lowQualScore : 111111111111111111111111111111 11111111111111111111111111111111111
lowQualScore : 222 1 222222222222222222222222222222 1 222222 11 44444444444444444444444444444444444 444444444444444 1 111111 222222 1 1 1 4 1 66666666666666666 11 22
lowQualScore : 888 5 4 999999999999999999999999999999 6 2 6 9 6 4 5 1 444444 88 6 66666666666666666666666666666666666 888888888888888 0 3 1 4 6 1 6 55 3 999999 2 000000 2 666 6 5 6 6 6 6 6 5 7 0 6 6 6 2 5 4 00000000000000000 6 88 77 6 6
lowQualScore : ... . . .............................. . . . . . . . . ...... .. . ................................... ............... . . . . . . . .. . ...... . ...... . ... . . . . . . . . . . . . . . . . ................. . .. .. . .
lowQualScore : 333 5 7 777777777777777777777777777777 7 5 0 7 0 2 0 2 888888 88 0 22222222222222222222222222222222222 777777777777777 7 7 0 7 0 5 0 22 2 222222 0 777777 5 555 0 5 0 0 0 0 0 0 0 0 0 0 0 5 0 0 55555555555555555 0 00 55 0 0
consensus : GTGCGTTCAGAGTACTGCCGTTGGTTACCATCGGCAGAATNTTTTACCATTGGTA-TATGACAATG------GTACCAAT---GTTTGCCAATAAAATTTTCTGTTNATGACGTAATCCAAAATGGCGGGCATCGTGTCCACACTGAGAAC-GC-TNAACA-GATTTTGTATCACAGC----GTNGTCGTGAAATTCA-ACTGAAGAC--ANTTTTAGATATNTTTTG--TTAAA-TATATCNCTGGACAGATGGAANTGAGTTTTTAAAACACCAANTGTATATGATGGCAGAGTGATCATTCACTT--T--AGCCATTTCGTCAGAG-TAC-CGTAAGTTTTGNAACGGAGAATACTATTTTCGCTAGCCAGGAGCTCACTTCACTACCCATTTTATAGACCAGAAACCCTTGGCTAGCNAAAATATTGNGANNNNAGNNTTANAGTATGAATGTGTCTTTTCGACATTTCATGGTCTAACTGATCATCCAGTGGTATACCAA
Reference ( gi|1 ) : GTGCGTTCCGCGTACTAACGTTGGTTACCATCGGCAGAATTTTTTACCATTGGTATTATGGCGTTGGTACATGTACCAATGACGTTTGCCAATAACATTTTCTGTTGACGACGTAATTCAAAGTGGCGGCCATCGTGTCCACACTGAGAAC-AC-TAAACC-GATTTTGTACCACAGCAAGTATGATCATGA---TCA-ACTGAAGAC--ATTTTTAGATATGTTTTGCTTTAAAACATGTCCCTGGACAGATAGAAATGAGTTTTTAAAACATTAAATGTATATGATGGCAAAGTGATCACTCACTT--T--AGCCATTCCGTCAGAG-TATGCGTAAGTTTTGCAAGGAAAAGTACTATCTTTGCTAACCAAGAGTTGACTTCACTTCCCA-TTTATGGACCAAAAACCCTTAGCTAGCGAAAATATGGAGAAAATAATCTTAGA-TATGAATGTATCTTTTTGACATTTCATGAT--AACTAATCATCCAGTGGTACACCAA
gi|4 : GTGCGTTCAGAGTACTGCAGTTGGTTACTGTCGACAGAATATTTTAGCATTGGTA--A-GACAATG------GTACCAAT---GTTTGCCAATAAAATTTTCTGTTG
gi|9 : GTGCGTTCAGAGTACTACCGTTGGTTACCATCGGCAGgtaaacatttctgcaggcaacctaggtctctgttagcgttggtaactttatttatggcgtaatacaaaatagcgggcatcgtttccccactgagaatgcttcaatagattttgtatcacaggtgatttgaaattcacactggagatgaatttccgggtgtg
gi|5 : gCGTTCATAGTACTGTCGTTAGTTACCATCGGCAGAATCTTTTACCATTGG---TATGACAATG------GTACCAAT---GTTTGGCATCAACATTTTCTGTTGgtatgacactggtaccaattttctgcagacaacctaaagctctgttagcgttgataactttatttatacca
gi|7 : GTACTACCGTTGGTTACCATCGGCAgtaaagttttctgcaggcaacctagagctctgttagcgttggtaactttatctatcacgtcatccaaaacggcgggcatcttgcccacatcgagagtttttttgtttgtcacacacatcgagagtttttgtgtcacaacaatccgtttact
gi|18 : ccagaTGGTTACCATCGGCAGAATTGTTTACCATagtatgacactggataaacatttctacccgggatttctacagacaacctaaggctctgttagcgttgataactttatttatacc
gi|6 : TATGGCAATGGTAC------CAATG---TTTGCCAATAAAATTTTCTGTTG
gi|10 : gTTTATTTATGACGCAATCCAAAATGGTGGACATCGTGTCCACACTGAGAACAAT-TGAACA-GATTTTGTATCACAGCgaaaacatttctgcagacaatctaaagctctgttagcgttggtaactttatttatgacgtaatccaaaatggagggcatcgtgtccacactgggaacacttaaccagaatttgtatcacagctattcattgaca
gi|6 : ctgttagcgttggtaacTTTATTTATGACGTAATCCAAAATGGAGGGCATCGTGTCCACACTGGGAAC-AC-TTAACCAGAATTTGTATCACAGCttttcg
gi|4 : gtatggcaatggtaccaatgtttgccaataaaattttctgttggaaaacatttctgcagacaatctaaagctctgttagcgttggtaacTTTATTTATGGCGTAATACAAAATAGCGGGCATCGTTTCCCCACTGAGAAT-GCTTCAATA-GATTTTGTATCACAG-----GTGATT-TGAAATTCACACTGGAGATGAATTTCCGGGTGTGtattcattgaca
gi|3 : gtgcgttcagagtactgcagttggttactgtcgacagaatattttagcattggtaagacaatggtaccaatgtttgccaataaaattttctgttggtaaacatttctgcaggcaacctaggtctctgttagcgttggtaacCAAAATGATAGGTATCGTGTCCACACTGTGAAC-ATATGAACA-TATTTTGTATGATAGC-----TTGTCGT-----------TGAAA------TTTTAGATAT--------------TATATCCCTGGACAGATGGAATTAAGTTTTTAAAACATCAATTGTATATGATAGCTGAGTGATCATTCACTTTCT--AGTCATTTCGTCAAAGTTAT-TGTAAGTTTTGAAACGGAGAATAC-ATTTTCGCTAGCCAGGAGCTCACTTCACTACCCATTTTATAGACCAGAAACCCTTGGCTAGCGAAAATATTGAGAACAAAGGCTTACA----GAATGT
gi|2 : A-ACTGAAGAC--CATTTTAGATATCTTTTGAATTAAA-CATATCTCTGGACAGATGGAAATGAGTATTTAAAACACCAAGTGTATATGATGGCAGAGTAAACACTCACTC--T--AGCCATTCCGTCCGAG-TACGCATGAAATTTCCAAGAGAAAATACT
gi|13 : A-ATTGAAGA---AGTTTTAGATATATTTTGCTTTAAA-TATGTCACTGAACAGGTAGAAGTGAGTTTtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacagtaattaaaatatattctaaacgcaatttccggctaaaatattgtaacacttattaaagtatgaatgtgtcttttcgacattttgatctaactgatcatccagtggtat
gi|14 : ATATGATAGCAGAGTGATC-TTCACTT--TCTAGTCATTTCGTCAAAC-TTCTTGTAAGTTTTG
gi|16 : cATGATGGCAGAGTGATCATTC------T--AGCCATTTCGTCAGA
gi|2 : taactttattcaGCTAAAATATTGTAACACT--TATTAAAGTATGAATGTGTCTTTTCGACATTT--TGATCTAACTGATCATCCAGTGGTAct
gi|11 : aactgaagaccattttagatatcttttgaattaaacatatctctggacagatggaaatgagtatttaaaacaccaagtgtatatgatggcagagtaaacactcactctagccattccgtccgagtacgcatgaaatttccaagagaaaatacttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacagtaattaaaatatattctaaacgcaatttccgTTTGACATTTCATGGT--AACTGATCATCCAGTGGTATACCAAt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): TATTTTACATCGGATTGACAATGGTACCAAATGAGTTTGCACAATAAGGACTTGTCGAAAACATGTTGCAGACAACATAGAGCTCTTATTAACGTATTAGGTAACTTTATTATG
Unaligned ( gi|12 ): AATAAAATTTACCGATATTAAACATTTCTACAGGCAATCTATTTGCTCTGTTAGCGTTGTTAACTTTATTCAA
Unaligned ( gi|15 ): AGTCACTTTCGCTAGCCAAGAGCTTACGTACGATCCAAGTACGCTTCTCTATACA
Unaligned ( gi|17 ): ATATTTTACCATTGGTATGACAATGGTACCA
Alignments
lowQualScore : 111111 111111 111111 111 2222 555555555555555555555 1111 1 4444444 111 11111 3333 1 11111111 222
lowQualScore : 0 3 0 999999 666666 5 555555 6 888 99 0 0 1 3333 1 8 888888888888888888888 7777 0 2222222 1 1 0 1 444 0 0 33333 5555 1 6 0 7 0 3 6 5 1 1 77777777 1 6 0 6 333
lowQualScore : . . . ...... ...... . ...... . ... .. . . . .... . . ..................... .... . ....... . . . . ... . . ..... .... . . . . . . . . . . ........ . . . . ...
