lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 5555555555 1 66666666666666666666 222222 111111 22222 222222 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 222222 11111 11111 22222222 11111 555555555555555555555555555555555555 1 1 11 4444 1 111111 66666666666 22 1 1 1 1 333333333333333333333333333333333333333333333333333333333333333333333333333 11 1111 333333333 1 2222 77777777777777777777777777777777777 111 222 0000000000000000000000000 1 1 1 111 44444444444444444444444444444 1111 11 11 77777777777777777777 4444444 1
lowQualScore : 9 4444444444 6 6 6 5 2 1 44444444444444444444 666666 2 1 111111 6 66666 555555 8 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 222222 4 11111 4 4 33333 1 44444444 9999 66666 5 66 9 5 444444444444444444444444444444444444 22 55 2 3 0 0 33 5555 7 3 000000 7 33333333333 00 3 3 3 2 777777777777777777777777777777777777777777777777777777777777777777777777777 66 5555 777777777 8 6 3 2222 6 66666666666666666666666666666666666 444 2 2 222 5555555555555555555555555 3 0 3 0 777 6 11111111111111111111111111111 7 0 4444 88 6 7 7 7 55 00000000000000000000 4 2 77 4 4444444 5 2
lowQualScore : . .......... . . . . . . .................... ...... . . ...... . ..... ...... . ....................................................................................................................................... ...... . ..... . . ..... . ........ .... ..... . .. . . .................................... .. .. . . . . .. .... . . ...... . ........... .. . . . . ........................................................................... .. .... ......... . . . .... . ................................... ... . . ... ......................... . . . . ... . ............................. . . .... .. . . . . .. .................... . . .. . ....... . .
lowQualScore : 5 6666666666 0 0 0 6 3 4 66666666666666666666 000000 5 0 888888 7 77777 000000 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 000000 4 11111 4 4 77777 0 22222222 4444 66666 7 11 9 7 444444444444444444444444444444444444 88 88 5 0 0 0 88 0000 3 3 333333 3 33333333333 00 3 3 3 0 777777777777777777777777777777777777777777777777777777777777777777777777777 77 2222 222222222 8 7 3 7777 7 00000000000000000000000000000000000 000 5 0 000 2222222222222222222222222 5 0 2 0 555 5 00000000000000000000000000000 3 7 0000 33 7 0 3 3 55 00000000000000000000 0 5 00 0 5555555 0 5
consensus : ACACGTATAC-ATATG--ATATCTAATTATATACTATAACAACGGGTGAGTGGACATA----------TATAT-A---AATATAAAAGG-----AGAAGTTACAAA---A--TGA-T-ATAATATAATCAC----C-ATTTA-A-------G-------TT-------A-----------CAAGAAA-------A-------T--ACT---AT-----------------AC----T--TG-----CAATGC-----TAAA--------CTT-C-----GCATTT--T-C-C-A-----GCT-T-GTACGA---GGAATTTACCCA-----AATT----ATT----NAGTTCT--TTAGT-ATTNT--CTANACTG-TG--AAGTTTA-ACCG-TTCAAATACACCGGGTTTTGTGCANT-AGA-AA--CCCT--A-ATATATTTCTT-TATTAAATT-ATATAAA-----------ACGGAC-AT-TTCAGAC-TAAAA-TGAAACTCA---CCT-CTAT----ATCGTTATA-T--AACTTATG---AATTCC-------TCGC-ATTC-TTAA---AAA--GCAT-TGTTA-T-GTCTG-------CCCTTTTCGATATTCAA-AGA--A-CGCGAAG-----------CAGTGA-TA-TTCTT--CCCGTTNAA--CTTGATTGG-T-CTTTTAA------G-AT----------AAG--TATNTATTA-AATGT-TGAT---AAAGGGCACTCAATTCNATCNGTANCACATCNATCGTTCTAATGTTAACGCGTATTTTTGTGGTTTATTATAA--TTCAGCATTCATCCATAATCTACACTGCNNTGTTNNTATAGAAGACTGGAATAAAACACTGCCNTNTAAATTNNTNACGGACATGATGGGATGACATTGNCCGTG
Reference ( gi|3 ) : ACAAGTATAA-ATATG--GTATCTAATTATATACTGTGACAACAGGTGATTGGACATA----------CATAT-A---AATATAAAAGG-----AAAAGTTACAAA---A--TGA-T-ATCATATAATCAC----C-ATTTA-A-------G-------TT-------A-----------CAAGAAA-------A-------T--ACT---AT-----------------AT----T--TG-----CAGTGC-----TAAA--------CTT-C-----GCATTT--T-T-C-A-----GCT-T-GTACAA---GGAATTTACCCA-----AATT----ATT----AAGTTCT--TTGGT-ATTTT--CTACACTG-TG--AAGTTTA-ACCGATTCAAATACACCGGGTTTTGTGTAAT-AGA-AA--CCCTTGATATATATTTCTT-TATTAAATTTATATAAA-----------ATGGAC-AT-TTCAGAC-TAAAA-TGAAACTCA---TC----------ATTGTTATA-T--AATTTATG---AATTC--------TTGC-ATTCGTTAATGTAAA-GGCAG-TGTTG-T-GTCTA-------CCCTTTTCCATATTCCA-AGA--A-TGCGAAG-----------TAGTTA-TA-TTTTT--CCCGTTAAA--CTTGATCGG-C-CTTTTAA------G-AT----------AAGT-TATATATTA-AATGT-TGAT---AAAGGGCACTCAATT-AAT-AGTATCATATCAATTGTTTTAATCTTAACGCGTATTTTTGTGGTTCATTATAA--TTCATCATTCATCCATAATCTACACTGCATTGTTTGT-TAG-AAACT-G-AT-AAACACTGCCTTCTAAATTAATTACAGA----AT-GGATGACATTGCCCGTG
gi|7 : ACAAGTACA-----TG--ATATCTAAGAAAATATTATAACAACGGGTGAGGGGACATA-----------------------ATAAA-GG-----AGAAGATA-GAA---A--TCACT-A-AATATAATCAC----C-ATTCA-A-------G-------TT-------ATACGTGTTATACAAGAAA-------A-------TC-ACT---ATTAATAGTTACGAGCTTGAC----T--TT-----TAATGC-----TTAA--------CTT-C-----GCATTT--C-CAC-A-----ACT-T-GTAGGC---GGAATTTACCCATTTATAA-T----ATT----AAGTTCT--TTAGT-A--------GCAC-------AATTTT----CG---TAAATACACTCGGTTTTGTGCACT-AGA-AA--CCCT
gi|8 : tattgaacttaagttgtacaactcatcgaaatataACACGTATAC-ATA----ATATTTAATTATATACTATAACAACAGGTGAGTGGGCATATG--------TATAT-A---AATATAAAAGG-----AGAAGTTACAAA---A--TGA-TAATGTTATAATCAA----G-ATTTA-AGTTACATG-------TT-------A-----------CAAGAAA-------ATATACAGT--ACT---AT-----------------AT----CTGTG-----TAATGA-----TAAA--------
gi|6 : tcaattctctatcgtccttgagggtttataatgcaactcatcggaatataACACGTATAC-ATA----ATATTTAAT-ATATACTATAACAACAG-TGAGTGGGCATA----------TGTAT-ATATAATATAAAAG------AGAAGTTACAAA---AGATAA-T-GTT-TATAATCAA----G-ATTTA-A-------G-------TTCTAATTTA-----------CAAGAAATTATACAG-------T--ACT---AT-----------------AT----C--TG-----TAGTGTAATGATAAAACATGTAACTT-C-----GCATTTC-C-T-C-A-----GCT-T-GTAATG---AGAATTT-CTCACTCTCACTT----GTT----CAGTT-T--TCCCT-ATTCT---TAGTTTA-TG--AGACTTATACCCATTt
gi|5 : cattctctatcgtccttgagggttatatgaatcaaccatcggaaataACATGTATAT-ATGTACAATATGTA--CATGTACCATAACAACGGGTGAATGGACATAACTATACTAGTATAT-A---AATATAAGAGAGAGAAAAAAACTACAAA---A--TGA-T-ATAATTTAAAAAC----C-ATTTC-A-------GTTACACATT-------A-----------CAAGAAA-------AT------T--ACTTTAATTACAATCTCG-------AC----T--TA-----CAATGC-----TTAA--------CTT-C-----GCATTT--T-CAC-ATAAGTGCG-A-GTACGA---GGAA--TATTGA-----ATTT----CCC----AA--TTT--TTAGT-ATTT
gi|10 : taattcaattttttattgtcctgagttataaaatctttggaatataacaaatacatgatctctaattATAATACATG---TGTCTAATTATATACTATAACAACAGGTGAATGG-------------------------------AAAG--------AAGTTACAAA---A--TGA-T-ATg
gi|13 : ttctattctttattgtccttgagttatacaactcatcgaaacataacaaacattcTATCTAATTGTATACTATAACAGCAGGTGAGTGGACATA----------TAt
gi|4 : caattccttattgtccttgagttgtacaactcatcgaaatataacagagatacaaacTGAGTGAACA-A----------GAGATTA---AATGAAAAAAG-----AA---TTATAGATGTA--CAA-T-A--ATGTAATCACATTACGATTTACAC------A-------TT-------G-----------CAAGAA----------------T--GCT---AT-----------------ACAATCT--TGATCCACAATGC-----TAAG--------CTTACATGTAGTATTT--T-C-CCA-----GTT-T-TTACTA---AAACTTTTTTAA-----AATT----ATT----CAATTCT--TTAGT-ATCGT--CTCCGCTA-AGATAAG--TA-ACGGCTT-----------GGTTTT-CGCACT-AGA-AA--CCCC--AGATATATTTC-T-TATT---------TAAGCCCCCCCCCCCACGGA--ATCTTTAGAA-TAAGT-TGAAACTCA---CCTCCTAT----ATCATTATAGTCGCACTTAT----AATTCCCAAAGCTTCGC-ACTC-TTGA---AA----CAT-TGTTT-T-GTCTG--------ACTTTTTGATATT
gi|11 : -------TC-------A-----------CAGGAAA-------A-------TTTACT---AA-----------------AC----T--TA-----C----C-----TACA--------AT--------GCATTT--TCT-C-A-----GCT-T-GTACGA---GAAATTTGCCCA-----AATT----ATTTTAAAAGTTCT--CTAGTAATTGT--CTAGACTG-AA--AAGCTTA-ATTAATT
gi|18 : -----GCACTT--CCT-C-A-----GCT-T-GTATGA---GGAACTTACCTA-----AATT----ATG----CAGTTCT--T
gi|16 : -----GCACTTCCT-C-C-A-----GCT-T-GTATGA---GGAACTTACCTA-----AATT----ATG----CAGTTCT--T
gi|2 : --T-T-C-A-----GCTCT-GCACA-----GAATT-ACC-A-----AATT----ATT----AA-TTCT--TT-GT-ATTTTTCTTACACTG-TGA-AAGTTTA-ACCATTTCAAATACACCGGG-TTTGTGTAATAAGACAA--CCCT--ATATATATTTCTT-TATTAAATTTATAT-AA-----------ATGGACAAT-TTCAGACGTAAAA-TGAAA-TCA---------------ATTG-TATA-T--AA-TTATGACAAATTC--------TTGCAATTCGTTAATG-AAA-AGCAGCTGTTGAT-GTCTA-------CCCTTTTCCTCATTCCACAGATCACCGC-AAG------------AGTTA--A-TTCTT---CTGTTAAA--CTGGATCGGCC-CTTTTAA------GCAT----------AAG--TAAATATTA-AATGT-TGAT---AAAGCGCACTCAATTCAATCAGTAACATATCAA-TG-TTTAATGCTAACGCGTATTATTGTGGTTCA-TA-AA--TT-ATCATTC-TCCATAACCTACACTGCTATGTTGCTATAGAAAACT-GAATAAAACACTGCCTTCTAAATTCATTACAGACATGAT-GGAT-ACATTGC
