lowQualScore : 1111111111111111 2222222222222
lowQualScore : 1111 11 11 111 11 111 5555555555555 1 1 1 4444444444444444 1 2222222222222 11 1 11 2
lowQualScore : 66 0000 5 5 5 4 4 66 11 4 777 88 4 4 8 4 4 4 888 9 4 33 5 5 5 222 99 5 5 5 000 33 2222222222222 6 99 6 0 7 6 5 0 8 0 1 5555555555555555 3 4 5 4 0000000000000 22 8 0 1 8 8 11 5 5 6 7 3 5
lowQualScore : .. .... . . . . . .. .. . ... .. . . . . . . ... . . .. . . . ... .. . . . ... .. ............. . .. . . . . . . . . . ................ . . . . ............. .. . . . . . .. . . . . . .
lowQualScore : 99 6666 0 0 0 4 4 11 11 4 888 55 0 4 9 4 4 4 999 1 0 00 0 0 0 999 66 0 0 7 000 99 4444444444444 0 22 7 0 0 0 0 2 2 6 4 2222222222222222 5 2 0 0 0000000000000 88 0 8 4 0 0 00 0 0 0 8 2 0
consensus : GGGTTTC--T----GCT-CA-T-CC-ACA-T--GCGGGG-TTTCA-AT---TCTGAAGC-GAAG-A-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAG-TA--AAAGTTGAAATAACG-TATACAAAAGTAGG-TCAT-GGTAAGT-AA--AAGTTGAAATAACG-TATA-CAAA-AACAA---TNTATTC-------A-----TAATTATGCTCACGGGTTGTAAGGA--TAT-ATAAGCCATCTACATTTCACTCCAAAACTTCTGAGCAAGCTTTGCTTTCGCCAAACACCTCTGCACTGTTTCGACAACTGGAGAATATTCGTCAAATTTACATGTTTTTTATTCTATATCTTTTGAAATATGGCTT-TTGGAAATTTCTNTTCGGTGAATCAAATTCTGCTTNCGTATAGAAGTCAGAATATGACATTTTGTATTGTTGAGAGG-CATTGGTTTTT-TG-A--AAAAATCCTATTTTGTGTCGGTNAATACATGTGACTACCGGGGTTTC
Reference ( gi|2 ) : GGGTTTC--T----GCT-CA-T-CC-ACA-T--GCGGGG-TTTCA-AT---TCTGAAGC-AAAG-A-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAG-TA--GAAGTTGAAATAACG-TATATNAAAGTAGG-TCAT-GGTAAGT-AG--AAGTTGAAATGACG-TATA-CAAA-AACAA---TATATTC-------A-----TAATTATGCTCACGGGTTGTAAAGA--TAT-ATAAGCCATCTACATTTCACGCCAAAACTTCTGAGCAAGCTTTGCTATCACCAAACACCTCTACACTGTTTCGACAATTGGAGAATATTCGTCAAATTTACATGTTTTTTATTCTATATCTTTT-------------TTGGAAATTTCTTTTCGGTGAATCAAATTATGCTTACGTATAGAAGTCAGAA-------------ATTGTGAAGAGG-CATTGTTTTTT-TG-A--AACAATCCTATTCTGTGCCGGTCAGTACCTGTGACTACCGGGGTTTC
gi|1 : GGGTTTTCTT----GCT-CA-T-CC-ACAAT--GCGGGG-TTTCA-AT---TCTGAAGC-GAAGGA-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAGTTA--AAAGTTGAAA-AACG-TATACAAAA
gi|5 : cacatgcGGGTTTC--T----GCT-CA-T-CC-ACA-T--GCGGGG-TTTCA-AT---TCTGAAGC-GAAG-A-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAG-TA--AAAGTTGAAATAACG-TATACAAAAaaatatatttcaccaaaataattatgttcacgggttgtaaggaaatattataagccatctacatttcacgccaaaacttctgagcaagctttgctttcatcaaacacctctgcactgtttggagaatattcgtcaaatttacatattttttattctatatcttttaagattagcttttttgaaatttctttttggtgaatcagattctgcttacgtataaaagtcagaatatgacattttgtattgtggagaggctttggttttttgaaaaaaatcctattttgtgtcggtcagtacctgtgactaccggggtttcattt
gi|7 : acatgcgGGGTTTC--T----GCT-CA-T-CT-ACA-T--GCGGG--TTTCA-AT---TCTGAAGC-GAAG-A-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAG-TA--AAAGTTGAAATAATG-TATACAAAAacaatttattcacaaaataattatgctcacgggttgtaaggatatataagccatctacatttcactccaaaacttctgagcaagctttgctttcgccaaacacctctgcactgtttcgacaactggagaatatttgtcaaatttacatgttttttattctatatcttttgaaata
gi|12 : atgcgGGGTTTC--T----GTT-CA-T-CC-ACA-T--GCGGG--TTACA-AT---TCTGAAGC-GAAG-A-AACGCATCGAAAAGTAGG-TC-C-TGGTAAG-TA--AAAGTTGAAATAACG-TATAacaatttattcacaaaataattatgctcacgggttgtaaggatacataagccatctacatttcaaaacttctgagca
gi|10 : atgcgGGGTTTC--T----GCT-CA-T-CCCACA-T--GCGG---TTTCA-AT---TCTGAAGC-GAAG-A-AAAGCGTCGAAAA--AGG-TC-A-TGGTAAG-TA--AAAGTTGAAA-AACG-TA
gi|9 : agggtcacatgcGGGTTTC--T----GCT-CA-TCCC-ACA-TGAGCGGGGCTTTCAGAT---TCTGAAGCGAAAG-ACAAAGCGTCG-AAAGTAGGATC-ATTGGTAAG-TAATAAAGTTGAAAT-ACGCTATACCAAAgcaaaacaatttattcac
gi|14 : agggtcacatgcgGGGTTTC--T----GCT-CA-T-GC-ACA-T--GCGGGG-TTTCA-AT---TCTGAAGC-GAAG-caacaactttaattcacaagattaatatgctt
gi|8 : ggtcacatgcgGGGTTTC--TTCCTGCTTCAGT-CC-CAA-T--GCGGGT-TTCCA-AT---TCTGAAGC-GAGA-A-AAGGCGTCGAAGTGAAGGCTCAA-TGGTAA--T----AAATTGAAATAA----ATATAAA
