lowQualScore : 11111111 1111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333 1 1 888888888888888 2 1 22 3333333333333333333333333333 1 3333333333333333 222222 33333333 1 111 1 5555 3333333333 111 1 11 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 1 1 22222 111 11111 11111111 1111 1 222222 2222222
lowQualScore : 6 6 6 66666666 1 5 6 888888888888888 0 4 5 33 6 2 8888888888888888888888888888 5 3 3333333333333333 555555 44444444 9 9 7 0 777 2 5 3333 3 0 3333333333 8 444 0 11 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 6 888 3 0 66 22222 1 555 44444 66666666 77 1111 2 3 6 8 5 1 666666 6666666
lowQualScore : . . . ........ . . . ............... . . . .. . . ............................ . . ................ ...... ........ . . . . ... . . .... . . .......... . ... . .. ........................................................................................................................................................................................ . . ... . . .. ..... . ... ..... ........ .. .... . . . . . . ...... .......
lowQualScore : 0 0 0 00000000 5 0 0 000000000000000 0 0 5 00 0 5 0000000000000000000000000000 0 0 0000000000000000 555555 88888888 8 0 0 7 555 0 0 8888 0 8 2222222222 0 000 0 88 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 4 7 333 5 8 00 00000 7 777 33333 44444444 99 0000 7 7 0 7 9 0 555555 3333333
consensus : NNNNNNNTACAGACAGATGGGCAGATAGACAAAT-------GGACTGNTGATTTCATTACACTCTCGCCTGCCGCCCCCCAAACCTNATGCAGTAGTCTCTGTGAGANAACGTTTTACATTTATANANATNANTACAAAGTCCGTANAGTTACANANAACNNTCG-TAAAA-TA---AAAA---T-NNCCATAACTTCTTTGAATGTT---AAAAAATCTCGC-ATNAAAATGACA-GG------TGCACA-A---CTTCAT-TAT-------------ATAC-----T--------C--AT-------------AAAGTTTAAAT-NAAATCTGTTTTATC-ATCGGTTT-TTNAAGATANACTCTGGACAATG---AC-A----------------TCA-A--------CC--TCAAAT-GGAA-A-AAATA------ACTCTA----TAACTTCCTTGAATG-TT---AAAAAATCTCGATNAAAATG----GCAGGTGCACA---ACT-----TCATTAT--T--C-AT--ATAANATATACACAAAGTTTNAATCA----AATCTG-T-T-ATCGGTGTTAAAGATAT
Reference ( gi|1 ) : TCATTTGTACAGACAAATGGGCAGACAGGCAAATTGATTGGAGACTGATGAGTCCATTATAC---CGCTT-------CCTAAA-TTAATGCAGTAGTCTCAATAAAAGA-------ACA-----GAAAATGACTGC-AACTCCATAAAGTT-TAAAGAACACTTA-TAAAA-TA---AAAA---T-CTCCATGACTACCTTGAATGTT---AAAGACTCTCACAATAAAAATGACA-GA------TGCACA-A---CTTGAT-TAT-------------AT-------T--------C--AT-------------AAAGTTTGAAT-TAAATATGTTTTAT--ATTGGTTT-TTCAAGATAAACTCTGGACAATG---AC-A----------------TCA-A--------CC--TCAAATAGGAA-A-AAGTA------ACTCT-----TAACTTCCTTGAATG-TT---AAAAACTCTCCATCAAAATG----GCAGGTGCACA---ACT-----TTATTAT--T--C-AT--ATGAGGTATGCAGAGAATTTTAATCA----TATCTG-T-T-AGCAGTGTTAAAGATATCC
gi|2 : TACAGACAGATGGGCAGATAGACAAAT-------GGACTGTTGATTTCATTATAC---TCTCT-------CTCAAA-CTTATGCAGTAGTCTTTGTAAGATA-------ACATTTATACAAATCAAT---AAGTCCGTAAAGTT-CACATAACTATCAGTAAAA-TG---AAAA---TACACC-TAACGTCCTTGAATGTT---AAAGAATCT--CAATAAAAATGATA-TACATGTGTGCGAATA---CTCTAT-TAT-------------AG-------T--------CT-ATACATGTACACAAAAAAGTTTAAATACAAA------TTATCCATTCATTTACTC----T--GCCCTGGGCAATGACAAC-A----------------TGA-A--------CCCTTCACAAAGGAA-ATAAATA------TC-CC-----CAACTCTATTGAGTG-CTA--AAAAATTCTCAAGAAAAATA----GC
gi|8 : tcacatcGGTGATTTCATTACACTCTCGCTTGCCGCCCTCTAAACTTAA-ACAGTAGTCTCTGTGAGAGAACGTTTTACA-----AAATATAAC-ACAAAGTCCATACAGTTATAAAAGTAATCTG-TAAAATTA---AAAA---T-GCCCA
gi|4 : gacacAACCCTCA--AAAA--A---AAAA---T-C--CTTCACTTCTTAGAATGTT---AAAAAATCTT-C-ATCTAAATACCA-GG------TGCACA-ACTTCTTGATCCAT-------------ATACGATAAT--------C--AC-------------AAGGTTTCAAT-AAGATCTGTT---T--ATTGG-TG-TGAAAGACATACTATGAACAAatcgt
gi|3 : taaagacctccAAAA-TATTCAAAACTTT-ATTCATAACTTCTATGAATGTTTAAAAAAAATCTTG--ATCAAAATAGCA-AG------TACACA-A---CTTCAT---T-------------AC-------T--------CAAAT-------------AAGATATATAC-AAAGTCTGTT---C--ATCAG-TG-TTAAAGATATACCCTGGACAA--------A----------------TCATA--------TC--TCattgtatctgagaacagacacacagacaaggtgactgaaacacaccttgtaaac
gi|9 : catacacatttgatatactgtggataatgacagcaaaacacctcccccatatggaaATGTT---AAAAAATCTCA--ATAAAAATGACATGA-------GCATA-A---CTTCAT-TAT-------------ATACA----TTATATATGC--AT-------------AAAGTTAAAAT-CAA-----TTTTGT--CT--ATTT-TTTAAAATAAACTTTAGACAATG---AC-tgagtggacagaaagacagatggacaaggtgattccagtat
gi|7 : CA-AG------TGCACA-A---TTTCAT-TATTCACATACGAAATAT-------A--------C--AC-------------AAAGTTTTAAC-TAAATCTG----ATC-ATCAG-TT-TTAAAGATAGACTCCGAATAA
gi|5 : tatCAAGACAAACTCTGGATAATG---AC-AGCATAACAACCACCACTCA-A--------TT--TAAAATGGGGATA-AATTA--------TCTA----CAATTTCCTTGAATGTTT---AAAAAGTCTCAATC----TG------AGGTA-ACAG--ACTCTTCCTTACTAT--T--T-AT--GTAAGATATACACAAAGTCTCAATCA----ATTCTG-TAC-ATCGGTGTTCAAGGTATattatgtctttggatggacagacaaacaggtgattctagaatacccacttt
gi|3 : gaatacataataGATATACTGTGGATAATG---AC-A----------------GCA-AAACACCTCCC--CCATAT-GGAA-A-AAATATTCAAAACTTTATTCATAACTTCTATGAATG-TTTAAAAAAAATCTTGATCAAAATA----GCAAGTACACA---ACT-----TCATTAC--T--C-AA--ATAAGATATATACAAA---------------GTCTG-T-TCATCAGTGTTAAAGATAT
gi|2 : catacacatttATA---ACTA----------------TCA-G------------TAAAAT--GAA-A-A--TA-------CACC-----TAACGTCCTTGAATG-TT---AAAGAATCTCAATAAAAATGATATACATGTGTGCGAATACT-----CTATTATAGT--CTAT--AC-ATGTACACAAAAAAGTTTAAaccctggacaaatcatatctctgagtggacagaaagacagatggacaaggtgattccagtat
gi|4 : tcacatctacagacagatgggcagatagacaaatggactgttgatttcattatactctctctcaaacttatgcagtagtctttgtaagataacatttatacaaatcaataagtccgtaaagttcacCA-A--------CCC-TCAAA----AA-A-AA--A------ATCCT-----TCACTTCTTAGAATG-TT---AAAAAATCTTCATCTAAATA----CCAGGTGCACA---ACT-----TCTTGAT--C--C-AT--ATACGATAATCACAAGGTTTCAATAA----GATCTGTT-T-ATTGGTGTGAAAGACATatacaaattatccattcatttactctgccctgggcaatgacaacatgaacccttcacaaaggaaataaatatccccaactctattgagtgctaaaaaattctcaagaaaaatagc
gi|9 : taaagacctcATG-TT---AAAAAATCTCAATAAAAATG----ACATGAGCATA---ACT-----TCATTAT--A--T-AC--ATTATATATGCATAAAGTTAAAATCAATTTTGTCTA-T-T-actatgaacaaattgtatctgagaacagacacacagacaaggtgactgaaacacaccttgtaaac
gi|7 : CAAGTGCACA---ATT-----TCATTAT--TCAC-AT--ACGAAATATACACAAAGTTTTAACTA----AATCTGAT-C-ATCAGTTTTAAAGATAttttaaaataaactttagacaatgac
gi|13 : tatAGGTGCATA---ACA-----TTATTA------C-ATTGATAATATTTGCACAAAGTTTGGATCA----AATCTG-T-TCATCAGTgactccgaataaattatgtctttggatggacagacaaacaggtgattctagaatacccacttt
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): ACATTTTCATTACTCATCATCTTCATGCAACATATTACATAAAGTTTTAAAATTGGTGTTAAAGATATAATCTGGATAAATTACATCTATGGACAAACAGATGGACAAGATGATTCCAGACTGGAATTTCCAGTGTAGTATACCCCTTTGCTTGTGGGGGTGTA
Unaligned ( gi|10 ): CATATCCACAGCCAGACACAGGCAGACTGACCAACAAATGGACATAACCTATGCATTACACCCTCTCCTTGTTTTTATGCACTATTCTTTGTAAGATAATAT
Unaligned ( gi|11 ): ATGATTTTTGAAATATAATCTGGACAACAAAACATCATGTCTGTGACTGGATAGATGGACATGGTGATCCCATAATAC
Unaligned ( gi|12 ): AGAACATGCCCGGGACAAAACATCAATCATGTCTACAGACAGACAGACGGACATTGCTGATTCCATATACCCC
Unaligned ( gi|14 ): ATCATGTCCACAGACAAACGGACATGCTGATTCCAACATACCCC
Unaligned ( gi|15 ): GTCTGCAGACAGACATACGGACATACTGATTTCAATATCCTCCC
Unaligned ( gi|16 ): TGTATACAGACAAACGGACATGCTGATTCCAATATACCC
Unaligned ( gi|17 ): ATCATGTCTACAGACAGACGGACATGCTGATTCCAATA
Alignments
lowQualScore : 1111111111111
lowQualScore : 1111 2222222 11 111 8888888888888888888 0000000000000 11111111 2222 2 1 111 111 111 3333 2222 111 888888888888888888888888888888 555555555555555555555 111 555555555555555555555555555555555 11 1 44444444444444444 111 111 111 22222
lowQualScore : 3 7 3 7777 6666666 66 1 111 0 4 1111111111111111111 1 3 2 1 4444444444444 1 1 1 44444444 0 1 9999 1 22 6 0 777 777 222 1 777 0000 1 1111 6 777 0 3 111111111111111111111111111111 1 111111111111111111111 1 0 1 111 999999999999999999999999999999999 666 00 3 0 22222222222222222 1 8 444 8 6 77 5 111 000 77 5 77 77 1 5 3 8888 11111
lowQualScore : . . . .... ....... .. . ... . . ................... . . . . ............. . . . ........ . . .... . .. . . ... ... ... . ... .... . .... . ... . . .............................. . ..................... . . . ... ................................. ... .. . . ................. . . ... . . .. . ... ... .. . .. .. . . . .... .....