gi|1 : --T-T-C-A-----ACT-TCATACAATAAGAAATTAAC--------AATTGAAAATT-------TTCTACCTGTC-ATTGA--CTGGACAGCTG--GAGTTT--------TC---TACACCGT-TTTTGTGTAAT-AGA-AAACCCCTTTA-ATATATTTCTTCTCTTAAATTGATATAAA-----------ATGGAC-AT-TTCAGAC-TAAAATTGAAATTCAGCTTCTATTATCATAATTGTTACA-T--AATTTACG---AATTCT-------TTGC-ATTGCCTA---TAAATTACAT-TGTTA-TGGTCTG-------CCCTTTTCAATATTCAA-GGA--A-TGCGAAGATGTTTTGATCCAGTGATTACTTTTT--CCCCTTCAAGGCTTGATTGG-T-CTTTTAATATTATG-ATTGTAAGCAGAAAGTATATTTATTC-A--GT-TGAT---AAA-GGCACTCAATT-CAT-TGT-TTAC-TCTATCATTCTA---TTAACGCGTA--TTTGTGGTTTATTATAAGTTTCAGCATTCATCCATAATCTAC-TTGCGTTATTTG---AA-AGATTGG-AT--AACACTGCTATGTAAATTATTAACGGA----ATGGGATGACATTGGCCGTGaccctgcatcagacaagtcctgtacgtggttctgtttctgtaaagattagcgacaccacagaagtgcaccattagaagggactaggacatgaaggaaatcgtagataaaacctgtacagttaataagaggaaagagaaagactgtaagtggtagtactaggagggattcagtgtgaatcatcggaccaggacctggatgttctgtcatgtaagtcaaaatctaataagcgaatatcctcacaggccaggccttacgatagaaacaaaacacgccatatacaaatggaggacaatctacaccgcctcggagttgtcaaactacagcttctgacactccagacgaaagcatattgcaccatcacagctgttccgtcaatgacaggtctacatctcgcagttacaacgcaacaacacacatttgaaacattaatgcttctaaaggtgtcagagatcactagtcacggtccctgtgctcaatggttttgtcgatttacttgagatttgatctcatggctatgtcattgctggaacactttgtctccataatacgacc
gi|12 : -TGTTA-T-GTCTGGCAGTAGCCTTTTTCAATATTCAA-AGA--A-TGTGAAG----------------A-TG-TTCT---------GAA--TTT-ATTGA-TACTTTTAA------A-A------------A----ATGTATTA-AATGT-TGATATAAAAAGGCACTCtgcatcagaagtcctgtacgtgggttctgtgttcggtaagatagggacaccgacagaagtgaccatcagatagggacgtgagggcatggagagaacatgcataggagaaacctgtacagatatatagaggatgcgagcatgtatgttaagtggtagctattaggagggattcaggtttaaatcatcagacctacgacctggatgttctggttatgtaaccataaactaataagcgatatctcacaggctaggactttacgatagaacaaaacacacattatactgttggagggacaacgattacaccgcctcggatttgtcaaactacaactgttgacatcaccgtcatgacgactacatcgcatcatcagctgttccaagtcaatgacagagtctatatctccagtttactatggaaaacacaattttggaaacagttaatactgccaagagtttcccagagagtcactagtcacgttccctgtgcttagtgggttttgtcggatctttttgaaatttttgattatggttattgtatgcggggacaacactggcctccattaacacaacc
gi|14 : -----------TAGTGA-TA-TTTTTTTCCCATTCAA--GTTGATTGG-T-CTTTTAA------T-AT----------AA---TAT-TATGATAATATATGAT---TAAG
gi|15 : ttTTAACGCGTATTTTTGTGGTTTATATTAA--TTCAGCATTCATCCATAATCTACACcaga
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): TAAGTGGGAGTCGAAGAGAGGATTCAAATTTAAAGGATCAGACCTGGGACTTTATGTCCTGGCCTGTTAACCACAAATTAATTTGGTAATTTAATCCAAGGAAGGGATTATGATACCGTGTAAGATATACCTGTGATTTTGATGGAATAATTGTTGAGGACACGCCCTGGGATTTG
Unaligned ( gi|17 ): ATTTCTTGAAATTGATCATGGTTATTGTATTGCGGGGACACACTGGCC
Unaligned ( gi|19 ): ATTCAATTCTTTATTGTCTTGAGTTATACAACTCATTGGAATATAACA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222 4444444444444444444444 111 1111 111111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22222222 1111111 2 11111 22222 11111 11111 22222222222222 11 4444 111 1 22 5555555555555 111 1 1 8888888888888888 1111 1 111 4444444444444444444444444444444444444 11 2222222 1 11111 6666666666666 1111 111111 11 7777777777777777777777777 111 222222 1 1 111 11 3333 1 333333 4444444
lowQualScore : 0 55555 3 1 0 1111111111111111111111 000 2222 77 5 5 5 999 999999 6 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 00000000 3333333 66 2 4 11111 4 4 0 4 6 4 22222 00000 1 3 5 22222 1 1 77 77 5 99999999999999 0 1 8 8 11 3333 666 0 33 2222222222222 2 111 0 0 6 0000000000000000 2 3 4444 0 2 777 1111111111111111111111111111111111111 00 8 8 6666666 6 3 0 66666 2 2222222222222 0000 0 222222 1 11 8 8 1111111111111111111111111 8 8 0 8 444 3 777777 88 88 1 2 2 333 3 3 3 33 2 2 3 3 22 4444 2 444444 1 1 22 1 0 9999999 6 1
lowQualScore : . ..... . . . ...................... ... .... .. . . . ... ...... . .................................................................................................. ........ ....... .. . . ..... . . . . . . ..... ..... . . . ..... . . .. .. . .............. . . . . .. .... ... . .. ............. . ... . . . ................ . . .... . . ... ..................................... .. . . ....... . . . ..... . ............. .... . ...... . .. . . ......................... . . . . ... . ...... .. .. . . . ... . . . .. . . . . .. .... . ...... . . .. . . ....... . .
lowQualScore : 2 11111 9 4 1 8888888888888888888888 111 1111 99 7 7 7 444 222222 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 77777777 3333333 11 2 4 11111 4 4 1 4 4 7 22222 44444 1 6 0 00000 0 7 66 99 7 00000000000000 8 0 0 0 00 0000 222 0 22 8888888888888 5 000 0 0 5 0000000000000000 0 2 8888 5 5 555 0000000000000000000000000000000000000 88 0 0 0000000 4 0 0 88888 5 8888888888888 8888 8 444444 0 00 0 0 8888888888888888888888888 8 0 8 0 000 2 000000 33 00 0 0 0 000 2 2 2 88 5 5 2 2 00 0000 0 333333 0 0 00 0 7 3333333 7 0
consensus : ACACGTATACATATG--ATATCTAATTATATACTATAACAACGGGTGAGTGGACATA----------TATATA---AATATAAAAG-GAG----AAGTTACAAA--ATG-A-T-A-TAATATAATCAC----C-ATTTA-A-------G-------TTA-----------CAAGAA-------AA-------T--ACT---AT-----------------A-C----T----TG-----CAATGCTA--------AACTT-C-----GCATTT--TC-C-A-----GCT-TGT-ACGAGGAAT-TTACCCA-----AATTATT----CAGTTCTTTAGT-ATTNTC--TACACTG-TGA--A-GTTTA-ACCG-TT-CAAATACACCGGGTTTTGTGTAATA-GA-AA--CCCTT-ATATATATTTCTT-TATTAAA-TT-ATATAAA-----------ATGGACA-T-TTCAGAC-TAAAAT-GAAACTCA-CCT-CTAT-------ATCGTTATA-T--AATTTATGA---ATTCC-------TCGCA-TT-CGTTA----A---AAA--GCA-TTGTT-ATG-TCTG-------CCCTTTTCGATATTCNA-AGA--AT-GCGAAG-----------CAGTGA-TA-TTTTT--CCCGTTNAA--CTTGATCGGT-C-TTTTAA------G-A---TAAG---------TATATATTA-AATGT-TGAT---AAAGGGCACTCAATTCAAT-AGTATCATATCAATCGTTCTAAT-TTAACGCGTATTTTTGTGGTTCATTATAA--TTCANCATTCATCCATAATCTACACTGCGTTGTT--T-TAGAAGACTGG-AT-AAACACTGCCTTCTAAATTAATTACGGA-AT-AT-GGATGACATTGNCCGTG
Reference ( family-3564 ) : ACACGTATACATATG--ATATCTAATTATATACTATAACAACGGGTGAGTGGACATA----------TATATA---AATATAAAAG-GAG----AAGTTACAAA--ATG-A-T-A-TAATATAATCAC----C-ATTTA-A-------G-------TTA-----------CAAGAA-------AA-------T--ACT---AT-----------------A-C----T----TG-----CAATGCTA--------AACTT-C-----GCATTT--TC-C-A-----GCT-TGT-ACGAGGAAT-TTACCCA-----AATTATT----NAGTTCTTTAGT-ATTNTC--TANACTG-TGA--A-GTTTA-ACCG-TT-CAAATACACCGGGTTTTGTGCANTA-GA-AA--CCCT--A-ATATATTTCTT-TATTAAA-TT-ATATAAA-----------ACGGACA-T-TTCAGAC-TAAAAT-GAAACTCA-CCT-CTAT-------ATCGTTATA-T--AACTTATGA---ATTCC-------TCGCA-TT-C-TTA----A---AAA--GCA-TTGTT-ATG-TCTG-------CCCTTTTCGATATTCAA-AGA--AC-GCGAAG-----------CAGTGA-TA-TTCTT--CCCGTTNAA--CTTGATTGGT-C-TTTTAA------G-A---TAAG---------TATNTATTA-AATGT-TGAT---AAAGGGCACTCAATTCNATCNGTANCACATCNATCGTTCTAATGTTAACGCGTATTTTTGTGGTTTATTATAA--TTCAGCATTCATCCATAATCTACACTGCNNTGTTNNTATAGAAGACTGGAATAAAACACTGCCNTNTAAATTNNTNACGGACATGATGGGATGACATTGNCCGTG
gi|1 : -ATTGAC--TGGACAGCTGG--A-GTTT--------T-C---TACACCGT-TTTTGTGTAATA-GA-AAACCCCTTTA-ATATATTTCTTCTCTTAAA-TTGATATAAA-----------ATGGACA-T-TTCAGAC-TAAAATTGAAATTCAGCTT-CTATTATCATAATTGTTACA-T--AATTTACGA---ATTCT-------TTGCA-TTGC-CTA----T---AAATTACA-TTGTT-ATGGTCTG-------CCCTTTTCAATATTCAA-GGA--AT-GCGAAGATGTTTTGATCCAGTGATTACTTTTT--CCCCTTCAAGGCTTGATTGGT-C-TTTTAATATTATG-ATTGTAAGCAGAAAGTATATTTATTC-A--GT-TGAT---AAA-GGCACTCAATTC-AT-TGT-TTAC-TCTATCATTCTA---TTAACGCGTA--TTTGTGGTTTATTATAAGTTTCAGCATTCATCCATAATCTAC-TTGCGTTATT----TGAAAGATTGG-AT--AACACTGCTATGTAAATTATTAACGGA----ATGGGATGACATTGGCCGTG
gi|10 : ttcaacttcatacaataagaaattaacaattgaaaattttctacctgtcATACATGTG-----TCTAATTATATACTATAACAACAGGTGAATGGA----------------------------------AAG----AAGTTACAAA--ATG-A-T-A-Ttgcatcagaagtcctgtacgtgggttctgtgttcggtaagatagggacaccgacagaagtgaccatcagatagggacgtgagggcatggagagaacatgcataggagaaacctgtacagatatatagaggatgcgagcatgtatgttaagtggtagctattaggagggattcaggtttaaatcatcagacctacgacctggatgttctggttatgtaaccataaactaataagcgatatctcacaggctaggactttacgatagaacaaaacacacattatactgttggagggacaacgattacaccgcctcggatttgtcaaactacaactgttgacatcaccgtcatgacgactacatcgcatcatcagctgttccaagtcaatgacagagtctatatctccagtttactatggaaaacacaattttggaaacagttaatactgccaagagtttcccagagagtcactagtcacgttccctgtgcttagtgggttttgtcggatctttttgaaatttttgattatggttattgtatgcggggacaacactggcctccattaacacaacc
gi|11 : ttctattctttattgtccttgagttatacaactcatcgaaacataacaaacattcata-------TCA-----------CAGGAA-------AA-------TTTACT---AA-----------------A-C----T----TA-----C----CTA--------CAAT--------GCATTT--TCTC-A-----GCT-TGT-ACGAGAAAT-TTGCCCA-----AATTATTTTAAAAGTTCTCTAGTAATTGTC--TAGACTG-AAA--A-GCTTA-At
gi|12 : TGTT-ATG-TCTGGCAGTAGCCTTTTTCAATATTCAA-AGA--AT-GTGAA----------------GA-TG-TTC---------TGAA--TTT-ATTGATAC-TTTTAA------A-A----A------------ATGTATTA-AATGT-TGATATAAAAAGGCACTCttaatt
gi|13 : ATACAAAC----TATCTAATTGTATACTATAACAGCAGGTGAGTGGACATA----------TA
gi|14 : caattccttattgtccttgagttgtacaactcatcgaaatataacagagAGTGA-TA-TTTTTTTCCCATTCAA--GTTGATTGGT-C-TTTTAA------T-A---TAA----------TAT-TATGATAATATATGAT---TAAG
gi|15 : tttTTAACGCGTATTTTTGTGGTTTATATTAA--TTCAGCATTCATCCATAATCTACACcaga
gi|16 : a-----GCACTTCCTC-C-A-----GCT-TGT-ATGAGGAAC-TTACCTA-----AATTATG----CAGTTCTT
gi|18 : -----GCACTT--CCTC-A-----GCT-TGT-ATGAGGAAC-TTACCTA-----AATTATG----CAGTTCTT
