lowQualScore : 88888888888888888 1 2 2222 44444444444444444444 111 1 66666666666 11 111111 2222 2222222 222222222 1 22222 1 222 11 1 1 111 222222 3 1 11 111 22222 1111 1 11 2222222222222222 1 1111 2 111 11111 2222222 11 11 1 1 222222222 2 111 555 1 222 11 1 3 111 111 555555555555 777777777777777777777777777777777777777777 1 2 3 333
lowQualScore : 77777777777777777 2 3 9 0 6 6 6 2222 99 66666666666666666666 7 6 111 3 7 5 0 6 77777777777 00 1 888888 0000 6666666 888888888 0 55555 4 3 0 111 33 0 2 6 8 444 666666 6 8 2 8 5 33 777 11111 3 7777 0 6 2 22 5 5 5 77 0 0000000000000000 5 1 2222 0 5 666 5 3 33333 5555555 3 3 66 33 6 0 0 777777777 6 4 333 555 3 3 33 888 33 0 0 3 2 111 777 8 0 000000000000 6 666666666666666666666666666666666666666666 2 2 5 0 5 444
lowQualScore : ................. . . . . . . . .... .. .................... . . ... . . . . . ........... .. . ...... .... ....... ......... . ..... . . . ... .. . . . . ... ...... . . . . . .. ... ..... . .... . . . .. . . . .. . ................ . . .... . . ... . . ..... ....... . . .. .. . . . ......... . . ... ... . . .. ... .. . . . . ... ... . . ............ . .......................................... . . . . . ...
lowQualScore : 55555555555555555 5 0 2 0 7 7 7 2222 22 77777777777777777777 8 7 777 5 3 7 3 7 00000000000 33 0 555555 2222 0000000 555555555 0 00000 2 2 0 000 88 0 5 2 0 000 666666 0 0 0 0 0 22 555 88888 2 0000 8 7 0 33 7 4 7 99 7 7777777777777777 7 4 1111 0 0 666 7 0 77777 3333333 3 2 44 88 0 0 0 666666666 7 7 000 000 3 2 55 888 88 0 0 2 5 000 000 0 8 888888888888 7 777777777777777777777777777777777777777777 7 9 0 1 0 777
consensus : TAATGTCACATTAAATATTGATACAACTGAAGNCCNGATACCAAAT-ATT-AAAT-GAAGA-AGAAA-TTCAC--TTGGCAT--NTG-------GT-TATATTT-TT---AAATTAATTTTCAAANTC-GCTTTT---CGA--TCATN-AGCGTTTTC--A-GGAGTG--CCTCCAT-------ACTT-CGTG-AT-AAAAGTTG-ATTTT-----GATCAATTTC-AAACT-ATAAA--GG-ANCAATGAA-GA---TAANT-TTTAGTTCGGGT-CGAGAT-TTCTGA-TATG---AAA-A--TTGGCACTGG----ATACTAATCAT-TTAAATGAGG-A-AGAACTTC-ACC--TGCAT---A-T-GGC--AA--TATT-TTT-AAA----TAATTTCCATATTCGC-TTCATTTA-GCGTTTTCAGGAGGG--T--TACAT-A-ATTTACAATG-AACAGAGCTCCGCTTCGATTTTTCAAGAGC-AAA-AGGAAC--CG-TAT-CGGTCGCCGTTT-TAAAC-CAAACCAGACACATTCCAATCC-C-GGATA--GAGTAAACTACA-AAACCAAATGANGAAG-A-AC--TTTTTCCGAA-TTACTCATACT--------TAT-AGATAA-CAA--TTTTTGTCTTTTTTCC--T----TATA-----T-A-TCTATTGCTCTGAAAACCGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACACC-ATTTCTCCAT
Reference ( gi|2 ) : TAATGTCACATTAA---TTGAT-TAAC-G--GGCCAGATACTAAAT-ATT-AAAT-GAAGA-AGAAATTTCAC--TTGGCAT--ATG-------GT-TATATTT-TT---AAATTAATTTTCAAAATC-GCTTTC---CGA-GTCATT-AGCATTTTC--A-AGAGTG--C-TCCAT-------ACTT-CGTG-AT-AAAAGTTG-ATTTT-----GACCAATTTC-AAACT-A-AAA--GA-ACCATTGAA-GA---TAATT-TTTAGTTCGGAT-CGA-AT-TTCGGA-TATG---AAA-A--TTGGCACTGG----ATACTAATCAT-TTAAATGAGA-A-AGAATTTC-ACC--TGCAT---A-T-AGC--AA--TATT-TTT-AAA----TAATTTTC-TATTCGC-TTCATTTA-GCGTTTTCAGAAGGG--T--TACAT-A-ATTTACAATT-AACAGAGCTCCGCTTCGAATTTTCAAAAGC-AAA-AGGAAC--C--TATCCGGTC-CCATTTGTAA---CAATCCAGACACATTCCAATCC-T-GGATA--GAGTAAACTACA-AAACC-AATGAGGAAG-A-AC--TTTTTCCGAA-TTACTCA-ACT--------TAT-AGATAATCAATTTTTTTATATTTTTTCC--T----TATA-----T-A-TCTATTGCTCTGAAAACCGCCATTTTGAGA-CAATATGGCC-GCTATGCAAATTAGC-AAGTGTACACC-A-TTCTCCAT
gi|1 : TAATGTCACATTAAATATTGATACAAC-AAAGTCCAGATACTAAAT-ATT-AAAT-GAAGA-AGAAAATTCACCATTTGCATACATGGGAGAGAGT-TATATTTCTT---AAATTCATAATC-AAATCAGCTTTTCCACGA-GTCATG-TGCATTTTCATA-GGAGTGGTC-TCCAT-------ACTT-CGTGAATAAAAAGTTG-AAATTCATAAGAACCATTTCAAAACTAA-AAA--GAGACCA-TGAA-GAAATTAATTAATTAATTTGGGT-CGAGATGTTCTGA--ATG---AAA-A---TGGCACTGGTATAATACTAATCAT-TTAAATGAGAGA-AGAATTTCAACC--TGAGTAAAA-T-GGCAAAA--TATT-TTTAAAA----TAATTTTCATATTCGCATTCATTTA-GCGTCTTCAGAAGGGTAT--TACATGA-ATTAACAATTAAACAGAGCTCCGCTTCGAA-TTTCAAGAGC-AAA-AGGAACCGC--TAT-CGGTC-CCATTTGTAAAT-CAACCCAG-CACATTTCAATCCAA-GGATACGAAGTAAACTAAACAAACCAAATGAGGAAG-ATAC--TTTTTCCGAAGTTAC-CATAC---------TATCAGATAATCAA--TTTTTGTCTTTTTTCCATT----TA-A-----T-A-ATTA-TGCTCTTAAAAGCGCCATATTGAAC-CAATATGGCC-GCTATGCAAATTAGCAAAGTGTACACC-ATTTCTCCAT
gi|3 : AACTG--GGTCCGATAC-AAAT-ATT-AAAT-------------TTCAC--TTG-CAT---TG-------GC-TAAATAA-TT---GAATTAAATTTCAAAGTT-GCTTCT---CGATGTCATTTAG-ATTTTC--AGAGAGTG--CCTCTATTAGGCCTACTT-CATG-AA-AAAAGTTGTATTTT-----GACCACTTTC-AAACT-A-AAAAGGA-ACCATTGAC-GG---TAATT-T--AGTTCGGGTTCGAGAT-GTCTGA-TATG---AAATA--CTGGCACTGG----ATACTAATCATGTTAAA-GAGG-A-AGA-CCTC-ACCGTTGCAT---A-TTGGC--AAAATATTATTT-AAA----TATTTTCT-TATTCGC-TTCATA-A-GCGTTTTCAGGAGGG------AC-T-AGATTGACAATG-AACAGAGCTCCGCTTCGATTTTTCAAGAGCGAAA-AGGAAC--CG-CAT-CGGTCGCCGT---TAAACGCAAACCAAACACAT--CAATCC-CGGGATA--GAGTAAACTACA-AATCCAAATGAGAAAGCA-AC---TTTTCCGAA-TTACTCATACT--------TAT-AGATAA-----------ACATTTTTTCC--TTTACTATA-------A-TCTATTGTCCTGAAAACCTCC--TATGAGC-CAATATGGCCGGCTATGCAAATTAGCAAAATGTACAa
gi|5 : taatgcgacttaatgtagacccaaGATAC--AATCATTTAAAT-GAGGA-AG-AACTTCAC--CT-GCAT--ATG-------G--CA-ATTT-TTAAAAAAATAATTTTCATATTC-GCT-----------TCATA-AGCGTTTTC--A-GGAtg
gi|4 : gtactgACCAAATGATT-AAATTGAAAA-AAAA--TGCAC--TTG-CTT--TTA-------CT-TAAGTTT-TT---AA-TTAATTC---AAATC-GCTT-----------CATT-AGCGTTTT---A-GGGGTG--CCTCCAT-------ACTTTCGTT-GT-AAAAGTTG-ATTTT-----GATCAA-TTC-AAACT-ATAAA--GG-AGCAATGAAGGA---TAA-G-TTTAGTTTCGGT-AGA-TT-TTCTGATTATGAAAAAA-A--TTGG-ACTGG----ATACTAATCAT-TTAAA-GAG--G-AGAACTTC-ACT--T-CAG---ATT-GGC--AG---ATT-TTG-AAA----TAATTTCA-TATTCGC-TTCATTTATGCGTTTTCAGGAGGA--T--TACTT-A---TTAC-ATC-AAGGGAGCTCCGCTTCGATTTTTCAAGAGC-CAATAAGATC--C--Ttggttacaatgaacagagctccgcttcgatttttcaagagcaaaagcaaccgctatccggtcgccttttttaaacaaaccaaacacattccaatccctgatagagtaaactacaaaaccaaatgaagaacttttttcgaattactcatacttacaaatgtatagataaacaattgttgtcttttttccttgctctgaaaactgccatattgagaccaatatggccgctatgcaaattagcaaagtgtacatcatttctcc
gi|10 : catattaaaagttcatctcccttttagtgttgattttccccattttcaaagtgaaaatgaatcattgaagaattgttagtttgagccaagaatgtcttgacacaaaatagcTT-AAAT-GAGGA-AG-AACTTCAC--CT-GCAT--CTG-------GCAAATATTT-TT---AAA-TAATTTTCGTATTC-GCT-----------TCATA-AGCGTTTTC--A-GAAGAG--T-TACAT-------AATT-c
gi|6 : tcat-AAAT-GAAAACAGAAAATCC----TTG-CATT-CTA-------CT-TATATTT-TT---TAATTAATTT-CAAA--------TC---TGG-TTCATT-AGCGTTTT-----AGGGTG--C-TCCAT-------ACTT-------T-AAAAGTTG-ATTTT-----GATCAATTTC-AAACT-ATAAA--GG-AGCAATGAA-GA---TAAGT-TT-AGTTCGGGT-TGAGAT-TTCTGA-TATG---AAA-AAATTGGCACTGG----ATACTAATCAT-TTAAA-GAGG-A-AGAACTTC-ACC--TTCAG---A-T-GGCA-AA--TATT-TTG-AAA----TAATTTTCATATTCGC-TTCATTTacaatgaacagagctc
gi|15 : AA-GA---TAAGT-TT-AGTTCGGGT-CGAGAT-TTC