lowQualScore : 7 3 0 0000 0000000 88 0 777 7 2 2222222222222222222 0 2 0 0 3333333333333 0 0 0 77777777 7 0 3333 0 00 7 0 555 555 222 0 555 5555 0 2222 5 555 2 2 555555555555555555555555555555 0 222222222222222222222 0 8 0 777 666666666666666666666666666666666 888 22 3 8 66666666666666666 4 0 000 0 4 00 0 777 000 99 7 99 99 0 7 0 1111 77777
consensus : NNNNNNNTACAGACANATGGGCAGACAGAC----AAAC-------GGACATGNTGATTT---CATTATACTCTC-CCT--CGCCTCCTAAACTTNATGCAGTAGTCTCTGTAAGANAACG------A-----AAAAATNACTACAAAGTCCGTAAAGTT-TA-ANAACAATC-GTAAAA-TA---AAAA---TACCCATAACTTCCTTGAATGTT---AAAGAATCTCG-A-TAAAAATG----ACANGTGCGCA---ACTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAATNAAAT-TGTTTTATCATCGGTTT-TTTAAGATANACTCTGGACAATG---ACA----------------TCA-A--------CC--TC-A-AAT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATCAAAATAGCAGGTGCACAA---CTTC---ATTAT--T-CAT--ATA--AGATAT-ACACAAAGTTTTAATCAAATCTG-T-T-ATCGGTGTTAAAGATAT
Reference ( family-35 ) : NNNNNNNTACAGACAGATGGGCAGATAGAC----AAAT-------GGAC-TGNTGATTT---CATTACACTCTCGCCTGCCGCCCCCCAAACCTNATGCAGTAGTCTCTGTGAGANAACGTTTTACATTTATANANATNANTACAAAGTCCGTANAGTTACANANAACNNTC-GTAAAA-TA---AAAA---TNNCCATAACTTCTTTGAATGTT---AAAAAATCTCGCA-TNAAAATG----ACAGGTGCACA---ACTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAATNAAATCTGTTTTATCATCGGTTT-TTNAAGATANACTCTGGACAATG---ACA----------------TCA-A--------CC--TC-A-AAT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATNAAAATGGCAGGTGCACAA---CTTC---ATTAT--T-CAT--ATA--ANATAT-ACACAAAGTTTNAATCAAATCTG-T-T-ATCGGTGTTAAAGATAT
gi|1 : TACAGACAAATGGGCAGACAGGC----AAATTGATTGGAGAC-TGATGAGTC---CATTATAC----------CGCTTCCTAAAT-TAATGCAGTAGTCTCAATAAAAGAACA------------GAAAATGACTGCAAC-TCCATAAAGTT-TAAAGAACACTT-ATAAAA-TA---AAAA---TCTCCATGACTACCTTGAATGTT---AAAGACTCTCACAATAAAAATG----ACAGATGCACA---ACTTGATTATA---T---T--------C--AT---------AAAGTTTGAATTAAATATGTTTTAT-ATTGGTTT-TTCAAGATAAACTCTGGACAATG---ACA----------------TCA-A--------CC--TC-A-AATAGGAAA-AAGTA------ACTCT-T----AACTTCCTTGAATG-TT---AAAAAC-TCTCCATCAAAATGGCAGGTGCACAA---CTTT---ATTAT--T-CAT--ATG--AGGTAT-GCAGAGAATTTTAATCATATCTG-T-T-AGCAGTGTTAAAGATAT
gi|10 : tcatttgCAGACACA--GGCAGACTGACCAACAAAT-------GGAC---ATAACCTATGCATTACACCCTCTCCT--TGT--------TTTTATGCACTATTCTTTGTAAGATAAcc
gi|13 : catatccacagcAGGTGCATAA---C------ATTAT--TACATTGATA--ATATTT-GCACAAAGTTTGGATCAAATCTG-T-TCATCAGTtat
gi|15 : tatctGCAGACAGAC----ATAC-------GGACATACTGATTT---CAATATCCTCCCtt
gi|16 : gtctACAGAC----AAAC-------GGACATGCTGATTC---CAATATACCC
gi|2 : tgtatTACAGACAGATGGGCAGATAGAC----AAAT-------GGAC-TGTTGATTT---CATTATACTCTC----------TCTCAAAC-TTATGCAGTAGTCTTTGTAAGATAAC-------ATTTATACAAATCAATA---AGTCCGTAAAGTT-CACATAACTATCAGTAAAA-TG---AAAA---TACACCTAACGTCCTTGAATGTT---AAAGAATCTCA-A-TAAAAATGATATACATGTGTGCGAATACTCTATTATAGTCTAT-A--------C--ATGTACACAAAAAAGTTTAAATACAA--------ATTATCCATTCATTTA--CTCTGCCCTGGGCAATGACAACA----------------TGA-A--------CCCTTC-ACAAA-GGAAATAAATA--------TCCCC----AACTCTATTGAGTG-CT---AAAAAATTCTCAAGAAAAATAGC
gi|3 : tcacatcGATATACTGTGGATAATG---ACA----------------GCA-AAACACCTCCC--CC-A-TAT-GGAAA-AAATATTCAAAACTTTATTCATAACTTCTATGAATG-TTTAAAAAAAA-TCTTGATCAAAATAGCAAGTACACAA---CTTC---ATTAC--T-CAA--ATA--AGATAT-ATACAAAG-----------TCTG-T-TCATCAGTGTTAAAGATAT
gi|3 : catacacatttAAAA-TATTCAAAACTTTATTCATAACTTCTATGAATGTTTAAAAAAAATCTTG-A-TCAAAATA----GCAAGTACACA---ACTTCAT-------TAC-T--------CAAAT---------AAGATATATACAAAGTCTGT----TCATCAG-TG-TTAAAGATATACCCTGGACAA-------A----------------TCATA--------TC--TCTG-AGT-GGACA-GAAaccctggacaaatcatatctctgagtggacagaaagacagatggacaaggtgattccagtat
gi|4 : catacacatttgatatactgtggataatgacagcaaaacacctcccccatatggaaCA-A--------CCC-TC-A-AA-----AA-AAA-A------ATCCT-T----CACTTCTTAGAATG-TT---AAAAAA-TCTTCATCTAAATACCAGGTGCACAA---CTTC---TTGAT--C-CAT--ATA--CGATAA-TCACAAGGTTTCAATAAGATCTGTT-T-ATTGGTGTGAAAGACATagacagatggacaaggtgattccagtat
gi|5 : taaagacctcAAGACAAACTCTGGATAATG---ACAGCATAACAACCACCACTCA-A--------TT--TA-A-AAT-GGGGATAAATT------A-TCTAC----AATTTCCTTGAATGTTT---AAAAAG-TCTCAATC----TG--AGGTA-ACAGACTCTTCCTTACTAT--T-TAT--GTA--AGATAT-ACACAAAGTCTCAATCAATTCTG-TAC-ATCGGTGTTCAAGGTATactatgaacaaattgtatctgagaacagacacacagacaaggtgactgaaacacaccttgtaaac
gi|6 : gaatacataatacTC---ATCATCTT-CAT--GCA--ACATATTACATAAAGTTTTAA----A---------ATTGGTGTTAAAGATAT
gi|7 : acattttcattacCAAGTGCACAA---TTTC---ATTAT--T-CAC--ATACGAAATAT-ACACAAAGTTTTAACTAAATCTGAT-C-ATCAGTTTTAAAGATAaatctggataaattacatctatggacaaacagatggacaagatgattccagactggaatttccagtgtagtatacccctttgcttgtgggggtgta
gi|8 : tatGGTGATTT---CATTACACTCTCGCTTGCCGCCCTCTAAACTTAA-ACAGTAGTCTCTGTGAGAGAACGTTTTACA-----AAATATAAC-ACAAAGTCCATACAGTTATA-AAAGTAATCTGTAAAATTA---AAAA---TGCCCAgactccgaataaattatgtctttggatggacagacaaacaggtgattctagaatacccacttt
gi|9 : gacacATGTT---AAAAAATCTCA-A-TAAAAATG----ACATGAGCATA---ACTTCATTATA---TACATTATATATGC--AT---------AAAGTTAAAATCAA-----TTTTGTC-T--ATTT-TTTAAAATAAACTTTAGACAATG---ACatcgt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): ATGATTTTTGAAATATAATCTGGACAACAAAACATCATGTCTGTGACTGGATAGATGGACATGGTGATCCCATAATAC
Unaligned ( gi|12 ): AGAACATGCCCGGGACAAAACATCAATCATGTCTACAGACAGACAGACGGACATTGCTGATTCCATATACCCC
Unaligned ( gi|14 ): ATCATGTCCACAGACAAACGGACATGCTGATTCCAACATACCCC
Unaligned ( gi|17 ): ATCATGTCTACAGACAGACGGACATGCTGATTCCAATA
Alignments
lowQualScore : 1111 11111 1 444444444444 1 777777777 1111111 1111111 2 1 111 111 111 11 2222 111 888888888888888888888888888888 11 666666666666666666 111 555555555555555555555555555555555 11 1 44444444444444444 111 22222
lowQualScore : 1 7 0000 22222 8 1 2 0 6 888888888888 6 0 3 1 888888888 1 3333333 0 9999999 6 0 777 777 0 0 777 33 2 1111 1 2 777 0 3 111111111111111111111111111111 11 111111111111111111 3 1 0 1 111 999999999999999999999999999999999 666 00 3 0 22222222222222222 1 8 444 8 6 8 1 1 77 5 77 77 5 0 2 8888 1 11111
lowQualScore : . . .... ..... . . . . . ............ . . . . ......... . ....... . ....... . . ... ... . . ... .. . .... . . ... . . .............................. .. .................. . . . . ... ................................. ... .. . . ................. . . ... . . . . . .. . .. .. . . . .... . .....
lowQualScore : 0 3 6666 55555 9 0 0 6 5 777777777777 5 8 2 0 000000000 0 7777777 7 0000000 7 0 555 555 8 2 555 88 0 2222 0 0 555 2 2 555555555555555555555555555555 00 000000000000000000 5 2 8 0 777 666666666666666666666666666666666 888 22 3 8 66666666666666666 4 0 000 0 4 0 0 7 99 7 99 99 7 1 1 1111 4 77777
consensus : NNNNNNNTACAGACANATGGGCAGACAGAC----AAAC-----GGACA-TGCTGATTCCANTATACCCTC-CT---CGCCTCCTAAACTTAATGCAGTAGTCTCTGTAAGANAACGTTT---A-AAAAATNACTACAAAGTCCGTAAAGTT-TA-AA-AACAATC-GTAAAA-TA---AAAA---TACCCATAACTTCCTTGAATGTT---AAAGAATCT--CGATAAAAATG----ACANGTGCGCA---ACTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAAT-CAAAT-TGTTTTGTCATCGGTTNTTTAAGATANACTCTGGACAATG---ACA----------------TCA-A--------CC--TC-A-AAT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATC-AAAATAGCAGGTGCACAACTTCATTAT--T-CAT--ATA--AGATAT-ACACAAAGTTTTAATCAAATCTG-T-T-ATCGGTGTTAAAGATAT
Reference ( family-35 ) : NNNNNNNTACAGACANATGGGCAGACAGAC----AAAC-----GGACA-TGNTGATTTCATTATACTCTCCCT---CGCCTCCTAAACTTNATGCAGTAGTCTCTGTAAGANAACG------A-AAAAATNACTACAAAGTCCGTAAAGTT-TA-AN-AACAATC-GTAAAA-TA---AAAA---TACCCATAACTTCCTTGAATGTT---AAAGAATCT--CGATAAAAATG----ACANGTGCGCA---ACTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAAT-NAAAT-TGTTTTATCATCGGTTTTTTAAGATANACTCTGGACAATG---ACA----------------TCA-A--------CC--TC-A-AAT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATC-AAAATAGCAGGTGCACAACTTCATTAT--T-CAT--ATA--AGATAT-ACACAAAGTTTTAATCAAATCTG-T-T-ATCGGTGTTAAAGATAT
gi|1 : TACAGACAAATGGGCAGACAGGC----AAATTGATTGGAGACTGATGAGTCCATTATAC----------CGCTTCCTAAA-TTAATGCAGTAGTCTCAATAAAAGAAC-------A-GAAAATGACTGCAAC-TCCATAAAGTT-TA-AAGAACACTT-ATAAAA-TA---AAAA---TCTCCATGACTACCTTGAATGTT---AAAGACTCTCACAATAAAAATG----ACAGATGCACA---ACTTGATTATA---T---T--------C--AT---------AAAGTTTGAAT-TAAATATGTTTTAT-ATTGGTTTTTCAAGATAAACTCTGGACAATG---ACA----------------TCA-A--------CC--TC-A-AATAGGAAA-AAGTA------ACTCT-T----AACTTCCTTGAATG-TT---AAAAAC-TCTCCATC-AAAATGGCAGGTGCACAACTTTATTAT--T-CAT--ATG--AGGTAT-GCAGAGAATTTTAATCATATCTG-T-T-AGCAGTGTTAAAGATAT
gi|10 : tcatttgCAGACACA--GGCAGACTGACCAACAAAT-----GGACA-TAACCTATGCATTACACCCTC----------TCCTTGTTTTTATGCACTATTCTTTGTAAGATAAcc
gi|12 : catatccacagcCAGACAGAC----AGAC-----GGACATTGCTGATTCCA-TATACCCtat
gi|13 : agaacatgcccgggacaaaacatcaatcatgtctaAGGTGCATAAC---ATTAT--TACATTGATA--ATATTT-GCACAAAGTTTGGATCAAATCTG-T-TCATCAGTc
gi|14 : tatctACAGAC----AAAC-----GGACA-TGCTGATTCCAACATACCCtt
gi|15 : atcatgtccGCAGACAGAC----ATAC-----GGACA-TACTGATTTCA--ATATCCTCCCc
gi|16 : gtctACAGAC----AAAC-----GGACA-TGCTGATTCCAATATACCC
gi|17 : tgtatACAGAC----AGAC-----GGACA-TGCTGATTCCAATA
gi|2 : atcatgtctTACAGACAGATGGGCAGATAGAC----AAAT-----GGAC--TGTTGATTTCATTATACTCTCTCT---C-------AAACTT-ATGCAGTAGTCTTTGTAAGATAACATTT---ATACAAATCAATA---AGTCCGTAAAGTT-CACAT-AACTATCAGTAAAA-TG---AAAA---TACACCTAACGTCCTTGAATGTT---AAAGAATCT--CAATAAAAATGATATACATGTGTGCGAATACTCTATTATAGTCTAT-A--------C--ATGTACACAAAAAAGTTTAAATACAAAT-TAT----CCAT---TCATTTA--CTCTGCCCTGGGCAATGACAACA----------------TGA-A--------CCCTTC-ACAAA-GGAAATAAATA--------TCCCC----AACTCTATTGAGTG-CT---AAAAAATTCTCAAGA-AAAATAGC
gi|3 : tcacatcGATATACTGTGGATAATG---ACA----------------GCA-AAACACCTCCC--CC-A-TAT-GGAAA-AAATATTCAAAACTTTATTCATAACTTCTATGAATG-TTTAAAAAAAA-TCTTGATC-AAAATAGCAAGTACACAACTTCATTAC--T-CAA--ATA--AGATAT-ATACAAAGT-----------CTG-T-TCATCAGTGTTAAAGATAT
gi|3 : catacacatttAAAA-TATTCAAAACTTTATTCATAACTTCTATGAATGTTTAAAAAAAATCT--TGATCAAAATA----GCAAGTACACA---ACTTCAT-------TAC-T--------CAAAT---------AAGATATATAC-AAAGTCTGT----TCATCAG-TGTTAAAGATATACCCTGGACAA-------A----------------TCATA--------TC--TCTG-AGT-GGACA-GAAaccctggacaaatcatatctctgagtggacagaaagacagatggacaaggtgattccagtat
gi|4 : catacacatttgatatactgtggataatgacagcaaaacacctcccccatatggaaCA-A--------CCC-TC-A-AA-----AA-AAA-A------ATCCT-T----CACTTCTTAGAATG-TT---AAAAAA-TCTTCATC-TAAATACCAGGTGCACAACTTCTTGAT--C-CAT--ATA--CGATAA-TCACAAGGTTTCAATAAGATCTGTT-T-ATTGGTGTGAAAGACATagacagatggacaaggtgattccagtat
gi|5 : taaagacctcAAGACAAACTCTGGATAATG---ACAGCATAACAACCACCACTCA-A--------TT--TA-A-AAT-GGGGATAAATT------A-TCTAC----AATTTCCTTGAATGTTT---AAAAAG-TCTCAATCTGAGGTAACAG--ACTCTTCCTTACTAT--T-TAT--GTA--AGATAT-ACACAAAGTCTCAATCAATTCTG-TAC-ATCGGTGTTCAAGGTATactatgaacaaattgtatctgagaacagacacacagacaaggtgactgaaacacaccttgtaaac
gi|6 : gaatacataatacTCATCATCTT-CAT--GCA--ACATATTACATAAAGTTTTAA----A---------ATTGGTGTTAAAGATAT
gi|7 : acattttcattacTATCAAGTGCACAATTTCATTAT--T-CAC--ATACGAAATAT-ACACAAAGTTTTAACTAAATCTGAT-C-ATCAGTTTTAAAGATAaatctggataaattacatctatggacaaacagatggacaagatgattccagactggaatttccagtgtagtatacccctttgcttgtgggggtgta
gi|8 : GACA-CGGTGATTTCATTACACTCTCGCTTGCCGCCCTCTAAACTTAA-ACAGTAGTCTCTGTGAGAGAACGTTTTACA-AAATATAAC-ACAAAGTCCATACAGTTATA-AA-AGTAATCTGTAAAATTA---AAAA---TGCCCAgactccgaataaattatgtctttggatggacagacaaacaggtgattctagaatacccacttt
gi|9 : ATGTT---AAAAAATCT--CAATAAAAATG----ACATGAGCATA---ACTTCATTATA---TACATTATATATGC--AT---------AAAGTTAAAAT-CAA-----TTTTGTC-T--ATTTTTTAAAATAAACTTTAGACAATG---ACatcgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): ATGATTTTTGAAATATAATCTGGACAACAAAACATCATGTCTGTGACTGGATAGATGGACATGGTGATCCCATAATAC
Alignments
lowQualScore : 11111 6666666666 333333333 11 1 2 2 1 111 111 111 11 2222 111 888888888888888888888888888888 11 555555555555555555 111 555555555555555555555555555555555 11 1 44444444444444444 111 22222
lowQualScore : 1 0 8888 00000 7 555 4 9999999999 6 66 1 666666666 1 99 6 0 3 6 6 0 777 777 0 0 777 33 2 1111 1 2 777 0 3 111111111111111111111111111111 33 000000000000000000 1 1 0 1 111 999999999999999999999999999999999 666 00 3 0 22222222222222222 1 8 444 8 6 8 1 1 77 5 77 77 5 0 2 8888 1 11111
lowQualScore : . . .... ..... . ... . .......... . .. . ......... . .. . . . . . . ... ... . . ... .. . .... . . ... . . .............................. .. .................. . . . . ... ................................. ... .. . . ................. . . ... . . . . . .. . .. .. . . . .... . .....