gi|2 : --TT-C-A-----GCTCTGC-ACA--GAAT-T-ACC-A-----AATTATT----AA-TTCTTT-GT-ATTTTTCTTACACTG-TGA--AAGTTTA-ACCA-TTTCAAATACACCGGGTTT-GTGTAATAAGACAA--CCCT--ATATATATTTCTT-TATTAAA-TTTATATAAA------------TGGACAAT-TTCAGACGTAAAAT-GAAA-TCA----------------ATTGT-ATA-T--AA-TTATGACAAATTCT-------T-GCAATT-CGTTA----ATGAAAA--GCAGCTGTTGATG-TCTA-------CCCTTTTCCTCATTCCACAGATCACCGC-AAG------------AGTTA--A-TTCTT--CT-GTTAAA--CTGGATCGGC-CCTTTTAA------GCA---TAAG---------TAAATATTA-AATGT-TGAT---AAAGCGCACTCAATTCAATCAGTAACATATCAAT-GTT-TAATGCTAACGCGTATTATTGTGGTTCA-TA-AA--TT-ATCATTC-TCCATAACCTACACTGCTATGTTGCTATAGAAAACT-GAATAAAACACTGCCTTCTAAATTCATTACAGACATGAT-GGAT-ACATTG
gi|3 : ACAAGTATAAATATG--GTATCTAATTATATACTGTGACAACAGGTGATTGGACATA----------CATATA---AATATAAAAG-GAA----AAGTTACAAA--ATG-A-T-A-TCATATAATCAC----C-ATTTA-A-------G-------TTA-----------CAAGAA-------AA-------T--ACT---AT-----------------A-T----T----TG-----CAGTGCTA--------AACTT-C-----GCATTT--TT-C-A-----GCT-TGT-ACAAGGAAT-TTACCCA-----AATTATT----AAGTTCTTTGGT-ATTTTC--TACACTG-TGA--A-GTTTA-ACCGATT-CAAATACACCGGGTTTTGTGTAATA-GA-AA--CCCTTGATATATATTTCTT-TATTAAATTT-ATATAAA-----------ATGGACA-T-TTCAGAC-TAAAAT-GAAACTCA-TC-------------ATTGTTATA-T--AATTTATGA---ATT-C-------TTGCA-TT-CGTTAATGTA---AAG--GCA-GTGTT-GTG-TCTA-------CCCTTTTCCATATTCCA-AGA--AT-GCGAAG-----------TAGTTA-TA-TTTTT--CCCGTTAAA--CTTGATCGGC-C-TTTTAA------G-A---TAAGT--------TATATATTA-AATGT-TGAT---AAAGGGCACTCAATT-AAT-AGTATCATATCAATTGTTTTAATCTTAACGCGTATTTTTGTGGTTCATTATAA--TTCATCATTCATCCATAATCTACACTGCATTGTTTGT-TAGAA-ACTG--AT-AAACACTGCCTTCTAAATTAATTACAGA-AT----GGATGACATTGCCCGTGcaccctgcatcagacaagtcctgtacgtggttctgtttctgtaaagattagcgacaccacagaagtgcaccattagaagggactaggacatgaaggaaatcgtagataaaacctgtacagttaataagaggaaagagaaagactgtaagtggtagtactaggagggattcagtgtgaatcatcggaccaggacctggatgttctgtcatgtaagtcaaaatctaataagcgaatatcctcacaggccaggccttacgatagaaacaaaacacgccatatacaaatggaggacaatctacaccgcctcggagttgtcaaactacagcttctgacactccagacgaaagcatattgcaccatcacagctgttccgtcaatgacaggtctacatctcgcagttacaacgcaacaacacacatttgaaacattaatgcttctaaaggtgtcagagatcactagtcacggtccctgtgctcaatggttttgtcgatttacttgagatttgatctcatggctatgtcattgctggaacactttgtctccataatacgacc
gi|4 : TGAGTGAACA-A----------GAGATT---AA-ATGAAAA-AAG----AA-TTATAGA---TGTA-C-AATAATGTAATCACATTACGATTTACAC------A-------TTG-----------CAAGAA----------------T--GCT---AT-----------------A-CAATCT----TGATCCACAATGCTA--------AGCTTACATGTAGTATTT--TC-CCA-----GTT-TTT-ACTAAAACT-TTTTTAA-----AATTATT----CAATTCTTTAGT-ATCGTC--TCCGCTA-AGATAA-GT--A-ACGG-CT-T----------GGTTTT-CGCACTA-GA-AA--CCCC--AGATATATTTCTT-------A-TT----TAAGCCCCCCCCCCCACGGA-A-TCTTTAGAA-TAAGTT-GAAACTCA-CCTCCTAT-------ATCATTATAGTCGCACTTAT-A---ATTCCCAAAGCTTCGCA-CT-C-TTG----A---AA----CA-TTGTT-TTG-TCTG--------ACTTTTTGATATT
gi|5 : ACATGTATATATGTACAATATGTA--CATGTACCATAACAACGGGTGAATGGACATAACTATACTAGTATATA---AATATAAGAGAGAGAAAAAAACTACAAA--ATG-A-T-A-TAATTTAAAAAC----C-ATTTC-A-------GTTACACATTA-----------CAAGAA-------AAT------T--ACTTTAATTACAATCTCG-------A-C----T----TA-----CAATGCTT--------AACTT-C-----GCATTT--TCAC-ATAAGTGCG-AGT-ACGAGGAATATT----G-----AATTTCC----CAATT-TTTAGT-ATT
gi|6 : taattcaattttttattgtcctgagttataaaatctttggaatataacaaatacatgatctctaattACACGTATACATA----ATATTTAAT-ATATACTATAACAACAG-TGAGTGGGCATA----------TGTATATATAATATAAAA--GAG----AAGTTACAAAAGATA-A-T-G-T-TTATAATCAA----G-ATTTA-A-------GTTCTAATTTA-----------CAAGAAATTATACAG-------T--ACT---AT-----------------ATC----TGTAGTG-----TAATGATAAAACATGTAACTT-C-----GCATTT--CCTC-A-----GCT-TGTAATGA-GAAT-TT-CTCACTCTCACTTGTT----CAGTT-TTCCCT-ATTCT---TAGTTTA-TGA--G-ACTTATACCtg
gi|7 : cattctctatcgtccttgagggttatatgaatcaaccatcggaaataACATG--ATATCTAAGAAAATATTATAACAACGGGTGAGGGGACATA----------------------ATAAA-G-GAG----AAGATA-GAA--ATC-ACT-A--AATATAATCAC----C-ATTCA-A-------G-------TTATACGTGTTATACAAGAA-------AA-------TC-ACT---ATTAATAGTTACGAGCTTGA-C----T----TT-----TAATGCTT--------AACTT-C-----GCATTT--CCAC-A-----ACT-TGT-AGGCGGAAT-TTACCCATTTATAAT-ATT----AAGTTCTTTAGT-A--------GCAC-----A--A-TTTT----CG-T---AAATACACTCGGTTTTGTGCACTA-GA-AA--CCCT--catt
gi|8 : tattgaacttaagttgtacaactcatcgaaatataacaagtACACGTATACATA----ATATTTAATTATATACTATAACAACAGGTGAGTGGGCATATG--------TATATA---AATATAAAAG-GAG----AAGTTACAAA--ATG-A-TAA-TGTTATAATCAA----G-ATTTA-AGTTACATG-------TTA-----------CAAGAA-------AATATACAGT--ACT---AT-----------------ATC----TG---TG-----TAATGATA--------AA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TAAGTGGGAGTCGAAGAGAGGATTCAAATTTAAAGGATCAGACCTGGGACTTTATGTCCTGGCCTGTTAACCACAAATTAATTTGGTAATTTAATCCAAGGAAGGGATTATGATACCGTGTAAGATATACCTGTGATTTTGATGGAATAATTGTTGAGGACACGCCCTGGGATTTG
Unaligned ( gi|17 ): ATTTCTTGAAATTGATCATGGTTATTGTATTGCGGGGACACACTGGCC
Unaligned ( gi|19 ): ATTCAATTCTTTATTGTCTTGAGTTATACAACTCATTGGAATATAACA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222 4444444444444444444444 111 1111 111111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22222222 1111111 2 11111 22222 11111 11 1111 222222 11 11111 1 2222 555555555555 111 1 1 8888888888888888 1111 111 33333333333 1 33333333333333 11 2222222 2222 6666666666666 11 11 666666666666666666666666 111 111 11 1 1 1 222 11 222 11 1 22 333333
lowQualScore : 0 55555 3 1 0 1111111111111111111111 000 2222 77 5 5 5 999 999999 6 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 00000000 3333333 66 2 4 11111 4 4 0 4 6 4 22222 22222 1 6 3 11 0 5555 8 3 0 111111 0 0 8 8 11 88888 3 0 3 4444 000000000000 2 111 0 0 6 0000000000000000 2 3 4444 3 2 777 44444444444 0 8 99999999999999 00 8 8 6666666 6 1 0 1111 2 2222222222222 888 8 0 11 3 1 11 8 8 000000000000000000000000 444 8 0 8 444 3 44 3 7 7 2 2 666 3 3 3 33 2 1 3 3 333 88 6 2 6 00 0 666666 6 1
lowQualScore : . ..... . . . ...................... ... .... .. . . . ... ...... . .................................................................................................. ........ ....... .. . . ..... . . . . . . ..... ..... . . . .. . .... . . . ...... . . . . .. ..... . . . .... ............ . ... . . . ................ . . .... . . ... ........... . . .............. .. . . ....... . . . .... . ............. ... . . .. . . .. . . ........................ ... . . . ... . .. . . . . . ... . . . .. . . . . ... .. . . . .. . ...... . .
lowQualScore : 2 11111 9 4 1 8888888888888888888888 111 1111 99 7 7 7 444 222222 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 77777777 3333333 11 2 4 11111 4 4 1 4 4 7 22222 33333 7 7 8 00 8 4444 0 8 8 555555 8 6 0 0 00 88888 2 0 2 0000 888888888888 5 000 0 0 5 0000000000000000 0 2 8888 2 5 555 55555555555 0 8 22222222222222 88 0 0 0000000 4 0 8 2222 5 8888888888888 888 0 8 00 2 0 00 0 0 888888888888888888888888 888 0 8 0 000 2 00 3 3 3 0 0 333 2 2 2 88 5 0 2 2 333 33 7 0 7 77 7 333333 7 0
consensus : ACACGTATACATATG--ATATCTAATTATATACTATAACAACGGGTGAGTGGACATA----------TATATA---AATATAAAAG-GAG----AAGTTACAAA--ATG-A-T-A-TAATATAATCAC----C-ATTTA-A-------G-------TTA-----------CAAGAA-------AA-------T--ACT---AT-----------------A-C----T----TG-----CAATGCTA--------AACTT-C-----GCATTT--TC-C-A-----GCT-TGT-ACGAGGAAT-TTACCCA-----AATTATTC----AGTTCTTTAGT-ATTNTC--TACACTGNG--AA-GTTTAACCG-TT-CAAATACACCGGGTTTTGTGTAATA-GA-AA--CCCTT-ANATATATTTCTT-TATTAAA-TT-ATATAAA-----------ATGGACA-T-TTCAGAC-TAAAA-TGAAACTCA-CCT-CTAT-------ATCGTTATA-T--AATTTATGA---ATTCC-------TCGCA-TTCGTTA----A---AAA--GCA-TTGTT-AT-GTCTG-------CCCTTTTCGATATTCNAAGAAT----GCGAAG-----------CAGTGA-TA-TTTTT--CCCGTTNAA--CTTGATCGGT-C-TTTTAA------G-AT----------AAG-TATA--TATTA-AATGT-TGAT---AAAGGGCACTCAATTCAAT-AGTATCATATCAATCGTTCTAAT-TTAACGCGTATTTTTGTGGTTCATTATAA--TTCANCATTCATCCATAATCTACACTGC---GTTGTT--TTAGAAGACTGGAT-AAACACTGCCTTCTAAATTAATTACGGA-AT-ATGGATGACATTGNCCGTG
Reference ( family-3564 ) : ACACGTATACATATG--ATATCTAATTATATACTATAACAACGGGTGAGTGGACATA----------TATATA---AATATAAAAG-GAG----AAGTTACAAA--ATG-A-T-A-TAATATAATCAC----C-ATTTA-A-------G-------TTA-----------CAAGAA-------AA-------T--ACT---AT-----------------A-C----T----TG-----CAATGCTA--------AACTT-C-----GCATTT--TC-C-A-----GCT-TGT-ACGAGGAAT-TTACCCA-----AATTATTC----AGTTCTTTAGT-ATTNTC--TACACTGTG--AA-GTTTAACCG-TT-CAAATACACCGGGTTTTGTGTAATA-GA-AA--CCCTT-ATATATATTTCTT-TATTAAA-TT-ATATAAA-----------ATGGACA-T-TTCAGAC-TAAAA-TGAAACTCA-CCT-CTAT-------ATCGTTATA-T--AATTTATGA---ATTCC-------TCGCA-TTCGTTA----A---AAA--GCA-TTGTT-AT-GTCTG-------CCCTTTTCGATATTCNAAGAAT----GCGAAG-----------CAGTGA-TA-TTTTT--CCCGTTNAA--CTTGATCGGT-C-TTTTAA------G-AT----------AAG-TATA--TATTA-AATGT-TGAT---AAAGGGCACTCAATTCAAT-AGTATCATATCAATCGTTCTAAT-TTAACGCGTATTTTTGTGGTTCATTATAA--TTCANCATTCATCCATAATCTACACTGC---GTTGTT--TTAGAAGACTGGAT-AAACACTGCCTTCTAAATTAATTACGGA-AT-ATGGATGACATTGNCCGTG