gi|3 : tcaccgtgttacagggtcacactgcgC-ACA-T--GCGGGG-TTTCA-ATAAAT-TGATGC-GAAG-A-CAAGCGGAGAAAAGTAGG-TC-A-TAGTAAG-TA--AAAGTTGAAATAACG-TATAtaaccataccaggaaaattatgagttgtttgagggta
gi|13 : cagggtTGAAGC-GAAG-A-AAGGCGCAGAAAAGTAGG-TC-A-TGGTAAG-TA--AACGTGGAAAAAAcaaaaacaatatatacacaatataataatgctcacgggttgtaaggatatataaaccatctacgtttcactccaaaacttctgagcaagatttgctttcaccaaacacctctgcgttgtttcgataactgaagaatgttcgtcaaatttccaagttttttatcctatatctttcgaaatttgtttgcgatggatcaaattctactttcccataaaagtcagaatataactttttgtattgttcagaggcattggttttttgaagaaaaatcatattttg
gi|1 : t--GAAG--GAAA-AGCG-TCGA--AAAGTAGG-TCAT-GGTAAGTTAA--AAGTTGAAA-AACG-TATA-CAAA-AA-AA---TATATTTCACCAAAA-----TAATTATGTTCACGGGTTGTAAGGAAATATTATAAGCCATCTACATTTCACGCCAAAACTTCTGAGCAAGCTTTGCTTTCATCAAACACCTCTGCACTGTTT--------GGAGAATATTCGTCAAATTTACATATTTTTTATTCTATATCTTTTAAGATTAGCTTT-TTTGAAATTTCTTTTTGGTGAATCAGATTCTGCTTACGTATAAAAGTCAGAATATGACATTTTGTATTGTGGAGAGG-CTTTGGTTTTT-TGAA--AAAAATCCTATTTTGTGTCGGTCAGTACCTGTGACTACCGGGGTTTCaagttcaaaaacaataaatttacaagaaat
gi|12 : cacatgcgggttttcttgctcatccacaatgcggggtttcaattctgaagc--GAAGC-GAAGAAACG-CATCGAAAAGTAGG-TCCT-GGTAAGT-AA--AAGTTGAAATAACG-TATA-attt
gi|3 : atgcggggtttctgttcatccacatgcgggttacaattctAAAGTAGG-TCAT-AGTAAGT-AA--AAGTTGAAATAACG-TATA-CAAA-AACAA---TATATAC-------ACAATATAATAATGCTCACGGGTTGTAAGGA--TAT-ATAAACCATCTACGTTTCACTCCAAAACTTCTGAGCAAGATTTGCTTTCACCAAACACCTCTGCGTTGTTTCGATAACTGAAGAATGTTCGTCAAATTTCCAAGTTTTTTATCCTATATCTTTC----------------GAAATTTGTTTGCGATGGATCAAATTCTACTTTCCCATAAAAGTCAGAATATAACTTTTTGTATTGTTCAGAGG-CATTGGTTTTT-TG-AAGAAAAATCATATTTTG
gi|5 : cagggtcacatgcggggtttcaataaattgatgcgaagacaagcggagaAAAGTAGG-TCAT-GGTAAGT-AA--AAGTTGAAATAACG-TATA-CAAA-AACAA---TTTATTC-------ACAAAATAATTATGCTCACGGGTTGTAAGGA--TAT-ATAAGCCATCTACATTTCACTCCAAAACTTCTGAGCAAGCTTTGCTTTCGCCAAACACCTCTGCACTGTTTCGACAACTGGAGAATATTTGTCAAATTTACATGTTTTTTATTCTATATCTTTT----------------GAAAT
gi|7 : acatgcggggtttctgctcatccacatgcggggtttcaattctgaagcgaagaaaagcgtcgaAAAGTAGG-TCAT-GGTAAGT-AA--AAGTTGAAATAATG-TATA-CAAA-AACAA---TTTATTCACAAA--A-----TAATTATGCTCACGGGTTGTAAGGA--TAC-ATAAGCCATCTACATTT-----CAAAACTTCTGAGCAa
gi|9 : atgcggggtttctgctcatctacatgcgggtttcaattctgaagcgaagaaaagcgtcgaAAAGTAGGATCATTGGTAAGT-AATAAAGTTGAAAT-ACGCTATACCAAACAACAACTTTA-ATTC-------A-----CAA
gi|13 : agggtcacatgcggggtttctgctcatcccacatgagcggggctttcagattctgaagcgaaagacaaagcgtcgAAAGTAGG-TCAT-GGTAAGT-AA--ACGTGGAAA-AAAA-AGTT-CAAA-AACAA---TAAATTT-------A-----CAAgattaatatgctt
gi|10 : ttgaagcgaagaaaggcgcagaAGG-TCAT-GGTAAGT-AA--AAGTTGAAA-AACG-TA-G-C-AA-AACAA---TTTATTC-------A-----gaaat
gi|4 : agggtcacatgcgggtttctgctcatcccacatgcggtttcaattctgaagcgaagaaaagcgtcgaaaaATTATGCTCACGGGTTGTAAGGA--TAT-ATAAGCCATCTACATTTCACTCCAAAACTTCTGAG-AAGCTTTGCTTTCGCCAAACACCTCTGCACTGTTT-GACAACTGGAGAATATTCGTCAAATTTACATGTTTTTTATTCTATATCTTTTGAAATATAGCTTATTGGAAATTTCTGTTTGATGAATCAAATTCTGCTTACGTATAGAAGTCAGAATATGACATTTTGTATTGTGGAGAGG-CATTGGTTTTT-TA-A--AA-AATC---TTTTGTGTCGGTCAGTACCTGTGACTACCGGGGTTTCc
gi|16 : TGCTCACGGGTTGTAAGGA--TAT-ATTAGCCATATACATTaa
gi|6 : AGAATGTTCGTCAAATTTCCAAGTTTTTTATTCTATATCTTTTGAAATATGGCTTTTTGGACATTTCTATTAAGTGAATCAAATTCTGCGTTCGTATAGAAGTCAGAATATGATATTCTATGTTGTTGAGAGGTCA-TACTTTAT-CG-A--AAAAATCCTATTTTGTGAGGGTTAATACATGTGACTACTGGGGTTTC
gi|11 : ATAGAAGTCAGAATATAACATTTTGTGTTGTTGAGAGG-CGTTGCTTTTTATG-A--AA-AATCCTATTTTGTGTCGGTAAATACACGTGACTACCGGGGATTaattc
gi|15 : aATTTTGTGTCGGTAAATACATGTGACTACCGCGATTTCactttc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): ATACAGGGTCACATGCGGGGTTTCTGCTC
Alignments
lowQualScore : 11111 3333333333333333333 222222222 1111
lowQualScore : 66 9999 4 4 4 4 4 55 99 4 777 3 3 4 8 4 4 3 55 4 4 0 5 5 77 1 1 00 1 5 00000 1 5 0000000000000000000 77 5 3 55 1 222222222 8 0 3 1 1 3 6 2 6 5555 2 1 3
lowQualScore : .. .... . . . . . .. .. . ... . . . . . . . .. . . . . . .. . . .. . . ..... . . ................... .. . . .. . ......... . . . . . . . . . .... . . .
