lowQualScore : 55 4 4 4 888888888888888888 2 99999999999999999999999999999 1 2 222 33 2 11 1 11111 1 333 11 1 1 3333 1 2222 2222 333333333 1 1 11 22222 1 111 3333333333 3333333333333 1 11111 1 22 1
lowQualScore : 6 55 0 0 6 0 2 333333333333333333 0 3 11111111111111111111111111111 5 55 0 333 3 7 11 6 6 88 3 3 88888 0 000 33 0 0 5555 2 0 1111 3 0000 0 999999999 0 7 0 33 1 00000 8 0 6 8 0 2 000 5555555555 0 0 9999999999999 5 0 5 0 22222 0 66 8 3 3 3 55 33 33 2 0 77 3 444 3 6 1
lowQualScore : . .. . . . . . .................. . . ............................. . .. . ... . . .. . . .. . . ..... . ... .. . . .... . . .... . .... . ......... . . . .. . ..... . . . . . . ... .......... . . ............. . . . . ..... . .. . . . . .. .. .. . . .. . ... . . .
lowQualScore : 0 00 0 0 0 0 5 555555555555555555 0 0 00000000000000000000000000000 5 55 0 333 7 3 77 7 7 33 3 2 88888 0 888 88 0 0 2222 5 0 2222 5 8888 8 000000000 0 0 0 55 0 00000 0 8 0 0 8 2 222 0000000000 8 8 9999999999999 0 0 0 4 55555 0 11 0 6 6 6 00 99 99 9 1 33 1 999 1 2 5
consensus : CTGAATGGTATTCTCGGAATTACCGGACAACTAGCAGTGTCTCCGCCATTGATCAACCAACTCAACTGGCCCACATTACANGAGCGCAGGGCCCAAACCTAAAGCCACCATTGNTGTACAGGAGTTTGTTGTACCAGATNGATTNTCATCTTCATACNNTCTAAC---TATCCTNGTACCAA-CCATCTCTCCGAGGAGG--AACAAC-GTTACCTTCCTCGTGCCGNT-TGCCAGGAC-TTTA-ACATAC--CAGAA-GTCCTTCT-TCCCAGACG--G-ATCA-GGATCTGGAACTCAC-T-CCATCNGAAGC---TGTCAGTGAAAGC---ATC-CATAG-ATAGCTTCAAGTNCCAGATCCAGACCTA-----CAC-TATT-CGACCATAAG-GACCTGGATTTT-AACC----------TTTTAATTGCA---CTGTAAAT-GTTTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-AT--GCG-CTGGTACGAAAA--T-ACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
Reference ( gi|2 ) : CCGAATGGTATTCTCG--ATTACCGGACAACTAGCAGTGT-TCCGCCAT-GATCAACCGACTCAACTGGCC-ACATTACAGGAGCGCAGAGCCCAGGCC-AAAGCTACCAT-GATGTACAGGA-TT-GT-ATACCAGATG-ATTG--A----CATACCATC-AAC---TATCCTGGTACCA--CCATCTCTCCAAGG-GG--AACAAC-ATTACCTTCCTTGTGCCGTT-TGCCAGGAC-TT-A-ACATAT--CAGAA-GTCCTTCT-TCCCAGATG--GGATCA-GGATCTGGAACTCAC-T-CCATCTGAAGC---TGTCAGTAAAAAC---ATC-CATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----CAC-TATT-CGACCATAAG-GACCTGAATTTT-AACC----------TTTTAATTGCA---CTGTAAA--ATTTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-AT--GC--CTGGTACGAAAA--T-ACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
gi|1 : CTGAATGGTATTCTCGGAATTACCGGACAACTAGCAGTGTCTCCGCCATTGATCAACCAACTCAACTGGCCCACATTACAGG---------------CC-AAAGCTACCATTGATGTACAGGA-TTTGTTGTACCAGATGGATTG--A----CAT-CCATC-AACAACTATTCCTGTACCAAACCATCT-TCCAAGGAGG--GACACCTGTTACCTTCCTTGTGCCGTT--GCCAGGAC-TTTA-ACATATATCAGAA-GTCCTTCTCTTCCAGATG--G-ATCAAGGATCTGGAACTCAC-T-GCATCTGAAGC---TGTCAGTAAAA-C---ATC-CATAG-ATAGCTTCAAGTTCCCGATCCAGACCTA-----CAC-TATTTCGACCATAAG-GACCTGGATTTTTAACC----------TTTTAATTGCA---CTGTAAATAGTGTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC--TTGGTACGAAAA--T-ACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
gi|3 : ACACGAGCGCAGGGCCCAAACTTAAAGCCATCAT-GCTGTACAGGAGTT-GT-------GATC-ATTCTCATCTTCATACGCTCTAAC---TGTCCTAG-ACCT--TCTTTTCTCTGAAG-GGCAAACAAC-AACAGCTTCCTCG-GCCAATATGCAAGGACATT-G-ACTTAC--CAGAAAGTCCTTTT-TCCCACACC----AT-A-GTATCTGGAACGCTC-TTCCATCAGAAGC-------AGTGAATGCTCCATC-CCTGGTCTTGCTTCAAGCGCCAGATGCAGAC--------CAC-T------ACCATCAG-G-CCTTAGTC----ACCAGGCCTATGTTTTTATCTGCA---CTATA
gi|4 : ggccaatctatacAC---TATCCTGGTACCAA-CCATCTCGCCAAGGAGG--AACAAC-ATTACCTTCCTTGTGCCGAT-TGCCAGGAC-TTTA-ACATAT--CAGAA-GTCCTTCT-TCCCAGATG--GGATCA-GGATCTGGAACTCAC-TGCCATCTGAAGC---TGTCAGT-AAAAC---ATC-CATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----CAC-TATT-CGACCATAAG-GACCTGGATTTT-AACC----------TTTTAATTGCAGGGGTGGGTG--GTTTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-AT--GCG-CTGGTACGAAAA--T-ACACAGTTATAG--T-GTCA-T-GT-ACCGTA-ACAGGAAGAAGctatataatgtatatatatatagtatatatacatacatatataattttaaacttcacctgtaaataagttgttcctgcaccccatacgctggtacgagaaattacacaatatggtccagtaaccggcaacggaagaagcca
gi|5 : TGCCCCA-TGCCAGGAC-CT-CCACATAC--CAGCA-GTCCTTCT-TTCCAGACGCCATATCA-GGACTTGGAACTCACTT-TCAAAGGACGCCGTTGCCAGTGG-------GTCTCAT-G-AAATCTTCAAG----AGATCCCGGGCAAGCGATCACGTACTGCAACCATAAATGACCT
gi|7 : CCAGATCCAGACCTA-----CAC-TATT-CGACCATAGG-GACCTGGATTTT-AACA----------T----AT---A---C----------------TTTCTTCAC-CAA-CACATCAACATA-CGGACGT--CCTT-GCACC-AC-TGAAT--GCG-CTGGc
gi|6 : ACC----------TTTTAATTGCA---CTGTAAAT-ATTTCGTTTTTCTTCAC-CAA-TTC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-AT--GCG-CTGGTACGAAAA--T-ACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
gi|12 : TTTT-TTTTCCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-AT--GCG-CTGGTACGAAAA--T-ACACAGTTATAg
gi|9 : TTT-TTTTTTTTCACGCAAACAC-----TGTAACGGACGT--CCTTTGTACCGAC-TT-AT--GCG-CTGGTAC--AAA--T-AT-CATTTATAG--T-GTCA-T-AT-A-CGTAGGACGGAAGAAGAA
