAGTTTTGTCTCTGC-TGTTAC-AG------TG-T-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCATT-ATTGATCA-CTAATGAT-CTCGA----CTT-TTGTTAAATAT----ACT-GCAGATATT---ACTATTTTTCAACCAT-AGTTGTGA-A-CCATGT-CATT----GT-GTT-ATGTCTTTGTATATTCAA-AATA-TAGAACAATGTC--ATGT--TCAA----TTTGC-AAATTT-TGA--AGAAG--AGTT-----AACTTA-G-------ACGAAAA--AAA---AGTCA---TATAT-T----TAT-----G-TTT---ACA--ACA--TAA-AGCC-TT--TGTAGAA---CGCATA---ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TAAAATG-A-----TTATAT----ATCTTCTTTTAT-ATA---AA------TA---AT---------A-TTCAATT-TTATTTAAAG--TAACACCAGGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAA-C--------CTT--GAT-A----T--CTA-CGA-AA-TGG-AACA--ATTT--TTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCAGTAT--TTAGT-------TAG-ATAA-TCAA-AA--T--AAGATG-AAAAAATTAC--A--ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCC--G-G-AAT-A---AGACA---ATTT--TGGAAA---AGGACC
gi|20 : T-TTTAG--TT---A----T-ATCATA--TCC--G-A-AATAA---AGATA---TTTT--TTGAAA---ATGACC
gi|3 : GATATCACAAAAAGTCCTGTTTAAAGAAAAACGTTTCTGAAAGTTTTTGGGTCCATAA--GCAACAGACT--AATTATTCCAGGTAACATAACGGACAGTTAGGATTTTTCGGTGTTTCTTGGGGTTTT-ATTTTTTTTTTTTAATCTAAATCGCTCTATATTTA-TCTACCTTGTAG-TTTTTTGGCGT-GTTTTATC-TG--TTAGATCTAAATGCTCTCCATATATATAT-TATGTGGTGTCTAT-AACAAAAATCATGTATTAAATC-A-TAAGT-CA-AATCAG-GAAAAATCACCA-----CGAAATCATTAAAAGGAATTAGTTCCTTCACATGTTAC--CCCTGTCTTAGCATGTTCCTAGATTCTCTG-TTTGAATTGCTGGTCCCTCCTGTTACTCGTCAAGAGTAT--AAAAATA---AGATATCAA--AT--ATCAGCTAATAGCACTCGAGGCTCTCGTTGTTAAA-AT----GCTTGCAAATATTTGAA--ATTTTTCAA-CATTAGTTATGA-A-CCATAC-CATT----GT-GTTTATGTCTTTGCATTTTGAA-AATA-TAGAA-AATGTT--AAGT--TCAAA--TTTTGC-AAATTT-TGAA-AGAAG--AGTT-----AAACTAGAT------ACGATGA--AAA---GATCAATATATAT-TGTACTAT-----G-T------CA--CCA--TAAGAGCC-TT--T-TGAAA---CGCATAAC-ATTTCTATAATTG-TATGGCGTAA-TAT-AATTTC-AATGAAATGAATATTAATAGAT----ATCTTCTTTGAT-ATA---AAATAATATA---ATTTTTTTATTA-TTCAGTT-TTATT-AAAG--TAACACCAGGGACACA--CTTTCC-A-G--CTGT--AGC-ATGTATAATC--------CTTCAGAT-A----T--CTA-CGA-AA-TGG-AACA--ATTTG-TTTTTT-----GCATT-TT-TGTTGTT-T--ATTGCAGTAT--TTAAT-------TAG-ATAA-TCAA-AT--TA-AAAATG-AAAAAATTAC--A--A-ATAAGCGTCA-T-CAT-TT-TTca
gi|4 : aatgcaaaaatagattagctcaTTGTG----AT-CA-TTCGTATA--T-TATTATAT-------AA-T-A-CATT--------AC----GT-TTT---TAAA-T--G---A-TTTGGTTG-----AA-TGTGA-ATATTCCATAAA-ACTAACCTTGA-CACTGCAT--GG--ATACACAT----TAC-ATACGATTG-T-AAGA-AGCT-AATA--T-TTT--GAACAAATTTCCATCATG-CGGA--TT--TTG-TTCAATATA---C-TGCCATGTCCC---AAAT-TT--ATTTTTTCATTACTA-T---CGAGTTC-GAAA-ATATG--CTAAGAA-AAAA--AA-AACGTC-TTTCAT-TCAATTGTAAAGC-ATA-TT-CTTTAAAAG-A
gi|4 : tatatggcgtcgatttcaaaatgtctaaatG-GAAT--AAAGCG-GA--T---GG--C-TGACAG-C-T---------TCAA-CA-----AA-TTC--------TGT---AAT------T-------GG-TCT-TTAAA--TG-TT-C--TTCTTTCT---TT-CA--CATAA-TCT--------AATC--GTGT-AA---------CTT------G-AAACAATATGTCCTTGCATTGT-------TACA-GAAAAAGAAAAATCGTTGTATTGA-TCAATATAATCCTCTTTGTGCACCTCATATCTG-ACGTCATC-TGAATA-ATTAT-T-CATG-GAAATTGACAAG--T-A-T-ACTGCC----GAGGGACAAAGATCACCTGAA--GGATG-ATAGAGAAAG---A--AAAA--TTCTCAA-CAAAG-AT--------ATG-A--TATAAACTACATTCGTATATTCTGATGTTGTCTTTTAATGTATACCTATaatgtctagtttaaaagttactagcccttttgtgcaactgggaataaagcggatggctgacagcttcaacaaattctgtaattggtctttaaatgttcttctttctttcacataatctaatcgtgtaacttgaaacaatatgtccttgcattgttacagaaaaagaaaaatcgttgtattgatcaatataatcctctttgtgcacctcatatctgacgtcatctgaataattattcatggaaattgacaagtatactgccgagggacaaagatcacctgaaggatgatagagaaagaaaaattctcaacaaagatatgatataaactacattcgtatattctgatgttgtcttttaatgtatacctat
gi|5 : tatatggcgtcgatttcaaaatgtctaaatttgtgatcattcgtatattattatataatacattacgtttttaaatgatttggttgaatgtgaatattccataaaactaaccttgacactgcatggatacacattacatacgattgtaagaagctaatattttgaacaaatttccatcatgcggattttgttcaatatactgccatgtcccaaatttattttttcattactatcgagttcgaaaatatgctaagaaaaaaaaaacgtctttcattcaattgtaaagcatattctttaaaagaaatgtctagtttaaaagttactagcccttttgtgcaactgATGTTGTGCCCCGT-CA-T-CGCAT---T-TATT-TATATACCCTAACT-A-TATTTCCTT-AAACACCCGT-TTTAGCTAAACT--GCCCA-TTTTGTTG-----AA-TGTACTATATTTCAT-TTTACTCACCTTGA-C--TA-ATTGGAA-AAACAC-T----TAC-A-ACGATTG-CCAAGA-A-TTGAATACCT-TTTAAG-ACAA---TTC-T-ATGGC-GAATTT--TGG-TCAAATAAA---TATG-CATGTTCTCAAAAATGGT--A--ATTT--ATAC-A-TACATAAG-TCAGAAA-ATATGAAC-AAGAA-AAAA--AA-A---TAATTTCAT-T-AA-TGTAAAACTATA-TT-TTTGAAAAG-ATTCTG-AAATCTAAAGCCCGG--TCAAG---TGTGACAGGCAT---------TCAAACA-----AAATT---------TGT---AAA------T-------TG-TCT-ATAAAA-TGATTAC--TT-----T---TTGCA--AGTAAATCT-------AAATCCGTTGTTA----------CTT------G-AAA---TATGTCCTTTCGTG-T-------TACCAAAAAAAGAATAACCTGTGTAATGAATCAA-AT--TCC-CTTTG-GCACCTCATATCTG-ACGTCATC-TGAATA-ATTAT-T-CATGCGAAAATGA-AAGGTT-A-TAA--GGCGCAAGAGGG--AAAG-T---ATGAA--GG-TG-ATAG----AAAAGA--AAAA--TT-TCAA-C-AAG-AT---------TGTAATTATACACT---TCCGTATTTTCTCATGT
gi|6 : gaatcgatttcaaaaatgtcctaaTTGTGA-A-GC-TGTTCATTCGTGGTTGTT-GTTTCTATGTATATTCAAGAATAGTAGAACAATGTCCGATGTATCCAAGCTTTTTGCTAGATCTGTGAG-AGAAG--AGTTGGTGCACCTTAGGGTTATTTAC-AGAACCAAACTTAGTCA---GGTATAT----TATCGTTGG-TTTGGGACATTACA--TAAGAGCC-TTGTTGAAAAAATTCGCATA-TTATTTTTATAATTGCTA--GCGTAAAT-T-A-TGTCGA-TGAAATGAA-----AGATATGATGATCTTCTTTGATTATATGGAA------CATAAAT---------A-TTCAATTGCTATT--AAGCTTAACACCAGGGACA-AGTTTTTTC-ATGCCCTATTGAGCTATGCATAA-TATGGGTTACTT--G-T-AAGGGT--CTATCAATAACTGGTAACACCATTTG-TTTTTTTTGGGGCATTATTGTGTTGTTGTGAATTTTGGCATTGTTGGTTGATTCCTAGAATAA-TCAA-AT--A--AAGATG-AAGAAATTACTTT--ATAAAAGCGTCA-TCCAT-TTCTTTA---TT---A----T-ATCATACGTTC--G-ATAATAACTGAG-CA---TTTTTGTTGAAACCCATGACC
gi|7 : TCCTTACCCTTACTTGTCAGTTATATT----AATTTTTA--TGTGATT-ATTGATCA-CTAACGAT-CTTGA-----TA-TTGT-ACATGT----ATT-GCAAAT--T---ATAATTCTTTAA-CAT-AGTTACAATA-TTACAT-CAGT----GT-CTA-ATATCTTTGGATGTCTTA-AATG-GAGAACAATGTA--AAAC--TTAA---TTTTGC-AATATA-TGAGTAGAAGCTAGGT-----A---TAT--------ATGACAA--AAA---GCATA---TGCAC-T------------G-TTT---GTA--GCAAATAATTTCT-TT--CCTATTC---TTCA-A-T-ATTTCTATTATT---A--GCATAT-T-T-T-TGCC-A-AAAAA-GGA-----GTAAAT----ATTTTGTTTGATCAAA---AA------TT---AT---------A-TCTAATT-TAGTATGA----TGACACCAAAGACACA--TGTTTC-A-G--CTGT--AAT-ATGTA-AA-C--------TCT--TTT-A----TTGCTA-TTA-AA-TGG-GTCA--ATTCA-TTTATT-----GCATA-TTTGATT-TT-C--GTCGCAGT-T--TGAAT-------TAG-TTCG-TCAA-AA--TTAAACATG-CTAAAAGTCC--AATATATAAGACTTA-T-GAT-TT-TGTT---TT---ACCTCT-ATCATA--TTCTTG------AG---AAACA---TATT--TTGGAA---ATGACca
gi|8 : TA-AAAT--AACGA--GG--T---GATAT-TGACAG-CATCCAAGAGTCTCAA-CATTGTCAA-TTAAATAAAAATGT---GAAATTAGTT-------TG-TCTTATAAAACTG-TTACATTT-----C---TT-CATAGGTAA-TCTGTTTCTCTAATCC-TTGT-ATGCCTAATTACTTCGATAAG-AGAT-ATGTGTCCTTGCGTATGGGGAGGATACC--AAAAAGAAAA-CCTGTGTAATGAATCAATATA-GCC-CTTTGCGCATCTCATATCTG-ACGTCATC-TGAATACATTAT-T-CATG-GAAAATGA-AAG--T-A-T-A--GGC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---AAGAAAA--TT-TCAA-CAAAG-ATATGTACAAATGTAATTATACACT---TCCATATTTTCCGATGTTGTC-CTCAATGT-TACCAATGAAATAAACTATACCAATAtcatata
gi|9 : ctatgtataagatcatgatgaaatgtgattaTTCTG----GTGCA-T-CGTATC--TCTATT-TAT-TAACCTAATT-AATACTT---TGAAAC----ACGTTT---TAAA-T--G---A-TTT-GTTG-----AAATGTG--ATATTCCAT-TA-ACTA-CCTTGAACA-TG-AT--GGA-AAACACAT----TACAA-ACGATTG-T-AAGA-A----ACTA--TATTT--G-AGAA---TTCAT-ATG-C-GA--TTCGTGGATC-AATATACCGT-GG-CATGTCCA---TAATTTTAAA--TTTTCATTAC-ACT---TAAC-TT-GAAAGATATG--C-AAGAATAAAATTTATA---TC-TTTCATCC-A--TGTAACACTATACTT-CTTGAAAAGAAT-CTGAAAAT--AAAC---GGAAT---G---C-TGA
Alignments
lowQualScore : 1111 1 22222 1 1 22222 1111 2222 111 1 11111 11 1111 1111 11 111 1 111111 111 11111 111 111111111 11 222 111 11111 222222222 11111 333333333 111 33333333333333 22 222222222 1 333333333 66666666666666666666666666666666666 1 2222222222 11 11 11 11 11 2222 11 222 11 111111111111 11 222222222 1 111 1 1 2222 1 11 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 222 222 222 1 1 1 33333 4444444 88888888888888888888 11 11 11 111 1 1 44444444 11 1 1 1 111 1 1 11 111 1 11 2222 1 1 111 111 1 1 888888888888888888888 11 222222 11 11 11 22222222 2222 1 111111 1 1 1111 11 11 2222 22 11 22222 444444444 11 22222222222 333333333333333 111 11 11 1 11 111 222 1 222222 1111 1 444444444444444444444444444 11 3333333333 11111111111111 11111 1111 1111111 22222 11111 111 11111111 111 111 111 111
lowQualScore : 2222 5 5 1 55555 5 1 1 5 5 22222 2222 5 2222 5 77 000 5 1 44444 5 33 1111 5 5 5 66 5 0000 5 5 5 5 5 55 5 66 5 33 5 000 5 5 1 77 77 5 1 777777 5 111 2 33333 6 6 111 6 6 6 99 6 6 555555555 6 666 55 7 6 6 6 8 5 77 333 77 000 66666 6 666666666 6 66666 6 333333333 111 11111111111111 6 6 22 6 99 111111111 3 99 6 000000000 22222222222222222222222222222222222 0 8888888888 99 66 6 0 11 88 8 3 8 8 00 8 8 8 8 11 8 8 8 11 5555 11 6 222 11 8 8 888888888888 11 8 8 0 8 999999999 0 0 444 0 0 0 7 7 7 7 0000 6 3 5 77 5 5 5 5 5 1 5 5 5 5 5 1 5 5 1 1 1 7 7 7 7 0 7 6 1 6 7 7 3 5 5 5 111 1 777 333 3 3 3 33333 6 6 7 7 6 3333333 7 11111111111111111111 00 11 33 3 777 0 0 3 44444444 0 11 8 8 0 0 0 777 0 0 33 111 3 2 0 33 1 4444 1 2 3 666 777 3 3 777777777777777777777 1 22 222222 33 3 33 77 66666666 3 3 1111 0 333 888888 3 0 0 8 8 0 8 7777 8 8 1 1 8 8 11 1 11 0 2222 8 6 8 11 11 00000 5 555555555 3 1 11 11111111111 222222222222222 8 0 444 11 11 5 8 11 5 444 0 333 6 99 6 6 888 3 6 6 222222 4444 3 555555555555555555555555555 6 6 77 99 4 99 6 6 99 99 6 8888888888 88888888888888 6 5 6 6 6 99 77 66666 999 3 6666 1 77 1 8888888 5 5 5 44444 77 77777 0 5 5 5 5 555 33333333 5 99 99 555 111 111 99 1 111
lowQualScore : .... . . . ..... . . . . . ..... .... . .... . .. ... . . ..... . .. .... . . . .. . .... . . . . . .. . .. . .. . ... . . . .. .. . . ...... . ... . ..... . . ... . . . .. . . ......... . ... .. . . . . . . .. ... .. ... ..... . ......... . ..... . ......... ... .............. . . .. . .. ......... . .. . ......... ................................... . .......... .. .. . . .. .. . . . . .. . . . . .. . . . .. .... .. . ... .. . . ............ .. . . . . ......... . . ... . . . . . . . .... . . . .. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . ... ... . . . ..... . . . . . ....... . .................... .. .. .. . ... . . . ........ . .. . . . . . ... . . .. ... . . . .. . .... . . . ... ... . . ..................... . .. ...... .. . .. .. ........ . . .... . ... ...... . . . . . . . .... . . . . . . .. . .. . .... . . . .. .. ..... . ......... . . .. ........... ............... . . ... .. .. . . .. . ... . ... . .. . . ... . . . ...... .... . ........................... . . .. .. . .. . . .. .. . .......... .............. . . . . . .. .. ..... ... . .... . .. . ....... . . . ..... .. ..... . . . . . ... ........ . .. .. ... ... ... .. . ...