gi|5 : GTACTGG----ATAC-AATCAT-TTAAATGAGG-A-AGAACTTC-ACC--TGCAT---A-T-GGC--AA--T--T-TTT-AAAAAAATAATTTTCATATTCGC-TTCATA-A-GCGTTTTCAGGATGG--T--TACA-----------ATG-AACAGAGCTCCGCTTCGATTTTTCAAGAGC-AAA-AGCAAC--CGCTATCCGGTCGCCTTTTTTAAA--CAAACCAAACACATTCCAATCC-C-TGATA--GAGTAAACTACA-AAACC-AA--ATGAAG-A-AC--TTTTTTCGAA-TTACTCATACTTACAAATGTAT-AGATAAACAA--TTGTTGTCTTTTTTCC------------------------TTGCTCTGAAAACTGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACATC-ATTTCTCCttttatg
gi|10 : TCAT-TTAAATGAGG-A-AGAACTTC-ACC--TGCAT---C-T-GGC--AAA-TATT-TTT-AAA----TAATTTTCGTATTCGC-TTCA-TAA-GCGTTTTCAGAAGAG--T--TACAT-A-A-TTACAATG-AACAGAGCTC
gi|6 : AAATGAAA-ACAGAAAATC--CT--TGCATT--C-T-ACT--TA--TATT-TTTTAAT----TAATTTCA-AATCTGG-TTCA-TTA-GCGTTTT----AGGG--TGCTCCAT-A-CTTTAAAA
gi|16 : -TATTCGC-TTCATA-A-GCGTTTTCAGGAGGG--T--gttgattttgatcaatttcaaactataaaggagcaatgaagataagtttagttcgggttgagatttctgatatgaaaaaattggcactggatactaatcatttaaagaggaagaacttcaccttcagatggcaaatattttgaaataattttcatattcgcttcattt
gi|8 : AGACACATTCCAATTC-C-GGATA--GAGTAAACCACC-AAACCAAATGATGAAG-A-GCTTTTTTTCCGAA-TTACTCATACT--------AAT-ACATG-----------TATA--------------------------A-TCTATTGCTCTGAAAACAGCCACATTGAGACCAATATGGTC-GCTATGCACAGTAGCAAAATATACCCCTT-TTCTCCAT
gi|9 : TTTCCGAA-TTACTCATACT--------TGT-AGATAATCA--TTTTTTGTCTTTTTTCC--T----TATA-----TAA-TTTATTGCTCTGAAAACCGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACATC-ATTTCTCCATa
gi|11 : -AGATAAACAATTTTT--GTCTTTTTTCC--T----TATAAATTAT-AATCTATTGCTCTGAAAACCGCCATATCGAGACCAATATGGC-----AAGCA--------AAGTGTATATG-ATTTCTCCAT
gi|12 : -CAATATGGCC-GCTATGCAAATTAGCAAAATGTACATG-ATTTCTCCA
gi|13 : ATGGCC-GCTATGCAAATTAGCAAAGTGTACGCC-ATTTCTCCAT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): GAGAATTCGTGTTACGCTTTATTCATGAGTTCATTACAGTACATTTTATCTCATAAATTATTCATATTAAAGATGACCCCTTTGTTAGTCGTTTGATTTTTCCATATTCTCAAAGTAAAAATGTAATCATATGAAGAAATTTTGCTATTTTCCTCCAATATTGAACCCAATCCATTGATATTCAAATAGAAAGGATAAAAGTGTCTTGAAAA
Unaligned ( gi|14 ): TTAATGTCACATTAAATATTGATACAACCGGGTCCTGA
Alignments
lowQualScore : 1 4444444 1 1 11 2 4444444444444 11 555555555555 111111 111 2222222 11111 1 11111 111 1111 111 1 111 1111 111 11111 22 1 1 1 22222222 11 111 22222222 2 22222222
lowQualScore : 3 5 0 9 9999999 1 1 0 0 5 1 8 8 8 0 11 0 1111111111111 1 8 0 11 8 1 999999999999 99 333333 3 111 6666666 8 8 6 6 66666 6 2 6 1 6 5 0 77 77777 5 5 5 5 5 55 777 6 2222 1 5 9 5 0 5 66 333 5 0 444 5 5555 9 5 4 111 5 5 66 1 55555 1 3 77 1 0 8 22 0 0 5 4 88888888 3 0 0 8 8 11 8 0 8 8 8 111 6 44444444 5 8 999 1 77 1 88888888 1 4
lowQualScore : . . . . ....... . . . . . . . . . . .. . ............. . . . .. . . ............ .. ...... . ... ....... . . . . ..... . . . . . . . .. ..... . . . . . .. ... . .... . . . . . . .. ... . . ... . .... . . . ... . . .. . ..... . . .. . . . .. . . . . ........ . . . . . .. . . . . . ... . ........ . . ... . .. . ........ . .
lowQualScore : 2 5 8 2 2222222 0 0 5 0 0 4 0 0 0 8 00 0 2222222222222 4 0 8 66 8 4 444444444444 00 222222 8 222 0000000 0 0 7 7 77777 7 2 7 0 7 7 1 99 33333 7 7 7 7 7 99 999 7 1111 7 0 4 0 2 0 99 888 0 0 111 0 6666 4 1 4 888 0 0 99 7 66666 6 2 77 4 8 0 55 0 0 0 2 55555555 5 8 8 0 0 00 0 8 8 0 0 888 7 22222222 7 6 666 4 99 4 66666666 4 4
consensus : TAATGTCACATTAAATATTGATACAA--CCG-GGNCCNGATACTAAAT-ATTAAATGAAGA-AGAAA-TT-CAC--TTGGCATNC-TGG-------TTATATTT-TTAAATTAATTTTCAAANTCGCTTTTC---GAGT--CATT-AGCGTTTTCA--G-GAGTG-CCTCCAT-------AC-TTCGTGA-TAAAA-GTTG-ATTTTGAC-----CAATTTCAAA-CTAAAAA-GGANCAAT-GAA-GATA--AGTT--TTAGTTCGGGT-CGAG-A-T-TTC-TGA-TATG---AAA-ATTGGCACTGG----ATACTAATCAT-TTAAATGAG-GAAGAACTTCA-CC--TGCATA---T-GGC-AA--TATT-TTTAAA----TAATTTTCATATTCGC-TTCATTTA-GCGTTTTCAGGAG-GGT--TACAT-A-ATTTACAAT-GAACAGAGCTCCGCTTCGATTTTTCAAGAGC-AAAAGGAACCGCTAT-C-GGTCGCCGTTTGTAAAN-CAANCCAGACACATTCCAATCCC-GG-ATA--GAGTAAACTACA-AAACCAAATGAGGAAG-A-AC--TTTTTCCGAA-TTACTCATACTTA--------T-AGATAATCAA--TTTTTGTCTTTTTTCC--TTATA-----TA-TCTATTGCTCTGAAAACCGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACACCATTTCTCCAT
Reference ( family-3592 ) : TAATGTCACATTAAATATTGATACAA--CTGAAGNCCNGATACCAAAT-ATTAAATGAAGA-AGAAA-TT-CAC--TTGGCATN--TGG-------TTATATTT-TTAAATTAATTTTCAAANTCGCTTTTC---GA-T--CATN-AGCGTTTTCA--G-GAGTG-CCTCCAT-------AC-TTCGTGA-TAAAA-GTTG-ATTTTGAT-----CAATTTCAAA-CTATAAA-GGANCAAT-GAA-GATA--ANTT--TTAGTTCGGGT-CGAG-A-T-TTC-TGA-TATG---AAA-ATTGGCACTGG----ATACTAATCAT-TTAAATGAG-GAAGAACTTCA-CC--TGCATA---T-GGC-AA--TATT-TTTAAA----TAATTTCCATATTCGC-TTCATTTA-GCGTTTTCAGGAG-GGT--TACAT-A-ATTTACAAT-GAACAGAGCTCCGCTTCGATTTTTCAAGAGC-AAAAGGAACCG-TAT-C-GGTCGCCGTTT-TAAAC-CAAACCAGACACATTCCAATCCC-GG-ATA--GAGTAAACTACA-AAACCAAATGANGAAG-A-AC--TTTTTCCGAA-TTACTCATACTTA--------T-AGATAA-CAA--TTTTTGTCTTTTTTCC--TTATA-----TA-TCTATTGCTCTGAAAACCGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACACCATTTCTCCAT
gi|1 : TAATGTCACATTAAATATTGATACAA--C-AAAGTCCAGATACTAAAT-ATTAAATGAAGA-AGAAAATT-CACCATTTGCATACATGGGAGAGAGTTATATTTCTTAAATTCATAATCAAATCAGCTTTTCCACGAGT--CATG-TGCATTTTCATAG-GAGTGGTCTCCAT-------AC-TTCGTGAATAAAAAGTTG-AAATTCATAAGAACCATTTCAAAACTAAAAA-GAGACCAT-GAA-GAAATTAATTAATTAATTTGGGT-CGAG-A-TGTTC-TGA--ATG---AAA-AT-GGCACTGGTATAATACTAATCAT-TTAAATGAGAGAAGAATTTCAACC--TGAGTAAAAT-GGC-AAAATATT-TTTAAAA---TAATTTTCATATTCGCATTCATTTA-GCGTCTTCAGAAG-GGTATTACATGA-ATTAACAATTAAACAGAGCTCCGCTTCGAATTT-CAAGAGC-AAAAGGAACCGCTAT-C-GGTC-CCATTTGTAAAT-CAACCCAG-CACATTTCAATCCAAGG-ATACGAAGTAAACTAAACAAACCAAATGAGGAAG-ATAC--TTTTTCCGAAGTTAC-CATAC-TA--------TCAGATAATCAA--TTTTTGTCTTTTTTCCATTTA-A-----TA-ATTA-TGCTCTTAAAAGCGCCATATTGA-ACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACACCATTTCTCCAT
gi|10 : TCAT-TTAAATGAG-GAAGAACTTCA-CC--TGCATC---T-GGCAAA--TATT-TTTAAA----TAATTTTCGTATTCGC-TTCA-TAA-GCGTTTTCAGAAG-AGT--TACAT-A-A-TTACAAT-GAACAGAGCTCa
gi|11 : -AGATAAACAA--TTTTTGTCTTTTTTCC--TTATAAATTATAATCTATTGCTCTGAAAACCGCCATATCGAGACCAATATGGC-----A--------AGCAAAGTGTATATGATTTCTCCAT
gi|12 : CAATATGGCC-GCTATGCAAATTAGCAAAATGTACATGATTTCTCCA
gi|13 : ATGGCC-GCTATGCAAATTAGCAAAGTGTACGCCATTTCTCCAT
gi|14 : TAATGTCACATTAAATATTGATACAA--CCG-GGTCCTGA
gi|15 : tAA-GATA--AGTT--T-AGTTCGGGT-CGAG-A-T-TTC-TTT-TATG---
gi|16 : TATTCGC-TTCATA-A-GCGTTTTCAGGAG-GGT--
gi|2 : TAATGTCACATTAA---TTGAT-TAA--C---GGGCCAGATACTAAAT-ATTAAATGAAGA-AGAAA-TTTCAC--TTGGCATA--TGG-------TTATATTT-TTAAATTAATTTTCAAAATCGCTTTCC---GAGT--CATT-AGCATTTTCA--A-GAGTG-C-TCCAT-------AC-TTCGTGA-TAAAA-GTTG-ATTTTGAC-----CAATTTCAAA-CTA-AAA-GAACCATT-GAA-GATA--ATTT--TTAGTTCGGAT-CGA--A-T-TTC-GGA-TATG---AAA-ATTGGCACTGG----ATACTAATCAT-TTAAATGAG-AAAGAATTTCA-CC--TGCATA---T-AGC-AA--TATT-TTTAAA----TAATTTTC-TATTCGC-TTCATTTA-GCGTTTTCAGAAG-GGT--TACAT-A-ATTTACAAT-TAACAGAGCTCCGCTTCGAATTTTCAAAAGC-AAAAGGAACC--TATCC-GGTC-CCATTTGTAA---CAATCCAGACACATTCCAATCCT-GG-ATA--GAGTAAACTACA-AAACC-AATGAGGAAG-A-AC--TTTTTCCGAA-TTACTCA-ACTTA--------T-AGATAATCAATTTTTTTATATTTTTTCC--TTATA-----TA-TCTATTGCTCTGAAAACCGCCATTTTGAGA-CAATATGGCC-GCTATGCAAATTAGC-AAGTGTACACCA-TTCTCCAT
