lowQualScore : 11111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1111 1 44444444444444444444444444444444444444 444444444444444444444 22 1 88888888888888888888888888888888888888888 00000000000 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 4 33 1
lowQualScore : 3 0000 6 5 88 7777 6 33333333333333333333333333333333333333 44 0 000000000000000000000 2 888 2 11 7 2 1 7 44444444444444444444444444444444444444444 5 99 2 55555555555 77 3 2 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 6 6 6 7 6 6 0 6 6 44 7 6 6
lowQualScore : . .... . . .. .... . ...................................... .. . ..................... . ... . .. . . . . ......................................... . .. . ........... .. . . ....................................................................................................... . . . . . . . . . .. . . .
lowQualScore : 9 3333 2 2 88 1111 5 33333333333333333333333333333333333333 88 4 888888888888888888888 2 888 6 44 3 7 4 6 88888888888888888888888888888888888888888 0 22 5 22222222222 99 0 8 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0 0 0 0 0 0 00 0 0 0
consensus : AAAGAGCTAGGTACGNTATGCAGCAAAATCGGCC----CTGTCTTCAAATTTCA-----TCA---------AA----ATACG----T----AAAGTGCCCACAA------CN-TGCCA---T---TGTC---AGAACACGTTANNTTTTCCTTATA-TCTCGTGTAGTTTTTTTT-G-TAAGAG------TAAG-TAAAT----AT-AGCGTTGTTTC--TTACAAAAACCA---A-C--GCAAGT--AACGTCATGACGTCGACGTTTATTG-A-A-GTA-CGCC-TGGAA--A--TCGC---AAGC-AAG-AAGCTA-ACTTGAAATTGCTTCTTTAGCACACGGATTTAAAAGCTTGATATACCGGTACCTTCTACTTTTTCAATAAGATGGGTCAGGATATATCAAATCCTAAATGGA
Reference ( gi|3 ) : AAAGAGCTGGGTATGGTAAGCATCAAAATCGGCC----CTGTCTTCCAATTTCT-----TCA---------AA----ATATA----T----AAAGTGTCCACAA------CT-TACCA---A---TGTC---AGAACACATTACTTTTTTCTTGTA-TCTCATATAGTGTCCTTT---TAAAAG------TAAGGTGAAT----AT-AGCATTGTTTC--TTACAAAAACCAGCAAACCTGCAAGT--AACATCATGATGTCGACGTTTATTG-ACACATACCGCTTTAGAA--AAGTTAC---AAGC-AAG-AAGCTA-ACGTGAAAATGCCTTTTTGGTTCATGGATTC-A-----TG------------TTTCTGCTCTTTTATTGAAAT-GGTTAGGGTAATTCTAATTCTGAATGGA
gi|2 : AAAGAGCCAGGTATAATATGAAGGAAAATCGGCC---------TTCAAAATTCA-----TGA---------AATCAAATGGA----C----AAAGTATCCACAA------AA-TGTCA---T---TGTC---AATACACATTATTTTTTCCATATA-TCCCATGTATTTTTTTTTTGGTGAGAT------TTAGTTAAAT----GT-AGCGTTATTTC--TGACAAAAAACA---------CAAAT--AACGTCATGAAATCGACGTTTAT---ATA---AACGTCATGGAA------TGC---AAG----A-AAACTACACTTGAAATTGCTTTTTTAGCACACGGATTT-AAAGCTTGATATACCGGTACCTTTTACTTTTTCAATAAGATGGGTCAGGATATATCAAATCCTAAATGGA
gi|7 : acagttttcagtcttttacatggatttagcatcccAAAGAGCTGGGTACAGTAAGCATCAAAATCGCCC----CTGACTTC---------------------------------ATG----T----AAGGAGTCAACAA------CC-TACAA---C---TGTA---AAAACACGTTAAATTTGCCTTGTA-TCTCATTTAGTTTTCTTT---TAAGAA------TAAGTTAAAA----AT-TGCATTGGTTC--TTA-AAAAAC----------GCAAGTTCAATATTAAGATGa
gi|5 : acaatttgtcaattaataaataatacccttcAAAGAGCTAGGCATGTTATGCAACAAAATTTACCCTAGCTGTCTTCAAATTTCA-----TTAATTAAAATTAA----ATACG----C----AAAATGCCAATAA------TG-TCCCATTCAATTTGTC---AGAACCCATTAATTGTTCCTTATA-TGTC-T----TTTTCTTA---TAAGAG------T----TATAC----AT-AGCATT-TTTC--TTACAAAAA
gi|4 : ggatttcagAAAGAGCTAAATACAACGAACATGAAAATTGGCC----CCGTCTTCAAATTTCA-----TCA---------AA----TTAAATTCCT----AAAGTGCCCATAA------TG-TGCTC---T---TATC---AGAATGCGTTagacacacaccccccccatcccccccccaaaaaaaggcagataatgtcatgacgcggacttttaagaacaaagtcaaggaaagcaagaaagctactcaaattgcttctttagcacagagatttaatgcttcatata
gi|1 : ttttgattaatttgaaacattctcttatcaggtgaaattctctatccttcgacgttagcctaaaatttggatcacaaaaataatcaatgttatatcaatgatgtaaataccatcgtagcaagtatttgagcggatctaacatctgttaacgtattttgaaatcgcttgatatatctatcgacactaacgaatcgtgaaaacaccgcaagttatacagccacAAAGAGCTAGGTACGTTATCCAGCAAAAGGGGCC----CTGTCTTCAAATTTTA-----TCA---------AA----TTACA----T----Act
gi|9 : AAGAGCTAGGTTCGTTATCCAGCAAAA---GCC----CTGTCTTCAAATTTTA-----TCA---------AATTACATACA----T----AAA---CCCATAA------CTATGTGA---T---CATC---AGAACACCTTAGATTTTCCTTACATTCTCTTGTCGT---TTTTAG-TAAAAGTTAGTTTAAAGTGAGTTGAAAC-AACATTGcattagacacccataatatgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatagcgttgtttcttacaaaaaccgcacatgacgtcatgacgtcaaagtttgtgaacatatcacatcggatagcatacgaactactttcaatttgtttttattagctcaatgatttcatgctttgttaaaataccttgtaccatctcaataaaatggatcaggatattttcatatcaatcttgactttattgcacttaaagaatcacattacctttcacatctattcttcc
gi|8 : AAGAGCTAGGTTCGTTATCCAGCAAAA---GCC----CTGTCTTCAAATTTTA-----TCA---------AATTACATACA----T----AAA---CCCATAA------CTATGTGA---T---CATC---AGAACACCTTAGATTTTCCTTACATTCTCTTGTCGT---TTTTAG-TAAAAGTTAGTTTAAAGTGAGTTGAAAC-AACATTG
gi|17 : AAGAGCTGGGTACAGTAAGCATCAAAATCGCCC----CTGACT
gi|16 : AAGAGCTAGGTTCGTTTTCCAGCAAAAGGGGCC----CTGTCTTCAAATTT
gi|6 : AAAGCTCAATACAACGAGCATAAAAATTGGCC----CCGTCTTCAAATTTCA-----TCA---------AA----TTAAA----TGCCTAAAGTGTCCACAATGTGCTCT-TACCA---
gi|14 : tttgattaatttgaaacattctcttatcagatgaaattctctaactttcgacgttagcctaaagttcggatcacaaaaataatcaatgctatatcaatgatgtaaatgccagtgtagcaagtattggagtggatctaagataaacgtattttgaaatcgcttggtatatctgtcgacactaacgaatcgtgaaaacaccgcaattcataaagccacAGCTAAGTCCATTATGTAGCAAAACCGGGC----CTGTCTT-TAATTTCA-----TCA---------AA----Agaataagttctgtc
gi|10 : AAGCATCAAAATGGACC----CTAT-TTCAAATATCCATCAACCA---------AA----GTATG----T----AAGGTGCCCACAA------CC-TATTC---A---T-TCTAAAGACCACA--A------------A-TCTCATAT-GTTTTTTCT---T-------------------AT----ATAAGCGTTGTTTCCTTTAAAAAAA--AAAAGAC--ACAAGT--AAAATCAaacgtcagatgatacatgtacaatatg
gi|12 : CA---C---TGTC---AGAACACGTTACCTTTTCATTGTA-TCTTGTATAGCTT--TTT---TAAAAA------T----TAAAT----AT-AGCATTGTTTC--TAACAACAACAA--AAATCCGCAAGC--AACGTCATGACGTCGA
gi|1 : AAT----AT-AGCGTTGTTTC--TTACAAAAACC---------GCACAT--GACGTCATGACGTCAAAGTTTG-TG-A-ACATATCAC
gi|13 : aaagagctaggtacgttatccagcaaaaggggccctgtcttcaaattttatcaaattacatacattagacacccataatatgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaAAAAACC--CTA-CCCGCAAAT--AACCTCAGGATATCGACGTTTATTGAAAAGGTA----TTTGGAA--A--TGAC---AAGCTAAG-AA--TA-ACTTGTAAAGGCCatcggatagcatacgaactactttcaatttgtttttattagctcaatgatttcatgctttgttaaaataccttgtaccatctcaataaaatggatcaggatattttcatatcaatcttgactttattgcacttaaagaatcacattacctttcacatctattcttcc
gi|5 : tGCAGAT--AATGTCATGACGCGGACTTTTA------------------AGAACAAAGTCAAGGAAAGC-AAGAAAGCT--AC-TCAAATTGCTTCTTTAGCACAGAGATTTAA-----TG------------CTTC
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): ATTTATTTTTTTTGGGGCCAGGCAATCATGCTGTGTGAAATACCGTTGTACCTCTCAATAAAATGATCAGGTAGTTTCTATTCATACTTCAACCTTTTGCACTTAAAGAATAGCCTTACCATTAAATCAAGTTTTTC
Unaligned ( gi|15 ): AAGAGCTAGCTTCGTTTATCCAGCAAAAGGGCGCCCTGTCCCTTTCCTATTTTG
Alignments
lowQualScore : 5555555555555555555 111111 1 1111111 2222 22222 55555555555555555 99999999999999999999999999999999 111 11 11 11 1 555555555555555555
lowQualScore : 0 44 11 1 88 2 6666 3 5555555555555555555 1 3 99 4 0 111111 4 4 22 0 0 3333333 1111 1 0 55555 4 77 33333333333333333 33333333333333333333333333333333 8 111 44 33 33 2 0 4 66 888888888888888888 3 4 0 6 4 4
lowQualScore : . .. .. . .. . .... . ................... . . .. . . ...... . . .. . . ....... .... . . ..... . .. ................. ................................ . ... .. .. .. . . . .. .................. . . . . . .