lowQualScore : 0 8 5555 00000 3 555 5 8888888888 5 55 0 777777777 0 77 7 7 3 7 7 0 555 555 8 2 555 88 0 2222 0 0 555 2 2 555555555555555555555555555555 22 888888888888888888 0 2 8 0 777 666666666666666666666666666666666 888 22 3 8 66666666666666666 4 0 000 0 4 0 0 7 99 7 99 99 7 1 1 1111 4 77777
consensus : NNNNNNNTACAGACANATGGGCAGACAGAC----AAAC-----GGACA-TG--CTGATTCCANTATACCCTC-C-----GCCTCCTAAACTTAATGCAGTAGTCTCTGTAAGANAACGTTT---A-AAAAATNACTGCAAAGTCCGTAAAGTT-TAAA-AACAATC-GTAAAA-TA---AAAA---TACCCATAACTTCCTTGAATGTT---AAAGAATCT--CGATAAAAATG----ACANGTGCGCA---ACTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAAT-CAAAT-TGTTTTNTCATCGGTTNTTTAAGATANACTCTGGACAATG---ACA----------------TCA-A--------CC--TC-A-AAT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATC-AAAATAGCAGGTGCACAACTTCATTAT--T-CAT--ATA--AGATAT-ACACAAAGTTTTAATCAAATCTG-T-T-ATCGGTGTTAAAGATAT
Reference ( family-35 ) : NNNNNNNTACAGACANATGGGCAGACAGAC----AAAC-----GGACA-TG--CTGATTCCANTATACCCTC-CT---CGCCTCCTAAACTTAATGCAGTAGTCTCTGTAAGANAACGTTT---A-AAAAATNACTACAAAGTCCGTAAAGTT-TAAA-AACAATC-GTAAAA-TA---AAAA---TACCCATAACTTCCTTGAATGTT---AAAGAATCT--CGATAAAAATG----ACANGTGCGCA---ACTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAAT-CAAAT-TGTTTTGTCATCGGTTNTTTAAGATANACTCTGGACAATG---ACA----------------TCA-A--------CC--TC-A-AAT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATC-AAAATAGCAGGTGCACAACTTCATTAT--T-CAT--ATA--AGATAT-ACACAAAGTTTTAATCAAATCTG-T-T-ATCGGTGTTAAAGATAT
gi|1 : TACAGACAAATGGGCAGACAGGC----AAATTGATTGGAGACTG--ATGAGTCCATTATACC----------GCTTCCTAAA-TTAATGCAGTAGTCTCAATAAAAGAAC-------A-GAAAATGACTGCAAC-TCCATAAAGTT-TAAAGAACACTT-ATAAAA-TA---AAAA---TCTCCATGACTACCTTGAATGTT---AAAGACTCTCACAATAAAAATG----ACAGATGCACA---ACTTGATTATA---T---T--------C--AT---------AAAGTTTGAAT-TAAATATGTTTTAT-ATTGGTTTTTCAAGATAAACTCTGGACAATG---ACA----------------TCA-A--------CC--TC-A-AATAGGAAA-AAGTA------ACTCT-T----AACTTCCTTGAATG-TT---AAAAAC-TCTCCATC-AAAATGGCAGGTGCACAACTTTATTAT--T-CAT--ATG--AGGTAT-GCAGAGAATTTTAATCATATCTG-T-T-AGCAGTGTTAAAGATAT
gi|10 : tcatttgCAGACACA--GGCAGACTGACCAACAAAT-----GGACA-TAACCTA--TGCATTACACCCTC----------TCCTTGTTTTTATGCACTATTCTTTGTAAGATAAcc
gi|12 : catatccacagcCAGACAGAC----AGAC-----GGACATTG--CTGATTCCA-TATACCCtat
gi|13 : agaacatgcccgggacaaaacatcaatcatgtctaAGGTGCATAAC---ATTAT--TACATTGATA--ATATTT-GCACAAAGTTTGGATCAAATCTG-T-TCATCAGTc
gi|14 : tatctACAGAC----AAAC-----GGACA-TG--CTGATTCCAACATACCCtt
gi|15 : atcatgtccGCAGACAGAC----ATAC-----GGACA-TA--CTGATTTCAATAT--CCTC-Cc
gi|16 : gtctACAGAC----AAAC-----GGACA-TG--CTGATTCCAATATACCCc
gi|17 : tgtatACAGAC----AGAC-----GGACA-TG--CTGATTCCAATA
gi|2 : atcatgtctTACAGACAGATGGGCAGATAGAC----AAAT-----GGAC--TG--TTGATTTCATTATACTCTC----------TCTCAAACTTA-TGCAGTAGTCTTTGTAAGATAACATTT---ATACAAATCAAT---AAGTCCGTAAAGTT-CACATAACTATCAGTAAAA-TG---AAAA---TACACCTAACGTCCTTGAATGTT---AAAGAATCT--CAATAAAAATGATATACATGTGTGCGAATACTCTATTATAGTCTAT-A--------C--ATGTACACAAAAAAGTTTAAATACAAAT-TAT----CCAT---TCATTTA--CTCTGCCCTGGGCAATGACAACA----------------TGA-A--------CCCTTC-ACAAA-GGAAATAAATA--------TCCCC----AACTCTATTGAGTG-CT---AAAAAATTCTCAAGA-AAAATAGC
gi|3 : tcacatcGATATACTGTGGATAATG---ACA----------------GCA-AAACACCTCCC--CC-A-TAT-GGAAA-AAATATTCAAAACTTTATTCATAACTTCTATGAATG-TTTAAAAAAAA-TCTTGATC-AAAATAGCAAGTACACAACTTCATTAC--T-CAA--ATA--AGATAT-ATACAAAGT-----------CTG-T-TCATCAGTGTTAAAGATAT
gi|3 : catacacatttAAAA-TATTCAAAACTTTATTCATAACTTCTATGAATGTTTAAAAAAAATCT--TGATCAAAATA----GCAAGTACACA---ACTTCAT-------TAC-T--------CAAAT---------AAGATATATA--CAAA---GTCTGTTCATCAG-TGTTAAAGATATACCCTGGACAA-------A----------------TCATA--------TC--TCTG-AGT-GGACA-GAAaccctggacaaatcatatctctgagtggacagaaagacagatggacaaggtgattccagtat
gi|3 : catacacatttgatatactgtggataatgacagcaaaacacctcccccatatggaaTGGACAGAAAGAC----AGAT-----GGACA-AG--GTGATTCCAGTATagacagatggacaaggtgattccagtat
gi|4 : catacacatttgatatactgtggataatgacagcaaaacacctcccccatatggaaaaaatattcaaaactttattcataacttctatgaatgtttaaaaaaaatcttgatcaaaatagcaagtacacaacttcattactcaaataagatatatacaaagtctgttcatcagtgttaaagatataccctggacaaatcatatctctgagCA-A--------CCC-TC-A-AA-----AA-AAA-A------ATCCT-T----CACTTCTTAGAATG-TT---AAAAAA-TCTTCATC-TAAATACCAGGTGCACAACTTCTTGAT--C-CAT--ATA--CGATAA-TCACAAGGTTTCAATAAGATCTGTT-T-ATTGGTGTGAAAGACAT
gi|5 : taaagacctcAAGACAAACTCTGGATAATG---ACAGCATAACAACCACCACTCA-A--------TT--TA-A-AAT-GGGGATAAATT------A-TCTAC----AATTTCCTTGAATGTTT---AAAAAG-TCTCAATCTGAGGTAACAG--ACTCTTCCTTACTAT--T-TAT--GTA--AGATAT-ACACAAAGTCTCAATCAATTCTG-TAC-ATCGGTGTTCAAGGTATactatgaacaaattgtatctgagaacagacacacagacaaggtgactgaaacacaccttgtaaac
gi|6 : gaatacataatacTCATCATCTT-CAT--GCA--ACATATTACATAAAGTTTTAA----A---------ATTGGTGTTAAAGATAT
gi|7 : acattttcattacTATCAAGTGCACAATTTCATTAT--T-CAC--ATACGAAATAT-ACACAAAGTTTTAACTAAATCTGAT-C-ATCAGTTTTAAAGATAaatctggataaattacatctatggacaaacagatggacaagatgattccagactggaatttccagtgtagtatacccctttgcttgtgggggtgta
gi|7 : TGGATGGACAGAC----AAAC-----AGG--------TGATTCTAGAATACCCgactccgaataaattatgtctttggatggacagacaaacaggtgattctagaatacccacttt
gi|8 : tatcaagtgcacaatttcattattcacatacgaaatatacacaaagttttaactaaatctgatcatcagttttaaagatagactccgaataaattatgtcttGACA-CG--GTGATTTCATTACACTCTCGCTTGCCGCCCTCTAAACTTAA-ACAGTAGTCTCTGTGAGAGAACGTTTTACA-AAATATAAC-ACAAAGTCCATACAGTTATAAA-AGTAATCTGTAAAATTA---AAAA---TGCCCAacttt
gi|9 : ATGTT---AAAAAATCT--CAATAAAAATG----ACATGAGCATA---ACTTCATTATA---TACATTATATATGC--AT---------AAAGTTAAAAT-CAA-----TTTTGTC-T--ATTTTTTAAAATAAACTTTAGACAATG---ACatcgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): ATGATTTTTGAAATATAATCTGGACAACAAAACATCATGTCTGTGACTGGATAGATGGACATGGTGATCCCATAATAC
Alignments
lowQualScore : 11111 44444444444 333333333 11 1 2 2 1 111 111 111 11 2222 111 888888888888888888888888888888 11 333333333333333333 111 555555555555555555555555555555555 11 1 44444444444444444 111 22222
lowQualScore : 1 0 8888 00000 7 555 4 33333333333 6 66 1 666666666 1 99 6 0 3 6 6 0 777 777 0 0 777 33 2 1111 1 2 777 0 3 111111111111111111111111111111 33 111111111111111111 1 55 1 111 999999999999999999999999999999999 666 00 3 0 22222222222222222 1 8 444 8 6 8 1 1 77 5 77 77 5 0 2 8888 1 11111
lowQualScore : . . .... ..... . ... . ........... . .. . ......... . .. . . . . . . ... ... . . ... .. . .... . . ... . . .............................. .. .................. . .. . ... ................................. ... .. . . ................. . . ... . . . . . .. . .. .. . . . .... . .....