gi|10 : gTT-TTTCTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTTGGCATC-AC-TT-AT--GC--CTGG-ACGAAAA--T-ACA-AGTTATAG--T-GT-A-T-GT-ACCGTA-A-CGGAAGAAGA
gi|8 : TT-TTTTTTTTCACTCAA-C-------TGTAACGGACGTGTCCTT-GTACC-AC-TT-AT--GCG-CTGGTACGAAAA--TTATACATTTATAG--TGGTCATT-CT-GTTATA-ACCGGAAGAA
gi|3 : gGT--TCCT-GCACC-CC-AT-AC--GC---TGGTACGAGAAATT-ACACA-ATATGG--T--CCA---GTAACCGGC-AACGGAAGAAGaga
gi|14 : ggccaatctatacacacgagcgcagggcccaaacttaaagccatcatgctgtacaggagttgtgatcattctcatcttcatacgctctaactgtcctagaccttcttttctctgaagggcaaacaacaacagcttcctcggccaatatgcaaggacattgacttaccagaaagtcctttttcccacaccatagtatctggaacgctcttccatcagaagcagtgaatgctccatccctggtcttgcttcaagcgccagatgcagaccactaccatcaggccttagtcaccaggcctatgtttttatctgcactatactatataatgtatatatatatagtatatatacatacatatataattttaaacttcacctgtaaataagttCCT-GTACC-CC----AT--GCA-CTGGTTCGAAAA--T-ATACA---ATAG--T-GTCC-A-GT-ACCGGA-ACT-GAAGAAGAAcca
gi|11 : CC-ACATT-AT--GCAAC-AGTACAAAAA--T-ACGC---CAGAGGCG-GTCA-T-GT-ACTATA-A-TGGAAGAAGAAg
gi|18 : cacgagaggctctgccaatg--CTGGTACGAAAA--T-ACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCAGAAGAAGAgaa
gi|16 : --CTGGTCCGAAA---T-ACACATTTATAGC-T-GTCA-TGGT-ACCGCATACCGGAAAAAG
gi|17 : --CTGGTTCGAAAA--T-ATACA---ATAG--T-GTCC-A-GT-ACCGGA-ACT-GAAGAAGAA
gi|19 : gcaAAAA--T-ACACAGTTATAG--T-GTCA-T-GT-ACCTTA-ACCGGAAGAAGAAg
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): CAAAGGACACCGTTGCCAGTGGGTCTCTTAAAATCTTCAAGAGATCACTGCAACCATAAAACCTCTCAA
Unaligned ( gi|15 ): TTCAAGCGCCAGATGCAGACCACTACCATCTGGCCTTAGTCACCAGCCTATGTTTTTATCT
Unaligned ( gi|20 ): TTAATTGGCACATGTAAATAATTTCACTATTTTAACTG
Alignments
lowQualScore : 11 1 1 1 1 3333333 11 33 22 22 22222222 33333 222 1 11 111 11 33333 1 111 22222222 11111 2222 11111
lowQualScore : 88 5 5 5 4 1111111 0 44 1 88 77 00 99999999 7 22222 1 3 333 2 2 7 0 22 2 0 333 3 11 8 8 00000 8 6 8 1 444 77777777 8 3 8 77 3 66666 6 6 6 6 6 88 3 6 1111 4 8 4 11111 8 55 7 3 3 3 1 2 66 8 66 2 333 2 5 0
lowQualScore : .. . . . . ....... . .. . .. .. .. ........ . ..... . . ... . . . . .. . . ... . .. . . ..... . . . . ... ........ . . . .. . ..... . . . . . .. . . .... . . . ..... . .. . . . . . . .. . .. . ... . . .
lowQualScore : 00 0 5 0 0 0000000 7 77 0 77 33 77 33333333 3 33333 0 2 000 5 0 0 0 00 0 8 000 8 00 0 0 00000 0 0 0 0 000 66666666 0 8 0 66 5 77777 7 7 7 7 7 88 2 7 7777 4 9 4 11111 9 55 3 3 3 3 4 7 33 8 88 9 999 9 7 7
consensus : CCGAATGGTATTCTCGGAATTACCGGACAACTAGCAGTGTCTCCGCCATTGATCAACCGACTCAACTGGCCCACATTACA-GAGCGCAGGGCCCAGGCC-AAAGCTACCATTGATGTACAGGA--TTGT-GTACCAGAT-GATTG-CATCC-TCATAC--TC-AACTATCCTGGTACC-AACCATCTCTCCGAGGAG-GAACAAC-ATTACCTTCCTTGTGCCGNT-TGCCAGGACTTTAAC--ATATCAG-AAGTCCTTCT-TCCCAGACG---GGATC-AGGATCTGGAACTCACTT-CCATCTGAAGC---TGTCAGTGAAAA---CATC-CATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGGA-TTTTAACCTTTTAATTGCACTG-TAAAT-G-TTTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
Reference ( family-3679 ) : CTGAATGGTATTCTCGGAATTACCGGACAACTAGCAGTGTCTCCGCCATTGATCAACCAACTCAACTGGCCCACATTACANGAGCGCAGGGCCCAAACCTAAAGCCACCATTGNTGTACAGGAGTTTGTTGTACCAGATNGATTNTCATCT-TCATACNNTCTAACTATCCTNGTACC-AACCATCTCTCCGAGGAG-GAACAAC-GTTACCTTCCTCGTGCCGNT-TGCCAGGACTTTAAC--ATACCAG-AAGTCCTTCT-TCCCAGACG---G-ATC-AGGATCTGGAACTCAC-T-CCATCNGAAGC---TGTCAGTGAAAG---CATC-CATAG-ATAGCTTCAAGTNCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGGA-TTTTAACCTTTTAATTGCACTG-TAAAT-G-TTTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
gi|1 : CTGAATGGTATTCTCGGAATTACCGGACAACTAGCAGTGTCTCCGCCATTGATCAACCAACTCAACTGGCCCACATTACA---------GGCC-------AAAGCTACCATTGATGTACAGGA-TTTGTTGTACCAGATGGATTGACATCCATCA-AC-----AACTATTCCTGTACCAAACCATCT-TCCAAGGAG-GGACACCTGTTACCTTCCTTGTGCCG-T-TGCCAGGACTTTAACATATATCAG-AAGTCCTTCTCTTCCAGATG---G-ATCAAGGATCTGGAACTCAC-T-GCATCTGAAGC---TGTCAGT-AAAA---CATC-CATAG-ATAGCTTCAAGTTCCCGATCCAGACCTA-----C-AC-TATTT-CGACCATAAG-GACCTGGATTTTTAACCTTTTAATTGCACTG-TAAATAG-TGTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGCTTGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
gi|10 : TT-TTTCTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTTGGCATC-AC-TT-ATGC-C-TGG-ACGAAAA--TACA-AGTTATAG--T-GT-A-T-GT-ACCGTA-A-CGGAAGAAGA
gi|11 : CC-ACATT-ATGCAA-CAGTACAAAAA--TACGC---CAGAGGCG-GTCA-T-GT-ACTATA-A-TGGAAGAAGAA
gi|12 : cacgagaggctctgccaatg-TTTT-TTTTCCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACAGTTATAgaa
gi|14 : CCT-GTACC-CC----ATGCAC-TGGTTCGAAAA--TATACA---ATAG--T-GTCC-A-GT-ACCGGA-ACT-GAAGAAGAA
gi|16 : C-TGGTCCGAAA---TACACATTTATAGC-T-GTCA-TGGT-ACCGCATACCGGAAAAAGg
gi|17 : GCAC-TGGTTCGAAAA--TATACA---ATAG--T-GTCC-A-GT-ACCGGA-ACT-GAAGAAGAA
gi|18 : C-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCAGAAGAAGAg
gi|19 : AAAA--TACACAGTTATAG--T-GTCA-T-GT-ACCTTA-ACCGGAAGAAGAA