lowQualScore : 8 11 11 9 44 9 1111 3 0000000000000000000 8 5 00 0 7 555555 0 8 00 1 0 4444444 2222 1 2 44444 4 99 44444444444444444 88888888888888888888888888888888 0 888 44 66 00 0 0 0 88 777777777777777777 7 7 7 7 0 0
consensus : AAAGAGCTAGGTACG-NTATGCAGCAAAATCG-GCC----CTGTCTTCAAAT-TTCATCA---------A----A----ATACGTAAAGTGCCCACAAC-GTG-CCA------TTGT-CAGAACACGTTANNTTTTCCTTATA-TCTCGTGTAGTTTTTTTT--GTAAGAGT-A-G-T-AAATATAGCGTTGTTTC--TTACAAAAAC-A--A----C------GCAAGTAACGTCATGACGTCGACGTTTATTGAA---GCACATC----TGGAAA--TC---GCA-AGC-A-AGAA-GCTA-ACTTG-AAATTGCTTTT-TTAGCNCANGGATTTAAA-GCTTGATATA---GTACCTTNTACTNTTTCAATAAAATGGGTCAGGATATNTCNAATCCTGAATGGA
Reference ( family-359 ) : AAAGAGCTAGGTACG-NTATGCAGCAAAATCG-GCC----CTGTCTTCAAAT-TTCATCA---------A----A----ATACGTAAAGTGCCCACAAC-NTG-CCA------TTGT-CAGAACACGTTANNTTTTCCTTATA-TCTCGTGTAGTTTTTTTT--GTAAGAGTAA-G-T-AAATATAGCGTTGTTTC--TTACAAAAACCA--A----C------GCAAGTAACGTCATGACGTCGACGTTTATTGAA---GTACGCC----TGGAAA--TC---GCA-AGC-A-AGAA-GCTA-ACTTG-AAATTGCTTCT-TTAGCACACGGATTTAAAAGCTTGATATACCGGTACCTTCTACTTTTTCAATAAGATGGGTCAGGATATATCAAATCCTAAATGGA
gi|1 : AAAGAGCTAGGTACG-TTATCCAGCAAAAGGG-GCC----CTGTCTTCAAAT-TTTATCA---------A----ATTACATACATTAGACACCCATAAT-ATG-C
gi|1 : -AAATATAGCGTTGTTTC--TTACAAAAAC---------C------GCACATGACGTCATGACGTCAAAGTTTG-TGAA----CATATC-------ACA--TC---GGATAGC-ATACGA-ACTA-CTTTC-AATTTGTTTTTATTAGCTCAATGATTTCATGCTTTGTTAAA---ATACCTTGTACCATCTCAATAAAATGGATCAGGATATtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatagcgttgtttcttacaaaaaccgcacatgacgtcatgacgtcaaagtttgtgaacatatcacatcggatagcatacgaactactttcaatttgtttttattagctcaatgatttcatgctttgttaaaataccttgtaccatctcaataaaatggatcaggatattttcatatcaatcttgactttattgcacttaaagaatcacattacctttcacatctattcttcc
gi|10 : aaagagctaggtacgttatccagcaaaaggggccctgtcttcaaattttatcaaattacatacattagacacccataatatgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGCATCAAAATGG-ACC----CTAT-TTCAAATATCCATCA---------ACCAAA----GTATGTAAGGTGCCCACAAC-CTATTCA------TTCTAAAGACCAC---AAAT----CTCATA-T--------GTTTTTTCT---------------T-ATATA-AGCGTTGTTTCCTTTAAAAAAAAAAAGA----C------ACAAGTAAAATCAtttcatatcaatcttgactttattgcacttaaagaatcacattacctttcacatctattcttcc
gi|12 : aaCA------CTGT-CAGAACACGTTACCTTTTCATTGTA-TCTTGTATAGCTTTTT-----TAAAAAT-----T-AAATATAGCATTGTTTC--TAACAACAACAA--AAATCC------GCAAGCAACGTCATGACGTCGA
gi|13 : AAAAACCCT-A----CCC----GCAAATAACCTCAGGATATCGACGTTTATTGAAAAGGTA--TT----TGGAAA--TG---ACA-AGCTA-AGAA---TA-ACTTGTAAA
gi|14 : tAGCTAAGTCCA-TTATGTAGCAAAACCG-GGC----CTGTCTTT-AAT-TTCATCA---------A----A----AAACGTCAGATGggcc
gi|15 : AAGAGCTAGCTTCGTTTATCCAGCAAAAGGGCGCC----CTGTCatacatgtacaatatg
gi|16 : AAGAGCTAGGTTCG-TTTTCCAGCAAAAGGG-GCC----CTGTCTTCAAAT-TTcctttcctattttg
gi|17 : AAGAGCTGGGTACA-GTAAGCATCAAAATCG-CCC----CTGACT
gi|2 : AAAGAGCCAGGTATA-ATATGAAGGAAAATCG-GCC---------TTCAAAA-TTCATGA---------A----ATCAAATGGACAAAGTATCCACAAA-ATG-TCA------TTGT-CAATACACATTATTTTTTCCATATA-TCCCATGTATTTTTTTTTTGGTGAGATTTA-G-TTAAATGTAGCGTTATTTC--TGACAAAAA-----A----C------ACAAATAACGTCATGAAATCGACGTTTATATAA-----ACGTCA---TGGAA----T---GCA-AG-----AAA-ACTACACTTG-AAATTGCTTTT-TTAGCACACGGATTTAAA-GCTTGATATACCGGTACCTTTTACTTTTTCAATAAGATGGGTCAGGATATATCAAATCCTAAATGGA
gi|3 : acagttttcagtcttttacatggatttagcatcccAAAGAGCTGGGTATG-GTAAGCATCAAAATCG-GCC----CTGTCTTCCAAT-TTCTTCA---------A----A----ATATATAAAGTGTCCACAAC-TTA-CCA------ATGT-CAGAACACATTACTTTTTTCTTGTA-TCTCATATAGTGTCCTTT---TAAAAGTAAGG-T-GAATATAGCATTGTTTC--TTACAAAAACCA--G----CAAACCTGCAAGTAACATCATGATGTCGACGTTTATTGAC---ACATACCGCTTTAGAAAAGTT---ACA-AGC-A-AGAA-GCTA-ACGTG-AAAATGCCTTT-TTGGTTCATGGATTCA------TG------------TTTCTGCTCTTTTATTGAAAT-GGTTAGGGTAATTCTAATTCTGAATGGAa
gi|4 : AAAGAGCTAAATACA-ACGAACATGAAAATTG-GCC----CCGTCTTCAAAT-TTCATCAAATT-----A----A----ATTCCTAAAGTGCCCATAAT-GTG-CTC------TTAT-CAGAATGCGTT
gi|5 : ttttgattaatttgaaacattctcttatcaggtgaaattctctatccttcgacgttagcctaaaatttggatcacaaaaataatcaatgttatatcaatgatgtaaataccatcgtagcaagtatttgagcggatctaacatctgttaacgtattttgaaatcgcttgatatatctatcgacactaacgaatcgtgaaaacaccgcaagttatacagccacAAAGAGCTAGGCATG-TTATGCAACAAAATTT-ACCCTAGCTGTCTTCAAAT-TTCATTAATTAAAATTA----A----ATACGCAAAATGCCAATAAT-GTC-CCATTCAATTTGT-CAGAACCCATTAATTGTTCCTTATA-TGTC------TTTTTCTT--ATAAGAGT-----T-ATACATAGCATT-TTTC--TTACAAAAAct
gi|5 : ggatttcagCAAAAA--A--A----G------GCAGATAATGTCATGACGCGGACTTTTA----A---GAACA---------AAG--TCAAGGAA-AGC-A-AGAAAGCTA--CTC--AAATTGCTTCT-TTAGCACAGAGATTT-AATGCTTCATATAagacacacaccccccccatcccccccccaaaaaaaggcagataatgtcatgacgcggacttttaagaacaaagtcaaggaaagcaagaaagctactcaaattgcttctttagcacagagatttaatgcttcatata