lowQualScore : 8 0 7 000000 444444 7 000000 7 333 22 6 8 0 2222 0 0 555555555555555555555 8888 8 8888888 0 0 7 0 000 8 8 00000 5555 0 7 7 3 7 7 7 5 0 0 00000000 0 7 7 7 000
consensus : GTGCGTTCAGAGTACTACCGTTGGTTACCATCGGCAGAATNTTTTACCATTGGTAT-ATGACAATGGTAC------C-AAT--G---TT-TGC---CAA--TAAAATTTTCTGTTTATGACGTAATCCAAAATGGCGGGCATCGTGTCCACACTGAGAAC-AC-TNAA-CAGATTTTGTATCACAGCG----TGATCGTGA---TCA-ACTGAAGAC-AATTTTAGATATNTTTTG--TT---AAACATGTCCCTGGACAGATGGAAATGAGTTTTTAAAACATCAANTGTAT---ATGATGGCAGAGTGATCATTCACTT--T--AGCCATTTCGTCAGAGT-ACGCGTAAGTTTTGCAAGGGAAAATACTATTTTCGCTAGCCAAGAGCTNACTTCACTACCCATTTTATGGACCAGAAACCCTTGGCTAGCGAAAATATTGAGAAAATAGTCTTANAGTATGAATGTGTCTTTTCGACATTTCATGAT-TAACTGATCATCCAGTGGTATACCAA
Reference ( family-3529 ) : GTGCGTTCAGAGTACTGCCGTTGGTTACCATCGGCAGAATNTTTTACCATTGGTAT-ATGACAATGGTAC------C-AAT--G---TT-TGC---CAA--TAAAATTTTCTGTTNATGACGTAATCCAAAATGGCGGGCATCGTGTCCACACTGAGAAC-GC-TNAA-CAGATTTTGTATCACAGCG----TNGTCGTGAAATTCA-ACTGAAGAC-ANTTTTAGATATNTTTTG--TT---AAATATATCNCTGGACAGATGGAANTGAGTTTTTAAAACACCAANTGTAT---ATGATGGCAGAGTGATCATTCACTT--T--AGCCATTTCGTCAGAGT-AC-CGTAAGTTTTGNAACGGAGAATACTATTTTCGCTAGCCAGGAGCTCACTTCACTACCCATTTTATAGACCAGAAACCCTTGGCTAGCNAAAATATTGNGANNNNAGNNTTANAGTATGAATGTGTCTTTTCGACATTTCATGGTCTAACTGATCATCCAGTGGTATACCAA
gi|1 : GTGCGTTCCGCGTACTAACGTTGGTTACCATCGGCAGAATTTTTTACCATTGGTATTATGGCGTTGGTACATGTACC-AAT--GACGTT-TGC---CAA--TAACATTTTCTGTTGACGACGTAATTCAAAGTGGCGGCCATCGTGTCCACACTGAGAAC-AC-TAAA-CCGATTTTGTACCACAGCAAGTATGATCATGA---TCA-ACTGAAGAC-ATTTTTAGATATGTTTTG--CTTTAAAACATGTCCCTGGACAGATAGAAATGAGTTTTTAAAACATTAAATGTAT---ATGATGGCAAAGTGATCACTCACTT--T--AGCCATTCCGTCAGAGT-ATGCGTAAGTTTTGCAAGGAAAAGTACTATCTTTGCTAACCAAGAGTTGACTTCACTTCCCA-TTTATGGACCAAAAACCCTTAGCTAGCGAAAATATGGAGAAAATAATCTTAGA-TATGAATGTATCTTTTTGACATTTCATGA--TAACTAATCATCCAGTGGTACACCAA
gi|10 : TTTATTTATGACGCAATCCAAAATGGTGGACATCGTGTCCACACTGAGAACAAT-TGAA-CAGATTTTGTATCACAGC
gi|11 : ctgttagcgttggtaacTTTGACATTTCATGGT--AACTGATCATCCAGTGGTATACCAAttttcg
gi|13 : tggagaataataagtaataaacagtaattagaaatagctcttaaaaA-ATTGAAGA--AGTTTTAGATATATTTTGCTTT---AAATATGTCACTGAACAGGTAGAAGTGAGTTTtggta
gi|14 : AT---ATGATAGCAGAGTGATC-TTCACTTTCT--AGTCATTTCGTCAAACT-TCTTGTAAGTTTTG
gi|15 : cACTTTCGCTAGCCAAGAGCTTACGT-ACGATCCA
gi|16 : agtcAACTTTATTCAATGATGGCAGAGTGATCATTC------T--AGCCATTTCGTCAGAagtacgcttctctataca
gi|17 : tATATTTTACCATTGGTAT---GACAATGGTAC------C-Act
gi|18 : TGGTTACCATCGGCAGAATTGTTTACCAT
gi|2 : A-ACTGAAGAC-CATTTTAGATATCTTTTGAATT---AAACATATCTCTGGACAGATGGAAATGAGTATTTAAAACACCAAGTGTAT---ATGATGGCAGAGTAAACACTCACTC--T--AGCCATTCCGTCCGAGT-ACGCATGAAATTTCCAAGAGAAAATACT
gi|2 : GCTAAAATATTGTAACACT--TATTAAAGTATGAATGTGTCTTTTCGACATTT--TGATCTAACTGATCATCCAGTGGTATtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacagtaattaaaatatattctaaacgcaatttccggctaaaatattgtaacacttattaaagtatgaatgtgtcttttcgacattttgatctaactgatcatccagtggtat
gi|3 : aactgaagaccattttagatatcttttgaattaaacatatctctggacagatggaaatgagtatttaaaacaccaagtgtatatgatggcagagtaaacactcactctagccattccgtccgagtacgcatgaaatttccaagagaaaatacttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacagtaattaaaatatattctaaacgcaatttccgCAAAATGATAGGTATCGTGTCCACACTGTGAAC-ATATGAA-CATATTTTGTATGATAGC-----TTGTCGT-----------TGAA-----ATTTTAGATAT----------------TATATCCCTGGACAGATGGAATTAAGTTTTTAAAACATCAATTGTAT---ATGATAGCTGAGTGATCATTCACTT--TCTAGTCATTTCGTCAAAGTTAT-TGTAAGTTTTGAAACGGAGAATAC-ATTTTCGCTAGCCAGGAGCTCACTTCACTACCCATTTTATAGACCAGAAACCCTTGGCTAGCGAAAATATTGAGAACAAAGGCTTACAGAATG
gi|4 : GTGCGTTCAGAGTACTGCAGTTGGTTACTGTCGACAGAATATTTTAGCATTGGTA--A-GACAATGGTAC------C-AAT--G---TT-TGC---CAA--TAAAATTTTCTGTTGGTAAt
gi|4 : TTTATTTATGGCGTAATACAAAATAGCGGGCATCGTTTCCCCACTGAGAAT-GCTTCAA-TAGATTTTGTATCACAG-G----TGATT-TGAAATTCACACTGGAGATGAATTTacatttctgcaggcaacctaggtctctgttagcgttggtaactttatttatggcgtaatacaaaatagcgggcatcgtttccccactgagaatgcttcaatagattttgtatcacaggtgatttgaaattcacactggagatgaatttccgggtgtg
gi|5 : gtgcgttcagagtactgcagttggttactgtcgacagaatattttagcattggtaagacaatggtaccaatgtttgccaataaaattttctgttggtaaacatttctgcaggcaacctaggtctctgttagcgttggtaacCGTTCATAGTACTGTCGTTAGTTACCATCGGCAGAATCTTTTACCATTGG--T-ATGACAATGGTAC------C-AAT--G---TT-TGG---CAT--CAACATTTTCTGTTGGTAAAGTccgggtgtg
gi|5 : TTTATCTATCACGTCATCCAAAACGGCGGGCATCTTGCCCACATCGAGAtttctgcaggcaacctagagctctgttagcgttggtaactttatctatcacgtcatccaaaacggcgggcatcttgcccacatcgagagtttttttgtttgtcacacacatcgagagtttttgtgtcacaacaatccgtttact
gi|6 : cgttcatagtactgtcgttagttaccatcggcagaatcttttaccattggtatgacaatggtaccaatgtttggcatcaacattttctgttggtaaagttttctgcaggcaacctagagctctgttagcgttggtaacT-ATGGCAATGGTAC------C-AAT--G---TT-TGC---CAA--TAAAATTTTCTGTTgtttttttgtttgtcacacacatcgagagtttttgtgtcacaacaatccgtttact
gi|6 : gTTTATTTATGACGTAATCCAAAATGGAGGGCATCGTGTCCACACTGGGAAC-AC-TTAACCAGAATTTGTATCACAGCggaaaacatttctgcagacaatctaaagctctgttagcgttggtaactttatttatgacgtaatccaaaatggagggcatcgtgtccacactgggaacacttaaccagaatttgtatcacagctattcattgaca
gi|7 : gtatggcaatggtaccaatgtttgccaataaaattttctgttggaaaacatttctgcagacaatctaaagctctgttagcgttggtaacCAGAGTACTACCGTTGGTTACCATCGGCAtattcattgaca
gi|8 : cTATTTTAC-ATCGG-AT--TGACAATGGTAC------CAAATGAG---TT-TGCA--CAA--TAAagtatgacactggataaacatttctacccgggatttctacagacaacctaaggctctgttagcgttgataactttatttatacc
gi|9 : GTGCGTTCAGAGTACTACCGTTGGTTACCATCGGCAG-----------------GT-ATGACACTGGTAC------C-AAT--T---TTCTGCAGACAACCTAAAG--CTCTGTTggacttgtcgaaaacatgttgcagacaacatagagctcttattaacgtattaggtaactttattatg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AATAAAATTTACCGATATTAAACATTTCTACAGGCAATCTATTTGCTCTGTTAGCGTTGTTAACTTTATTCAA
Alignments
lowQualScore : 2222 111111 111111 111 44444444444444444444444 333333333333333333333 111 4444444 111 22 1 11 222
lowQualScore : 0 3 0 4444 666666 5 555555 6 888 99 0 0 55555555555555555555555 1 6 999999999999999999999 666 44 2222222 0 0 1 1 444 0 0 22 666 7 1 6 5 11 1 6 0 6 888
lowQualScore : . . . .... ...... . ...... . ... .. . . ....................... . . ..................... ... .. ....... . . . . ... . . .. ... . . . . .. . . . . ...