gi|2 : CCGAATGGTATTCTCG--ATTACCGGACAACTAGCAGTGT-TCCGCCAT-GATCAACCGACTCAACTGGCC-ACATTACAGGAGCGCAGAGCCCAGGCC-AAAGCTACCAT-GATGTACAGGA--TTGT-ATACCAGAT-GATTG--A-----CATACCATC-AACTATCCTGGTACC-A-CCATCTCTCCAAGG-G-GAACAAC-ATTACCTTCCTTGTGCCGTT-TGCCAGGACTT-AAC--ATATCAG-AAGTCCTTCT-TCCCAGATG---GGATC-AGGATCTGGAACTCAC-T-CCATCTGAAGC---TGTCAGTAAAAA---CATC-CATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGAA-TTTTAACCTTTTAATTGCACTG-TAAA--A-TTTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGC-C-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
gi|3 : ACACGAGCGCAGGGCCCAAACTTAAAGCCATCA-TGCTGTACAGGAG-TTGT-------GATC-ATTCTCATCT-TCATACGCTCTAACTGTCCTAG-ACC--TTCTTTTCTCTGAAGGGCAAACAAC-AACAGCTTCCTCG-GCCAATATGCAAGGACATTGAC--TTACCAGAAAGTCCTTTT-TCCCACAC----C-AT--AGTATCTGGAACGCTCTT-CCATCAGAAG-------CAGTGAATGCTCCATC-CCTGGTCTTGCTTCAAGCGCCAGATGCAGACC-A-----CTAC-CA-TC-AGGCCTTAGT-CACCAGG---CCTATGTTTTTATCTGCACTA-TA
gi|3 : ggccaatctatacGT--TCCT-GCACC-CC----ATACGC-TGGTACGAGAAATTACACA-ATATGG--T--CCA---GTAACCGGC-AACGGAAGAAGctatataatgtatatatatatagtatatatacatacatatataattttaaacttcacctgtaaataagttgttcctgcaccccatacgctggtacgagaaattacacaatatggtccagtaaccggcaacggaagaagcca
gi|4 : ggccaatctatacacacgagcgcagggcccaaacttaaagccatcatgctgtacaggagttgtgatcattctcatcttcatacgctctaactgtcctagaccttcttttctctgaagggcaaacaacaacagcttcctcggccaatatgcaaggacattgacttaccagaaagtcctttttcccacaccatagtatctggaacgctcttccatcagaagcagtgaatgctccatccctggtcttgcttcaagcgccagatgcagaccactaccatcaggccttagtcaccaggcctatgtttttatctgcactatactatataatgtatatatatatagtatatatacatacatatataattttaaacttcacctgtaaataagttACTATCCTGGTACC-AACCATCTCGCCAAGGAG-GAACAAC-ATTACCTTCCTTGTGCCGAT-TGCCAGGACTTTAAC--ATATCAG-AAGTCCTTCT-TCCCAGATG---GGATC-AGGATCTGGAACTCAC-TGCCATCTGAAGC---TGTCAGTAAAA----CATC-CATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGGA-TTTTAACCTTTTAATTGCAGGGGTGGGT-GGTTTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACAGTTATAG--T-GTCA-T-GT-ACCGTA-ACAGGAAGAAGcca
gi|5 : TGCCCCA-TGCCAGGACCTCCAC--ATACCAG-CAGTCCTTCT-TTCCAGACGCCAT-ATC-AGGACTTGGAACTCACTT-TCAAAGGACGCCGTTGCCAGTGG-------GTCTCAT-G-AAATCTTCAAG----AGATCCCGGGCAAGCGATC-ACGTA-CTGCAACCATAAATGACCT
gi|6 : ACCTTTTAATTGCACTG-TAAAT-A-TTTCGTTTTTCTTCAC-CAA-TTC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAAc
gi|7 : CCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAGG-GACCTGGA-TTTTAACAT----AT---AC------------------TTTCTTCAC-CAA-CACATCAACATA-CGGACGT--CCTT-GCACC-AC-TGAATGCGC-TGGg
gi|8 : TT-TTTTTTTTCACTCAA-C-------TGTAACGGACGTGTCCTT-GTACC-AC-TT-ATGCGC-TGGTACGAAAAT-TATACATTTATAG--TGGTCATT-CT-GTTATA-ACCGGAAGAA
gi|9 : gTTT-TTTTTTTTCACGCAAACAC-----TGTAACGGACGT--CCTTTGTACCGAC-TT-ATGCGC-TGGTAC--AAA--TAT-CATTTATAG--T-GTCA-T-AT-A-CGTAGGACGGAAGAAGAAaga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CAAAGGACACCGTTGCCAGTGGGTCTCTTAAAATCTTCAAGAGATCACTGCAACCATAAAACCTCTCAA
Unaligned ( gi|15 ): TTCAAGCGCCAGATGCAGACCACTACCATCTGGCCTTAGTCACCAGCCTATGTTTTTATCT
Unaligned ( gi|20 ): TTAATTGGCACATGTAAATAATTTCACTATTTTAACTG
Alignments
lowQualScore : 11 1 1 1 33333 1 2 2 1 1 777777777777777777 111 1 1 111 11 1111 111 22222222 11111 222 11111
lowQualScore : 88 5 5 5 00000 3 3 3 6 3 7 3 111111111111111111 0 3 777 3 2 2 7 0 0 0 333 3 11 8 8 9999 8 66 1 444 11111111 8 3 8 77 3 66666 6 6 6 6 6 88 6 3 333 4 8 4 11111 8 55 7 3 3 3 1 2 66 8 66 2 333 2 5 0
lowQualScore : .. . . . ..... . . . . . . . .................. . . ... . . . . . . . ... . .. . . .... . .. . ... ........ . . . .. . ..... . . . . . .. . . ... . . . ..... . .. . . . . . . .. . .. . ... . . .
lowQualScore : 00 0 5 0 77777 7 3 7 7 3 3 3 000000000000000000 2 2 222 2 5 0 0 0 0 8 000 8 00 0 0 2222 0 44 0 000 88888888 0 8 0 00 5 77777 7 7 7 7 7 88 7 2 000 4 9 4 11111 9 55 3 3 3 3 4 7 33 8 88 9 999 9 7 7
consensus : CCGAATGGTATTCTCGGAATTACCGGACAACTAGCAGTGTCTCCGCCATTGATCAACCGACTCAACTGGCCCACATTACA-G-AGCGCAGGGCCCAGGCC-AAAGCTACCAT-GATGTACAGGA-TTG-TGTACCAGAT-GATTG-CATCC-TCATAC--TC-AACTATCCTGGTACC-AACCATCTCTCCGAGGAG-GAACAAC-ATTACCTTCCTTGTGCCGNT-TGCCAGGACTTTAAC--ATATCAGAA-GTCCTTCT-TCCCAGACG--GGATC-AGGATCTGGAACTCACTTCCATCTGAAGC---TGTCAGTGAAAA---CATC-CATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGGA-TTTTAACCTTTTAATTGCA-CTGTAAAT-GTTTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
Reference ( family-3679 ) : CCGAATGGTATTCTCGGAATTACCGGACAACTAGCAGTGTCTCCGCCATTGATCAACCGACTCAACTGGCCCACATTACA-G-AGCGCAGGGCCCAGGCC-AAAGCTACCATTGATGTACAGGA-TTG-TGTACCAGAT-GATTG-CATCC-TCATAC--TC-AACTATCCTGGTACC-AACCATCTCTCCGAGGAG-GAACAAC-ATTACCTTCCTTGTGCCGNT-TGCCAGGACTTTAAC--ATATCAGAA-GTCCTTCT-TCCCAGACG--GGATC-AGGATCTGGAACTCACTTCCATCTGAAGC---TGTCAGTGAAAA---CATC-CATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGGA-TTTTAACCTTTTAATTGCA-CTGTAAAT-GTTTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