gi|6 : ggatttcagaaagagctaggcatgttatgcaacaaaatttaccctagctgtcttcaaatttcattaattaaaattaaatacgcaaaatgccaataatgtcccattcaatttgtcagaacccattaattgttccttatatgtctttttcttataagagttatacatagcatttttcttacaaaaaagacacacaccccccccatccccccccAAAGCTCAATACA-ACGAGCATAAAAATTG-GCC----CCGTCTTCAAAT-TTCATCAAATT-----A----A----ATGCCTAAAGTGTCCACAAT-GTG-CTC------TTAC-CAGAATAAGTT
gi|7 : tttgattaatttgaaacattctcttatcagatgaaattctctaactttcgacgttagcctaaagttcggatcacaaaaataatcaatgctatatcaatgatgtaaatgccagtgtagcaagtattggagtggatctaagataaacgtattttgaaatcgcttggtatatctgtcgacactaacgaatcgtgaaaacaccgcaattcataaagccacAAAGAGCTGGGTACA-GTAAGCATCAAAATCG-CCC----CTG-------AC-TTCAT-------------------------GTAAGGAGTCAACAAC-CTA-CAA------CTGT-AAAAACACGTTAAATTTGCCTTGTA-TCTCATTTAGTTTTCTTT---TAAGAATAA-GTT-AAAAATTGCATTGGTTC--TTA-AAA----A--A----C------GCAAGTctgtc
gi|8 : acaatttgtcaattaataaataatacccttcAAGAGCTAGGTTCG-TTATCCAGCAAAA----GCC----CTGTCTTCAAAT-TTTATCA---------A----ATTACATACATAAA---CCCATAACTATG-TGA------TCAT-CAGAACACCTTAGATTTTCCTTACATTCTCTTGTCG--TTTTTA--GTAAAAGTTA-G-T-tcaatattaagatg
gi|9 : AAGAGCTAGGTTCG-TTATCCAGCAAAA----GCC----CTGTCTTCAAAT-TTTATCA---------A----ATTACATACATAAA---CCCATAACTATG-TGA------TCAT-CAGAACACCTTAGATTTTCCTTACATTCTCTTGTCG--TTTTTA--GTAAAAGTTA-G-T-ttaaagtgagttgaaacaacattg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): ATTTATTTTTTTTGGGGCCAGGCAATCATGCTGTGTGAAATACCGTTGTACCTCTCAATAAAATGATCAGGTAGTTTCTATTCATACTTCAACCTTTTGCACTTAAAGAATAGCCTTACCATTAAATCAAGTTTTTC
Alignments
lowQualScore : 5555555555555555555 11 111111 1 1111111 3333333333333333333 4444444444444444 7777777777777777777777777777777 111 11 11 11 1 11 33333333333 33333
lowQualScore : 0 1 3 11 1 88 2 6666 3 5555555555555555555 1 3 11 4 0 111111 4 4 22 0 0 3333333 0000000000000000000 4 77 0000000000000000 66 3333333333333333333333333333333 8 111 44 33 33 0 1 11 33 11111111111 1 1 6 1 33333 1
lowQualScore : . . . .. . .. . .... . ................... . . .. . . ...... . . .. . . ....... ................... . .. ................ .. ............................... . ... .. .. .. . . .. .. ........... . . . . ..... .
lowQualScore : 8 0 1 11 9 44 9 1111 3 0000000000000000000 8 5 99 0 7 555555 0 8 00 1 0 4444444 9999999999999999999 4 99 2222222222222222 11 6666666666666666666666666666666 0 888 44 66 00 0 0 22 22 77777777777 0 0 7 0 33333 0
consensus : AAAGAGCTAGGTACGNT-ATGCAGCAAAATCG-GCC----CTGTCTTCAAAT-TTCATCA---------A----A----ATACGTAAAGTGCCCACAAC-GTG-CCA------TTGT-CAGAACACGTTANNTTTTCCTTATA-TCTCGTGTAGTTTTTTTT--GTAAGAG-T-A--G--T-AAATATAGCGTTGTTTC--TTACAAAAAC-----A---A-----C--GCAAGTAACGTCATGACGTCGACGTTTATTG--AAGCATATC----TGGAAA--TC---GCA-AGC-A-AGAA-GCTA-ACTTG-AAATTGCTTTT-TTAGCNCANGGATTTAATGCTT-GATATA---GTACCTTNTACTNTTTCAATAAAATGGGTCAGGATATTT-----CNAATCCTGAATGGA
Reference ( family-359 ) : AAAGAGCTAGGTACGNT-ATGCAGCAAAATCG-GCC----CTGTCTTCAAAT-TTCATCA---------A----A----ATACGTAAAGTGCCCACAAC-GTG-CCA------TTGT-CAGAACACGTTANNTTTTCCTTATA-TCTCGTGTAGTTTTTTTT--GTAAGAG-T-A--G--T-AAATATAGCGTTGTTTC--TTACAAAAAC-----A---A-----C--GCAAGTAACGTCATGACGTCGACGTTTATTG--AAGCACATC----TGGAAA--TC---GCA-AGC-A-AGAA-GCTA-ACTTG-AAATTGCTTTT-TTAGCNCANGGATTTAAAGCTT-GATATA---GTACCTTNTACTNTTTCAATAAAATGGGTCAGGATATNT-----CNAATCCTGAATGGA
gi|1 : AAAGAGCTAGGTACGTT-ATCCAGCAAAAGGG-GCC----CTGTCTTCAAAT-TTTATCA---------A----ATTACATACATTAGACACCCATAAT-ATG-C
gi|1 : -AAATATAGCGTTGTTTC--TTACAAAAAC---------------C--GCACATGACGTCATGACGTCAAAGTTTGT-G--AA-CATATC-------ACA--TC---GGATAGC-ATACGA-ACTA-CTTTC-AATTTGTTTTTATTAGCTCAATGATTTCATGCTTTGTTAAA---ATACCTTGTACCATCTCAATAAAATGGATCAGGATATTTTCATATCAATCTTGAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatagcgttgtttcttacaaaaaccgcacatgacgtcatgacgtcaaagtttgtgaacatatcacatcggatagcatacgaactactttcaatttgtttttattagctcaatgatttcatgctttgttaaaataccttgtaccatctcaataaaatggatcaggatattttcatatcaatcttgactttattgcacttaaagaatcacattacctttcacatctattcttcc
gi|10 : aaagagctaggtacgttatccagcaaaaggggccctgtcttcaaattttatcaaattacatacattagacacccataatatgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGCATCAAAATGG-ACC----CTAT-TTCAAATATCCATCA---------ACCAAA----GTATGTAAGGTGCCCACAAC-CTATTCA------TTCTAAAGACCAC---AAAT----CTCATA-T--------GTTTTTTCT------------------T-ATATA-AGCGTTGTTTCCTTTAAAAAAAA-----AAAGA-----C--ACAAGTAAAATCActttattgcacttaaagaatcacattacctttcacatctattcttcc
gi|12 : aaCA------CTGT-CAGAACACGTTACCTTTTCATTGTA-TCTTGTATAGCTTTTT-----TAAAAA-T-------T-AAATATAGCATTGTTTC--TAACAACAAC-----A---AAAATCC--GCAAGCAACGTCATGACGTCGA