gi|1 : TACACCGT-TTTTGTGTAATA-GA-AAACCCCTT-TAATATATTTCTTCTCTTAAA-TTGATATAAA-----------ATGGACA-T-TTCAGAC-TAAAATTGAAATTCAGCTT-CTATTATCATAATTGTTACA-T--AATTTACGA---ATTCT-------TTGCA-TTGCCTA----T---AAATTACA-TTGTT-ATGGTCTG-------CCCTTTTCAATATTCAAGGAAT----GCGAAGATGTTTTGATCCAGTGATTACTTTTT--CCCCTTCAAGGCTTGATTGGT-C-TTTTAATATTATG-ATTGTAAGCAGAAAG-TATATTTATTC-A--GT-TGAT---AAA-GGCACTCAATTC-AT-TGT-TTAC-TCTATCATTCTA---TTAACGCGTA--TTTGTGGTTTATTATAAGTTTCAGCATTCATCCATAATCTAC-TTGC---GTTATT--TGA-AAGATTGGAT--AACACTGCTATGTAAATTATTAACGGA-AT-G-GGATGACATTGGCCGTG
gi|10 : ttcaacttcatacaataagaaattaacaattgaaaattttctacctgtcattgactggacagctggagttttcATACATGTG-----TCTAATTATATACTATAACAACAGGTGAATGGA----------------------------------AAG----AAGTTACAAA--ATG-A-T-A-Ttgcatcagaagtcctgtacgtgggttctgtgttcggtaagatagggacaccgacagaagtgaccatcagatagggacgtgagggcatggagagaacatgcataggagaaacctgtacagatatatagaggatgcgagcatgtatgttaagtggtagctattaggagggattcaggtttaaatcatcagacctacgacctggatgttctggttatgtaaccataaactaataagcgatatctcacaggctaggactttacgatagaacaaaacacacattatactgttggagggacaacgattacaccgcctcggatttgtcaaactacaactgttgacatcaccgtcatgacgactacatcgcatcatcagctgttccaagtcaatgacagagtctatatctccagtttactatggaaaacacaattttggaaacagttaatactgccaagagtttcccagagagtcactagtcacgttccctgtgcttagtgggttttgtcggatctttttgaaatttttgattatggttattgtatgcggggacaacactggcctccattaacacaacc
gi|11 : ttctattctttattgtccttgagttatacaactcatcgaaacataacaaacattcata-------TCA-----------CAGGAA-------AA-------TTTACT---AA-----------------A-C----T----TA-----C----CTA--------CAAT--------GCATTT--TCTC-A-----GCT-TGT-ACGAGAAAT-TTGCCCA-----AATTATTTTAAAAGTTCTCTAGTAATTGTC--TAGACTGAA--AA-GCTTAAt
gi|12 : TGTT-AT-GTCTGGCAGTAGCCTTTTTCAATATTCAAAGAAT----GTGAA----------------GA-TG-TT---------CTGAA--TTT-ATTGATAC-TTTTAA------A-A-----------A----ATG--TATTA-AATGT-TGATATAAAAAGGCACTCttaatt
gi|13 : ATACAAAC----TATCTAATTGTATACTATAACAGCAGGTGAGTGGACATA----------TA
gi|14 : caattccttattgtccttgagttgtacaactcatcgaaatataacagagAGTGA-TA-TTTTTTTCCCATTCAA--GTTGATTGGT-C-TTTTAA------T-AT----------AA--TAT---TATGATAATATATGAT---TAAG
gi|15 : ttt-TTAACGCGTATTTTTGTGGTTTATATTAA--TTCAGCATTCATCCATAATCTACACcaga
gi|16 : a-----GCACTTCCTC-C-A-----GCT-TGT-ATGAGGAAC-TTACCTA-----AATTATGC----AGTTCTT
gi|18 : -----GCACTT--CCTC-A-----GCT-TGT-ATGAGGAAC-TTACCTA-----AATTATGC----AGTTCTT
gi|2 : --TT-C-A-----GCTCTGC-ACA--GAAT-T-ACC-A-----AATTATT-----AATTCTTT-GT-ATTTTTCTTACACTGTG--AAAGTTTAACCA-TTTCAAATACACCGGGTTT-GTGTAATAAGACAA--CCCT--ATATATATTTCTT-TATTAAA-TTTATATAAA------------TGGACAAT-TTCAGACGTAAAA-TGAAA-TCA----------------ATTGT-ATA-T--AATT-ATGACAAATTCT-------T-GCAATTCGTTA----ATGAAAA--GCAGCTGTTGAT-GTCTA-------CCCTTTTCCTCATTCCACAGATCACCGC-AAG------------AGT---TA-ATTCT--TCTGTTAAA--CTGGATCGGC-CCTTTTAA------GCAT----------AAG-TAAA--TATTA-AATGT-TGAT---AAAGCGCACTCAATTCAATCAGTAACATATCAAT-GTT-TAATGCTAACGCGTATTATTGTGGTTCA-TA-AA--TT-ATCATTC-TCCATAACCTACACTGCTATGTTGCT--ATAGAAAACTGAATAAAACACTGCCTTCTAAATTCATTACAGACATGATGGAT-ACATTG
gi|3 : ACAAGTATAAATATG--GTATCTAATTATATACTGTGACAACAGGTGATTGGACATA----------CATATA---AATATAAAAG-GAA----AAGTTACAAA--ATG-A-T-A-TCATATAATCAC----C-ATTTA-A-------G-------TTA-----------CAAGAA-------AA-------T--ACT---AT-----------------A-T----T----TG-----CAGTGCTA--------AACTT-C-----GCATTT--TT-C-A-----GCT-TGT-ACAAGGAAT-TTACCCA-----AATTATTA----AGTTCTTTGGT-ATTTTC--TACACTGTG--AA-GTTTAACCGATT-CAAATACACCGGGTTTTGTGTAATA-GA-AA--CCCTTGATATATATTTCTT-TATTAAATTT-ATATAAA-----------ATGGACA-T-TTCAGAC-TAAAA-TGAAACTCA-TC-------------ATTGTTATA-T--AATTTATGA---ATT-C-------TTGCA-TTCGTTAATGTA---AAG--GCA-GTGTT-GT-GTCTA-------CCCTTTTCCATATTCCAAGAAT----GCGAAG-----------TAGTTA-TA-TTTTT--CCCGTTAAA--CTTGATCGGC-C-TTTTAA------G-AT----------AAGTTATA--TATTA-AATGT-TGAT---AAAGGGCACTCAATT-AAT-AGTATCATATCAATTGTTTTAATCTTAACGCGTATTTTTGTGGTTCATTATAA--TTCATCATTCATCCATAATCTACACTGC---ATTGTTTGTTAGAA-ACT-GAT-AAACACTGCCTTCTAAATTAATTACAGA----ATGGATGACATTGCCCGTGcaccctgcatcagacaagtcctgtacgtggttctgtttctgtaaagattagcgacaccacagaagtgcaccattagaagggactaggacatgaaggaaatcgtagataaaacctgtacagttaataagaggaaagagaaagactgtaagtggtagtactaggagggattcagtgtgaatcatcggaccaggacctggatgttctgtcatgtaagtcaaaatctaataagcgaatatcctcacaggccaggccttacgatagaaacaaaacacgccatatacaaatggaggacaatctacaccgcctcggagttgtcaaactacagcttctgacactccagacgaaagcatattgcaccatcacagctgttccgtcaatgacaggtctacatctcgcagttacaacgcaacaacacacatttgaaacattaatgcttctaaaggtgtcagagatcactagtcacggtccctgtgctcaatggttttgtcgatttacttgagatttgatctcatggctatgtcattgctggaacactttgtctccataatacgacc
gi|4 : TGAGTGAACA-A----------GAGATT---AA-ATGAAAA-AAG----AA-TTATAGA---TGTA-C-AATAATGTAATCACATTACGATTTACAC------A-------TTG-----------CAAGAA----------------T--GCT---AT-----------------A-CAATCT----TGATCCACAATGCTA--------AGCTTACATGTAGTATTT--TC-CCA-----GTT-TTT-ACTAAAACT-TTTTTAA-----AATTATTC----AATTCTTTAGT-ATCGTC--TCCGCTAAGATAA-G--TAACGG-CT-T----------GGTTTT-CGCACTA-GA-AA--CCC-C-AGATATATTTC-T-TATT----------TAAGCCCCCCCCCCCACGGA-A-TCTTTAGAA-TAAGT-TGAAACTCA-CCTCCTAT-------ATCATTATAGTCGCACTTAT-A---ATTCCCAAAGCTTCGCA-CTC-TTG----A---AA----CA-TTGTT-TT-GTCTG--------ACTTTTTGATATT
gi|5 : ACATGTATATATGTACAATATGTA--CATGTACCATAACAACGGGTGAATGGACATAACTATACTAGTATATA---AATATAAGAGAGAGAAAAAAACTACAAA--ATG-A-T-A-TAATTTAAAAAC----C-ATTTC-A-------GTTACACATTA-----------CAAGAA-------AAT------T--ACTTTAATTACAATCTCG-------A-C----T----TA-----CAATGCTT--------AACTT-C-----GCATTT--TCAC-ATAAGTGCG-AGT-ACGAGGAATATT----G-----AATTTCCC----AATT-TTTAGT-ATT
gi|6 : taattcaattttttattgtcctgagttataaaatctttggaatataacaaatacatgatctctaattACACGTATACATA----ATATTTAAT-ATATACTATAACAACAG-TGAGTGGGCATA----------TGTATATATAATATAAAA--GAG----AAGTTACAAAAGATA-A-T-G-T-TTATAATCAA----G-ATTTA-A-------GTTCTAATTTA-----------CAAGAAATTATACAG-------T--ACT---AT-----------------ATC----TGTAGTG-----TAATGATAAAACATGTAACTT-C-----GCATTT--CCTC-A-----GCT-TGTAATGA-GAAT-TT-CTCACTCTCACTTGTTC----AGTTTTtg
gi|7 : cattctctatcgtccttgagggttatatgaatcaaccatcggaaataACATG--ATATCTAAGAAAATATTATAACAACGGGTGAGGGGACATA----------------------ATAAA-G-GAG----AAGATA-GAA--ATC-ACT-A--AATATAATCAC----C-ATTCA-A-------G-------TTATACGTGTTATACAAGAA-------AA-------TC-ACT---ATTAATAGTTACGAGCTTGA-C----T----TT-----TAATGCTT--------AACTT-C-----GCATTT--CCAC-A-----ACT-TGT-AGGCGGAAT-TTACCCATTTATAAT-ATTA----AGTTCTTTAGT-A--------GCAC------AA-TTTT---CG-T---AAATACACTCGGTTTTGTGCACTA-GA-AA--CCCTccctattcttagtttatgagacttatacccatt
gi|8 : tattgaacttaagttgtacaactcatcgaaatataacaagtACACGTATACATA----ATATTTAATTATATACTATAACAACAGGTGAGTGGGCATATG--------TATATA---AATATAAAAG-GAG----AAGTTACAAA--ATG-A-TAA-TGTTATAATCAA----G-ATTTA-AGTTACATG-------TTA-----------CAAGAA-------AATATACAGT--ACT---AT-----------------ATC----TG---TG-----TAATGATA--------AA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TAAGTGGGAGTCGAAGAGAGGATTCAAATTTAAAGGATCAGACCTGGGACTTTATGTCCTGGCCTGTTAACCACAAATTAATTTGGTAATTTAATCCAAGGAAGGGATTATGATACCGTGTAAGATATACCTGTGATTTTGATGGAATAATTGTTGAGGACACGCCCTGGGATTTG
Unaligned ( gi|17 ): ATTTCTTGAAATTGATCATGGTTATTGTATTGCGGGGACACACTGGCC
Unaligned ( gi|19 ): ATTCAATTCTTTATTGTCTTGAGTTATACAACTCATTGGAATATAACA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222 4444444444444444444444 111 1111 111111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22222222 1111111 2 11111 22222 11111 11 1111 222222 11 111 1 2222 555555555555 111 1 1 8888888888888888 1111 111 33333333333 1 33333333333333 11 2222222 2222 6666666666666 11 11 666666666666666666666666 111 111 11 1 1 1 222 11 222 11 1 22 333333
lowQualScore : 0 55555 3 1 0 1111111111111111111111 000 2222 77 5 5 5 999 999999 6 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 00000000 3333333 66 2 4 11111 4 4 0 4 6 4 22222 22222 1 6 3 11 0 3333 8 3 0 111111 0 0 8 8 11 777 1 3 0 3 4444 000000000000 2 111 0 0 6 0000000000000000 2 3 4444 3 2 777 44444444444 0 8 99999999999999 00 8 8 6666666 6 1 0 1111 2 2222222222222 888 8 0 11 3 1 11 8 8 000000000000000000000000 444 8 0 8 444 3 44 3 7 7 2 2 666 3 3 3 33 2 1 3 3 333 88 6 2 6 00 0 666666 6 1
lowQualScore : . ..... . . . ...................... ... .... .. . . . ... ...... . .................................................................................................. ........ ....... .. . . ..... . . . . . . ..... ..... . . . .. . .... . . . ...... . . . . .. ... . . . . .... ............ . ... . . . ................ . . .... . . ... ........... . . .............. .. . . ....... . . . .... . ............. ... . . .. . . .. . . ........................ ... . . . ... . .. . . . . . ... . . . .. . . . . ... .. . . . .. . ...... . .