lowQualScore : 8 0 7 7777 444444 7 000000 7 333 22 6 8 88888888888888888888888 0 7 888888888888888888888 888 22 8888888 2 2 2 0 000 8 8 00 888 3 0 7 5 00 0 7 7 7 000
consensus : GTGCGTTCAGAGTACTACCGTTGGTTACCATCGGCAGAATNTTTTACCATTGG-AT-ATGACAATGGTAC------C-AAT--G---TT-TGC---CAA--TAAAATTTTCTGTTTATGACGTAATCCAAAATGGCGGGCATCGTGTCCACACTGAGA---------------AC-AC---TNAA-CAGATTTTGTATCACAGCG----TGATCGTGA---TCA-ACTGAAGAC-AATTTTAGATATNTTTTG--TT---AAACATGTCCCTGGACAGATGGAAATGAGTTTTTAAAACATCAANTGTAT---ATGATGGCAGAGTGATCATTCACTTTCTAGCCATTTCGTCAGAGTNCGCGTAAGTTTTGCAAGGGAAAATACTATTTTCGCTAGCCAAGAGCTNACTTCACTACCCATTTTATGGACCAGAAACCCTTGGCTAGCGAAAATATTGAGAAAATAGTCTTANAGTATGAATGTGTCTTTTCGACATTTCATGAT-TAACTGATCATCCAGTGGTATACCAA
Reference ( family-3529 ) : GTGCGTTCAGAGTACTACCGTTGGTTACCATCGGCAGAATNTTTTACCATTGGTAT-ATGACAATGGTAC------C-AAT--G---TT-TGC---CAA--TAAAATTTTCTGTTTATGACGTAATCCAAAATGGCGGGCATCGTGTCCACACTGAGA---------------AC-AC---TNAA-CAGATTTTGTATCACAGCG----TGATCGTGA---TCA-ACTGAAGAC-AATTTTAGATATNTTTTG--TT---AAACATGTCCCTGGACAGATGGAAATGAGTTTTTAAAACATCAANTGTAT---ATGATGGCAGAGTGATCATTCACTTT--AGCCATTTCGTCAGAGTACGCGTAAGTTTTGCAAGGGAAAATACTATTTTCGCTAGCCAAGAGCTNACTTCACTACCCATTTTATGGACCAGAAACCCTTGGCTAGCGAAAATATTGAGAAAATAGTCTTANAGTATGAATGTGTCTTTTCGACATTTCATGAT-TAACTGATCATCCAGTGGTATACCAA
gi|1 : GTGCGTTCCGCGTACTAACGTTGGTTACCATCGGCAGAATTTTTTACCATTGGTATTATGGCGTTGGTACATGTACC-AAT--GACGTT-TGC---CAA--TAACATTTTCTGTTGACGACGTAATTCAAAGTGGCGGCCATCGTGTCCACACTGAGA---------------AC-AC---TAAA-CCGATTTTGTACCACAGCAAGTATGATCATGA---TCA-ACTGAAGAC-ATTTTTAGATATGTTTTG--CTTTAAAACATGTCCCTGGACAGATAGAAATGAGTTTTTAAAACATTAAATGTAT---ATGATGGCAAAGTGATCACTCACTTT--AGCCATTCCGTCAGAGTATGCGTAAGTTTTGCAAGGAAAAGTACTATCTTTGCTAACCAAGAGTTGACTTCACTTCCCA-TTTATGGACCAAAAACCCTTAGCTAGCGAAAATATGGAGAAAATAATCTTAGA-TATGAATGTATCTTTTTGACATTTCATGA--TAACTAATCATCCAGTGGTACACCAA
gi|10 : TTTATTTATGACGCAATCCAAAATGGTGGACATCGTGTCCACACTGAGA---------------ACAAT---TGAA-CAGATTTTGTATCACAGC
gi|11 : ctgttagcgttggtaacTTTGACATTTCATGGT--AACTGATCATCCAGTGGTATACCAAttttcg
gi|13 : tggagaataataagtaataaacagtaattagaaatagctcttaaaaA-ATTGAAGA--AGTTTTAGATATATTTTGCTTT---AAATATGTCACTGAACAGGTAGAAGTGAGTTTtggta
gi|14 : AT---ATGATAGCAGAGTGATC-TTCACTTTCTAGTCATTTCGTCAAACTTCTTGTAAGTTTTG
gi|15 : cACTTTCGCTAGCCAAGAGCTTACGT-ACGATCCA
gi|16 : agtcAACTTTATTCAATGATGGCAGAGTGATCATTC----T--AGCCATTTCGTCAGAagtacgcttctctataca
gi|17 : tATATTTTACCATTGG--T-ATGACAATGGTAC------C-Act
gi|18 : TGGTTACCATCGGCAGAATTGTTTACCAT
gi|2 : A-ACTGAAGAC-CATTTTAGATATCTTTTGAATT---AAACATATCTCTGGACAGATGGAAATGAGTATTTAAAACACCAAGTGTAT---ATGATGGCAGAGTAAACACTCACTCT--AGCCATTCCGTCCGAGTACGCATGAAATTTCCAAGAGAAAATACT
gi|2 : GCTAAAATATTGTAACACT--TATTAAAGTATGAATGTGTCTTTTCGACATTT--TGATCTAACTGATCATCCAGTGGTATtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacagtaattaaaatatattctaaacgcaatttccggctaaaatattgtaacacttattaaagtatgaatgtgtcttttcgacattttgatctaactgatcatccagtggtat
gi|3 : aactgaagaccattttagatatcttttgaattaaacatatctctggacagatggaaatgagtatttaaaacaccaagtgtatatgatggcagagtaaacactcactctagccattccgtccgagtacgcatgaaatttccaagagaaaatacttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacagtaattaaaatatattctaaacgcaatttccgCAAAATGATAGGTATCGTGTCCACACTGTGA---------------AC-ATA--TGAA-CATATTTTGTATGATAGCT----TG-TCGT-----------TGAA-----ATTTTAGATATT----------------ATATCCCTGGACAGATGGAATTAAGTTTTTAAAACATCAATTGTAT---ATGATAGCTGAGTGATCATTCACTTTCTAGTCATTTCGTCAAAGTTATTGTAAGTTTTGAAACGGAGAATAC-ATTTTCGCTAGCCAGGAGCTCACTTCACTACCCATTTTATAGACCAGAAACCCTTGGCTAGCGAAAATATTGAGAACAAAGGCTTACAGAATG
gi|4 : GTGCGTTCAGAGTACTGCAGTTGGTTACTGTCGACAGAATATTTTAGCATTGGTA--A-GACAATGGTAC------C-AAT--G---TT-TGC---CAA--TAAAATTTTCTGTTt
gi|4 : TTTATTTATGGCGTAATACAAAATAGCGGGCATCGTTTCCCCACTGAGA---------------AT-GCT--TCAA-TAGATTTTGTATCACAG-G----TGATT-TGAAATTCACACTGGAGATGAATTTggtaaacatttctgcaggcaacctaggtctctgttagcgttggtaactttatttatggcgtaatacaaaatagcgggcatcgtttccccactgagaatgcttcaatagattttgtatcacaggtgatttgaaattcacactggagatgaatttccgggtgtg
gi|5 : gtgcgttcagagtactgcagttggttactgtcgacagaatattttagcattggtaagacaatggtaccaatgtttgccaataaaattttctgttggtaaacatttctgcaggcaacctaggtctctgttagcgttggtaacCGTTCATAGTACTGTCGTTAGTTACCATCGGCAGAATCTTTTACCATTGG--T-ATGACAATGGTAC------C-AAT--G---TT-TGG---CAT--CAACATTTTCTGTTccgggtgtg
gi|5 : TTTATCTATCACGTCATCCAAAACGGCGGGCATCTTGCCCACATCGAGAGTTTTTTTGTTTGTCAC-ACACATCGA-GAGTTTTTGTGTCACAACggtaaagttttctgcaggcaacctagagctctgttagcgttggtaactttatctatcacgtcatccaaaacggcgggcatcttgcccacatcgagagtttttttgtttgtcacacacatcgagagtttttgtgtcacaacaatccgtttact
gi|6 : cgttcatagtactgtcgttagttaccatcggcagaatcttttaccattggtatgacaatggtaccaatgtttggcatcaacattttctgttggtaaagttttctgcaggcaacctagagctctgttagcgttggtaacT-ATGGCAATGGTAC------C-AAT--G---TT-TGC---CAA--TAAAATTTTCTGTTaatccgtttact
gi|6 : gTTTATTTATGACGTAATCCAAAATGGAGGGCATCGTGTCCACACTGGGA---------------AC-AC---TTAACCAGAATTTGTATCACAGCggaaaacatttctgcagacaatctaaagctctgttagcgttggtaactttatttatgacgtaatccaaaatggagggcatcgtgtccacactgggaacacttaaccagaatttgtatcacagctattcattgaca
gi|7 : gtatggcaatggtaccaatgtttgccaataaaattttctgttggaaaacatttctgcagacaatctaaagctctgttagcgttggtaacCAGAGTACTACCGTTGGTTACCATCGGCAtattcattgaca
gi|8 : cTATTTTAC-ATCGG-AT--TGACAATGGTAC------CAAATGAG---TT-TGCA--CAA--TAAagtatgacactggataaacatttctacccgggatttctacagacaacctaaggctctgttagcgttgataactttatttatacc
gi|9 : GTGCGTTCAGAGTACTACCGTTGGTTACCATCGGCAG-----------------GT-ATGACACTGGTAC------C-AAT--T---TTCTGCAGACAACCTAAAG--CTCTGTTggacttgtcgaaaacatgttgcagacaacatagagctcttattaacgtattaggtaactttattatg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AATAAAATTTACCGATATTAAACATTTCTACAGGCAATCTATTTGCTCTGTTAGCGTTGTTAACTTTATTCAA
Alignments
lowQualScore : 22222222 1111 111111 111111 1 111 111 44444444444444444444444 11111 33333333333 111 4444444 111 1 11 222
lowQualScore : 5 0 4 66 99999999 8 0000 444444 5 111111 1 555 777 3 1 55555555555555555555555 1 6 77777 7 33333333333 666 44 2222222 0 0 1 1 444 77 5 0 333 7 1 6 5 11 1 6 0 6 888
lowQualScore : . . . .. ........ . .... ...... . ...... . ... ... . . ....................... . . ..... . ........... ... .. ....... . . . . ... .. . . ... . . . . .. . . . . ...