lowQualScore : 1111 7 7 4 77777 7 4 4 7 7 99999 1111 7 0000 7 99 000 7 4 33333 7 66 6666 0 0 0 99 0 6666 0 0 0 0 0 99 0 99 0 88 7 000 7 7 4 99 99 7 4 333333 7 777 5 33333 7 7 777 7 7 7 22 7 7 888888888 7 888 88 3 7 7 7 0 7 99 666 99 000 77777 7 777777777 7 77777 7 333333333 777 88888888888888 7 7 22 7 22 888888888 3 22 7 888888888 22222222222222222222222222222222222 0 4444444444 44 88 0 8 66 88 0 2 0 0 88 0 0 0 0 00 0 0 0 00 0000 00 0 000 00 0 0 000000000000 00 0 0 8 0 888888888 6 8 000 8 0 0 3 3 3 3 3333 7 7 0 55 5 5 5 0 5 0 5 5 5 0 5 0 5 5 0 0 0 3 3 3 3 7 3 7 0 7 3 3 3 5 0 0 555 0 333 333 3 3 3 33333 7 7 3 3 7 3333333 3 22222222222222222222 22 00 22 2 555 0 0 2 88888888 8 00 0 2 0 0 0 555 0 0 88 000 2 5 0 88 0 5555 0 0 3 777 777 3 3 000000000000000000000 2 00 222222 22 2 22 00 00000000 2 2 2222 0 555 555555 2 0 0 0 0 8 0 0000 0 0 0 0 0 0 00 4 00 8 8888 0 0 0 22 00 00000 6 444444444 2 0 00 00000000000 222222222222222 0 8 000 00 00 0 0 00 0 000 8 222 7 22 7 7 777 3 7 0 777777 2222 3 888888888888888888888888888 7 7 00 22 2 22 7 7 22 22 7 5555555555 00000000000000 7 2 7 7 7 22 77 77777 333 2 0000 7 99 7 6666666 7 7 7 00000 11 44444 7 7 7 7 0 777 11111111 7 22 22 000 777 777 22 7 777
consensus : ATGTTGTG----GT-CA-T-CGCATA--T-TATT-TAT-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT---TAAA-T--G---A-TTT-GTTG-----AA-TGTG--ATATTTCAT-TT-ACTAACCTTGA-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-AAGA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATA---T-TG-CATGTCCC---AAATGTT--A--TTTTCAATAC-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAA--TA-A---TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-ATAAAA-TG-TTAC--TT-----T---TT-CA--GGTAA-TCT-------TAATC--TTGT-A----------CTT------G-AAA--ATATGTCCTTGCGTNTT-------TACC-GAAAAAGAAAAACCTGTGTAATGAATCAATATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTAT-T-CATG-GAAAATGA-AAG--T-A-T-A--GGC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--AAAA--TT-TCAA-CAAAG-AT--------ATGTAATTATACACT---TCCGTATTTTCTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAATATGATGATAGTCTACCTAAATTGGATATCTAAAATGTTTTTACAGG--GGTAATTTTGTTGGAATGAATTGGCGTGTCCTCGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTCCGCCGCGTGTTACTTTTTTAAAACGTAAACACCATGGGACATTAAAGACAAAACAATGCCGTTATTNTATTATTTATTAGAAATAATATTCATGATTATTGTGATTCCANACTTTTCTTAAGAACNTATGTAANTANATTGAATCAATTTACAGTTTTGTATAATCAGTAAGCATACATTAAAGTCGCGTCTTTTGATTTAAGTAAACACGAA-GGACAATANAGGGTAACATGAAGTACAAAAAGTGTACATT-AATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGAGCGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTNGCAATATGGTTGATCGATATT-CAAAAAGTC---TTTAAAAAAAAA-AATTT-TGCA-GCTTTTGG-----TAACAGCAACGGACTGTAAT-------GGTAACATTAAGGACA--------------------TTTGGAGTTTT-GTTTTTTTTTTN-AATCTAGAT-GCTCTATATTTAATCTA---TGTAG-TTTTTTTG-GTAGTTTTTTC-TG--A-AAATCTAAATGCTCT--ATATATA-ATCTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-A-TAAGTATAGAATTAA-AAAAAA--ACNAT---CCGGAANCATTAAAAAGGATTAGT-CCTTC-C-TGTTACAGCTTTGTCTCTGC-TGTTAC-AG------TG-T-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCATT-ATTGATCA-CTAATGAT-CTCGA----CTT-TTGTTAAATAT----ACT-GCAAATATT---ACTATTTTTCAA-CAT-AGTTGTGA-A-CCATGT-CATT----GT-GTT-ATGTCTTTGTATNTTNAA-AATA-TAGAACAATGTC--ATGT--TCAA---TTTTGC-AAATTT-TGAG-AGAAG--AGTT-----AACTTAGG-------ACGANAA--AAA---GGTCA---TGTAT-T----TAT-----G-TTT---ACA--ACA--TAAGAGCC-TT--TGTAAAA---CGCATA-T-ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TGAAATGAA-----ATATAT----ATCTTCTTTGAT-ATA---AA------TA---AT---------A-TTCAATT-TTATTTAAAG--TAACACCAGGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAA-C--------CTT--GAT-A----T--CTA-CGA-AA-TGG-AACA--ATTTG-TTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCAGTAT--TTAGT-------TAG-ATAA-TCAA-AA--T--AAGATG-AAAAAATTAC--A--ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCC--G-A-AATAA---AGACA---TTTT--TTGAAA---ATGACC
Reference ( family-3707 ) : ATGTTGTG----GT-CA-T-CGCATA--T-TATT-TAT-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT---TAAA-T--G---A-TTT-GTTG-----AA-TGTG--ATATTTCAT-TT-ACTAACCTTGA-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-AAGA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATA---T-TG-CATGTCCC---AAATGTT--A--TTTTCAATAC-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAA--TA-A---TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-ATAAAA-TG-TTAC--TT-----T---TT-CA--GGTAA-TCT-------TAATC--TTGT-A----------CTT------G-AAA--ATATGTCCTTGCGTNTT-------TACC-GAAAAAGAAAAACCTGTGTAATGAATCAATATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTAT-T-CATG-GAAAATGA-AAG--T-A-T-A--GGC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--AAAA--TT-TCAA-CAAAG-AT--------ATGTAATTATACACT---TCCGTATTTTCTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAATATGATGATAGTCTACCTAAATTGGATATCTAAAATGTTTTTACAGG--GGTAATTTTGTTGGAATGAATTGGCGTGTCCTCGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTCCGCCGCGTGTTACTTTTTTAAAACGTAAACACCATGGGACATTAAAGACAAAACAATGCCGTTATTNTATTATTTATTAGAAATAATATTCATGATTATTGTGATTCCANACTTTTCTTAAGAACNTATGTAANTANATTGAATCAATTTACAGTTTTGTATAATCAGTAAGCATACATTAAAGTCGCGTCTTTTGATTTAAGTAAACACGAA-GGACAATANAGGGTAACATGAAGTACAAAAAGTGTACATT-AATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGAGCGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTNGCAATATGGTTGATCGATATT-CAAAAAGTC---TTTAAAAAAAAA-AATTT-TGCA-GCTTTTGG-----TAACAGCAACGGACTGTAAT-------GGTAACATTAAGGACA--------------------TTTGGAGTTTT-GTTTTTTTTTTN-AATCTAGAT-GCTCTATATTTAATCTA---TGTAG-TTTTTTTG-GTAGTTTTTTC-TG--A-AAATCTAAATGCTCT--ATATATA-ATCTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-A-TAAGTATAGAATTAA-AAAAAA--ACNAT---CCGGAANCATTAAAAAGGATTAGT-CCTTC-C-TGTTACAGCTTTGTCTCTGC-TGTTAC-AG------TG-T-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCATT-ATTGATCA-CTAATGAT-CTCGA----CTT-TTGTTAAATAT----ACT-GCAAATATT---ACTATTTTTCAA-CAT-AGTTGTGA-A-CCATGT-CATT----GT-GTT-ATGTCTTTGTATNTTNAA-AATA-TAGAACAATGTC--ATGT--TCAA---TTTTGC-AAATTT-TGAG-AGAAG--AGTT-----AACTTAGG-------ACGANAA--AAA---GGTCA---TGTAT-T----TAT-----G-TTT---ACA--ACA--TAAGAGCC-TT--TGTAAAA---CGCATA-T-ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TGAAATGAA-----ATATAT----ATCTTCTTTGAT-ATA---AA------TA---AT---------A-TTCAATT-TTATTTAAAG--TAACACCAGGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAA-C--------CTT--GAT-A----T--CTA-CGA-AA-TGG-AACA--ATTTG-TTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCAGTAT--TTAGT-------TAG-ATAA-TCAA-AA--T--AAGATG-AAAAAATTAC--A--ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCC--G-A-AATAA---AGACA---TTTT--TTGAAA---ATGACC
gi|1 : ATGTTGTG----GT-CA-T-CGCAT---T-TATT-TAA-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT----AAA-T--G---A-TTG-GTTG-----AA-TGTG--ATATTTCAT-TT-AGTAACCTTGA-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-AAGG-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-TA--TT--TGG-TCAAATATA---T--G-CATGTCCC---AAATGTT--A--TTTTCAATAC-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAAA-TA-A---TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---ACA------T-------TG-TCT-ATAAT--TG-TTAT--TT-----T---TTTCA--GGTAA-TC---------AATC--T---------------------------------ATG---------CTT-------TACA-AAAAAATAAAACACTGTGTA-TGAATCAATATA-TCC-CTTTGCGCACCTCATATCTGCACGTCATCCTGAATAC-TTATGT-CATG-AGAAAT-A-AAG--TGA-T-A--GGCC---GAGGG--AAAGTTA--CTGAAAGGG-TGGATAG----AA---A--AGAAATTT-TCAAACAAAGGAT--------ATTTAATTATACACT---TCCGTATTTTCTGATGTTGTC-CTTAATGT-TACCATCGAAATAAACTATAACAATATGATGATAGTCTACCTAAATTGGATATCT-AAATG-TTTTACAGAGCGGTAATTTTGTTGGAATGAATTGGCGTGTCCTTGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTCCGC--CGTGTTACTTTTTTAAAACGT-AACACCATGGGACATTAAAGACAAAACAATGCCGTTATTTTATTATTTATTAGAAATAA-ATTCATGATTATTGTGATTCCATAC-TTTCTTAAGAACTTATATAACTAGATTGAATCAATTTACAGTTTTGTATAATCAGTAAGCATACATTAAAGTCACGTCTTTTGATTTAAGTAAACACGAACGGACAATACAGGGT-ACATGAAGTAC--AAAGTGTACATT-AATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGA-CGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTTGCAATATGGTTGATCGATATT-C-AAAAGTC---TTTTAAAAAAGA-AATTT-TGCA-GCTTTTGG-----TAACAG-AACGG-CTGTAAT-------GGTAACATTAAGGACA--------------------TTTGGAGTTTT-GGTTTTTTTTAT-AATCTAGAT-GCTCTATTTATAATCTA---TGTAG-TTTTTTTT-GTAGTTTTTTCTTGTTA-AAATC---------------TATA-ATCTATGTG-TG-CTATAAA---AAAT-AT-TATTA--TCAA-TAAGTATAGAATTAA-ATAAAA--ACAATCAACCGGAAACATTAAAAAAGATTAGT-CCTTC-C-TATTACAG-TTTGTCTCTGC-TGTTAC-AG------TGCT-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCCTTAATTGATC--CTTATGA--CTCGA----CTT-TTGTTAAATATACTAACT-GCAA--ATT---ACTA-TTTTCAA-CAT-AGTTGTGA-ATCCATGT-CATT----GT-GTT-ATGTCTTTGTATTTCAAA-AATA-TAGAACAATGTC--ATGT--TC-A---TTTTGC-AAA-TT-TGA--AGAAG--AGTT-----AACTTAGA-------A-GAAAA--AAA---G--TA---TGTA--T----TAT-----GTTTT---ACA--ACA--TAA-AGCCTTT--TGTAAAA---CGCATA---ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TGAAATATA-----ATATAT----ATCTTCTTTGAT-ATA---A--------A---AT---------ATTTCAATT-TTA-TTAAAG--TAACACCAGGGACATA--TTTTTCGA-G--CTGT--AGC-ATGTATAACC--------CTT--GA--A----T---TA-C-A-AA-TGG-AACA--ATTTG-TTTTTT-----GCA-T-TTTTGTCGTT-T--ATTGC-GTAT--TTA-T-------TAG-ATAATTCAACAA--T--AAGATGAAAAAAATTAC-----ATATAAG-GTCA-T-CAT-TT-TTTAAGTTT---A----T--TCAT---TCC--G-A-AATAA---AGACAGTTTTTT--CTG-AA---ATGACC
gi|10 : tatatgggtcgatttcaaaaaatgtctaaA-T-GTCTTTATTTTTG-TA--GCGTAA-T-TTA-TGTCCA-TGAA-TGAA------TATAT----ATCTTCTTTGAT-CTA---AAAA----TG---AT---------A-TTCAATT-TTATT--AAG--TACCACC-GGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAA----------CTT--GATAA----T--CTA-CGA-TA-TGG-AACA--ATTTGTTTTTTT-----GCA-T-TTTTGTTGTT-TA-ATTGCAATAT--TTAGT-------TAG-ATAA-TCAA-AA--TA-AAGATG----AAATTA---A--ATATAAGCGTCA-T-CA--TT-TTTG---TT---A----T-cat
gi|11 : aaaaATGTTGTG----GT-CA-T-CGCA-A--T-TATT-TAA-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT----AAA-T--G---A-TTT-GTTG-----AA-TGTG--ATATTTCAT-TT-AGTAACCTTGA-CA-TA-AT--GGA-AA-CACAT----TAC-A-ACGATTG-T-AAGA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATA-----TG-CATGTCCC---AAATGT------TTTTCAATAC-A-T---T
gi|12 : tgggtcgatttcaaaaaatgtctaaATGTTGTG----GC-CAAT-C-CAT---T-TATT-TATCTAAC-CAACTTA-TAGTTG--T-AAAC----GT-TTT----AAA-TTGG---A-TTT-GTTGTCGATAA-TGTG--ATATTTCAT-T---CTAAACCTGA-CA-TA-AT--GGATAAACACAT--------A-ACGATTGCT-AAGAGA-TT-AATA--T-TTTTTA-ACAA---TTCAT-ATG-CCAA--TT--TGG-TCAAATATA---T-TG-C-TGTC
gi|13 : tatatggtcgatttcaaaaaatgtctaaAAG-TC-GAAA-ATATG--C-AGGAA-AAAA--TA-A---TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGTAACAAA------TTTTACTATGTTCT-AT-AAA-TG-TAAA--TT-----TCTATT-CA--GATAA-ATC-------TAATCG-TTGT-A----------CTT------GAAAA--ATATGTCC
gi|14 : TCAATTTACAGTTTTTTATAATCAGTAAGCATACATTAAAGTCGCATCTTTTGATTTAAGTAA-CACGAA-GGACAATAAAGGGTAACATGAAGTGCAAAAAGTGTACATT-AATCGATTTTATCCAA
gi|15 : --------------------TTTGGAGTTTTGGTTTTTTTTTTA-AATCTAAA--GCTCTATATTTAATCTA---TGTAGCTTTTTTTG-GTAGTTTTTTTATG--A-AAATCTAAATGCTCT--ATATATA-ACCTATGT
gi|16 : TTTTTT--------AAATCTAAATGCTCT--ATATATA-ATGTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-ACTAAGTATTGGATTAATAAAAAA--ACCAT---CCGAAAACATTAAAAAG
gi|17 : TAT--TTAGT-------TAG-ATAA-TCAA-AAATC--AAGATG-AAAAAGATAC--A--ATATAAGCGTCATT-CATCTT-TTTG---TCGGGA----TAATC-TA--TAC--GAA-AATAA---AGACA---TTTT--TTGAAA---
gi|18 : CTATACCAATATGATGATAGTCTACCTAAACTGGATATCTAAAATGTTTTTACA-G--GGTAATTTTATTGAAATGAATTGGCGTGTCCTCGACAGACGCCAC
gi|19 : CTAACCTTGA-CA-TG-AT--GGA-AAACACATTATGTAC-A-ACGATTG-T-AAGA-A-CT-AATA--T-TTT--