gi|3 : TAATGCGAC-TTAA-TGTAGACCCAAAACTG--GGTCCGATAC-AAAT-ATTAAAT------------TT-CAC--TTG-CAT---TGG-------CTAAATAA-TTGAATTAAATTTCAAAGTTGCTTCTC---GA-TGTCATTTAG-ATTTTCA--GAGAGTG-CCTCTATTAGGCCTAC-TTCATGA-AAAAA-GTTGTATTTTGAC-----CACTTTCAAA-CTAAAAA-GGAACCATTGAC-GGTA--A--T--TTAGTTCGGGTTCGAG-A-T-GTC-TGA-TATG---AAATACTGGCACTGG----ATACTAATCATGTTAAA-GAG-GAAGA-CCTCA-CCGTTGCATA---TTGGC-AAAATATTATTTAAA----TATTTTCT-TATTCGC-TTCATA-A-GCGTTTTCAGGAG-GG----AC-T-AGATTGACAAT-GAACAGAGCTCCGCTTCGATTTTTCAAGAGCGAAAAGGAACCG-CAT-C-GGTCGCCGTT---AAACGCAAACCAAACACAT--CAATCCC-GGGATA--GAGTAAACTACA-AATCCAAATGAGAAAGCA-AC---TTTTCCGAA-TTACTCATACTTA--------T-AGATAA-ACA--TTTTT-TCCTTT---A--CTATA------A-TCTATTGTCCTGAAAACCTCC-TA-TGAG-CCAATATGGCCGGCTATGCAAATTAGCAAAATGTACA
gi|4 : -GTTG-ATTTTCCC-----CATTTTCAAA-GTGAAAATGAATCATT-GAA-G--A--ATTG--TTAGTTTGAGC-CAAGAA-T-GTCTTGA-CACA---AAA---TAGCAC----------CAAATGAT-TAAATTGAA-AAAAAA-TGCA-CT--TGCTTT---T-ACT-TA--AGTT-TTTAAT----TAATT--CA-AATCGC-TTCA-TTA-GCGTTTT-AGGGGTGCC--TCCAT-A-CTTTtg
gi|4 : catattaaaagttcatctcccttttagtACCAAATGATTAAATTGAAA-AAAAA-TG-CAC--TTG-CTTT--TAC-------TTAAGTTT-TTAA-TTAATT--CAAA-TCGCTT------------CATT-AGCGTTTT-A--G-GGGTG-CCTCCAT-------ACTTTCGTTG-TAAAA-GTTG-ATTTTGAT-----CAA-TTCAAA-CTATAAA-GGAGCAAT-GAAGGATA--AG-T--TTAGTTTCGGT---AG-ATT-TTC-TGATTATGAAAAAA-ATTGG-ACTGG----ATACTAATCAT-TTAAA-GAG-G-AGAACTTCA-CT--T-CAGAT--T-GGC-AG---ATT-TTGAAA----TAATTT-CATATTCGC-TTCATTTATGCGTTTTCAGGAG-GAT--TACTT-A---TTAC-AT-CAAGGGAGCTCCGCTTCGATTTTTCAAGAGC-CAAcgttgtaaaagttgattttgatcaattcaaactataaaggagcaatgaaggataagtttagtttcggtagattttctgattatgaaaaaaattggactggatactaatcatttaaagaggagaacttcacttcagattggcagattttgaaataatttcatattcgcttcatttatgcgttttcaggaggattacttattacatcaagggagctccgcttcgatttttcaagagccaataagatcctc
gi|5 : catattaaaagttcatctcccttttagtgttgattttccccattttcaaagtgaaaatgaatcattgaagaattgttagtttgagccaagaatgtcttgacacaaaatagcGTACTGG----ATAC-AATCAT-TTAAATGAG-GAAGAACTTCA-CC--TGCATA---T-GGC-AA--T--T-TTTAAAAAAATAATTTTCATATTCGC-TTCATA-A-GCGTTTTCAGGAT-GGT--TACA-----------AT-GAACAGAGCTCCGCTTCGATTTTTCAAGAGC-AAAAGCAACCGCTAT-CCGGTCGCCTTTT-TTAAA-CAAACCAAACACATTCCAATCCC-TG-ATA--GAGTAAACTACA-AAACCAAATGA---AG-A-AC--TTTTTTCGAA-TTACTCATACTTACAAATGTAT-AGATAAACAA--TTGTTGTCTTTTTTCC--TT-----------------GCTCTGAAAACTGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACATCATTTCTCCtaagatcctc
gi|6 : AAATGAAAACAGAAA-AT-C-C--TTG-CATTC-TAC-------TTATATTT-TTTAATTAATTT-CAAATCTGGTT------------CATT-AGCGTTTT-A--G-G-GTG-C-TCCAT-------AC-TT------TAAAA-GTTG-ATTTTGAT-----CAATTTCAAA-CTATAAA-GGAGCAAT-GAA-GATA--AG-T--TTAGTTCGGGT-TGAG-A-T-TTC-TGA-TATGAA-AAA-ATTGGCACTGG----ATACTAATCAT-TTAAA-GAG-GAAGAACTTCA-CC--TTCAGA---T-GGCAAA--TATT-TTGAAA----TAATTTTCATATTCGC-TTCATTT
gi|8 : AGACACATTCCAATTCC-GG-ATA--GAGTAAACCACC-AAACCAAATGATGAAG-A-GCTTTTTTTCCGAA-TTACTCATACTAA--------T------A-CA-------TG-------------TATA------A-TCTATTGCTCTGAAAACAGCCACATTGAGACCAATATGGTC-GCTATGCACAGTAGCAAAATATACCCCTTTTCTCCAT
gi|9 : TTTCCGAA-TTACTCATACTTG--------T-AGATAATCAT--TTTTTGTCTTTTTTCC--TTATA-----TAATTTATTGCTCTGAAAACCGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACATCATTTCTCCATa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GAGAATTCGTGTTACGCTTTATTCATGAGTTCATTACAGTACATTTTATCTCATAAATTATTCATATTAAAGATGACCCCTTTGTTAGTCGTTTGATTTTTCCATATTCTCAAAGTAAAAATGTAATCATATGAAGAAATTTTGCTATTTTCCTCCAATATTGAACCCAATCCATTGATATTCAAATAGAAAGGATAAAAGTGTCTTGAAAA
Alignments
lowQualScore : 1 11111 1 1 1111 11 4444444444444444 11 44444444444 222 1 2222222 111111111 11111 11111 11111 222222 1111 1 11 1111 111 1111111 2 1 222 11 111 22222222 111 22222222
lowQualScore : 3 5 0 9 66666 1 0 7 0 5 1 0000 8 0 11 0000000000000000 1 8 0 11 8 1 00000000000 8 111 8 3 8 0 6666666 333333333 6 66666 6 6 1 6 55555 55555 5 5 5 5 5 5 55 77 333333 2222 1 5 9 5 0 5 66 888 0 66 777 5 5 0000 2 4 111 5 5 66 8888888 1 6 1 6 8 2 3 0 5 4 55 777 1 0 0 8 8 11 8 0 8 8 111 6 44444444 5 5 999 1 111 1 88888888 4
lowQualScore : . . . . ..... . . . . . . .... . . .. ................ . . . .. . . ........... . ... . . . . ....... ......... . ..... . . . . ..... ..... . . . . . . .. .. ...... .... . . . . . . .. ... . .. ... . . .... . . ... . . .. ....... . . . . . . . . . . .. ... . . . . . .. . . . . ... . ........ . . ... . ... . ........ .
lowQualScore : 2 5 8 2 88888 0 8 0 0 0 4 0000 0 8 00 2222222222222222 4 0 8 66 8 4 44444444444 0 000 0 8 0 0 0000000 000000000 7 77777 7 7 0 7 99999 11111 0 7 7 7 7 7 99 99 222222 1111 7 0 4 0 2 0 99 888 0 99 222 0 0 6666 2 4 888 0 0 99 7777777 6 7 0 0 0 5 2 0 0 2 88 555 0 8 8 0 0 00 0 8 0 0 888 7 22222222 7 6 666 4 444 4 66666666 4
consensus : TAATGTCACATTAAATATTGATACAA--CCGGGTCCAGATACTAAAT-ATTAAATGAAGA-AG-AAATT-CAC--TTGGCATNC-TG-------GTTATATTT-TTAAATTAATTTTCAAANTCGCTTTT---CGA-GTCATT-AGCGTTTTC--AG-GAGT-GCCTCCAT-------ACTT-CGTG-AT-AAAAGTTG-ATTTT-----GACCAATTTC-AAACTAAAAA-GGANCAAT-GAAG-A---TAAGTT--TTAGTTCGGGT-CGAG-AT-TT-C-TGAT-ATG--AAA-A---TTGGCACTGG----ATACTAATCAT-TTAAATGAG-GAAGAACTTC-ACC--TGCAT---AT-GGCA-AA--TATT-TTT-AAA----TAATTTTCATATTCGC-TTCATTTA-GCGTTTTCAGGAG-GG--TTACAT-A-ATTTACAA-TGAACAGAGCTCCGCTTCGATTTTTCAAGAGC-AAAAGGAACCGCTATCCGGTCGCCGTTTGTAAAC-CAANCCAGACACATTCCAATCC-CGG-ATA--GAGTAAACTACA-AAACCAAATGAGGAAG-A-AC--TTTTTCCGAA-TTACTCATACT--------TAT-AGATAANCAA--TTTTTGTCTTTTTTCC--TTATA-----TA-TCTATTGCTCTGAAAACCGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACACCATTTCTCCAT
Reference ( family-3592 ) : TAATGTCACATTAAATATTGATACAA--CCGGGNCCNGATACTAAAT-ATTAAATGAAGA-AG-AAATT-CAC--TTGGCATNC-TG-------GTTATATTT-TTAAATTAATTTTCAAANTCGCTTTT---CGA-GTCATT-AGCGTTTTC--AG-GAGT-GCCTCCAT-------ACTT-CGTG-AT-AAAAGTTG-ATTTT-----GACCAATTTC-AAACTAAAAA-GGANCAAT-GAAG-A---TAAGTT--TTAGTTCGGGT-CGAG-AT-TT-C-TGAT-ATG--AAA-A---TTGGCACTGG----ATACTAATCAT-TTAAATGAG-GAAGAACTTC-ACC--TGCAT---AT-GGC--AA--TATT-TTT-AAA----TAATTTTCATATTCGC-TTCATTTA-GCGTTTTCAGGAG-GG--TTACAT-A-ATTTACAA-TGAACAGAGCTCCGCTTCGATTTTTCAAGAGC-AAAAGGAACCGCTAT-CGGTCGCCGTTTGTAAAN-CAANCCAGACACATTCCAATCC-CGG-ATA--GAGTAAACTACA-AAACCAAATGAGGAAG-A-AC--TTTTTCCGAA-TTACTCATACT--------TAT-AGATAATCAA--TTTTTGTCTTTTTTCC--TTATA-----TA-TCTATTGCTCTGAAAACCGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACACCATTTCTCCAT
gi|1 : TAATGTCACATTAAATATTGATACAA--CAAAGTCCAGATACTAAAT-ATTAAATGAAGA-AGAAAATT-CACCATTTGCATACATGGGAGAGAGTTATATTTCTTAAATTCATAATCAAATCAGCTTTTCCACGA-GTCATG-TGCATTTTCATAG-GAGTGGTCTCCAT-------ACTT-CGTGAATAAAAAGTTG-AAATTCATAAGAACCATTTCAAAACTAAAAA-GAGACCAT-GAAG-AAATTAA-TTAATTAATTTGGGT-CGAG-ATGTT-C-TGA--ATG--AAA-A----TGGCACTGGTATAATACTAATCAT-TTAAATGAGAGAAGAATTTCAACC--TGAGTAAAAT-GGCAAAA--TATT-TTTAAAA----TAATTTTCATATTCGCATTCATTTA-GCGTCTTCAGAAG-GGTATTACATGA-ATTAACAATTAAACAGAGCTCCGCTTCGA-ATTTCAAGAGC-AAAAGGAACCGCTAT-CGGTC-CCATTTGTAAAT-CAACCCAG-CACATTTCAATCCAAGG-ATACGAAGTAAACTAAACAAACCAAATGAGGAAG-ATAC--TTTTTCCGAAGTTAC-CATAC---------TATCAGATAATCAA--TTTTTGTCTTTTTTCCATTTA-A-----TA-ATTA-TGCTCTTAAAAGCGCCATATTGA-ACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACACCATTTCTCCAT
gi|10 : TCAT-TTAAATGAG-GAAGAACTTC-ACC--TGCAT---CT-GGCA-AA--TATT-TTT-AAA----TAATTTTCGTATTCGC-TTCA-TAA-GCGTTTTCAGAAG-AG--TTACAT-A-A-TTACAA-TGAACAGAGCTCa
gi|11 : -AGATAAACAA--TTTTTGTCTTTTTTCC--TTATAAATTATAATCTATTGCTCTGAAAACCGCCATATCGAGACCAATATGGC-----A--------AGCAAAGTGTATATGATTTCTCCAT
gi|12 : CAATATGGCC-GCTATGCAAATTAGCAAAATGTACATGATTTCTCCA
gi|13 : ATGGCC-GCTATGCAAATTAGCAAAGTGTACGCCATTTCTCCAT
gi|14 : TAATGTCACATTAAATATTGATACAA--CCGGGTCCTGA
gi|15 : tAAG-A---TAAGTT--T-AGTTCGGGT-CGAG-AT-TT-C-TTTT-ATG--
gi|16 : TATTCGC-TTCATA-A-GCGTTTTCAGGAG-GG--T
gi|2 : TAATGTCACATTAA---TTGAT-TAA--C--GGGCCAGATACTAAAT-ATTAAATGAAGA-AG-AAATTTCAC--TTGGCATA--TG-------GTTATATTT-TTAAATTAATTTTCAAAATCGCTTTC---CGA-GTCATT-AGCATTTTC--AA-GAGT-GC-TCCAT-------ACTT-CGTG-AT-AAAAGTTG-ATTTT-----GACCAATTTC-AAACTAAAA--GAACCATT-GAAG-A---TAATTT--TTAGTTCGGAT-CGA--AT-TT-C-GGAT-ATG--AAA-A---TTGGCACTGG----ATACTAATCAT-TTAAATGAG-AAAGAATTTC-ACC--TGCAT---AT-AGC--AA--TATT-TTT-AAA----TAATTTTC-TATTCGC-TTCATTTA-GCGTTTTCAGAAG-GG--TTACAT-A-ATTTACAA-TTAACAGAGCTCCGCTTCGAATTTTCAAAAGC-AAAAGGAAC--CTATCCGGTC-CCATTTGTAA---CAATCCAGACACATTCCAATCC-TGG-ATA--GAGTAAACTACA-AAACC-AATGAGGAAG-A-AC--TTTTTCCGAA-TTACTCA-ACT--------TAT-AGATAATCAATTTTTTTATATTTTTTCC--TTATA-----TA-TCTATTGCTCTGAAAACCGCCATTTTGAGA-CAATATGGCC-GCTATGCAAATTAGC-AAGTGTACACCA-TTCTCCAT
gi|3 : TAATGCGAC-TTAA-TGTAGACCCAAAACTGGGTCC-GATAC-AAAT-ATTAAAT------------TT-CAC--TTG-CAT---TG-------GCTAAATAA-TTGAATTAAATTTCAAAGTTGCTTCT---CGATGTCATTTAG-ATTTTC--AGAGAGT-GCCTCTATTAGGCCTACTT-CATG-AA-AAAAGTTGTATTTT-----GACCACTTTC-AAACTAAAAA-GGAACCATTGACG-G---TAA--T--TTAGTTCGGGTTCGAG-AT-GT-C-TGAT-ATG--AAATA---CTGGCACTGG----ATACTAATCATGTTAAA-GAG-GAAGA-CCTC-ACCGTTGCAT---ATTGGC--AAAATATTATTT-AAA----TA-TTTTCTTATTCGC-TTCATA-A-GCGTTTTCAGGAG-GG----AC-T-AGATTGACAA-TGAACAGAGCTCCGCTTCGATTTTTCAAGAGCGAAAAGGAACCGC-AT-CGGTCGCCGTT---AAACGCAAACCAAACACAT--CAATCC-CGGGATA--GAGTAAACTACA-AATCCAAATGAGAAAGCA-AC---TTTTCCGAA-TTACTCATACT--------TAT-AGATAAAC-A--TTTTT-TCCTTT---A--CTATA------A-TCTATTGTCCTGAAAACCTCC-TA-TGAG-CCAATATGGCCGGCTATGCAAATTAGCAAAATGTACA
gi|4 : GTTG-ATTTT-----CCCCATTTTC-AAAGTGAAAATGAATCATT-GAAG------AATTG--TTAGTTTGAGC-CAAGAAT-GT-CTTGAC-ACA--AAA------TAGCAC----------CAAATGAT-TAAATTGAA-AAAAAA-TGC-ACT--TGCTT---TT-ACT--TA--AGTT-TTT-AAT----TAA--TTCA-AATCGC-TTCA-TTA-GCGTTTT-AGGGGTGC--CTCCAT-A-CTTTtg
gi|4 : catattaaaagttcatctcccttttagtACCAAATGATTAAATTGAAA-AA-AAATG-CAC--TTG-C-TTT-TA-------CTTAAGTTT-TTAA-TTAATT--CAAA-TCGCTT-----------CATT-AGCGTTTT---AG-GGGT-GCCTCCAT-------ACTTTCGTT-GT-AAAAGTTG-ATTTT-----GATCAATT-C-AAACTATAAA-GGAGCAAT-GAAGGA---TAAGTT--T-AGTTTCGGT---AG-AT-TTTC-TGATTATG--AAA-AAAATTGG-ACTGG----ATACTAATCAT-TTAAA-GAG-GA-GAACTTC-ACT--T-CAG---ATTGGC--AG---ATT-TTG-AAA----TAATTT-CATATTCGC-TTCATTTATGCGTTTTCAGGAG-GA--TTACTT-A---TTACA--TCAAGGGAGCTCCGCTTCGATTTTTCAAGAGC-CAAcgttgtaaaagttgattttgatcaattcaaactataaaggagcaatgaaggataagtttagtttcggtagattttctgattatgaaaaaaattggactggatactaatcatttaaagaggagaacttcacttcagattggcagattttgaaataatttcatattcgcttcatttatgcgttttcaggaggattacttattacatcaagggagctccgcttcgatttttcaagagccaataagatcctc
gi|5 : catattaaaagttcatctcccttttagtgttgattttccccattttcaaagtgaaaatgaatcattgaagaattgttagtttgagccaagaatgtcttgacacaaaatagcGTACTGG----ATAC-AATCAT-TTAAATGAG-GAAGAACTTC-ACC--TGCAT---AT-GGC--AA--T--T-TTT-AAAAAAATAATTTTCATATTCGC-TTCATA-A-GCGTTTTCAGGAT-GG--TTAC-----------AA-TGAACAGAGCTCCGCTTCGATTTTTCAAGAGC-AAAAGCAACCGCTATCCGGTCGCCTTTTTTAAA--CAAACCAAACACATTCCAATCC-CTG-ATA--GAGTAAACTACA-AAACCAAAT---GAAG-A-AC--TTTTTTCGAA-TTACTCATACTTACAAATGTAT-AGATAAACAA--TTGTTGTCTTTTTTCC-------------------TTGCTCTGAAAACTGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACATCATTTCTCCtaagatcctc
gi|6 : AAATGAAAACAG-AAAAT-C-C--TTG-CATTC-TA-------CTTATATTT-TTTAATTAATTT-CAAATCTGGTT-----------CATT-AGCGTTTT---AG-G-GT-GC-TCCAT-------ACTT-------T-AAAAGTTG-ATTTT-----GATCAATTTC-AAACTATAAA-GGAGCAAT-GAAG-A---TAAG-T--TTAGTTCGGGT-TGAG-AT-TT-C-TGAT-ATGAAAAA-A---TTGGCACTGG----ATACTAATCAT-TTAAA-GAG-GAAGAACTTC-ACC--TTCAG---AT-GGCA-AA--TATT-TTG-AAA----TAATTTTCATATTCGC-TTCATTT
gi|8 : AGACACATTCCAATTC-CGG-ATA--GAGTAAACCACC-AAACCAAATGATGAAG-A-GCTTTTTTTCCGAA-TTACTCATACT--------AAT-A------CA-------TG-------------TATA------A-TCTATTGCTCTGAAAACAGCCACATTGAGACCAATATGGTC-GCTATGCACAGTAGCAAAATATACCCCTTTTCTCCAT
gi|9 : TTTCCGAA-TTACTCATACT--------TGT-AGATAATCAT--TTTTTGTCTTTTTTCC--TTATA-----TAATTTATTGCTCTGAAAACCGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACATCATTTCTCCATa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GAGAATTCGTGTTACGCTTTATTCATGAGTTCATTACAGTACATTTTATCTCATAAATTATTCATATTAAAGATGACCCCTTTGTTAGTCGTTTGATTTTTCCATATTCTCAAAGTAAAAATGTAATCATATGAAGAAATTTTGCTATTTTCCTCCAATATTGAACCCAATCCATTGATATTCAAATAGAAAGGATAAAAGTGTCTTGAAAA
Alignments
lowQualScore : 1 1111 1 1111 11 4444444444444444 11 44444444444 222 1 2222222 111111111 11111 11111 1 1 333333 1111 1 1111 1111 111 11111 1 1111 11 111 22222222 22222222
lowQualScore : 3 5 0 9 6666 3 9 7 0 5 1 0000 8 0 11 0000000000000000 1 8 0 11 8 1 00000000000 8 111 8 3 8 0 6666666 333333333 6 66666 6 6 1 6 55555 1 77 2 5 5 5 5 5 55 222222 2222 1 5 9 5 0 5 66 888 0 5 0000 5 5 0000 2 4 111 5 5 66 1 55555 1 6 1 6 8 2 3 55 5 4 55 6666 1 0 0 8 8 11 8 0 5 8 8 111 6 44444444 5 3 999 1 77 1 88888888 1 4
lowQualScore : . . . . .... . . . . . . .... . . .. ................ . . . .. . . ........... . ... . . . . ....... ......... . ..... . . . . ..... . .. . . . . . . .. ...... .... . . . . . . .. ... . . .... . . .... . . ... . . .. . ..... . . . . . . . .. . . .. .... . . . . . .. . . . . . ... . ........ . . ... . .. . ........ . .