gi|1 : CTGAATGGTATTCTCGGAATTACCGGACAACTAGCAGTGTCTCCGCCATTGATCAACCAACTCAACTGGCCCACATTA----------------CAGGCC-AAAGCTACCATTGATGTACAGGATTTGTTGTACCAGATGGATTGACATCCATCA-A----C-AACTATTCCTGTACCAAACCATCT-TCCAAGGAG-GGACACCTGTTACCTTCCTTGTGCCG-T-TGCCAGGACTTTAACATATATCAGAA-GTCCTTCTCTTCCAGAT---GGATCAAGGATCTGGAACTCAC-TGCATCTGAAGC---TGTCAGT-AAAA---CATC-CATAG-ATAGCTTCAAGTTCCCGATCCAGACCTA-----C-AC-TATTT-CGACCATAAG-GACCTGGATTTTTAACCTTTTAATTGCA-CTGTAAATAGTGTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGCTTGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
gi|10 : TT-TTTCTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTTGGCATC-AC-TT-ATGC-C-TGG-ACGAAAA--TACA-AGTTATAG--T-GT-A-T-GT-ACCGTA-A-CGGAAGAAGA
gi|11 : CC-ACATT-ATGCAA-CAGTACAAAAA--TACGC---CAGAGGCG-GTCA-T-GT-ACTATA-A-TGGAAGAAGAA
gi|12 : cacgagaggctctgccaatgTTTT-TTTTCCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACAGTTATAgaa
gi|14 : CCT-GTACC-CC----ATGCAC-TGGTTCGAAAA--TATACA---ATAG--T-GTCC-A-GT-ACCGGA-ACT-GAAGAAGAA
gi|16 : C-TGGTCCGAAA---TACACATTTATAGC-T-GTCA-TGGT-ACCGCATACCGGAAAAAGg
gi|17 : GCAC-TGGTTCGAAAA--TATACA---ATAG--T-GTCC-A-GT-ACCGGA-ACT-GAAGAAGAA
gi|18 : C-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCAGAAGAAGAg
gi|19 : AAAA--TACACAGTTATAG--T-GTCA-T-GT-ACCTTA-ACCGGAAGAAGAA
gi|2 : CCGAATGGTATTCTCG--ATTACCGGACAACTAGCAGTGT-TCCGCCAT-GATCAACCGACTCAACTGGCC-ACATTACA-GGAGCGCAGAGCCCAGGCC-AAAGCTACCAT-GATGTACAGGA-TTG-TATACCAGAT-GATTG--A-----CATACCATC-AACTATCCTGGTACC-A-CCATCTCTCCAAGG-G-GAACAAC-ATTACCTTCCTTGTGCCGTT-TGCCAGGACTT-AAC--ATATCAGAA-GTCCTTCT-TCCCAGATG--GGATC-AGGATCTGGAACTCACT-CCATCTGAAGC---TGTCAGTAAAAA---CATC-CATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGAA-TTTTAACCTTTTAATTGCA-CTGTAAA--ATTTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGC-C-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
gi|3 : ACACG-AGCGCAGGGCCCAAACTTAAAGCCATCAT-GCTGTACAGGAGTTG-TG------AT-CATTCTCATCT-TCATACGCTCTAACTGTCCTAG-ACC-TTCT-TTTCTCTGAAGGGCAAACAAC-AACAGCTTCCTCG-GCCAATATGCAAGGACATTGAC--TTACCAGAAAGTCCTTTT-TCCCACACC----AT--AGTATCTGGAACGCTCTTCCATCAGAAG-------CAGTGAATGCTCCATC-CCTGGTCTTGCTTCAAGCGCCAGATGCAGACC-A-----CTAC-CA-TC-AGGCCTTAGT-CACCAGG---CCTATGTTTTTATCTGCA-CTATA
gi|3 : ggccaatctatacGT--TCCT-GCACC-CC----ATACGC-TGGTACGAGAAATTACACA-ATATGG--T--CCA---GTAACCGGC-AACGGAAGAAGctatataatgtatatatatatagtatatatacatacatatataattttaaacttcacctgtaaataagttgttcctgcaccccatacgctggtacgagaaattacacaatatggtccagtaaccggcaacggaagaagcca
gi|4 : ggccaatctatacacacgagcgcagggcccaaacttaaagccatcatgctgtacaggagttgtgatcattctcatcttcatacgctctaactgtcctagaccttcttttctctgaagggcaaacaacaacagcttcctcggccaatatgcaaggacattgacttaccagaaagtcctttttcccacaccatagtatctggaacgctcttccatcagaagcagtgaatgctccatccctggtcttgcttcaagcgccagatgcagaccactaccatcaggccttagtcaccaggcctatgtttttatctgcactatactatataatgtatatatatatagtatatatacatacatatataattttaaacttcacctgtaaataagttACTATCCTGGTACC-AACCATCTCGCCAAGGAG-GAACAAC-ATTACCTTCCTTGTGCCGAT-TGCCAGGACTTTAAC--ATATCAGAA-GTCCTTCT-TCCCAGATG--GGATC-AGGATCTGGAACTCACTGCCATCTGAAGC---TGTCAGT-AAAA---CATC-CATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGGA-TTTTAACCTTTTAATTGCAGGGGTGGGTGGTTTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACAGTTATAG--T-GTCA-T-GT-ACCGTA-ACAGGAAGAAGcca
gi|5 : TGCCCCA-TGCCAGGACCTCCAC--ATACCAGCA-GTCCTTCT-TTCCAGACGCCATATC-AGGACTTGGAACTCACTTTCAAAGGACGCCGTTGCCAGTGG-------GTCTCAT-G-AAATCTTCAAG----AGATCCCGGGCAAGCGATC-ACGTA-CTGCAACCATAAATGACCT
gi|6 : ACCTTTTAATTGCA-CTGTAAAT-ATTTCGTTTTTCTTCAC-CAA-TTC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAAc
gi|7 : CCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAGG-GACCTGGA-TTTTAACAT----AT---A-C----------------TTTCTTCAC-CAA-CACATCAACATA-CGGACGT--CCTT-GCACC-AC-TGAATGCGC-TGGg
gi|8 : TT-TTTTTTTTCACTCAA-C-------TGTAACGGACGTGTCCTT-GTACC-AC-TT-ATGCGC-TGGTACGAAAAT-TATACATTTATAG--TGGTCATT-CT-GTTATA-ACCGGAAGAA
gi|9 : gTTT-TTTTTTTTCACGCAAACAC-----TGTAACGGACGT--CCTTTGTACCGAC-TT-ATGCGC-TGGTAC--AAA--TAT-CATTTATAG--T-GTCA-T-AT-A-CGTAGGACGGAAGAAGAAaga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CAAAGGACACCGTTGCCAGTGGGTCTCTTAAAATCTTCAAGAGATCACTGCAACCATAAAACCTCTCAA
Unaligned ( gi|15 ): TTCAAGCGCCAGATGCAGACCACTACCATCTGGCCTTAGTCACCAGCCTATGTTTTTATCT
Unaligned ( gi|20 ): TTAATTGGCACATGTAAATAATTTCACTATTTTAACTG
Alignments
lowQualScore : 11 1 1 1 33333 1 1 2 1 1 777777777777777777 111 1 1 111 11 1111 111 22222222 11111 222 11111
lowQualScore : 88 5 5 5 00000 3 3 3 6 3 7 3 111111111111111111 0 3 777 3 2 2 7 0 0 0 333 3 11 8 8 9999 8 66 1 444 11111111 8 3 8 77 3 66666 6 6 6 6 6 88 6 3 333 4 8 4 11111 8 55 7 3 3 3 1 2 66 8 66 2 333 2 5 0
lowQualScore : .. . . . ..... . . . . . . . .................. . . ... . . . . . . . ... . .. . . .... . .. . ... ........ . . . .. . ..... . . . . . .. . . ... . . . ..... . .. . . . . . . .. . .. . ... . . .