gi|2 : ATGTTGTG----GC-CA-TGCGCATAAATATATT-TAT-TAGC-TAACT-A-TATTT-----AAAC----GT-TTT---TAAA-T--G---AATTT-GTTG-----GA-TGTG--ATATTTCAT-TT-ACTAACCTT-A-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-A-GA-A-TT-AATA--T-TTT--G-ACAA---TTAAT-ATG-C-AA--TT--TGG-TCAAATATA---T-TG-CATGTCCC---AAATGTT--A--TTTTCAATAA-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AGAA--TA-A---TA-TTTCAT-T-A--TGTAAAAC---A-TTATTTGAAAAG-AT-CTG-AAAT--AAAA---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-ATAAA--TG-TTAC--AT-----T---TT-CA--GGTAA-TCT-------TAATC--TTG--A----------CTT------G-AAA--ATATGTCCTT-CGTGTT-------TACC-CAAAAAGAAAT-TCTGTGTAATGAATCA-TATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTAT-TTCATG-GGAAATGA-AAG--T-AGT-A--GG-----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--AAAA--TT-TTAA-CAAAG-AT--------ATG-AATTATACACT---TCCGTATTT-CTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAGTATGATGATAGTCTACCTAAATTGGA-ATCTAA--TGTTTTTACAGG--GGTAATTTTGTTGGAATGAATTG-CGTGTCCTAGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTC-GCCGCGTGTTACTTTTT-AAAACGTAAACACC-TGG-ACATTAAAGACAAA-CAATGCCGTTATTGTATTATTTAT-AGAA-TAATATTCATGATTATT-TGAT-CCAAACTTTTCTTAAGA-CGTATGTAAATATATTGAATCAATT-ACAGTGTTGTATAATCAGTA-GCA-ATATTAA-GTCACGTCTTTTGATTTAAGTATACACGAAAGGACAATAGAGG-TAACATGAAGTACAAAAAGTGTACATTTAATCGATTTTATCCAACTGAATATTTCAATATTTT-CAATACAGATGGAGCGTAATT-GATATAATTGTTGCAAATAGTTATAAATA---ATTAACAATATAGTTGATCGATATT--AAAAAGTC---TTTAAAAAAAAAGAAATT-TGCA-GCTTTTGG-----TAACAGCA-CGGACTGTAAT-------GGTA-CATTAAGGACA--------------------TTTGGATTTTT-TTTTTTTTTTTA-AATTTAGAT-GCTCTATATTTAATCTA---TGTAG-GTTCTTTG-GTAGATTTTTC-----A-AAATCTAAATGCTCC--ATATATA-ATTTATGTG-TG-CTAT-AA---AAAT-AT-TATCA--TC-A-TAAGTATAGAATTAA-AAAAAA--ATAAC---CCGGAACAATTAAAAAG-ATTAGT-CCTTC-C-TGTTACAGTTTTGTCTCTGC-TGTTAC-AG------TG-T-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCATT-ATTGATCA-CTAATGAT-CTCGA----CTT-TTGTTAAATAT----ACT-GCAGATATT---ACTATTTTTCAACCAT-AGTTGTGA-A-CCATGT-CATT----GT-GTT-ATGTCTTTGTATATTCAA-AATA-TAGAACAATGTC--ATGT--TCAA----TTTGC-AAATTT-TGA--AGAAG--AGTT-----AACTTA-G-------ACGAAAA--AAA---AGTCA---TATAT-T----TAT-----G-TTT---ACA--ACA--TAA-AGCC-TT--TGTAGAA---CGCATA---ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TAAAATG-A-----TTATAT----ATCTTCTTTTAT-ATA---AA------TA---AT---------A-TTCAATT-TTATTTAAAG--TAACACCAGGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAA-C--------CTT--GAT-A----T--CTA-CGA-AA-TGG-AACA--ATTT--TTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCAGTAT--TTAGT-------TAG-ATAA-TCAA-AA--T--AAGATG-AAAAAATTAC--A--ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCC--G-G-AAT-A---AGACA---ATTT--TGGAAA---AGGACC
gi|20 : T-TTTAG--TT---A----T-ATCATA--TCC--G-A-AATAA---AGATA---TTTT--TTGAAA---ATGACC
gi|3 : GATATCACAAAAAGTCCTGTTTAAAGAAAAA-CGTTTCTGAAAGTTTTTGGGTCCATAA--GCAACAGACT--AATTATTCCAGGTAACATAACGGACAGTTAGGATTTTTCGGTGTTTCTTGGGGTTTT-ATTTTTTTTTTTTAATCTAAATCGCTCTATATTTA-TCTACCTTGTAG-TTTTTTGGCGT-GTTTTATC-TG--TTAGATCTAAATGCTCTCCATATATATAT-TATGTGGTGTCTAT-AACAAAAATCATGTATTAAATC-A-TAAGT-CA-AATCAG-GAAAAATCACCA-----CGAAATCATTAAAAGGAATTAGTTCCTTCACATGTTAC--CCCTGTCTTAGCATGTTCCTAGATTCTCTG-TTTGAATTGCTGGTCCCTCCTGTTACTCGTCAAGAGTAT--AAAAATA---AGATATCAA--AT--ATCAGCTAATAGCACTCGAGGCTCTCGTTGTTAAA-AT----GCTTGCAAATATTTGAA--ATTTTTCAA-CATTAGTTATGA-A-CCATAC-CATT----GT-GTTTATGTCTTTGCATTTTGAA-AATA-TAGAA-AATGTT--AAGT--TCAAA--TTTTGC-AAATTT-TGAA-AGAAG--AGTT-----AAACTAGAT------ACGATGA--AAA---GATCAATATATAT-TGTACTAT-----G-T------CA--CCA--TAAGAGCC-TT--T-TGAAA---CGCATAAC-ATTTCTATAATTG-TATGGCGTAA-TAT-AATTTC-AATGAAATGAATATTAATAGAT----ATCTTCTTTGAT-ATA---AAATAATATA---ATTTTTTTATTA-TTCAGTT-TTATT-AAAG--TAACACCAGGGACACA--CTTTCC-A-G--CTGT--AGC-ATGTATAATC--------CTTCAGAT-A----T--CTA-CGA-AA-TGG-AACA--ATTTG-TTTTTT-----GCATT-TT-TGTTGTT-T--ATTGCAGTAT--TTAAT-------TAG-ATAA-TCAA-AT--TA-AAAATG-AAAAAATTAC--A--A-ATAAGCGTCA-T-CAT-TT-TTca
gi|4 : aatgcaaaaatagattagctcaTTGTG----AT-CA-TTCGTATA--T-TATTATAT-------AA-T-A-CATT--------AC----GT-TTT---TAAA-T--G---A-TTTGGTTG-----AA-TGTGA-ATATTCCATAAA-ACTAACCTTGA-CACTGCAT--GG--ATACACAT----TAC-ATACGATTG-T-AAGA-AGCT-AATA--T-TTT--GAACAAATTTCCATCATG-CGGA--TT--TTG-TTCAATATA---C-TGCCATGTCCC---AAAT-TT--ATTTTTTCATTACTA-T---CGAGTTC-GAAA-ATATG--CTAAGAA-AAAA--AA-AACGTC-TTTCAT-TCAATTGTAAAGC-ATA-TT-CTTTAAAAG-A
gi|4 : tatatggcgtcgatttcaaaatgtctaaatG-GAAT--AAAGCG-GA--T---GG--C-TGACAG-C-T---------TCAA-CA-----AA-TTC--------TGT---AAT------T-------GG-TCT-TTAAA--TG-TT-C--TTCTTTCT---TT-CA--CATAA-TCT--------AATC--GTGT-AA---------CTT------G-AAACAATATGTCCTTGCATTGT-------TACA-GAAAAAGAAAAATCGTTGTATTGA-TCAATATAATCCTCTTTGTGCACCTCATATCTG-ACGTCATC-TGAATA-ATTAT-T-CATG-GAAATTGACAAG--T-A-T-ACTGCC----GAGGGACAAAGATCACCTGAA--GGATG-ATAGAGAAAG---A--AAAA--TTCTCAA-CAAAG-AT--------ATG-A--TATAAACTACATTCGTATATTCTGATGTTGTCTTTTAATGTATACCTATaatgtctagtttaaaagttactagcccttttgtgcaactgggaataaagcggatggctgacagcttcaacaaattctgtaattggtctttaaatgttcttctttctttcacataatctaatcgtgtaacttgaaacaatatgtccttgcattgttacagaaaaagaaaaatcgttgtattgatcaatataatcctctttgtgcacctcatatctgacgtcatctgaataattattcatggaaattgacaagtatactgccgagggacaaagatcacctgaaggatgatagagaaagaaaaattctcaacaaagatatgatataaactacattcgtatattctgatgttgtcttttaatgtatacctat
gi|5 : tatatggcgtcgatttcaaaatgtctaaatttgtgatcattcgtatattattatataatacattacgtttttaaatgatttggttgaatgtgaatattccataaaactaaccttgacactgcatggatacacattacatacgattgtaagaagctaatattttgaacaaatttccatcatgcggattttgttcaatatactgccatgtcccaaatttattttttcattactatcgagttcgaaaatatgctaagaaaaaaaaaacgtctttcattcaattgtaaagcatattctttaaaagaaatgtctagtttaaaagttactagcccttttgtgcaactgATGTTGTGCCCCGT-CA-T-CGCAT---T-TATT-TATATACCCTAACT-A-TATTTCCTT-AAACACCCGT-TTTAGCTAAACT--GCCCA-TTTTGTTG-----AA-TGTACTATATTTCAT-TTTACTCACCTTGA-C--TA-ATTGGAA-AAACAC-T----TAC-A-ACGATTG-CCAAGA-A-TTGAATACCT-TTTAAG-ACAA---TTC-T-ATGGC-GAATTT--TGG-TCAAATAAA---TATG-CATGTTCTCAAAAATGGT--A--ATTT--ATAC-A-TACATAAG-TCAGAAA-ATATGAAC-AAGAA-AAAA--AA-A---TAATTTCAT-T-AA-TGTAAAACTATA-TT-TTTGAAAAG-ATTCTG-AAATCTAAAGCCCGG--TCAAG---TGTGACAGGCAT---------TCAAACA-----AAATT---------TGT---AAA------T-------TG-TCT-ATAAAA-TGATTAC--TT-----T---TTGCA--AGTAAATCT-------AAATCCGTTGTTA----------CTT------G-AAA---TATGTCCTTTCGTG-T-------TACCAAAAAAAGAATAACCTGTGTAATGAATCAA-AT--TCC-CTTTG-GCACCTCATATCTG-ACGTCATC-TGAATA-ATTAT-T-CATGCGAAAATGA-AAGGTT-A-TAA--GGCGCAAGAGGG--AAAG-T---ATGAA--GG-TG-ATAG----AAAAGA--AAAA--TT-TCAA-C-AAG-AT---------TGTAATTATACACT---TCCGTATTTTCTCATGT
gi|6 : gaatcgatttcaaaaatgtcctaaTTGTGA-A-GC-TGTTCATTCGTGGTTGTT-GTTTCTATGTATATTCAAGAATAGTAGAACAATGTCCGATGTATCCAAGCTTTTTGCTAGATCTGTGAG-AGAAG--AGTTGGTGCACCTTAGGGTTATTTAC-AGAACCAAACTTAGTCA---GGTATAT----TATCGTTGG-TTTGGGACATTACA--TAAGAGCC-TTGTTGAAAAAATTCGCATA-TTATTTTTATAATTGCTA--GCGTAAAT-T-A-TGTCGA-TGAAATGAA-----AGATATGATGATCTTCTTTGATTATATGGAA------CATAAAT---------A-TTCAATTGCTATT--AAGCTTAACACCAGGGACA-AGTTTTTTC-ATGCCCTATTGAGCTATGCATAA-TATGGGTTACTT--G-T-AAGGGT--CTATCAATAACTGGTAACACCATTTG-TTTTTTTTGGGGCATTATTGTGTTGTTGTGAATTTTGGCATTGTTGGTTGATTCCTAGAATAA-TCAA-AT--A--AAGATG-AAGAAATTACTTT--ATAAAAGCGTCA-TCCAT-TTCTTTA---TT---A----T-ATCATACGTTC--G-ATAATAACTGAG-CA---TTTTTGTTGAAACCCATGACC
gi|7 : TCCTTACCCTTACTTGTCAGTTATATT----AATTTTTA--TGTGATT-ATTGATCA-CTAACGAT-CTTGA-----TA-TTGT-ACATGT----ATT-GCAAAT--T---ATAATTCTTTAA-CAT-AGTTACAATA-TTACAT-CAGT----GT-CTA-ATATCTTTGGATGTCTTA-AATG-GAGAACAATGTA--AAAC--TTAA---TTTTGC-AATATA-TGAGTAGAAGCTAGGT-----A---TAT--------ATGACAA--AAA---GCATA---TGCAC-T------------G-TTT---GTA--GCAAATAATTTCT-TT--CCTATTC---TTCA-A-T-ATTTCTATTATT---A--GCATAT-T-T-T-TGCC-A-AAAAA-GGA-----GTAAAT----ATTTTGTTTGATCAAA---AA------TT---AT---------A-TCTAATT-TAGTATGA----TGACACCAAAGACACA--TGTTTC-A-G--CTGT--AAT-ATGTA-AA-C--------TCT--TTT-A----TTGCTA-TTA-AA-TGG-GTCA--ATTCA-TTTATT-----GCATA-TTTGATT-TT-C--GTCGCAGT-T--TGAAT-------TAG-TTCG-TCAA-AA--TTAAACATG-CTAAAAGTCC--AATATATAAGACTTA-T-GAT-TT-TGTT---TT---ACCTCT-ATCATA--TTCTTG------AG---AAACA---TATT--TTGGAA---ATGACca
gi|8 : TA-AAAT--AACGA--GG--T---GATAT-TGACAG-CATCCAAGAGTCTCAA-CATTGTCAA-TTAAATAAAAATGT---GAAATTAGTT-------TG-TCTTATAAAACTG-TTACATTT-----C---TT-CATAGGTAA-TCTGTTTCTCTAATCC-TTGT-ATGCCTAATTACTTCGATAAG-AGAT-ATGTGTCCTTGCGTATGGGGAGGATACC--AAAAAGAAAA-CCTGTGTAATGAATCAATATA-GCC-CTTTGCGCATCTCATATCTG-ACGTCATC-TGAATACATTAT-T-CATG-GAAAATGA-AAG--T-A-T-A--GGC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---AAGAAAA--TT-TCAA-CAAAG-ATATGTACAAATGTAATTATACACT---TCCATATTTTCCGATGTTGTC-CTCAATGT-TACCAATGAAATAAACTATACCAATAtcatata
gi|9 : ctatgtataagatcatgatgaaatgtgattaTTCTG----GTGCA-T-CGTATC--TCTATT-TAT-TAACCTAATT-AATACTT---TGAAAC----ACGTTT---TAAA-T--G---A-TTT-GTTG-----AAATGTG--ATATTCCAT-TA-ACTA-CCTTGAACA-TG-AT--GGA-AAACACAT----TACAA-ACGATTG-T-AAGA-A----ACTA--TATTT--G-AGAA---TTCAT-ATG-C-GA--TTCGTGGATC-AATATACCGT-GG-CATGTCCA---TAATTTTAAA--TTTTCATTAC-ACT---TAAC-TT-GAAAGATATG--C-AAGAATAAAATTTATA---TC-TTTCATCC-A--TGTAACACTATACTT-CTTGAAAAGAAT-CTGAAAAT--AAAC---GGAAT---G---C-TGA
Alignments
lowQualScore : 1111 1 22222 1 1 22222 1111 2222 111 1 11111 11 1111 1111 11 111 1 111111 111 11111 111 111111111 11 222 111 11111 222222222 11111 333333333 111 33333333333333 22 222222222 1 333333333 66666666666666666666666666666666666 1 2222222222 11 11 11 11 11 2222 11 222 11 111111111111 11 222222222 1 111 1 1 2222 1 11 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 222 222 222 1 1 1 33333 4444444 88888888888888888888 11 11 11 111 1 1 44444444 11 1 1 1 111 1 1 11 111 1 11 2222 1 1 111 111 1 1 888888888888888888888 11 222222 11 11 11 22222222 2222 1 111111 1 1 1111 11 11 2222 22 11 22222 444444444 11 22222222222 333333333333333 111 11 11 1 11 111 222 1 222222 1111 1 444444444444444444444444444 11 3333333333 11111111111111 11111 1111 1111111 22222 11111 111 11111111 111 111 111 111
lowQualScore : 2222 5 5 1 55555 5 1 1 5 5 22222 2222 5 2222 5 77 000 5 1 44444 5 33 1111 5 5 5 66 5 0000 5 5 5 5 5 55 5 66 5 33 5 000 5 5 1 77 77 5 1 777777 5 111 2 33333 6 6 111 6 6 6 99 6 6 555555555 6 666 55 7 6 6 6 8 5 77 333 77 000 66666 6 666666666 6 66666 6 333333333 111 11111111111111 6 6 22 6 99 111111111 3 99 6 000000000 22222222222222222222222222222222222 0 8888888888 99 66 6 0 11 88 8 3 8 8 00 8 8 8 8 11 8 8 8 11 5555 11 6 222 11 8 8 888888888888 11 8 8 0 8 999999999 0 0 444 0 0 0 7 7 7 7 0000 6 3 5 77 5 5 5 5 5 1 5 5 5 5 5 1 5 5 1 1 1 7 7 7 7 0 7 6 1 6 7 7 3 5 5 5 111 1 777 333 3 3 3 33333 6 6 7 7 6 3333333 7 11111111111111111111 00 11 33 3 777 0 0 3 44444444 0 11 8 8 0 0 0 777 0 0 33 111 3 2 0 33 1 4444 1 2 3 666 777 3 3 777777777777777777777 1 22 222222 33 3 33 77 66666666 3 3 1111 0 333 888888 3 0 0 8 8 0 8 7777 8 8 1 1 8 8 11 1 11 0 2222 8 6 8 11 11 00000 5 555555555 3 1 11 11111111111 222222222222222 8 0 444 11 11 5 8 11 5 444 0 333 6 99 6 6 888 3 6 6 222222 4444 3 555555555555555555555555555 6 6 77 99 4 99 6 6 99 99 6 8888888888 88888888888888 6 5 6 6 6 99 77 66666 999 3 6666 1 77 1 8888888 5 5 5 44444 77 77777 0 5 5 5 5 555 33333333 5 99 99 555 111 111 99 1 111
lowQualScore : .... . . . ..... . . . . . ..... .... . .... . .. ... . . ..... . .. .... . . . .. . .... . . . . . .. . .. . .. . ... . . . .. .. . . ...... . ... . ..... . . ... . . . .. . . ......... . ... .. . . . . . . .. ... .. ... ..... . ......... . ..... . ......... ... .............. . . .. . .. ......... . .. . ......... ................................... . .......... .. .. . . .. .. . . . . .. . . . . .. . . . .. .... .. . ... .. . . ............ .. . . . . ......... . . ... . . . . . . . .... . . . .. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . ... ... . . . ..... . . . . . ....... . .................... .. .. .. . ... . . . ........ . .. . . . . . ... . . .. ... . . . .. . .... . . . ... ... . . ..................... . .. ...... .. . .. .. ........ . . .... . ... ...... . . . . . . . .... . . . . . . .. . .. . .... . . . .. .. ..... . ......... . . .. ........... ............... . . ... .. .. . . .. . ... . ... . .. . . ... . . . ...... .... . ........................... . . .. .. . .. . . .. .. . .......... .............. . . . . . .. .. ..... ... . .... . .. . ....... . . . ..... .. ..... . . . . . ... ........ . .. .. ... ... ... .. . ...