lowQualScore : 11 4444 4 4 4 0 0 55 00 0 000 6 6 0 0 0 0 6 00 6 0 7 7 7 99 3 3 33 7 7 44444 4 7 9999999999999999999 99 7 0 88 0 111111111 0 6 8 4 0 0 7 5 7 0000 5 0 0
consensus : GGGTTTC--T----GCT-CA-T-CC-ACA-T--GCGGGG-TTTCA-AT---TCTGAAGCG-AAG-A-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAG-TA--AAAGTTGAAATAACG-TATACAAAAGTAGG-TCAT-GGTAAGTAA--AAGTTGAAATAACG-TAT---A-CAAA-AACAATTT--ATTC-----A-----TAATTATGCTCACGGGTTGTAAGG--ATA-TATAAGCCATCTACATTTCACTCCAAAACTTCTGAGCAAGCTTTGCTTTCGCCAAACACCTCTGCACTGTTTCGACAACTGGAGAATATTCGTCAAATTTACATGTTTTTTATTCTATATCTTTTGAAATATGGC-TT-TT-GGAAATTTCTNTTCGGTGAATCAAATTCTGCTTACGTATAGAAGTCAGAATATGACATTTTGTATTGTNGAGAGG-CATTGNTTTTT-TG-A--AAAAATCCTATTTTGTGTCGGTCAGTACNTGTGACTACCGGGGTTTC
Reference ( family-363 ) : GGGTTTC--T----GCT-CA-T-CC-ACA-T--GCGGGG-TTTCA-AT---TCTGAAGCG-AAG-A-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAG-TA--AAAGTTGAAATAACG-TATACAAAAGTAGG-TCAT-GGTAAGTAA--AAGTTGAAATAACG-TAT---A-CAAA-AACAATNT--ATTC-----A-----TAATTATGCTCACGGGTTGTAAGG--ATA-TATAAGCCATCTACATTTCACTCCAAAACTTCTGAGCAAGCTTTGCTTTCGCCAAACACCTCTGCACTGTTTCGACAACTGGAGAATATTCGTCAAATTTACATGTTTTTTATTCTATATCTTTTGAAATATGGC-TT-TT-GGAAATTTCTNTTCGGTGAATCAAATTCTGCTTNCGTATAGAAGTCAGAATATGACATTTTGTATTGTTGAGAGG-CATTGGTTTTT-TG-A--AAAAATCCTATTTTGTGTCGGTNAATACATGTGACTACCGGGGTTTC
gi|1 : GGGTTTTCTT----GCT-CA-T-CC-ACAAT--GCGGGG-TTTCA-AT---TCTGAAGCG-AAGGA-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAGTTA--AAAGTTGAAA-AACG-TATACAAAA----------------------------AAATA----TATTTCA-CCAA-AATAAT-T--AT--------------------GTTCACGGGTTGTAAGGAAATATTATAAGCCATCTACATTTCACGCCAAAACTTCTGAGCAAGCTTTGCTTTCATCAAACACCTCTGCACTGTT--------TGGAGAATATTCGTCAAATTTACATATTTTTTATTCTATATCTTTTAAGAT-TAGCTTT-TT-TGAAATTTCTTTTTGGTGAATCAGATTCTGCTTACGTATAAAAGTCAGAATATGACATTTTGTATTGTGGAGAGG-CTTTGGTTTTT-TGAA--AAAAATCCTATTTTGTGTCGGTCAGTACCTGTGACTACCGGGGTTTC
gi|10 : cacatgcGGGTTTC--T----GCT-CA-T-CCCACA-T--GCGG---TTTCA-AT---TCTGAAGCG-AAG-A-AAAGCGTCGAAAA--AGG-TC-A-TGGTAAG-TA--AAAGTTGAAA-AACG-TA-GCAAAAattt
gi|11 : agggtcacatgcATAGAAGTCAGAATATAACATTTTGTGTTGTTGAGAGG-CGTTGCTTTTTATG----AAAAATCCTATTTTGTGTCGGTAAATACACGTGACTACCGGGGATTcaatttattcac
gi|12 : aGGGTTTC--T----GTT-CA-T-CC-ACA-T--GCGGG--TTACA-AT---TCTGAAGCG-AAG-A-AACGCATCGAAAAGTAGG-TC-C-TGGTAAG-TA--AAAGTTGAAATAACG-TATAactttc
gi|13 : atgcgTGAAGCG-AAG-A-AAGGCGCAGAAAAGTAGG-TC-A-TGGTAAG-TA--AACGTGGAAAAAA
gi|13 : tAAAAGTAGG-TCAT-GGTAAGTAA--ACGTGGAAA-AAAA-AGT---T-CAAA-AACAATAA--ATTT-----A-----CAAaagttcaaaaacaataaatttacaagaaat
gi|14 : ttgaagcgaagaaaggcgcagGGGTTTC--T----GCT-CA-T-GC-ACA-T--GCGGGG-TTTCA-AT---TCTGAAGCG-AAG-gaaat
gi|15 : ggtcacatgcgATTTTGTGTCGGTAAATACATGTGACTACCGCGATTTC
gi|16 : cTGCTCACGGGTTGTAAGG--ATA-TATTAGCCATATACATTatttct
gi|2 : GGGTTTC--T----GCT-CA-T-CC-ACA-T--GCGGGG-TTTCA-AT---TCTGAAGCA-AAG-A-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAG-TA--GAAGTTGAAATAACG-TATATNAAAGTAGG-TCAT-GGTAAGTAG--AAGTTGAAATGACG-TAT---A-CAAA-AACAATAT--ATTC-----A-----TAATTATGCTCACGGGTTGTAAAG--ATA-TATAAGCCATCTACATTTCACGCCAAAACTTCTGAGCAAGCTTTGCTATCACCAAACACCTCTACACTGTTTCGACAATTGGAGAATATTCGTCAAATTTACATGTTTTTTATTCTATATCTTTT--------------TT-GGAAATTTCTTTTCGGTGAATCAAATTATGCTTACGTATAGAAGTCAGAA-------------ATTGTGAAGAGG-CATTGTTTTTT-TG-A--AACAATCCTATTCTGTGCCGGTCAGTACCTGTGACTACCGGGGTTTC