lowQualScore : 00 0 5 0 77777 7 3 3 7 3 3 3 000000000000000000 2 2 222 2 5 0 0 0 0 8 000 8 00 0 0 2222 0 44 0 000 88888888 0 8 0 00 5 77777 7 7 7 7 7 88 7 2 000 4 9 4 11111 9 55 3 3 3 3 4 7 33 8 88 9 999 9 7 7
consensus : CCGAATGGTATTCTCGGAATTACCGGACAACTAGCAGTGTCTCCGCCATTGATCAACCGACTCAACTGGCCCACATTACA-G-AGCGCAGGGCCCAGGCC-AAAGCTACCA-TGATGTACAGGA-TTG-TGTACCAGAT-GATTG-CATCC-TCATAC--TC-AACTATCCTGGTACC-AACCATCTCTCCGAGGAG-GAACAAC-ATTACCTTCCTTGTGCCGNT-TGCCAGGACTTTAAC--ATATCAGAA-GTCCTTCT-TCCCAGACG--GGATC-AGGATCTGGAACTCACTTCCATCTGAAGC---TGTCAGTGAAAA---CATC-CATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGGA-TTTTAACCTTTTAATTGCA-CTGTAAAT-GTTTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
Reference ( family-3679 ) : CCGAATGGTATTCTCGGAATTACCGGACAACTAGCAGTGTCTCCGCCATTGATCAACCGACTCAACTGGCCCACATTACA-G-AGCGCAGGGCCCAGGCC-AAAGCTACCA-TGATGTACAGGA-TTG-TGTACCAGAT-GATTG-CATCC-TCATAC--TC-AACTATCCTGGTACC-AACCATCTCTCCGAGGAG-GAACAAC-ATTACCTTCCTTGTGCCGNT-TGCCAGGACTTTAAC--ATATCAGAA-GTCCTTCT-TCCCAGACG--GGATC-AGGATCTGGAACTCACTTCCATCTGAAGC---TGTCAGTGAAAA---CATC-CATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGGA-TTTTAACCTTTTAATTGCA-CTGTAAAT-GTTTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
gi|1 : CTGAATGGTATTCTCGGAATTACCGGACAACTAGCAGTGTCTCCGCCATTGATCAACCAACTCAACTGGCCCACATTA----------------CAGGCC-AAAGCTACCATTGATGTACAGGATTTGTTGTACCAGATGGATTGACATCCATCA-A----C-AACTATTCCTGTACCAAACCATCT-TCCAAGGAG-GGACACCTGTTACCTTCCTTGTGCCG-T-TGCCAGGACTTTAACATATATCAGAA-GTCCTTCTCTTCCAGAT---GGATCAAGGATCTGGAACTCAC-TGCATCTGAAGC---TGTCAGT-AAAA---CATC-CATAG-ATAGCTTCAAGTTCCCGATCCAGACCTA-----C-AC-TATTT-CGACCATAAG-GACCTGGATTTTTAACCTTTTAATTGCA-CTGTAAATAGTGTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGCTTGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
gi|10 : TT-TTTCTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTTGGCATC-AC-TT-ATGC-C-TGG-ACGAAAA--TACA-AGTTATAG--T-GT-A-T-GT-ACCGTA-A-CGGAAGAAGA
gi|11 : CC-ACATT-ATGCAA-CAGTACAAAAA--TACGC---CAGAGGCG-GTCA-T-GT-ACTATA-A-TGGAAGAAGAA
gi|12 : cacgagaggctctgccaatgTTTT-TTTTCCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACAGTTATAgaa
gi|14 : CCT-GTACC-CC----ATGCAC-TGGTTCGAAAA--TATACA---ATAG--T-GTCC-A-GT-ACCGGA-ACT-GAAGAAGAA
gi|16 : C-TGGTCCGAAA---TACACATTTATAGC-T-GTCA-TGGT-ACCGCATACCGGAAAAAGg
gi|17 : GCAC-TGGTTCGAAAA--TATACA---ATAG--T-GTCC-A-GT-ACCGGA-ACT-GAAGAAGAA
gi|18 : C-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCAGAAGAAGAg
gi|19 : AAAA--TACACAGTTATAG--T-GTCA-T-GT-ACCTTA-ACCGGAAGAAGAA
gi|2 : CCGAATGGTATTCTCG--ATTACCGGACAACTAGCAGTGT-TCCGCCAT-GATCAACCGACTCAACTGGCC-ACATTACA-GGAGCGCAGAGCCCAGGCC-AAAGCTACCA-TGATGTACAGGA-TTG-TATACCAGAT-GATTG--A-----CATACCATC-AACTATCCTGGTACC-A-CCATCTCTCCAAGG-G-GAACAAC-ATTACCTTCCTTGTGCCGTT-TGCCAGGACTT-AAC--ATATCAGAA-GTCCTTCT-TCCCAGATG--GGATC-AGGATCTGGAACTCACT-CCATCTGAAGC---TGTCAGTAAAAA---CATC-CATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGAA-TTTTAACCTTTTAATTGCA-CTGTAAA--ATTTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGC-C-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
gi|3 : ACACG-AGCGCAGGGCCCAAACTTAAAGCCATCA-TGCTGTACAGGAGTTG-TG------AT-CATTCTCATCT-TCATACGCTCTAACTGTCCTAG-ACC-TTCT-TTTCTCTGAAGGGCAAACAAC-AACAGCTTCCTCG-GCCAATATGCAAGGACATTGAC--TTACCAGAAAGTCCTTTT-TCCCACACC----AT--AGTATCTGGAACGCTCTTCCATCAGAAG-------CAGTGAATGCTCCATC-CCTGGTCTTGCTTCAAGCGCCAGATGCAGACC-A-----CTAC-CA-TC-AGGCCTTAGT-CACCAGG---CCTATGTTTTTATCTGCA-CTATA
gi|3 : ggccaatctatacGT--TCCT-GCACC-CC----ATACGC-TGGTACGAGAAATTACACA-ATATGG--T--CCA---GTAACCGGC-AACGGAAGAAGctatataatgtatatatatatagtatatatacatacatatataattttaaacttcacctgtaaataagttgttcctgcaccccatacgctggtacgagaaattacacaatatggtccagtaaccggcaacggaagaagcca
gi|4 : ggccaatctatacacacgagcgcagggcccaaacttaaagccatcatgctgtacaggagttgtgatcattctcatcttcatacgctctaactgtcctagaccttcttttctctgaagggcaaacaacaacagcttcctcggccaatatgcaaggacattgacttaccagaaagtcctttttcccacaccatagtatctggaacgctcttccatcagaagcagtgaatgctccatccctggtcttgcttcaagcgccagatgcagaccactaccatcaggccttagtcaccaggcctatgtttttatctgcactatactatataatgtatatatatatagtatatatacatacatatataattttaaacttcacctgtaaataagttACTATCCTGGTACC-AACCATCTCGCCAAGGAG-GAACAAC-ATTACCTTCCTTGTGCCGAT-TGCCAGGACTTTAAC--ATATCAGAA-GTCCTTCT-TCCCAGATG--GGATC-AGGATCTGGAACTCACTGCCATCTGAAGC---TGTCAGT-AAAA---CATC-CATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGGA-TTTTAACCTTTTAATTGCAGGGGTGGGTGGTTTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACAGTTATAG--T-GTCA-T-GT-ACCGTA-ACAGGAAGAAGcca
gi|5 : TGCCCCA-TGCCAGGACCTCCAC--ATACCAGCA-GTCCTTCT-TTCCAGACGCCATATC-AGGACTTGGAACTCACTTTCAAAGGACGCCGTTGCCAGTGG-------GTCTCAT-G-AAATCTTCAAG----AGATCCCGGGCAAGCGATC-ACGTA-CTGCAACCATAAATGACCT
gi|6 : ACCTTTTAATTGCA-CTGTAAAT-ATTTCGTTTTTCTTCAC-CAA-TTC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAAc
gi|7 : CCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAGG-GACCTGGA-TTTTAACAT----AT---A-C----------------TTTCTTCAC-CAA-CACATCAACATA-CGGACGT--CCTT-GCACC-AC-TGAATGCGC-TGGg
gi|8 : TT-TTTTTTTTCACTCAA-C-------TGTAACGGACGTGTCCTT-GTACC-AC-TT-ATGCGC-TGGTACGAAAAT-TATACATTTATAG--TGGTCATT-CT-GTTATA-ACCGGAAGAA
gi|9 : gTTT-TTTTTTTTCACGCAAACAC-----TGTAACGGACGT--CCTTTGTACCGAC-TT-ATGCGC-TGGTAC--AAA--TAT-CATTTATAG--T-GTCA-T-AT-A-CGTAGGACGGAAGAAGAAaga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CAAAGGACACCGTTGCCAGTGGGTCTCTTAAAATCTTCAAGAGATCACTGCAACCATAAAACCTCTCAA
Unaligned ( gi|15 ): TTCAAGCGCCAGATGCAGACCACTACCATCTGGCCTTAGTCACCAGCCTATGTTTTTATCT
Unaligned ( gi|20 ): TTAATTGGCACATGTAAATAATTTCACTATTTTAACTG
Alignments
lowQualScore : 11 1 1 1 33333 1 1 2 1 1 777777777777777777 111 1 1 111 11 1111 111 22222222 11111 222 11111
lowQualScore : 88 5 5 5 00000 3 3 3 6 3 7 3 111111111111111111 0 3 777 3 2 2 7 0 0 0 333 3 11 8 8 9999 8 66 1 444 11111111 8 3 8 77 3 66666 6 6 6 6 6 88 6 3 333 4 8 4 11111 8 55 7 3 3 3 1 2 66 8 66 2 333 2 5 0
lowQualScore : .. . . . ..... . . . . . . . .................. . . ... . . . . . . . ... . .. . . .... . .. . ... ........ . . . .. . ..... . . . . . .. . . ... . . . ..... . .. . . . . . . .. . .. . ... . . .