lowQualScore : 1111 7 7 4 77777 7 4 4 7 7 99999 1111 7 0000 7 99 000 7 4 33333 7 66 6666 0 0 0 99 0 6666 0 0 0 0 0 99 0 99 0 88 7 000 7 7 4 99 99 7 4 333333 7 777 5 33333 7 7 777 7 7 7 22 7 7 888888888 7 888 88 3 7 7 7 0 7 99 666 99 000 77777 7 777777777 7 77777 7 333333333 777 88888888888888 7 7 22 7 22 888888888 3 22 7 888888888 22222222222222222222222222222222222 0 4444444444 44 88 0 8 66 88 0 2 0 0 88 0 0 0 0 00 0 0 0 00 0000 00 0 000 00 0 0 000000000000 00 0 0 8 0 888888888 6 8 000 8 0 0 3 3 3 3 3333 7 7 0 55 5 5 5 0 5 0 5 5 5 0 5 0 5 5 0 0 0 3 3 3 3 7 3 7 0 7 3 3 3 5 0 0 555 0 333 333 3 3 3 33333 7 7 3 3 7 3333333 3 22222222222222222222 22 00 22 2 555 0 0 2 88888888 8 00 0 2 0 0 0 555 0 0 88 000 2 5 0 88 0 5555 0 0 3 777 777 3 3 000000000000000000000 2 00 222222 22 2 22 00 00000000 2 2 2222 0 555 555555 2 0 0 0 0 8 0 0000 0 0 0 0 0 0 00 4 00 8 8888 0 0 0 22 00 00000 6 444444444 2 0 00 00000000000 222222222222222 0 8 000 00 00 0 0 00 0 000 8 222 7 22 7 7 777 3 7 0 777777 2222 3 888888888888888888888888888 7 7 00 22 2 22 7 7 22 22 7 5555555555 00000000000000 7 2 7 7 7 22 77 77777 333 2 0000 7 99 7 6666666 7 7 7 00000 11 44444 7 7 7 7 0 777 11111111 7 22 22 000 777 777 22 7 777
consensus : ATGTTGTG----GT-CA-T-CGCATA--T-TATT-TAT-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT---TAAA-T--G---A-TTT-GTTG-----AA-TGTG--ATATTTCAT-TT-ACTAACCTTGA-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-AAGA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATA---T-TG-CATGTCCC---AAATGTT--A--TTTTCAATAC-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAA--TA-A---TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-ATAAAA-TG-TTAC--TT-----T---TT-CA--GGTAA-TCT-------TAATC--TTGT-A----------CTT------G-AAA--ATATGTCCTTGCGTNTT-------TACC-GAAAAAGAAAAACCTGTGTAATGAATCAATATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTAT-T-CATG-GAAAATGA-AAG--T-A-T-A--GGC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--AAAA--TT-TCAA-CAAAG-AT--------ATGTAATTATACACT---TCCGTATTTTCTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAATATGATGATAGTCTACCTAAATTGGATATCTAAAATGTTTTTACAGG--GGTAATTTTGTTGGAATGAATTGGCGTGTCCTCGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTCCGCCGCGTGTTACTTTTTTAAAACGTAAACACCATGGGACATTAAAGACAAAACAATGCCGTTATTNTATTATTTATTAGAAATAATATTCATGATTATTGTGATTCCANACTTTTCTTAAGAACNTATGTAANTANATTGAATCAATTTACAGTTTTGTATAATCAGTAAGCATACATTAAAGTCGCGTCTTTTGATTTAAGTAAACACGAA-GGACAATANAGGGTAACATGAAGTACAAAAAGTGTACATT-AATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGAGCGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTNGCAATATGGTTGATCGATATT-CAAAAAGTC---TTTAAAAAAAAA-AATTT-TGCA-GCTTTTGG-----TAACAGCAACGGACTGTAAT-------GGTAACATTAAGGACA--------------------TTTGGAGTTTT-GTTTTTTTTTTN-AATCTAGAT-GCTCTATATTTAATCTA---TGTAG-TTTTTTTG-GTAGTTTTTTC-TG--A-AAATCTAAATGCTCT--ATATATA-ATCTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-A-TAAGTATAGAATTAA-AAAAAA--ACNAT---CCGGAANCATTAAAAAGGATTAGT-CCTTC-C-TGTTACAGCTTTGTCTCTGC-TGTTAC-AG------TG-T-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCATT-ATTGATCA-CTAATGAT-CTCGA----CTT-TTGTTAAATAT----ACT-GCAAATATT---ACTATTTTTCAA-CAT-AGTTGTGA-A-CCATGT-CATT----GT-GTT-ATGTCTTTGTATNTTNAA-AATA-TAGAACAATGTC--ATGT--TCAA---TTTTGC-AAATTT-TGAG-AGAAG--AGTT-----AACTTAGG-------ACGANAA--AAA---GGTCA---TGTAT-T----TAT-----G-TTT---ACA--ACA--TAAGAGCC-TT--TGTAAAA---CGCATA-T-ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TGAAATGAA-----ATATAT----ATCTTCTTTGAT-ATA---AA------TA---AT---------A-TTCAATT-TTATTTAAAG--TAACACCAGGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAA-C--------CTT--GAT-A----T--CTA-CGA-AA-TGG-AACA--ATTTG-TTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCAGTAT--TTAGT-------TAG-ATAA-TCAA-AA--T--AAGATG-AAAAAATTAC--A--ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCC--G-A-AATAA---AGACA---TTTT--TTGAAA---ATGACC
Reference ( family-3707 ) : ATGTTGTG----GT-CA-T-CGCATA--T-TATT-TAT-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT---TAAA-T--G---A-TTT-GTTG-----AA-TGTG--ATATTTCAT-TT-ACTAACCTTGA-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-AAGA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATA---T-TG-CATGTCCC---AAATGTT--A--TTTTCAATAC-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAA--TA-A---TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-ATAAAA-TG-TTAC--TT-----T---TT-CA--GGTAA-TCT-------TAATC--TTGT-A----------CTT------G-AAA--ATATGTCCTTGCGTNTT-------TACC-GAAAAAGAAAAACCTGTGTAATGAATCAATATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTAT-T-CATG-GAAAATGA-AAG--T-A-T-A--GGC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--AAAA--TT-TCAA-CAAAG-AT--------ATGTAATTATACACT---TCCGTATTTTCTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAATATGATGATAGTCTACCTAAATTGGATATCTAAAATGTTTTTACAGG--GGTAATTTTGTTGGAATGAATTGGCGTGTCCTCGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTCCGCCGCGTGTTACTTTTTTAAAACGTAAACACCATGGGACATTAAAGACAAAACAATGCCGTTATTNTATTATTTATTAGAAATAATATTCATGATTATTGTGATTCCANACTTTTCTTAAGAACNTATGTAANTANATTGAATCAATTTACAGTTTTGTATAATCAGTAAGCATACATTAAAGTCGCGTCTTTTGATTTAAGTAAACACGAA-GGACAATANAGGGTAACATGAAGTACAAAAAGTGTACATT-AATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGAGCGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTNGCAATATGGTTGATCGATATT-CAAAAAGTC---TTTAAAAAAAAA-AATTT-TGCA-GCTTTTGG-----TAACAGCAACGGACTGTAAT-------GGTAACATTAAGGACA--------------------TTTGGAGTTTT-GTTTTTTTTTTN-AATCTAGAT-GCTCTATATTTAATCTA---TGTAG-TTTTTTTG-GTAGTTTTTTC-TG--A-AAATCTAAATGCTCT--ATATATA-ATCTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-A-TAAGTATAGAATTAA-AAAAAA--ACNAT---CCGGAANCATTAAAAAGGATTAGT-CCTTC-C-TGTTACAGCTTTGTCTCTGC-TGTTAC-AG------TG-T-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCATT-ATTGATCA-CTAATGAT-CTCGA----CTT-TTGTTAAATAT----ACT-GCAAATATT---ACTATTTTTCAA-CAT-AGTTGTGA-A-CCATGT-CATT----GT-GTT-ATGTCTTTGTATNTTNAA-AATA-TAGAACAATGTC--ATGT--TCAA---TTTTGC-AAATTT-TGAG-AGAAG--AGTT-----AACTTAGG-------ACGANAA--AAA---GGTCA---TGTAT-T----TAT-----G-TTT---ACA--ACA--TAAGAGCC-TT--TGTAAAA---CGCATA-T-ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TGAAATGAA-----ATATAT----ATCTTCTTTGAT-ATA---AA------TA---AT---------A-TTCAATT-TTATTTAAAG--TAACACCAGGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAA-C--------CTT--GAT-A----T--CTA-CGA-AA-TGG-AACA--ATTTG-TTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCAGTAT--TTAGT-------TAG-ATAA-TCAA-AA--T--AAGATG-AAAAAATTAC--A--ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCC--G-A-AATAA---AGACA---TTTT--TTGAAA---ATGACC
gi|1 : ATGTTGTG----GT-CA-T-CGCAT---T-TATT-TAA-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT----AAA-T--G---A-TTG-GTTG-----AA-TGTG--ATATTTCAT-TT-AGTAACCTTGA-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-AAGG-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-TA--TT--TGG-TCAAATATA---T--G-CATGTCCC---AAATGTT--A--TTTTCAATAC-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAAA-TA-A---TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---ACA------T-------TG-TCT-ATAAT--TG-TTAT--TT-----T---TTTCA--GGTAA-TC---------AATC--T---------------------------------ATG---------CTT-------TACA-AAAAAATAAAACACTGTGTA-TGAATCAATATA-TCC-CTTTGCGCACCTCATATCTGCACGTCATCCTGAATAC-TTATGT-CATG-AGAAAT-A-AAG--TGA-T-A--GGCC---GAGGG--AAAGTTA--CTGAAAGGG-TGGATAG----AA---A--AGAAATTT-TCAAACAAAGGAT--------ATTTAATTATACACT---TCCGTATTTTCTGATGTTGTC-CTTAATGT-TACCATCGAAATAAACTATAACAATATGATGATAGTCTACCTAAATTGGATATCT-AAATG-TTTTACAGAGCGGTAATTTTGTTGGAATGAATTGGCGTGTCCTTGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTCCGC--CGTGTTACTTTTTTAAAACGT-AACACCATGGGACATTAAAGACAAAACAATGCCGTTATTTTATTATTTATTAGAAATAA-ATTCATGATTATTGTGATTCCATAC-TTTCTTAAGAACTTATATAACTAGATTGAATCAATTTACAGTTTTGTATAATCAGTAAGCATACATTAAAGTCACGTCTTTTGATTTAAGTAAACACGAACGGACAATACAGGGT-ACATGAAGTAC--AAAGTGTACATT-AATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGA-CGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTTGCAATATGGTTGATCGATATT-C-AAAAGTC---TTTTAAAAAAGA-AATTT-TGCA-GCTTTTGG-----TAACAG-AACGG-CTGTAAT-------GGTAACATTAAGGACA--------------------TTTGGAGTTTT-GGTTTTTTTTAT-AATCTAGAT-GCTCTATTTATAATCTA---TGTAG-TTTTTTTT-GTAGTTTTTTCTTGTTA-AAATC---------------TATA-ATCTATGTG-TG-CTATAAA---AAAT-AT-TATTA--TCAA-TAAGTATAGAATTAA-ATAAAA--ACAATCAACCGGAAACATTAAAAAAGATTAGT-CCTTC-C-TATTACAG-TTTGTCTCTGC-TGTTAC-AG------TGCT-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCCTTAATTGATC--CTTATGA--CTCGA----CTT-TTGTTAAATATACTAACT-GCAA--ATT---ACTA-TTTTCAA-CAT-AGTTGTGA-ATCCATGT-CATT----GT-GTT-ATGTCTTTGTATTTCAAA-AATA-TAGAACAATGTC--ATGT--TC-A---TTTTGC-AAA-TT-TGA--AGAAG--AGTT-----AACTTAGA-------A-GAAAA--AAA---G--TA---TGTA--T----TAT-----GTTTT---ACA--ACA--TAA-AGCCTTT--TGTAAAA---CGCATA---ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TGAAATATA-----ATATAT----ATCTTCTTTGAT-ATA---A--------A---AT---------ATTTCAATT-TTA-TTAAAG--TAACACCAGGGACATA--TTTTTCGA-G--CTGT--AGC-ATGTATAACC--------CTT--GA--A----T---TA-C-A-AA-TGG-AACA--ATTTG-TTTTTT-----GCA-T-TTTTGTCGTT-T--ATTGC-GTAT--TTA-T-------TAG-ATAATTCAACAA--T--AAGATGAAAAAAATTAC-----ATATAAG-GTCA-T-CAT-TT-TTTAAGTTT---A----T--TCAT---TCC--G-A-AATAA---AGACAGTTTTTT--CTG-AA---ATGACC
gi|10 : tatatgggtcgatttcaaaaaatgtctaaA-T-GTCTTTATTTTTG-TA--GCGTAA-T-TTA-TGTCCA-TGAA-TGAA------TATAT----ATCTTCTTTGAT-CTA---AAAA----TG---AT---------A-TTCAATT-TTATT--AAG--TACCACC-GGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAA----------CTT--GATAA----T--CTA-CGA-TA-TGG-AACA--ATTTGTTTTTTT-----GCA-T-TTTTGTTGTT-TA-ATTGCAATAT--TTAGT-------TAG-ATAA-TCAA-AA--TA-AAGATG----AAATTA---A--ATATAAGCGTCA-T-CA--TT-TTTG---TT---A----T-cat
gi|11 : aaaaATGTTGTG----GT-CA-T-CGCA-A--T-TATT-TAA-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT----AAA-T--G---A-TTT-GTTG-----AA-TGTG--ATATTTCAT-TT-AGTAACCTTGA-CA-TA-AT--GGA-AA-CACAT----TAC-A-ACGATTG-T-AAGA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATA-----TG-CATGTCCC---AAATGT------TTTTCAATAC-A-T---T
gi|12 : tgggtcgatttcaaaaaatgtctaaATGTTGTG----GC-CAAT-C-CAT---T-TATT-TATCTAAC-CAACTTA-TAGTTG--T-AAAC----GT-TTT----AAA-TTGG---A-TTT-GTTGTCGATAA-TGTG--ATATTTCAT-T---CTAAACCTGA-CA-TA-AT--GGATAAACACAT--------A-ACGATTGCT-AAGAGA-TT-AATA--T-TTTTTA-ACAA---TTCAT-ATG-CCAA--TT--TGG-TCAAATATA---T-TG-C-TGTC
gi|13 : tatatggtcgatttcaaaaaatgtctaaAAG-TC-GAAA-ATATG--C-AGGAA-AAAA--TA-A---TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGTAACAAA------TTTTACTATGTTCT-AT-AAA-TG-TAAA--TT-----TCTATT-CA--GATAA-ATC-------TAATCG-TTGT-A----------CTT------GAAAA--ATATGTCC
gi|14 : TCAATTTACAGTTTTTTATAATCAGTAAGCATACATTAAAGTCGCATCTTTTGATTTAAGTAA-CACGAA-GGACAATAAAGGGTAACATGAAGTGCAAAAAGTGTACATT-AATCGATTTTATCCAA
gi|15 : --------------------TTTGGAGTTTTGGTTTTTTTTTTA-AATCTAAA--GCTCTATATTTAATCTA---TGTAGCTTTTTTTG-GTAGTTTTTTTATG--A-AAATCTAAATGCTCT--ATATATA-ACCTATGT
gi|16 : TTTTTT--------AAATCTAAATGCTCT--ATATATA-ATGTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-ACTAAGTATTGGATTAATAAAAAA--ACCAT---CCGAAAACATTAAAAAG