lowQualScore : 0 8 5555 00000 3 555 5 22222222222 5 55 0 777777777 0 33 7 7 3 7 7 0 555 555 8 2 555 88 0 2222 0 0 555 2 2 555555555555555555555555555555 22 222222222222222222 0 88 0 777 666666666666666666666666666666666 888 22 3 8 66666666666666666 4 0 000 0 4 0 0 7 99 7 99 99 7 1 1 1111 4 77777
consensus : NNNNNNNTACAGACANATGGGCAGACAG----ACAAAC-----GGACA-TG--CTGATTCCANTATACCCTC------CGCCTCCTAAACTTAATGCAGTAGTCTCTGTAAGANAACGTTT---A-AAAAATNACTGCAAAGTCCGTAAAGTT-TAAA-AACAATC-GTAAAA-TA---AAAA---TACCCATAACTTCCTTGAATGTT---AAAGAATCT--CGATAAAAATG----ACANGTGCGCA---ACTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAAT-CAAAT-TGTCTNNTCATCGGTTNTTCAAGATANACTCTGGACAATG---ACA----------------TCA-A--------CC--TC-A-AAT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATC-AAAATAGCAGGTGCACAACTTCATTAT--T-CAT--ATA--AGATAT-ACACAAAGTTTTAATCAAATCTG-T-T-ATCGGTGTTAAAGATAT
Reference ( family-35 ) : NNNNNNNTACAGACANATGGGCAGACAG----ACAAAC-----GGACA-TG--CTGATTCCANTATACCCTC------CGCCTCCTAAACTTAATGCAGTAGTCTCTGTAAGANAACGTTT---A-AAAAATNACTGCAAAGTCCGTAAAGTT-TAAA-AACAATC-GTAAAA-TA---AAAA---TACCCATAACTTCCTTGAATGTT---AAAGAATCT--CGATAAAAATG----ACANGTGCGCA---ACTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAAT-CAAAT-TGTTTTNTCATCGGTTNTTTAAGATANACTCTGGACAATG---ACA----------------TCA-A--------CC--TC-A-AAT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATC-AAAATAGCAGGTGCACAACTTCATTAT--T-CAT--ATA--AGATAT-ACACAAAGTTTTAATCAAATCTG-T-T-ATCGGTGTTAAAGATAT
gi|1 : TACAGACAAATGGGCAGACAG----GCAAATTGATTGGAGACTG--ATGAGTCCATTATACC----------GCTTCCTAAA-TTAATGCAGTAGTCTCAATAAAAGAAC-------A-GAAAATGACTGCAAC-TCCATAAAGTT-TAAAGAACACTT-ATAAAA-TA---AAAA---TCTCCATGACTACCTTGAATGTT---AAAGACTCTCACAATAAAAATG----ACAGATGCACA---ACTTGATTATA---T---T--------C--AT---------AAAGTTTGAAT-TAAATATGTTTTAT-ATTGGTTTTTCAAGATAAACTCTGGACAATG---ACA----------------TCA-A--------CC--TC-A-AATAGGAAA-AAGTA------ACTCT-T----AACTTCCTTGAATG-TT---AAAAAC-TCTCCATC-AAAATGGCAGGTGCACAACTTTATTAT--T-CAT--ATG--AGGTAT-GCAGAGAATTTTAATCATATCTG-T-T-AGCAGTGTTAAAGATAT
gi|10 : tcatttgCAGACACA--GGCAGACTGACCAACAAAT-----GGACA-TAACCTA--TGCATTACACCCT----------CTCCTTGTTTTTATGCACTATTCTTTGTAAGATAAcc
gi|12 : catatccacagcCAGACAG----ACAGAC-----GGACATTG--CTGATTCCA-TATACCCtat
gi|13 : agaacatgcccgggacaaaacatcaatcatgtctaAGGTGCATAAC---ATTAT--TACATTGATA--ATATTT-GCACAAAGTTTGGATCAAATCTG-T-TCATCAGTc
gi|14 : tatctACAG----ACAAAC-----GGACA-TG--CTGATTCCAACATACCCtt
gi|15 : atcatgtccGCAGACAG----ACATAC-----GGACA-TA--CTGATTTCAATAT--CCTC------Cc
gi|16 : gtctACAG----ACAAAC-----GGACA-TG--CTGATTCCAATATACCCc
gi|17 : tgtatACAG----ACAGAC-----GGACA-TG--CTGATTCCAATA
gi|2 : atcatgtctTACAGACAGATGGGCAGATAG----ACAAAT-----GGAC--TG--TTGATTTCATTATACTCTC----------TCTCAAACTTA-TGCAGTAGTCTTTGTAAGATAACATTT---ATACAAATCAAT---AAGTCCGTAAAGTT-CACATAACTATCAGTAAAA-TG---AAAA---TACACCTAACGTCCTTGAATGTT---AAAGAATCT--CAATAAAAATGATATACATGTGTGCGAATACTCTATTATAGTCTAT-A--------C--ATGTACACAAAAAAGTTTAAATACAAAT-TATCCATTCAT---TTACTC------TGCCCTGGGCAATGACAACA----------------TGA-A--------CCCTTC-ACAAA-GGAAATAAATA--------TCCCC----AACTCTATTGAGTG-CT---AAAAAATTCTCAAGA-AAAATAGC
gi|3 : tcacatcGATATACTGTGGATAATG---ACA----------------GCA-AAACACCTCCC--CC-A-TAT-GGAAA-AAATATTCAAAACTTTATTCATAACTTCTATGAATG-TTTAAAAAAAA-TCTTGATC-AAAATAGCAAGTACACAACTTCATTAC--T-CAA--ATA--AGATAT-ATACAAAGT-----------CTG-T-TCATCAGTGTTAAAGATAT
gi|3 : catacacatttAAAA-TATTCAAAACTTTATTCATAACTTCTATGAATGTTTAAAAAAAATCT--TGATCAAAATA----GCAAGTACACA---ACTTCAT-------TAC-T--------CAAAT---------AAGATATATA--CAAA---GTCTGTTCATCAG-TGTTAAAGATATACCCTGGACAA-------A----------------TCATA--------TC--TCTG-AGT-GGACA-GAAaccctggacaaatcatatctctgagtggacagaaagacagatggacaaggtgattccagtat
gi|3 : catacacatttgatatactgtggataatgacagcaaaacacctcccccatatggaaTGGACAGAAAG----ACAGAT-----GGACA-AG--GTGATTCCAGTATagacagatggacaaggtgattccagtat
gi|4 : catacacatttgatatactgtggataatgacagcaaaacacctcccccatatggaaaaaatattcaaaactttattcataacttctatgaatgtttaaaaaaaatcttgatcaaaatagcaagtacacaacttcattactcaaataagatatatacaaagtctgttcatcagtgttaaagatataccctggacaaatcatatctctgagCA-A--------CCC-TC-A-AA-----AA-AAA-A------ATCCT-T----CACTTCTTAGAATG-TT---AAAAAA-TCTTCATC-TAAATACCAGGTGCACAACTTCTTGAT--C-CAT--ATA--CGATAA-TCACAAGGTTTCAATAAGATCTGTT-T-ATTGGTGTGAAAGACAT
gi|5 : taaagacctcAAGACAAACTCTGGATAATG---ACAGCATAACAACCACCACTCA-A--------TT--TA-A-AAT-GGGGATAAATT------A-TCTAC----AATTTCCTTGAATGTTT---AAAAAG-TCTCAATCTGAGGTAACAG--ACTCTTCCTTACTAT--T-TAT--GTA--AGATAT-ACACAAAGTCTCAATCAATTCTG-TAC-ATCGGTGTTCAAGGTATactatgaacaaattgtatctgagaacagacacacagacaaggtgactgaaacacaccttgtaaac
gi|6 : gaatacataatacTCATCATCTT-CAT--GCA--ACATATTACATAAAGTTTTAA----A---------ATTGGTGTTAAAGATAT
gi|7 : acattttcattacTATCAAGTGCACAATTTCATTAT--T-CAC--ATACGAAATAT-ACACAAAGTTTTAACTAAATCTGAT-C-ATCAGTTTTAAAGATAaatctggataaattacatctatggacaaacagatggacaagatgattccagactggaatttccagtgtagtatacccctttgcttgtgggggtgta
gi|7 : TGGATGGACAG----ACAAAC-----AGG--------TGATTCTAGAATACCCgactccgaataaattatgtctttggatggacagacaaacaggtgattctagaatacccacttt
gi|8 : tatcaagtgcacaatttcattattcacatacgaaatatacacaaagttttaactaaatctgatcatcagttttaaagatagactccgaataaattatgtcttGACA-CG--GTGATTTCATTACACTCTCGCTTGCCGCCCTCTAAACTTAA-ACAGTAGTCTCTGTGAGAGAACGTTTTACA-AAATATAAC-ACAAAGTCCATACAGTTATAAA-AGTAATCTGTAAAATTA---AAAA---TGCCCAacttt
gi|9 : ATGTT---AAAAAATCT--CAATAAAAATG----ACATGAGCATA---ACTTCATTATA---TACATTATATATGC--AT---------AAAGTTAAAAT-CAA-----TTTTGTC-T--ATTTTTTAAAATAAACTTTAGACAATG---ACatcgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): ATGATTTTTGAAATATAATCTGGACAACAAAACATCATGTCTGTGACTGGATAGATGGACATGGTGATCCCATAATAC
Alignments
lowQualScore : 11111 44444444444 333333333 11 1 2 2 1 111 111 111 11 2222 111 888888888888888888888888888888 11 2222 3333333333 111 555555555555555555555555555555555 11 1 44444444444444444 111 22222
lowQualScore : 1 0 8888 00000 7 555 4 33333333333 6 66 1 666666666 1 99 6 0 3 6 6 0 777 777 0 0 777 33 2 1111 1 2 777 0 3 111111111111111111111111111111 33 0000 6666666666 1 0 1 111 999999999999999999999999999999999 666 00 3 0 22222222222222222 1 8 444 8 6 8 1 1 77 5 77 77 5 0 2 8888 1 11111
lowQualScore : . . .... ..... . ... . ........... . .. . ......... . .. . . . . . . ... ... . . ... .. . .... . . ... . . .............................. .. .... .......... . . . ... ................................. ... .. . . ................. . . ... . . . . . .. . .. .. . . . .... . .....
lowQualScore : 0 8 5555 00000 3 555 5 22222222222 5 55 0 777777777 0 33 7 7 3 7 7 0 555 555 8 2 555 88 0 2222 0 0 555 2 2 555555555555555555555555555555 22 8888 5555555555 0 8 0 777 666666666666666666666666666666666 888 22 3 8 66666666666666666 4 0 000 0 4 0 0 7 99 7 99 99 7 1 1 1111 4 77777
consensus : NNNNNNNTACAGACANATGGGCAGACAG----ACAAAC-----GGACA-TG--CTGATTCCANTATACCCTC------CGCCTCCTAAACTTAATGCAGTAGTCTCTGTAAGANAACGTTT---A-AAAAATNACTGCAAAGTCCGTAAAGTT-TAAA-AACAATC-GTAAAA-TA---AAAA---TACCCATAACTTCCTTGAATGTT---AAAGAATCT--CGATAAAAATG----ACANGTGCGCA---ACTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAAT-CAA-AT-TGTCTATTCATCGGTTNTTCAAGATANACTCTGGACAATG---ACA----------------TCA-A--------CC--TC-A-AAT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATC-AAAATAGCAGGTGCACAACTTCATTAT--T-CAT--ATA--AGATAT-ACACAAAGTTTTAATCAAATCTG-T-T-ATCGGTGTTAAAGATAT
Reference ( family-35 ) : NNNNNNNTACAGACANATGGGCAGACAG----ACAAAC-----GGACA-TG--CTGATTCCANTATACCCTC------CGCCTCCTAAACTTAATGCAGTAGTCTCTGTAAGANAACGTTT---A-AAAAATNACTGCAAAGTCCGTAAAGTT-TAAA-AACAATC-GTAAAA-TA---AAAA---TACCCATAACTTCCTTGAATGTT---AAAGAATCT--CGATAAAAATG----ACANGTGCGCA---ACTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAAT-CAA-AT-TGTCTNNTCATCGGTTNTTCAAGATANACTCTGGACAATG---ACA----------------TCA-A--------CC--TC-A-AAT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATC-AAAATAGCAGGTGCACAACTTCATTAT--T-CAT--ATA--AGATAT-ACACAAAGTTTTAATCAAATCTG-T-T-ATCGGTGTTAAAGATAT
gi|1 : TACAGACAAATGGGCAGACAG----GCAAATTGATTGGAGACTG--ATGAGTCCATTATACC----------GCTTCCTAAA-TTAATGCAGTAGTCTCAATAAAAGAAC-------A-GAAAATGACTGCAAC-TCCATAAAGTT-TAAAGAACACTT-ATAAAA-TA---AAAA---TCTCCATGACTACCTTGAATGTT---AAAGACTCTCACAATAAAAATG----ACAGATGCACA---ACTTGATTATA---T---T--------C--AT---------AAAGTTTGAAT-TAA-ATATGTTTTAT-ATTGGTTTTTCAAGATAAACTCTGGACAATG---ACA----------------TCA-A--------CC--TC-A-AATAGGAAA-AAGTA------ACTCT-T----AACTTCCTTGAATG-TT---AAAAAC-TCTCCATC-AAAATGGCAGGTGCACAACTTTATTAT--T-CAT--ATG--AGGTAT-GCAGAGAATTTTAATCATATCTG-T-T-AGCAGTGTTAAAGATAT
gi|10 : tcatttgCAGACACA--GGCAGACTGACCAACAAAT-----GGACA-TAACCTA--TGCATTACACCCT----------CTCCTTGTTTTTATGCACTATTCTTTGTAAGATAAcc
gi|12 : catatccacagcCAGACAG----ACAGAC-----GGACATTG--CTGATTCCA-TATACCCtat
gi|13 : agaacatgcccgggacaaaacatcaatcatgtctaAGGTGCATAAC---ATTAT--TACATTGATA--ATATTT-GCACAAAGTTTGGATCAAATCTG-T-TCATCAGTc
gi|14 : tatctACAG----ACAAAC-----GGACA-TG--CTGATTCCAACATACCCtt
gi|15 : atcatgtccGCAGACAG----ACATAC-----GGACA-TA--CTGATTTCAATAT--CCTC------Cc
gi|16 : gtctACAG----ACAAAC-----GGACA-TG--CTGATTCCAATATACCCc
gi|17 : tgtatACAG----ACAGAC-----GGACA-TG--CTGATTCCAATA
gi|2 : atcatgtctTACAGACAGATGGGCAGATAG----ACAAAT-----GGAC--TG--TTGATTTCATTATACTCTC----------TCTCAAACTTA-TGCAGTAGTCTTTGTAAGATAACATTT---ATACAAATCAAT---AAGTCCGTAAAGTT-CACATAACTATCAGTAAAA-TG---AAAA---TACACCTAACGTCCTTGAATGTT---AAAGAATCT--CAATAAAAATGATATACATGTGTGCGAATACTCTATTATAGTCTAT-A--------C--ATGTACACAAAAAAGTTTAAATACAA-AT-TATCCATTCAT---TTACTC------TGCCCTGGGCAATGACAACA----------------TGA-A--------CCCTTC-ACAAA-GGAAATAAATA--------TCCCC----AACTCTATTGAGTG-CT---AAAAAATTCTCAAGA-AAAATAGC
gi|3 : tcacatcGATATACTGTGGATAATG---ACA----------------GCA-AAACACCTCCC--CC-A-TAT-GGAAA-AAATATTCAAAACTTTATTCATAACTTCTATGAATG-TTTAAAAAAAA-TCTTGATC-AAAATAGCAAGTACACAACTTCATTAC--T-CAA--ATA--AGATAT-ATACAAAGT-----------CTG-T-TCATCAGTGTTAAAGATAT
gi|3 : catacacatttAAAA-TATTCAAAACTTTATTCATAACTTCTATGAATGTTTAAAAAAAATCT--TGATCAAAATA----GCAAGTACACA---ACTTCAT-------TAC-T--------CAAAT---------AAGATATATA--CAA-A---GTCTGTTCATCAG-TGTTAAAGATATACCCTGGACAA-------A----------------TCATA--------TC--TCTG-AGT-GGACA-GAAaccctggacaaatcatatctctgagtggacagaaagacagatggacaaggtgattccagtat
gi|3 : catacacatttgatatactgtggataatgacagcaaaacacctcccccatatggaaTGGACAGAAAG----ACAGAT-----GGACA-AG--GTGATTCCAGTATagacagatggacaaggtgattccagtat
gi|4 : catacacatttgatatactgtggataatgacagcaaaacacctcccccatatggaaaaaatattcaaaactttattcataacttctatgaatgtttaaaaaaaatcttgatcaaaatagcaagtacacaacttcattactcaaataagatatatacaaagtctgttcatcagtgttaaagatataccctggacaaatcatatctctgagCA-A--------CCC-TC-A-AA-----AA-AAA-A------ATCCT-T----CACTTCTTAGAATG-TT---AAAAAA-TCTTCATC-TAAATACCAGGTGCACAACTTCTTGAT--C-CAT--ATA--CGATAA-TCACAAGGTTTCAATAAGATCTGTT-T-ATTGGTGTGAAAGACAT
gi|5 : taaagacctcCAAGACAAACTCTGGATAATG---ACAGCATAACAACCACCACTCA-A--------TT--TA-A-AAT-GGGGATAAATT------A-TCTAC----AATTTCCTTGAATGTTT---AAAAAG-TCTCAATCTGAGGTAACAG--ACTCTTCCTTACTAT--T-TAT--GTA--AGATAT-ACACAAAGTCTCAATCAATTCTG-TAC-ATCGGTGTTCAAGGTATactatgaacaaattgtatctgagaacagacacacagacaaggtgactgaaacacaccttgtaaac
gi|6 : gaatacataataTCATCATCTT-CAT--GCA--ACATATTACATAAAGTTTTAA----A---------ATTGGTGTTAAAGATAT
gi|7 : acattttcattacTATCAAGTGCACAATTTCATTAT--T-CAC--ATACGAAATAT-ACACAAAGTTTTAACTAAATCTGAT-C-ATCAGTTTTAAAGATAaatctggataaattacatctatggacaaacagatggacaagatgattccagactggaatttccagtgtagtatacccctttgcttgtgggggtgta
gi|7 : TGGATGGACAG----ACAAAC-----AGG--------TGATTCTAGAATACCCgactccgaataaattatgtctttggatggacagacaaacaggtgattctagaatacccacttt
gi|8 : tatcaagtgcacaatttcattattcacatacgaaatatacacaaagttttaactaaatctgatcatcagttttaaagatagactccgaataaattatgtcttGACA-CG--GTGATTTCATTACACTCTCGCTTGCCGCCCTCTAAACTTAA-ACAGTAGTCTCTGTGAGAGAACGTTTTACA-AAATATAAC-ACAAAGTCCATACAGTTATAAA-AGTAATCTGTAAAATTA---AAAA---TGCCCAacttt
gi|9 : ATGTT---AAAAAATCT--CAATAAAAATG----ACATGAGCATA---ACTTCATTATA---TACATTATATATGC--AT---------AAAGTTAAAAT-CAATTT-TGTCTA--------TTTTTTAAAATAAACTTTAGACAATG---ACatcgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): ATGATTTTTGAAATATAATCTGGACAACAAAACATCATGTCTGTGACTGGATAGATGGACATGGTGATCCCATAATAC
Alignments
lowQualScore : 11111 44444444444 333333333 11 1 2 2 1 111 111 111 11 2222 111 888888888888888888888888888888 11 2222222 333333333 777777777777777777777777777777777 11 1 44444444444444444 111 22222
lowQualScore : 1 0 8888 00000 7 555 4 33333333333 6 66 1 666666666 1 99 6 0 3 6 6 0 777 777 0 0 777 33 2 1111 1 2 777 0 3 111111111111111111111111111111 33 1111111 444444444 1 0 1 333333333333333333333333333333333 666 00 3 0 22222222222222222 1 8 444 8 6 8 1 1 77 5 77 77 5 0 2 8888 1 11111
lowQualScore : . . .... ..... . ... . ........... . .. . ......... . .. . . . . . . ... ... . . ... .. . .... . . ... . . .............................. .. ....... ......... . . . ................................. ... .. . . ................. . . ... . . . . . .. . .. .. . . . .... . .....