gi|3 : C-ACA-T--GCGGGG-TTTCA-ATAAAT-TGATGCG-AAG-A-CAAGCGGAGAAAAGTAGG-TC-A-TAGTAAG-TA--AAAGTTGAAATAACG-TATACAA------------------------------AAACAATA-TAT---A-C-----ACAAT-------------A-----TAATAATGCTCACGGGTTGTAAGG--ATA-TATAAACCATCTACGTTTCACTCCAAAACTTCTGAGCAAGATTTGCTTTCACCAAACACCTCTGCGTTGTTTCGATAACTGAAGAATGTTCGTCAAATTTCCAAGTTTTTTATCCTATATCTTTCGAAATTTG----T-TT-G------------CGATGGATCAAATTCTACTTTCCCATAAAAGTCAGAATATAACTTTTTGTATTGTTCAGAGG-CATTGGTTTTT-TG-AAGAAAAATCATATTTTG
gi|4 : cagggtATTATGCTCACGGGTTGTAAGG--ATA-TATAAGCCATCTACATTTCACTCCAAAACTTCTGAG-AAGCTTTGCTTTCGCCAAACACCTCTGCACTGTTT-GACAACTGGAGAATATTCGTCAAATTTACATGTTTTTTATTCTATATCTTTTGAAATATAGC-TTATT-GGAAATTTCTGTTTGATGAATCAAATTCTGCTTACGTATAGAAGTCAGAATATGACATTTTGTATTGTGGAGAGG-CATTGGTTTTT-T--A--AAAAATC---TTTTGTGTCGGTCAGTACCTGTGACTACCGGGGTTTC
gi|5 : GGGTTTC--T----GCT-CA-T-CC-ACA-T--GCGGGG-TTTCA-AT---TCTGAAGCG-AAG-A-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAG-TA--AAAGTTGAAATAACG-TATACAAAAaa
gi|5 : acatgcgAAAAGTAGG-TCAT-GGTAAGTAA--AAGTTGAAATAACG-TAT---A-CAAA-AACAATTT--ATTC-----ACAAAATAATTATGCTCACGGGTTGTAAGG--ATA-TATAAGCCATCTACATTTCACTCCAAAACTTCTGAGCAAGCTTTGCTTTCGCCAAACACCTCTGCACTGTTTCGACAACTGGAGAATATTTGTCAAATTTACATGTTTTTTATTCTATATCTTTTGAAATAacaatttattcacaaaataattatgctcacgggttgtaaggatatataagccatctacatttcactccaaaacttctgagcaagctttgctttcgccaaacacctctgcactgtttcgacaactggagaatatttgtcaaatttacatgttttttattctatatcttttgaaata
gi|6 : acatgcggggtttctgctcatccacatgcggggtttcaattctgaagcgaagaaaagcgtcgAGAATGTTCGTCAAATTTCCAAGTTTTTTATTCTATATCTTTTGAAATATGGC-TT-TTTGGACATTTCTATTAAGTGAATCAAATTCTGCGTTCGTATAGAAGTCAGAATATGATATTCTATGTTGTTGAGAGGTCA-TACTTTAT-CG-A--AAAAATCCTATTTTGTGAGGGTTAATACATGTGACTACTGGGGTTTC
gi|7 : GGGTTTC--T----GCT-CA-T-CT-ACA-T--GCGGG--TTTCA-AT---TCTGAAGCG-AAG-A-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAG-TA--AAAGTTGAAATAATG-TATACAAAAaattc
gi|7 : atgcgAAAAGTAGG-TCAT-GGTAAGTAA--AAGTTGAAATAATG-TAT---A-CAAA-AACAATTT--ATTCACAAAA-----TAATTATGCTCACGGGTTGTAAGG--ATA-CATAAGCCATCTACATTT-----CAAAACTTCTGAGCAacaatttattcacaaaataattatgctcacgggttgtaaggatacataagccatctacatttcaaaacttctgagca
gi|8 : atgcggggtttctgctcatctacatgcgggtttcaattctgaagcgaagaaaagcgtcgGGGTTTC--TTCCTGCTTCAGT-CC-CAA-T--GCGGGT-TTCCA-AT---TCTGAAGCG-AGA-A-AAGGCGTCGAAGTGAAGGCTCAA-TGGTAA--TA--AA--TTGAAATAA----ATATAAA
gi|9 : tcaccgtgttacagggtcacactgcgGGGTTTC--T----GCT-CA-TCCC-ACA-TGAGCGGGGCTTTCAGAT---TCTGAAGCGAAAG-ACAAAGCGTCG-AAAGTAGGATC-ATTGGTAAG-TAATAAAGTTGAAAT-ACGCTATACCAAAtaaccataccaggaaaattatgagttgtttgagggta
gi|9 : agggtcacatgcgAAG-CG--AAAG---ACAAAGCG-T---CGAAAGTAGGATCATTGGTAAGTAATAAAGTTGAAAT-ACGCTAT---ACCAAACAACAACTTTAATTC-----A-----CAAcaacaactttaattcacaagattaatatgctt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATACAGGGTCACATGCGGGGTTTCTGCTC
Alignments
lowQualScore : 11111 3333333333333333333 222222222 1111
lowQualScore : 66 9999 4 4 4 4 4 55 99 4 777 3 3 4 8 4 4 3 55 4 4 0 5 5 77 1 1 00 1 5 00000 1 5 4444444444444444444 77 5 3 55 1 222222222 8 0 3 1 1 1 6 1 6 5555 2 1 1
lowQualScore : .. .... . . . . . .. .. . ... . . . . . . . .. . . . . . .. . . .. . . ..... . . ................... .. . . .. . ......... . . . . . . . . . .... . . .