lowQualScore : 00 0 5 0 77777 7 3 3 7 3 3 3 000000000000000000 2 2 222 2 5 0 0 0 0 8 000 8 00 0 0 2222 0 44 0 000 88888888 0 8 0 00 5 77777 7 7 7 7 7 88 7 2 000 4 9 4 11111 9 55 3 3 3 3 4 7 33 8 88 9 999 9 7 7
consensus : CCGAATGGTATTCTCGGAATTACCGGACAACTAGCAGTGTCTCCGCCATTGATCAACCGACTCAACTGGCCCACATTACA-G-AGCGCAGGGCCCAGGCC-AAAGCTACCA-TGATGTACAGGA-TTG-TGTACCAGAT-GATTG-CATCC-TCATAC--TC-AACTATCCTGGTACC-AACCATCTCTCCGAGGAG-GAACAAC-ATTACCTTCCTTGTGCCGNT-TGCCAGGACTTTAAC--ATATCAGAA-GTCCTTCT-TCCCAGACG--GGATC-AGGATCTGGAACTCACTTCCATCTGAAGC---TGTCAGTGAAAA---CATC-CATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGGA-TTTTAACCTTTTAATTGCA-CTGTAAAT-GTTTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
Reference ( family-3679 ) : CCGAATGGTATTCTCGGAATTACCGGACAACTAGCAGTGTCTCCGCCATTGATCAACCGACTCAACTGGCCCACATTACA-G-AGCGCAGGGCCCAGGCC-AAAGCTACCA-TGATGTACAGGA-TTG-TGTACCAGAT-GATTG-CATCC-TCATAC--TC-AACTATCCTGGTACC-AACCATCTCTCCGAGGAG-GAACAAC-ATTACCTTCCTTGTGCCGNT-TGCCAGGACTTTAAC--ATATCAGAA-GTCCTTCT-TCCCAGACG--GGATC-AGGATCTGGAACTCACTTCCATCTGAAGC---TGTCAGTGAAAA---CATC-CATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGGA-TTTTAACCTTTTAATTGCA-CTGTAAAT-GTTTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
gi|1 : CTGAATGGTATTCTCGGAATTACCGGACAACTAGCAGTGTCTCCGCCATTGATCAACCAACTCAACTGGCCCACATTA----------------CAGGCC-AAAGCTACCATTGATGTACAGGATTTGTTGTACCAGATGGATTGACATCCATCA-A----C-AACTATTCCTGTACCAAACCATCT-TCCAAGGAG-GGACACCTGTTACCTTCCTTGTGCCG-T-TGCCAGGACTTTAACATATATCAGAA-GTCCTTCTCTTCCAGAT---GGATCAAGGATCTGGAACTCAC-TGCATCTGAAGC---TGTCAGT-AAAA---CATC-CATAG-ATAGCTTCAAGTTCCCGATCCAGACCTA-----C-AC-TATTT-CGACCATAAG-GACCTGGATTTTTAACCTTTTAATTGCA-CTGTAAATAGTGTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGCTTGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
gi|10 : TT-TTTCTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTTGGCATC-AC-TT-ATGC-C-TGG-ACGAAAA--TACA-AGTTATAG--T-GT-A-T-GT-ACCGTA-A-CGGAAGAAGA
gi|11 : CC-ACATT-ATGCAA-CAGTACAAAAA--TACGC---CAGAGGCG-GTCA-T-GT-ACTATA-A-TGGAAGAAGAA
gi|12 : cacgagaggctctgccaatgTTTT-TTTTCCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACAGTTATAgaa
gi|14 : CCT-GTACC-CC----ATGCAC-TGGTTCGAAAA--TATACA---ATAG--T-GTCC-A-GT-ACCGGA-ACT-GAAGAAGAA
gi|16 : C-TGGTCCGAAA---TACACATTTATAGC-T-GTCA-TGGT-ACCGCATACCGGAAAAAGg
gi|17 : GCAC-TGGTTCGAAAA--TATACA---ATAG--T-GTCC-A-GT-ACCGGA-ACT-GAAGAAGAA
gi|18 : C-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCAGAAGAAGAg
gi|19 : AAAA--TACACAGTTATAG--T-GTCA-T-GT-ACCTTA-ACCGGAAGAAGAA
gi|2 : CCGAATGGTATTCTCG--ATTACCGGACAACTAGCAGTGT-TCCGCCAT-GATCAACCGACTCAACTGGCC-ACATTACA-GGAGCGCAGAGCCCAGGCC-AAAGCTACCA-TGATGTACAGGA-TTG-TATACCAGAT-GATTG--A-----CATACCATC-AACTATCCTGGTACC-A-CCATCTCTCCAAGG-G-GAACAAC-ATTACCTTCCTTGTGCCGTT-TGCCAGGACTT-AAC--ATATCAGAA-GTCCTTCT-TCCCAGATG--GGATC-AGGATCTGGAACTCACT-CCATCTGAAGC---TGTCAGTAAAAA---CATC-CATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGAA-TTTTAACCTTTTAATTGCA-CTGTAAA--ATTTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGC-C-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
gi|3 : ACACG-AGCGCAGGGCCCAAACTTAAAGCCATCA-TGCTGTACAGGAGTTG-TG------AT-CATTCTCATCT-TCATACGCTCTAACTGTCCTAG-ACC-TTCT-TTTCTCTGAAGGGCAAACAAC-AACAGCTTCCTCG-GCCAATATGCAAGGACATTGAC--TTACCAGAAAGTCCTTTT-TCCCACACC----AT--AGTATCTGGAACGCTCTTCCATCAGAAG-------CAGTGAATGCTCCATC-CCTGGTCTTGCTTCAAGCGCCAGATGCAGACC-A-----CTAC-CA-TC-AGGCCTTAGT-CACCAGG---CCTATGTTTTTATCTGCA-CTATA
gi|3 : ggccaatctatacGT--TCCT-GCACC-CC----ATACGC-TGGTACGAGAAATTACACA-ATATGG--T--CCA---GTAACCGGC-AACGGAAGAAGctatataatgtatatatatatagtatatatacatacatatataattttaaacttcacctgtaaataagttgttcctgcaccccatacgctggtacgagaaattacacaatatggtccagtaaccggcaacggaagaagcca