gi|13 : -----C--GCAAATAACCTCAGGATATCGACGTTTATTGAAAAG-GTATT----TGGAAA--TG---ACA-AGCTA-AGAA---TA-ACTTGTAAA
gi|14 : taaaaaccctaccAGCTAAGTCCATT-ATGTAGCAAAACCG-GGC----CTGTCTTT-AAT-TTCATCA---------A----A----AAACGTCAGATGggcc
gi|15 : AAGAGCTAGCTTCGTTTATCCAGCAAAAGGGCGCC----CTGTCatacatgtacaatatg
gi|16 : AAGAGCTAGGTTCGTT-TTCCAGCAAAAGGG-GCC----CTGTCTTCAAAT-TTcctttcctattttg
gi|17 : AAGAGCTGGGTACAGT-AAGCATCAAAATCG-CCC----CTGACT
gi|2 : AAAGAGCCAGGTATAAT-ATGAAGGAAAATCG-GCC---------TTCAAAA-TTCATGA---------A----ATCAAATGGACAAAGTATCCACAAA-ATG-TCA------TTGT-CAATACACATTATTTTTTCCATATA-TCCCATGTATTTTTTTTTTGGTGAGAT-TTA--G--TTAAATGTAGCGTTATTTC--TGACAAAAA----------A-----C--ACAAATAACGTCATGAAATCGACGTTTATAT--AA--ACGTCA---TGGAA----T---GCA-AG-----AAA-ACTACACTTG-AAATTGCTTTT-TTAGCACACGGATTTAAAGCTT-GATATACCGGTACCTTTTACTTTTTCAATAAGATGGGTCAGGATATAT-----CAAATCCTAAATGGA
gi|3 : acagttttcagtcttttacatggatttagcatcccAAAGAGCTGGGTATGGT-AAGCATCAAAATCG-GCC----CTGTCTTCCAAT-TTCTTCA---------A----A----ATATATAAAGTGTCCACAAC-TTA-CCA------ATGT-CAGAACACATTACTTTTTTCTTGTA-TCTCATATAGTGTCCTTT---TAAAAG-T-AAGG--T-GAATATAGCATTGTTTC--TTACAAAAACCAGCAA---A-----CCTGCAAGTAACATCATGATGTCGACGTTTATTG--ACACATACCGCTTTAGAAAAGTT---ACA-AGC-A-AGAA-GCTA-ACGTG-AAAATGCCTTT-TTGGTTCATGGATTCA-----T-G------------TTTCTGCTCTTTTATTGAAAT-GGTTAGGGTAATT-----CTAATTCTGAATGGAa
gi|4 : AAAGAGCTAAATACAAC-GAACATGAAAATTG-GCC----CCGTCTTCAAAT-TTCATCAAATT-----A----A----ATTCCTAAAGTGCCCATAAT-GTG-CTC------TTAT-CAGAATGCGTT
gi|5 : ttttgattaatttgaaacattctcttatcaggtgaaattctctatccttcgacgttagcctaaaatttggatcacaaaaataatcaatgttatatcaatgatgtaaataccatcgtagcaagtatttgagcggatctaacatctgttaacgtattttgaaatcgcttgatatatctatcgacactaacgaatcgtgaaaacaccgcaagttatacagccacAAAGAGCTAGGCATGTT-ATGCAACAAAATTT-ACCCTAGCTGTCTTCAAAT-TTCATTAATTAAAATTA----A----ATACGCAAAATGCCAATAAT-GTC-CCATTCAATTTGT-CAGAACCCATTAATTGTTCCTTATA-TGTC------TTTTTCTT--ATAAGAG-T-------T-ATACATAGCATT-TTTC--TTACAAAAAA-----G---A-----C--ACAct
gi|5 : ggatttcagCAAAAA------A---A-----G--GCAGATAATGTCATGACGCGGACTTTTA------AGAACA---------AAG--TCAAGGAA-AGC-A-AGAAAGCTA--CTC--AAATTGCTTCT-TTAGCACAGAGATTTAATGCTT-CATATA---caccccccccatcccccccccaaaaaaaggcagataatgtcatgacgcggacttttaagaacaaagtcaaggaaagcaagaaagctactcaaattgcttctttagcacagagatttaatgcttcatata
gi|6 : ggatttcagaaagagctaggcatgttatgcaacaaaatttaccctagctgtcttcaaatttcattaattaaaattaaatacgcaaaatgccaataatgtcccattcaatttgtcagaacccattaattgttccttatatgtctttttcttataagagttatacatagcatttttcttacaaaaaagacacacaccccccccatccccccccAAAGCTCAATACAAC-GAGCATAAAAATTG-GCC----CCGTCTTCAAAT-TTCATCAAATT-----A----A----ATGCCTAAAGTGTCCACAAT-GTG-CTC------TTAC-CAGAATAAGTT
gi|7 : tttgattaatttgaaacattctcttatcagatgaaattctctaactttcgacgttagcctaaagttcggatcacaaaaataatcaatgctatatcaatgatgtaaatgccagtgtagcaagtattggagtggatctaagataaacgtattttgaaatcgcttggtatatctgtcgacactaacgaatcgtgaaaacaccgcaattcataaagccacAAAGAGCTGGGTACAGT-AAGCATCAAAATCG-CCC----CTG-------AC-TTCAT-------------------------GTAAGGAGTCAACAAC-CTA-CAA------CTGT-AAAAACACGTTAAATTTGCCTTGTA-TCTCATTTAGTTTTCTTT---TAAGAA-T-A--AGTT-AAAAATTGCATTGGTTC--TTA-AAA--------A---A-----C--GCAAGTctgtc
gi|8 : acaatttgtcaattaataaataatacccttcAAGAGCTAGGTTCGTT-ATCCAGCAAAA----GCC----CTGTCTTCAAAT-TTTATCA---------A----ATTACATACATAAA---CCCATAACTATG-TGA------TCAT-CAGAACACCTTAGATTTTCCTTACATTCTCTTGTCG--TTTTTA--GTAAAAGTT-A--G--T-tcaatattaagatg
gi|9 : AAGAGCTAGGTTCGTT-ATCCAGCAAAA----GCC----CTGTCTTCAAAT-TTTATCA---------A----ATTACATACATAAA---CCCATAACTATG-TGA------TCAT-CAGAACACCTTAGATTTTCCTTACATTCTCTTGTCG--TTTTTA--GTAAAAGTT-A--G--T-ttaaagtgagttgaaacaacattg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): ATTTATTTTTTTTGGGGCCAGGCAATCATGCTGTGTGAAATACCGTTGTACCTCTCAATAAAATGATCAGGTAGTTTCTATTCATACTTCAACCTTTTGCACTTAAAGAATAGCCTTACCATTAAATCAAGTTTTTC
Alignments
lowQualScore : 5555555555555555555 11 111111 1 1111111 3333333333333333333 4444444444444444 7777777777777777777777777777777 111 11 11 11 11 11 444444444444444 1 1 1 22222
lowQualScore : 0 1 3 11 1 88 2 6666 3 5555555555555555555 1 3 11 4 0 111111 4 4 22 0 0 3333333 0000000000000000000 4 77 0000000000000000 66 0000000000000000000000000000000 8 111 44 33 33 8 1 1 11 44 444444444444444 0 1 88 5 7 0 55555 1
lowQualScore : . . . .. . .. . .... . ................... . . .. . . ...... . . .. . . ....... ................... . .. ................ .. ............................... . ... .. .. .. . . . .. .. ............... . . .. . . . ..... .