lowQualScore : 2 11111 9 4 1 8888888888888888888888 111 1111 99 7 7 7 444 222222 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 77777777 3333333 11 2 4 11111 4 4 1 4 4 7 22222 33333 7 7 8 00 8 0000 0 8 8 555555 8 6 0 0 00 888 0 2 0 2 0000 888888888888 5 000 0 0 5 0000000000000000 0 2 8888 2 5 555 55555555555 0 8 22222222222222 88 0 0 0000000 4 0 8 2222 5 8888888888888 888 0 8 00 2 0 00 0 0 888888888888888888888888 888 0 8 0 000 2 00 3 3 3 0 0 333 2 2 2 88 5 0 2 2 333 33 7 0 7 77 7 333333 7 0
consensus : ACACGTATACATATG--ATATCTAATTATATACTATAACAACGGGTGAGTGGACATA----------TATATA---AATATAAAAG-GAG----AAGTTACAAA--ATG-A-T-A-TAATATAATCAC----C-ATTTA-A-------G-------TTA-----------CAAGAA-------AA-------T--ACT---AT-----------------A-C----T----TG-----CAATGCTA--------AACTT-C-----GCATTT--TC-C-A-----GCT-TGT-ACGAGGAAT-TTACCCA-----AATTATTC----AGTTCTTTAGT-ATTNTC--TACACTGNG--AA-GTTTAACCG-TT-CAAATACACCGGGTTTTGTGTAATA-GA-AA--CCCTT-ANATATATTTCTT-TATTAAA-TT-ATATAAA-----------ATGGACA-T-TTCAGAC-TAAAAT-GAAACTCA-CCT-CTAT-------ATCGTTATA-T--AATTTATGA---ATTCC-------TCGCA-TTCGTTA----A---AAA--GCA-TTGTT-ATG-TCTG-------CCCTTTTCGATATTCNAAGAAT----GCGAAG-----------CAGTGA-TA-TTTTT--CCCGTTNAA--CTTGATCGGT-C-TTTTAA------G-AT----------AAG-TATA--TATTA-AATGT-TGAT---AAAGGGCACTCAATTCAAT-AGTATCATATCAATCGTTCTAAT-TTAACGCGTATTTTTGTGGTTCATTATAA--TTCANCATTCATCCATAATCTACACTGC---GTTGTT--TTAGAAGACTGGAT-AAACACTGCCTTCTAAATTAATTACGGA-AT-ATGGATGACATTGNCCGTG
Reference ( family-3564 ) : ACACGTATACATATG--ATATCTAATTATATACTATAACAACGGGTGAGTGGACATA----------TATATA---AATATAAAAG-GAG----AAGTTACAAA--ATG-A-T-A-TAATATAATCAC----C-ATTTA-A-------G-------TTA-----------CAAGAA-------AA-------T--ACT---AT-----------------A-C----T----TG-----CAATGCTA--------AACTT-C-----GCATTT--TC-C-A-----GCT-TGT-ACGAGGAAT-TTACCCA-----AATTATTC----AGTTCTTTAGT-ATTNTC--TACACTGNG--AA-GTTTAACCG-TT-CAAATACACCGGGTTTTGTGTAATA-GA-AA--CCCTT-ANATATATTTCTT-TATTAAA-TT-ATATAAA-----------ATGGACA-T-TTCAGAC-TAAAAT-GAAACTCA-CCT-CTAT-------ATCGTTATA-T--AATTTATGA---ATTCC-------TCGCA-TTCGTTA----A---AAA--GCA-TTGTT-ATG-TCTG-------CCCTTTTCGATATTCNAAGAAT----GCGAAG-----------CAGTGA-TA-TTTTT--CCCGTTNAA--CTTGATCGGT-C-TTTTAA------G-AT----------AAG-TATA--TATTA-AATGT-TGAT---AAAGGGCACTCAATTCAAT-AGTATCATATCAATCGTTCTAAT-TTAACGCGTATTTTTGTGGTTCATTATAA--TTCANCATTCATCCATAATCTACACTGC---GTTGTT--TTAGAAGACTGGAT-AAACACTGCCTTCTAAATTAATTACGGA-AT-ATGGATGACATTGNCCGTG
gi|1 : TACACCGT-TTTTGTGTAATA-GA-AAACCCCTT-TAATATATTTCTTCTCTTAAA-TTGATATAAA-----------ATGGACA-T-TTCAGAC-TAAAATTGAAATTCAGCTT-CTATTATCATAATTGTTACA-T--AATTTACGA---ATTCT-------TTGCA-TTGCCTA----T---AAATTACA-TTGTT-ATGGTCTG-------CCCTTTTCAATATTCAAGGAAT----GCGAAGATGTTTTGATCCAGTGATTACTTTTT--CCCCTTCAAGGCTTGATTGGT-C-TTTTAATATTATG-ATTGTAAGCAGAAAG-TATATTTATTC-A--GT-TGAT---AAA-GGCACTCAATTC-AT-TGT-TTAC-TCTATCATTCTA---TTAACGCGTA--TTTGTGGTTTATTATAAGTTTCAGCATTCATCCATAATCTAC-TTGC---GTTATT--TGA-AAGATTGGAT--AACACTGCTATGTAAATTATTAACGGA-AT-G-GGATGACATTGGCCGTG
gi|10 : ttcaacttcatacaataagaaattaacaattgaaaattttctacctgtcattgactggacagctggagttttcATACATGTG-----TCTAATTATATACTATAACAACAGGTGAATGGA----------------------------------AAG----AAGTTACAAA--ATG-A-T-A-Ttgcatcagaagtcctgtacgtgggttctgtgttcggtaagatagggacaccgacagaagtgaccatcagatagggacgtgagggcatggagagaacatgcataggagaaacctgtacagatatatagaggatgcgagcatgtatgttaagtggtagctattaggagggattcaggtttaaatcatcagacctacgacctggatgttctggttatgtaaccataaactaataagcgatatctcacaggctaggactttacgatagaacaaaacacacattatactgttggagggacaacgattacaccgcctcggatttgtcaaactacaactgttgacatcaccgtcatgacgactacatcgcatcatcagctgttccaagtcaatgacagagtctatatctccagtttactatggaaaacacaattttggaaacagttaatactgccaagagtttcccagagagtcactagtcacgttccctgtgcttagtgggttttgtcggatctttttgaaatttttgattatggttattgtatgcggggacaacactggcctccattaacacaacc
gi|11 : ttctattctttattgtccttgagttatacaactcatcgaaacataacaaacattcata-------TCA-----------CAGGAA-------AA-------TTTACT---AA-----------------A-C----T----TA-----C----CTA--------CAAT--------GCATTT--TCTC-A-----GCT-TGT-ACGAGAAAT-TTGCCCA-----AATTATTTTAAAAGTTCTCTAGTAATTGTC--TAGACTGAA--AA-GCTTAAt
gi|12 : TGTT-ATG-TCTGGCAGTAGCCTTTTTCAATATTCAAAGAAT----GTGAA----------------GA-TG-TT---------CTGAA--TTT-ATTGATAC-TTTTAA------A-A-----------A----ATG--TATTA-AATGT-TGATATAAAAAGGCACTCttaatt
gi|13 : ATACAAAC----TATCTAATTGTATACTATAACAGCAGGTGAGTGGACATA----------TA
gi|14 : caattccttattgtccttgagttgtacaactcatcgaaatataacagagAGTGA-TA-TTTTTTTCCCATTCAA--GTTGATTGGT-C-TTTTAA------T-AT----------AA--TAT---TATGATAATATATGAT---TAAG
gi|15 : ttt-TTAACGCGTATTTTTGTGGTTTATATTAA--TTCAGCATTCATCCATAATCTACACcaga
gi|16 : a-----GCACTTCCTC-C-A-----GCT-TGT-ATGAGGAAC-TTACCTA-----AATTATGC----AGTTCTT
gi|18 : -----GCACTT--CCTC-A-----GCT-TGT-ATGAGGAAC-TTACCTA-----AATTATGC----AGTTCTT
gi|2 : --TT-C-A-----GCTCTGC-ACA--GAAT-T-ACC-A-----AATTATT-----AATTCTTT-GT-ATTTTTCTTACACTGTG--AAAGTTTAACCA-TTTCAAATACACCGGGTTT-GTGTAATAAGACAA--CCCT--ATATATATTTCTT-TATTAAA-TTTATATAAA------------TGGACAAT-TTCAGACGTAAAAT-GAAA-TCA----------------ATTGT-ATA-T--AATT-ATGACAAATTCT-------T-GCAATTCGTTA----ATGAAAA--GCAGCTGTTGATG-TCTA-------CCCTTTTCCTCATTCCACAGATCACCGC-AAG------------AGT---TA-ATTCT--TCTGTTAAA--CTGGATCGGC-CCTTTTAA------GCAT----------AAG-TAAA--TATTA-AATGT-TGAT---AAAGCGCACTCAATTCAATCAGTAACATATCAAT-GTT-TAATGCTAACGCGTATTATTGTGGTTCA-TA-AA--TT-ATCATTC-TCCATAACCTACACTGCTATGTTGCT--ATAGAAAACTGAATAAAACACTGCCTTCTAAATTCATTACAGACATGATGGAT-ACATTG
gi|3 : ACAAGTATAAATATG--GTATCTAATTATATACTGTGACAACAGGTGATTGGACATA----------CATATA---AATATAAAAG-GAA----AAGTTACAAA--ATG-A-T-A-TCATATAATCAC----C-ATTTA-A-------G-------TTA-----------CAAGAA-------AA-------T--ACT---AT-----------------A-T----T----TG-----CAGTGCTA--------AACTT-C-----GCATTT--TT-C-A-----GCT-TGT-ACAAGGAAT-TTACCCA-----AATTATTA----AGTTCTTTGGT-ATTTTC--TACACTGTG--AA-GTTTAACCGATT-CAAATACACCGGGTTTTGTGTAATA-GA-AA--CCCTTGATATATATTTCTT-TATTAAATTT-ATATAAA-----------ATGGACA-T-TTCAGAC-TAAAAT-GAAACTCA-TC-------------ATTGTTATA-T--AATTTATGA---ATT-C-------TTGCA-TTCGTTAATGTA---AAG--GCA-GTGTT-GTG-TCTA-------CCCTTTTCCATATTCCAAGAAT----GCGAAG-----------TAGTTA-TA-TTTTT--CCCGTTAAA--CTTGATCGGC-C-TTTTAA------G-AT----------AAGTTATA--TATTA-AATGT-TGAT---AAAGGGCACTCAATT-AAT-AGTATCATATCAATTGTTTTAATCTTAACGCGTATTTTTGTGGTTCATTATAA--TTCATCATTCATCCATAATCTACACTGC---ATTGTTTGTTAGAA-ACT-GAT-AAACACTGCCTTCTAAATTAATTACAGA----ATGGATGACATTGCCCGTGcaccctgcatcagacaagtcctgtacgtggttctgtttctgtaaagattagcgacaccacagaagtgcaccattagaagggactaggacatgaaggaaatcgtagataaaacctgtacagttaataagaggaaagagaaagactgtaagtggtagtactaggagggattcagtgtgaatcatcggaccaggacctggatgttctgtcatgtaagtcaaaatctaataagcgaatatcctcacaggccaggccttacgatagaaacaaaacacgccatatacaaatggaggacaatctacaccgcctcggagttgtcaaactacagcttctgacactccagacgaaagcatattgcaccatcacagctgttccgtcaatgacaggtctacatctcgcagttacaacgcaacaacacacatttgaaacattaatgcttctaaaggtgtcagagatcactagtcacggtccctgtgctcaatggttttgtcgatttacttgagatttgatctcatggctatgtcattgctggaacactttgtctccataatacgacc
gi|4 : TGAGTGAACA-A----------GAGATT---AA-ATGAAAA-AAG----AA-TTATAGA---TGTA-C-AATAATGTAATCACATTACGATTTACAC------A-------TTG-----------CAAGAA----------------T--GCT---AT-----------------A-CAATCT----TGATCCACAATGCTA--------AGCTTACATGTAGTATTT--TC-CCA-----GTT-TTT-ACTAAAACT-TTTTTAA-----AATTATTC----AATTCTTTAGT-ATCGTC--TCCGCTAAGATAA-G--TAACGG-CT-T----------GGTTTT-CGCACTA-GA-AA--CCC-C-AGATATATTTC-T-TATT----------TAAGCCCCCCCCCCCACGGA-A-TCTTTAGAA-TAAGTT-GAAACTCA-CCTCCTAT-------ATCATTATAGTCGCACTTAT-A---ATTCCCAAAGCTTCGCA-CTC-TTG----A---AA----CA-TTGTT-TTG-TCTG--------ACTTTTTGATATT
gi|5 : ACATGTATATATGTACAATATGTA--CATGTACCATAACAACGGGTGAATGGACATAACTATACTAGTATATA---AATATAAGAGAGAGAAAAAAACTACAAA--ATG-A-T-A-TAATTTAAAAAC----C-ATTTC-A-------GTTACACATTA-----------CAAGAA-------AAT------T--ACTTTAATTACAATCTCG-------A-C----T----TA-----CAATGCTT--------AACTT-C-----GCATTT--TCAC-ATAAGTGCG-AGT-ACGAGGAATATT----G-----AATTTCCC----AATT-TTTAGT-ATT
gi|6 : taattcaattttttattgtcctgagttataaaatctttggaatataacaaatacatgatctctaattACACGTATACATA----ATATTTAAT-ATATACTATAACAACAG-TGAGTGGGCATA----------TGTATATATAATATAAAA--GAG----AAGTTACAAAAGATA-A-T-G-T-TTATAATCAA----G-ATTTA-A-------GTTCTAATTTA-----------CAAGAAATTATACAG-------T--ACT---AT-----------------ATC----TGTAGTG-----TAATGATAAAACATGTAACTT-C-----GCATTT--CCTC-A-----GCT-TGTAATGA-GAAT-TT-CTCACTCTCACTTGTTC----AGTTTTtg
gi|7 : cattctctatcgtccttgagggttatatgaatcaaccatcggaaataACATG--ATATCTAAGAAAATATTATAACAACGGGTGAGGGGACATA----------------------ATAAA-G-GAG----AAGATA-GAA--ATC-ACT-A--AATATAATCAC----C-ATTCA-A-------G-------TTATACGTGTTATACAAGAA-------AA-------TC-ACT---ATTAATAGTTACGAGCTTGA-C----T----TT-----TAATGCTT--------AACTT-C-----GCATTT--CCAC-A-----ACT-TGT-AGGCGGAAT-TTACCCATTTATAAT-ATTA----AGTTCTTTAGT-A--------GCAC------AA-TTTT---CG-T---AAATACACTCGGTTTTGTGCACTA-GA-AA--CCCTccctattcttagtttatgagacttatacccatt
gi|8 : tattgaacttaagttgtacaactcatcgaaatataacaagtACACGTATACATA----ATATTTAATTATATACTATAACAACAGGTGAGTGGGCATATG--------TATATA---AATATAAAAG-GAG----AAGTTACAAA--ATG-A-TAA-TGTTATAATCAA----G-ATTTA-AGTTACATG-------TTA-----------CAAGAA-------AATATACAGT--ACT---AT-----------------ATC----TG---TG-----TAATGATA--------AA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TAAGTGGGAGTCGAAGAGAGGATTCAAATTTAAAGGATCAGACCTGGGACTTTATGTCCTGGCCTGTTAACCACAAATTAATTTGGTAATTTAATCCAAGGAAGGGATTATGATACCGTGTAAGATATACCTGTGATTTTGATGGAATAATTGTTGAGGACACGCCCTGGGATTTG
Unaligned ( gi|17 ): ATTTCTTGAAATTGATCATGGTTATTGTATTGCGGGGACACACTGGCC
Unaligned ( gi|19 ): ATTCAATTCTTTATTGTCTTGAGTTATACAACTCATTGGAATATAACA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222 4444444444444444444444 111 1111 111111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22222222 1111111 2 11111 22222 11111 11 1111 222222 11 111 1 2222 555555555555 111 1 1 8888888888888888 1111 111 33333333333 1 33333333333333 11 2222222 2222 6666666666666 11 11 666666666666666666666666 111 111 11 1 1 1 222 11 222 11 1 22 333333
lowQualScore : 0 55555 3 1 0 1111111111111111111111 000 2222 77 5 5 5 999 999999 6 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 00000000 3333333 66 2 4 11111 4 4 0 4 6 4 22222 22222 1 6 3 11 0 3333 8 3 0 111111 0 0 8 8 11 777 1 3 0 3 4444 000000000000 2 111 0 0 6 0000000000000000 2 3 4444 3 2 777 44444444444 0 8 99999999999999 00 8 8 6666666 6 1 0 1111 2 2222222222222 888 8 0 11 3 1 11 8 8 000000000000000000000000 444 8 0 8 444 3 44 3 7 7 2 2 666 3 3 3 33 2 1 3 3 333 88 6 2 6 00 0 666666 6 1
lowQualScore : . ..... . . . ...................... ... .... .. . . . ... ...... . .................................................................................................. ........ ....... .. . . ..... . . . . . . ..... ..... . . . .. . .... . . . ...... . . . . .. ... . . . . .... ............ . ... . . . ................ . . .... . . ... ........... . . .............. .. . . ....... . . . .... . ............. ... . . .. . . .. . . ........................ ... . . . ... . .. . . . . . ... . . . .. . . . . ... .. . . . .. . ...... . .