gi|4 : ggccaatctatacacacgagcgcagggcccaaacttaaagccatcatgctgtacaggagttgtgatcattctcatcttcatacgctctaactgtcctagaccttcttttctctgaagggcaaacaacaacagcttcctcggccaatatgcaaggacattgacttaccagaaagtcctttttcccacaccatagtatctggaacgctcttccatcagaagcagtgaatgctccatccctggtcttgcttcaagcgccagatgcagaccactaccatcaggccttagtcaccaggcctatgtttttatctgcactatactatataatgtatatatatatagtatatatacatacatatataattttaaacttcacctgtaaataagttACTATCCTGGTACC-AACCATCTCGCCAAGGAG-GAACAAC-ATTACCTTCCTTGTGCCGAT-TGCCAGGACTTTAAC--ATATCAGAA-GTCCTTCT-TCCCAGATG--GGATC-AGGATCTGGAACTCACTGCCATCTGAAGC---TGTCAGT-AAAA---CATC-CATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGGA-TTTTAACCTTTTAATTGCAGGGGTGGGTGGTTTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACAGTTATAG--T-GTCA-T-GT-ACCGTA-ACAGGAAGAAGcca
gi|5 : TGCCCCA-TGCCAGGACCTCCAC--ATACCAGCA-GTCCTTCT-TTCCAGACGCCATATC-AGGACTTGGAACTCACTTTCAAAGGACGCCGTTGCCAGTGG-------GTCTCAT-G-AAATCTTCAAG----AGATCCCGGGCAAGCGATC-ACGTA-CTGCAACCATAAATGACCT
gi|6 : ACCTTTTAATTGCA-CTGTAAAT-ATTTCGTTTTTCTTCAC-CAA-TTC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAAc
gi|7 : CCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAGG-GACCTGGA-TTTTAACAT----AT---A-C----------------TTTCTTCAC-CAA-CACATCAACATA-CGGACGT--CCTT-GCACC-AC-TGAATGCGC-TGGg
gi|8 : TT-TTTTTTTTCACTCAA-C-------TGTAACGGACGTGTCCTT-GTACC-AC-TT-ATGCGC-TGGTACGAAAAT-TATACATTTATAG--TGGTCATT-CT-GTTATA-ACCGGAAGAA
gi|9 : gTTT-TTTTTTTTCACGCAAACAC-----TGTAACGGACGT--CCTTTGTACCGAC-TT-ATGCGC-TGGTAC--AAA--TAT-CATTTATAG--T-GTCA-T-AT-A-CGTAGGACGGAAGAAGAAaga
blockSeqs : . . . . CAGG A T . G . T . TCATCTTCATACGCTCT T TT A C A G C . ATA T . A . GCCA . TT T CGT GAATGCTC T A T TC T GCGAT T G . G T A G T TGG G T A ATCAA A GT G G A A A . AT G GC G TG A T
blockSeqs : CACG G . . . . . . ACATACCATC T AA A C G A . . TT T . . . GG . TG A . AAAAA . G . CG T . . . . . . A . T TA . G . . A . T . . . G . T G C . TT . G
blockSeqs : . A . C A . . . AT C . . . GG . TT T . AAAA . A . TC A . . . . . . A . G A . . . . . . . . . . A . . T . . T . .
blockSeqs : CA . . . . C . T G . GG . . . . T . . . . . . . . T . . . . . . . . . . . A . . T . . T . .
blockSeqs : . . . . . . . . . . . . . . . . . . . G . . G . . A . .
blockSeqs : . . . . . . . . . . G . . T . . A . .
blockSeqs : . . . . . . . . . . G . . G . . T . .
blockSeqs : . . . . . . . . . . G . . T . . T . .
blockSeqs : . . . . . G . . T . . T . .
blockSeqs : . . . . G . . T . . T . .
blockSeqs : . . . . . . . . . T . .
blockSeqs : . . . . . . T . .
blockSeqs : . . . . . . . .
blockSeqs : . . .
blockSeqCons : NT* ** GN** TT GAAN**** A* G**
originalCons : CCGAATGGTATTCTCGGAATTACCGGACAACTAGCAGTGTCTCCGCCATTGATCAACCGACTCAACTGGCCCACATTACA-G-AGCGCAGGGCCCAGGCC-AAAGCTACCA-TGATGTACAGGA-TTG-TGTACCAGAT-GATTG-CATCC-TCATAC--TC-AACTATCCTGGTACC-AACCATCTCTCCGAGGAG-GAACAAC-ATTACCTTCCTTGTGCCGNT-TGCCAGGACTTTAAC--ATATCAGAA-GTCCTTCT-TCCCAGACG--GGATC-AGGATCTGGAACTCACTTCCATCTGAAGC---TGTCAGTGAAAA---CATC-CATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGGA-TTTTAACCTTTTAATTGCA-CTGTAAAT-GTTTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
finalCons : CCGAATGGTATTCTCGGAATTACCGGACAACTAGCAGTGTCTCCGCCATTGATCAACCGACTCAACTGGCCCACATTACA-G-AGCGCAGGGCCCAGGCC-AAAGCTACCA-TGATGTACAGGA-TTG-TGTACCAGAT-GATTG-CATCC-TCATAC--TC-AACTATCCTGGTACC-AACCATCTCTCCGAGGAG-GAACAAC-ATTACCTTCCTTGTGCCGNT-TGCCAGGACTTTAAC--ATATCAGAA-GTCCTTCT-TCCCAGACGN--GATC-AGGATCTGGAACTCACTTCCATCTGAAGC---TGTCAGTGAAN----CATC-CATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGGA-TTTTAACCTTTTAATTGCA-CTGTAAAG--TTTT-TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CAAAGGACACCGTTGCCAGTGGGTCTCTTAAAATCTTCAAGAGATCACTGCAACCATAAAACCTCTCAA
Unaligned ( gi|15 ): TTCAAGCGCCAGATGCAGACCACTACCATCTGGCCTTAGTCACCAGCCTATGTTTTTATCT
Unaligned ( gi|20 ): TTAATTGGCACATGTAAATAATTTCACTATTTTAACTG
Alignments
lowQualScore : 11 1 1 1 33333 1 1 2 1 1 777777777777777777 111 1 1 111 11 222 1 111 11111 111 11111 11111
lowQualScore : 88 5 5 5 00000 3 3 3 6 3 7 3 111111111111111111 0 3 777 3 2 2 7 0 0 0 333 3 11 8 8 777 8 0 1 444 8 1 0 3 8 77 3 66666 6 6 6 6 6 88 111 44444 66 8 4 11111 8 55 7 3 3 3 1 2 66 8 66 2 333 2 5 0
lowQualScore : .. . . . ..... . . . . . . . .................. . . ... . . . . . . . ... . .. . . ... . . . ... . . . . . .. . ..... . . . . . .. ... ..... .. . . ..... . .. . . . . . . .. . .. . ... . . .