gi|17 : TAT--TTAGT-------TAG-ATAA-TCAA-AAATC--AAGATG-AAAAAGATAC--A--ATATAAGCGTCATT-CATCTT-TTTG---TCGGGA----TAATC-TA--TAC--GAA-AATAA---AGACA---TTTT--TTGAAA---
gi|18 : CTATACCAATATGATGATAGTCTACCTAAACTGGATATCTAAAATGTTTTTACA-G--GGTAATTTTATTGAAATGAATTGGCGTGTCCTCGACAGACGCCAC
gi|19 : CTAACCTTGA-CA-TG-AT--GGA-AAACACATTATGTAC-A-ACGATTG-T-AAGA-A-CT-AATA--T-TTT--
gi|2 : ATGTTGTG----GC-CA-TGCGCATAAATATATT-TAT-TAGC-TAACT-A-TATTT-----AAAC----GT-TTT---TAAA-T--G---AATTT-GTTG-----GA-TGTG--ATATTTCAT-TT-ACTAACCTT-A-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-A-GA-A-TT-AATA--T-TTT--G-ACAA---TTAAT-ATG-C-AA--TT--TGG-TCAAATATA---T-TG-CATGTCCC---AAATGTT--A--TTTTCAATAA-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AGAA--TA-A---TA-TTTCAT-T-A--TGTAAAAC---A-TTATTTGAAAAG-AT-CTG-AAAT--AAAA---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-ATAAA--TG-TTAC--AT-----T---TT-CA--GGTAA-TCT-------TAATC--TTG--A----------CTT------G-AAA--ATATGTCCTT-CGTGTT-------TACC-CAAAAAGAAAT-TCTGTGTAATGAATCA-TATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTAT-TTCATG-GGAAATGA-AAG--T-AGT-A--GG-----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--AAAA--TT-TTAA-CAAAG-AT--------ATG-AATTATACACT---TCCGTATTT-CTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAGTATGATGATAGTCTACCTAAATTGGA-ATCTAA--TGTTTTTACAGG--GGTAATTTTGTTGGAATGAATTG-CGTGTCCTAGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTC-GCCGCGTGTTACTTTTT-AAAACGTAAACACC-TGG-ACATTAAAGACAAA-CAATGCCGTTATTGTATTATTTAT-AGAA-TAATATTCATGATTATT-TGAT-CCAAACTTTTCTTAAGA-CGTATGTAAATATATTGAATCAATT-ACAGTGTTGTATAATCAGTA-GCA-ATATTAA-GTCACGTCTTTTGATTTAAGTATACACGAAAGGACAATAGAGG-TAACATGAAGTACAAAAAGTGTACATTTAATCGATTTTATCCAACTGAATATTTCAATATTTT-CAATACAGATGGAGCGTAATT-GATATAATTGTTGCAAATAGTTATAAATA---ATTAACAATATAGTTGATCGATATT--AAAAAGTC---TTTAAAAAAAAAGAAATT-TGCA-GCTTTTGG-----TAACAGCA-CGGACTGTAAT-------GGTA-CATTAAGGACA--------------------TTTGGATTTTT-TTTTTTTTTTTA-AATTTAGAT-GCTCTATATTTAATCTA---TGTAG-GTTCTTTG-GTAGATTTTTC-----A-AAATCTAAATGCTCC--ATATATA-ATTTATGTG-TG-CTAT-AA---AAAT-AT-TATCA--TC-A-TAAGTATAGAATTAA-AAAAAA--ATAAC---CCGGAACAATTAAAAAG-ATTAGT-CCTTC-C-TGTTACAGTTTTGTCTCTGC-TGTTAC-AG------TG-T-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCATT-ATTGATCA-CTAATGAT-CTCGA----CTT-TTGTTAAATAT----ACT-GCAGATATT---ACTATTTTTCAACCAT-AGTTGTGA-A-CCATGT-CATT----GT-GTT-ATGTCTTTGTATATTCAA-AATA-TAGAACAATGTC--ATGT--TCAA----TTTGC-AAATTT-TGA--AGAAG--AGTT-----AACTTA-G-------ACGAAAA--AAA---AGTCA---TATAT-T----TAT-----G-TTT---ACA--ACA--TAA-AGCC-TT--TGTAGAA---CGCATA---ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TAAAATG-A-----TTATAT----ATCTTCTTTTAT-ATA---AA------TA---AT---------A-TTCAATT-TTATTTAAAG--TAACACCAGGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAA-C--------CTT--GAT-A----T--CTA-CGA-AA-TGG-AACA--ATTT--TTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCAGTAT--TTAGT-------TAG-ATAA-TCAA-AA--T--AAGATG-AAAAAATTAC--A--ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCC--G-G-AAT-A---AGACA---ATTT--TGGAAA---AGGACC
gi|20 : T-TTTAG--TT---A----T-ATCATA--TCC--G-A-AATAA---AGATA---TTTT--TTGAAA---ATGACC
gi|3 : GATATCACAAAAAGTCCTGTTTAAAGAAAAA-CGTTTCTGAAAGTTTTTGGGTCCATAA--GCAACAGACT--AATTATTCCAGGTAACATAACGGACAGTTAGGATTTTTCGGTGTTTCTTGGGGTTTT-ATTTTTTTTTTTTAATCTAAATCGCTCTATATTTA-TCTACCTTGTAG-TTTTTTGGCGT-GTTTTATC-TG--TTAGATCTAAATGCTCTCCATATATATAT-TATGTGGTGTCTAT-AACAAAAATCATGTATTAAATC-A-TAAGT-CA-AATCAG-GAAAAATCACCA-----CGAAATCATTAAAAGGAATTAGTTCCTTCACATGTTAC--CCCTGTCTTAGCATGTTCCTAGATTCTCTG-TTTGAATTGCTGGTCCCTCCTGTTACTCGTCAAGAGTAT--AAAAATA---AGATATCAA--AT--ATCAGCTAATAGCACTCGAGGCTCTCGTTGTTAAA-AT----GCTTGCAAATATTTGAA--ATTTTTCAA-CATTAGTTATGA-A-CCATAC-CATT----GT-GTTTATGTCTTTGCATTTTGAA-AATA-TAGAA-AATGTT--AAGT--TCAAA--TTTTGC-AAATTT-TGAA-AGAAG--AGTT-----AAACTAGAT------ACGATGA--AAA---GATCAATATATAT-TGTACTAT-----G-T------CA--CCA--TAAGAGCC-TT--T-TGAAA---CGCATAAC-ATTTCTATAATTG-TATGGCGTAA-TAT-AATTTC-AATGAAATGAATATTAATAGAT----ATCTTCTTTGAT-ATA---AAATAATATA---ATTTTTTTATTA-TTCAGTT-TTATT-AAAG--TAACACCAGGGACACA--CTTTCC-A-G--CTGT--AGC-ATGTATAATC--------CTTCAGAT-A----T--CTA-CGA-AA-TGG-AACA--ATTTG-TTTTTT-----GCATT-TT-TGTTGTT-T--ATTGCAGTAT--TTAAT-------TAG-ATAA-TCAA-AT--TA-AAAATG-AAAAAATTAC--A--A-ATAAGCGTCA-T-CAT-TT-TTca
gi|4 : aatgcaaaaatagattagctcaTTGTG----AT-CA-TTCGTATA--T-TATTATAT-------AA-T-A-CATT--------AC----GT-TTT---TAAA-T--G---A-TTTGGTTG-----AA-TGTGA-ATATTCCATAAA-ACTAACCTTGA-CACTGCAT--GG--ATACACAT----TAC-ATACGATTG-T-AAGA-AGCT-AATA--T-TTT--GAACAAATTTCCATCATG-CGGA--TT--TTG-TTCAATATA---C-TGCCATGTCCC---AAAT-TT--ATTTTTTCATTACTA-T---CGAGTTC-GAAA-ATATG--CTAAGAA-AAAA--AA-AACGTC-TTTCAT-TCAATTGTAAAGC-ATA-TT-CTTTAAAAG-A
gi|4 : tatatggcgtcgatttcaaaatgtctaaatG-GAAT--AAAGCG-GA--T---GG--C-TGACAG-C-T---------TCAA-CA-----AA-TTC--------TGT---AAT------T-------GG-TCT-TTAAA--TG-TT-C--TTCTTTCT---TT-CA--CATAA-TCT--------AATC--GTGT-AA---------CTT------G-AAACAATATGTCCTTGCATTGT-------TACA-GAAAAAGAAAAATCGTTGTATTGA-TCAATATAATCCTCTTTGTGCACCTCATATCTG-ACGTCATC-TGAATA-ATTAT-T-CATG-GAAATTGACAAG--T-A-T-ACTGCC----GAGGGACAAAGATCACCTGAA--GGATG-ATAGAGAAAG---A--AAAA--TTCTCAA-CAAAG-AT--------ATG-A--TATAAACTACATTCGTATATTCTGATGTTGTCTTTTAATGTATACCTATaatgtctagtttaaaagttactagcccttttgtgcaactgggaataaagcggatggctgacagcttcaacaaattctgtaattggtctttaaatgttcttctttctttcacataatctaatcgtgtaacttgaaacaatatgtccttgcattgttacagaaaaagaaaaatcgttgtattgatcaatataatcctctttgtgcacctcatatctgacgtcatctgaataattattcatggaaattgacaagtatactgccgagggacaaagatcacctgaaggatgatagagaaagaaaaattctcaacaaagatatgatataaactacattcgtatattctgatgttgtcttttaatgtatacctat
gi|5 : tatatggcgtcgatttcaaaatgtctaaatttgtgatcattcgtatattattatataatacattacgtttttaaatgatttggttgaatgtgaatattccataaaactaaccttgacactgcatggatacacattacatacgattgtaagaagctaatattttgaacaaatttccatcatgcggattttgttcaatatactgccatgtcccaaatttattttttcattactatcgagttcgaaaatatgctaagaaaaaaaaaacgtctttcattcaattgtaaagcatattctttaaaagaaatgtctagtttaaaagttactagcccttttgtgcaactgATGTTGTGCCCCGT-CA-T-CGCAT---T-TATT-TATATACCCTAACT-A-TATTTCCTT-AAACACCCGT-TTTAGCTAAACT--GCCCA-TTTTGTTG-----AA-TGTACTATATTTCAT-TTTACTCACCTTGA-C--TA-ATTGGAA-AAACAC-T----TAC-A-ACGATTG-CCAAGA-A-TTGAATACCT-TTTAAG-ACAA---TTC-T-ATGGC-GAATTT--TGG-TCAAATAAA---TATG-CATGTTCTCAAAAATGGT--A--ATTT--ATAC-A-TACATAAG-TCAGAAA-ATATGAAC-AAGAA-AAAA--AA-A---TAATTTCAT-T-AA-TGTAAAACTATA-TT-TTTGAAAAG-ATTCTG-AAATCTAAAGCCCGG--TCAAG---TGTGACAGGCAT---------TCAAACA-----AAATT---------TGT---AAA------T-------TG-TCT-ATAAAA-TGATTAC--TT-----T---TTGCA--AGTAAATCT-------AAATCCGTTGTTA----------CTT------G-AAA---TATGTCCTTTCGTG-T-------TACCAAAAAAAGAATAACCTGTGTAATGAATCAA-AT--TCC-CTTTG-GCACCTCATATCTG-ACGTCATC-TGAATA-ATTAT-T-CATGCGAAAATGA-AAGGTT-A-TAA--GGCGCAAGAGGG--AAAG-T---ATGAA--GG-TG-ATAG----AAAAGA--AAAA--TT-TCAA-C-AAG-AT---------TGTAATTATACACT---TCCGTATTTTCTCATGT
gi|6 : gaatcgatttcaaaaatgtcctaaTTGTGA-A-GC-TGTTCATTCGTGGTTGTT-GTTTCTATGTATATTCAAGAATAGTAGAACAATGTCCGATGTATCCAAGCTTTTTGCTAGATCTGTGAG-AGAAG--AGTTGGTGCACCTTAGGGTTATTTAC-AGAACCAAACTTAGTCA---GGTATAT----TATCGTTGG-TTTGGGACATTACA--TAAGAGCC-TTGTTGAAAAAATTCGCATA-TTATTTTTATAATTGCTA--GCGTAAAT-T-A-TGTCGA-TGAAATGAA-----AGATATGATGATCTTCTTTGATTATATGGAA------CATAAAT---------A-TTCAATTGCTATT--AAGCTTAACACCAGGGACA-AGTTTTTTC-ATGCCCTATTGAGCTATGCATAA-TATGGGTTACTT--G-T-AAGGGT--CTATCAATAACTGGTAACACCATTTG-TTTTTTTTGGGGCATTATTGTGTTGTTGTGAATTTTGGCATTGTTGGTTGATTCCTAGAATAA-TCAA-AT--A--AAGATG-AAGAAATTACTTT--ATAAAAGCGTCA-TCCAT-TTCTTTA---TT---A----T-ATCATACGTTC--G-ATAATAACTGAG-CA---TTTTTGTTGAAACCCATGACC
gi|7 : TCCTTACCCTTACTTGTCAGTTATATT----AATTTTTA--TGTGATT-ATTGATCA-CTAACGAT-CTTGA-----TA-TTGT-ACATGT----ATT-GCAAAT--T---ATAATTCTTTAA-CAT-AGTTACAATA-TTACAT-CAGT----GT-CTA-ATATCTTTGGATGTCTTA-AATG-GAGAACAATGTA--AAAC--TTAA---TTTTGC-AATATA-TGAGTAGAAGCTAGGT-----A---TAT--------ATGACAA--AAA---GCATA---TGCAC-T------------G-TTT---GTA--GCAAATAATTTCT-TT--CCTATTC---TTCA-A-T-ATTTCTATTATT---A--GCATAT-T-T-T-TGCC-A-AAAAA-GGA-----GTAAAT----ATTTTGTTTGATCAAA---AA------TT---AT---------A-TCTAATT-TAGTATGA----TGACACCAAAGACACA--TGTTTC-A-G--CTGT--AAT-ATGTA-AA-C--------TCT--TTT-A----TTGCTA-TTA-AA-TGG-GTCA--ATTCA-TTTATT-----GCATA-TTTGATT-TT-C--GTCGCAGT-T--TGAAT-------TAG-TTCG-TCAA-AA--TTAAACATG-CTAAAAGTCC--AATATATAAGACTTA-T-GAT-TT-TGTT---TT---ACCTCT-ATCATA--TTCTTG------AG---AAACA---TATT--TTGGAA---ATGACca
gi|8 : TA-AAAT--AACGA--GG--T---GATAT-TGACAG-CATCCAAGAGTCTCAA-CATTGTCAA-TTAAATAAAAATGT---GAAATTAGTT-------TG-TCTTATAAAACTG-TTACATTT-----C---TT-CATAGGTAA-TCTGTTTCTCTAATCC-TTGT-ATGCCTAATTACTTCGATAAG-AGAT-ATGTGTCCTTGCGTATGGGGAGGATACC--AAAAAGAAAA-CCTGTGTAATGAATCAATATA-GCC-CTTTGCGCATCTCATATCTG-ACGTCATC-TGAATACATTAT-T-CATG-GAAAATGA-AAG--T-A-T-A--GGC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---AAGAAAA--TT-TCAA-CAAAG-ATATGTACAAATGTAATTATACACT---TCCATATTTTCCGATGTTGTC-CTCAATGT-TACCAATGAAATAAACTATACCAATAtcatata
gi|9 : ctatgtataagatcatgatgaaatgtgattaTTCTG----GTGCA-T-CGTATC--TCTATT-TAT-TAACCTAATT-AATACTT---TGAAAC----ACGTTT---TAAA-T--G---A-TTT-GTTG-----AAATGTG--ATATTCCAT-TA-ACTA-CCTTGAACA-TG-AT--GGA-AAACACAT----TACAA-ACGATTG-T-AAGA-A----ACTA--TATTT--G-AGAA---TTCAT-ATG-C-GA--TTCGTGGATC-AATATACCGT-GG-CATGTCCA---TAATTTTAAA--TTTTCATTAC-ACT---TAAC-TT-GAAAGATATG--C-AAGAATAAAATTTATA---TC-TTTCATCC-A--TGTAACACTATACTT-CTTGAAAAGAAT-CTGAAAAT--AAAC---GGAAT---G---C-TGA
blockSeqs : CCCC G A G AAATA A C C T A CCTT ACCC G AGCT C TG CCC A G TCGAT A CT AAA A C C TG T TATG A T C C G GC G CC A TT A ATT C G C AT CG A A CCGTG C CAA G ATT T C ACA T A G AA T T AAAACG A TC AT T C A A T A CT CCC AA CAA ATAT G CCAAGAGTC A TTGTC A AAATAAAAA AAC TTTTACTA T T AC A AT CTTTCT G TA A TGTTTCTCT CTTGTATGCCTAATTACTTCGATAAGAGATA G ATGGGGAGGA AA AT A AT AA T C . . CA . T C C GT . G A CT GCAA AC A CAC . A . AGAAAGA . C . . ATGTACAAA T ACA T A T A A T GG G C . CG . A . . . G . . T . . A T . G A T T A T A A A A G A A T . G . . A ACA CTG G C A GTCCA C C A A G TATTCCA A GTTAGGATTTTTCGGTGTTT GG TT TC A CCT C C A TATGA CC T C G T . CAA C G AA AC A G T TC C T A A T ACA AGT A T ATTCTCTGTTTGAATTGCTG A TG TTTA T T AG CA GGCTCTCG T T . T ATA TGAA T C T T . T CGTG T T A C G G CG T AT GCTT T T G GT CT GGTGC A GGGTTATTT C A CC GATCAATA TATTATCGTTG . GGG TT AA G . GT G ATT AC C TG A A TA C A A TATTAA GATG T AAATAATATAATTTTTTTATT . G TA CT T GT . T CC TG T TATGGGTTA GTAAGGGT T G T C T CC GT TTGGG TTA T GTGA A TG G TGATTCC A . . ATC A TTT T C C C G ACCTC A CG TT AA CTG . TG A CCC
blockSeqs : . . . T CTC . A C . . GT . . T . . . . T . . A TTT . . . . . . . . . . . T . . . AA . . . . G . . . A TAT . . G AAA . . . . . . . . . TTTATA . CC A T . . . . . . CG . . GC . . . . . C . ATTAGTT . . A . . TCTA . . . CT GTGTAACTTGAAACAA T GTT C AC T AT A . T . . CA . . . . . . . . . . . A . . . . AAAAGA . . . . A T . . . . A . T G . A . . . . . . G . A A . A . . . . . . C . A . . . . T A T A . . . A CTGTT . . G . . . . . . . A A G . . A C C . . C C . . TGT G T AGA T T A T CTT T T . . ATA ACT T . . . . . . . . T G . . . A . AT . T . A . . A GAT C T . CTTAGTCA TTGTACTAT . . . . G . . G . TT . . . . AA G . A T . C TGGAACATAAAT . . TG . T . . . . . . TC CAGATAT . G . . . . G . TT T TA A . G . . . . TTA A AAT . . . . . GGGA . . . AT . . . A .
