lowQualScore : 1111 333333 11 33333333333333333333333 111 222222 11 111 1 111111111 22 22222222 3 2 1111 555555
lowQualScore : 3 1111 6 555555 3 55 5 0 4 88888888888888888888888 1 000 2 5 333333 00 9 555 00 2 4 3 3 3 3 5 44 3 3 333 2 33 1 333333333 3 3 555 44 6666 5 1 66 444 5 33 2 66666 2 2 777777 66666666 9999 33 2 66 2 33 0 1 44 55 66666 444 444 4 2 5 2 2 2 5 5555 44 44 0 333333 3 44
lowQualScore : . .... . ...... . .. . . . ....................... . ... . . ...... .. . ... .. . . . . . . . .. . . ... . .. . ......... . . ... .. .... . . .. ... . .. . ..... . . ...... ........ .... .. . .. . .. . . .. .. ..... ... ... . . . . . . . .... .. .. . ...... . ..
lowQualScore : 5 5555 7 888888 2 77 7 7 3 66666666666666666666666 7 000 1 7 777777 00 4 000 22 4 0 3 3 3 3 7 22 1 1 777 9 77 6 333333333 3 3 888 22 1111 7 2 33 777 3 77 7 77777 7 7 777777 22222222 0000 77 7 33 7 77 3 0 00 99 22222 444 000 7 7 3 9 9 9 7 8888 22 22 8 777777 1 22
consensus : NGTATATTTTTCCATTATAT--G-AGT------TGTAGTTAGGCCATGTAT-ACTGGTAGTTGT-----------ACGT--------GCTTTTT---GAGTTNT-TTTT---T--ACATAGGACAGTTGTATGTATGTTATTTTCCTATTACAC-TGTTC-AG-TGA-TTT-TATTNTT--GGCATTTT-AATA-AATG-C-TC-ATAAAC--AACACAATTTC---------CTATTACAC-TG-TTCA---GTGATTT----TT-ATTAT--TGGCA---TTT-TA--ATA-AATG-----C-T-C------AT----A-A-CAA--C-AC--AAT-TT--G-A--ATTACTCTTATTTCTTGGGCA-AAA-----AAC---A-A-AGCAGAGTAG-ACT-T-TGG-TAGAAA-GACTTAATCAC-GTCTG--TGTG--TTGTATA----GCCTGA-GAC--GATGGTATA
Reference ( gi|2 ) : AGTATATTTTTCCATTATAT--G-AGT------TGTAGTTAGGCCATGTAT-ACTGGTAGTTGT-----------ATGT--------GCTTTTT---GAGTTAT-TTTT---T--ACATAGGACAGTTGTATGTATGTTATTTTCCTATTACAC-TGTTC-AG-TGA-TTT-TATTTTT--GGCATTTT-AATA-AATG-C-TC-ATAAAC--AACACAATTTC---------CTATTACAC-TG-TTCA---GTG--TT----TT-ATTAT--TGGCA---TTT-TA--ATA-AATG-----C-T-C------AT----A-A-CAA--C-AC--AAT-TT--G-A--ATTGCTTTTATTTCTTGGGCA-AAA-----AAC---A-A-AGCAG-GTAG-ACT-T-T-G-TAGAAA-GACTTAATCAC-GTCTG--TGTG--TTGTATGAC--GCCTGA-GAC--GATGGTATA
gi|1 : GTATATTTTTCCATTATAT--G-AGG------TGTAGTTAGGCAATGTAT-ACTGGTAGTTGTTTGTTAGTTGTATGT--------GCTTTTT---GAGTTAT-TTTT---TTTACATAGGACAGTT--------------TTCCTATTACAC-TGTTC-AG-TGA-TTT-TATTATT--GGCATTTT-AATA-AATG-C-GC-ATAAAC--AACACAATTTC---------CTATTACAC-TG-TTCA---GTGT-TT----TT-ATTAT--TGGCA---TTT-TATTATA-AATG-----C-T-C------AT----A-AGCAA--C-AC--AAT-TT--G-A--ATTACTTTTATTTCTTGGGCA-AAA-----AAC---A-A-AGCAGAGTAG-ACT-T-TGG-TAGACA-TACTTAATCAC-GTCTG--TGTG--TTGTATA----GCCTGA-GAC--GATGGTATA