lowQualScore : 2 5 8 2 5555 2 8 0 0 0 4 0000 0 8 00 2222222222222222 4 0 8 66 8 4 44444444444 0 000 0 8 0 0 0000000 000000000 7 77777 7 7 0 7 99999 4 99 0 7 7 7 7 7 99 333333 1111 7 0 4 0 2 0 99 888 0 0 4444 0 0 6666 2 4 888 0 0 99 7 66666 6 7 0 0 0 5 2 00 0 2 88 0000 0 8 8 0 0 00 0 8 0 0 0 888 7 22222222 7 0 666 4 99 4 66666666 4 4
consensus : TAATGTCACATTAAATATTGATACAA--CCGGGTCCAGATACTAAAT-ATTAAATGAAGA-AG-AAATT-CAC--TTGGCATNC-TG-------GTTATATTT-TTAAATTAATTTTCAAANTCGCTTTT---CGA-GTCATT-AGCGTTTTC--AG-GAGT-GCCTCCAT-------ACTT-CGTG-AT-AAAAGTTG-ATTTT-----GACCAATTTC-AAACTAAAAA-GGANCAAT-GAAG-A---TAAGTT--TTAGTTCGGGT-CGAG-AT-TT-C-TGAT-ATGAAA-A---TTGGCACTGG----ATACTAATCAT-TTAAATGAG-GAAGAACTTC-ACC--TGCAT---AT-GGC-AAA-TATT-TTT-AAA----TAATTTTCATATTCGC-TTCATTTA-GCGTTTTCAGGAG-GG--TTACAT-A-ATTTACAA-TGAACAGAGCTCCGCTTCGATTTTTCAAGAGC-AAAAGGAACCGCTATCCGGTCGCCGTTTGTAAAC-CAANCCAGACACATTCCAATCC-CGG-ATA--GAGTAAACTACA-AAACCAAATGAGGAAG-A-AC--TTTTTCCGAA-TTACTCATACTTA--------T-AGATAANCAA--TTTTTGTCTTTTTTCC--TTATA-----TA-TCTATTGCTCTGAAAACCGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACACCATTTCTCCAT
Reference ( family-3592 ) : TAATGTCACATTAAATATTGATACAA--CCGGGTCCAGATACTAAAT-ATTAAATGAAGA-AG-AAATT-CAC--TTGGCATNC-TG-------GTTATATTT-TTAAATTAATTTTCAAANTCGCTTTT---CGA-GTCATT-AGCGTTTTC--AG-GAGT-GCCTCCAT-------ACTT-CGTG-AT-AAAAGTTG-ATTTT-----GACCAATTTC-AAACTAAAAA-GGANCAAT-GAAG-A---TAAGTT--TTAGTTCGGGT-CGAG-AT-TT-C-TGAT-ATGAAA-A---TTGGCACTGG----ATACTAATCAT-TTAAATGAG-GAAGAACTTC-ACC--TGCAT---AT-GGC-AAA-TATT-TTT-AAA----TAATTTTCATATTCGC-TTCATTTA-GCGTTTTCAGGAG-GG--TTACAT-A-ATTTACAA-TGAACAGAGCTCCGCTTCGATTTTTCAAGAGC-AAAAGGAACCGCTATCCGGTCGCCGTTTGTAAAC-CAANCCAGACACATTCCAATCC-CGG-ATA--GAGTAAACTACA-AAACCAAATGAGGAAG-A-AC--TTTTTCCGAA-TTACTCATACTTA--------T-AGATAANCAA--TTTTTGTCTTTTTTCC--TTATA-----TA-TCTATTGCTCTGAAAACCGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACACCATTTCTCCAT
gi|1 : TAATGTCACATTAAATATTGATACAA--CAAAGTCCAGATACTAAAT-ATTAAATGAAGA-AGAAAATT-CACCATTTGCATACATGGGAGAGAGTTATATTTCTTAAATTCATAATCAAATCAGCTTTTCCACGA-GTCATG-TGCATTTTCATAG-GAGTGGTCTCCAT-------ACTT-CGTGAATAAAAAGTTG-AAATTCATAAGAACCATTTCAAAACTAAAAA-GAGACCAT-GAAG-AAATTAA-TTAATTAATTTGGGT-CGAG-ATGTT-C-TGA--ATGAAA-A----TGGCACTGGTATAATACTAATCAT-TTAAATGAGAGAAGAATTTCAACC--TGAGTAAAAT-GGCAAAA-TATT-TTTAAAA----TAATTTTCATATTCGCATTCATTTA-GCGTCTTCAGAAG-GGTATTACATGA-ATTAACAATTAAACAGAGCTCCGCTTCGA-ATTTCAAGAGC-AAAAGGAACCGCTAT-CGGTC-CCATTTGTAAAT-CAACCCAG-CACATTTCAATCCAAGG-ATACGAAGTAAACTAAACAAACCAAATGAGGAAG-ATAC--TTTTTCCGAAGTTAC-CATAC-TA--------TCAGATAATCAA--TTTTTGTCTTTTTTCCATTTA-A-----TA-ATTA-TGCTCTTAAAAGCGCCATATTGA-ACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACACCATTTCTCCAT
gi|10 : TCAT-TTAAATGAG-GAAGAACTTC-ACC--TGCAT---CT-GGC-AAA-TATT-TTT-AAA----TAATTTTCGTATTCGC-TTCA-TAA-GCGTTTTCAGAAG-AG--TTACAT-A-A-TTACAA-TGAACAGAGCTCa
gi|11 : -AGATAAACAA--TTTTTGTCTTTTTTCC--TTATAAATTATAATCTATTGCTCTGAAAACCGCCATATCGAGACCAATATGGC-----A--------AGCAAAGTGTATATGATTTCTCCAT
gi|12 : CAATATGGCC-GCTATGCAAATTAGCAAAATGTACATGATTTCTCCA
gi|13 : ATGGCC-GCTATGCAAATTAGCAAAGTGTACGCCATTTCTCCAT
gi|14 : TAATGTCACATTAAATATTGATACAA--CCGGGTCCTGA
gi|15 : tAAG-A---TAAGTT--T-AGTTCGGGT-CGAG-AT-TT-C-TTTT-ATG
gi|16 : TATTCGC-TTCATA-A-GCGTTTTCAGGAG-GG--T
gi|2 : TAATGTCACATTAA---TTGAT-TAA--C-GGG-CCAGATACTAAAT-ATTAAATGAAGA-AG-AAATTTCAC--TTGGCATA--TG-------GTTATATTT-TTAAATTAATTTTCAAAATCGCTTTC---CGA-GTCATT-AGCATTTTC--AA-GAGT-GC-TCCAT-------ACTT-CGTG-AT-AAAAGTTG-ATTTT-----GACCAATTTC-AAACTAAAA--GAACCATT-GAAG-A---TAATTT--TTAGTTCGGAT-CGA--AT-TT-C-GGAT-ATGAAA-A---TTGGCACTGG----ATACTAATCAT-TTAAATGAG-AAAGAATTTC-ACC--TGCAT---AT-AGC-AA--TATT-TTT-AAA----TAATTTTC-TATTCGC-TTCATTTA-GCGTTTTCAGAAG-GG--TTACAT-A-ATTTACAA-TTAACAGAGCTCCGCTTCGAATTTTCAAAAGC-AAAAGGAAC--CTATCCGGTC-CCATTTGTAA---CAATCCAGACACATTCCAATCC-TGG-ATA--GAGTAAACTACA-AAACC-AATGAGGAAG-A-AC--TTTTTCCGAA-TTACTCA-ACTTA--------T-AGATAATCAATTTTTTTATATTTTTTCC--TTATA-----TA-TCTATTGCTCTGAAAACCGCCATTTTGAGA-CAATATGGCC-GCTATGCAAATTAGC-AAGTGTACACCA-TTCTCCAT
gi|3 : TAATGCGAC-TTAA-TGTAGACCCAAAACTGGGTCC-GATAC-AAAT-ATTAAAT------------TT-CAC--TTG-CAT---TG-------GCTAAATAA-TTGAATTAAATTTCAAAGTTGCTTCT---CGATGTCATTTAG-ATTTTC--AGAGAGT-GCCTCTATTAGGCCTACTT-CATG-AA-AAAAGTTGTATTTT-----GACCACTTTC-AAACTAAAAA-GGAACCATTGACG-G---TAA--T--TTAGTTCGGGTTCGAG-AT-GT-C-TGAT-ATGAAATA---CTGGCACTGG----ATACTAATCATGTTAAA-GAG-GAAGA-CCTC-ACCGTTGCAT---ATTGGC-AAAATATTATTT-AAA----TA-TTTTCTTATTCGC-TTCATA-A-GCGTTTTCAGGAG-GG----AC-T-AGATTGACAA-TGAACAGAGCTCCGCTTCGATTTTTCAAGAGCGAAAAGGAACCGC-ATC-GGTCGCCGTT---AAACGCAAACCAAACACAT--CAATCC-CGGGATA--GAGTAAACTACA-AATCCAAATGAGAAAGCA-AC---TTTTCCGAA-TTACTCATACTTA--------T-AGATAAAC-A--TTTTT-TCCTTT---A--CTATA------A-TCTATTGTCCTGAAAACCTCC-TA-TGAG-CCAATATGGCCGGCTATGCAAATTAGCAAAATGTACA
gi|4 : GTTG-ATTTT-----CCCCATTTTC-AAAGTGAAAATGAATCATT-GAAG------AATTG--TTAGTTTGAGC-CAAGAAT-GT-CTTGAC-ACAAAA------TAGCAC----------CAAATGAT-TAAATTGAA-AAAAAA-TGC-ACT--TGCTT---TT-ACT-TAA--GTT-TTT-AAT----TAA--TTCA-AATCGC-TTCA-TTA-GCGTTTT-AGGGGTGC--CTCCAT-A-CTTTtg
gi|4 : catattaaaagttcatctcccttttagtACCAAATGATTAAATTGAAA-AA-AAATG-CAC--TTG-C-TTT-TA-------CTTAAGTTT-TTAA-TTAATT--CAAA-TCGCTT-----------CATT-AGCGTTTT---AG-GGGT-GCCTCCAT-------ACTTTCGTT-GT-AAAAGTTG-ATTTT-----GATCAATT-C-AAACTATAAA-GGAGCAAT-GAAGGA---TAAGTT--T-AGTTTCGGT---AG-AT-TTTC-TGATTATGAAA-AAAATTGG-ACTGG----ATACTAATCAT-TTAAA-GAG-GA-GAACTTC-ACT--T-CAG---ATTGGC-AGA-T--T-TTG-AAA----TAATTT-CATATTCGC-TTCATTTATGCGTTTTCAGGAG-GA--TTACTT-A---TTACA--TCAAGGGAGCTCCGCTTCGATTTTTCAAGAGC-CAAcgttgtaaaagttgattttgatcaattcaaactataaaggagcaatgaaggataagtttagtttcggtagattttctgattatgaaaaaaattggactggatactaatcatttaaagaggagaacttcacttcagattggcagattttgaaataatttcatattcgcttcatttatgcgttttcaggaggattacttattacatcaagggagctccgcttcgatttttcaagagccaataagatcctc
gi|5 : catattaaaagttcatctcccttttagtgttgattttccccattttcaaagtgaaaatgaatcattgaagaattgttagtttgagccaagaatgtcttgacacaaaatagcGTACTGG----ATAC-AATCAT-TTAAATGAG-GAAGAACTTC-ACC--TGCAT---AT-GGC-AA----TT-TTT-AAAAAAATAATTTTCATATTCGC-TTCATA-A-GCGTTTTCAGGAT-GG--TTACA-----------A-TGAACAGAGCTCCGCTTCGATTTTTCAAGAGC-AAAAGCAACCGCTATCCGGTCGCCTTTTTTAAAC--AAACCAAACACATTCCAATCC-CTG-ATA--GAGTAAACTACA-AAACCAAATGA---AG-A-AC--TTTTTTCGAA-TTACTCATACTTACAAATGTAT-AGATAAACAA--TTGTTGTCTTTTTTCC--TT-----------------GCTCTGAAAACTGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACATCATTTCTCCtaagatcctc
gi|6 : AAATGAAAACAG-AAAAT-C-C--TTG-CATTC-TA-------CTTATATTT-TTTAATTAATTT-CAAATCTGGTT-----------CATT-AGCGTTTT---AG-G-GT-GC-TCCAT-------ACTT-------T-AAAAGTTG-ATTTT-----GATCAATTTC-AAACTATAAA-GGAGCAAT-GAAG-A---TAAGTT--T-AGTTCGGGT-TGAG-AT-TT-C-TGAT-ATGAAA-AAA-TTGGCACTGG----ATACTAATCAT-TTAAA-GAG-GAAGAACTTC-ACC--TTCAG---AT-GGC-AAA-TATT-TTG-AAA----TAATTTTCATATTCGC-TTCATTT
gi|8 : AGACACATTCCAATTC-CGG-ATA--GAGTAAACCACC-AAACCAAATGATGAAG-A-GCTTTTTTTCCGAA-TTACTCATACTAA--------T-A------CA-------TG-------------TATA------A-TCTATTGCTCTGAAAACAGCCACATTGAGACCAATATGGTC-GCTATGCACAGTAGCAAAATATACCCCTTTTCTCCAT
gi|9 : TTTCCGAA-TTACTCATACTTG--------T-AGATAATCAT--TTTTTGTCTTTTTTCC--TTATA-----TAATTTATTGCTCTGAAAACCGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACATCATTTCTCCATa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GAGAATTCGTGTTACGCTTTATTCATGAGTTCATTACAGTACATTTTATCTCATAAATTATTCATATTAAAGATGACCCCTTTGTTAGTCGTTTGATTTTTCCATATTCTCAAAGTAAAAATGTAATCATATGAAGAAATTTTGCTATTTTCCTCCAATATTGAACCCAATCCATTGATATTCAAATAGAAAGGATAAAAGTGTCTTGAAAA
Alignments
lowQualScore : 1 1111 1 1111 11 4444444444444444 11 44444444444 222 1 2222222 111111111 11111 11111 1 1 333333 1111 1 1111 1111 111 11111 1 1111 11 111 22222222 22222222
lowQualScore : 3 5 0 9 6666 3 9 7 0 5 1 0000 8 0 11 0000000000000000 1 8 0 11 8 1 00000000000 8 111 8 3 8 0 6666666 333333333 6 66666 6 6 1 6 55555 1 77 2 5 5 5 5 5 55 222222 2222 1 5 9 5 0 5 66 888 0 5 0000 5 5 0000 2 4 111 5 5 66 1 55555 1 6 1 6 8 2 3 55 5 4 55 6666 1 0 0 8 8 11 8 0 5 8 8 111 6 44444444 5 3 999 1 77 1 88888888 1 4
lowQualScore : . . . . .... . . . . . . .... . . .. ................ . . . .. . . ........... . ... . . . . ....... ......... . ..... . . . . ..... . .. . . . . . . .. ...... .... . . . . . . .. ... . . .... . . .... . . ... . . .. . ..... . . . . . . . .. . . .. .... . . . . . .. . . . . . ... . ........ . . ... . .. . ........ . .