blockSeqs : . . . . AT . . . . . TG . . T . . . . . . . . TT . . . . . . . . . . . T . . . . . . . . . . . . A TT . . G A . . . . . . . . . TAA . T . T . . . . . . A . . TG . . . . . . . T . . A . . T . . . TT GTTGTACTTGAAAAA G TGT G T A T A . C . . A . . . . . . . . . . . A . . . . AAAAG . . . . A . . . . . A A . . . . . . CA . . T . . . . . . . A . . . . C . T T . A . . A T TA . . . . AT ATA T . . . . . . . . A C . . . T . T . T . G . . C G C G . AGTCA TTTAT . . . . T . . C . T . . . . A . . A A . . AAAATGAT . . A . C . . . . . . C TTTATTG . G . . . . G . TT G T A . G . . . . TA A A . . . . . A . . . G . . . A .
blockSeqs : . . . . AT . . . . . T . . T . . . . . . . . TT . . . . . . . . . . . C . . . . . . . . . . . . C TT . . T A . . . . . . . . . TAA . T . . . . . . . . . . . T . . . . . . . T . . . . . T . . . TA CGTTGTTACTTGAAA . GT . C A A . . . . . A . . . . . . . . . . . . . . . . AAA . . . . . . . . . . . . . . . . . G T . . . A . . . A . . . . . T T C . GCATA CT . . . . . . . . . T . . . . A . . G G . . AATAAT . . . . C . . . . . . C GATAAT . A . . . . A . TA T T G . A . . . . TA A A . . . . . A . . . A . . . A .
blockSeqs : . . . . T . . . . . . . . . . . . . . . . . TA . . . . . . . . . . . T . . . . . . . . . . . . A CT . . . . . . . . . . . . . AAA . T . . . . . . . . . . T . . . . . . . T . . . . . C . . . T TTGACTTGAAAA . . . . . T . . . . . . AATTAT . . . . . . . . . . . . GATAT . T . . . . . . T . C A . G . . . . T C A . . . . . A . . . . . . . G .
blockSeqs : . . . . T . . . . . . . . . . . . . . . . . T . . . . . . . . . . . T . . . . . . . . . . . . . T . . . . . . C . A . . . . A . A . . . . . A .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqCons : AT*** T**** T*** TT**** A**** TAA****** A* TT******* GTTGTACTTGAAAA********************* C* **** *** ** ** C******* GT** G* GT******* GNTCA****** TTTAT********** T** AAATAAT******************** C********* GATAAT******** TT* TA*** A* A**** *** A** ***
originalCons : ATGTTGTG----GT-CA-T-CGCATA--T-TATT-TAT-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT---TAAA-T--G---A-TTT-GTTG-----AA-TGTG--ATATTTCAT-TT-ACTAACCTTGA-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-AAGA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATA---T-TG-CATGTCCC---AAATGTT--A--TTTTCAATAC-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAA--TA-A---TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-ATAAAA-TG-TTAC--TT-----T---TT-CA--GGTAA-TCT-------TAATC--TTGT-A----------CTT------G-AAA--ATATGTCCTTGCGTNTT-------TACC-GAAAAAGAAAAACCTGTGTAATGAATCAATATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTAT-T-CATG-GAAAATGA-AAG--T-A-T-A--GGC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--AAAA--TT-TCAA-CAAAG-AT--------ATGTAATTATACACT---TCCGTATTTTCTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAATATGATGATAGTCTACCTAAATTGGATATCTAAAATGTTTTTACAGG--GGTAATTTTGTTGGAATGAATTGGCGTGTCCTCGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTCCGCCGCGTGTTACTTTTTTAAAACGTAAACACCATGGGACATTAAAGACAAAACAATGCCGTTATTNTATTATTTATTAGAAATAATATTCATGATTATTGTGATTCCANACTTTTCTTAAGAACNTATGTAANTANATTGAATCAATTTACAGTTTTGTATAATCAGTAAGCATACATTAAAGTCGCGTCTTTTGATTTAAGTAAACACGAA-GGACAATANAGGGTAACATGAAGTACAAAAAGTGTACATT-AATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGAGCGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTNGCAATATGGTTGATCGATATT-CAAAAAGTC---TTTAAAAAAAAA-AATTT-TGCA-GCTTTTGG-----TAACAGCAACGGACTGTAAT-------GGTAACATTAAGGACA--------------------TTTGGAGTTTT-GTTTTTTTTTTN-AATCTAGAT-GCTCTATATTTAATCTA---TGTAG-TTTTTTTG-GTAGTTTTTTC-TG--A-AAATCTAAATGCTCT--ATATATA-ATCTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-A-TAAGTATAGAATTAA-AAAAAA--ACNAT---CCGGAANCATTAAAAAGGATTAGT-CCTTC-C-TGTTACAGCTTTGTCTCTGC-TGTTAC-AG------TG-T-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCATT-ATTGATCA-CTAATGAT-CTCGA----CTT-TTGTTAAATAT----ACT-GCAAATATT---ACTATTTTTCAA-CAT-AGTTGTGA-A-CCATGT-CATT----GT-GTT-ATGTCTTTGTATNTTNAA-AATA-TAGAACAATGTC--ATGT--TCAA---TTTTGC-AAATTT-TGAG-AGAAG--AGTT-----AACTTAGG-------ACGANAA--AAA---GGTCA---TGTAT-T----TAT-----G-TTT---ACA--ACA--TAAGAGCC-TT--TGTAAAA---CGCATA-T-ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TGAAATGAA-----ATATAT----ATCTTCTTTGAT-ATA---AA------TA---AT---------A-TTCAATT-TTATTTAAAG--TAACACCAGGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAA-C--------CTT--GAT-A----T--CTA-CGA-AA-TGG-AACA--ATTTG-TTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCAGTAT--TTAGT-------TAG-ATAA-TCAA-AA--T--AAGATG-AAAAAATTAC--A--ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCC--G-A-AATAA---AGACA---TTTT--TTGAAA---ATGACC
finalCons : ATGTTGTG----GT-CA-T-CGCATAT---TATT-TAT-TAAC-TAACT-A-TATTTT----AAAC----GT-TTTT---AAA-T--G---A-TTT-GTTG-----AA-TGTG--ATATTTCAT-TT-ACTAACCTTGA-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-AAGA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATATT----G-CATGTCCC---AAATGTTA----TTTTCAATAC-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAATAA------TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-ATAAAA-TG-TTAC--TT-----T---TT-CA--GGTAA-TCTT-------AATCGTTGTACTTGAAAA---------------------TATGTCCTTGCGTNTT-------TACC-GAAAAAGAAAAC-CTGTGTAATGAATCAATATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTAT-T-CATG-GAAAATGA-AAG--T-A-T-A--GGC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--AAAA--TT-TCAA-CAAAG-AT--------ATGTAATTATACACT---TCCGTATTTTCTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAATATGATGATAGTCTACCTAAATTGGATATCTAAAATGTTTTTACAGG--GGTAATTTTGTTGGAATGAATTGGCGTGTCCTCGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTCCGCCGCGTGTTACTTTTTTAAAACGTAAACACCATGGGACATTAAAGACAAAACAATGCCGTTATTNTATTATTTATTAGAAATAATATTCATGATTATTGTGATTCCANACTTTTCTTAAGAACNTATGTAANTANATTGAATCAATTTACAGTTTTGTATAATCAGTAAGCATACATTAAAGTCGCGTCTTTTGATTTAAGTAAACACGAA-GGACAATANAGGGTAACATGAAGTACAAAAAGTGTACATT-AATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGAGCGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTNGCAATATGGTTGATCGATATT-CAAAAAGTC---TTTAAAAAAAAA-AATTT-TGCA-GCTTTTGG-----TAACAGCAACGGACTGTAAT-------GGTAACATTAAGGACA--------------------TTTGGAGTTTT-GTTTTTTTTTTN-AATCTAGAT-GCTCTATATTTAATCTA---TGTAG-TTTTTTTG-GTAGTTTTTTC-------AAATCTAAATGCTCT--ATATATA-ATCTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-A-TAAGTATAGAATTAA-AAAAAA--ACNAT---CCGGAANCATTAAAAAGGATTAGT-CCTTC-C-TGTTACAGCTTTGTCTCTGC-TGTTAC-AG------TG-T-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCATT-ATTGATCA-CTAATGAT-CTCGA----CTT-TTGTTAAATAT----ACT-GCAAATATT---ACTATTTTTCAA-CAT-AGTTGTGA-A-CCATGT-CATT----GT-GTT-ATGTCTTTGTATNTTNAA-AATA-TAGAACAATGTC--ATGT--TCAAGT--TTTGC-AAATTT-TGAG-AGAAG--AGTT-----AACTTAGT-------ACGANAA--AAAGNTCA------TGTATTTAT----------G-TTT---ACA--ACA--TAAGAGCC-TT--TGTAAAA---CGCATAT--ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TGAAATGAA-----ATATAT----ATCTTCTTTGAT-ATAAAATAAT--------------------A-TTCAATT-TTATTTAAAG--TAACACCAGGGACATA--TTTTTC-A-G--CTGT--AGC-ATGTATAAC---------CTTGATAAT--------CTA-CGA-AA-TGG-AACA--ATTTG-TTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCAGTAT--TTAGT-------TAG-ATAA-TCAA-AATA---AAGATGA-AAAAATTACA----ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCC--GA--AATAA---AGACA---TTTT--TTGAAA---ATGACC
Alignments
lowQualScore : 1111 1 22222 1 1 22222 1111 2222 111 1 11111 11 1111 1111 11 111 1 111111 111 11111 111 111111111 11 222 111 11111 222222222 11111 333333333 111 33333333333333 22 222222222 1 333333333 66666666666666666666666666666666666 1 22222222 1 11 11 11 2222 11 222 11 111111111111 11 222222222 1 111 1 1 2222 1 11 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 222 222 222 1 1 1 33333 4444444 88888888888888888888 11 11 11 111 1 1 4444 11 1 1 1 111 1 1 11 111 1 11 2222 1 111 111 1 1 888888888888888888888 11 222222 11 11 11 22222222 2222 1 111111 1 1 1111 11 11 3333 22 11 22222 44444444 11 22222222222 333333333333333 111 11 11 1 11 111 222 1 222222 1111 1111111 33333333333333 11 44444444444444444444444444 11111 1111 1111111 11 11111 111 11111111 111 111 111 111
lowQualScore : 2222 5 5 1 55555 5 1 1 5 5 22222 2222 5 2222 5 77 000 5 1 44444 5 33 1111 5 5 5 66 5 0000 5 5 5 5 5 55 5 66 5 33 5 000 5 5 1 77 77 5 1 777777 5 111 2 33333 6 6 111 6 6 6 99 6 6 555555555 6 666 55 7 6 6 6 8 5 77 333 77 000 66666 6 666666666 6 66666 6 333333333 111 11111111111111 6 6 22 6 99 111111111 3 99 6 000000000 11111111111111111111111111111111111 0 1 66666666 1 8 8 8 8 6 0 11 88 8 3 8 8 00 8 8 8 8 11 8 8 8 11 5555 11 6 222 11 8 8 888888888888 11 8 8 0 8 999999999 0 0 444 0 0 0 7 7 7 7 0000 6 3 5 77 5 5 5 5 5 1 5 5 5 5 5 1 5 5 1 1 1 7 7 7 7 0 7 6 1 6 7 7 3 5 5 5 111 1 777 333 3 3 3 33333 6 6 7 7 6 3333333 7 11111111111111111111 00 11 33 3 777 0 0 3 2222 0 11 8 8 0 0 0 777 0 0 33 111 3 2 0 33 1 4444 1 6 3 666 777 3 3 777777777777777777777 1 22 222222 33 3 33 77 66666666 3 3 1111 0 333 888888 3 0 0 8 8 0 8 7777 8 8 1 1 8 8 11 1 11 0000 8 6 8 11 11 00000 5 44444444 1 11 00000000000 222222222222222 8 0 444 11 11 5 8 11 5 444 0 333 6 99 6 6 888 3 6 6 222222 4444 1111111 6 6 6 6 99999999999999 6 77 99 99 6 6 99 99 6 55555555555555555555555555 6 5 6 6 6 99 77 66666 999 3 6666 1 77 1 8888888 5 5 5 33 8 77 77777 0 5 5 5 5 555 33333333 5 99 99 555 111 111 99 1 111
lowQualScore : .... . . . ..... . . . . . ..... .... . .... . .. ... . . ..... . .. .... . . . .. . .... . . . . . .. . .. . .. . ... . . . .. .. . . ...... . ... . ..... . . ... . . . .. . . ......... . ... .. . . . . . . .. ... .. ... ..... . ......... . ..... . ......... ... .............. . . .. . .. ......... . .. . ......... ................................... . . ........ . . . . . . . .. .. . . . . .. . . . . .. . . . .. .... .. . ... .. . . ............ .. . . . . ......... . . ... . . . . . . . .... . . . .. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ... . ... ... . . . ..... . . . . . ....... . .................... .. .. .. . ... . . . .... . .. . . . . . ... . . .. ... . . . .. . .... . . . ... ... . . ..................... . .. ...... .. . .. .. ........ . . .... . ... ...... . . . . . . . .... . . . . . . .. . .. .... . . . .. .. ..... . ........ . .. ........... ............... . . ... .. .. . . .. . ... . ... . .. . . ... . . . ...... .... ....... . . . . .............. . .. .. .. . . .. .. . .......................... . . . . . .. .. ..... ... . .... . .. . ....... . . . .. . .. ..... . . . . . ... ........ . .. .. ... ... ... .. . ...