gi|5 : TATATTTTTCCATTAT-T--G-AGT------TG------------GTATTACTGGTAGTTGT-----------ATGT--------G-TTTTT---GAGTTAT-TTTT------ACATAGGACAGT-GTATGT-TGT-ATTTTC-TATTACAC-TGTTC-AGCTGA-TTT-TATTTTTTTGGCATTTT-AATA-AATGAC-TC-ATAT-C--AACACA-TTTC---------CTATTACAC-TG-ATCA---GTG--TTCTTTTT-ATTAT--TGGCA---TT---A--ATA-AATG-----C---C------ATA---A-A-CAA--CGAC---AT-TT--G-A--ATTGCTTTTA-TTCTT-GGC--AAA-----AAC---A-A-AGCAGAGTAG-ACT-T-TGG-TAGAAA-GACTTAATCAA-CTCTG--TGTG--TTGTA-G------CTGA-GACGTGATGGa
gi|3 : TATATTTT-CCATTATATTGA-AGT------TGTAG-TAGG-CATGTAT-ACTGGTAGTTGT-----------ATGT--------GCTTTTT---GAGTTTT-TTTT---T--GCATCGGAC-GTTGTATGTATG-TATTTTCCTAATTCAC-TGTTCAAG-TGA-TTT-TATTTTT--GGCATTTTAAATA-A--G-C-TC-ATAA----AACACATTTTC---------CTATT-CAC-TGTTTCA---GTT--TT----TT-ATTAT--TGGCA----AT-TA--ATA-CATG-----C-T-CCATTAAAT------A-CAA----AC--AAT-TT--GAA--ATTGTTTTTATTTCT--GGCACAAA-----AAC---A-AGAGCAGAGTAGAACT-T-TGG-TAG-AA-GACTTAAT-AC-GTCTGTTTGTGGTTTGTATAG-----CTGA-GAC--GATGGTATA
gi|4 : TATTTTTCCATTAT----G-AGT------TGTAGTTAG-CCATGTAT-ACTGGTAGTTGT-----------ATG---------GCTTTTT---GAGTTAT-TTTT---T--ACA--AGACAGTTGTAT-TATGTTATTTCC--ATTACAC-TTTTC-AG--GA-TTT-TATTTTT--TGCATTTT-AATACAATG-C-TCGATAAAC--AACACAATTTC---------CTAT-ACAC-TG-TTCG---GTG--TT----TTTATTAT--TGGCA---TTTGTA--ATA-AATG-----C-T-C------AC----A-AACAA--C-AC--AAT-TTT-G-A--ATTGCTTTTATTTTTTGG-CA-AAA-----AAC---ACA-AGCCGAGTAG-ACT-T-T-G-TAAAAG-GACTTAATCAC-GTCTG--TGTG--TT-TATA----GCCTGATGAC--A--GGTATAa
gi|6 : TTTACATAATAT--GTAGTATACTGTGTAGTTAGATCATGTAT-ACTTGTA--TGT-----------ACGTTTTTAGTTATTTTTT---AAGTTTT-TTTTATTT--ACAGTGGACAGT-GT---TATGCTATTTTTCTATTACAC-TGTTC-AA-TGA-TTTCTATTGCT--GCCGTTTT-GAAA-AATG-T-TT-CTACGC--AACACAATTT
gi|7 : tattgtgaactcaTTTACAT-ATAT--G-TGTATACG-TGTAGTTAGATCATGTAT-ACTTGTA--TGT-----------ACGTTTTTA---GTTTTTTTTTAAGTTTT-TTTTAT-T--ACGT-GGACAGT-GT---TA-GCTATTTTTCTATTACACCTGTTC-AA-TGA-TTTCTATTGCT--GCCGTTTG-AA-A-AATG-T-TT-CTACGC--AACACA--TTT---------GAATTACTC-TA-TCCgaattactcttatccctttaacaaaaaggagtagactttggtagaaagacttaatcacagtatgtattctatacctcctgagataatggtata
gi|8 : aagtattgtgaactcaTAT-ACTTGTAGTTGT-----------GTGT--------GCTTTTT---GAGTTATCTTTT---T--ACATAGGACAGTTGTATGCATGTTATTTTCCTATTACAC-TGTTC-AG-TGATTTT-TATTATT--GGCATTTT-AATA-AATG-C-TC-ATAAAC--AACACAATTTtttaacaaaaaggagtagactttggtagaaagacttaatcacgtatgtattctatactctgagataatggtata
gi|9 : taggatcactagttATAGTTGTATTTATGTTATTTTCCTATTACAC-TGTC---G-TGA--TT-TA-TTTT--GGCATTTT-AATA-AATG-CTTC-ATAAAC--AA-ACAATgaattactcttatttcttgggcaaaaaacaaagcagagtggactttggtagaaagacttaatcacgtatgtgtgttgtatatcctgagacgatggtat