lowQualScore : 2 5 8 2 5555 2 8 0 0 0 4 0000 0 8 00 2222222222222222 4 0 8 66 8 4 44444444444 0 000 0 8 0 0 0000000 000000000 7 77777 7 7 0 7 99999 4 99 0 7 7 7 7 7 99 333333 1111 7 0 4 0 2 0 99 888 0 0 4444 0 0 6666 2 4 888 0 0 99 7 66666 6 7 0 0 0 5 2 00 0 2 88 0000 0 8 8 0 0 00 0 8 0 0 0 888 7 22222222 7 0 666 4 99 4 66666666 4 4
consensus : TAATGTCACATTAAATATTGATACAA--CCGGGTCCAGATACTAAAT-ATTAAATGAAGA-AG-AAATT-CAC--TTGGCATNC-TG-------GTTATATTT-TTAAATTAATTTTCAAANTCGCTTTT---CGA-GTCATT-AGCGTTTTC--AG-GAGT-GCCTCCAT-------ACTT-CGTG-AT-AAAAGTTG-ATTTT-----GACCAATTTC-AAACTAAAAA-GGANCAAT-GAAG-A---TAAGTT--TTAGTTCGGGT-CGAG-AT-TT-C-TGAT-ATGAAA-A---TTGGCACTGG----ATACTAATCAT-TTAAATGAG-GAAGAACTTC-ACC--TGCAT---AT-GGC-AAA-TATT-TTT-AAA----TAATTTTCATATTCGC-TTCATTTA-GCGTTTTCAGGAG-GG--TTACAT-A-ATTTACAA-TGAACAGAGCTCCGCTTCGATTTTTCAAGAGC-AAAAGGAACCGCTATCCGGTCGCCGTTTGTAAAC-CAANCCAGACACATTCCAATCC-CGG-ATA--GAGTAAACTACA-AAACCAAATGAGGAAG-A-AC--TTTTTCCGAA-TTACTCATACTTA--------T-AGATAANCAA--TTTTTGTCTTTTTTCC--TTATA-----TA-TCTATTGCTCTGAAAACCGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACACCATTTCTCCAT
Reference ( family-3592 ) : TAATGTCACATTAAATATTGATACAA--CCGGGTCCAGATACTAAAT-ATTAAATGAAGA-AG-AAATT-CAC--TTGGCATNC-TG-------GTTATATTT-TTAAATTAATTTTCAAANTCGCTTTT---CGA-GTCATT-AGCGTTTTC--AG-GAGT-GCCTCCAT-------ACTT-CGTG-AT-AAAAGTTG-ATTTT-----GACCAATTTC-AAACTAAAAA-GGANCAAT-GAAG-A---TAAGTT--TTAGTTCGGGT-CGAG-AT-TT-C-TGAT-ATGAAA-A---TTGGCACTGG----ATACTAATCAT-TTAAATGAG-GAAGAACTTC-ACC--TGCAT---AT-GGC-AAA-TATT-TTT-AAA----TAATTTTCATATTCGC-TTCATTTA-GCGTTTTCAGGAG-GG--TTACAT-A-ATTTACAA-TGAACAGAGCTCCGCTTCGATTTTTCAAGAGC-AAAAGGAACCGCTATCCGGTCGCCGTTTGTAAAC-CAANCCAGACACATTCCAATCC-CGG-ATA--GAGTAAACTACA-AAACCAAATGAGGAAG-A-AC--TTTTTCCGAA-TTACTCATACTTA--------T-AGATAANCAA--TTTTTGTCTTTTTTCC--TTATA-----TA-TCTATTGCTCTGAAAACCGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACACCATTTCTCCAT
gi|1 : TAATGTCACATTAAATATTGATACAA--CAAAGTCCAGATACTAAAT-ATTAAATGAAGA-AGAAAATT-CACCATTTGCATACATGGGAGAGAGTTATATTTCTTAAATTCATAATCAAATCAGCTTTTCCACGA-GTCATG-TGCATTTTCATAG-GAGTGGTCTCCAT-------ACTT-CGTGAATAAAAAGTTG-AAATTCATAAGAACCATTTCAAAACTAAAAA-GAGACCAT-GAAG-AAATTAA-TTAATTAATTTGGGT-CGAG-ATGTT-C-TGA--ATGAAA-A----TGGCACTGGTATAATACTAATCAT-TTAAATGAGAGAAGAATTTCAACC--TGAGTAAAAT-GGCAAAA-TATT-TTTAAAA----TAATTTTCATATTCGCATTCATTTA-GCGTCTTCAGAAG-GGTATTACATGA-ATTAACAATTAAACAGAGCTCCGCTTCGA-ATTTCAAGAGC-AAAAGGAACCGCTAT-CGGTC-CCATTTGTAAAT-CAACCCAG-CACATTTCAATCCAAGG-ATACGAAGTAAACTAAACAAACCAAATGAGGAAG-ATAC--TTTTTCCGAAGTTAC-CATAC-TA--------TCAGATAATCAA--TTTTTGTCTTTTTTCCATTTA-A-----TA-ATTA-TGCTCTTAAAAGCGCCATATTGA-ACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACACCATTTCTCCAT
gi|10 : TCAT-TTAAATGAG-GAAGAACTTC-ACC--TGCAT---CT-GGC-AAA-TATT-TTT-AAA----TAATTTTCGTATTCGC-TTCA-TAA-GCGTTTTCAGAAG-AG--TTACAT-A-A-TTACAA-TGAACAGAGCTCa
gi|11 : -AGATAAACAA--TTTTTGTCTTTTTTCC--TTATAAATTATAATCTATTGCTCTGAAAACCGCCATATCGAGACCAATATGGC-----A--------AGCAAAGTGTATATGATTTCTCCAT
gi|12 : CAATATGGCC-GCTATGCAAATTAGCAAAATGTACATGATTTCTCCA
gi|13 : ATGGCC-GCTATGCAAATTAGCAAAGTGTACGCCATTTCTCCAT
gi|14 : TAATGTCACATTAAATATTGATACAA--CCGGGTCCTGA
gi|15 : tAAG-A---TAAGTT--T-AGTTCGGGT-CGAG-AT-TT-C-TTTT-ATG
gi|16 : TATTCGC-TTCATA-A-GCGTTTTCAGGAG-GG--T
gi|2 : TAATGTCACATTAA---TTGAT-TAA--C-GGG-CCAGATACTAAAT-ATTAAATGAAGA-AG-AAATTTCAC--TTGGCATA--TG-------GTTATATTT-TTAAATTAATTTTCAAAATCGCTTTC---CGA-GTCATT-AGCATTTTC--AA-GAGT-GC-TCCAT-------ACTT-CGTG-AT-AAAAGTTG-ATTTT-----GACCAATTTC-AAACTAAAA--GAACCATT-GAAG-A---TAATTT--TTAGTTCGGAT-CGA--AT-TT-C-GGAT-ATGAAA-A---TTGGCACTGG----ATACTAATCAT-TTAAATGAG-AAAGAATTTC-ACC--TGCAT---AT-AGC-AA--TATT-TTT-AAA----TAATTTTC-TATTCGC-TTCATTTA-GCGTTTTCAGAAG-GG--TTACAT-A-ATTTACAA-TTAACAGAGCTCCGCTTCGAATTTTCAAAAGC-AAAAGGAAC--CTATCCGGTC-CCATTTGTAA---CAATCCAGACACATTCCAATCC-TGG-ATA--GAGTAAACTACA-AAACC-AATGAGGAAG-A-AC--TTTTTCCGAA-TTACTCA-ACTTA--------T-AGATAATCAATTTTTTTATATTTTTTCC--TTATA-----TA-TCTATTGCTCTGAAAACCGCCATTTTGAGA-CAATATGGCC-GCTATGCAAATTAGC-AAGTGTACACCA-TTCTCCAT
gi|3 : TAATGCGAC-TTAA-TGTAGACCCAAAACTGGGTCC-GATAC-AAAT-ATTAAAT------------TT-CAC--TTG-CAT---TG-------GCTAAATAA-TTGAATTAAATTTCAAAGTTGCTTCT---CGATGTCATTTAG-ATTTTC--AGAGAGT-GCCTCTATTAGGCCTACTT-CATG-AA-AAAAGTTGTATTTT-----GACCACTTTC-AAACTAAAAA-GGAACCATTGACG-G---TAA--T--TTAGTTCGGGTTCGAG-AT-GT-C-TGAT-ATGAAATA---CTGGCACTGG----ATACTAATCATGTTAAA-GAG-GAAGA-CCTC-ACCGTTGCAT---ATTGGC-AAAATATTATTT-AAA----TA-TTTTCTTATTCGC-TTCATA-A-GCGTTTTCAGGAG-GG----AC-T-AGATTGACAA-TGAACAGAGCTCCGCTTCGATTTTTCAAGAGCGAAAAGGAACCGC-ATC-GGTCGCCGTT---AAACGCAAACCAAACACAT--CAATCC-CGGGATA--GAGTAAACTACA-AATCCAAATGAGAAAGCA-AC---TTTTCCGAA-TTACTCATACTTA--------T-AGATAAAC-A--TTTTT-TCCTTT---A--CTATA------A-TCTATTGTCCTGAAAACCTCC-TA-TGAG-CCAATATGGCCGGCTATGCAAATTAGCAAAATGTACA
gi|4 : GTTG-ATTTT-----CCCCATTTTC-AAAGTGAAAATGAATCATT-GAAG------AATTG--TTAGTTTGAGC-CAAGAAT-GT-CTTGAC-ACAAAA------TAGCAC----------CAAATGAT-TAAATTGAA-AAAAAA-TGC-ACT--TGCTT---TT-ACT-TAA--GTT-TTT-AAT----TAA--TTCA-AATCGC-TTCA-TTA-GCGTTTT-AGGGGTGC--CTCCAT-A-CTTTtg
gi|4 : catattaaaagttcatctcccttttagtACCAAATGATTAAATTGAAA-AA-AAATG-CAC--TTG-C-TTT-TA-------CTTAAGTTT-TTAA-TTAATT--CAAA-TCGCTT-----------CATT-AGCGTTTT---AG-GGGT-GCCTCCAT-------ACTTTCGTT-GT-AAAAGTTG-ATTTT-----GATCAATT-C-AAACTATAAA-GGAGCAAT-GAAGGA---TAAGTT--T-AGTTTCGGT---AG-AT-TTTC-TGATTATGAAA-AAAATTGG-ACTGG----ATACTAATCAT-TTAAA-GAG-GA-GAACTTC-ACT--T-CAG---ATTGGC-AGA-T--T-TTG-AAA----TAATTT-CATATTCGC-TTCATTTATGCGTTTTCAGGAG-GA--TTACTT-A---TTACA--TCAAGGGAGCTCCGCTTCGATTTTTCAAGAGC-CAAcgttgtaaaagttgattttgatcaattcaaactataaaggagcaatgaaggataagtttagtttcggtagattttctgattatgaaaaaaattggactggatactaatcatttaaagaggagaacttcacttcagattggcagattttgaaataatttcatattcgcttcatttatgcgttttcaggaggattacttattacatcaagggagctccgcttcgatttttcaagagccaataagatcctc