lowQualScore : 0 8 5555 00000 3 555 5 22222222222 5 55 0 777777777 0 33 7 7 3 7 7 0 555 555 8 2 555 88 0 2222 0 0 555 2 2 555555555555555555555555555555 22 8888888 000000000 0 8 0 666666666666666666666666666666666 888 22 3 8 66666666666666666 4 0 000 0 4 0 0 7 99 7 99 99 7 1 1 1111 4 77777
consensus : NNNNNNNTACAGACANATGGGCAGACAG----ACAAAC-----GGACA-TG--CTGATTCCANTATACCCTC------CGCCTCCTAAACTTAATGCAGTAGTCTCTGTAAGANAACGTTT---A-AAAAATNACTGCAAAGTCCGTAAAGTT-TAAA-AACAATC-GTAAAA-TA---AAAA---TACCCATAACTTCCTTGAATGTT---AAAGAATCT--CGATAAAAATGA----CANGTGCGCAA---CTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAAT-CAA-AT-TG-TCTATTCATCGGTTNTTCAAGATANACTCTGGACAATGACA-CA-------------TCA-A--------CC--TC-A-AAT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATC-AAAATAGCAGGTGCACAACTTCATTAT--T-CAT--ATA--AGATAT-ACACAAAGTTTTAATCAAATCTG-T-T-ATCGGTGTTAAAGATAT
Reference ( family-35 ) : NNNNNNNTACAGACANATGGGCAGACAG----ACAAAC-----GGACA-TG--CTGATTCCANTATACCCTC------CGCCTCCTAAACTTAATGCAGTAGTCTCTGTAAGANAACGTTT---A-AAAAATNACTGCAAAGTCCGTAAAGTT-TAAA-AACAATC-GTAAAA-TA---AAAA---TACCCATAACTTCCTTGAATGTT---AAAGAATCT--CGATAAAAATGA----CANGTGCGCAA---CTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAAT-CAA-AT-TG-TCTATTCATCGGTTNTTCAAGATANACTCTGGACAATGACA----------------TCA-A--------CC--TC-A-AAT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATC-AAAATAGCAGGTGCACAACTTCATTAT--T-CAT--ATA--AGATAT-ACACAAAGTTTTAATCAAATCTG-T-T-ATCGGTGTTAAAGATAT
gi|1 : TACAGACAAATGGGCAGACAG----GCAAATTGATTGGAGACTG--ATGAGTCCATTATACC----------GCTTCCTAAA-TTAATGCAGTAGTCTCAATAAAAGAAC-------A-GAAAATGACTGCAAC-TCCATAAAGTT-TAAAGAACACTT-ATAAAA-TA---AAAA---TCTCCATGACTACCTTGAATGTT---AAAGACTCTCACAATAAAAATGA----CAGATGCACAA---CTTGATTATA---T---T--------C--AT---------AAAGTTTGAAT-TAA-ATATGTTTTAT--ATTGGTTTTTCAAGATAAACTCTGGACAATGACA----------------TCA-A--------CC--TC-A-AATAGGAAA-AAGTA------ACTCT-T----AACTTCCTTGAATG-TT---AAAAAC-TCTCCATC-AAAATGGCAGGTGCACAACTTTATTAT--T-CAT--ATG--AGGTAT-GCAGAGAATTTTAATCATATCTG-T-T-AGCAGTGTTAAAGATAT
gi|10 : tcatttgCAGACACA--GGCAGACTGACCAACAAAT-----GGACA-TAACCTA--TGCATTACACCCT----------CTCCTTGTTTTTATGCACTATTCTTTGTAAGATAAcc
gi|12 : catatccacagcCAGACAG----ACAGAC-----GGACATTG--CTGATTCCA-TATACCCtat
gi|13 : agaacatgcccgggacaaaacatcaatcatgtctaAGGTGCATAAC---ATTAT--TACATTGATA--ATATTT-GCACAAAGTTTGGATCAAATCTG-T-TCATCAGTc
gi|14 : tatctACAG----ACAAAC-----GGACA-TG--CTGATTCCAACATACCCtt
gi|15 : atcatgtccGCAGACAG----ACATAC-----GGACA-TA--CTGATTTCAATAT--CCTC------Cc
gi|16 : gtctACAG----ACAAAC-----GGACA-TG--CTGATTCCAATATACCCc
gi|17 : tgtatACAG----ACAGAC-----GGACA-TG--CTGATTCCAATA
gi|2 : atcatgtctTACAGACAGATGGGCAGATAG----ACAAAT-----GGAC--TG--TTGATTTCATTATACTCTC----------TCTCAAACTTA-TGCAGTAGTCTTTGTAAGATAACATTT---ATACAAATCAAT---AAGTCCGTAAAGTT-CACATAACTATCAGTAAAA-TG---AAAA---TACACCTAACGTCCTTGAATGTT---AAAGAATCT--CAATAAAAATGATATACATGTGTGCGAATACTCTATTATAGTCTAT-A--------C--ATGTACACAAAAAAGTTTAAATACAA-AT-TA-TCCATTCAT---TTACTC------TGCCCTGGGCAATGACAACA-------------TGA-A--------CCCTTC-ACAAA-GGAAATAAATA--------TCCCC----AACTCTATTGAGTG-CT---AAAAAATTCTCAAGA-AAAATAGC
gi|3 : tcacatcGATATACTGTGGATAATGACA----------------GCA-AAACACCTCCC--CC-A-TAT-GGAAA-AAATATTCAAAACTTTATTCATAACTTCTATGAATG-TTTAAAAAAAA-TCTTGATC-AAAATAGCAAGTACACAACTTCATTAC--T-CAA--ATA--AGATAT-ATACAAAGT-----------CTG-T-TCATCAGTGTTAAAGATAT
gi|3 : catacacatttAAAA-TATTCAAAACTTTATTCATAACTTCTATGAATGTTTAAAAAAAATCT--TGATCAAAATAG----CAAGTACACAA---CTTCAT-------TAC-T--------CAAAT---------AAGATATATA--CAA-A---G-TCTGTTCATCAG-TGTTAAAGATATACCCTGGACAA----A----------------TCATA--------TC--TCTG-AGT-GGACA-GAAaccctggacaaatcatatctctgagtggacagaaagacagatggacaaggtgattccagtat
gi|3 : catacacatttgatatactgtggataatgacagcaaaacacctcccccatatggaaTGGACAGAAAG----ACAGAT-----GGACA-AG--GTGATTCCAGTATagacagatggacaaggtgattccagtat
gi|4 : catacacatttgatatactgtggataatgacagcaaaacacctcccccatatggaaaaaatattcaaaactttattcataacttctatgaatgtttaaaaaaaatcttgatcaaaatagcaagtacacaacttcattactcaaataagatatatacaaagtctgttcatcagtgttaaagatataccctggacaaatcatatctctgagCA-A--------CCC-TC-A-AA-----AA-AAA-A------ATCCT-T----CACTTCTTAGAATG-TT---AAAAAA-TCTTCATC-TAAATACCAGGTGCACAACTTCTTGAT--C-CAT--ATA--CGATAA-TCACAAGGTTTCAATAAGATCTGTT-T-ATTGGTGTGAAAGACAT
gi|5 : taaagacctcCAAGACAAACTCTGGATAATGACAGCATAACAACCACCACTCA-A--------TT--TA-A-AAT-GGGGATAAATT------A-TCTAC----AATTTCCTTGAATGTTT---AAAAAG-TCTCAATCTGAGGTAACAG--ACTCTTCCTTACTAT--T-TAT--GTA--AGATAT-ACACAAAGTCTCAATCAATTCTG-TAC-ATCGGTGTTCAAGGTATactatgaacaaattgtatctgagaacagacacacagacaaggtgactgaaacacaccttgtaaac
gi|6 : gaatacataataTCATCATCTT-CAT--GCA--ACATATTACATAAAGTTTTAA----A---------ATTGGTGTTAAAGATAT
gi|7 : acattttcattacTATCAAGTGCACAATTTCATTAT--T-CAC--ATACGAAATAT-ACACAAAGTTTTAACTAAATCTGAT-C-ATCAGTTTTAAAGATAaatctggataaattacatctatggacaaacagatggacaagatgattccagactggaatttccagtgtagtatacccctttgcttgtgggggtgta
gi|7 : TGGATGGACAG----ACAAAC-----AGG--------TGATTCTAGAATACCCgactccgaataaattatgtctttggatggacagacaaacaggtgattctagaatacccacttt
gi|8 : tatcaagtgcacaatttcattattcacatacgaaatatacacaaagttttaactaaatctgatcatcagttttaaagatagactccgaataaattatgtcttGACA-CG--GTGATTTCATTACACTCTCGCTTGCCGCCCTCTAAACTTAA-ACAGTAGTCTCTGTGAGAGAACGTTTTACA-AAATATAAC-ACAAAGTCCATACAGTTATAAA-AGTAATCTGTAAAATTA---AAAA---TGCCCAacttt
gi|9 : ATGTT---AAAAAATCT--CAATAAAAATGA----CATGAGCATAA---CTTCATTATA---TACATTATATATGC--AT---------AAAGTTAAAAT-CAATTT-TG-TCTA--------TTTTTTAAAATAAACTTTAGACAATGACatcgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): ATGATTTTTGAAATATAATCTGGACAACAAAACATCATGTCTGTGACTGGATAGATGGACATGGTGATCCCATAATAC
Alignments
lowQualScore : 11111 44444444444 333333333 11 1 2 2 1 111 111 111 111 2222 111 888888888888888888888888888888 11 2222 33333333333 5555555555555555555555555555555555555555555555555555555555555555555 111 22222
lowQualScore : 1 0 8888 00000 7 555 4 33333333333 6 66 1 666666666 1 99 6 0 3 6 6 0 777 777 0 0 777 555 1111 1 2 777 0 3 111111111111111111111111111111 33 0000 88888888888 1 0 1 7777777777777777777777777777777777777777777777777777777777777777777 1 8 444 8 6 8 1 1 77 5 77 77 5 0 2 8888 1 11111
lowQualScore : . . .... ..... . ... . ........... . .. . ......... . .. . . . . . . ... ... . . ... ... .... . . ... . . .............................. .. .... ........... . . . ................................................................... . . ... . . . . . .. . .. .. . . . .... . .....