lowQualScore : 1111 7 7 4 77777 7 4 4 7 7 99999 1111 7 0000 7 99 000 7 4 33333 7 66 6666 0 0 0 99 0 6666 0 0 0 0 0 99 0 99 0 88 7 000 7 7 4 99 99 7 4 333333 7 777 5 33333 7 7 777 7 7 7 22 7 7 888888888 7 888 88 3 7 7 7 0 7 99 666 99 000 77777 7 777777777 7 77777 7 333333333 777 88888888888888 7 7 22 7 22 888888888 3 22 7 888888888 22222222222222222222222222222222222 0 0 88888888 4 0 0 0 0 0 8 66 88 0 2 0 0 88 0 0 0 0 00 0 0 0 00 0000 00 0 000 00 0 0 000000000000 00 0 0 8 0 888888888 6 8 000 8 0 0 3 3 3 3 3333 7 7 0 55 5 5 5 0 5 0 5 5 5 0 5 0 5 5 0 0 0 3 3 3 3 7 3 7 0 7 3 3 3 5 0 0 555 0 333 333 3 3 3 33333 7 7 3 3 7 3333333 3 22222222222222222222 22 00 22 2 555 0 0 2 0000 8 00 0 2 0 0 0 555 0 0 88 000 2 5 0 88 0 5555 0 5 3 777 777 3 3 000000000000000000000 2 00 222222 22 2 22 00 00000000 2 2 2222 0 555 555555 2 0 0 0 0 8 0 0000 0 0 0 0 0 0 00 4 00 0000 0 0 0 22 00 00000 6 66666666 0 00 66666666666 222222222222222 0 8 000 00 00 0 0 00 0 000 8 222 7 22 7 7 777 3 7 0 777777 2222 8888888 7 7 0 7 22222222222222 7 00 22 22 7 7 22 22 7 55555555555555555555555555 7 2 7 7 7 22 77 77777 333 2 0000 7 99 7 6666666 7 7 7 11 4 11 44444 7 7 7 7 0 777 11111111 7 22 22 000 777 777 22 7 777
consensus : ATGTTGTG----GT-CA-T-CGCATA--T-TATT-TAT-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT---TAAA-T--G---A-TTT-GTTG-----AA-TGTG--ATATTTCAT-TT-ACTAACCTTGA-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-AAGA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATA---T-TG-CATGTCCC---AAATGTT--A--TTTTCAATAC-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAA--TA-A---TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-ATAAAA-TG-TTAC--TT-----T---TT-CA--GGTAA-TCT-------TAATC-GTTGT-A----------CTT------G-AAA--ATATGTCCTTGCGTNTT-------TACCGAAAAA-GAA-AAC-CTGT-GTAATGAATCAATATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTAT-T-CATG-GAAAATGA-AAG--T-A-T-A--GGC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--AAAA--TT-TCAA-CAAAG-AT--------ATGTAATTATACACT---TCCGTATTTTCTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAATATGATGATAGTCTACCTAAATTGGATATCTAAAATGTTTTTACAGG--GGTAATTTTGTTGGAATGAATTGGCGTGTCCTCGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTCCGCCGCGTGTTACTTTTTTAAAACGTAAACACCATGGGACATTAAAGACAAAACAATGCCGTTATTNTATTATTTATTAGAAATAATATTCATGATTATTGTGATTCCANACTTTTCTTAAGAACNTATGTAANTANATTGAATCAATTTACAGTTTTGTATAATCAGTAAGCATACATTAAAGTCGCGTCTTTTGATTTAAGTAAACACGAA-GGACAATANAGGGTAACATGAAGTACAAAAAGTGTACATT-AATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGAGCGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTNGCAATATGGTTGATCGATATT-CAAAAAGTC---TTTAAAAAAAAA-AATTT-TGCA-GCTTTTGG-----TAACAGCAACGGACTGTAAT-------GGTAACATTAAGGACA--------------------TTTGGAGTTTT-GTTTTTTTTTTN-AATCTAGAT-GCTCTATATTTAATCTA---TGTAG-TTTTTTTG-GTAGTTTTTTCA---AAATCTAAATGCTCT--ATATATA-ATCTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-A-TAAGTATAGAATTAA-AAAAAA--ACNAT---CCGGAANCATTAAAAAGGATTAGT-CCTTC-C-TGTTACAGCTTTGTCTCTGC-TGTTAC-AG------TG-T-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCATT-ATTGATCA-CTAATGAT-CTCGA----CTT-TTGTTAAATAT----ACT-GCAAATATT---ACTATTTTTCAA-CAT-AGTTGTGA-A-CCATGT-CATT----GT-GTT-ATGTCTTTGTATNTTNAA-AATA-TAGAACAATGTC--ATGT--TCAA---TTTTGC-AAATTT-TGAG-AGAAG--AGTT-----AACTTAG-------TACGANAA--AAA---GNTCA---TGTAT-T----TAT-----G-TTT---ACA--ACA--TAAGAGCC-TT--TGTAAAA---CGCATA-T-ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TGAAATGAA-----ATATAT----ATCTTCTTTGAT-ATA---AA-A-TAA-TAT--------------TCAATT-TTATTTAAAG--TAACACCAGGGACA--TATTTTTC-A-GC--TGT--AGC-ATGTATAA-C--------CTT--GATAA---T--CTA-CGA-AA-TGG-AACA--ATTTG-TTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCAGTATT--TAGTT-------AGA-TAA-TCAA-AA-TAAAGATG-AAAAAATTAC--A--ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCC--G-A-AATAA---AGACA---TTTT--TTGAAA---ATGACC
Reference ( family-3707 ) : ATGTTGTG----GT-CA-T-CGCATA--T-TATT-TAT-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT---TAAA-T--G---A-TTT-GTTG-----AA-TGTG--ATATTTCAT-TT-ACTAACCTTGA-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-AAGA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATA---T-TG-CATGTCCC---AAATGTT--A--TTTTCAATAC-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAA--TA-A---TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-ATAAAA-TG-TTAC--TT-----T---TT-CA--GGTAA-TCT-------TAATC-GTTGT-A----------CTT------G-AAA--ATATGTCCTTGCGTNTT-------TACCGAAAAA-GAA-AAC-CTGT-GTAATGAATCAATATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTAT-T-CATG-GAAAATGA-AAG--T-A-T-A--GGC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--AAAA--TT-TCAA-CAAAG-AT--------ATGTAATTATACACT---TCCGTATTTTCTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAATATGATGATAGTCTACCTAAATTGGATATCTAAAATGTTTTTACAGG--GGTAATTTTGTTGGAATGAATTGGCGTGTCCTCGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTCCGCCGCGTGTTACTTTTTTAAAACGTAAACACCATGGGACATTAAAGACAAAACAATGCCGTTATTNTATTATTTATTAGAAATAATATTCATGATTATTGTGATTCCANACTTTTCTTAAGAACNTATGTAANTANATTGAATCAATTTACAGTTTTGTATAATCAGTAAGCATACATTAAAGTCGCGTCTTTTGATTTAAGTAAACACGAA-GGACAATANAGGGTAACATGAAGTACAAAAAGTGTACATT-AATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGAGCGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTNGCAATATGGTTGATCGATATT-CAAAAAGTC---TTTAAAAAAAAA-AATTT-TGCA-GCTTTTGG-----TAACAGCAACGGACTGTAAT-------GGTAACATTAAGGACA--------------------TTTGGAGTTTT-GTTTTTTTTTTN-AATCTAGAT-GCTCTATATTTAATCTA---TGTAG-TTTTTTTG-GTAGTTTTTTC----AAATCTAAATGCTCT--ATATATA-ATCTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-A-TAAGTATAGAATTAA-AAAAAA--ACNAT---CCGGAANCATTAAAAAGGATTAGT-CCTTC-C-TGTTACAGCTTTGTCTCTGC-TGTTAC-AG------TG-T-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCATT-ATTGATCA-CTAATGAT-CTCGA----CTT-TTGTTAAATAT----ACT-GCAAATATT---ACTATTTTTCAA-CAT-AGTTGTGA-A-CCATGT-CATT----GT-GTT-ATGTCTTTGTATNTTNAA-AATA-TAGAACAATGTC--ATGT--TCAAG--TTTTGC-AAATTT-TGAG-AGAAG--AGTT-----AACTTAG-------TACGANAA--AAA---GNTCA---TGTAT-T----TAT-----G-TTT---ACA--ACA--TAAGAGCC-TT--TGTAAAA---CGCATA-T-ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TGAAATGAA-----ATATAT----ATCTTCTTTGAT-ATA---AA-A-TAA-TAT--------------TCAATT-TTATTTAAAG--TAACACCAGGGACA--TATTTTTC-A-GC--TGT--AGC-ATGTATAA-C--------CTT--GATAA---T--CTA-CGA-AA-TGG-AACA--ATTTG-TTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCAGTATT--TAGTT-------AGA-TAA-TCAA-AA-TAAAGATG-AAAAAATTAC--A--ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCC--G-A-AATAA---AGACA---TTTT--TTGAAA---ATGACC
gi|1 : ATGTTGTG----GT-CA-T-CGCAT---T-TATT-TAA-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT----AAA-T--G---A-TTG-GTTG-----AA-TGTG--ATATTTCAT-TT-AGTAACCTTGA-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-AAGG-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-TA--TT--TGG-TCAAATATA---T--G-CATGTCCC---AAATGTT--A--TTTTCAATAC-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AAAAA-TA-A---TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---ACA------T-------TG-TCT-ATAAT--TG-TTAT--TT-----T---TTTCA--GGTAA-TC---------AATC-----------------------------------TATG---------CTT-------TACAAAAAAA-TAA-AACACTGT-GTA-TGAATCAATATA-TCC-CTTTGCGCACCTCATATCTGCACGTCATCCTGAATAC-TTATGT-CATG-AGAAAT-A-AAG--TGA-T-A--GGCC---GAGGG--AAAGTTA--CTGAAAGGG-TGGATAG----AA---A--AGAAATTT-TCAAACAAAGGAT--------ATTTAATTATACACT---TCCGTATTTTCTGATGTTGTC-CTTAATGT-TACCATCGAAATAAACTATAACAATATGATGATAGTCTACCTAAATTGGATATCT-AAATG-TTTTACAGAGCGGTAATTTTGTTGGAATGAATTGGCGTGTCCTTGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTCCGC--CGTGTTACTTTTTTAAAACGT-AACACCATGGGACATTAAAGACAAAACAATGCCGTTATTTTATTATTTATTAGAAATAA-ATTCATGATTATTGTGATTCCATAC-TTTCTTAAGAACTTATATAACTAGATTGAATCAATTTACAGTTTTGTATAATCAGTAAGCATACATTAAAGTCACGTCTTTTGATTTAAGTAAACACGAACGGACAATACAGGGT-ACATGAAGTAC--AAAGTGTACATT-AATCGATTTTATCCAACTGAATATTTCAATATTTTTCAATACAGATGGA-CGTAATTCGATATAATTGTTGCAAATAGTTATAAATATATATTTGCAATATGGTTGATCGATATT-C-AAAAGTC---TTTTAAAAAAGA-AATTT-TGCA-GCTTTTGG-----TAACAG-AACGG-CTGTAAT-------GGTAACATTAAGGACA--------------------TTTGGAGTTTT-GGTTTTTTTTAT-AATCTAGAT-GCTCTATTTATAATCTA---TGTAG-TTTTTTTT-GTAGTTTTTTC----TTGT-TAAA--------ATCTATA-ATCTATGTG-TG-CTATAAA---AAAT-AT-TATTA--TCAA-TAAGTATAGAATTAA-ATAAAA--ACAATCAACCGGAAACATTAAAAAAGATTAGT-CCTTC-C-TATTACAG-TTTGTCTCTGC-TGTTAC-AG------TGCT-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCCTTAATTGATC--CTTATGA--CTCGA----CTT-TTGTTAAATATACTAACT-GCAA--ATT---ACTA-TTTTCAA-CAT-AGTTGTGA-ATCCATGT-CATT----GT-GTT-ATGTCTTTGTATTTCAAA-AATA-TAGAACAATGTC--ATGT--TCA----TTTTGC-AAA-TT-TGA--AGAAG--AGTT-----AACTTAG--------AAGAAAA--AAA---GT--A---TGTA--T----TAT-----GTTTT---ACA--ACA--TAA-AGCCTTT--TGTAAAA---CGCATA---ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TGAAATATA-----ATATAT----ATCTTCTTTGAT-ATA---AA-A-T-A-T-T--------------TCAATT-TTA-TTAAAG--TAACACCAGGGACA--TATTTTTCGA-GC--TGT--AGC-ATGTATAACC--------CTT--G--AA---T---TA-C-A-AA-TGG-AACA--ATTTG-TTTTTT-----GCA-T-TTTTGTCGTT-T--ATTGC-GTATT--TA-TT-------AGA-TAATTCAACAA-T-AAGATGAAAAAAATTAC-----ATATAAG-GTCA-T-CAT-TT-TTTAAGTTT---A----T--TCAT---TCC--G-A-AATAA---AGACAGTTTTTT--CTG-AA---ATGACC
gi|10 : tatatgggtcgatttcaaaaaatgtctaaA-T-GTCTTTATTTTTG-TA--GCGTAA-T-TTA-TGTCCA-TGAA-TGAA------TATAT----ATCTTCTTTGAT-CTA---AA-AATGA-TAT--------------TCAATT-TTATT--AAG--TACCACC-GGGACA--TATTTTTC-A-GC--TGT--AGC-ATGTATAA----------CTT--GATAA---T--CTA-CGA-TA-TGG-AACA--ATTTGTTTTTTT-----GCA-T-TTTTGTTGTT-TA-ATTGCAATATT--TAGTT-------AGA-TAA-TCAA-AA-TAAAGATG----AAATTA---A--ATATAAGCGTCA-T-CA--TT-TTTG---TT---A----T-cat
gi|11 : aaaaATGTTGTG----GT-CA-T-CGCA-A--T-TATT-TAA-TAAC-TAACT-A-TATTT---T-AAAC----GT-TTT----AAA-T--G---A-TTT-GTTG-----AA-TGTG--ATATTTCAT-TT-AGTAACCTTGA-CA-TA-AT--GGA-AA-CACAT----TAC-A-ACGATTG-T-AAGA-A-TT-AATA--T-TTT--G-ACAA---TTCAT-ATG-C-GA--TT--TGG-TCAAATATA-----TG-CATGTCCC---AAATGT------TTTTCAATAC-A-T---T
gi|12 : tgggtcgatttcaaaaaatgtctaaATGTTGTG----GC-CAAT-C-CAT---T-TATT-TATCTAAC-CAACTTA-TAGTTG--T-AAAC----GT-TTT----AAA-TTGG---A-TTT-GTTGTCGATAA-TGTG--ATATTTCAT-T---CTAAACCTGA-CA-TA-AT--GGATAAACACAT--------A-ACGATTGCT-AAGAGA-TT-AATA--T-TTTTTA-ACAA---TTCAT-ATG-CCAA--TT--TGG-TCAAATATA---T-TG-C-TGTC