lowQualScore : 8 0 1 11 9 44 9 1111 3 0000000000000000000 8 5 99 0 7 555555 0 8 00 1 0 4444444 9999999999999999999 4 99 2222222222222222 11 8888888888888888888888888888888 0 888 44 66 00 0 0 0 00 22 888888888888888 0 0 00 0 0 0 00000 0
consensus : AAAGAGCTAGGTACGNT-ATGCAGCAAAATCG-GCC----CTGTCTTCAAAT-TTCATCA---------A----A----ATACGTAAAGTGCCCACAAC-GTG-CCA------TTGT-CAGAACACGTTANNTTTTCCTTATA-TCTCGTGTAGTTTTTTTT--GTAAGAG-T-A--G--T-AAATATAGCGTTGTTTC--TTACAAAAAC-----A---A-----C--GCAAGTAACGTCATGACGTCGACGTTTATTG--AAGCGTATC----TGGAAA--TC---GCA-AGC-A-AGAA-GCTA-ACTTG-AAATTGCTTTT-TTAGCNCANGG--ATTTAATGCT---T-GATATA---ATACC-TTNTACTCTCTCAATAAAATGGGTCAGGATA-TTT-----CTAATCCTGAATGGA
Reference ( family-359 ) : AAAGAGCTAGGTACGNT-ATGCAGCAAAATCG-GCC----CTGTCTTCAAAT-TTCATCA---------A----A----ATACGTAAAGTGCCCACAAC-GTG-CCA------TTGT-CAGAACACGTTANNTTTTCCTTATA-TCTCGTGTAGTTTTTTTT--GTAAGAG-T-A--G--T-AAATATAGCGTTGTTTC--TTACAAAAAC-----A---A-----C--GCAAGTAACGTCATGACGTCGACGTTTATTG--AAGCATATC----TGGAAA--TC---GCA-AGC-A-AGAA-GCTA-ACTTG-AAATTGCTTTT-TTAGCNCANGG--ATTTAATGCT---T-GATATA---GTACC-TTNTACTNTTTCAATAAAATGGGTCAGGATA-TTT-----CNAATCCTGAATGGA
gi|1 : AAAGAGCTAGGTACGTT-ATCCAGCAAAAGGG-GCC----CTGTCTTCAAAT-TTTATCA---------A----ATTACATACATTAGACACCCATAAT-ATG-C
gi|1 : -AAATATAGCGTTGTTTC--TTACAAAAAC---------------C--GCACATGACGTCATGACGTCAAAGTTTGT-G--AA-CATATC-------ACA--TC---GGATAGC-ATACGA-ACTA-CTTTC-AATTTGTTTTTATTAGCTCAATG--ATTTCATGCT---TTGTTAAA---ATACC-TTGTACCATCTCAATAAAATGGATCAGGATA-TTTTCATATCAATCTTGAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatagcgttgtttcttacaaaaaccgcacatgacgtcatgacgtcaaagtttgtgaacatatcacatcggatagcatacgaactactttcaatttgtttttattagctcaatgatttcatgctttgttaaaataccttgtaccatctcaataaaatggatcaggatattttcatatcaatcttgactttattgcacttaaagaatcacattacctttcacatctattcttcc
gi|10 : aaagagctaggtacgttatccagcaaaaggggccctgtcttcaaattttatcaaattacatacattagacacccataatatgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGCATCAAAATGG-ACC----CTAT-TTCAAATATCCATCA---------ACCAAA----GTATGTAAGGTGCCCACAAC-CTATTCA------TTCTAAAGACCAC---AAAT----CTCATA-T--------GTTTTTTCT------------------T-ATATA-AGCGTTGTTTCCTTTAAAAAAAA-----AAAGA-----C--ACAAGTAAAATCActttattgcacttaaagaatcacattacctttcacatctattcttcc
gi|11 : aaTTTT-TTGGGGCCAGGCAATC--ATGCTGTGT-GA---A---ATACCGTTGTAC-CTCTCAATAAAAT-GATCAGG-TAGTTT-----CTATTC
gi|12 : atttattCA------CTGT-CAGAACACGTTACCTTTTCATTGTA-TCTTGTATAGCTTTTT-----TAAAAA-T-------T-AAATATAGCATTGTTTC--TAACAACAAC-----A---AAAATCC--GCAAGCAACGTCATGACGTCGAatacttcaaccttttgcacttaaagaatagccttaccattaaatcaagtttttc
gi|13 : -----C--GCAAATAACCTCAGGATATCGACGTTTATTGAAAAG-GTATT----TGGAAA--TG---ACA-AGCTA-AGAA---TA-ACTTGTAAA
gi|14 : taaaaaccctaccAGCTAAGTCCATT-ATGTAGCAAAACCG-GGC----CTGTCTTT-AAT-TTCATCA---------A----A----AAACGTCAGATGggcc
gi|15 : AAGAGCTAGCTTCGTTTATCCAGCAAAAGGGCGCC----CTGTCatacatgtacaatatg
gi|16 : AAGAGCTAGGTTCGTT-TTCCAGCAAAAGGG-GCC----CTGTCTTCAAAT-TTcctttcctattttg
gi|17 : AAGAGCTGGGTACAGT-AAGCATCAAAATCG-CCC----CTGACT
gi|2 : AAAGAGCCAGGTATAAT-ATGAAGGAAAATCG-GCC---------TTCAAAA-TTCATGA---------A----ATCAAATGGACAAAGTATCCACAAA-ATG-TCA------TTGT-CAATACACATTATTTTTTCCATATA-TCCCATGTATTTTTTTTTTGGTGAGAT-TTA--G--TTAAATGTAGCGTTATTTC--TGACAAAAA----------A-----C--ACAAATAACGTCATGAAATCGACGTTTATAT--AAACGT--CA---TGGAA----T---GCA-AG-----AAA-ACTACACTTG-AAATTGCTTTT-TTAGCACACGG--ATTTAAAGCT---T-GATATACCGGTACC-TTTTACTTTTTCAATAAGATGGGTCAGGATA-TAT-----CAAATCCTAAATGGA
gi|3 : acagttttcagtcttttacatggatttagcatcccAAAGAGCTGGGTATGGT-AAGCATCAAAATCG-GCC----CTGTCTTCCAAT-TTCTTCA---------A----A----ATATATAAAGTGTCCACAAC-TTA-CCA------ATGT-CAGAACACATTACTTTTTTCTTGTA-TCTCATATAGTGTCCTTT---TAAAAG-T-AAGG--T-GAATATAGCATTGTTTC--TTACAAAAACCAGCAA---A-----CCTGCAAGTAACATCATGATGTCGACGTTTATTG--ACACATACCGCTTTAGAAAAGTT---ACA-AGC-A-AGAA-GCTA-ACGTG-AAAATGCCTTT-TTGGTTCATGG--ATTC-ATG--------------------T-TTCTGCTCTTTTATTGAAAT-GGTTAGGGTA-ATT-----CTAATTCTGAATGGAa
gi|4 : AAAGAGCTAAATACAAC-GAACATGAAAATTG-GCC----CCGTCTTCAAAT-TTCATCAAATT-----A----A----ATTCCTAAAGTGCCCATAAT-GTG-CTC------TTAT-CAGAATGCGTT
gi|5 : ttttgattaatttgaaacattctcttatcaggtgaaattctctatccttcgacgttagcctaaaatttggatcacaaaaataatcaatgttatatcaatgatgtaaataccatcgtagcaagtatttgagcggatctaacatctgttaacgtattttgaaatcgcttgatatatctatcgacactaacgaatcgtgaaaacaccgcaagttatacagccacAAAGAGCTAGGCATGTT-ATGCAACAAAATTT-ACCCTAGCTGTCTTCAAAT-TTCATTAATTAAAATTA----A----ATACGCAAAATGCCAATAAT-GTC-CCATTCAATTTGT-CAGAACCCATTAATTGTTCCTTATA-TGTC------TTTTTCTT--ATAAGAG-T-------T-ATACATAGCATT-TTTC--TTACAAAAAA-----G---A-----C--ACAct
gi|5 : ggatttcagCAAAAA------A---A-----G--GCAGATAATGTCATGACGCGGACTTTTA------AGAACA---------AAG--TCAAGGAA-AGC-A-AGAAAGCTA--CTC--AAATTGCTTCT-TTAGCACAGAG--ATTTAATGCT---T-CATATA---caccccccccatcccccccccaaaaaaaggcagataatgtcatgacgcggacttttaagaacaaagtcaaggaaagcaagaaagctactcaaattgcttctttagcacagagatttaatgcttcatata
gi|6 : ggatttcagaaagagctaggcatgttatgcaacaaaatttaccctagctgtcttcaaatttcattaattaaaattaaatacgcaaaatgccaataatgtcccattcaatttgtcagaacccattaattgttccttatatgtctttttcttataagagttatacatagcatttttcttacaaaaaagacacacaccccccccatccccccccAAAGCTCAATACAAC-GAGCATAAAAATTG-GCC----CCGTCTTCAAAT-TTCATCAAATT-----A----A----ATGCCTAAAGTGTCCACAAT-GTG-CTC------TTAC-CAGAATAAGTT
gi|7 : tttgattaatttgaaacattctcttatcagatgaaattctctaactttcgacgttagcctaaagttcggatcacaaaaataatcaatgctatatcaatgatgtaaatgccagtgtagcaagtattggagtggatctaagataaacgtattttgaaatcgcttggtatatctgtcgacactaacgaatcgtgaaaacaccgcaattcataaagccacAAAGAGCTGGGTACAGT-AAGCATCAAAATCG-CCC----CTG-------AC-TTCAT-------------------------GTAAGGAGTCAACAAC-CTA-CAA------CTGT-AAAAACACGTTAAATTTGCCTTGTA-TCTCATTTAGTTTTCTTT---TAAGAA-T-A--AGTT-AAAAATTGCATTGGTTC--TTA-AAA--------A---A-----C--GCAAGTctgtc
gi|8 : acaatttgtcaattaataaataatacccttcAAGAGCTAGGTTCGTT-ATCCAGCAAAA----GCC----CTGTCTTCAAAT-TTTATCA---------A----ATTACATACATAAA---CCCATAACTATG-TGA------TCAT-CAGAACACCTTAGATTTTCCTTACATTCTCTTGTCG--TTTTTA--GTAAAAGTT-A--G--T-tcaatattaagatg
gi|9 : AAGAGCTAGGTTCGTT-ATCCAGCAAAA----GCC----CTGTCTTCAAAT-TTTATCA---------A----ATTACATACATAAA---CCCATAACTATG-TGA------TCAT-CAGAACACCTTAGATTTTCCTTACATTCTCTTGTCG--TTTTTA--GTAAAAGTT-A--G--T-ttaaagtgagttgaaacaacattg
Alignments
lowQualScore : 5555555555555555555 11 111111 1 1111111 3333333333333333333 4444444444444444 7777777777777777777777777777777 111 11 11 11 11 11 444444444444444 1 1 1 22222
lowQualScore : 0 1 3 11 1 88 2 6666 3 5555555555555555555 1 3 11 4 0 111111 4 4 22 0 0 3333333 0000000000000000000 4 77 0000000000000000 66 3333333333333333333333333333333 8 111 44 33 33 8 1 1 11 44 111111111111111 0 1 77 5 7 0 55555 1
lowQualScore : . . . .. . .. . .... . ................... . . .. . . ...... . . .. . . ....... ................... . .. ................ .. ............................... . ... .. .. .. . . . .. .. ............... . . .. . . . ..... .