lowQualScore : 0 8 5555 00000 3 555 5 22222222222 5 55 0 777777777 0 33 7 7 3 7 7 0 555 555 8 2 555 888 2222 0 0 555 2 2 555555555555555555555555555555 22 8888 88888888888 0 8 0 5555555555555555555555555555555555555555555555555555555555555555555 4 0 000 0 4 0 0 7 99 7 99 99 7 1 1 1111 4 77777
consensus : NNNNNNNTACAGACANATGGGCAGACAG----ACAAAC-----GGACA-TG--CTGATTCCANTATACCCTC------CGCCTCCTAAACTTAATGCAGTAGTCTCTGTAAGANAACGTTT---A-AAAAATNACTGCAAAGTCCGTAAAGTT-TAAA-AACAATC-GTAAAA-TA---AAAA---TACCCATAACTTCCTTGAATGTT---AAAGAATCTCG--ATAAAAATG----ACANGTGCGCA---ACTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAAT-CAA-AT-TGTCT-ATTCATCGGTTNTTCAAGATANACTCTGGACAATGAC-AG-----CAT--CA-ACC-----TC-A-A------AT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATC-AAAATAGCAGGTGCACAACTTCATTAT--T-CAT--ATA--AGATAT-ACACAAAGTTTTAATCAAATCTG-T-T-ATCGGTGTTAAAGATAT
Reference ( family-35 ) : NNNNNNNTACAGACANATGGGCAGACAG----ACAAAC-----GGACA-TG--CTGATTCCANTATACCCTC------CGCCTCCTAAACTTAATGCAGTAGTCTCTGTAAGANAACGTTT---A-AAAAATNACTGCAAAGTCCGTAAAGTT-TAAA-AACAATC-GTAAAA-TA---AAAA---TACCCATAACTTCCTTGAATGTT---AAAGAATCTCG--ATAAAAATG----ACANGTGCGCA---ACTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAAT-CAA-AT-TGTCT-ATTCATCGGTTNTTCAAGATANACTCTGGACAATGAC-A------CAT--CA-ACC-----TC-A-A------AT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATC-AAAATAGCAGGTGCACAACTTCATTAT--T-CAT--ATA--AGATAT-ACACAAAGTTTTAATCAAATCTG-T-T-ATCGGTGTTAAAGATAT
gi|1 : TACAGACAAATGGGCAGACAG----GCAAATTGATTGGAGACTG--ATGAGTCCATTATACC----------GCTTCCTAAA-TTAATGCAGTAGTCTCAATAAAAGAAC-------A-GAAAATGACTGCAAC-TCCATAAAGTT-TAAAGAACACTT-ATAAAA-TA---AAAA---TCTCCATGACTACCTTGAATGTT---AAAGACTCTCACAATAAAAATG----ACAGATGCACA---ACTTGATTATA---T---T--------C--AT---------AAAGTTTGAAT-TAA-ATATGTTTTAT--ATTGGTTTTTCAAGATAAACTCTGGACAATGAC-A--------T--CA-ACC-----TC-A-A------ATAGGAAA-AAGTA------ACTCT-T----AACTTCCTTGAATG-TT---AAAAAC-TCTCCATC-AAAATGGCAGGTGCACAACTTTATTAT--T-CAT--ATG--AGGTAT-GCAGAGAATTTTAATCATATCTG-T-T-AGCAGTGTTAAAGATAT
gi|10 : tcatttgCAGACACA--GGCAGACTGACCAACAAAT-----GGACA-TAACCTA--TGCATTACACCCT----------CTCCTTGTTTTTATGCACTATTCTTTGTAAGATAAcc
gi|12 : catatccacagcCAGACAG----ACAGAC-----GGACATTG--CTGATTCCA-TATACCCtat
gi|13 : agaacatgcccgggacaaaacatcaatcatgtctaAGGTGCATAAC---ATTAT--TACATTGATA--ATATTT-GCACAAAGTTTGGATCAAATCTG-T-TCATCAGTc
gi|14 : tatctACAG----ACAAAC-----GGACA-TG--CTGATTCCAACATACCCtt
gi|15 : atcatgtccGCAGACAG----ACATAC-----GGACA-TA--CTGATTTCAATAT--CCTC------Cc
gi|16 : gtctACAG----ACAAAC-----GGACA-TG--CTGATTCCAATATACCCc
gi|17 : tgtatACAG----ACAGAC-----GGACA-TG--CTGATTCCAATA
gi|2 : atcatgtctTACAGACAGATGGGCAGATAG----ACAAAT-----GGAC--TG--TTGATTTCATTATACTCTC----------TCTCAAACTTA-TGCAGTAGTCTTTGTAAGATAACATTT---ATACAAATCAAT---AAGTCCGTAAAGTT-CACATAACTATCAGTAAAA-TG---AAAA---TACACCTAACGTCCTTGAATGTT---AAAGAATCTCA--ATAAAAATGATATACATGTGTGCGAATACTCTATTATAGTCTAT-A--------C--ATGTACACAAAAAAGTTTAAATACAA-AT-TATCC-ATTCAT---TTACTC------TGCCCTGGGCAATGACAA------CAT--GA-ACCCT---TC-ACA------AA-GGAAATAAATA--------TCCCC----AACTCTATTGAGTG-CT---AAAAAATTCTCAAGA-AAAATAGC
gi|3 : tcacatcGATATACTGTGGATAATGAC-AGCAAAACAC--CT-CCC-----CC-A-T------AT-GGAAA-AAATATTCAAAACTTTATTCATAACTTCTATGAATG-TTTAAAAAAAA-TCTTGATC-AAAATAGCAAGTACACAACTTCATTAC--T-CAA--ATA--AGATAT-ATACAAAGT-----------CTG-T-TCATCAGTGTTAAAGATAT
gi|3 : catacacatttAAAA-TATTCAAAACTTTATTCATAACTTCTATGAATGTTTAAAAAAAATCTTG--ATCAAAATA----GCAAGTACACA---ACTTCAT-------TAC-T--------CAAAT---------AAGATATATA--CAA-A---GTCT-GTTCATCAG-TGTTAAAGATATACCCTGGACAA-------------AT--CATATC-----TCTG-A------GT-GGACA-GAAaccctggacaaatcatatctctgagtggacagaaagacagatggacaaggtgattccagtat
gi|3 : catacacatttgatatactgtggataatgacagcaaaacacctcccccatatggaaTGGACAGAAAG----ACAGAT-----GGACA-AG--GTGATTCCAGTATagacagatggacaaggtgattccagtat
gi|4 : catacacatttgatatactgtggataatgacagcaaaacacctcccccatatggaaaaaatattcaaaactttattcataacttctatgaatgtttaaaaaaaatcttgatcaaaatagcaagtacacaacttcattactcaaataagatatatacaaagtctgttcatcagtgttaaagatataccctggacaaatcatatctctgag--CA-ACCC----TC-A-A------A-----AA-AAA-A------ATCCT-T----CACTTCTTAGAATG-TT---AAAAAA-TCTTCATC-TAAATACCAGGTGCACAACTTCTTGAT--C-CAT--ATA--CGATAA-TCACAAGGTTTCAATAAGATCTGTT-T-ATTGGTGTGAAAGACAT
gi|5 : taaagacctcCAAGACAAACTCTGGATAATGAC-AG-----CATAACA-ACCACCACTC-A-ATTTAAAAT-GGGGATAAATT------A-TCTAC----AATTTCCTTGAATGTTT---AAAAAG-TCTCAATCTGAGGTAACAG--ACTCTTCCTTACTAT--T-TAT--GTA--AGATAT-ACACAAAGTCTCAATCAATTCTG-TAC-ATCGGTGTTCAAGGTATactatgaacaaattgtatctgagaacagacacacagacaaggtgactgaaacacaccttgtaaac
gi|6 : gaatacataataTCATCATCTT-CAT--GCA--ACATATTACATAAAGTTTTAA----A---------ATTGGTGTTAAAGATAT
gi|7 : acattttcattacTATCAAGTGCACAATTTCATTAT--T-CAC--ATACGAAATAT-ACACAAAGTTTTAACTAAATCTGAT-C-ATCAGTTTTAAAGATAaatctggataaattacatctatggacaaacagatggacaagatgattccagactggaatttccagtgtagtatacccctttgcttgtgggggtgta
gi|7 : TGGATGGACAG----ACAAAC-----AGG--------TGATTCTAGAATACCCgactccgaataaattatgtctttggatggacagacaaacaggtgattctagaatacccacttt
gi|8 : tatcaagtgcacaatttcattattcacatacgaaatatacacaaagttttaactaaatctgatcatcagttttaaagatagactccgaataaattatgtcttGACA-CG--GTGATTTCATTACACTCTCGCTTGCCGCCCTCTAAACTTAA-ACAGTAGTCTCTGTGAGAGAACGTTTTACA-AAATATAAC-ACAAAGTCCATACAGTTATAAA-AGTAATCTGTAAAATTA---AAAA---TGCCCAacttt
gi|9 : ATGTT---AAAAAATCTCA--ATAAAAATG----ACATGAGCATA---ACTTCATTATA---TACATTATATATGC--AT---------AAAGTTAAAAT-CAATTT-TGTCT-A--------TTTTTTAAAATAAACTTTAGACAATGAC-atcgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): ATGATTTTTGAAATATAATCTGGACAACAAAACATCATGTCTGTGACTGGATAGATGGACATGGTGATCCCATAATAC
Alignments
lowQualScore : 11111 44444444444 333333333 11 1 2 2 1 111 111 111 111 2222 111 888888888888888888888888888888 11 2222 33333333333 1 555555555555555555555555555555555555555555555555555 111 22222
lowQualScore : 1 0 8888 00000 7 555 4 33333333333 6 66 1 666666666 1 99 6 0 3 6 6 0 777 777 0 0 777 555 1111 1 2 777 0 3 111111111111111111111111111111 33 0000 88888888888 1 0 1 999999 3 777777777777777777777777777777777777777777777777777 1 8 444 8 6 8 1 1 77 5 77 77 5 0 2 8888 1 11111
lowQualScore : . . .... ..... . ... . ........... . .. . ......... . .. . . . . . . ... ... . . ... ... .... . . ... . . .............................. .. .... ........... . . . ...... . ................................................... . . ... . . . . . .. . .. .. . . . .... . .....