lowQualScore : 2 1 3 00 00000000 9 6666 444444 0 444444 4 777 999 2 7 88888888888888888888888 0 7 88888 3 11111111111 888 22 8888888 2 2 2 0 000 66 6 8 888 3 0 7 5 00 0 7 7 7 000
consensus : GTGCGTTCAGAGTACTACCGTTGGTTACCATCGGCAGAATATTTTACCATCGG-A------T-ATGACAA----TGGTAC------C-AAT--G---TT-TGC---CAA---TAAAATTTTCTGTTTATGACGTAATCCAAAATGGCGGGCATCGTGTCCACACTGAGA---------------AC-AC---TNAA-CAGATTTTGTATCACAGC----GTGATCGTGA---TCA-ACTGAAGAC-AATTTTAGATATNTTTTG--TT---AAACATGTCCCTGGACAGATGGAAATGAGTTTTTAAAACATCAANTGTAT---ATGATGGCAGAGTGATCACTCACTTTCTAGCCATTTCGTCAGAGTNCGCGTAAGTTTTGCAAGGGAAAATACTATTTTCGCTAGCCAAGAGCTNACTTCACTACCCATTTTATGGACCAGAAACCCTTGGCTAGCGAAAATATTGAGAAAATAGTCTTANAGTATGAATGTGTCTTTTCGACATTTCATGAT-TAACTGATCATCCAGTGGTATACCAA
Reference ( family-3529 ) : GTGCGTTCAGAGTACTACCGTTGGTTACCATCGGCAGAATNTTTTACCATTGG-A------T-ATGACAA----TGGTAC------C-AAT--G---TT-TGC---CAA---TAAAATTTTCTGTTTATGACGTAATCCAAAATGGCGGGCATCGTGTCCACACTGAGA---------------AC-AC---TNAA-CAGATTTTGTATCACAGC----GTGATCGTGA---TCA-ACTGAAGAC-AATTTTAGATATNTTTTG--TT---AAACATGTCCCTGGACAGATGGAAATGAGTTTTTAAAACATCAANTGTAT---ATGATGGCAGAGTGATCATTCACTTTCTAGCCATTTCGTCAGAGTNCGCGTAAGTTTTGCAAGGGAAAATACTATTTTCGCTAGCCAAGAGCTNACTTCACTACCCATTTTATGGACCAGAAACCCTTGGCTAGCGAAAATATTGAGAAAATAGTCTTANAGTATGAATGTGTCTTTTCGACATTTCATGAT-TAACTGATCATCCAGTGGTATACCAA
gi|1 : GTGCGTTCCGCGTACTAACGTTGGTTACCATCGGCAGAATTTTTTACCATTGGTA------TTATGGCGT----TGGTACATGTACC-AAT--GACGTT-TGC---CAA---TAACATTTTCTGTTGACGACGTAATTCAAAGTGGCGGCCATCGTGTCCACACTGAGA---------------AC-AC---TAAA-CCGATTTTGTACCACAGCAAGTATGATCATGA---TCA-ACTGAAGAC-ATTTTTAGATATGTTTTG--CTTTAAAACATGTCCCTGGACAGATAGAAATGAGTTTTTAAAACATTAAATGTAT---ATGATGGCAAAGTGATCACTCACTT--TAGCCATTCCGTCAGAGTATGCGTAAGTTTTGCAAGGAAAAGTACTATCTTTGCTAACCAAGAGTTGACTTCACTTCCCA-TTTATGGACCAAAAACCCTTAGCTAGCGAAAATATGGAGAAAATAATCTTAGA-TATGAATGTATCTTTTTGACATTTCATGA--TAACTAATCATCCAGTGGTACACCAA
gi|10 : TTTATTTATGACGCAATCCAAAATGGTGGACATCGTGTCCACACTGAGA---------------ACAAT---TGAA-CAGATTTTGTATCACAGC----
gi|11 : ctgttagcgttggtaacTTTGACATTTCATGGT--AACTGATCATCCAGTGGTATACCAAttttcg
gi|13 : tggagaataataagtaataaacagtaattagaaatagctcttaaaaA-ATTGAAGA--AGTTTTAGATATATTTTGCTTT---AAATATGTCACTGAACAGGTAGAAGTGAGTTTtggta
gi|14 : AT---ATGATAGCAGAGTGATC-TTCACTTTCTAGTCATTTCGTCAAACTTCTTGTAAGTTTTG
gi|15 : cACTTTCGCTAGCCAAGAGCTTACGT-ACGATCCA
gi|16 : agtcAACTTTATTCAATGATGGCAGAGTGATCA------TTCTAGCCATTTCGTCAGAagtacgcttctctataca
gi|17 : tATATTTTACCATTGG--------T-ATGACAA----TGGTAC------C-Act
gi|18 : TGGTTACCATCGGCAGAATTGTTTACCAT
gi|2 : A-ACTGAAGAC-CATTTTAGATATCTTTTGAATT---AAACATATCTCTGGACAGATGGAAATGAGTATTTAAAACACCAAGTGTAT---ATGATGGCAGAGTAAACACTCAC--TCTAGCCATTCCGTCCGAGTACGCATGAAATTTCCAAGAGAAAATACT
gi|2 : GCTAAAATATTGTAACACT--TATTAAAGTATGAATGTGTCTTTTCGACATTT--TGATCTAACTGATCATCCAGTGGTATtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacagtaattaaaatatattctaaacgcaatttccggctaaaatattgtaacacttattaaagtatgaatgtgtcttttcgacattttgatctaactgatcatccagtggtat
gi|3 : aactgaagaccattttagatatcttttgaattaaacatatctctggacagatggaaatgagtatttaaaacaccaagtgtatatgatggcagagtaaacactcactctagccattccgtccgagtacgcatgaaatttccaagagaaaatacttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacagtaattaaaatatattctaaacgcaatttccgCAAAATGATAGGTATCGTGTCCACACTGTGA---------------AC-ATA--TGAA-CATATTTTGTATGATAGC----TTG-TCGT-----------TGAA-----ATTTTAGATATT----------------ATATCCCTGGACAGATGGAATTAAGTTTTTAAAACATCAATTGTAT---ATGATAGCTGAGTGATCATTCACTTTCTAGTCATTTCGTCAAAGTTATTGTAAGTTTTGAAACGGAGAATAC-ATTTTCGCTAGCCAGGAGCTCACTTCACTACCCATTTTATAGACCAGAAACCCTTGGCTAGCGAAAATATTGAGAACAAAGGCTTACAGAATG
gi|4 : GTGCGTTCAGAGTACTGCAGTTGGTTACTGTCGACAGAATATTTTAGCATTGG--------T-AAGACAA----TGGTAC------C-AAT--G---TT-TGC---CAA---TAAAATTTTCTGTTt
gi|4 : TTTATTTATGGCGTAATACAAAATAGCGGGCATCGTTTCCCCACTGAGA---------------AT-GCT--TCAA-TAGATTTTGTATCACAG-----GTGATT-TGAAATTCACACTGGAGATGAATTTggtaaacatttctgcaggcaacctaggtctctgttagcgttggtaactttatttatggcgtaatacaaaatagcgggcatcgtttccccactgagaatgcttcaatagattttgtatcacaggtgatttgaaattcacactggagatgaatttccgggtgtg
gi|5 : gtgcgttcagagtactgcagttggttactgtcgacagaatattttagcattggtaagacaatggtaccaatgtttgccaataaaattttctgttggtaaacatttctgcaggcaacctaggtctctgttagcgttggtaacCGTTCATAGTACTGTCGTTAGTTACCATCGGCAGAATCTTTTACCATTGG--------T-ATGACAA----TGGTAC------C-AAT--G---TT-TGG---CAT---CAACATTTTCTGTTccgggtgtg
gi|5 : CAGAGCTCTA-----GGTTGCC-T--GCAGAAAACTTTACCAACAG-AAAATGTTGATGCCAAACATTGGTAC------C-ATT--G---TCATAC---CAATGGTAAAAGATTCTGCCGATG--GTAAggtaaagttttctgcaggcaacctagagctctgttagcgttggtaactttatctatcacgtcatccaaaacggcgggcatcttgcccacatcgagagtttttttgtttgtcacacacatcgagagtttttgtgtcacaacaatccgtttact
gi|5 : cgttcatagtactgtcgttagTTTATCTATCACGTCATCCAAAACGGCGGGCATCTTGCCCACATCGAGAGTTTTTTTGTTTGTCAC-ACACATCGA-GAGTTTTTGTGTCACAAC----ttagcgttggtaactttatctatcacgtcatccaaaacggcgggcatcttgcccacatcgagagtttttttgtttgtcacacacatcgagagtttttgtgtcacaacaatccgtttact
gi|6 : cgttcatagtactgtcgttagttaccatcggcagaatcttttaccattggtatgacaatggtaccaatgtttggcatcaacattttctgttggtaaagttttctgcaggcaacctagagctctgttagcgttggtaac------T-ATGGCAA----TGGTAC------C-AAT--G---TT-TGC---CAA---TAAAATTTTCTGTTaatccgtttact
gi|6 : gTTTATTTATGACGTAATCCAAAATGGAGGGCATCGTGTCCACACTGGGA---------------AC-AC---TTAACCAGAATTTGTATCACAGC----ggaaaacatttctgcagacaatctaaagctctgttagcgttggtaactttatttatgacgtaatccaaaatggagggcatcgtgtccacactgggaacacttaaccagaatttgtatcacagctattcattgaca
gi|7 : gtatggcaatggtaccaatgtttgccaataaaattttctgttggaaaacatttctgcagacaatctaaagctctgttagcgttggtaacCAGAGTACTACCGTTGGTTACCATCGGCA-AGTA---TGACACTGG-A------T-Atattcattgaca
gi|8 : cTATTTTAC-ATCGG-A------T--TGACAA----TGGTAC------CAAATGAG---TT-TGCA--CAA---TAAaacatttctacccgggatttctacagacaacctaaggctctgttagcgttgataactttatttatacc
gi|9 : GTGCGTTCAGAGTACTACCGTTGGTTACCATCGGCA----------------G-G------T-ATGACAC----TGGTAC------C-AAT--T---TTCTGCAGACAACC-TAAAG--CTCTGTTggacttgtcgaaaacatgttgcagacaacatagagctcttattaacgtattaggtaactttattatg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AATAAAATTTACCGATATTAAACATTTCTACAGGCAATCTATTTGCTCTGTTAGCGTTGTTAACTTTATTCAA
Alignments
lowQualScore : 444444444444444 1111 111111 1 111 222 44444444444444444444444 11111 33333333333 111 4444444 111 1 11 222
lowQualScore : 0 3 0 5 2 2 11 4 1 222222222222222 4 8888 222222 4 66 888 5 0 333 444 33 1 0 5 55555555555555555555555 1 6 77777 7 33333333333 666 44 2222222 0 0 1 1 444 77 5 0 333 7 1 6 5 11 1 6 0 6 888
lowQualScore : . . . . . . .. . . ............... . .... ...... . .. ... . . ... ... .. . . . ....................... . . ..... . ........... ... .. ....... . . . . ... .. . . ... . . . . .. . . . . ...