lowQualScore : 8 0 1 11 9 44 9 1111 3 0000000000000000000 8 5 99 0 7 555555 0 8 00 1 0 4444444 9999999999999999999 4 99 2222222222222222 11 4444444444444444444444444444444 0 888 44 66 00 0 0 0 00 22 333333333333333 0 0 22 0 0 0 00000 2
consensus : AAAGAGCTAGGTACGNT-ATGCAGCAAAATCG-GCC----CTGTCTTCAAAT-TTCATCA---------A----A----ATACGTAAAGTGCCCACAAC-GTG-CCA------TTGT-CAGAACACGTTANNTTTTCCTTATA-TCTCGTGTAGTTTTTTTT--GTAAGAG-T-A--G--T-AAATATAGCGTTGTTTC--TTACAAAAAC-----A---A-----C--GCAAGTAACGTCATGACGTCGACGTTTATTG--AAGCGTATC----TGGAAA--TC---GCA-AGC-A-AGAA-GCTA-ACTTG-AAATTGCTTTT-TTAGCNCANGG--ATTTAATGCT---T-GATATA---ATACC-TTNTACTCTCTCAATAAAATGGGTCAGGATA-TTT-----CTAATCCTGAATGGA
Reference ( family-359 ) : AAAGAGCTAGGTACGNT-ATGCAGCAAAATCG-GCC----CTGTCTTCAAAT-TTCATCA---------A----A----ATACGTAAAGTGCCCACAAC-GTG-CCA------TTGT-CAGAACACGTTANNTTTTCCTTATA-TCTCGTGTAGTTTTTTTT--GTAAGAG-T-A--G--T-AAATATAGCGTTGTTTC--TTACAAAAAC-----A---A-----C--GCAAGTAACGTCATGACGTCGACGTTTATTG--AAGCGTATC----TGGAAA--TC---GCA-AGC-A-AGAA-GCTA-ACTTG-AAATTGCTTTT-TTAGCNCANGG--ATTTAATGCT---T-GATATA---ATACC-TTNTACTCTCTCAATAAAATGGGTCAGGATA-TTT-----CTAATCCTGAATGGA
gi|1 : AAAGAGCTAGGTACGTT-ATCCAGCAAAAGGG-GCC----CTGTCTTCAAAT-TTTATCA---------A----ATTACATACATTAGACACCCATAAT-ATG-C
gi|1 : -AAATATAGCGTTGTTTC--TTACAAAAAC---------------C--GCACATGACGTCATGACGTCAAAGTTTGT-G--AA-CATATC-------ACA--TC---GGATAGC-ATACGA-ACTA-CTTTC-AATTTGTTTTTATTAGCTCAATG--ATTTCATGCT---TTGTTAAA---ATACC-TTGTACCATCTCAATAAAATGGATCAGGATA-TTTTCATATCAATCTTGAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatagcgttgtttcttacaaaaaccgcacatgacgtcatgacgtcaaagtttgtgaacatatcacatcggatagcatacgaactactttcaatttgtttttattagctcaatgatttcatgctttgttaaaataccttgtaccatctcaataaaatggatcaggatattttcatatcaatcttgactttattgcacttaaagaatcacattacctttcacatctattcttcc
gi|10 : aaagagctaggtacgttatccagcaaaaggggccctgtcttcaaattttatcaaattacatacattagacacccataatatgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGCATCAAAATGG-ACC----CTAT-TTCAAATATCCATCA---------ACCAAA----GTATGTAAGGTGCCCACAAC-CTATTCA------TTCTAAAGACCAC---AAAT----CTCATA-T--------GTTTTTTCT------------------T-ATATA-AGCGTTGTTTCCTTTAAAAAAAA-----AAAGA-----C--ACAAGTAAAATCActttattgcacttaaagaatcacattacctttcacatctattcttcc
gi|11 : aaTTTT-TTGGGGCCAGGCAATC--ATGCTGTGT-GA---A---ATACCGTTGTAC-CTCTCAATAAAAT-GATCAGG-TAGTTT-----CTATTC
gi|12 : atttattCA------CTGT-CAGAACACGTTACCTTTTCATTGTA-TCTTGTATAGCTTTTT-----TAAAAA-T-------T-AAATATAGCATTGTTTC--TAACAACAAC-----A---AAAATCC--GCAAGCAACGTCATGACGTCGAatacttcaaccttttgcacttaaagaatagccttaccattaaatcaagtttttc
gi|13 : -----C--GCAAATAACCTCAGGATATCGACGTTTATTGAAAAG-GTATT----TGGAAA--TG---ACA-AGCTA-AGAA---TA-ACTTGTAAA
gi|14 : taaaaaccctaccAGCTAAGTCCATT-ATGTAGCAAAACCG-GGC----CTGTCTTT-AAT-TTCATCA---------A----A----AAACGTCAGATGggcc
gi|15 : AAGAGCTAGCTTCGTTTATCCAGCAAAAGGGCGCC----CTGTCatacatgtacaatatg
gi|16 : AAGAGCTAGGTTCGTT-TTCCAGCAAAAGGG-GCC----CTGTCTTCAAAT-TTcctttcctattttg
gi|17 : AAGAGCTGGGTACAGT-AAGCATCAAAATCG-CCC----CTGACT
gi|2 : AAAGAGCCAGGTATAAT-ATGAAGGAAAATCG-GCC---------TTCAAAA-TTCATGA---------A----ATCAAATGGACAAAGTATCCACAAA-ATG-TCA------TTGT-CAATACACATTATTTTTTCCATATA-TCCCATGTATTTTTTTTTTGGTGAGAT-TTA--G--TTAAATGTAGCGTTATTTC--TGACAAAAA----------A-----C--ACAAATAACGTCATGAAATCGACGTTTATAT--AAACGT--CA---TGGAA----T---GCA-AG-----AAA-ACTACACTTG-AAATTGCTTTT-TTAGCACACGG--ATTTAAAGCT---T-GATATACCGGTACC-TTTTACTTTTTCAATAAGATGGGTCAGGATA-TAT-----CAAATCCTAAATGGA
gi|3 : acagttttcagtcttttacatggatttagcatcccAAAGAGCTGGGTATGGT-AAGCATCAAAATCG-GCC----CTGTCTTCCAAT-TTCTTCA---------A----A----ATATATAAAGTGTCCACAAC-TTA-CCA------ATGT-CAGAACACATTACTTTTTTCTTGTA-TCTCATATAGTGTCCTTT---TAAAAG-T-AAGG--T-GAATATAGCATTGTTTC--TTACAAAAACCAGCAA---A-----CCTGCAAGTAACATCATGATGTCGACGTTTATTG--ACACATACCGCTTTAGAAAAGTT---ACA-AGC-A-AGAA-GCTA-ACGTG-AAAATGCCTTT-TTGGTTCATGG--ATTC-ATG--------------------T-TTCTGCTCTTTTATTGAAAT-GGTTAGGGTA-ATT-----CTAATTCTGAATGGAa
gi|4 : AAAGAGCTAAATACAAC-GAACATGAAAATTG-GCC----CCGTCTTCAAAT-TTCATCAAATT-----A----A----ATTCCTAAAGTGCCCATAAT-GTG-CTC------TTAT-CAGAATGCGTT
gi|5 : ttttgattaatttgaaacattctcttatcaggtgaaattctctatccttcgacgttagcctaaaatttggatcacaaaaataatcaatgttatatcaatgatgtaaataccatcgtagcaagtatttgagcggatctaacatctgttaacgtattttgaaatcgcttgatatatctatcgacactaacgaatcgtgaaaacaccgcaagttatacagccacAAAGAGCTAGGCATGTT-ATGCAACAAAATTT-ACCCTAGCTGTCTTCAAAT-TTCATTAATTAAAATTA----A----ATACGCAAAATGCCAATAAT-GTC-CCATTCAATTTGT-CAGAACCCATTAATTGTTCCTTATA-TGTC------TTTTTCTT--ATAAGAG-T-------T-ATACATAGCATT-TTTC--TTACAAAAAA-----G---A-----C--ACAct