gi|13 : tatatggtcgatttcaaaaaatgtctaaAAG-TC-GAAA-ATATG--C-AGGAA-AAAA--TA-A---TA-TTTCAT-T-A--TGTAAAACTATA-TT-TTTGAAAAG-AT-CTG-AAAT--AAAG---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGTAACAAA------TTTTACTATGTTCT-AT-AAA-TG-TAAA--TT-----TCTATT-CA--GATAA-ATC-------TAATC-GTTGT-A----------CTT------GAAAA--ATATGTCC
gi|14 : TCAATTTACAGTTTTTTATAATCAGTAAGCATACATTAAAGTCGCATCTTTTGATTTAAGTAA-CACGAA-GGACAATAAAGGGTAACATGAAGTGCAAAAAGTGTACATT-AATCGATTTTATCCAA
gi|15 : --------------------TTTGGAGTTTTGGTTTTTTTTTTA-AATCTAAA--GCTCTATATTTAATCTA---TGTAGCTTTTTTTG-GTAGTTTTTTTATGAAAATCTAAATGCTCT--ATATATA-ACCTATGT
gi|16 : TTTTTT----AAATCTAAATGCTCT--ATATATA-ATGTATGTG-TG-CTAT-AA---AAAT-AT-TATTA--TC-ACTAAGTATTGGATTAATAAAAAA--ACCAT---CCGAAAACATTAAAAAG
gi|17 : TATT--TAGTT-------AGA-TAA-TCAA-AAATCAAGATG-AAAAAGATAC--A--ATATAAGCGTCATT-CATCTT-TTTG---TCGGGA----TAATC-TA--TAC--GAA-AATAA---AGACA---TTTT--TTGAAA---
gi|18 : CTATACCAATATGATGATAGTCTACCTAAACTGGATATCTAAAATGTTTTTACA-G--GGTAATTTTATTGAAATGAATTGGCGTGTCCTCGACAGACGCCAC
gi|19 : CTAACCTTGA-CA-TG-AT--GGA-AAACACATTATGTAC-A-ACGATTG-T-AAGA-A-CT-AATA--T-TTT--
gi|2 : ATGTTGTG----GC-CA-TGCGCATAAATATATT-TAT-TAGC-TAACT-A-TATTT-----AAAC----GT-TTT---TAAA-T--G---AATTT-GTTG-----GA-TGTG--ATATTTCAT-TT-ACTAACCTT-A-CA-TA-AT--GGA-AAACACAT----TAC-A-ACGATTG-T-A-GA-A-TT-AATA--T-TTT--G-ACAA---TTAAT-ATG-C-AA--TT--TGG-TCAAATATA---T-TG-CATGTCCC---AAATGTT--A--TTTTCAATAA-A-T---TAAG-TC-GAAA-ATATG--C-AAGAA-AGAA--TA-A---TA-TTTCAT-T-A--TGTAAAAC---A-TTATTTGAAAAG-AT-CTG-AAAT--AAAA---GG--T---G---T-TGACAG-CAT---------TCAA-CA-----AA-TT---------TGT---AAA------T-------TG-TCT-ATAAA--TG-TTAC--AT-----T---TT-CA--GGTAA-TCT-------TAATC--TTG--A----------CTT------G-AAA--ATATGTCCTT-CGTGTT-------TACCCAAAAA-GAA-ATT-CTGT-GTAATGAATCA-TATA-TCC-CTTTGCGCACCTCATATCTG-ACGTCATC-TGAATACATTAT-TTCATG-GGAAATGA-AAG--T-AGT-A--GG-----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---A--AAAA--TT-TTAA-CAAAG-AT--------ATG-AATTATACACT---TCCGTATTT-CTGATGTTGTC-CTTAATGT-TACCAATGAAATAAACTATACCAGTATGATGATAGTCTACCTAAATTGGA-ATCTAA--TGTTTTTACAGG--GGTAATTTTGTTGGAATGAATTG-CGTGTCCTAGACAGACGCCACGATGGATTTCTGCCAAATAATGTTGCGTATGTCCGTTATGTTACTGTC-GCCGCGTGTTACTTTTT-AAAACGTAAACACC-TGG-ACATTAAAGACAAA-CAATGCCGTTATTGTATTATTTAT-AGAA-TAATATTCATGATTATT-TGAT-CCAAACTTTTCTTAAGA-CGTATGTAAATATATTGAATCAATT-ACAGTGTTGTATAATCAGTA-GCA-ATATTAA-GTCACGTCTTTTGATTTAAGTATACACGAAAGGACAATAGAGG-TAACATGAAGTACAAAAAGTGTACATTTAATCGATTTTATCCAACTGAATATTTCAATATTTT-CAATACAGATGGAGCGTAATT-GATATAATTGTTGCAAATAGTTATAAATA---ATTAACAATATAGTTGATCGATATT--AAAAAGTC---TTTAAAAAAAAAGAAATT-TGCA-GCTTTTGG-----TAACAGCA-CGGACTGTAAT-------GGTA-CATTAAGGACA--------------------TTTGGATTTTT-TTTTTTTTTTTA-AATTTAGAT-GCTCTATATTTAATCTA---TGTAG-GTTCTTTG-GTAGATTTTTCA---AAATCTAAATGCTCC--ATATATA-ATTTATGTG-TG-CTAT-AA---AAAT-AT-TATCA--TC-A-TAAGTATAGAATTAA-AAAAAA--ATAAC---CCGGAACAATTAAAAA-GATTAGT-CCTTC-C-TGTTACAGTTTTGTCTCTGC-TGTTAC-AG------TG-T-----------GTCCCTCCTGTTACTTGTCAAAAATATTGAAAAATA---A--TATCATT-ATTGATCA-CTAATGAT-CTCGA----CTT-TTGTTAAATAT----ACT-GCAGATATT---ACTATTTTTCAACCAT-AGTTGTGA-A-CCATGT-CATT----GT-GTT-ATGTCTTTGTATATTCAA-AATA-TAGAACAATGTC--ATGT--TCAA----TTTGC-AAATTT-TGA--AGAAG--AGTT-----AACTTAG--------ACGAAAA--AAA---AGTCA---TATAT-T----TAT-----G-TTT---ACA--ACA--TAA-AGCC-TT--TGTAGAA---CGCATA---ATTTCTATAATTG-TA--GCGTAA-T-T-A-TGTC-A-TAAAATG-A-----TTATAT----ATCTTCTTTTAT-AT----AA-A-TAA-TAT--------------TCAATT-TTATTTAAAG--TAACACCAGGGACA--TATTTTTC-A-GC--TGT--AGC-ATGTATAA-C--------CTT--GAT-A---T--CTA-CGA-AA-TGG-AACA--ATTT--TTTTTT-----GCATT-TTTTGTTGTT-T--ATTGCAGTATT--TAGTT-------AGA-TAA-TCAA-AA-T-AAGATG-AAAAAATTAC--A--ATATAAGCGTCA-T-CAT-TT-TTTA---TT---A----T-ATCATA--TCC--G-G-AAT-A---AGACA---ATTT--TGGAAA---AGGACC
gi|20 : T-TTTAG--TT---A----T-ATCATA--TCC--G-A-AATAA---AGATA---TTTT--TTGAAA---ATGACC
gi|3 : GATATCACAAAAAGTCCTGTTTAAAGAAAAA-CGTTTCTGAAAGTTTTTGGGTCCATAA--GCAACAGACT--AATTATTCCAGGTAACATAACGGACAGTTAGGATTTTTCGGTGTTTCTTGGGGTTTT-ATTTTTTTTTTTTAATCTAAATCGCTCTATATTTA-TCTACCTTGTAG-TTTTTTGGCGT-GTTTTATCTGTTAGATCTAAATGCTCTCCATATATATAT-TATGTGGTGTCTAT-AACAAAAATCATGTATTAAATC-A-TAAGT-CA-AATCAG-GAAAAATCACCA-----CGAAATCATTAAAAGGAATTAGTTCCTTCACATGTTAC--CCCTGTCTTAGCATGTTCCTAGATTCTCTG-TTTGAATTGCTGGTCCCTCCTGTTACTCGTCAAGAGTAT--AAAAATA---AGATATCAA--AT--ATCAGCTAATAGCACTCGAGGCTCTCGTTGTTAAA-AT----GCTTGCAAATATTTGAA--ATTTTTCAA-CATTAGTTATGA-A-CCATAC-CATT----GT-GTTTATGTCTTTGCATTTTGAA-AATA-TAGAA-AATGTT--AAGT--TCAAA--TTTTGC-AAATTT-TGAA-AGAAG--AGTT-----AAACTAGA------TACGATGA--AAA---GATCAATATATAT-TGTACTAT-----G-T------CA--CCA--TAAGAGCC-TT--T-TGAAA---CGCATAAC-ATTTCTATAATTG-TATGGCGTAA-TAT-AATTTC-AATGAAATGAATATTAATAGAT----ATCTTCTTTGAT-ATA---AA-A-TAA-TATAATTTTTTTATTATTCAGTT-TTATT-AAAG--TAACACCAGGGACA--CACTTTCC-A-GC--TGT--AGC-ATGTATAATC--------CTTCAGATA----T--CTA-CGA-AA-TGG-AACA--ATTTG-TTTTTT-----GCATT-TT-TGTTGTT-T--ATTGCAGTATT--TAATT-------AGA-TAA-TCAA-AT-TAAAAATG-AAAAAATTAC--A--A-ATAAGCGTCA-T-CAT-TT-TTca
gi|4 : aatgcaaaaatagattagctcaTTGTG----AT-CA-TTCGTATA--T-TATTATAT-------AA-T-A-CATT--------AC----GT-TTT---TAAA-T--G---A-TTTGGTTG-----AA-TGTGA-ATATTCCATAAA-ACTAACCTTGA-CACTGCAT--GG--ATACACAT----TAC-ATACGATTG-T-AAGA-AGCT-AATA--T-TTT--GAACAAATTTCCATCATG-CGGA--TT--TTG-TTCAATATA---C-TGCCATGTCCC---AAAT-TT--ATTTTTTCATTACTA-T---CGAGTTC-GAAA-ATATG--CTAAGAA-AAAA--AA-AACGTC-TTTCAT-TCAATTGTAAAGC-ATA-TT-CTTTAAAAG-A
gi|4 : tatatggcgtcgatttcaaaatgtctaaatG-GAAT--AAAGCG-GA--T---GG--C-TGACAG-C-T---------TCAA-CA-----AA-TTC--------TGT---AAT------T-------GG-TCT-TTAAA--TG-TT-C--TTCTTTCT---TT-CA--CATAA-TCT--------AATC-GT-GT-AA---------CTT------G-AAACAATATGTCCTTGCATTGT-------TACAGAAAAA-GAA-AAA-TCGTTGTATTGA-TCAATATAATCCTCTTTGTGCACCTCATATCTG-ACGTCATC-TGAATA-ATTAT-T-CATG-GAAATTGACAAG--T-A-T-ACTGCC----GAGGGACAAAGATCACCTGAA--GGATG-ATAGAGAAAG---A--AAAA--TTCTCAA-CAAAG-AT--------ATG-A--TATAAACTACATTCGTATATTCTGATGTTGTCTTTTAATGTATACCTATaatgtctagtttaaaagttactagcccttttgtgcaactgggaataaagcggatggctgacagcttcaacaaattctgtaattggtctttaaatgttcttctttctttcacataatctaatcgtgtaacttgaaacaatatgtccttgcattgttacagaaaaagaaaaatcgttgtattgatcaatataatcctctttgtgcacctcatatctgacgtcatctgaataattattcatggaaattgacaagtatactgccgagggacaaagatcacctgaaggatgatagagaaagaaaaattctcaacaaagatatgatataaactacattcgtatattctgatgttgtcttttaatgtatacctat
gi|5 : tatatggcgtcgatttcaaaatgtctaaatttgtgatcattcgtatattattatataatacattacgtttttaaatgatttggttgaatgtgaatattccataaaactaaccttgacactgcatggatacacattacatacgattgtaagaagctaatattttgaacaaatttccatcatgcggattttgttcaatatactgccatgtcccaaatttattttttcattactatcgagttcgaaaatatgctaagaaaaaaaaaacgtctttcattcaattgtaaagcatattctttaaaagaaatgtctagtttaaaagttactagcccttttgtgcaactgATGTTGTGCCCCGT-CA-T-CGCAT---T-TATT-TATATACCCTAACT-A-TATTTCCTT-AAACACCCGT-TTTAGCTAAACT--GCCCA-TTTTGTTG-----AA-TGTACTATATTTCAT-TTTACTCACCTTGA-C--TA-ATTGGAA-AAACAC-T----TAC-A-ACGATTG-CCAAGA-A-TTGAATACCT-TTTAAG-ACAA---TTC-T-ATGGC-GAATTT--TGG-TCAAATAAA---TATG-CATGTTCTCAAAAATGGT--A--ATTT--ATAC-A-TACATAAG-TCAGAAA-ATATGAAC-AAGAA-AAAA--AA-A---TAATTTCAT-T-AA-TGTAAAACTATA-TT-TTTGAAAAG-ATTCTG-AAATCTAAAGCCCGG--TCAAG---TGTGACAGGCAT---------TCAAACA-----AAATT---------TGT---AAA------T-------TG-TCT-ATAAAA-TGATTAC--TT-----T---TTGCA--AGTAAATCT-------AAATCCGTTGTTA----------CTT------G-AAA---TATGTCCTTTCGTGTT--------ACCAAAAAAAGAATAAC-CTGT-GTAATGAATCAA-AT--TCC-CTTTG-GCACCTCATATCTG-ACGTCATC-TGAATA-ATTAT-T-CATGCGAAAATGA-AAGGTT-A-TAA--GGCGCAAGAGGG--AAAG-T---ATGAA--GG-TG-ATAG----AAAAGA--AAAA--TT-TCAA-C-AAG-AT---------TGTAATTATACACT---TCCGTATTTTCTCATGT
gi|6 : gaatcgatttcaaaaatgtcctaaTTGTGA-A-GC-TGTTCATTCGTGGTTGTT-GTTTCTATGTATATTCAAGAATAGTAGAACAATGTCCGATGTATCCAAGCTTTTTGCTAGATCTGTGAG-AGAAG--AGTTGGTGCACCTTAGGGTTATTTAC-AGAACCAAACTTAGTCA---GGTATAT----TATCGTTGG-TTTGGGACATTACA--TAAGAGCC-TTGTTGAAAAAATTCGCATA-TTATTTTTATAATTGCTA--GCGTAAAT-T-A-TGTCGA-TGAAATGAA-----AGATATGATGATCTTCTTTGATTATATGGAACA-TAAATAT--------------TCAATTGCTATT--AAGCTTAACACCAGGGACAAGT-TTTTTC-ATGCCCTATTGAGCTATGCATAA-TATGGGTTACTT--G-TAAGGGT--CTATCAATAACTGGTAACACCATTTG-TTTTTTTTGGGGCATTATTGTGTTGTTGTGAATTTTGGCATTGTTGGTTGATTCCTAGAATAA-TCAA-A--TAAAGATG-AAGAAATTACTTT--ATAAAAGCGTCA-TCCAT-TTCTTTA---TT---A----T-ATCATACGTTC--G-ATAATAACTGAG-CA---TTTTTGTTGAAACCCATGACC
gi|7 : TCCTTACCCTTACTTGTCAGTTATATT----AATTTTTA--TGTGATT-ATTGATCA-CTAACGAT-CTTGA-----TA-TTGT-ACATGT----ATT-GCAAAT--T---ATAATTCTTTAA-CAT-AGTTACAATA-TTACAT-CAGT----GT-CTA-ATATCTTTGGATGTCTTA-AATG-GAGAACAATGTA--AAAC--TTAA---TTTTGC-AATATA-TGAGTAGAAGCTAGGT-----A---TA--------TATGACAA--AAA---GCATA---TGCAC-T------------G-TTT---GTA--GCAAATAATTTCT-TT--CCTATTC---TTCA-A-T-ATTTCTATTATT---A--GCATAT-T-T-T-TGCC-A-AAAAA-GGA-----GTAAAT----ATTTTGTTTGAT-CAA---AA-A-TTA-TAT--------------CTAATT-TAGTATGA----TGACACCAAAGACA--CATGTTTC-A-GC--TGT--AAT-ATGTA-AA-CT-------CTT----TTA---TTGCTA-TTA-AA-TGG-GTCA--ATTCA-TTTATT-----GCATA-TTTGATT-TT-C--GTCGCAGT-TT--GAATT-------AGT-TCG-TCAA-AATTAAACATG-CTAAAAGTCC--AATATATAAGACTTA-T-GAT-TT-TGTT---TT---ACCTCT-ATCATA--TTCTTG------AG---AAACA---TATT--TTGGAA---ATGACca
gi|8 : TA-AAAT--AACGA--GG--T---GATAT-TGACAG-CATCCAAGAGTCTCAA-CATTGTCAA-TTAAATAAAAATGT---GAAATTAGTT-------TG-TCTTATAAAACTG-TTACATTT-----C---TT-CATAGGTAA-TCTGTTTCTCTAATC-CTTGT-ATGCCTAATTACTTCGATAAG-AGAT-ATGTGTCCTTGCGTATGGGGAGGATACC-AAAAA-GAA-AAC-CTGT-GTAATGAATCAATATA-GCC-CTTTGCGCATCTCATATCTG-ACGTCATC-TGAATACATTAT-T-CATG-GAAAATGA-AAG--T-A-T-A--GGC----GAGGG--AAAGAT---CTGAA--GG-TG-ATAG----AA---AAGAAAA--TT-TCAA-CAAAG-ATATGTACAAATGTAATTATACACT---TCCATATTTTCCGATGTTGTC-CTCAATGT-TACCAATGAAATAAACTATACCAATAtcatata
gi|9 : ctatgtataagatcatgatgaaatgtgattaTTCTG----GTGCA-T-CGTATC--TCTATT-TAT-TAACCTAATT-AATACTT---TGAAAC----ACGTTT---TAAA-T--G---A-TTT-GTTG-----AAATGTG--ATATTCCAT-TA-ACTA-CCTTGAACA-TG-AT--GGA-AAACACAT----TACAA-ACGATTG-T-AAGA-A----ACTA--TATTT--G-AGAA---TTCAT-ATG-C-GA--TTCGTGGATC-AATATACCGT-GG-CATGTCCA---TAATTTTAAA--TTTTCATTAC-ACT---TAAC-TT-GAAAGATATG--C-AAGAATAAAATTTATA---TC-TTTCATCC-A--TGTAACACTATACTT-CTTGAAAAGAAT-CTGAAAAT--AAAC---GGAAT---G---C-TGA