lowQualScore : 1 0 7 1 5 5 99 0 1 777777777777777 4 9999 888888 4 99 888 0 0 888 444 33 3 1 7 88888888888888888888888 0 7 88888 3 11111111111 888 22 8888888 2 2 2 0 000 22 6 8 888 3 0 7 5 00 0 7 7 7 000
consensus : GTGCGTTCAGAGTACTACCGTTGGTTACCATCGGCAGAATAT-TTTACCATCGG---A------T----AT-GACAA----TGGTAC------C-AAT--G---T-T-TGC---CAA---TAAAATTTTCTGTTTACGAC-GTAATCCAAAATGGCGGGCATCGTGTCCACACTGAGA---------------AC-AC---TNAA-CAGATTTTGTATCACAGC----GTGATCGTGA---TCA-ACTGAAGAC-AATTTTAGATATNTTTTG--TT---AAACATGTCCCTGGACAGATGGAAATGAGTTTTTAAAACATCAANTGTAT---ATGATGGCAGAGTGATCACTCACTTTCTAGCCATTTCGTCAGAGTNCGCGTAAGTTTTGCAAGGGAAAATACTATTTTCGCTAGCCAAGAGCTNACTTCACTACCCATTTTATGGACCAGAAACCCTTGGCTAGCGAAAATATTGAGAAAATAGTCTTANAGTATGAATGTGTCTTTTCGACATTTCATGAT-TAACTGATCATCCAGTGGTATACCAA
Reference ( family-3529 ) : GTGCGTTCAGAGTACTACCGTTGGTTACCATCGGCAGAATAT-TTTACCATCGG---A------T----AT-GACAA----TGGTAC------C-AAT--G---T-T-TGC---CAA---TAAAATTTTCTGTTTATGAC-GTAATCCAAAATGGCGGGCATCGTGTCCACACTGAGA---------------AC-AC---TNAA-CAGATTTTGTATCACAGC----GTGATCGTGA---TCA-ACTGAAGAC-AATTTTAGATATNTTTTG--TT---AAACATGTCCCTGGACAGATGGAAATGAGTTTTTAAAACATCAANTGTAT---ATGATGGCAGAGTGATCACTCACTTTCTAGCCATTTCGTCAGAGTNCGCGTAAGTTTTGCAAGGGAAAATACTATTTTCGCTAGCCAAGAGCTNACTTCACTACCCATTTTATGGACCAGAAACCCTTGGCTAGCGAAAATATTGAGAAAATAGTCTTANAGTATGAATGTGTCTTTTCGACATTTCATGAT-TAACTGATCATCCAGTGGTATACCAA
gi|1 : GTGCGTTCCGCGTACTAACGTTGGTTACCATCGGCAGAATTT-TTTACCATTGGT--A------TT---AT-GGCGT----TGGTACATGTACC-AAT--GACGT-T-TGC---CAA---TAACATTTTCTGTTGACGAC-GTAATTCAAAGTGGCGGCCATCGTGTCCACACTGAGA---------------AC-AC---TAAA-CCGATTTTGTACCACAGCAAGTATGATCATGA---TCA-ACTGAAGAC-ATTTTTAGATATGTTTTG--CTTTAAAACATGTCCCTGGACAGATAGAAATGAGTTTTTAAAACATTAAATGTAT---ATGATGGCAAAGTGATCACTCACTT--TAGCCATTCCGTCAGAGTATGCGTAAGTTTTGCAAGGAAAAGTACTATCTTTGCTAACCAAGAGTTGACTTCACTTCCCA-TTTATGGACCAAAAACCCTTAGCTAGCGAAAATATGGAGAAAATAATCTTAGA-TATGAATGTATCTTTTTGACATTTCATGA--TAACTAATCATCCAGTGGTACACCAA
gi|10 : TTTATTTATGAC-GCAATCCAAAATGGTGGACATCGTGTCCACACTGAGA---------------ACAAT---TGAA-CAGATTTTGTATCACAGC----
gi|11 : ctgttagcgttggtaacTTTGACATTTCATGGT--AACTGATCATCCAGTGGTATACCAAttttcg
gi|13 : tggagaataataagtaataaacagtaattagaaatagctcttaaaaA-ATTGAAGA--AGTTTTAGATATATTTTGCTTT---AAATATGTCACTGAACAGGTAGAAGTGAGTTTtggta
gi|14 : AT---ATGATAGCAGAGTGATC-TTCACTTTCTAGTCATTTCGTCAAACTTCTTGTAAGTTTTG
gi|15 : cACTTTCGCTAGCCAAGAGCTTACGT-ACGATCCA
gi|16 : agtcAACTTTATTCAATGATGGCAGAGTGATCA------TTCTAGCCATTTCGTCAGAagtacgcttctctataca
gi|17 : tATAT-TTTACCATTGG----------T----AT-GACAA----TGGTAC------C-Act
gi|18 : TGGTTACCATCGGCAGAATTG-TTTACCAT
gi|2 : A-ACTGAAGAC-CATTTTAGATATCTTTTGAATT---AAACATATCTCTGGACAGATGGAAATGAGTATTTAAAACACCAAGTGTAT---ATGATGGCAGAGTAAACACTCAC--TCTAGCCATTCCGTCCGAGTACGCATGAAATTTCCAAGAGAAAATACT
gi|2 : GCTAAAATATTGTAACACT--TATTAAAGTATGAATGTGTCTTTTCGACATTT--TGATCTAACTGATCATCCAGTGGTATtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacagtaattaaaatatattctaaacgcaatttccggctaaaatattgtaacacttattaaagtatgaatgtgtcttttcgacattttgatctaactgatcatccagtggtat
gi|3 : aactgaagaccattttagatatcttttgaattaaacatatctctggacagatggaaatgagtatttaaaacaccaagtgtatatgatggcagagtaaacactcactctagccattccgtccgagtacgcatgaaatttccaagagaaaatacttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacagtaattaaaatatattctaaacgcaatttccgCAAAATGATAGGTATCGTGTCCACACTGTGA---------------AC-ATA--TGAA-CATATTTTGTATGATAGC----TTG-TCGT-----------TGAA-----ATTTTAGATATT----------------ATATCCCTGGACAGATGGAATTAAGTTTTTAAAACATCAATTGTAT---ATGATAGCTGAGTGATCATTCACTTTCTAGTCATTTCGTCAAAGTTATTGTAAGTTTTGAAACGGAGAATAC-ATTTTCGCTAGCCAGGAGCTCACTTCACTACCCATTTTATAGACCAGAAACCCTTGGCTAGCGAAAATATTGAGAACAAAGGCTTACAGAATG
gi|4 : GTGCGTTCAGAGTACTGCAGTTGGTTACTGTCGACAGAATAT-TTTAGCATTGG----------T----AA-GACAA----TGGTAC------C-AAT--G---T-T-TGC---CAA---TAAAATTTTCTGTTt
gi|4 : CAGAG----ACC-TAGGTTGCC-T--GCAGAA-ATGTTTACCAACAG---AAAATTTT----ATTGGCAAACATTGGTAC------C-ATT--G---TCT-TAC---CAATGCTAAAATATTCTGT---CGACAGTAA-CCAAggtaaacatttctgcaggcaacctaggtctctgttagcgttggtaactttatttatggcgtaatacaaaatagcgggcatcgtttccccactgagaatgcttcaatagattttgtatcacaggtgatttgaaattcacactggagatgaatttccgggtgtg
gi|4 : gtgcgttcagagtactgcagTTTATTTATGGC-GTAATACAAAATAGCGGGCATCGTTTCCCCACTGAGA---------------AT-GCT--TCAA-TAGATTTTGTATCACAG-----GTGATT-TGAAATTCACACTGGAGATGAATTTttagcgttggtaactttatttatggcgtaatacaaaatagcgggcatcgtttccccactgagaatgcttcaatagattttgtatcacaggtgatttgaaattcacactggagatgaatttccgggtgtg
gi|5 : gtgcgttcagagtactgcagttggttactgtcgacagaatattttagcattggtaagacaatggtaccaatgtttgccaataaaattttctgttggtaaacatttctgcaggcaacctaggtctctgttagcgttggtaacCGTTCATAGTACTGTCGTTAGTTACCATCGGCAGAATCT-TTTACCATTGG----------T----AT-GACAA----TGGTAC------C-AAT--G---T-T-TGG---CAT---CAACATTTTCTGTTccgggtgtg
gi|5 : CAGAGCTCTA-----GGTTGCC-T--GCAGAAAAC-TTTACCAACAGAAAA------TGTTGAT-GCCAAACATTGGTAC------C-ATT--G---T-CATAC---CAATGGTAAAAGATTCTGCCGATG---GTAAggtaaagttttctgcaggcaacctagagctctgttagcgttggtaactttatctatcacgtcatccaaaacggcgggcatcttgcccacatcgagagtttttttgtttgtcacacacatcgagagtttttgtgtcacaacaatccgtttact
gi|5 : cgttcatagtactgtcgttagTTTATCTATCAC-GTCATCCAAAACGGCGGGCATCTTGCCCACATCGAGAGTTTTTTTGTTTGTCAC-ACACATCGA-GAGTTTTTGTGTCACAAC----ttagcgttggtaactttatctatcacgtcatccaaaacggcgggcatcttgcccacatcgagagtttttttgtttgtcacacacatcgagagtttttgtgtcacaacaatccgtttact