lowQualScore : 0 8 5555 00000 3 555 5 22222222222 5 55 0 777777777 0 33 7 7 3 7 7 0 555 555 8 2 555 888 2222 0 0 555 2 2 555555555555555555555555555555 22 8888 88888888888 0 8 0 444444 3 999999999999999999999999999999999999999999999999999 4 0 000 0 4 0 0 7 99 7 99 99 7 1 1 1111 4 77777
consensus : NNNNNNNTACAGACANATGGGCAGACAG----ACAAAC-----GGACA-TG--CTGATTCCANTATACCCTC------CGCCTCCTAAACTTAATGCAGTAGTCTCTGTAAGANAACGTTT---A-AAAAATNACTGCAAAGTCCGTAAAGTT-TAAA-AACAATC-GTAAAA-TA---AAAA---TACCCATAACTTCCTTGAATGTT---AAAGAATCTCG--ATAAAAATG----ACANGTGCGCA---ACTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAAT-CAA-AT-TGTCT-ATTCATCGGTTNTTCAAGATANACTCTGGACAATGACAGCAT--CA-ACC-----TC----A-A------AT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATC-AAAATAGCAGGTGCACAACTTCATTAT--T-CAT--ATA--AGATAT-ACACAAAGTTTTAATCAAATCTG-T-T-ATCGGTGTTAAAGATAT
Reference ( family-35 ) : NNNNNNNTACAGACANATGGGCAGACAG----ACAAAC-----GGACA-TG--CTGATTCCANTATACCCTC------CGCCTCCTAAACTTAATGCAGTAGTCTCTGTAAGANAACGTTT---A-AAAAATNACTGCAAAGTCCGTAAAGTT-TAAA-AACAATC-GTAAAA-TA---AAAA---TACCCATAACTTCCTTGAATGTT---AAAGAATCTCG--ATAAAAATG----ACANGTGCGCA---ACTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAAT-CAA-AT-TGTCT-ATTCATCGGTTNTTCAAGATANACTCTGGACAATGACAGCAT--CA-ACC-----TC----A-A------AT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATC-AAAATAGCAGGTGCACAACTTCATTAT--T-CAT--ATA--AGATAT-ACACAAAGTTTTAATCAAATCTG-T-T-ATCGGTGTTAAAGATAT
gi|1 : TACAGACAAATGGGCAGACAG----GCAAATTGATTGGAGACTG--ATGAGTCCATTATACC----------GCTTCCTAAA-TTAATGCAGTAGTCTCAATAAAAGAAC-------A-GAAAATGACTGCAAC-TCCATAAAGTT-TAAAGAACACTT-ATAAAA-TA---AAAA---TCTCCATGACTACCTTGAATGTT---AAAGACTCTCACAATAAAAATG----ACAGATGCACA---ACTTGATTATA---T---T--------C--AT---------AAAGTTTGAAT-TAA-ATATGTTTTAT--ATTGGTTTTTCAAGATAAACTCTGGACAATGACA---T--CA-ACC-----TC----A-A------ATAGGAAA-AAGTA------ACTCT-T----AACTTCCTTGAATG-TT---AAAAAC-TCTCCATC-AAAATGGCAGGTGCACAACTTTATTAT--T-CAT--ATG--AGGTAT-GCAGAGAATTTTAATCATATCTG-T-T-AGCAGTGTTAAAGATAT
gi|10 : tcatttgCAGACACA--GGCAGACTGACCAACAAAT-----GGACA-TAACCTA--TGCATTACACCCT----------CTCCTTGTTTTTATGCACTATTCTTTGTAAGATAAcc
gi|12 : catatccacagcCAGACAG----ACAGAC-----GGACATTG--CTGATTCCA-TATACCCtat
gi|13 : agaacatgcccgggacaaaacatcaatcatgtctaAGGTGCATAAC---ATTAT--TACATTGATA--ATATTT-GCACAAAGTTTGGATCAAATCTG-T-TCATCAGTc
gi|14 : tatctACAG----ACAAAC-----GGACA-TG--CTGATTCCAACATACCCtt
gi|15 : atcatgtccGCAGACAG----ACATAC-----GGACA-TA--CTGATTTCAATAT--CCTC------Cc
gi|16 : gtctACAG----ACAAAC-----GGACA-TG--CTGATTCCAATATACCCc
gi|17 : tgtatACAG----ACAGAC-----GGACA-TG--CTGATTCCAATA
gi|2 : atcatgtctTACAGACAGATGGGCAGATAG----ACAAAT-----GGAC--TG--TTGATTTCATTATACTCTC----------TCTCAAACTTA-TGCAGTAGTCTTTGTAAGATAACATTT---ATACAAATCAAT---AAGTCCGTAAAGTT-CACATAACTATCAGTAAAA-TG---AAAA---TACACCTAACGTCCTTGAATGTT---AAAGAATCTCA--ATAAAAATGATATACATGTGTGCGAATACTCTATTATAGTCTAT-A--------C--ATGTACACAAAAAAGTTTAAATACAA-AT-TATCC-ATTCAT---TTACTC------TGCCCTGGGCAATGACAACAT--GA-ACCCT---TC----ACA------AA-GGAAATAAATA--------TCCCC----AACTCTATTGAGTG-CT---AAAAAATTCTCAAGA-AAAATAGC
gi|3 : tcacatcGATATACTGTGGATAATGACAGCAA--AACACC-----TCCCCCA-T------AT-GGAAA-AAATATTCAAAACTTTATTCATAACTTCTATGAATG-TTTAAAAAAAA-TCTTGATC-AAAATAGCAAGTACACAACTTCATTAC--T-CAA--ATA--AGATAT-ATACAAAGT-----------CTG-T-TCATCAGTGTTAAAGATAT
gi|3 : catacacatttAAAA-TATTCAAAACTTTATTCATAACTTCTATGAATGTTTAAAAAAAATCTTG--ATCAAAATA----GCAAGTACACA---ACTTCAT-------TAC-T--------CAAAT---------AAGATATATA--CAA-A---GTCT-GTTCATCAG-TGTTAAAGATATACCCTGGACAA-------AT--CATATC-----TCT---G-A------GT-GGACA-GAAaccctggacaaatcatatctctgagtggacagaaagacagatggacaaggtgattccagtat
gi|3 : catacacatttgatatactgtggataatgacagcaaaacacctcccccatatggaaTGGACAGAAAG----ACAGAT-----GGACA-AG--GTGATTCCAGTATagacagatggacaaggtgattccagtat
gi|4 : catacacatttgatatactgtggataatgacagcaaaacacctcccccatatggaaaaaatattcaaaactttattcataacttctatgaatgtttaaaaaaaatcttgatcaaaatagcaagtacacaacttcattactcaaataagatatatacaaagtctgttcatcagtgttaaagatataccctggacaaatcatatctctgag--CA-ACCC----TC----A-A------A-----AA-AAA-A------ATCCT-T----CACTTCTTAGAATG-TT---AAAAAA-TCTTCATC-TAAATACCAGGTGCACAACTTCTTGAT--C-CAT--ATA--CGATAA-TCACAAGGTTTCAATAAGATCTGTT-T-ATTGGTGTGAAAGACAT
gi|5 : taaagacctcCAAGACAAACTCTGGATAATGACAGCATAACA-ACCACCACTC----A-ATTTAAAAT-GGGGATAAATT------A-TCTAC----AATTTCCTTGAATGTTT---AAAAAG-TCTCAATCTGAGGTAACAG--ACTCTTCCTTACTAT--T-TAT--GTA--AGATAT-ACACAAAGTCTCAATCAATTCTG-TAC-ATCGGTGTTCAAGGTATactatgaacaaattgtatctgagaacagacacacagacaaggtgactgaaacacaccttgtaaac
gi|6 : gaatacataataTCATCATCTT-CAT--GCA--ACATATTACATAAAGTTTTAA----A---------ATTGGTGTTAAAGATAT
gi|7 : acattttcattacTATCAAGTGCACAATTTCATTAT--T-CAC--ATACGAAATAT-ACACAAAGTTTTAACTAAATCTGAT-C-ATCAGTTTTAAAGATAaatctggataaattacatctatggacaaacagatggacaagatgattccagactggaatttccagtgtagtatacccctttgcttgtgggggtgta
gi|7 : TGGATGGACAG----ACAAAC-----AGG--------TGATTCTAGAATACCCgactccgaataaattatgtctttggatggacagacaaacaggtgattctagaatacccacttt
gi|8 : tatcaagtgcacaatttcattattcacatacgaaatatacacaaagttttaactaaatctgatcatcagttttaaagatagactccgaataaattatgtcttGACA-CG--GTGATTTCATTACACTCTCGCTTGCCGCCCTCTAAACTTAA-ACAGTAGTCTCTGTGAGAGAACGTTTTACA-AAATATAAC-ACAAAGTCCATACAGTTATAAA-AGTAATCTGTAAAATTA---AAAA---TGCCCAacttt
gi|9 : ATGTT---AAAAAATCTCA--ATAAAAATG----ACATGAGCATA---ACTTCATTATA---TACATTATATATGC--AT---------AAAGTTAAAAT-CAATTT-TGTCT-A--------TTTTTTAAAATAAACTTTAGACAATGACatcgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): ATGATTTTTGAAATATAATCTGGACAACAAAACATCATGTCTGTGACTGGATAGATGGACATGGTGATCCCATAATAC
Alignments
lowQualScore : 11111 44444444444 333333333 11 1 2 2 1 111 111 111 111 2222 111 888888888888888888888888888888 11 2222 33333333333 1 555555555555555555555555555555555555555555555555555 111 22222
lowQualScore : 1 0 8888 00000 7 555 4 33333333333 6 66 1 666666666 1 99 6 0 3 6 6 0 777 777 0 0 777 555 1111 1 2 777 0 3 111111111111111111111111111111 33 0000 88888888888 1 0 1 999999 3 777777777777777777777777777777777777777777777777777 1 8 444 8 6 8 1 1 77 5 77 77 5 0 2 8888 1 11111
lowQualScore : . . .... ..... . ... . ........... . .. . ......... . .. . . . . . . ... ... . . ... ... .... . . ... . . .............................. .. .... ........... . . . ...... . ................................................... . . ... . . . . . .. . .. .. . . . .... . .....
lowQualScore : 0 8 5555 00000 3 555 5 22222222222 5 55 0 777777777 0 33 7 7 3 7 7 0 555 555 8 2 555 888 2222 0 0 555 2 2 555555555555555555555555555555 22 8888 88888888888 0 8 0 444444 3 999999999999999999999999999999999999999999999999999 4 0 000 0 4 0 0 7 99 7 99 99 7 1 1 1111 4 77777
consensus : NNNNNNNTACAGACANATGGGCAGACAG----ACAAAC-----GGACA-TG--CTGATTCCANTATACCCTC------CGCCTCCTAAACTTAATGCAGTAGTCTCTGTAAGANAACGTTT---A-AAAAATNACTGCAAAGTCCGTAAAGTT-TAAA-AACAATC-GTAAAA-TA---AAAA---TACCCATAACTTCCTTGAATGTT---AAAGAATCTCG--ATAAAAATG----ACANGTGCGCA---ACTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAAT-CAA-AT-TGTCT-ATTCATCGGTTNTTCAAGATANACTCTGGACAATGACAGCAT--CA-ACC-----TC----A-A------AT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATC-AAAATAGCAGGTGCACAACTTCATTAT--T-CAT--ATA--AGATAT-ACACAAAGTTTTAATCAAATCTG-T-T-ATCGGTGTTAAAGATAT
Reference ( family-35 ) : NNNNNNNTACAGACANATGGGCAGACAG----ACAAAC-----GGACA-TG--CTGATTCCANTATACCCTC------CGCCTCCTAAACTTAATGCAGTAGTCTCTGTAAGANAACGTTT---A-AAAAATNACTGCAAAGTCCGTAAAGTT-TAAA-AACAATC-GTAAAA-TA---AAAA---TACCCATAACTTCCTTGAATGTT---AAAGAATCTCG--ATAAAAATG----ACANGTGCGCA---ACTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAAT-CAA-AT-TGTCT-ATTCATCGGTTNTTCAAGATANACTCTGGACAATGACAGCAT--CA-ACC-----TC----A-A------AT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATC-AAAATAGCAGGTGCACAACTTCATTAT--T-CAT--ATA--AGATAT-ACACAAAGTTTTAATCAAATCTG-T-T-ATCGGTGTTAAAGATAT
gi|1 : TACAGACAAATGGGCAGACAG----GCAAATTGATTGGAGACTG--ATGAGTCCATTATACC----------GCTTCCTAAA-TTAATGCAGTAGTCTCAATAAAAGAAC-------A-GAAAATGACTGCAAC-TCCATAAAGTT-TAAAGAACACTT-ATAAAA-TA---AAAA---TCTCCATGACTACCTTGAATGTT---AAAGACTCTCACAATAAAAATG----ACAGATGCACA---ACTTGATTATA---T---T--------C--AT---------AAAGTTTGAAT-TAA-ATATGTTTTAT--ATTGGTTTTTCAAGATAAACTCTGGACAATGACA---T--CA-ACC-----TC----A-A------ATAGGAAA-AAGTA------ACTCT-T----AACTTCCTTGAATG-TT---AAAAAC-TCTCCATC-AAAATGGCAGGTGCACAACTTTATTAT--T-CAT--ATG--AGGTAT-GCAGAGAATTTTAATCATATCTG-T-T-AGCAGTGTTAAAGATAT
gi|10 : tcatttgCAGACACA--GGCAGACTGACCAACAAAT-----GGACA-TAACCTA--TGCATTACACCCT----------CTCCTTGTTTTTATGCACTATTCTTTGTAAGATAAcc
gi|12 : catatccacagcCAGACAG----ACAGAC-----GGACATTG--CTGATTCCA-TATACCCtat
gi|13 : agaacatgcccgggacaaaacatcaatcatgtctaAGGTGCATAAC---ATTAT--TACATTGATA--ATATTT-GCACAAAGTTTGGATCAAATCTG-T-TCATCAGTc
gi|14 : tatctACAG----ACAAAC-----GGACA-TG--CTGATTCCAACATACCCtt
gi|15 : atcatgtccGCAGACAG----ACATAC-----GGACA-TA--CTGATTTCAATAT--CCTC------Cc
gi|16 : gtctACAG----ACAAAC-----GGACA-TG--CTGATTCCAATATACCCc
gi|17 : tgtatACAG----ACAGAC-----GGACA-TG--CTGATTCCAATA
gi|2 : atcatgtctTACAGACAGATGGGCAGATAG----ACAAAT-----GGAC--TG--TTGATTTCATTATACTCTC----------TCTCAAACTTA-TGCAGTAGTCTTTGTAAGATAACATTT---ATACAAATCAAT---AAGTCCGTAAAGTT-CACATAACTATCAGTAAAA-TG---AAAA---TACACCTAACGTCCTTGAATGTT---AAAGAATCTCA--ATAAAAATGATATACATGTGTGCGAATACTCTATTATAGTCTAT-A--------C--ATGTACACAAAAAAGTTTAAATACAA-AT-TATCC-ATTCAT---TTACTC------TGCCCTGGGCAATGACAACAT--GA-ACCCT---TC----ACA------AA-GGAAATAAATA--------TCCCC----AACTCTATTGAGTG-CT---AAAAAATTCTCAAGA-AAAATAGC
gi|3 : tcacatcGATATACTGTGGATAATGACAGCAA--AACACC-----TCCCCCA-T------AT-GGAAA-AAATATTCAAAACTTTATTCATAACTTCTATGAATG-TTTAAAAAAAA-TCTTGATC-AAAATAGCAAGTACACAACTTCATTAC--T-CAA--ATA--AGATAT-ATACAAAGT-----------CTG-T-TCATCAGTGTTAAAGATAT
gi|3 : catacacatttAAAA-TATTCAAAACTTTATTCATAACTTCTATGAATGTTTAAAAAAAATCTTG--ATCAAAATA----GCAAGTACACA---ACTTCAT-------TAC-T--------CAAAT---------AAGATATATA--CAA-A---GTCT-GTTCATCAG-TGTTAAAGATATACCCTGGACAA-------AT--CATATC-----TCT---G-A------GT-GGACA-GAAaccctggacaaatcatatctctgagtggacagaaagacagatggacaaggtgattccagtat
gi|3 : catacacatttgatatactgtggataatgacagcaaaacacctcccccatatggaaTGGACAGAAAG----ACAGAT-----GGACA-AG--GTGATTCCAGTATagacagatggacaaggtgattccagtat
gi|4 : catacacatttgatatactgtggataatgacagcaaaacacctcccccatatggaaaaaatattcaaaactttattcataacttctatgaatgtttaaaaaaaatcttgatcaaaatagcaagtacacaacttcattactcaaataagatatatacaaagtctgttcatcagtgttaaagatataccctggacaaatcatatctctgag--CA-ACCC----TC----A-A------A-----AA-AAA-A------ATCCT-T----CACTTCTTAGAATG-TT---AAAAAA-TCTTCATC-TAAATACCAGGTGCACAACTTCTTGAT--C-CAT--ATA--CGATAA-TCACAAGGTTTCAATAAGATCTGTT-T-ATTGGTGTGAAAGACAT
gi|5 : taaagacctcCAAGACAAACTCTGGATAATGACAGCATAACA-ACCACCACTC----A-ATTTAAAAT-GGGGATAAATT------A-TCTAC----AATTTCCTTGAATGTTT---AAAAAG-TCTCAATCTGAGGTAACAG--ACTCTTCCTTACTAT--T-TAT--GTA--AGATAT-ACACAAAGTCTCAATCAATTCTG-TAC-ATCGGTGTTCAAGGTATactatgaacaaattgtatctgagaacagacacacagacaaggtgactgaaacacaccttgtaaac
gi|6 : gaatacataataTCATCATCTT-CAT--GCA--ACATATTACATAAAGTTTTAA----A---------ATTGGTGTTAAAGATAT
gi|7 : acattttcattacTATCAAGTGCACAATTTCATTAT--T-CAC--ATACGAAATAT-ACACAAAGTTTTAACTAAATCTGAT-C-ATCAGTTTTAAAGATAaatctggataaattacatctatggacaaacagatggacaagatgattccagactggaatttccagtgtagtatacccctttgcttgtgggggtgta
gi|7 : TGGATGGACAG----ACAAAC-----AGG--------TGATTCTAGAATACCCgactccgaataaattatgtctttggatggacagacaaacaggtgattctagaatacccacttt
gi|8 : tatcaagtgcacaatttcattattcacatacgaaatatacacaaagttttaactaaatctgatcatcagttttaaagatagactccgaataaattatgtcttGACA-CG--GTGATTTCATTACACTCTCGCTTGCCGCCCTCTAAACTTAA-ACAGTAGTCTCTGTGAGAGAACGTTTTACA-AAATATAAC-ACAAAGTCCATACAGTTATAAA-AGTAATCTGTAAAATTA---AAAA---TGCCCAacttt
gi|9 : ATGTT---AAAAAATCTCA--ATAAAAATG----ACATGAGCATA---ACTTCATTATA---TACATTATATATGC--AT---------AAAGTTAAAAT-CAATTT-TGTCT-A--------TTTTTTAAAATAAACTTTAGACAATGACatcgt
blockSeqs : C ACCA . T ACC T CGCTTGCCGCC T AT T GTTTTACA C T G A T A T TTC CTT TAA A ATAT T G AAT T GTCTATACATGTACACAAA TA TTT GTTCATCAG A T GCATAA C TCCCCCATATGGAAAAAATATTCAAAACTTTATTCAT A T TAA T A T G T CT A TG CG T G TCAA T TTC
blockSeqs : G . . . C A C C T T ATTTAT A A G . . T . . . . G . A A . T TACATTATATATGCAT T AT ATTCATT G T ACAT T ACCACTCAATTTAAAATGGGGATAAATTATCTAC T . . . G . G T . . . . . C TAAG T TTC
blockSeqs : . . . C A C C A G . . . . A . T A . . TACTCAAAT . A AT T T GCAA . CTTCACAAAGGAAATAAATATCCCC T . . . C . C C . . . . . C TCAA T TTT
blockSeqs : . . . C A A AT . CTCAAAAAAAAAATCCTT C . . . A . A T . . . . . T CTAA T TAC
blockSeqs : . . . C A A . T . . . . . . T . . ATC
blockSeqs : . . . C T . . . . . . . . .