lowQualScore : 2 11111 9 4 1 8888888888888888888888 111 1111 99 7 7 7 444 222222 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 77777777 3333333 11 2 4 11111 4 4 1 4 4 7 22222 33333 7 7 8 00 8 0000 0 8 8 555555 8 6 0 0 00 888 0 2 0 2 0000 888888888888 5 000 0 0 5 0000000000000000 0 2 8888 2 5 555 55555555555 0 8 22222222222222 88 0 0 0000000 4 0 8 2222 5 8888888888888 888 0 8 00 2 0 00 0 0 888888888888888888888888 888 0 8 0 000 2 00 3 3 3 0 0 333 2 2 2 88 5 0 2 2 333 33 7 0 7 77 7 333333 7 0
consensus : ACACGTATACATATG--ATATCTAATTATATACTATAACAACGGGTGAGTGGACATA----------TATATA---AATATAAAAG-GAG----AAGTTACAAA--ATG-A-T-A-TAATATAATCAC----C-ATTTA-A-------G-------TTA-----------CAAGAA-------AA-------T--ACT---AT-----------------A-C----T----TG-----CAATGCTA--------AACTT-C-----GCATTT--TC-C-A-----GCT-TGT-ACGAGGAAT-TTACCCA-----AATTATTC----AGTTCTTTAGT-ATTNTC--TACACTGNG--AA-GTTTAACCG-TT-CAAATACACCGGGTTTTGTGTAATA-GA-AA--CCCTT-ANATATATTTCTT-TATTAAA-TT-ATATAAA-----------ATGGACA-T-TTCAGAC-TAAAAT-GAAACTCA-CCT-CTAT-------ATCGTTATA-T--AATTTATGA---ATTCC-------TCGCA-TTCGTTA----A---AAA--GCA-TTGTT-ATG-TCTG-------CCCTTTTCGATATTCNAAGAAT----GCGAAG-----------CAGTGA-TA-TTTTT--CCCGTTNAA--CTTGATCGGT-C-TTTTAA------G-AT----------AAG-TATA--TATTA-AATGT-TGAT---AAAGGGCACTCAATTCAAT-AGTATCATATCAATCGTTCTAAT-TTAACGCGTATTTTTGTGGTTCATTATAA--TTCANCATTCATCCATAATCTACACTGC---GTTGTT--TTAGAAGACTGGAT-AAACACTGCCTTCTAAATTAATTACGGA-AT-ATGGATGACATTGNCCGTG
Reference ( family-3564 ) : ACACGTATACATATG--ATATCTAATTATATACTATAACAACGGGTGAGTGGACATA----------TATATA---AATATAAAAG-GAG----AAGTTACAAA--ATG-A-T-A-TAATATAATCAC----C-ATTTA-A-------G-------TTA-----------CAAGAA-------AA-------T--ACT---AT-----------------A-C----T----TG-----CAATGCTA--------AACTT-C-----GCATTT--TC-C-A-----GCT-TGT-ACGAGGAAT-TTACCCA-----AATTATTC----AGTTCTTTAGT-ATTNTC--TACACTGNG--AA-GTTTAACCG-TT-CAAATACACCGGGTTTTGTGTAATA-GA-AA--CCCTT-ANATATATTTCTT-TATTAAA-TT-ATATAAA-----------ATGGACA-T-TTCAGAC-TAAAAT-GAAACTCA-CCT-CTAT-------ATCGTTATA-T--AATTTATGA---ATTCC-------TCGCA-TTCGTTA----A---AAA--GCA-TTGTT-ATG-TCTG-------CCCTTTTCGATATTCNAAGAAT----GCGAAG-----------CAGTGA-TA-TTTTT--CCCGTTNAA--CTTGATCGGT-C-TTTTAA------G-AT----------AAG-TATA--TATTA-AATGT-TGAT---AAAGGGCACTCAATTCAAT-AGTATCATATCAATCGTTCTAAT-TTAACGCGTATTTTTGTGGTTCATTATAA--TTCANCATTCATCCATAATCTACACTGC---GTTGTT--TTAGAAGACTGGAT-AAACACTGCCTTCTAAATTAATTACGGA-AT-ATGGATGACATTGNCCGTG
gi|1 : TACACCGT-TTTTGTGTAATA-GA-AAACCCCTT-TAATATATTTCTTCTCTTAAA-TTGATATAAA-----------ATGGACA-T-TTCAGAC-TAAAATTGAAATTCAGCTT-CTATTATCATAATTGTTACA-T--AATTTACGA---ATTCT-------TTGCA-TTGCCTA----T---AAATTACA-TTGTT-ATGGTCTG-------CCCTTTTCAATATTCAAGGAAT----GCGAAGATGTTTTGATCCAGTGATTACTTTTT--CCCCTTCAAGGCTTGATTGGT-C-TTTTAATATTATG-ATTGTAAGCAGAAAG-TATATTTATTC-A--GT-TGAT---AAA-GGCACTCAATTC-AT-TGT-TTAC-TCTATCATTCTA---TTAACGCGTA--TTTGTGGTTTATTATAAGTTTCAGCATTCATCCATAATCTAC-TTGC---GTTATT--TGA-AAGATTGGAT--AACACTGCTATGTAAATTATTAACGGA-AT-G-GGATGACATTGGCCGTG
gi|10 : ttcaacttcatacaataagaaattaacaattgaaaattttctacctgtcattgactggacagctggagttttcATACATGTG-----TCTAATTATATACTATAACAACAGGTGAATGGA----------------------------------AAG----AAGTTACAAA--ATG-A-T-A-Ttgcatcagaagtcctgtacgtgggttctgtgttcggtaagatagggacaccgacagaagtgaccatcagatagggacgtgagggcatggagagaacatgcataggagaaacctgtacagatatatagaggatgcgagcatgtatgttaagtggtagctattaggagggattcaggtttaaatcatcagacctacgacctggatgttctggttatgtaaccataaactaataagcgatatctcacaggctaggactttacgatagaacaaaacacacattatactgttggagggacaacgattacaccgcctcggatttgtcaaactacaactgttgacatcaccgtcatgacgactacatcgcatcatcagctgttccaagtcaatgacagagtctatatctccagtttactatggaaaacacaattttggaaacagttaatactgccaagagtttcccagagagtcactagtcacgttccctgtgcttagtgggttttgtcggatctttttgaaatttttgattatggttattgtatgcggggacaacactggcctccattaacacaacc
gi|11 : ttctattctttattgtccttgagttatacaactcatcgaaacataacaaacattcata-------TCA-----------CAGGAA-------AA-------TTTACT---AA-----------------A-C----T----TA-----C----CTA--------CAAT--------GCATTT--TCTC-A-----GCT-TGT-ACGAGAAAT-TTGCCCA-----AATTATTTTAAAAGTTCTCTAGTAATTGTC--TAGACTGAA--AA-GCTTAAt
gi|12 : TGTT-ATG-TCTGGCAGTAGCCTTTTTCAATATTCAAAGAAT----GTGAA----------------GA-TG-TT---------CTGAA--TTT-ATTGATAC-TTTTAA------A-A-----------A----ATG--TATTA-AATGT-TGATATAAAAAGGCACTCttaatt
gi|13 : ATACAAAC----TATCTAATTGTATACTATAACAGCAGGTGAGTGGACATA----------TA
gi|14 : caattccttattgtccttgagttgtacaactcatcgaaatataacagagAGTGA-TA-TTTTTTTCCCATTCAA--GTTGATTGGT-C-TTTTAA------T-AT----------AA--TAT---TATGATAATATATGAT---TAAG
gi|15 : ttt-TTAACGCGTATTTTTGTGGTTTATATTAA--TTCAGCATTCATCCATAATCTACACcaga
gi|16 : a-----GCACTTCCTC-C-A-----GCT-TGT-ATGAGGAAC-TTACCTA-----AATTATGC----AGTTCTT
gi|18 : -----GCACTT--CCTC-A-----GCT-TGT-ATGAGGAAC-TTACCTA-----AATTATGC----AGTTCTT
gi|2 : --TT-C-A-----GCTCTGC-ACA--GAAT-T-ACC-A-----AATTATT-----AATTCTTT-GT-ATTTTTCTTACACTGTG--AAAGTTTAACCA-TTTCAAATACACCGGGTTT-GTGTAATAAGACAA--CCCT--ATATATATTTCTT-TATTAAA-TTTATATAAA------------TGGACAAT-TTCAGACGTAAAAT-GAAA-TCA----------------ATTGT-ATA-T--AATT-ATGACAAATTCT-------T-GCAATTCGTTA----ATGAAAA--GCAGCTGTTGATG-TCTA-------CCCTTTTCCTCATTCCACAGATCACCGC-AAG------------AGT---TA-ATTCT--TCTGTTAAA--CTGGATCGGC-CCTTTTAA------GCAT----------AAG-TAAA--TATTA-AATGT-TGAT---AAAGCGCACTCAATTCAATCAGTAACATATCAAT-GTT-TAATGCTAACGCGTATTATTGTGGTTCA-TA-AA--TT-ATCATTC-TCCATAACCTACACTGCTATGTTGCT--ATAGAAAACTGAATAAAACACTGCCTTCTAAATTCATTACAGACATGATGGAT-ACATTG
gi|3 : ACAAGTATAAATATG--GTATCTAATTATATACTGTGACAACAGGTGATTGGACATA----------CATATA---AATATAAAAG-GAA----AAGTTACAAA--ATG-A-T-A-TCATATAATCAC----C-ATTTA-A-------G-------TTA-----------CAAGAA-------AA-------T--ACT---AT-----------------A-T----T----TG-----CAGTGCTA--------AACTT-C-----GCATTT--TT-C-A-----GCT-TGT-ACAAGGAAT-TTACCCA-----AATTATTA----AGTTCTTTGGT-ATTTTC--TACACTGTG--AA-GTTTAACCGATT-CAAATACACCGGGTTTTGTGTAATA-GA-AA--CCCTTGATATATATTTCTT-TATTAAATTT-ATATAAA-----------ATGGACA-T-TTCAGAC-TAAAAT-GAAACTCA-TC-------------ATTGTTATA-T--AATTTATGA---ATT-C-------TTGCA-TTCGTTAATGTA---AAG--GCA-GTGTT-GTG-TCTA-------CCCTTTTCCATATTCCAAGAAT----GCGAAG-----------TAGTTA-TA-TTTTT--CCCGTTAAA--CTTGATCGGC-C-TTTTAA------G-AT----------AAGTTATA--TATTA-AATGT-TGAT---AAAGGGCACTCAATT-AAT-AGTATCATATCAATTGTTTTAATCTTAACGCGTATTTTTGTGGTTCATTATAA--TTCATCATTCATCCATAATCTACACTGC---ATTGTTTGTTAGAA-ACT-GAT-AAACACTGCCTTCTAAATTAATTACAGA----ATGGATGACATTGCCCGTGcaccctgcatcagacaagtcctgtacgtggttctgtttctgtaaagattagcgacaccacagaagtgcaccattagaagggactaggacatgaaggaaatcgtagataaaacctgtacagttaataagaggaaagagaaagactgtaagtggtagtactaggagggattcagtgtgaatcatcggaccaggacctggatgttctgtcatgtaagtcaaaatctaataagcgaatatcctcacaggccaggccttacgatagaaacaaaacacgccatatacaaatggaggacaatctacaccgcctcggagttgtcaaactacagcttctgacactccagacgaaagcatattgcaccatcacagctgttccgtcaatgacaggtctacatctcgcagttacaacgcaacaacacacatttgaaacattaatgcttctaaaggtgtcagagatcactagtcacggtccctgtgctcaatggttttgtcgatttacttgagatttgatctcatggctatgtcattgctggaacactttgtctccataatacgacc