gi|5 : ggatttcagCAAAAA------A---A-----G--GCAGATAATGTCATGACGCGGACTTTTA------AGAACA---------AAG--TCAAGGAA-AGC-A-AGAAAGCTA--CTC--AAATTGCTTCT-TTAGCACAGAG--ATTTAATGCT---T-CATATA---caccccccccatcccccccccaaaaaaaggcagataatgtcatgacgcggacttttaagaacaaagtcaaggaaagcaagaaagctactcaaattgcttctttagcacagagatttaatgcttcatata
gi|6 : ggatttcagaaagagctaggcatgttatgcaacaaaatttaccctagctgtcttcaaatttcattaattaaaattaaatacgcaaaatgccaataatgtcccattcaatttgtcagaacccattaattgttccttatatgtctttttcttataagagttatacatagcatttttcttacaaaaaagacacacaccccccccatccccccccAAAGCTCAATACAAC-GAGCATAAAAATTG-GCC----CCGTCTTCAAAT-TTCATCAAATT-----A----A----ATGCCTAAAGTGTCCACAAT-GTG-CTC------TTAC-CAGAATAAGTT
gi|7 : tttgattaatttgaaacattctcttatcagatgaaattctctaactttcgacgttagcctaaagttcggatcacaaaaataatcaatgctatatcaatgatgtaaatgccagtgtagcaagtattggagtggatctaagataaacgtattttgaaatcgcttggtatatctgtcgacactaacgaatcgtgaaaacaccgcaattcataaagccacAAAGAGCTGGGTACAGT-AAGCATCAAAATCG-CCC----CTG-------AC-TTCAT-------------------------GTAAGGAGTCAACAAC-CTA-CAA------CTGT-AAAAACACGTTAAATTTGCCTTGTA-TCTCATTTAGTTTTCTTT---TAAGAA-T-A--AGTT-AAAAATTGCATTGGTTC--TTA-AAA--------A---A-----C--GCAAGTctgtc
gi|8 : acaatttgtcaattaataaataatacccttcAAGAGCTAGGTTCGTT-ATCCAGCAAAA----GCC----CTGTCTTCAAAT-TTTATCA---------A----ATTACATACATAAA---CCCATAACTATG-TGA------TCAT-CAGAACACCTTAGATTTTCCTTACATTCTCTTGTCG--TTTTTA--GTAAAAGTT-A--G--T-tcaatattaagatg
gi|9 : AAGAGCTAGGTTCGTT-ATCCAGCAAAA----GCC----CTGTCTTCAAAT-TTTATCA---------A----ATTACATACATAAA---CCCATAACTATG-TGA------TCAT-CAGAACACCTTAGATTTTCCTTACATTCTCTTGTCG--TTTTTA--GTAAAAGTT-A--G--T-ttaaagtgagttgaaacaacattg
blockSeqs : T T TG T TG C CTAG A ATTAAAATTAA G G TA T TTCAAT . G CC T GTATAGC TTGGTGAGATTTAG T CT CAAAAATC CT TTGACACATACCGCTTTAGAAAAGTT . TA AG CA GT . G A CA TA TGATATACCGG G G TT G A G . T
blockSeqs : T . TC G CC . . . ACCAAA G A TA . . . A TT T ATGTATT TTAAAAGTAAGG . . CCAGCAAA . TTGAAAAGGTATTTGGAAATG . A A A G . A C . TA GTGTGAAA . T TC . G . . A
blockSeqs : T . TC G GG . . . AATCAA A G C . . . A CT . ATATAGT TTAAGAATAAGT . . AAAAGA . TATAAACGTCATGGAAT . A G A G . T T . C . . C C . . . . T
blockSeqs : G . AG G GG . . . AATTAA A G A . . . G AT . ATTTAGT AGTAAAAGTTAG . . AGA . AGAACAAAGTCAAG . . . . . . A G . .
blockSeqs : A . TG T TC . . . AATTAA C G T . . . A AA . TTGTCG AGTAAAAGTTAG . . AA .
blockSeqs : G . AG G TC . . . AATTAC G A G . . . G GA . TTGTCG TATAAGAGT . . AA .
blockSeqs : A . AA T TC . . . AATTAC C G G . . . G GA . T TAAAAAT . A .
blockSeqs : T . TG T TT . . . AA G G G . . . C . .
blockSeqs : A . AG A TT . . . AA A . C . . . C
blockSeqs : G . AG T TT . . . . A .
blockSeqs : T . TC T TC . . .
blockSeqs : T . TC G . . .
blockSeqs : G . . .
blockSeqCons : ATATAGT NNNAAAANNNGG******* AA************** TGAAAAGTATGAAAT**************** A**
originalCons : AAAGAGCTAGGTACGNT-ATGCAGCAAAATCG-GCC----CTGTCTTCAAAT-TTCATCA---------A----A----ATACGTAAAGTGCCCACAAC-GTG-CCA------TTGT-CAGAACACGTTANNTTTTCCTTATA-TCTCGTGTAGTTTTTTTT--GTAAGAG-T-A--G--T-AAATATAGCGTTGTTTC--TTACAAAAAC-----A---A-----C--GCAAGTAACGTCATGACGTCGACGTTTATTG--AAGCGTATC----TGGAAA--TC---GCA-AGC-A-AGAA-GCTA-ACTTG-AAATTGCTTTT-TTAGCNCANGG--ATTTAATGCT---T-GATATA---ATACC-TTNTACTCTCTCAATAAAATGGGTCAGGATA-TTT-----CTAATCCTGAATGGA
finalCons : AAAGAGCTAGGTACGNT-ATGCAGCAAAATCG-GCC----CTGTCTTCAAAT-TTCATCA---------A----A----ATACGTAAAGTGCCCACAAC-GTG-CCA------TTGT-CAGAACACGTTANNTTTTCCTTATA-TCTCATATAGTTTTTTTNNNAAAANNNGG-------T-AAATATAGCGTTGTTTC--TTACAAAAAAA--------------C--GCAAGTAACGTCATGACGTCGACGTTTATGAAAAGTATGAAAT----------------GCA-AGCA--AGAA-GCTA-ACTTG-AAATTGCTTTT-TTAGCNCANGG--ATTTAATGCT---T-GATATA---ATACC-TTNTACTCTCTCAATAAAATGGGTCAGGATA-TTT-----CTAATCCTGAATGGA
Alignments
lowQualScore : 5555555555555555555 11 111111 22222222 22222222222 111 333333333333333 11111 1111 111111111111111 6666666666666666666666666666666666 111 11 11 11 11 11 444444444444444 1 1 1 22222
lowQualScore : 0 1 3 11 1 88 2 6666 3 5555555555555555555 1 3 11 4 0 111111 4 4 55 88888888 33333333333 3 222 666666666666666 0 0 44444 77 11 1 2222 888888888888888 66 2222222222222222222222222222222222 8 111 44 33 33 8 1 1 11 44 111111111111111 0 1 77 5 7 0 55555 1
lowQualScore : . . . .. . .. . .... . ................... . . .. . . ...... . . .. ........ ........... . ... ............... . . ..... .. .. . .... ............... .. .................................. . ... .. .. .. . . . .. .. ............... . . .. . . . ..... .