blockSeqs : . . . T G
blockSeqs : . . . G G
blockSeqs : . . . G T
blockSeqs : . . .
blockSeqCons : ***** GCAT** TTC**
originalCons : NNNNNNNTACAGACANATGGGCAGACAG----ACAAAC-----GGACA-TG--CTGATTCCANTATACCCTC------CGCCTCCTAAACTTAATGCAGTAGTCTCTGTAAGANAACGTTT---A-AAAAATNACTGCAAAGTCCGTAAAGTT-TAAA-AACAATC-GTAAAA-TA---AAAA---TACCCATAACTTCCTTGAATGTT---AAAGAATCTCG--ATAAAAATG----ACANGTGCGCA---ACTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAAT-CAA-AT-TGTCT-ATTCATCGGTTNTTCAAGATANACTCTGGACAATGACAGCAT--CA-ACC-----TC----A-A------AT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATC-AAAATAGCAGGTGCACAACTTCATTAT--T-CAT--ATA--AGATAT-ACACAAAGTTTTAATCAAATCTG-T-T-ATCGGTGTTAAAGATAT
finalCons : NNNNNNNTACAGACANATGGGCAGACAG----ACAAAC-----GGACA-TG--CTGATTCCANTATACCCTC------CGCCTCCTAAACTTAATGCAGTAGTCTCTGTAAGANAACGTTT---A-AAAAATNACTGCAAAGTCCGTAAAGTT-TAAA-AACAATC-GTAAAA-TA---AAAA---TACCCATAACTTCCTTGAATGTT---AAAGAATCTCG--ATAAAAATG----ACANGTGCGCA---ACTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAAT-CAA-AT-TGTCT-ATTCATCGGTTNTTCAAGATANACTCTGGACAATGACAGCAT--CA-ACC-----TC----A-A------AT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATC-AAAATAGCAGGTGCACAACTTCATTAT--T-CAT--ATA--AGATAT-ACACAAAGTTTTAATCAAATCTGTTC--ATCGGTGTTAAAGATAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): ATGATTTTTGAAATATAATCTGGACAACAAAACATCATGTCTGTGACTGGATAGATGGACATGGTGATCCCATAATAC
Alignments
lowQualScore : 11111 44444444444 333333333 11 1 2 2 1 111 111 111 111 2222 111 888888888888888888888888888888 11 2222 33333333333 1 555555555555555555555555555555555555555555555555555 111
lowQualScore : 1 0 8888 00000 7 555 4 33333333333 6 66 1 666666666 1 99 6 0 3 6 6 0 777 777 0 0 777 555 1111 1 2 777 0 3 111111111111111111111111111111 33 0000 88888888888 1 0 1 999999 3 777777777777777777777777777777777777777777777777777 1 8 444 8 6 8 1 1 77 5 77 77 5 0 2 8888 1 3
lowQualScore : . . .... ..... . ... . ........... . .. . ......... . .. . . . . . . ... ... . . ... ... .... . . ... . . .............................. .. .... ........... . . . ...... . ................................................... . . ... . . . . . .. . .. .. . . . .... . .
lowQualScore : 0 8 5555 00000 3 555 5 22222222222 5 55 0 777777777 0 33 7 7 3 7 7 0 555 555 8 2 555 888 2222 0 0 555 2 2 555555555555555555555555555555 22 8888 88888888888 0 8 0 444444 3 999999999999999999999999999999999999999999999999999 4 0 000 0 4 0 0 7 99 7 99 99 7 1 1 1111 4 0
consensus : NNNNNNNTACAGACANATGGGCAGACAG----ACAAAC-----GGACA-TG--CTGATTCCANTATACCCTC------CGCCTCCTAAACTTAATGCAGTAGTCTCTGTAAGANAACGTTT---A-AAAAATNACTGCAAAGTCCGTAAAGTT-TAAA-AACAATC-GTAAAA-TA---AAAA---TACCCATAACTTCCTTGAATGTT---AAAGAATCTCG--ATAAAAATGA----CANGTGCGCAA---CTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAAT-CAA-AT-TGTCT-ATTCATCGGTTNTTCAAGATANACTCTGGACAATGACAGCAT--CA-ACC-----TC----A-A------AT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATC-AAAATAGCAGGTGCACAACTTCATTAT--T-CAT--ATA--AGATAT-ACACAAAGTTTTAATCAAATCTGTTCATCGGTGTTAAAGATAT
Reference ( family-35 ) : NNNNNNNTACAGACANATGGGCAGACAG----ACAAAC-----GGACA-TG--CTGATTCCANTATACCCTC------CGCCTCCTAAACTTAATGCAGTAGTCTCTGTAAGANAACGTTT---A-AAAAATNACTGCAAAGTCCGTAAAGTT-TAAA-AACAATC-GTAAAA-TA---AAAA---TACCCATAACTTCCTTGAATGTT---AAAGAATCTCG--ATAAAAATGA----CANGTGCGCAA---CTTCATTATA---TAC-T--------C--AT---------AAAGTTTAAAT-CAA-AT-TGTCT-ATTCATCGGTTNTTCAAGATANACTCTGGACAATGACAGCAT--CA-ACC-----TC----A-A------AT-GGAAA-AAATA------ACTCTAT----AACTTCCTTGAATG-TT---AAAAAA-TCTCGATC-AAAATAGCAGGTGCACAACTTCATTAT--T-CAT--ATA--AGATAT-ACACAAAGTTTTAATCAAATCTGTTCATCGGTGTTAAAGATAT
gi|1 : TACAGACAAATGGGCAGACAG----GCAAATTGATTGGAGACTG--ATGAGTCCATTATACC----------GCTTCCTAAA-TTAATGCAGTAGTCTCAATAAAAGAAC-------A-GAAAATGACTGCAAC-TCCATAAAGTT-TAAAGAACACTT-ATAAAA-TA---AAAA---TCTCCATGACTACCTTGAATGTT---AAAGACTCTCACAATAAAAATGA----CAGATGCACAA---CTTGATTATA---T---T--------C--AT---------AAAGTTTGAAT-TAA-ATATGTTTTAT--ATTGGTTTTTCAAGATAAACTCTGGACAATGACA---T--CA-ACC-----TC----A-A------ATAGGAAA-AAGTA------ACTCT-T----AACTTCCTTGAATG-TT---AAAAAC-TCTCCATC-AAAATGGCAGGTGCACAACTTTATTAT--T-CAT--ATG--AGGTAT-GCAGAGAATTTTAATCATATCTGTT-AGCAGTGTTAAAGATAT
gi|10 : tcatttgCAGACACA--GGCAGACTGACCAACAAAT-----GGACA-TAACCTA--TGCATTACACCCT----------CTCCTTGTTTTTATGCACTATTCTTTGTAAGATAAcc
gi|12 : catatccacagcCAGACAG----ACAGAC-----GGACATTG--CTGATTCCA-TATACCCtat
gi|13 : agaacatgcccgggacaaaacatcaatcatgtctaAGGTGCATAAC---ATTAT--TACATTGATA--ATATTT-GCACAAAGTTTGGATCAAATCTGTTCATCAGTc
gi|14 : tatctACAG----ACAAAC-----GGACA-TG--CTGATTCCAACATACCCtt
gi|15 : atcatgtccGCAGACAG----ACATAC-----GGACA-TA--CTGATTTCAATAT--CCTC------Cc
gi|16 : gtctACAG----ACAAAC-----GGACA-TG--CTGATTCCAATATACCCc
gi|17 : tgtatACAG----ACAGAC-----GGACA-TG--CTGATTCCAATA
gi|2 : atcatgtctTACAGACAGATGGGCAGATAG----ACAAAT-----GGAC--TG--TTGATTTCATTATACTCTC----------TCTCAAACTTA-TGCAGTAGTCTTTGTAAGATAACATTT---ATACAAATCAAT---AAGTCCGTAAAGTT-CACATAACTATCAGTAAAA-TG---AAAA---TACACCTAACGTCCTTGAATGTT---AAAGAATCTCA--ATAAAAATGATATACATGTGTGCGAATACTCTATTATAGTCTAT-A--------C--ATGTACACAAAAAAGTTTAAATACAA-AT-TATCC-ATTCAT---TTACTC------TGCCCTGGGCAATGACAACAT--GA-ACCCT---TC----ACA------AA-GGAAATAAATA--------TCCCC----AACTCTATTGAGTG-CT---AAAAAATTCTCAAGA-AAAATAGC
gi|3 : tcacatcGATATACTGTGGATAATGACAGCAA--AACACC-----TCCCCCA-T------AT-GGAAA-AAATATTCAAAACTTTATTCATAACTTCTATGAATG-TTTAAAAAAAA-TCTTGATC-AAAATAGCAAGTACACAACTTCATTAC--T-CAA--ATA--AGATAT-ATACAAAGT-----------CTGTTCATCAGTGTTAAAGATAT
gi|3 : catacacatttAAAA-TATTCAAAACTTTATTCATAACTTCTATGAATGTTTAAAAAAAATCTTG--ATCAAAATAG----CAAGTACACAA---CTTCAT-------TAC-T--------CAAAT---------AAGATATATA--CAA-A---GTCT-GTTCATCAG-TGTTAAAGATATACCCTGGACAA-------AT--CATATC-----TCT---G-A------GT-GGACA-GAAaccctggacaaatcatatctctgagtggacagaaagacagatggacaaggtgattccagtat
gi|3 : catacacatttgatatactgtggataatgacagcaaaacacctcccccatatggaaTGGACAGAAAG----ACAGAT-----GGACA-AG--GTGATTCCAGTATagacagatggacaaggtgattccagtat
gi|4 : catacacatttgatatactgtggataatgacagcaaaacacctcccccatatggaaaaaatattcaaaactttattcataacttctatgaatgtttaaaaaaaatcttgatcaaaatagcaagtacacaacttcattactcaaataagatatatacaaagtctgttcatcagtgttaaagatataccctggacaaatcatatctctgag--CA-ACCC----TC----A-A------A-----AA-AAA-A------ATCCT-T----CACTTCTTAGAATG-TT---AAAAAA-TCTTCATC-TAAATACCAGGTGCACAACTTCTTGAT--C-CAT--ATA--CGATAA-TCACAAGGTTTCAATAAGATCTGTTTATTGGTGTGAAAGACAT
gi|5 : taaagacctcCAAGACAAACTCTGGATAATGACAGCATAACA-ACCACCACTC----A-ATTTAAAAT-GGGGATAAATT------A-TCTAC----AATTTCCTTGAATGTTT---AAAAAG-TCTCAATCTGAGGTAACAG--ACTCTTCCTTACTAT--T-TAT--GTA--AGATAT-ACACAAAGTCTCAATCAATTCTGTACATCGGTGTTCAAGGTATactatgaacaaattgtatctgagaacagacacacagacaaggtgactgaaacacaccttgtaaac
gi|6 : gaatacataataTCATCATCTT-CAT--GCA--ACATATTACATAAAGTTTTAA----A-------ATTGGTGTTAAAGATAT
gi|7 : acattttcattacTATCAAGTGCACAATTTCATTAT--T-CAC--ATACGAAATAT-ACACAAAGTTTTAACTAAATCTGATCATCAGTTTTAAAGATAaatctggataaattacatctatggacaaacagatggacaagatgattccagactggaatttccagtgtagtatacccctttgcttgtgggggtgta
gi|7 : TGGATGGACAG----ACAAAC-----AGG--------TGATTCTAGAATACCCgactccgaataaattatgtctttggatggacagacaaacaggtgattctagaatacccacttt
gi|8 : tatcaagtgcacaatttcattattcacatacgaaatatacacaaagttttaactaaatctgatcatcagttttaaagatagactccgaataaattatgtcttGACA-CG--GTGATTTCATTACACTCTCGCTTGCCGCCCTCTAAACTTAA-ACAGTAGTCTCTGTGAGAGAACGTTTTACA-AAATATAAC-ACAAAGTCCATACAGTTATAAA-AGTAATCTGTAAAATTA---AAAA---TGCCCAacttt
gi|9 : ATGTT---AAAAAATCTCA--ATAAAAATGA----CATGAGCATAA---CTTCATTATA---TACATTATATATGC--AT---------AAAGTTAAAAT-CAATTT-TGTCT-A--------TTTTTTAAAATAAACTTTAGACAATGACatcgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): ATGATTTTTGAAATATAATCTGGACAACAAAACATCATGTCTGTGACTGGATAGATGGACATGGTGATCCCATAATAC