gi|5 : catattaaaagttcatctcccttttagtgttgattttccccattttcaaagtgaaaatgaatcattgaagaattgttagtttgagccaagaatgtcttgacacaaaatagcGTACTGG----ATAC-AATCAT-TTAAATGAG-GAAGAACTTC-ACC--TGCAT---AT-GGC-AA----TT-TTT-AAAAAAATAATTTTCATATTCGC-TTCATA-A-GCGTTTTCAGGAT-GG--TTACA-----------A-TGAACAGAGCTCCGCTTCGATTTTTCAAGAGC-AAAAGCAACCGCTATCCGGTCGCCTTTTTTAAAC--AAACCAAACACATTCCAATCC-CTG-ATA--GAGTAAACTACA-AAACCAAATGA---AG-A-AC--TTTTTTCGAA-TTACTCATACTTACAAATGTAT-AGATAAACAA--TTGTTGTCTTTTTTCC--TT-----------------GCTCTGAAAACTGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACATCATTTCTCCtaagatcctc
gi|6 : AAATGAAAACAG-AAAAT-C-C--TTG-CATTC-TA-------CTTATATTT-TTTAATTAATTT-CAAATCTGGTT-----------CATT-AGCGTTTT---AG-G-GT-GC-TCCAT-------ACTT-------T-AAAAGTTG-ATTTT-----GATCAATTTC-AAACTATAAA-GGAGCAAT-GAAG-A---TAAGTT--T-AGTTCGGGT-TGAG-AT-TT-C-TGAT-ATGAAA-AAA-TTGGCACTGG----ATACTAATCAT-TTAAA-GAG-GAAGAACTTC-ACC--TTCAG---AT-GGC-AAA-TATT-TTG-AAA----TAATTTTCATATTCGC-TTCATTT
gi|8 : AGACACATTCCAATTC-CGG-ATA--GAGTAAACCACC-AAACCAAATGATGAAG-A-GCTTTTTTTCCGAA-TTACTCATACTAA--------T-A------CA-------TG-------------TATA------A-TCTATTGCTCTGAAAACAGCCACATTGAGACCAATATGGTC-GCTATGCACAGTAGCAAAATATACCCCTTTTCTCCAT
gi|9 : TTTCCGAA-TTACTCATACTTG--------T-AGATAATCAT--TTTTTGTCTTTTTTCC--TTATA-----TAATTTATTGCTCTGAAAACCGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACATCATTTCTCCATa
blockSeqs : A A A AACT T T T G G G CAG T . GCATATG T . TT A C CTCGATGT T C A A . C TAGGCCT TCGTTGT T . . T C T GA G . T T A . T T TT AAAAT . T G T . . GT . T . AATA A . AAAA G . TTT T T . A AGAT T . G A G C T CC G A TG ACGC T . G . . G C . TTT . CAAATGTA . A ATT T . T AATTATAA T G
blockSeqs : A . C CC T A C . T A AG . . CATTCTA A . TT G T TCCGAGT . C . A . C . CGTGAT . . . . A . A T . T . . . . . T AAAT . T . T . . . . T . ATA . . . T . TTT . . . A AAT T . T T . C T CC G G TT AC A . . . . G . . T . . . T A T . T TAA T .
blockSeqs : . . . C . . . . G A AA . . CTTTTA A . T T C . . . . G . . . CATGAA . . . . T . A T . T . . . . . T TAC . A . T . . . . . . ATA . . . A . TTT . . . A ACT G . G T . . . C . T . C A . . . . T . . T . . . A A T . T TA T .
blockSeqs : . . . . . CATTG T . . . T . . . . . . . . T . . . . G . G G . . . . . . . T AT . T . T . . . . . . TA . . . A . TA . . . T AA T . C T . . . . . . . . . . . . A A T . T A T .
blockSeqs : . . . . G . A G . . . . . . . C . . T . . . . . . . . AG . . . A . TA . . . A A T . G . . . T T . . T A T .
blockSeqs : . . . . . . . . . T . . . . . . . . . . AT . . . A . TA . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . TT . . . .
blockSeqs : . TA .
blockSeqCons : AG** ** CATTTG********** *********** *** CGTGT**** ***** A**** ** T* AAT*** **** *** ATA* TA* ** AAT** ** ** TAA*****
originalCons : TAATGTCACATTAAATATTGATACAA--CCGGGTCCAGATACTAAAT-ATTAAATGAAGA-AG-AAATT-CAC--TTGGCATNC-TG-------GTTATATTT-TTAAATTAATTTTCAAANTCGCTTTT---CGA-GTCATT-AGCGTTTTC--AG-GAGT-GCCTCCAT-------ACTT-CGTG-AT-AAAAGTTG-ATTTT-----GACCAATTTC-AAACTAAAAA-GGANCAAT-GAAG-A---TAAGTT--TTAGTTCGGGT-CGAG-AT-TT-C-TGAT-ATGAAA-A---TTGGCACTGG----ATACTAATCAT-TTAAATGAG-GAAGAACTTC-ACC--TGCAT---AT-GGC-AAA-TATT-TTT-AAA----TAATTTTCATATTCGC-TTCATTTA-GCGTTTTCAGGAG-GG--TTACAT-A-ATTTACAA-TGAACAGAGCTCCGCTTCGATTTTTCAAGAGC-AAAAGGAACCGCTATCCGGTCGCCGTTTGTAAAC-CAANCCAGACACATTCCAATCC-CGG-ATA--GAGTAAACTACA-AAACCAAATGAGGAAG-A-AC--TTTTTCCGAA-TTACTCATACTTA--------T-AGATAANCAA--TTTTTGTCTTTTTTCC--TTATA-----TA-TCTATTGCTCTGAAAACCGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACACCATTTCTCCAT
finalCons : TAATGTCACATTAAATATTGATACAA--CCGGGTCCAGATACTAAAT-ATTAAATGAAGAAG--AAATT-CAC--TTGCATTTG----------GTTATATTT-TTAAATTAATTTTCAAANTCGCTT-----------CATT-AGCGTTTT---AG-GAGT-GCCTCCAT-------ACTTCGTGT----AAAAGTTG-ATTTT-----GACCAATTTC-AAACTAAAAA-GGANCAAT-GAAGA----TAAGTT--TTAGTTCGGGT-CGAG-AT-TT-C-TGAT-ATGAAAAAT---TGGCACTGG----ATACTAATCAT-TTAAATGAG-GAAGAACTTC-ACC--TGCAT---AT-GGC-AAATA-TT-TTT-AAA----TAATTTTCATATTCGC-TTCATA-A-GCGTTTTCAGGAG-GG--TTACATAAT--TTACAA-TGAACAGAGCTCCGCTTCGATTTTTCAAGAGC-AAAAGGAACCGCTATCCGGTCGCCGTTTGTAAAC-CAANCCAGACACATTCCAATCC-CGG-ATA--GAGTAAACTACA-AAACCAAATGAGGAAG-A-AC--TTTTTCCGAA-TTACTCATACTTA--------T-AGATAANCAA--TTTTTGTCTTTTTTCC--TTATATAA-----TCTATTGCTCTGAAAACCGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACACCATTTCTCCAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GAGAATTCGTGTTACGCTTTATTCATGAGTTCATTACAGTACATTTTATCTCATAAATTATTCATATTAAAGATGACCCCTTTGTTAGTCGTTTGATTTTTCCATATTCTCAAAGTAAAAATGTAATCATATGAAGAAATTTTGCTATTTTCCTCCAATATTGAACCCAATCCATTGATATTCAAATAGAAAGGATAAAAGTGTCTTGAAAA
Alignments
lowQualScore : 1 1111 1 1111 111 4444444444444 11 777777777777777777777777777 11111 1 2222222 2222 11111 1111 11111 11 111 1111 11111 1 11 1111 11 11111 1 1 1111 111 11 22222222 111 11 111111111
lowQualScore : 3 5 0 9 6666 3 9 7 0 5 1 0000 8 0 444 8 3333333333333 1 8 0 11 8 1 111111111111111111111111111 8 1 66666 8 3 8 0 6666666 8 8 3333 6 6 66666 6 6 1 6 5 0000 55555 5 5 5 5 5 5 55 33 666 2222 1 5 9 5 0 5 66 66666 0 22 5 5 0000 3 2 4 55 0 5 66 1 55555 1 3 6 1 6 8 2 3 5 5 4 3 2 6666 1 0 0 444 11 8 0 5 8 8 0 99 6 44444444 5 3 666 1 0 33 666666666 1 3 1 4
lowQualScore : . . . . .... . . . . . . .... . . ... . ............. . . . .. . . ........................... . . ..... . . . . ....... . . .... . . ..... . . . . . .... ..... . . . . . . .. .. ... .... . . . . . . .. ..... . .. . . .... . . . .. . . .. . ..... . . . . . . . . . . . . . .... . . . ... .. . . . . . . .. . ........ . . ... . . .. ......... . . . .