lowQualScore : 11 4444 4 4 4 0 0 55 00 0 000 6 6 0 0 0 0 6 00 6 0 7 7 7 99 3 3 33 7 7 44444 4 7 4444444444444444444 99 7 0 88 0 111111111 0 6 8 4 4 0 7 0 7 0000 5 0 0
consensus : GGGTTTC--T----GCT-CA-T-CC-ACA-T--GCGGGG-TTTCA-AT---TCTGAAGCG-AAG-A-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAG-TA--AAAGTTGAAATAACG-TATACAAAAGTAGG-TCAT-GGTAAGTAA--AAGTTGAAATAACG-TAT---A-CAAA-AACAATTT--ATTC-----A-----TAATTATGCTCACGGGTTGTAAGG--ATA-TATAAGCCATCTACATTTCACTCCAAAACTTCTGAGCAAGCTTTGCTTTCGCCAAACACCTCTGCACTGTTTCGACAACTGGAGAATATTCGTCAAATTTACATGTTTTTTATTCTATATCTTTTGAAATATGGC-TT-TT-GGAAATTTCTNTTCGGTGAATCAAATTCTGCTTACGTATAGAAGTCAGAATATGACATTTTGTATTGTNGAGAGG-CATTGNTTTTT-TG-A--AAAAATCCTATTTTGTGTCGGTCAGTACNTGTGACTACCGGGGTTTC
Reference ( family-363 ) : GGGTTTC--T----GCT-CA-T-CC-ACA-T--GCGGGG-TTTCA-AT---TCTGAAGCG-AAG-A-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAG-TA--AAAGTTGAAATAACG-TATACAAAAGTAGG-TCAT-GGTAAGTAA--AAGTTGAAATAACG-TAT---A-CAAA-AACAATTT--ATTC-----A-----TAATTATGCTCACGGGTTGTAAGG--ATA-TATAAGCCATCTACATTTCACTCCAAAACTTCTGAGCAAGCTTTGCTTTCGCCAAACACCTCTGCACTGTTTCGACAACTGGAGAATATTCGTCAAATTTACATGTTTTTTATTCTATATCTTTTGAAATATGGC-TT-TT-GGAAATTTCTNTTCGGTGAATCAAATTCTGCTTACGTATAGAAGTCAGAATATGACATTTTGTATTGTNGAGAGG-CATTGNTTTTT-TG-A--AAAAATCCTATTTTGTGTCGGTCAGTACNTGTGACTACCGGGGTTTC
gi|1 : GGGTTTTCTT----GCT-CA-T-CC-ACAAT--GCGGGG-TTTCA-AT---TCTGAAGCG-AAGGA-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAGTTA--AAAGTTGAAA-AACG-TATACAAAA----------------------------AAATA----TATTTCA-CCAA-AATAATT-----------------------ATGTTCACGGGTTGTAAGGAAATATTATAAGCCATCTACATTTCACGCCAAAACTTCTGAGCAAGCTTTGCTTTCATCAAACACCTCTGCACTGTT--------TGGAGAATATTCGTCAAATTTACATATTTTTTATTCTATATCTTTTAAGAT-TAGCTTT-TT-TGAAATTTCTTTTTGGTGAATCAGATTCTGCTTACGTATAAAAGTCAGAATATGACATTTTGTATTGTGGAGAGG-CTTTGGTTTTT-TGAA--AAAAATCCTATTTTGTGTCGGTCAGTACCTGTGACTACCGGGGTTTC
gi|10 : cacatgcGGGTTTC--T----GCT-CA-T-CCCACA-T--GCGG---TTTCA-AT---TCTGAAGCG-AAG-A-AAAGCGTCGAAAA--AGG-TC-A-TGGTAAG-TA--AAAGTTGAAA-AACG-TA-GCAAAAattt
gi|11 : agggtcacatgcATAGAAGTCAGAATATAACATTTTGTGTTGTTGAGAGG-CGTTGCTTTTTATG----AAAAATCCTATTTTGTGTCGGTAAATACACGTGACTACCGGGGATTcaatttattcac
gi|12 : aGGGTTTC--T----GTT-CA-T-CC-ACA-T--GCGGG--TTACA-AT---TCTGAAGCG-AAG-A-AACGCATCGAAAAGTAGG-TC-C-TGGTAAG-TA--AAAGTTGAAATAACG-TATAactttc
gi|13 : atgcgTGAAGCG-AAG-A-AAGGCGCAGAAAAGTAGG-TC-A-TGGTAAG-TA--AACGTGGAAAAAA
gi|13 : tAAAAGTAGG-TCAT-GGTAAGTAA--ACGTGGAAA-AAAA-AGT---T-CAAA-AACAATAA--ATTT-----A-----CAAaagttcaaaaacaataaatttacaagaaat
gi|14 : ttgaagcgaagaaaggcgcagGGGTTTC--T----GCT-CA-T-GC-ACA-T--GCGGGG-TTTCA-AT---TCTGAAGCG-AAG-gaaat
gi|15 : ggtcacatgcgATTTTGTGTCGGTAAATACATGTGACTACCGCGATTTC
gi|16 : cTGCTCACGGGTTGTAAGG--ATA-TATTAGCCATATACATTatttct
gi|2 : GGGTTTC--T----GCT-CA-T-CC-ACA-T--GCGGGG-TTTCA-AT---TCTGAAGCA-AAG-A-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAG-TA--GAAGTTGAAATAACG-TATATNAAAGTAGG-TCAT-GGTAAGTAG--AAGTTGAAATGACG-TAT---A-CAAA-AACAATAT--ATTC-----A-----TAATTATGCTCACGGGTTGTAAAG--ATA-TATAAGCCATCTACATTTCACGCCAAAACTTCTGAGCAAGCTTTGCTATCACCAAACACCTCTACACTGTTTCGACAATTGGAGAATATTCGTCAAATTTACATGTTTTTTATTCTATATCTTTT--------------TT-GGAAATTTCTTTTCGGTGAATCAAATTATGCTTACGTATAGAAGTCAGAA-------------ATTGTGAAGAGG-CATTGTTTTTT-TG-A--AACAATCCTATTCTGTGCCGGTCAGTACCTGTGACTACCGGGGTTTC