gi|13 : attaagatctcattaccttacacgtactaagtatacttgtatttcatttactcttactgaatgtTTATTTTCCTATTACTC-TGTTC-AG-CGA-TTTCTATTATT--GGCA-TTT-ATTA-AATG-T-TC-ATAAAC--AACACAATTTattgaattgcttttatttcttgggcaaaacaaagcagagtagacttttagaaagattaattacgttgtgtgttgtatagcctgagacgatggttaataa
gi|10 : attttatttgacatcaagctccTTCC-ATTACAT-TGTTC-AG-TGA-TTTCTGTTGTT--GACATTTT-A--A-AATG----C-GTAAACAAAACACAATCTgaattactcttattccttgggcaaaaacaaagcagagaagacttgggtagaaagacttattcacgtatgttttgtaaagcctgatacgatggtgcaa
gi|16 : ttgcactgagaataattatatatattcatgtcaaataataaacaatatttctctctcaTTT-GG-TAA-TTT-TGTTT----GGCATTTG-AATA-AATG-C-TC-ATTTAC--AACAgaattattccttctccttgagccaaaaccaaagtagagtagactgttggtagaaattacttaatcacagtatgtgcttcgtattcttgcctgagaggatggtat
gi|15 : -AG-TGT-TTT-TATTATT--CGCATTTT-AATA-AATG-C-TC-ATAAAC--AACACAATTTaccacatgaacattatgttatatctggcaaaaaacagagcagagtagactcatggattgagagtgatgtttatatacaagaaaagcaagaacgatggtata
gi|19 : TT--GGCATTTT-AATA-AATG-C-TC-ATAAAC--AACGCAATTTgaattacttttatttcttgggcaaaaaacaaaacagagtagactttggtagaaagacttaatcacgtctgtgtgttgtatagcctgagacgatggtat
gi|10 : -ATAAAC--AATA---TTTCTCTCTCATTCCATTACAT-TG-TTCA---GTGATTT----CT-GTTGT--TGACA---TTT-TA--A---AATG-----C-G-T------A-----A-A-CAAAAC-AC--AAT-CT--G-A--ATTATTCCTTCTCCTTGAGCC-AAA-----ACC---A-A-AGTAGAGTAG-ACTGT-TGG-TAGAAATTACTTAATCACAGTATG--TGCT--TCGTATT-CTTGCCTGA-GAG--GATGGTATgaatt
gi|11 : ttgcactgagaataattatatatattcatgtcaaataTAAAT--AAGACAAT--A---------CTGCTACA--TG-TATATTTGTT--TT----TT-ATTACA-TTGCA---TTCGTA--ATATAATTTCTTTC-T-C------AT----T---CAA----A---GAT-TT--------TTGCTATTATATAT--GGCA-AAC-----AAC---A-G-AGCAGAGTAG-ACTAT-G-G-TAGAAA-GACTT
gi|8 : ttagggtgaattttaagaaatgctgttatgtattgtatgtactttttggttgttctctcttccttgacaggagtaacatatatttTTTC---------CTATTACAC-TG-TTCA---GTGATTT----TT-ATTAT--TGGCA---TTT-TA--ATA-AATG-----C-T-C------AT----A-AACAA--C-AC--AAT-TT--G-A--ATTACTCTTATTTCTTGGGCA-AAA-----AAC---A-A-AGCAGAGTGG-ACT-T-TGG-TAGAAA-GACTTAATCAC-GTATG--TGTG--TTGTAT-AT---CCTGA-GAC--GATGGTAT
gi|9 : taggatcactagtttatacttgtagttgtgtgtgctttttgagttatctttttacataggacagttgtatgcatgttatTTTC---------CTATTACAC-TG-TC-----GTG--AT----TT-ATT-T--TGGCA---TTT-TA--ATA-AATG-----C-TTC------AT----A-AACAA----AC--AATATT--G-A--ATTGCTTTTATTTCTTGGGC---AA-----AAC---A-A-AGCAGAGTAG-ACT-T-T---TAGAAA-GA-TTAATTAC-GT-TG--TGTG--TTGTATA----GCCTGA-GAC--GATGGT
gi|13 : attaagatctcattaccttacacgtactaagtatacttgtatttcatttactcttactgaatgtatagttgtatttatgttatTTTC---------CTATTACTC-TG-TTCA---GCGATTT----CT-ATTAT--TGGCA----TT-TA--TTA-AATG-----T-T-C------ATA---A-A-CAA--C-AC--AAT-TT--G-A--ATTACTCTTATTCCTTGGGC--AAA-----AAC---A-A-AGCAGAGAAG-ACT-TGG-G-TAGAAA-GACTTATTCAC-G--TA--TGTT--TTGTA--AA--GCCTGA-TAC--GATGGTtaataa