gi|6 : cgttcatagtactgtcgttagttaccatcggcagaatcttttaccattggtatgacaatggtaccaatgtttggcatcaacattttctgttggtaaagttttctgcaggcaacctagagctctgttagcgttggtaac------T----AT-GGCAA----TGGTAC------C-AAT--G---T-T-TGC---CAA---TAAAATTTTCTGTTaatccgtttact
gi|6 : gTTTATTTATGAC-GTAATCCAAAATGGAGGGCATCGTGTCCACACTGGGA---------------AC-AC---TTAACCAGAATTTGTATCACAGC----ggaaaacatttctgcagacaatctaaagctctgttagcgttggtaactttatttatgacgtaatccaaaatggagggcatcgtgtccacactgggaacacttaaccagaatttgtatcacagctattcattgaca
gi|7 : gtatggcaatggtaccaatgtttgccaataaaattttctgttggaaaacatttctgcagacaatctaaagctctgttagcgttggtaacCAGAGTACTACCGTTGGTTACCATCGGCA-AGTAT-tattcattgaca
gi|8 : cTAT-TTTAC-ATCGG---A------T-----T-GACAA----TGGTAC------CAAATGAG---T-T-TGCA--CAA---TAAgacactggataaacatttctacccgggatttctacagacaacctaaggctctgttagcgttgataactttatttatacc
gi|9 : GTGCGTTCAGAGTACTACCGTTGGTTACCATCGGCA-----------------G---G------T----AT-GACAC----TGGTAC------C-AAT--T---T-TCTGCAGACAACC-TAAAG--CTCTGTTggacttgtcgaaaacatgttgcagacaacatagagctcttattaacgtattaggtaactttattatg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AATAAAATTTACCGATATTAAACATTTCTACAGGCAATCTATTTGCTCTGTTAGCGTTGTTAACTTTATTCAA
Alignments
lowQualScore : 444444444444444 1111 111111 1 111 222 44444444444444444444444 11111 33333333333 111 4444444 111 1 11 222
lowQualScore : 0 3 0 5 2 2 11 4 1 222222222222222 4 8888 222222 4 66 888 5 0 333 444 33 0 6 55555555555555555555555 1 6 77777 7 33333333333 666 44 2222222 0 0 1 1 444 77 5 0 333 7 1 6 5 11 1 6 0 6 888
lowQualScore : . . . . . . .. . . ............... . .... ...... . .. ... . . ... ... .. . . ....................... . . ..... . ........... ... .. ....... . . . . ... .. . . ... . . . . .. . . . . ...
lowQualScore : 1 0 7 1 5 5 99 0 1 777777777777777 4 9999 888888 4 99 888 0 0 888 444 33 7 7 88888888888888888888888 0 7 88888 3 11111111111 888 22 8888888 2 2 2 0 000 22 6 8 888 3 0 7 5 00 0 7 7 7 000
consensus : GTGCGTTCAGAGTACTACCGTTGGTTACCATCGGCAGAATAT-TTTACCATCGG---A------T----AT-GACAA----TGGTAC------C-AAT--G---T-T-TGC---CAA---TAAAATTTTCTGTTTACGAC-GTAATCCAAAATGGCGGGCATCGTGTCCACACTGAGA---------------AC-AC---TNAA-CAGATTTTGTATCACAGC----GTGATCGTGA---TCA-ACTGAAGAC-AATTTTAGATATNTTTTG--TT---AAACATGTCCCTGGACAGATGGAAATGAGTTTTTAAAACATCAANTGTAT---ATGATGGCAGAGTGATCACTCACTTTCTAGCCATTTCGTCAGAGTNCGCGTAAGTTTTGCAAGGGAAAATACTATTTTCGCTAGCCAAGAGCTNACTTCACTACCCATTTTATGGACCAGAAACCCTTGGCTAGCGAAAATATTGAGAAAATAGTCTTANAGTATGAATGTGTCTTTTCGACATTTCATGAT-TAACTGATCATCCAGTGGTATACCAA
Reference ( family-3529 ) : GTGCGTTCAGAGTACTACCGTTGGTTACCATCGGCAGAATAT-TTTACCATCGG---A------T----AT-GACAA----TGGTAC------C-AAT--G---T-T-TGC---CAA---TAAAATTTTCTGTTTACGAC-GTAATCCAAAATGGCGGGCATCGTGTCCACACTGAGA---------------AC-AC---TNAA-CAGATTTTGTATCACAGC----GTGATCGTGA---TCA-ACTGAAGAC-AATTTTAGATATNTTTTG--TT---AAACATGTCCCTGGACAGATGGAAATGAGTTTTTAAAACATCAANTGTAT---ATGATGGCAGAGTGATCACTCACTTTCTAGCCATTTCGTCAGAGTNCGCGTAAGTTTTGCAAGGGAAAATACTATTTTCGCTAGCCAAGAGCTNACTTCACTACCCATTTTATGGACCAGAAACCCTTGGCTAGCGAAAATATTGAGAAAATAGTCTTANAGTATGAATGTGTCTTTTCGACATTTCATGAT-TAACTGATCATCCAGTGGTATACCAA
gi|1 : GTGCGTTCCGCGTACTAACGTTGGTTACCATCGGCAGAATTT-TTTACCATTGGT--A------TT---AT-GGCGT----TGGTACATGTACC-AAT--GACGT-T-TGC---CAA---TAACATTTTCTGTTGACGAC-GTAATTCAAAGTGGCGGCCATCGTGTCCACACTGAGA---------------AC-AC---TAAA-CCGATTTTGTACCACAGCAAGTATGATCATGA---TCA-ACTGAAGAC-ATTTTTAGATATGTTTTG--CTTTAAAACATGTCCCTGGACAGATAGAAATGAGTTTTTAAAACATTAAATGTAT---ATGATGGCAAAGTGATCACTCACTT--TAGCCATTCCGTCAGAGTATGCGTAAGTTTTGCAAGGAAAAGTACTATCTTTGCTAACCAAGAGTTGACTTCACTTCCCA-TTTATGGACCAAAAACCCTTAGCTAGCGAAAATATGGAGAAAATAATCTTAGA-TATGAATGTATCTTTTTGACATTTCATGA--TAACTAATCATCCAGTGGTACACCAA
gi|10 : TTTATTTATGAC-GCAATCCAAAATGGTGGACATCGTGTCCACACTGAGA---------------ACAAT---TGAA-CAGATTTTGTATCACAGC----
gi|11 : ctgttagcgttggtaacTTTGACATTTCATGGT--AACTGATCATCCAGTGGTATACCAAttttcg
gi|13 : tggagaataataagtaataaacagtaattagaaatagctcttaaaaA-ATTGAAGA--AGTTTTAGATATATTTTGCTTT---AAATATGTCACTGAACAGGTAGAAGTGAGTTTtggta
gi|14 : AT---ATGATAGCAGAGTGATC-TTCACTTTCTAGTCATTTCGTCAAACTTCTTGTAAGTTTTG
gi|15 : cACTTTCGCTAGCCAAGAGCTTACGT-ACGATCCA
gi|16 : agtcAACTTTATTCAATGATGGCAGAGTGATCA------TTCTAGCCATTTCGTCAGAagtacgcttctctataca
gi|17 : tATAT-TTTACCATTGG----------T----AT-GACAA----TGGTAC------C-Act
gi|18 : TGGTTACCATCGGCAGAATTG-TTTACCAT
gi|2 : A-ACTGAAGAC-CATTTTAGATATCTTTTGAATT---AAACATATCTCTGGACAGATGGAAATGAGTATTTAAAACACCAAGTGTAT---ATGATGGCAGAGTAAACACTCAC--TCTAGCCATTCCGTCCGAGTACGCATGAAATTTCCAAGAGAAAATACT
gi|2 : GCTAAAATATTGTAACACT--TATTAAAGTATGAATGTGTCTTTTCGACATTT--TGATCTAACTGATCATCCAGTGGTATtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacagtaattaaaatatattctaaacgcaatttccggctaaaatattgtaacacttattaaagtatgaatgtgtcttttcgacattttgatctaactgatcatccagtggtat
gi|3 : aactgaagaccattttagatatcttttgaattaaacatatctctggacagatggaaatgagtatttaaaacaccaagtgtatatgatggcagagtaaacactcactctagccattccgtccgagtacgcatgaaatttccaagagaaaatacttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacagtaattaaaatatattctaaacgcaatttccgCAAAATGATAGGTATCGTGTCCACACTGTGA---------------AC-ATA--TGAA-CATATTTTGTATGATAGC----TTG-TCGT-----------TGAA-----ATTTTAGATATT----------------ATATCCCTGGACAGATGGAATTAAGTTTTTAAAACATCAATTGTAT---ATGATAGCTGAGTGATCATTCACTTTCTAGTCATTTCGTCAAAGTTATTGTAAGTTTTGAAACGGAGAATAC-ATTTTCGCTAGCCAGGAGCTCACTTCACTACCCATTTTATAGACCAGAAACCCTTGGCTAGCGAAAATATTGAGAACAAAGGCTTACAGAATG