gi|3 : C-ACA-T--GCGGGG-TTTCA-ATAAAT-TGATGCG-AAG-A-CAAGCGGAGAAAAGTAGG-TC-A-TAGTAAG-TA--AAAGTTGAAATAACG-TATACAA------------------------------AAACAATA-TAT---A-C-----ACAAT-------------A-----TAATAATGCTCACGGGTTGTAAGG--ATA-TATAAACCATCTACGTTTCACTCCAAAACTTCTGAGCAAGATTTGCTTTCACCAAACACCTCTGCGTTGTTTCGATAACTGAAGAATGTTCGTCAAATTTCCAAGTTTTTTATCCTATATCTTTCGAAATTTG----T-TT-G------------CGATGGATCAAATTCTACTTTCCCATAAAAGTCAGAATATAACTTTTTGTATTGTTCAGAGG-CATTGGTTTTT-TG-AAGAAAAATCATATTTTG
gi|4 : cagggtATTATGCTCACGGGTTGTAAGG--ATA-TATAAGCCATCTACATTTCACTCCAAAACTTCTGAG-AAGCTTTGCTTTCGCCAAACACCTCTGCACTGTTT-GACAACTGGAGAATATTCGTCAAATTTACATGTTTTTTATTCTATATCTTTTGAAATATAGC-TTATT-GGAAATTTCTGTTTGATGAATCAAATTCTGCTTACGTATAGAAGTCAGAATATGACATTTTGTATTGTGGAGAGG-CATTGGTTTTT-T--A--AAAAATC---TTTTGTGTCGGTCAGTACCTGTGACTACCGGGGTTTC
gi|5 : GGGTTTC--T----GCT-CA-T-CC-ACA-T--GCGGGG-TTTCA-AT---TCTGAAGCG-AAG-A-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAG-TA--AAAGTTGAAATAACG-TATACAAAAaa
gi|5 : acatgcgAAAAGTAGG-TCAT-GGTAAGTAA--AAGTTGAAATAACG-TAT---A-CAAA-AACAATTT--ATTC-----ACAAAATAATTATGCTCACGGGTTGTAAGG--ATA-TATAAGCCATCTACATTTCACTCCAAAACTTCTGAGCAAGCTTTGCTTTCGCCAAACACCTCTGCACTGTTTCGACAACTGGAGAATATTTGTCAAATTTACATGTTTTTTATTCTATATCTTTTGAAATAacaatttattcacaaaataattatgctcacgggttgtaaggatatataagccatctacatttcactccaaaacttctgagcaagctttgctttcgccaaacacctctgcactgtttcgacaactggagaatatttgtcaaatttacatgttttttattctatatcttttgaaata
gi|6 : acatgcggggtttctgctcatccacatgcggggtttcaattctgaagcgaagaaaagcgtcgAGAATGTTCGTCAAATTTCCAAGTTTTTTATTCTATATCTTTTGAAATATGGC-TT-TTTGGACATTTCTATTAAGTGAATCAAATTCTGCGTTCGTATAGAAGTCAGAATATGATATTCTATGTTGTTGAGAGGTCA-TACTTTAT-CG-A--AAAAATCCTATTTTGTGAGGGTTAATACATGTGACTACTGGGGTTTC
gi|7 : GGGTTTC--T----GCT-CA-T-CT-ACA-T--GCGGG--TTTCA-AT---TCTGAAGCG-AAG-A-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAG-TA--AAAGTTGAAATAATG-TATACAAAAaattc
gi|7 : atgcgAAAAGTAGG-TCAT-GGTAAGTAA--AAGTTGAAATAATG-TAT---A-CAAA-AACAATTT--ATTCACAAAA-----TAATTATGCTCACGGGTTGTAAGG--ATA-CATAAGCCATCTACATTT-----CAAAACTTCTGAGCAacaatttattcacaaaataattatgctcacgggttgtaaggatacataagccatctacatttcaaaacttctgagca
gi|8 : atgcggggtttctgctcatctacatgcgggtttcaattctgaagcgaagaaaagcgtcgGGGTTTC--TTCCTGCTTCAGT-CC-CAA-T--GCGGGT-TTCCA-AT---TCTGAAGCG-AGA-A-AAGGCGTCGAAGTGAAGGCTCAA-TGGTAA--TA--AA--TTGAAATAA----ATATAAA
gi|9 : tcaccgtgttacagggtcacactgcgGGGTTTC--T----GCT-CA-TCCC-ACA-TGAGCGGGGCTTTCAGAT---TCTGAAGCGAAAG-ACAAAGCGTCG-AAAGTAGGATC-ATTGGTAAG-TAATAAAGTTGAAAT-ACGCTATACCAAAtaaccataccaggaaaattatgagttgtttgagggta
gi|9 : agggtcacatgcgAAG-CG--AAAG---ACAAAGCG-T---CGAAAGTAGGATCATTGGTAAGTAATAAAGTTGAAAT-ACGCTAT---ACCAAACAACAACTTTAATTC-----A-----CAAcaacaactttaattcacaagattaatatgctt
blockSeqs : . TCCT T G C C . GA GC G AAA A . C C A T . AT T C A T TA C G A C AC A C TTATTCACAAAA . . G TC G ATAGCTTA T T C A T T C A AAG C A A
blockSeqs : . . . . . . . . G . . . . . A . . . . A . . . . A T C . T A . TTATTCACAAAA . . T TC G ATGGCTT . G C T G . T . A C A A
blockSeqs : . . . . . . . . G . . . . . . . . . . T . . . . A T T . A A . TTTAATTCA . . T TC G TTGT . A T A T . G . A A C C
blockSeqs : . . . . . . . . G . . . . . . . . . . T . . . . A T C . A A . AAATTTA . . T T G . . . A T G . G . A C C C
blockSeqs : . . . . . . . . G . . . . . . . . . . T . . . . A T T . A A . ATATTCA . . . . T . C . . . T A
blockSeqs : . . . . . . . . T . . . . . . . . . . T . . . . . . C . A . . A . .
blockSeqs : . . . . . . . . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . . . . . A .
blockSeqs : . . . . .