gi|4 : TGAGTGAACA-A----------GAGATT---AA-ATGAAAA-AAG----AA-TTATAGA---TGTA-C-AATAATGTAATCACATTACGATTTACAC------A-------TTG-----------CAAGAA----------------T--GCT---AT-----------------A-CAATCT----TGATCCACAATGCTA--------AGCTTACATGTAGTATTT--TC-CCA-----GTT-TTT-ACTAAAACT-TTTTTAA-----AATTATTC----AATTCTTTAGT-ATCGTC--TCCGCTAAGATAA-G--TAACGG-CT-T----------GGTTTT-CGCACTA-GA-AA--CCC-C-AGATATATTTC-T-TATT----------TAAGCCCCCCCCCCCACGGA-A-TCTTTAGAA-TAAGTT-GAAACTCA-CCTCCTAT-------ATCATTATAGTCGCACTTAT-A---ATTCCCAAAGCTTCGCA-CTC-TTG----A---AA----CA-TTGTT-TTG-TCTG--------ACTTTTTGATATT
gi|5 : ACATGTATATATGTACAATATGTA--CATGTACCATAACAACGGGTGAATGGACATAACTATACTAGTATATA---AATATAAGAGAGAGAAAAAAACTACAAA--ATG-A-T-A-TAATTTAAAAAC----C-ATTTC-A-------GTTACACATTA-----------CAAGAA-------AAT------T--ACTTTAATTACAATCTCG-------A-C----T----TA-----CAATGCTT--------AACTT-C-----GCATTT--TCAC-ATAAGTGCG-AGT-ACGAGGAATATT----G-----AATTTCCC----AATT-TTTAGT-ATT
gi|6 : taattcaattttttattgtcctgagttataaaatctttggaatataacaaatacatgatctctaattACACGTATACATA----ATATTTAAT-ATATACTATAACAACAG-TGAGTGGGCATA----------TGTATATATAATATAAAA--GAG----AAGTTACAAAAGATA-A-T-G-T-TTATAATCAA----G-ATTTA-A-------GTTCTAATTTA-----------CAAGAAATTATACAG-------T--ACT---AT-----------------ATC----TGTAGTG-----TAATGATAAAACATGTAACTT-C-----GCATTT--CCTC-A-----GCT-TGTAATGA-GAAT-TT-CTCACTCTCACTTGTTC----AGTTTTtg
gi|7 : cattctctatcgtccttgagggttatatgaatcaaccatcggaaataACATG--ATATCTAAGAAAATATTATAACAACGGGTGAGGGGACATA----------------------ATAAA-G-GAG----AAGATA-GAA--ATC-ACT-A--AATATAATCAC----C-ATTCA-A-------G-------TTATACGTGTTATACAAGAA-------AA-------TC-ACT---ATTAATAGTTACGAGCTTGA-C----T----TT-----TAATGCTT--------AACTT-C-----GCATTT--CCAC-A-----ACT-TGT-AGGCGGAAT-TTACCCATTTATAAT-ATTA----AGTTCTTTAGT-A--------GCAC------AA-TTTT---CG-T---AAATACACTCGGTTTTGTGCACTA-GA-AA--CCCTccctattcttagtttatgagacttatacccatt
gi|8 : tattgaacttaagttgtacaactcatcgaaatataacaagtACACGTATACATA----ATATTTAATTATATACTATAACAACAGGTGAGTGGGCATATG--------TATATA---AATATAAAAG-GAG----AAGTTACAAA--ATG-A-TAA-TGTTATAATCAA----G-ATTTA-AGTTACATG-------TTA-----------CAAGAA-------AATATACAGT--ACT---AT-----------------ATC----TG---TG-----TAATGATA--------AA
blockSeqs : TACAA T A ACTATACTAGTATATAAAT AGA AAAA AG T C A ATA ATTACG C GTTATACGTGTTATACAAGAAAATCACTATTAATAGTTACGAGCTTGACTTT AAACATGT ACATGTA CC T C TAAGT C A A A T CTCTC C G . T CT AGAT A T ATTCA A C . TTG T T . A TTT CCCCCCCCCCCA C AT G . C CCTCCTAT T T GTCG T G CAA CCCAAAGCTTC A G ATGTAAAGG GC G . GCAGTAG A A CACC G GT GA . TT A G . A C GCATAAG G T A ATA A CA C A A T T ATG T T T . C G A A TAT TG G A G AA CATGAT G C
blockSeqs : TGG T A TGTATATATAAT AG . . . . . TA C . GTTACACATTACAAGAAAATTACTTTAATTACAATCTCGACTTA . C . A . . . . . A T TTTAT C A . T . TG . T CTT . . . T T T . A TTT A C TC . . C TC T T T T G . CTT . G ATGAAAAG G . . . C C . G G GA . . G C . . . GATAAGT A . . . G A . A A . . ATC T T T . C T A A . . G . . A AT .
blockSeqs : TGA C G TGTATATAAAT AA . . . . . TG G . GTTCTAATTTACAAGAAATTATACAGTACTATATCTGTAGTG . C . T . . . . . A C . A A . G . TG . T TA . . . C G . . . . . . T . . . . C . T . . . CTT . . AAA T . . . C C . . . TA . . G A . . . TATAA A . . . G T . . . . T . A
blockSeqs : C A A CATATAAAT AG . . . . . T C . GTTACATGTTACAAGAAAATATACAGTACTATATCTGTG . C . A . . . . . A A . C A . . . . . . . . . . . . G . . . . A . . . AAA . . . . G
blockSeqs : A T G GAGATTAA A . . . . . A G . CATTGCAAGAATGCTATACAATCTTGATCCA . C . . . . . . . T C . C . .
blockSeqs : A . A . G . . . . . . . . . . . . . A C . C
blockSeqs : . . . . . . . . . . A
blockSeqs : . . . . . . . . . . .
blockSeqCons : TA*** AG* C****** C**** ** GA* ** ATAAG******************* A**
originalCons : ACACGTATACATATG--ATATCTAATTATATACTATAACAACGGGTGAGTGGACATA----------TATATA---AATATAAAAG-GAG----AAGTTACAAA--ATG-A-T-A-TAATATAATCAC----C-ATTTA-A-------G-------TTA-----------CAAGAA-------AA-------T--ACT---AT-----------------A-C----T----TG-----CAATGCTA--------AACTT-C-----GCATTT--TC-C-A-----GCT-TGT-ACGAGGAAT-TTACCCA-----AATTATTC----AGTTCTTTAGT-ATTNTC--TACACTGNG--AA-GTTTAACCG-TT-CAAATACACCGGGTTTTGTGTAATA-GA-AA--CCCTT-ANATATATTTCTT-TATTAAA-TT-ATATAAA-----------ATGGACA-T-TTCAGAC-TAAAAT-GAAACTCA-CCT-CTAT-------ATCGTTATA-T--AATTTATGA---ATTCC-------TCGCA-TTCGTTA----A---AAA--GCA-TTGTT-ATG-TCTG-------CCCTTTTCGATATTCNAAGAAT----GCGAAG-----------CAGTGA-TA-TTTTT--CCCGTTNAA--CTTGATCGGT-C-TTTTAA------G-AT----------AAG-TATA--TATTA-AATGT-TGAT---AAAGGGCACTCAATTCAAT-AGTATCATATCAATCGTTCTAAT-TTAACGCGTATTTTTGTGGTTCATTATAA--TTCANCATTCATCCATAATCTACACTGC---GTTGTT--TTAGAAGACTGGAT-AAACACTGCCTTCTAAATTAATTACGGA-AT-ATGGATGACATTGNCCGTG
finalCons : ACACGTATACATATA---TATCTAATTATATACTATAACAACGGGTGAGTGGACATA----------TATATA---AATATAAAAG-GAG----AAGTTACAAA--ATG-A-T-A-TAATATAATCAC----C-ATTTA-A-------G-------TTA-----------CAAGAA-------AA-------T--ACT---AT-----------------A-C----T----TG-----CAATGCTA--------AACTTC------GCATTT--TC-C-A-----GCT-TGT-ACGAGGAAT-TTACCCA-----AATTATTC----AGTTCTTTAGT-ATTNTC--TACACTGNG--AA-GTTTAACCG-TT-CAAATACACCGGGTTTTGTGTAATA-GA-AA--CCCTT-ANATATATTTCTT-TATTAAA-TT-ATATAAA-----------ATGGACA-T-TTCAGAC-TAAAAT-GAAACTCA-CCT-CTAT-------ATCGTTATA-T--AATTTATGA---ATTCC-------TCGCA-TTCGTTA----A---AAA--GCA-TTGTT-ATG-TCTG-------CCCTTTTCGATATTCNAAGAAT----GCGAAG-----------CAGTGA-TA-TTTTT--CCCGTTNAA--CTTGATCGGT-C-TTTTAAATAAG-------------------TATA--TATTA-AATGT-TGAT---AAAGGGCACTCAATTCAAT-AGTATCATATCAATCGTTCTAAT-TTAACGCGTATTTTTGTGGTTCATTATAA--TTCANCATTCATCCATAATCTACACTGC---GTTGTT--TTAGAAGACTGGAT-AAACACTGCCTTCTAAATTAATTACGGA-AT-ATGGATGACATTGNCCGTG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TAAGTGGGAGTCGAAGAGAGGATTCAAATTTAAAGGATCAGACCTGGGACTTTATGTCCTGGCCTGTTAACCACAAATTAATTTGGTAATTTAATCCAAGGAAGGGATTATGATACCGTGTAAGATATACCTGTGATTTTGATGGAATAATTGTTGAGGACACGCCCTGGGATTTG
Unaligned ( gi|17 ): ATTTCTTGAAATTGATCATGGTTATTGTATTGCGGGGACACACTGGCC
Unaligned ( gi|19 ): ATTCAATTCTTTATTGTCTTGAGTTATACAACTCATTGGAATATAACA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333 4444444444444444444444 111 1111 111111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22222222 1111111 2 11111 22222 11111 11 1111 222222 11 111 1 2222 555555555555 111 1 1 8888888888888888 1111 111 33333333333 1 33333333333333 11 2222222 2222 6666666666666 11 11 66666666666666666666666 11 111 11 1 1 1 222 11 222 11 1 22 333333
lowQualScore : 0 22222 3 1 0 1111111111111111111111 000 2222 77 5 5 5 999 999999 6 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 00000000 3333333 66 2 4 11111 4 4 0 4 6 4 22222 22222 1 6 3 11 0 3333 8 3 0 111111 0 0 8 8 11 777 1 3 0 3 4444 000000000000 2 111 0 0 6 0000000000000000 2 3 4444 3 2 777 44444444444 0 8 99999999999999 00 8 8 6666666 6 1 0 1111 2 2222222222222 888 8 0 11 3 1 11 8 8 66666666666666666666666 3 8 11 8 444 3 44 3 7 7 2 2 666 3 3 3 33 2 1 3 3 333 88 6 2 6 00 0 666666 6 1
lowQualScore : . ..... . . . ...................... ... .... .. . . . ... ...... . .................................................................................................. ........ ....... .. . . ..... . . . . . . ..... ..... . . . .. . .... . . . ...... . . . . .. ... . . . . .... ............ . ... . . . ................ . . .... . . ... ........... . . .............. .. . . ....... . . . .... . ............. ... . . .. . . .. . . ....................... . . .. . ... . .. . . . . . ... . . . .. . . . . ... .. . . . .. . ...... . .