lowQualScore : 2 5 8 2 5555 2 8 0 0 0 4 0000 0 8 000 0 2222222222222 4 0 8 66 8 4 000000000000000000000000000 0 4 00000 0 8 0 0 0000000 0 0 2222 7 7 77777 7 7 0 7 7 1111 11111 0 7 7 7 7 7 99 66 333 1111 7 0 4 0 2 0 99 00000 0 55 0 0 6666 2 2 4 00 8 0 99 7 66666 6 2 7 0 0 0 5 2 0 0 2 2 5 0000 0 8 8 222 00 0 8 0 0 0 8 22 7 22222222 7 0 666 3 7 66 000000000 4 0 4 4
consensus : TAATGTCACATTAAATATTGATACAA--CCGGGTCCAGATACTAAAT-ATTAAATGAAGA-AG-AAATT-CAC---TTG-CAT---T-TG------GTTATATTT-TTAAATTAATTTTCAAANTCGCT----------T-------C--------ATT-AGCGTTT---T-AG-GAGT-GCCTCCAT-------AC-TTCG-TGA-T-AAAA-GTTG-ATTTT-----GACCAATTTC-AAACTAAAAA-GGANCAA-TGAA-GA---TAAGTT--TTAGTTCGGG-TCGAG-A-T-TTC-TGA-TATG--AAAAATTGGCACTGG----ATACTAATCAT-TTAAATGAG-GAAGAACTTC-ACC--TGCAT---A-TGGC-AAATATT-TTT-AAA----TAATTTTCATATTCGC-TTCA--TAAGCGTTTTCAGGAG-GG--TTACAT-A-ATTTACAA-TGAACAGAGCTCCGCTTCGATTTTTCAAGAGC-AAAAGGAACCGCTATCCGGTCGCCGTTTGTAAAC-CAANCCAGACACATTCCAATCC-C-GGATA--GAGTAAACTACA-AAACCAAATGAGGAAG-A-ACTTTTT--CCGAA-TTACTCATACTTA--------T-AGATAANCAA--TTTTTGTCTTTTTTCC--TTA-TA-----TAATCTATTGCTCTGAAAACCGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACACCATTTCTCCAT
Reference ( family-3592 ) : TAATGTCACATTAAATATTGATACAA--CCGGGTCCAGATACTAAAT-ATTAAATGAAGA-AG-AAATT-CAC---TTG-CAT---T-TG------GTTATATTT-TTAAATTAATTTTCAAANTCGCT----------T-------C--------ATT-AGCGTTT---T-AG-GAGT-GCCTCCAT-------AC-TTCG-TG--T-AAAA-GTTG-ATTTT-----GACCAATTTC-AAACTAAAAA-GGANCAA-TGAA-GA---TAAGTT--TTAGTTCGGG-TCGAG-A-T-TTC-TGA-TATG--AAAAATTGGCACTGG----ATACTAATCAT-TTAAATGAG-GAAGAACTTC-ACC--TGCAT---A-TGGC-AAATATT-TTT-AAA----TAATTTTCATATTCGC-TTCA--TAAGCGTTTTCAGGAG-GG--TTACAT-A-ATTTACAA-TGAACAGAGCTCCGCTTCGATTTTTCAAGAGC-AAAAGGAACCGCTATCCGGTCGCCGTTTGTAAAC-CAANCCAGACACATTCCAATCC-C-GGATA--GAGTAAACTACA-AAACCAAATGAGGAAG-A-ACTTTTT--CCGAA-TTACTCATACTTA--------T-AGATAANCAA--TTTTTGTCTTTTTTCC--TTA-TA-----TAATCTATTGCTCTGAAAACCGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACACCATTTCTCCAT
gi|1 : TAATGTCACATTAAATATTGATACAA--CAAAGTCCAGATACTAAAT-ATTAAATGAAGA-AGAAAATT-CACCATTTG-CATACAT-GGGAGAGAGTTATATTTCTTAAATTCATAATCAAATCAGCTTTTCCACGAGT-------C--------ATG-TGCATTTTCAT-AG-GAGTGGTCTCCAT-------AC-TTCG-TGAATAAAAA-GTTG-AAATTCATAAGAACCATTTCAAAACTAAAAA-GAGACCA-TGAA-GAAATTAA-TTAATTAATTTGGG-TCGAG-A-TGTTC-TGA--ATG--AAAA--TGGCACTGGTATAATACTAATCAT-TTAAATGAGAGAAGAATTTCAACC--TGAGTAAAA-TGGCAAAATATT-TTTAAAA----TAATTTTCATATTCGCATTCAT-TTAGCGTCTTCAGAAG-GGTATTACATGA-ATTAACAATTAAACAGAGCTCCGCTTCGA-ATTTCAAGAGC-AAAAGGAACCGCTAT-CGGTC-CCATTTGTAAAT-CAACCCAG-CACATTTCAATCCAA-GGATACGAAGTAAACTAAACAAACCAAATGAGGAAG-ATACTTTTT--CCGAAGTTAC-CATAC-TA--------TCAGATAATCAA--TTTTTGTCTTTTTTCCATTTA--A-----TAAT-TA-TGCTCTTAAAAGCGCCATATTGA-ACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACACCATTTCTCCAT
gi|10 : TCAT-TTAAATGAG-GAAGAACTTC-ACC--TGCAT---C-TGGC-AAATATT-TTT-AAA----TAATTTTCGTATTCGC-TTCA--TAAGCGTTTTCAGAAG-AG--TTACAT-A-A-TTACAA-TGAACAGAGCTCa
gi|11 : -AGATAAACAA--TTTTTGTCTTTTTTCC--TTA-TAAATTATAATCTATTGCTCTGAAAACCGCCATATCGAGACCAATATGGC-----A--------AGCAAAGTGTATATGATTTCTCCAT
gi|12 : CAATATGGCC-GCTATGCAAATTAGCAAAATGTACATGATTTCTCCA
gi|13 : ATGGCC-GCTATGCAAATTAGCAAAGTGTACGCCATTTCTCCAT
gi|14 : TAATGTCACATTAAATATTGATACAA--CCGGGTCCTGA
gi|15 : tAA-GA---TAAGTT--T-AGTTCGGG-TCGAG-A-T-TTC-TTT-TATG--
gi|16 : TATTCGC-TTCA--TAAGCGTTTTCAGGAG-GG--T
gi|2 : TAATGTCACATTAA---TTGAT-TAA--C-GGG-CCAGATACTAAAT-ATTAAATGAAGA-AG-AAATTTCAC---TTGGCAT---A-TG------GTTATATTT-TTAAATTAATTTTCAAAATCGCT----------TTCCGAGTC--------ATT-AGCATTT---TCAA-GAGT-GC-TCCAT-------AC-TTCG-TGA-T-AAAA-GTTG-ATTTT-----GACCAATTTC-AAACTAAAA--GAACCAT-TGAA-GA---TAATTT--TTAGTTCGGA-TCGA--A-T-TTC-GGA-TATG--AAAA-TTGGCACTGG----ATACTAATCAT-TTAAATGAG-AAAGAATTTC-ACC--TGCAT---A-TAGC-AA-TATT-TTT-AAA----TAATTTTC-TATTCGC-TTCAT-TTAGCGTTTTCAGAAG-GG--TTACAT-A-ATTTACAA-TTAACAGAGCTCCGCTTCGAATTTTCAAAAGC-AAAAGGAAC--CTATCCGGTC-CCATTTGTAA---CAATCCAGACACATTCCAATCC-T-GGATA--GAGTAAACTACA-AAACC-AATGAGGAAG-A-ACTTTTT--CCGAA-TTACTCA-ACTTA--------T-AGATAATCAATTTTTTTATATTTTTTCC--TTA-TA-----T-ATCTATTGCTCTGAAAACCGCCATTTTGAGA-CAATATGGCC-GCTATGCAAATTAGC-AAGTGTACACCA-TTCTCCAT
gi|3 : TAATGCGAC-TTAA-TGTAGACCCAAAACTGGGTCC-GATAC-AAAT-ATTAAAT------------TT-CAC---TTG-CAT---T--G------GCTAAATAA-TTGAATTAAATTTCAAAGTTGCT----------T-------CTCGATGTCATTTAGATTTT---C-AGAGAGT-GCCTCTATTAGGCCTAC-TTCA-TG--A-AAAAAGTTGTATTTT-----GACCACTTTC-AAACTAAAAA-GGAACCATTGAC-GG---TAA--T--TTAGTTCGGGTTCGAG-A-T-GTC-TGA-TATG--AAATACTGGCACTGG----ATACTAATCATGTTAAA-GAG-GAAG-ACCTC-ACCGTTGCAT---ATTGGCAAAATATTATTT-AAA----T-ATTTTCTTATTCGC-TTCA--TAAGCGTTTTCAGGAG-GG----AC-T-AGATTGACAA-TGAACAGAGCTCCGCTTCGATTTTTCAAGAGCGAAAAGGAACCGC-AT-CGGTCGCCGT---TAAACGCAAACCAAACACAT--CAATCC-CGGGATA--GAGTAAACTACA-AATCCAAATGAGAAAGCA-AC-TTTT--CCGAA-TTACTCATACTTA--------T-AGATAAACA-----------TTTTTTCCT-TTACTA-----TAATCTATTGTCCTGAAAACCTCC-TA-TGAG-CCAATATGGCCGGCTATGCAAATTAGCAAAATGTACA
gi|4 : -GTTG-ATTTT-----CCCCATTTTC-AAAGTGAAAATGAATCAT-TGAA-G-----AATTG--TTAGTTTGAG-CCAAGAA-T-GTCTTGA-CACA--AAA---TAGCAC----------CAAATGAT-TAAATTGAA-AAAAAA-TGC-ACT--TGCTT---T-TACT-TAA-GTT-TTT-AAT----TAA--TTCA-AATCGC-TTCA--TTAGCGTTTT-AGGGGTGC--CTCCAT-A-CTTTtg
gi|4 : catattaaaagttcatctcccttttagtACCAAATGATTAAATTGAAA-AA-AAATG-CAC---TTG-CTT---T-TA------CTTAAGTTT-TTAA-TTAATT--CAAA-TCGCT----------T-------C--------ATT-AGCGTTT---T-AG-GGGT-GCCTCCAT-------ACTTTCGTTG--T-AAAA-GTTG-ATTTT-----GATCAA-TTC-AAACTATAAA-GGAGCAA-TGAAGGA---TAAG-T--TTAGTTTCGG-T--AG-ATT-TTC-TGATTATGAAAAAAATTGG-ACTGG----ATACTAATCAT-TTAAA-GAG-G-AGAACTTC-ACT--T-CAG---ATTGGC-AG--ATT-TTG-AAA----TAA-TTTCATATTCGC-TTCATTTATGCGTTTTCAGGAG-GA--TTACTT-A---TTAC-A-TCAAGGGAGCTCCGCTTCGATTTTTCAAGAGC-CAAcgttgtaaaagttgattttgatcaattcaaactataaaggagcaatgaaggataagtttagtttcggtagattttctgattatgaaaaaaattggactggatactaatcatttaaagaggagaacttcacttcagattggcagattttgaaataatttcatattcgcttcatttatgcgttttcaggaggattacttattacatcaagggagctccgcttcgatttttcaagagccaataagatcctc
gi|5 : catattaaaagttcatctcccttttagtgttgattttccccattttcaaagtgaaaatgaatcattgaagaattgttagtttgagccaagaatgtcttgacacaaaatagcGTACTGG----ATAC-AATCAT-TTAAATGAG-GAAGAACTTC-ACC--TGCAT---A-TGGC-AA---TT-TTT-AAAAAAATAATTTTCATATTCGC-TTCA--TAAGCGTTTTCAGGAT-GG--TTACA-----------A-TGAACAGAGCTCCGCTTCGATTTTTCAAGAGC-AAAAGCAACCGCTATCCGGTCGCCTTTTTTAAAC--AAACCAAACACATTCCAATCC-C-TGATA--GAGTAAACTACA-AAACCAAATGA---AG-A-ACTTTTT--TCGAA-TTACTCATACTTACAAATGTAT-AGATAAACAA--TTGTTGTCTTTTTTCC--TT------------------GCTCTGAAAACTGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACATCATTTCTCCtaagatcctc
gi|6 : AAATGAAAACAG-AAAAT-C-C---TTG-CAT---TCTA------CTTATATTT-TTTAATTAATTT-CAAATCTGGT----------T-------C--------ATT-AGCGTTT---T-AG-G-GT-GC-TCCAT-------AC-TT-------T-AAAA-GTTG-ATTTT-----GATCAATTTC-AAACTATAAA-GGAGCAA-TGAA-GA---TAAGTT--T-AGTTCGGG-TTGAG-A-T-TTC-TGA-TATGA-AAAAATTGGCACTGG----ATACTAATCAT-TTAAA-GAG-GAAGAACTTC-ACC--TTCAG---A-TGGC-AAATATT-TTG-AAA----TAATTTTCATATTCGC-TTCA--T
gi|8 : AGACACATTCCAATTC-C-GGATA--GAGTAAACCACC-AAACCAAATGATGAAG-A-GCTTTTTTTCCGAA-TTACTCATACTAA--------T-A------CA----------------------TG-TA-----TAATCTATTGCTCTGAAAACAGCCACATTGAGACCAATATGGTC-GCTATGCACAGTAGCAAAATATACCCCTTTTCTCCATtt
gi|9 : TTT--CCGAA-TTACTCATACTTG--------T-AGATAATCAT--TTTTTGTCTTTTTTCC--TTA-TA-----TAATTTATTGCTCTGAAAACCGCCATATTGAGACCAATATGGCC-GCTATGCAAATTAGCAAAGTGTACATCATTTCTCCATa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): GAGAATTCGTGTTACGCTTTATTCATGAGTTCATTACAGTACATTTTATCTCATAAATTATTCATATTAAAGATGACCCCTTTGTTAGTCGTTTGATTTTTCCATATTCTCAAAGTAAAAATGTAATCATATGAAGAAATTTTGCTATTTTCCTCCAATATTGAACCCAATCCATTGATATTCAAATAGAAAGGATAAAAGTGTCTTGAAAA