gi|4 : GTGCGTTCAGAGTACTGCAGTTGGTTACTGTCGACAGAATAT-TTTAGCATTGG----------T----AA-GACAA----TGGTAC------C-AAT--G---T-T-TGC---CAA---TAAAATTTTCTGTTt
gi|4 : CAGAG----ACC-TAGGTTGCC-T--GCAGAA-ATGTTTACCAACAG---AAAATTTT----ATTGGCAAACATTGGTAC------C-ATT--G---TCT-TAC---CAATGCTAAAATATTCTGT---CGACAGTAA-CCAAggtaaacatttctgcaggcaacctaggtctctgttagcgttggtaactttatttatggcgtaatacaaaatagcgggcatcgtttccccactgagaatgcttcaatagattttgtatcacaggtgatttgaaattcacactggagatgaatttccgggtgtg
gi|4 : gtgcgttcagagtactgcagTTTATTTATGGC-GTAATACAAAATAGCGGGCATCGTTTCCCCACTGAGA---------------AT-GCT--TCAA-TAGATTTTGTATCACAG-----GTGATT-TGAAATTCACACTGGAGATGAATTTttagcgttggtaactttatttatggcgtaatacaaaatagcgggcatcgtttccccactgagaatgcttcaatagattttgtatcacaggtgatttgaaattcacactggagatgaatttccgggtgtg
gi|5 : gtgcgttcagagtactgcagttggttactgtcgacagaatattttagcattggtaagacaatggtaccaatgtttgccaataaaattttctgttggtaaacatttctgcaggcaacctaggtctctgttagcgttggtaacCGTTCATAGTACTGTCGTTAGTTACCATCGGCAGAATCT-TTTACCATTGG----------T----AT-GACAA----TGGTAC------C-AAT--G---T-T-TGG---CAT---CAACATTTTCTGTTccgggtgtg
gi|5 : CAGAGCTCTA-----GGTTGCC-T--GCAGAAAAC-TTTACCAACAGAAAA------TGTTGAT-GCCAAACATTGGTAC------C-ATT--G---T-CATAC---CAATGGTAAAAGATTCTGggtaaagttttctgcaggcaacctagagctctgttagcgttggtaactttatctatcacgtcatccaaaacggcgggcatcttgcccacatcgagagtttttttgtttgtcacacacatcgagagtttttgtgtcacaacaatccgtttact
gi|5 : cgttcatagtactgtcgttagttaccatcggTTTATCTATCAC-GTCATCCAAAACGGCGGGCATCTTGCCCACATCGAGAGTTTTTTTGTTTGTCAC-ACACATCGA-GAGTTTTTGTGTCACAAC----ttagcgttggtaactttatctatcacgtcatccaaaacggcgggcatcttgcccacatcgagagtttttttgtttgtcacacacatcgagagtttttgtgtcacaacaatccgtttact
gi|6 : cgttcatagtactgtcgttagttaccatcggcagaatcttttaccattggtatgacaatggtaccaatgtttggcatcaacattttctgttggtaaagttttctgcaggcaacctagagctctgttagcgttggtaac------T----AT-GGCAA----TGGTAC------C-AAT--G---T-T-TGC---CAA---TAAAATTTTCTGTTaatccgtttact
gi|6 : gTTTATTTATGAC-GTAATCCAAAATGGAGGGCATCGTGTCCACACTGGGA---------------AC-AC---TTAACCAGAATTTGTATCACAGC----ggaaaacatttctgcagacaatctaaagctctgttagcgttggtaactttatttatgacgtaatccaaaatggagggcatcgtgtccacactgggaacacttaaccagaatttgtatcacagctattcattgaca
gi|7 : gtatggcaatggtaccaatgtttgccaataaaattttctgttggaaaacatttctgcagacaatctaaagctctgttagcgttggtaacCAGAGTACTACCGTTGGTTACCATCGGCA-AGTAT-tattcattgaca
gi|8 : cTAT-TTTAC-ATCGG---A------T-----T-GACAA----TGGTAC------CAAATGAG---T-T-TGCA--CAA---TAAgacactggataaacatttctacccgggatttctacagacaacctaaggctctgttagcgttgataactttatttatacc
gi|9 : GTGCGTTCAGAGTACTACCGTTGGTTACCATCGGCA-----------------G---G------T----AT-GACAC----TGGTAC------C-AAT--T---T-TCTGCAGACAACC-TAAAG--CTCTGTTggacttgtcgaaaacatgttgcagacaacatagagctcttattaacgtattaggtaactttattatg
blockSeqs : C A C G TA G T AAAATGTTG T ACAT . A GA . C A AGA TGC TT A GTTTTTTTGTTTGTCACACACA G C T A TGAAATTCAC TGA AT CTTT G C TCA AC T TCT T T C T AG A G C TCT
blockSeqs : C G C G TT . T AAAATTTT . ACAT . . . . . C A TGG TA . ACAAT G . G . GT CC CT AATT A G . AT T ACG . C . . C G . T
blockSeqs : T A C G TA . C AT . . . . . . . . . CC TT . ACATA C . A T . T T . T . TAT
blockSeqs : C A C G TC . T GT . . . . . . . . . . GA . ATGCT C . . . A .
blockSeqs : C A C G AA . C T . . . . . . . . . . TT . ACAC T .
blockSeqs : . . . . TA . C T . . . . . . . . . . .
blockSeqs : . . . TA . . T . . . . . . . . . .
blockSeqs : A . . . . .
blockSeqs : . .
blockSeqCons : AT************* ****** *** ACGNT****************** C** AC
originalCons : GTGCGTTCAGAGTACTACCGTTGGTTACCATCGGCAGAATAT-TTTACCATCGG---A------T----AT-GACAA----TGGTAC------C-AAT--G---T-T-TGC---CAA---TAAAATTTTCTGTTTACGAC-GTAATCCAAAATGGCGGGCATCGTGTCCACACTGAGA---------------AC-AC---TNAA-CAGATTTTGTATCACAGC----GTGATCGTGA---TCA-ACTGAAGAC-AATTTTAGATATNTTTTG--TT---AAACATGTCCCTGGACAGATGGAAATGAGTTTTTAAAACATCAANTGTAT---ATGATGGCAGAGTGATCACTCACTTTCTAGCCATTTCGTCAGAGTNCGCGTAAGTTTTGCAAGGGAAAATACTATTTTCGCTAGCCAAGAGCTNACTTCACTACCCATTTTATGGACCAGAAACCCTTGGCTAGCGAAAATATTGAGAAAATAGTCTTANAGTATGAATGTGTCTTTTCGACATTTCATGAT-TAACTGATCATCCAGTGGTATACCAA
finalCons : GTGCGTTCAGAGTACTACCGTTGGTTACCATCGGCAGAATAT-TTTACCATCGGAT-------------AT-GACAA----TGGTAC------C-AAT--G---T-T-TGC---CAA---TAAAATTTTCTGTTTACGAC-GTAATCCAAAATGGCGGGCATCGTGTCCACACTGAGAACGNT------------------TNAA-CAGATTTTGTATCACAGC----GTGATCGTGA---TCA-ACTGAAGAC--ATTTTAGATATNTTTTG--TT---AAACATGTCCCTGGACAGATGGAAATGAGTTTTTAAAACATCAANTGTAT---ATGATGGCAGAGTGATCACTCACTTTCTAGCCATTTCGTCAGAGTNCGCGTAAGTTTTGCAAGGGAAAATACTATTTTCGCTAGCCAAGAGCTNACTTCACTACCCATTTTATGGACCAGAAACCCTTGGCTAGCGAAAATATTGAGAAAATAGTCTTANAGTATGAATGTGTCTTTTCGACATTTCATGAT-TAACTGATCATCCAGTGGTATACCAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AATAAAATTTACCGATATTAAACATTTCTACAGGCAATCTATTTGCTCTGTTAGCGTTGTTAACTTTATTCAA
Alignments
lowQualScore : 444444444444444 1111 111111 1 111 222 333333333333333333333 11 1 4444444 111 1 11 222
lowQualScore : 0 3 0 5 2 2 11 4 1 222222222222222 4 8888 222222 4 66 888 5 0 333 444 33 0 6 11 7 99 999999999999999999999 22 0 44 2222222 0 0 1 1 444 77 5 0 333 7 1 6 5 11 1 6 0 6 888
lowQualScore : . . . . . . .. . . ............... . .... ...... . .. ... . . ... ... .. . . .. . .. ..................... .. . .. ....... . . . . ... .. . . ... . . . . .. . . . . ...