lowQualScore : 2 11111 9 4 1 8888888888888888888888 111 1111 99 7 7 7 444 222222 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 77777777 3333333 11 2 4 11111 4 4 1 4 4 7 22222 33333 7 7 8 00 8 0000 0 8 8 555555 8 6 0 0 00 888 0 2 0 2 0000 888888888888 5 000 0 0 5 0000000000000000 0 2 8888 2 5 555 55555555555 0 8 22222222222222 88 0 0 0000000 4 0 8 2222 5 8888888888888 888 0 8 00 2 0 00 0 0 66666666666666666666666 8 0 00 0 000 2 00 3 3 3 0 0 333 2 2 2 88 5 0 2 2 333 33 7 0 7 77 7 333333 7 0
consensus : ACACGTATACATGTA---TATCTAATTATATACTATAACAACGGGTGAGTGGACATA----------TATATA---AATATAAAAG-GAGAAG----TTACAAA--ATG-A-T-A-TAATATAATCAC----C-ATTTA-A-------G-------TTA-----------CAAGAA-------AA-------T--ACT---AT-----------------A-C----T----TG-----CAATGCTA--------AACTT-C-----GCATTT--TC-C-A-----GCT-TGT-ACGAGGAAT-TTACCCA-----AATTATTC----AGTTCTTTAGT-ATTNTC--TACACTGNG--AA-GTTTAACCG-TT-CAAATACACCGGGTTTTGTGTAATA-GA-AA--CCCTT-ANATATATTTCTT-TATTAAA-TT-ATATAAA-----------ATGGACA-T-TTCAGAC-TAAAA-TGAAACTCA-CCT-CTAT-------ATCGTTATA-T--AATTTATGA---ATTCC-------TCGCA-TTCGTTA----A---AAA--GCA-TTGTT-AT-GTCTG-------CCCTTTTCGATATTCNAAGAAT----GCGAAG-----------CAGTGA-TA-TTTTT--CCCGTTNAA--CTTGATCGGT-C-TTTTAAN---------ATAAG-TA-----TATATTA-AAT--GT-TGAT---AAAGGGCACTCAATTCAAT-AGTATCATATCAATCGTTCTAAT-TTAACGCGTATTTTTGTGGTTCATTATAA--TTCANCATTCATCCATAATCTACACTGC---GTTGTT--TTAGAAGACTGGAT-AAACACTGCCTTCTAAATTAATTACGGA-AT-ATGGATGACATTGNCCGTG
Reference ( family-3564 ) : ACACGTATACATATA---TATCTAATTATATACTATAACAACGGGTGAGTGGACATA----------TATATA---AATATAAAAG-GAGAAG----TTACAAA--ATG-A-T-A-TAATATAATCAC----C-ATTTA-A-------G-------TTA-----------CAAGAA-------AA-------T--ACT---AT-----------------A-C----T----TG-----CAATGCTA--------AACTT-C-----GCATTT--TC-C-A-----GCT-TGT-ACGAGGAAT-TTACCCA-----AATTATTC----AGTTCTTTAGT-ATTNTC--TACACTGNG--AA-GTTTAACCG-TT-CAAATACACCGGGTTTTGTGTAATA-GA-AA--CCCTT-ANATATATTTCTT-TATTAAA-TT-ATATAAA-----------ATGGACA-T-TTCAGAC-TAAAA-TGAAACTCA-CCT-CTAT-------ATCGTTATA-T--AATTTATGA---ATTCC-------TCGCA-TTCGTTA----A---AAA--GCA-TTGTT-AT-GTCTG-------CCCTTTTCGATATTCNAAGAAT----GCGAAG-----------CAGTGA-TA-TTTTT--CCCGTTNAA--CTTGATCGGT-C-TTTTAA----------ATAAG-TA-----TATATTA-AAT--GT-TGAT---AAAGGGCACTCAATTCAAT-AGTATCATATCAATCGTTCTAAT-TTAACGCGTATTTTTGTGGTTCATTATAA--TTCANCATTCATCCATAATCTACACTGC---GTTGTT--TTAGAAGACTGGAT-AAACACTGCCTTCTAAATTAATTACGGA-AT-ATGGATGACATTGNCCGTG
gi|1 : TACACCGT-TTTTGTGTAATA-GA-AAACCCCTT-TAATATATTTCTTCTCTTAAA-TTGATATAAA-----------ATGGACA-T-TTCAGAC-TAAAATTGAAATTCAGCTT-CTATTATCATAATTGTTACA-T--AATTTACGA---ATTCT-------TTGCA-TTGCCTA----T---AAATTACA-TTGTT-ATGGTCTG-------CCCTTTTCAATATTCAAGGAAT----GCGAAGATGTTTTGATCCAGTGATTACTTTTT--CCCCTTCAAGGCTTGATTGGT-C-TTTTAATATTATGATTGTAAG-CAGAAAGTATATTT-ATTCAGT-TGAT---AAA-GGCACTCAATTC-AT-TGT-TTAC-TCTATCATTCTA---TTAACGCGTA--TTTGTGGTTTATTATAAGTTTCAGCATTCATCCATAATCTAC-TTGC---GTTATT--TGA-AAGATTGGAT--AACACTGCTATGTAAATTATTAACGGA-AT-G-GGATGACATTGGCCGTG
gi|10 : ttcaacttcatacaataagaaattaacaattgaaaattttctacctgtcattgactggacagctggagttttcATACATGTG---T--CTAATTATATACTATAACAACAGGTGAATGGA----------------------------------AAGAAG----TTACAAA--ATG-A-T-A-Ttgcatcagaagtcctgtacgtgggttctgtgttcggtaagatagggacaccgacagaagtgaccatcagatagggacgtgagggcatggagagaacatgcataggagaaacctgtacagatatatagaggatgcgagcatgtatgttaagtggtagctattaggagggattcaggtttaaatcatcagacctacgacctggatgttctggttatgtaaccataaactaataagcgatatctcacaggctaggactttacgatagaacaaaacacacattatactgttggagggacaacgattacaccgcctcggatttgtcaaactacaactgttgacatcaccgtcatgacgactacatcgcatcatcagctgttccaagtcaatgacagagtctatatctccagtttactatggaaaacacaattttggaaacagttaatactgccaagagtttcccagagagtcactagtcacgttccctgtgcttagtgggttttgtcggatctttttgaaatttttgattatggttattgtatgcggggacaacactggcctccattaacacaacc
gi|11 : ttctattctttattgtccttgagttatacaactcatcgaaacataacaaacattcata-------TCA-----------CAGGAA-------AA-------TTTACT---AA-----------------A-C----T----TA-----C----CTA--------CAAT--------GCATTT--TCTC-A-----GCT-TGT-ACGAGAAAT-TTGCCCA-----AATTATTTTAAAAGTTCTCTAGTAATTGTC--TAGACTGAA--AA-GCTTAAt
gi|12 : TGTT-AT-GTCTGGCAGTAGCCTTTTTCAATATTCAAAGAAT----GTGAA----------------GA-TG-TT---------CTGAA--TTT-ATTGATAC-TTTTAA----------A-AA---A-----TGTATTA-AAT--GT-TGATATAAAAAGGCACTCttaatt
gi|13 : ATACAAAC----TATCTAATTGTATACTATAACAGCAGGTGAGTGGACATA----------TA
gi|14 : caattccttattgtccttgagttgtacaactcatcgaaatataacagagAGTGA-TA-TTTTTTTCCCATTCAA--GTTGATTGGT-C-TTTTAAT---------ATAA--TA-----T-TATGATAAT--ATATGAT---TAAG
gi|15 : ttt-TTAACGCGTATTTTTGTGGTTTATATTAA--TTCAGCATTCATCCATAATCTACACcaga
gi|16 : a-----GCACTTCCTC-C-A-----GCT-TGT-ATGAGGAAC-TTACCTA-----AATTATGC----AGTTCTT
gi|18 : -----GCACTT--CCTC-A-----GCT-TGT-ATGAGGAAC-TTACCTA-----AATTATGC----AGTTCTT
gi|2 : --TT-C-A-----GCTCTGC-ACA--GAAT-T-ACC-A-----AATTATT-----AATTCTTT-GT-ATTTTTCTTACACTGTG--AAAGTTTAACCA-TTTCAAATACACCGGGTTT-GTGTAATAAGACAA--CCCT--ATATATATTTCTT-TATTAAA-TTTATATAAA------------TGGACAAT-TTCAGACGTAAAA-TGAAA-TCA----------------ATTGT-ATA-T--AATT-ATGACAAATTCT-------T-GCAATTCGTTA----ATGAAAA--GCAGCTGTTGAT-GTCTA-------CCCTTTTCCTCATTCCACAGATCACCGC-AAG------------AGT---TA-ATTCT--TCTGTTAAA--CTGGATCGGC-CCTTTTAAGC--------ATAAG-TA-----AATATTA-AAT--GT-TGAT---AAAGCGCACTCAATTCAATCAGTAACATATCAAT-GTT-TAATGCTAACGCGTATTATTGTGGTTCA-TA-AA--TT-ATCATTC-TCCATAACCTACACTGCTATGTTGCT--ATAGAAAACTGAATAAAACACTGCCTTCTAAATTCATTACAGACATGATGGAT-ACATTG
gi|3 : ACAAGTATAAATATGG--TATCTAATTATATACTGTGACAACAGGTGATTGGACATA----------CATATA---AATATAAAAG-GAAAAG----TTACAAA--ATG-A-T-A-TCATATAATCAC----C-ATTTA-A-------G-------TTA-----------CAAGAA-------AA-------T--ACT---AT-----------------A-T----T----TG-----CAGTGCTA--------AACTT-C-----GCATTT--TT-C-A-----GCT-TGT-ACAAGGAAT-TTACCCA-----AATTATTA----AGTTCTTTGGT-ATTTTC--TACACTGTG--AA-GTTTAACCGATT-CAAATACACCGGGTTTTGTGTAATA-GA-AA--CCCTTGATATATATTTCTT-TATTAAATTT-ATATAAA-----------ATGGACA-T-TTCAGAC-TAAAA-TGAAACTCA-TC-------------ATTGTTATA-T--AATTTATGA---ATT-C-------TTGCA-TTCGTTAATGTA---AAG--GCA-GTGTT-GT-GTCTA-------CCCTTTTCCATATTCCAAGAAT----GCGAAG-----------TAGTTA-TA-TTTTT--CCCGTTAAA--CTTGATCGGC-C-TTTTAAG---------ATAAGTTA-----TATATTA-AAT--GT-TGAT---AAAGGGCACTCAATT-AAT-AGTATCATATCAATTGTTTTAATCTTAACGCGTATTTTTGTGGTTCATTATAA--TTCATCATTCATCCATAATCTACACTGC---ATTGTTTGTTAGAA-ACT-GAT-AAACACTGCCTTCTAAATTAATTACAGA----ATGGATGACATTGCCCGTGcaccctgcatcagacaagtcctgtacgtggttctgtttctgtaaagattagcgacaccacagaagtgcaccattagaagggactaggacatgaaggaaatcgtagataaaacctgtacagttaataagaggaaagagaaagactgtaagtggtagtactaggagggattcagtgtgaatcatcggaccaggacctggatgttctgtcatgtaagtcaaaatctaataagcgaatatcctcacaggccaggccttacgatagaaacaaaacacgccatatacaaatggaggacaatctacaccgcctcggagttgtcaaactacagcttctgacactccagacgaaagcatattgcaccatcacagctgttccgtcaatgacaggtctacatctcgcagttacaacgcaacaacacacatttgaaacattaatgcttctaaaggtgtcagagatcactagtcacggtccctgtgctcaatggttttgtcgatttacttgagatttgatctcatggctatgtcattgctggaacactttgtctccataatacgacc
gi|4 : TGAGTGAACA-A----------GAGATT---AA-ATGAAAA-AAGAA-----TTATAGA---TGTA-C-AATAATGTAATCACATTACGATTTACAC------A-------TTG-----------CAAGAA----------------T--GCT---AT-----------------A-CAATCT----TGATCCACAATGCTA--------AGCTTACATGTAGTATTT--TC-CCA-----GTT-TTT-ACTAAAACT-TTTTTAA-----AATTATTC----AATTCTTTAGT-ATCGTC--TCCGCTAAGATAA-G--TAACGG-CT-T----------GGTTTT-CGCACTA-GA-AA--CCC-C-AGATATATTTC-T-TATT----------TAAGCCCCCCCCCCCACGGA-A-TCTTTAGAA-TAAGT-TGAAACTCA-CCTCCTAT-------ATCATTATAGTCGCACTTAT-A---ATTCCCAAAGCTTCGCA-CTC-TTG----A---AA----CA-TTGTT-TT-GTCTG--------ACTTTTTGATATT
gi|5 : ACATGTATATATGTACAATATGTA--CATGTACCATAACAACGGGTGAATGGACATAACTATACTAGTATATA---AATATAAGAGAGAGAAAAAAACTACAAA--ATG-A-T-A-TAATTTAAAAAC----C-ATTTC-A-------GTTACACATTA-----------CAAGAA-------AAT------T--ACTTTAATTACAATCTCG-------A-C----T----TA-----CAATGCTT--------AACTT-C-----GCATTT--TCAC-ATAAGTGCG-AGT-ACGAGGAATATT----G-----AATTTCCC----AATT-TTTAGT-ATT
gi|6 : taattcaattttttattgtcctgagttataaaatctttggaatataacaaatacatgatctctaattACACGTATACATA-A---TATTTAAT-ATATACTATAACAACAG-TGAGTGGGCATA----------TGTATATATAATATAAAA--GAGAAG----TTACAAAAGATA-A-T-G-T-TTATAATCAA----G-ATTTA-A-------GTTCTAATTTA-----------CAAGAAATTATACAG-------T--ACT---AT-----------------ATC----TGTAGTG-----TAATGATAAAACATGTAACTT-C-----GCATTT--CCTC-A-----GCT-TGTAATGA-GAAT-TT-CTCACTCTCACTTGTTC----AGTTTTtg
gi|7 : cattctctatcgtccttgagggttatatgaatcaaccatcggaaataTACATG-A---TATCTAAGAAAATATTATAACAACGGGTGAGGGGACATA----------------------ATAAA-G-GAGAAG----ATA-GAA--ATC-ACT-A--AATATAATCAC----C-ATTCA-A-------G-------TTATACGTGTTATACAAGAA-------AA-------TC-ACT---ATTAATAGTTACGAGCTTGA-C----T----TT-----TAATGCTT--------AACTT-C-----GCATTT--CCAC-A-----ACT-TGT-AGGCGGAAT-TTACCCATTTATAAT-ATTA----AGTTCTTTAGT-A--------GCAC------AA-TTTT---CG-T---AAATACACTCGGTTTTGTGCACTA-GA-AA--CCCTccctattcttagtttatgagacttatacccatt
gi|8 : tattgaacttaagttgtacaactcatcgaaatataacaagACACGTATACATA-A---TATTTAATTATATACTATAACAACAGGTGAGTGGGCATATG--------TATATA---AATATAAAAG-GAGAAG----TTACAAA--ATG-A-TAA-TGTTATAATCAA----G-ATTTA-AGTTACATG-------TTA-----------CAAGAA-------AATATACAGT--ACT---AT-----------------ATC----TG---TG-----TAATGATA--------AA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TAAGTGGGAGTCGAAGAGAGGATTCAAATTTAAAGGATCAGACCTGGGACTTTATGTCCTGGCCTGTTAACCACAAATTAATTTGGTAATTTAATCCAAGGAAGGGATTATGATACCGTGTAAGATATACCTGTGATTTTGATGGAATAATTGTTGAGGACACGCCCTGGGATTTG
Unaligned ( gi|17 ): ATTTCTTGAAATTGATCATGGTTATTGTATTGCGGGGACACACTGGCC
Unaligned ( gi|19 ): ATTCAATTCTTTATTGTCTTGAGTTATACAACTCATTGGAATATAACA