lowQualScore : 00 0 5 0 77777 7 3 3 7 3 3 3 000000000000000000 2 2 222 2 5 0 0 0 0 8 000 8 00 0 0 666 0 6 0 000 0 0 8 8 0 00 5 77777 7 7 7 7 7 88 777 00000 11 9 4 11111 9 55 3 3 3 3 4 7 33 8 88 9 999 9 7 7
consensus : CCGAATGGTATTCTCGGAATTACCGGACAACTAGCAGTGTCTCCGCCATTGATCAACCGACTCAACTGGCCCACATTACA-G-AGCGCAGGGCCCAGGCC-AAAGCTACCA-TGATGTACAGGA-TTG-TGTACCAGAT-GATTG-CATCC-TCATAC--TC-AACTATCCTGGTACC-AACCATCTCTCCGAGGAG-GAACAAC-ATTACCTTCCTTGTGCCGNT-TGCCAGGACTTTAAC--ATATCAGAA-GTCCTTCT-TCCCAGACG--GGATC-AGGATCTGGAACTCACTTCCATCTGAAGC---TGTCAGT-AAAACATCCATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGGA-TTTTAACCTTTTAATTGCA---CTGTAA--AGTTTT--TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
Reference ( family-3679 ) : CCGAATGGTATTCTCGGAATTACCGGACAACTAGCAGTGTCTCCGCCATTGATCAACCGACTCAACTGGCCCACATTACA-G-AGCGCAGGGCCCAGGCC-AAAGCTACCA-TGATGTACAGGA-TTG-TGTACCAGAT-GATTG-CATCC-TCATAC--TC-AACTATCCTGGTACC-AACCATCTCTCCGAGGAG-GAACAAC-ATTACCTTCCTTGTGCCGNT-TGCCAGGACTTTAAC--ATATCAGAA-GTCCTTCT-TCCCAGACG--NGATC-AGGATCTGGAACTCACTTCCATCTGAAGC---TGTCAGT-GAANCATCCATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGGA-TTTTAACCTTTTAATTGCA---CTGTAA--AGTTTT--TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
gi|1 : CTGAATGGTATTCTCGGAATTACCGGACAACTAGCAGTGTCTCCGCCATTGATCAACCAACTCAACTGGCCCACATTA----------------CAGGCC-AAAGCTACCATTGATGTACAGGATTTGTTGTACCAGATGGATTGACATCCATCA-A----C-AACTATTCCTGTACCAAACCATCT-TCCAAGGAG-GGACACCTGTTACCTTCCTTGTGCCG-T-TGCCAGGACTTTAACATATATCAGAA-GTCCTTCTCTTCCAGATG---GATCAAGGATCTGGAACTCAC-TGCATCTGAAGC---TGTCAGT-AAAACATCCATAG-ATAGCTTCAAGTTCCCGATCCAGACCTA-----C-AC-TATTT-CGACCATAAG-GACCTGGATTTTTAACCTTTTAATTGCA---CTGTAAATAGTGTT--TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGCTTGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
gi|10 : TT--TTTCTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTTGGCATC-AC-TT-ATGC-C-TGG-ACGAAAA--TACA-AGTTATAG--T-GT-A-T-GT-ACCGTA-A-CGGAAGAAGA
gi|11 : CC-ACATT-ATGCAA-CAGTACAAAAA--TACGC---CAGAGGCG-GTCA-T-GT-ACTATA-A-TGGAAGAAGAA
gi|12 : cacgagaggctctgccaatgTTTT--TTTTCCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACAGTTATAgaa
gi|14 : CCT-GTACC-CC----ATGCAC-TGGTTCGAAAA--TATACA---ATAG--T-GTCC-A-GT-ACCGGA-ACT-GAAGAAGAA
gi|16 : C-TGGTCCGAAA---TACACATTTATAGC-T-GTCA-TGGT-ACCGCATACCGGAAAAAGg
gi|17 : GCAC-TGGTTCGAAAA--TATACA---ATAG--T-GTCC-A-GT-ACCGGA-ACT-GAAGAAGAA
gi|18 : C-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCAGAAGAAGAg
gi|19 : AAAA--TACACAGTTATAG--T-GTCA-T-GT-ACCTTA-ACCGGAAGAAGAA
gi|2 : CCGAATGGTATTCTCG--ATTACCGGACAACTAGCAGTGT-TCCGCCAT-GATCAACCGACTCAACTGGCC-ACATTACA-GGAGCGCAGAGCCCAGGCC-AAAGCTACCA-TGATGTACAGGA-TTG-TATACCAGAT-GATTG--A-----CATACCATC-AACTATCCTGGTACC-A-CCATCTCTCCAAGG-G-GAACAAC-ATTACCTTCCTTGTGCCGTT-TGCCAGGACTT-AAC--ATATCAGAA-GTCCTTCT-TCCCAGATG--GGATC-AGGATCTGGAACTCAC-TCCATCTGAAGC---TGTCAGTAAAAACATCCATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGAA-TTTTAACCTTTTAATTGCA---CTGTAA--AATTTT--TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGC-C-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAA
gi|3 : ACACG-AGCGCAGGGCCCAAACTTAAAGCCATCA-TGCTGTACAGGAGTTG-TG------AT-CATTCTCATCT-TCATACGCTCTAACTGTCCTAG-ACC-TTCT-TTTCTCTGAAGGGCAAACAAC-AACAGCTTCCTCG-GCCAATATGCAAGGACATTGAC--TTACCAGAAAGTCCTTTT-TCCCACACC----AT--AGTATCTGGAACGCTCTTCCATCAGAAGC---AGTGAAT-GCTCCATCCCTGGTCTTGCTTCAAGCGCCAGATGCAGACC-A-----CTAC-CA-TC-AGGCCTTAGT-CACCAGG---CCTATGTTTTTATCTGCA---CTATA
gi|3 : ggccaatctatacGT--TCCT-GCACC-CC----ATACGC-TGGTACGAGAAATTACACA-ATATGG--T--CCA---GTAACCGGC-AACGGAAGAAGctatataatgtatatatatatagtatatatacatacatatataattttaaacttcacctgtaaataagttgttcctgcaccccatacgctggtacgagaaattacacaatatggtccagtaaccggcaacggaagaagcca
gi|4 : ggccaatctatacacacgagcgcagggcccaaacttaaagccatcatgctgtacaggagttgtgatcattctcatcttcatacgctctaactgtcctagaccttcttttctctgaagggcaaacaacaacagcttcctcggccaatatgcaaggacattgacttaccagaaagtcctttttcccacaccatagtatctggaacgctcttccatcagaagcagtgaatgctccatccctggtcttgcttcaagcgccagatgcagaccactaccatcaggccttagtcaccaggcctatgtttttatctgcactatactatataatgtatatatatatagtatatatacatacatatataattttaaacttcacctgtaaataagttACTATCCTGGTACC-AACCATCTCGCCAAGGAG-GAACAAC-ATTACCTTCCTTGTGCCGAT-TGCCAGGACTTTAAC--ATATCAGAA-GTCCTTCT-TCCCAGATG--GGATC-AGGATCTGGAACTCACTGCCATCTGAAGC---TGTCAGT-AAAACATCCATAG-ATAGCTTCAAGTCCCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAAG-GACCTGGA-TTTTAACCTTTTAATTGCAGGGGTGGGT--GGTTTT--TTTTTCTTCAC-CAA-CAC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACAGTTATAG--T-GTCA-T-GT-ACCGTA-ACAGGAAGAAGcca
gi|5 : TGCCCCA-TGCCAGGACCTCCAC--ATACCAGCA-GTCCTTCT-TTCCAGACGCCATATC-AGGACTTGGAACTCACTTTCAAAGGACGCCGTTGCCAGT-GGGTC--TCAT-G-AAATCTTCAAG----AGATCCCGGGCAAGCGATC-ACGTA-CTGCAACCATAAATGACCT
gi|6 : ACCTTTTAATTGCA---CTGTAA--ATATTTCGTTTTTCTTCAC-CAA-TTC-----TGTA-CGGACGT--CCTT-GCACC-AC-TT-ATGCGC-TGGTACGAAAA--TACACATTTATAG--T-GTCA-T-GT-ACCGTA-ACCGGAAGAAGAAc
gi|7 : CCAGATCCAGACCTA-----C-AC-TA-TT-CGACCATAGG-GACCTGGA-TTTTAACAT----AT---A---C-----------------TTTCTTCAC-CAA-CACATCAACATA-CGGACGT--CCTT-GCACC-AC-TGAATGCGC-TGGg
gi|8 : TT--TTTTTTTTCACTCAA-C-------TGTAACGGACGTGTCCTT-GTACC-AC-TT-ATGCGC-TGGTACGAAAAT-TATACATTTATAG--TGGTCATT-CT-GTTATA-ACCGGAAGAA
gi|9 : gTTT--TTTTTTTTCACGCAAACAC-----TGTAACGGACGT--CCTTTGTACCGAC-TT-ATGCGC-TGGTAC--AAA--TAT-CATTTATAG--T-GTCA-T-AT-A-CGTAGGACGGAAGAAGAAaga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CAAAGGACACCGTTGCCAGTGGGTCTCTTAAAATCTTCAAGAGATCACTGCAACCATAAAACCTCTCAA
Unaligned ( gi|15 ): TTCAAGCGCCAGATGCAGACCACTACCATCTGGCCTTAGTCACCAGCCTATGTTTTTATCT
Unaligned ( gi|20 ): TTAATTGGCACATGTAAATAATTTCACTATTTTAACTG