lowQualScore : 1 0 7 1 5 5 99 0 1 777777777777777 4 9999 888888 4 99 888 0 0 888 444 33 7 7 77 5 22 888888888888888888888 55 0 22 8888888 2 2 2 0 000 22 6 8 888 3 0 7 5 00 0 7 7 7 000
consensus : GTGCGTTCAGAGTACTACCGTTGGTTACCATCGGCAGAATAT-TTTACCATCGG---A------T----AT-GACAA----TGGTAC------C-AAT--G---T-T-TGC---CAA---TAAAATTTTCTGTTTACGAC-GTAATCCAAAATGGCGGGCATCGTGTCCACACTGAGAACGCTTGAACAGATTTTG--TATCACAGCG----TGATCGTGA---TCA-ACTGAAGAC-ATTTT-AGATATNTTTTG--TT---AAACATGTCCCTGGACAGATGGAAATGAGTTTTTAAAACATCAANTGTAT---ATGATGGCAGAGTGATCACTCACTTTCTAGCCATTTCGTCAGAGTNCGCGTAAGTTTTGCAAGGGAAAATACTATTTTCGCTAGCCAAGAGCTNACTTCACTACCCATTTTATGGACCAGAAACCCTTGGCTAGCGAAAATATTGAGAAAATAGTCTTANAGTATGAATGTGTCTTTTCGACATTTCATGAT-TAACTGATCATCCAGTGGTATACCAA
Reference ( family-3529 ) : GTGCGTTCAGAGTACTACCGTTGGTTACCATCGGCAGAATAT-TTTACCATCGG---A------T----AT-GACAA----TGGTAC------C-AAT--G---T-T-TGC---CAA---TAAAATTTTCTGTTTACGAC-GTAATCCAAAATGGCGGGCATCGTGTCCACACTGAGAACGNTTNAACAGATTTTG--TATCACAGCG----TGATCGTGA---TCA-ACTGAAGAC-ATTTT-AGATATNTTTTG--TT---AAACATGTCCCTGGACAGATGGAAATGAGTTTTTAAAACATCAANTGTAT---ATGATGGCAGAGTGATCACTCACTTTCTAGCCATTTCGTCAGAGTNCGCGTAAGTTTTGCAAGGGAAAATACTATTTTCGCTAGCCAAGAGCTNACTTCACTACCCATTTTATGGACCAGAAACCCTTGGCTAGCGAAAATATTGAGAAAATAGTCTTANAGTATGAATGTGTCTTTTCGACATTTCATGAT-TAACTGATCATCCAGTGGTATACCAA
gi|1 : GTGCGTTCCGCGTACTAACGTTGGTTACCATCGGCAGAATTT-TTTACCATTGGT--A------TT---AT-GGCGT----TGGTACATGTACC-AAT--GACGT-T-TGC---CAA---TAACATTTTCTGTTGACGAC-GTAATTCAAAGTGGCGGCCATCGTGTCCACACTGAGAACACT-AAACCGATTTTG--TACCACAGCAAGTATGATCATGA---TCA-ACTGAAGAC-ATTTTTAGATATGTTTTG--CTTTAAAACATGTCCCTGGACAGATAGAAATGAGTTTTTAAAACATTAAATGTAT---ATGATGGCAAAGTGATCACTCACTT--TAGCCATTCCGTCAGAGTATGCGTAAGTTTTGCAAGGAAAAGTACTATCTTTGCTAACCAAGAGTTGACTTCACTTCCCA-TTTATGGACCAAAAACCCTTAGCTAGCGAAAATATGGAGAAAATAATCTTAGA-TATGAATGTATCTTTTTGACATTTCATGA--TAACTAATCATCCAGTGGTACACCAA
gi|10 : TTTATTTATGAC-GCAATCCAAAATGGTGGACATCGTGTCCACACTGAGAACAATTGAACAGATTTTG--TATCACAGC
gi|11 : ctgttagcgttggtaacTTTGACATTTCATGGT--AACTGATCATCCAGTGGTATACCAAttttcg
gi|13 : tggagaataataagtaataaacagtaattagaaatagctcttaaaaA-ATTGAAGAA-GTTTT-AGATATATTTTGCTTT---AAATATGTCACTGAACAGGTAGAAGTGAGTTTtggta
gi|14 : AT---ATGATAGCAGAGTGATC-TTCACTTTCTAGTCATTTCGTCAAACTTCTTGTAAGTTTTG
gi|15 : cACTTTCGCTAGCCAAGAGCTTACGT-ACGATCCA
gi|16 : agtcAACTTTATTCAATGATGGCAGAGTGATCA------TTCTAGCCATTTCGTCAGAagtacgcttctctataca
gi|17 : tATAT-TTTACCATTGG----------T----AT-GACAA----TGGTAC------C-Act
gi|18 : TGGTTACCATCGGCAGAATTG-TTTACCAT
gi|2 : A-ACTGAAGACCATTTT-AGATATCTTTTGAATT---AAACATATCTCTGGACAGATGGAAATGAGTATTTAAAACACCAAGTGTAT---ATGATGGCAGAGTAAACACTCAC--TCTAGCCATTCCGTCCGAGTACGCATGAAATTTCCAAGAGAAAATACT
gi|2 : GCTAAAATATTGTAACACT--TATTAAAGTATGAATGTGTCTTTTCGACATTT--TGATCTAACTGATCATCCAGTGGTATtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacagtaattaaaatatattctaaacgcaatttccggctaaaatattgtaacacttattaaagtatgaatgtgtcttttcgacattttgatctaactgatcatccagtggtat
gi|3 : aactgaagaccattttagatatcttttgaattaaacatatctctggacagatggaaatgagtatttaaaacaccaagtgtatatgatggcagagtaaacactcactctagccattccgtccgagtacgcatgaaatttccaagagaaaatacttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacagtaattaaaatatattctaaacgcaatttccgCAAAATGATAGGTATCGTGTCCACACTGTGAACATATGAACATATTTTG--TATGATAGCT----TG-TCGT-----------TGAA----ATTTT-AGATATT----------------ATATCCCTGGACAGATGGAATTAAGTTTTTAAAACATCAATTGTAT---ATGATAGCTGAGTGATCATTCACTTTCTAGTCATTTCGTCAAAGTTATTGTAAGTTTTGAAACGGAGAATAC-ATTTTCGCTAGCCAGGAGCTCACTTCACTACCCATTTTATAGACCAGAAACCCTTGGCTAGCGAAAATATTGAGAACAAAGGCTTACAGAATG
gi|4 : GTGCGTTCAGAGTACTGCAGTTGGTTACTGTCGACAGAATAT-TTTAGCATTGG----------T----AA-GACAA----TGGTAC------C-AAT--G---T-T-TGC---CAA---TAAAATTTTCTGTTt
gi|4 : CAGAG----ACC-TAGGTTGCC-T--GCAGAA-ATGTTTACCAACAG---AAAATTTT----ATTGGCAAACATTGGTAC------C-ATT--G---TCT-TAC---CAATGCTAAAATATTCTGT---CGACAGTAA-CCAAggtaaacatttctgcaggcaacctaggtctctgttagcgttggtaactttatttatggcgtaatacaaaatagcgggcatcgtttccccactgagaatgcttcaatagattttgtatcacaggtgatttgaaattcacactggagatgaatttccgggtgtg
gi|4 : gtgcgttcagagtactgcagTTTATTTATGGC-GTAATACAAAATAGCGGGCATCGTTTCCCCACTGAGAATGCTTCAATAGATTTTG--TATCACAG-G----TGATT-TGAAATTCACACTGGAGAttagcgttggtaactttatttatggcgtaatacaaaatagcgggcatcgtttccccactgagaatgcttcaatagattttgtatcacaggtgatttgaaattcacactggagatgaatttccgggtgtg
gi|5 : gtgcgttcagagtactgcagttggttactgtcgacagaatattttagcattggtaagacaatggtaccaatgtttgccaataaaattttctgttggtaaacatttctgcaggcaacctaggtctctgttagcgttggtaacCGTTCATAGTACTGTCGTTAGTTACCATCGGCAGAATCT-TTTACCATTGG----------T----AT-GACAA----TGGTAC------C-AAT--G---T-T-TGG---CAT---CAACATTTTCTGTTtgaatttccgggtgtg
gi|5 : CAGAGCTCTA-----GGTTGCC-T--GCAGAAAAC-TTTACCAACAGAAAA------TGTTGAT-GCCAAACATTGGTAC------C-ATT--G---T-CATAC---CAATGGTAAAAGATTCTGggtaaagttttctgcaggcaacctagagctctgttagcgttggtaactttatctatcacgtcatccaaaacggcgggcatcttgcccacatcgagagtttttttgtttgtcacacacatcgagagtttttgtgtcacaacaatccgtttact
gi|5 : cgttcatagtactgtcgttagttaccatcggTTTATCTATCAC-GTCATCCAAAACGGCGGGCATCTTGCCCACATCGAGA--GTTT-------TTTTGTTTGTCACAttagcgttggtaactttatctatcacgtcatccaaaacggcgggcatcttgcccacatcgagagtttttttgtttgtcacacacatcgagagtttttgtgtcacaacaatccgtttact
gi|6 : cgttcatagtactgtcgttagttaccatcggcagaatcttttaccattggtatgacaatggtaccaatgtttggcatcaacattttctgttggtaaagttttctgcaggcaacctagagctctgttagcgttggtaac------T----AT-GGCAA----TGGTAC------C-AAT--G---T-T-TGC---CAA---TAAAATTTTCTGTTcacatcgagagtttttgtgtcacaacaatccgtttact
gi|6 : gTTTATTTATGAC-GTAATCCAAAATGGAGGGCATCGTGTCCACACTGGGAACACTTAACCAGAATTTG--TATCACAGCggaaaacatttctgcagacaatctaaagctctgttagcgttggtaactttatttatgacgtaatccaaaatggagggcatcgtgtccacactgggaacacttaaccagaatttgtatcacagctattcattgaca
gi|7 : gtatggcaatggtaccaatgtttgccaataaaattttctgttggaaaacatttctgcagacaatctaaagctctgttagcgttggtaacCAGAGTACTACCGTTGGTTACCATCGGCA-AGTAT-tattcattgaca
gi|8 : cTAT-TTTAC-ATCGG---A------T-----T-GACAA----TGGTAC------CAAATGAG---T-T-TGCA--CAA---TAAgacactggataaacatttctacccgggatttctacagacaacctaaggctctgttagcgttgataactttatttatacc
gi|9 : GTGCGTTCAGAGTACTACCGTTGGTTACCATCGGCA-----------------G---G------T----AT-GACAC----TGGTAC------C-AAT--T---T-TCTGCAGACAACC-TAAAG--CTCTGTTggacttgtcgaaaacatgttgcagacaacatagagctcttattaacgtattaggtaactttattatg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AATAAAATTTACCGATATTAAACATTTCTACAGGCAATCTATTTGCTCTGTTAGCGTTGTTAACTTTATTCAA