blockSeqCons : ** A**** NTATTCA************ ** TC TGT****** A***
originalCons : GGGTTTC--T----GCT-CA-T-CC-ACA-T--GCGGGG-TTTCA-AT---TCTGAAGCG-AAG-A-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAG-TA--AAAGTTGAAATAACG-TATACAAAAGTAGG-TCAT-GGTAAGTAA--AAGTTGAAATAACG-TAT---A-CAAA-AACAATTT--ATTC-----A-----TAATTATGCTCACGGGTTGTAAGG--ATA-TATAAGCCATCTACATTTCACTCCAAAACTTCTGAGCAAGCTTTGCTTTCGCCAAACACCTCTGCACTGTTTCGACAACTGGAGAATATTCGTCAAATTTACATGTTTTTTATTCTATATCTTTTGAAATATGGC-TT-TT-GGAAATTTCTNTTCGGTGAATCAAATTCTGCTTACGTATAGAAGTCAGAATATGACATTTTGTATTGTNGAGAGG-CATTGNTTTTT-TG-A--AAAAATCCTATTTTGTGTCGGTCAGTACNTGTGACTACCGGGGTTTC
finalCons : GGGTTTC--T----GCT-CA-T-CC-ACA-T--GCGGGG-TTTCA-AT---TCTGAAGCG-AAG-A-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAG-TA--AAAGTTGAAATAACG-TATACAAAAGTAGG-TCAT-GGTAAGTAA--AAGTTGAAATAACG-TATA----CAAA-AACAATNTATTCA------------TAATTATGCTCACGGGTTGTAAGG--ATA-TATAAGCCATCTACATTTCACTCCAAAACTTCTGAGCAAGCTTTGCTTTCGCCAAACACCTCTGCACTGTTTCGACAACTGGAGAATATTCGTCAAATTTACATGTTTTTTATTCTATATCTTTTGAAATTGT------TT-GGAAATTTCTNTTCGGTGAATCAAATTCTGCTTACGTATAGAAGTCAGAATATGACATTTTGTATTGTNGAGAGG-CATTGNTTTTT-TGA---AAAAATCCTATTTTGTGTCGGTCAGTACNTGTGACTACCGGGGTTTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATACAGGGTCACATGCGGGGTTTCTGCTC
Alignments
lowQualScore : 11111 3333333333333333333 5555555555555 1111
lowQualScore : 66 9999 4 4 4 4 4 55 99 4 777 3 3 4 8 4 4 3 55 4 4 0 5 5 77 1 1 00 1 5 00000 1 5 0000000000000000000 77 5 3 55 1 8888888888888 0 3 1 1 1 6 1 6 5555 2 1 1
lowQualScore : .. .... . . . . . .. .. . ... . . . . . . . .. . . . . . .. . . .. . . ..... . . ................... .. . . .. . ............. . . . . . . . . .... . . .
lowQualScore : 11 4444 4 4 4 0 0 55 00 0 000 6 6 0 0 0 0 6 00 6 0 7 7 7 99 3 3 33 7 7 44444 4 7 9999999999999999999 99 7 0 88 7 0000000000000 6 8 4 4 0 7 0 7 0000 5 0 0
consensus : GGGTTTC--T----GCT-CA-T-CC-ACA-T--GCGGGG-TTTCA-AT---TCTGAAGCG-AAG-A-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAG-TA--AAAGTTGAAATAACG-TATACAAAAGTAGG-TCAT-GGTAAGTAA--AAGTTGAAATAACG-TAT---A-CAAA-AACAATTT--ATTC-----A-----TAATTATGCTCACGGGTTGTAAGG--ATA-TATAAGCCATCTACATTTCACTCCAAAACTTCTGAGCAAGCTTTGCTTTCGCCAAACACCTCTGCACTGTTTCGACAACTGGAGAATATTCGTCAAATTTACATGTTTTTTATTCTATATCTTTTGAAA-T-----TGGCTTTTTGGAAATTTCTNTTCGGTGAATCAAATTCTGCTTACGTATAGAAGTCAGAATATGACATTTTGTATTGTNGAGAGG-CATTGNTTTTT-TG-A--AAAAATCCTATTTTGTGTCGGTCAGTACNTGTGACTACCGGGGTTTC
Reference ( family-363 ) : GGGTTTC--T----GCT-CA-T-CC-ACA-T--GCGGGG-TTTCA-AT---TCTGAAGCG-AAG-A-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAG-TA--AAAGTTGAAATAACG-TATACAAAAGTAGG-TCAT-GGTAAGTAA--AAGTTGAAATAACG-TAT---A-CAAA-AACAATNT--ATTC-----A-----TAATTATGCTCACGGGTTGTAAGG--ATA-TATAAGCCATCTACATTTCACTCCAAAACTTCTGAGCAAGCTTTGCTTTCGCCAAACACCTCTGCACTGTTTCGACAACTGGAGAATATTCGTCAAATTTACATGTTTTTTATTCTATATCTTTTGAAA-T-----TG----TTTGGAAATTTCTNTTCGGTGAATCAAATTCTGCTTACGTATAGAAGTCAGAATATGACATTTTGTATTGTNGAGAGG-CATTGNTTTTT-TG-A--AAAAATCCTATTTTGTGTCGGTCAGTACNTGTGACTACCGGGGTTTC
gi|1 : GGGTTTTCTT----GCT-CA-T-CC-ACAAT--GCGGGG-TTTCA-AT---TCTGAAGCG-AAGGA-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAGTTA--AAAGTTGAAA-AACG-TATACAAAA----------------------------AAATA----TATTTCA-CCAA-AATAAT-T--AT--------------------GTTCACGGGTTGTAAGGAAATATTATAAGCCATCTACATTTCACGCCAAAACTTCTGAGCAAGCTTTGCTTTCATCAAACACCTCTGCACTGTT--------TGGAGAATATTCGTCAAATTTACATATTTTTTATTCTATATCTTTTAAGA-T-----TAGCTTTTTTGAAATTTCTTTTTGGTGAATCAGATTCTGCTTACGTATAAAAGTCAGAATATGACATTTTGTATTGTGGAGAGG-CTTTGGTTTTT-TGAA--AAAAATCCTATTTTGTGTCGGTCAGTACCTGTGACTACCGGGGTTTC
gi|10 : cacatgcGGGTTTC--T----GCT-CA-T-CCCACA-T--GCGG---TTTCA-AT---TCTGAAGCG-AAG-A-AAAGCGTCGAAAA--AGG-TC-A-TGGTAAG-TA--AAAGTTGAAA-AACG-TA-GCAAAAattt
gi|11 : agggtcacatgcATAGAAGTCAGAATATAACATTTTGTGTTGTTGAGAGG-CGTTGCTTTTTATG----AAAAATCCTATTTTGTGTCGGTAAATACACGTGACTACCGGGGATTcaatttattcac