lowQualScore : 8 0 1 11 9 44 9 1111 3 0000000000000000000 8 5 99 0 7 555555 0 8 55 11111111 88888888888 1 000 999999999999999 1 4 33333 99 77 4 1111 999999999999999 99 0000000000000000000000000000000000 0 888 44 66 00 0 0 0 00 22 333333333333333 0 0 22 0 0 0 00000 2
consensus : AAAGAGCTAGGTACGNT-ATGCAGCAAAATCG-GCCCT----GTCTTCAAAT-TTCATCA----A---------A----ATACGTAAAGTGCCCACAAC-GTG-CCATT------GT-CAGAACACGTTANNTTTTCCTTATAT-------TCTCATG-----------TAG--TTTTTTT---TNNAAAATNNGGTAAATATAGCGT-----TGTTTC--TTACAA----AA------AA----A--C--GCAAGTAACGTCATGACGTCGACGTTTATTG-AA--AA-GT-AT-------GAAA---T-G-CA-AGC-A-AGAA-GCTA-ACTTG-AAATTGCTTTT-TTAGCNCANGG--ATTTAATGCT---T-GATATA---ATACC-TTNTACTCTCTCAATAAAATGGGTCAGGATA-TTT-----CTAATCCTGAATGGA
Reference ( family-359 ) : AAAGAGCTAGGTACGNT-ATGCAGCAAAATCG-GCCCT----GTCTTCAAAT-TTCATCA----A---------A----ATACGTAAAGTGCCCACAAC-GTG-CCATT------GT-CAGAACACGTTANNTTTTCCTTATA--------TCTCATA-----------TAG--TTTTTTT---NNNAAAANNNGGTAAATATAGCGT-----TGTTTC--TTACAA----AA------AA----A--C--GCAAGTAACGTCATGACGTCGACGTTTA-TG-AA--AA-GT-AT-------GAAA---T-G-CA-AGC-A-AGAA-GCTA-ACTTG-AAATTGCTTTT-TTAGCNCANGG--ATTTAATGCT---T-GATATA---ATACC-TTNTACTCTCTCAATAAAATGGGTCAGGATA-TTT-----CTAATCCTGAATGGA
gi|1 : AAAGAGCTAGGTACGTT-ATCCAGCAAAAGGG-GCCCT----GTCTTCAAAT-TTTATCA----A---------ATTACATACATTAGACACCCATAAT-ATG-C
gi|1 : AAATATAGCGT-----TGTTTC--TTACAA----AA------AC-------C--GCACATGACGTCATGACGTCAAAGTTTG-TG-AA--CA--T-AT-------CACA---TCG-GATAGC-ATACGA-ACTA-CTTTC-AATTTGTTTTTATTAGCTCAATG--ATTTCATGCT---TTGTTAAA---ATACC-TTGTACCATCTCAATAAAATGGATCAGGATA-TTTTCATATCAATCTTGAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatagcgttgtttcttacaaaaaccgcacatgacgtcatgacgtcaaagtttgtgaacatatcacatcggatagcatacgaactactttcaatttgtttttattagctcaatgatttcatgctttgttaaaataccttgtaccatctcaataaaatggatcaggatattttcatatcaatcttgactttattgcacttaaagaatcacattacctttcacatctattcttcc
gi|10 : aaagagctaggtacgttatccagcaaaaggggccctgtcttcaaattttatcaaattacatacattagacacccataatatgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGCATCAAAATGG-ACCCT----AT-TTCAAATATCCATCA----ACCAA-----A----GTATGTAAGGTGCCCACAAC-CTATTCATT------CTAAAGACCAC--------------AAA--------TCTCATA-----------T-G--TTTTTTC---T-----------TATATA-AGCGT-----TGTTTCCTTTAAAA----AA------AAAAAGA--C--ACAAGTAAAATCActttattgcacttaaagaatcacattacctttcacatctattcttcc
gi|11 : aaTTTT-TTGGGGCCAGGCAATC--ATGCTGTGT-GA---A---ATACCGTTGTAC-CTCTCAATAAAAT-GATCAGG-TAGTTT-----CTATTC
gi|12 : atttattCACT------GT-CAGAACACGTTACCTTTTCATTGTA--------TCTTGTA-----------TAG--CTTTTTT-----AAAAAT----TAAATATAGCAT-----TGTTTC--TAACAACAACAA------AA----ATCC--GCAAGCAACGTCATGACGTCGAatacttcaaccttttgcacttaaagaatagccttaccattaaatcaagtttttc
gi|13 : --C--GCAAATAACCTCAGGATATCGACGTTTATTG-AA--AAGGT-ATTTG----GAAA---T-GACA-AGCTA-AGAA---TA-ACTTGTAAA
gi|14 : taaaaaccctaccAGCTAAGTCCATT-ATGTAGCAAAACCG-GGCCT----GTCTTT-AAT-TTCATCA----A---------A----AAACGTCAGATGggcc
gi|15 : AAGAGCTAGCTTCGTTTATCCAGCAAAAGGGCGCCCT----GTCatacatgtacaatatg
gi|16 : AAGAGCTAGGTTCGTT-TTCCAGCAAAAGGG-GCCCT----GTCTTCAAAT-TTcctttcctattttg
gi|17 : AAGAGCTGGGTACAGT-AAGCATCAAAATCG-CCCCT----GACT
gi|2 : AAAGAGCCAGGTATAAT-ATGAAGGAAAATCG-GCC---------TTCAAAA-TTCATGA----A---------ATCAAATGGACAAAGTATCCACAAA-ATG-TCATT------GT-CAATACACATTATTTTTTCCATATA--------TCCCATG-----------TAT--TTTTTTTTTGGTGAGATTTAGTTAAATGTAGCGT-----TATTTC--TGAC-A----AA------AA----A--C--ACAAATAACGTCATGAAATCGACGTTTA-TATAA--AC-GTCAT-------GGAA---T-G-CA-AG-----AAA-ACTACACTTG-AAATTGCTTTT-TTAGCACACGG--ATTTAAAGCT---T-GATATACCGGTACC-TTTTACTTTTTCAATAAGATGGGTCAGGATA-TAT-----CAAATCCTAAATGGA
gi|3 : acagttttcagtcttttacatggatttagcatcccAAAGAGCTGGGTATGGT-AAGCATCAAAATCG-GCCCT----GTCTTCCAAT-TTCTTCA----A---------A----ATATATAAAGTGTCCACAAC-TTA-CCAAT------GT-CAGAACACATTACTTTTTTCTTGTA--------TCTCATA-----------TAG--TGTCCTT---TTAAAAGTAAGGTGAATATAGCAT-----TGTTTC--TTACAA----AAACCAGCAA----A--CCTGCAAGTAACATCATGATGTCGACGTTTATTG-AC--AC-AT-ACCGCTTTAGAAAAGTT-A-CA-AGC-A-AGAA-GCTA-ACGTG-AAAATGCCTTT-TTGGTTCATGG--ATTC-ATG--------------------T-TTCTGCTCTTTTATTGAAAT-GGTTAGGGTA-ATT-----CTAATTCTGAATGGAa
gi|4 : AAAGAGCTAAATACAAC-GAACATGAAAATTG-GCCCC----GTCTTCAAAT-TTCATCAAATTA---------A----ATTCCTAAAGTGCCCATAAT-GTG-CTCTT------AT-CAGAATGCGTT
gi|5 : ttttgattaatttgaaacattctcttatcaggtgaaattctctatccttcgacgttagcctaaaatttggatcacaaaaataatcaatgttatatcaatgatgtaaataccatcgtagcaagtatttgagcggatctaacatctgttaacgtattttgaaatcgcttgatatatctatcgacactaacgaatcgtgaaaacaccgcaagttatacagccacAAAGAGCTAGGCATGTT-ATGCAACAAAATTT-ACCCTAGCTGTCTTCAAAT-TTCATTA----ATTAAAATTAA----ATACGCAAAATGCCAATAAT-GTC-CCATTCAATTTGT-CAGAACCCATTAATTGTTCCTTATATGTCTTTTTCTTATAAGAGTTATACATAGCATTTTTCT---TACAAAAAAG---ACACACACCCCCCCCATCCCCC--CCCCAA----AA------AA----A--G--GCAGATAATGTCATGACGCGGACTTTTA-AG-AACAAA-GT-C----------AA---G-G-AA-AGC-A-AGAAAGCTA--CTC--AAATTGCTTCT-TTAGCACAGAG--ATTTAATGCT---T-CATATA---ct
gi|6 : ggatttcagAAAGCTCAATACAAC-GAGCATAAAAATTG-GCCCC----GTCTTCAAAT-TTCATCAAATTA---------A----ATGCCTAAAGTGTCCACAAT-GTG-CTCTT------AC-CAGAATAAGTT
gi|7 : tttgattaatttgaaacattctcttatcagatgaaattctctaactttcgacgttagcctaaagttcggatcacaaaaataatcaatgctatatcaatgatgtaaatgccagtgtagcaagtattggagtggatctaagataaacgtattttgaaatcgcttggtatatctgtcgacactaacgaatcgtgaaaacaccgcaattcataaagccacAAAGAGCTGGGTACAGT-AAGCATCAAAATCG-CCCCT----G-------AC-TTCAT-------------------------GTAAGGAGTCAACAAC-CTA-CAACT------GT-AAAAACACGTTAAATTTGCCTTGTA--------TCTCATT-----------TAG--TTTTCTT---TTAAGAATAAGTTAAAAATTGCAT-----TGGTTC--TT---A----AA------AA----A--C--GCAAGTctgtc
gi|8 : acaatttgtcaattaataaataatacccttcAAGAGCTAGGTTCGTT-ATCCAGCAAAA----GCCCT----GTCTTCAAAT-TTTATCA----A---------ATTACATACATAAA---CCCATAACTATG-TGATC------AT-CAGAACACCTTAGATTTTCCTTACAT-------TCTCTTG-----------TCG----TTTTT---AGTAAAAGTTAGTtcaatattaagatg
gi|9 : AAGAGCTAGGTTCGTT-ATCCAGCAAAA----GCCCT----GTCTTCAAAT-TTTATCA----A---------ATTACATACATAAA---CCCATAACTATG-TGATC------AT-CAGAACACCTTAGATTTTCCTTACAT-------TCTCTTG-----------TCG----TTTTT---AGTAAAAGTTAGTttaaagtgagttgaaacaacattg