gi|12 : aGGGTTTC--T----GTT-CA-T-CC-ACA-T--GCGGG--TTACA-AT---TCTGAAGCG-AAG-A-AACGCATCGAAAAGTAGG-TC-C-TGGTAAG-TA--AAAGTTGAAATAACG-TATAactttc
gi|13 : atgcgTGAAGCG-AAG-A-AAGGCGCAGAAAAGTAGG-TC-A-TGGTAAG-TA--AACGTGGAAAAAA
gi|13 : tAAAAGTAGG-TCAT-GGTAAGTAA--ACGTGGAAA-AAAA-AGT---T-CAAA-AACAATAA--ATTT-----A-----CAAaagttcaaaaacaataaatttacaagaaat
gi|14 : ttgaagcgaagaaaggcgcagGGGTTTC--T----GCT-CA-T-GC-ACA-T--GCGGGG-TTTCA-AT---TCTGAAGCG-AAG-gaaat
gi|15 : ggtcacatgcgATTTTGTGTCGGTAAATACATGTGACTACCGCGATTTC
gi|16 : cTGCTCACGGGTTGTAAGG--ATA-TATTAGCCATATACATTatttct
gi|2 : GGGTTTC--T----GCT-CA-T-CC-ACA-T--GCGGGG-TTTCA-AT---TCTGAAGCA-AAG-A-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAG-TA--GAAGTTGAAATAACG-TATATNAAAGTAGG-TCAT-GGTAAGTAG--AAGTTGAAATGACG-TAT---A-CAAA-AACAATAT--ATTC-----A-----TAATTATGCTCACGGGTTGTAAAG--ATA-TATAAGCCATCTACATTTCACGCCAAAACTTCTGAGCAAGCTTTGCTATCACCAAACACCTCTACACTGTTTCGACAATTGGAGAATATTCGTCAAATTTACATGTTTTTTATTCTATATCTTT------------------TTTGGAAATTTCTTTTCGGTGAATCAAATTATGCTTACGTATAGAAGTCAGAA-------------ATTGTGAAGAGG-CATTGTTTTTT-TG-A--AACAATCCTATTCTGTGCCGGTCAGTACCTGTGACTACCGGGGTTTC
gi|3 : C-ACA-T--GCGGGG-TTTCA-ATAAAT-TGATGCG-AAG-A-CAAGCGGAGAAAAGTAGG-TC-A-TAGTAAG-TA--AAAGTTGAAATAACG-TATACAA------------------------------AAACAATA-TAT---A-C-----ACAAT-------------A-----TAATAATGCTCACGGGTTGTAAGG--ATA-TATAAACCATCTACGTTTCACTCCAAAACTTCTGAGCAAGATTTGCTTTCACCAAACACCTCTGCGTTGTTTCGATAACTGAAGAATGTTCGTCAAATTTCCAAGTTTTTTATCCTATATCTTTCGAAATT-----TG----TTTG------------CGATGGATCAAATTCTACTTTCCCATAAAAGTCAGAATATAACTTTTTGTATTGTTCAGAGG-CATTGGTTTTT-TG-AAGAAAAATCATATTTTG
gi|4 : cagggtATTATGCTCACGGGTTGTAAGG--ATA-TATAAGCCATCTACATTTCACTCCAAAACTTCTGAG-AAGCTTTGCTTTCGCCAAACACCTCTGCACTGTTT-GACAACTGGAGAATATTCGTCAAATTTACATGTTTTTTATTCTATATCTTTTGAAA-TATAGCTT----ATTGGAAATTTCTGTTTGATGAATCAAATTCTGCTTACGTATAGAAGTCAGAATATGACATTTTGTATTGTGGAGAGG-CATTGGTTTTT-T--A--AAAAATC---TTTTGTGTCGGTCAGTACCTGTGACTACCGGGGTTTC
gi|5 : GGGTTTC--T----GCT-CA-T-CC-ACA-T--GCGGGG-TTTCA-AT---TCTGAAGCG-AAG-A-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAG-TA--AAAGTTGAAATAACG-TATACAAAAaa
gi|5 : acatgcgAAAAGTAGG-TCAT-GGTAAGTAA--AAGTTGAAATAACG-TAT---A-CAAA-AACAATTT--ATTC-----ACAAAATAATTATGCTCACGGGTTGTAAGG--ATA-TATAAGCCATCTACATTTCACTCCAAAACTTCTGAGCAAGCTTTGCTTTCGCCAAACACCTCTGCACTGTTTCGACAACTGGAGAATATTTGTCAAATTTACATGTTTTTTATTCTATATCTTTTGAAA-T-----acaatttattcacaaaataattatgctcacgggttgtaaggatatataagccatctacatttcactccaaaacttctgagcaagctttgctttcgccaaacacctctgcactgtttcgacaactggagaatatttgtcaaatttacatgttttttattctatatcttttgaaata
gi|6 : acatgcggggtttctgctcatccacatgcggggtttcaattctgaagcgaagaaaagcgtcgAGAATGTTCGTCAAATTTCCAAGTTTTTTATTCTATATCTTTTGAAA-TA----TGGCTTTTTGGACATTTCTATTAAGTGAATCAAATTCTGCGTTCGTATAGAAGTCAGAATATGATATTCTATGTTGTTGAGAGGTCA-TACTTTAT-CG-A--AAAAATCCTATTTTGTGAGGGTTAATACATGTGACTACTGGGGTTTCa
gi|7 : GGGTTTC--T----GCT-CA-T-CT-ACA-T--GCGGG--TTTCA-AT---TCTGAAGCG-AAG-A-AAAGCGTCGAAAAGTAGG-TC-A-TGGTAAG-TA--AAAGTTGAAATAATG-TATACAAAAaattc
gi|7 : atgcgAAAAGTAGG-TCAT-GGTAAGTAA--AAGTTGAAATAATG-TAT---A-CAAA-AACAATTT--ATTCACAAAA-----TAATTATGCTCACGGGTTGTAAGG--ATA-CATAAGCCATCTACATTT-----CAAAACTTCTGAGCAacaatttattcacaaaataattatgctcacgggttgtaaggatacataagccatctacatttcaaaacttctgagca
gi|8 : atgcggggtttctgctcatctacatgcgggtttcaattctgaagcgaagaaaagcgtcgGGGTTTC--TTCCTGCTTCAGT-CC-CAA-T--GCGGGT-TTCCA-AT---TCTGAAGCG-AGA-A-AAGGCGTCGAAGTGAAGGCTCAA-TGGTAA--TA--AA--TTGAAATAA----ATATAAA
gi|9 : tcaccgtgttacagggtcacactgcgGGGTTTC--T----GCT-CA-TCCC-ACA-TGAGCGGGGCTTTCAGAT---TCTGAAGCGAAAG-ACAAAGCGTCG-AAAGTAGGATC-ATTGGTAAG-TAATAAAGTTGAAAT-ACGCTATACCAAAtaaccataccaggaaaattatgagttgtttgagggta
gi|9 : agggtcacatgcgAAG-CG--AAAG---ACAAAGCG-T---CGAAAGTAGGATCATTGGTAAGTAATAAAGTTGAAAT-ACGCTAT---ACCAAACAACAACTTTAATTC-----A-----CAAcaacaactttaattcacaagattaatatgctt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATACAGGGTCACATGCGGGGTTTCTGCTC