gi|6 : attttatttgacatcaagctccttatTTTT---------CTATTACAC-TG-TTCA---ATGATTT----CT-ATTGC--TGCCG---TTT-TG--AAA-AATG-----T-T-T------CT----ACG-CAA--C-AC--AAT-TT--G-A--ATTACTCTTATCCCTTTAACA-AAA-----AGG---A---------GTAG-ACT-T-TGG-TAGAAA-GACTTAATCACAG--TA--TGTA--TTCTATACC--TCCTGA-GAT--AATGGTATAgcaa
gi|7 : tattgtgaactcatttacataatatgtagtatactgtgtagttagatcatgtatacttgtatgtacgtttttagttattttttaagttttttttatttacagtggacagtgttatgctatTTTT---------CTATTACACCTG-TTCA---ATGATTT----CT-ATTGC--TGCCG---TTT-GA--A-A-AATG-----T-T-T------CT----ACG-CAA--C-AC--A-T-TT--G-A--ATTACTCT-ATC-CTTTAACA-AAA-----AGG---A---------GTAG-ACT-T-T-GGTAGAAA-GACTTAATCAC-G--TA--TGTA--TTCTAT-AC---TCTGA-GAT--AATGGTATA
gi|15 : aagtattgtgaactcatttacatatatgtgtatacgtgtagttagatcatgtatacttgtatgtacgtttttagtttttttttaagttttttttattacgtggacagtgttagctatA---GTG--TT----TTTATTAT--TCGCA---TTT-TA--ATA-AATG-----C-T-C------AT----A-AACAA--C-AC--AAT-TT--G-A--ATTACTTTTATTTCTTGGGCA-AAA-----AAC---A-A-AACAGAGTAG-ACT-T-TGG-TAGAAA-GACTTAATCAC-GTCTG--TGTG--TTGTATA----GCCTGA-GAC--GATGGTAT
gi|16 : --TT----TT-GTT----TGGCA---TTT-GA--ATA-AATG-----C-T-C------ATTTACA-A-CAAC-C-AC--A----T--G-AACATTA-TGTTATATCT--GGCA-AAA-----AAC---A-G-AGCAGAGTAG-ACT-
gi|14 : tttggtaa----TT-ATTATGTTGGCAGATCCT-CA--ATG-A-TA-----CGT-C------GT----C-A-CAC--C-ACGAAAT-TTCGA-A--ATTACTCTTATTCCTTGCGCA-AAAGAAAAAAC---A-A-catggattgagagtgatgtttatatacaagaaaagcaagaacgatggtata
gi|19 : taggtgtatgtacgtttggagtttttttttaaataatatggagcatatgaatgtagattaattattctccagttattatcagT--TGGCA---TTT-TA--ATA-AATG-----C-T-C------ATA---A-A-CAA--C-GC--AAT-TT--G-A--ATT
gi|17 : -AAA-----AACCGCA-A-AGCAGAGTAG-ACT-T-T-G-GAAAAACGACTTAATCACAGTATG--TGTT--TTATACA----GCCAAA-GAT--GAAGG
gi|18 : AA-----AAT---A-A-AACAGAGTAT-ACT-T-TTG-TAGAAA-GACTGAATCAC-A---A--TATG--TTTTAT-ACA-GCCTGA-GAC--GATGGTATAga
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): GTTGTATGTGCTTTAAATTTACTTTATTTGTCTTTTTAAATGCCACCTAGCGACAGTTGTTCCCTATTACACGTTCTATTCGTTGGCATTTGATATAATTTGCTCTTTTAATTCCCTCCTTTTAGCAATCCGAACATACAGCAGAGAAGGACCTTTGGTAGAAAAACTTTCATCAACAGTATGTTCATTCTTATATCTGTCTGATATTCTTG
Alignments
lowQualScore : 333333 11 3333333333333333333333333333 111111 111 111111111 111 2222222222222222
lowQualScore : 1 5 77 5 000000 1 00 5 2 7777777777777777777777777777 1 5 66 222222 66 1 000 2 1 4 4 99 3 7 3 8 55 3 2 3 55555 3 5 3 4 111111111 2 2 2 222 2 444 33 55 444 4 55 2 2 2 55555 2 4444444444444444 8888 33 1 2 55 2 33 0 22 2 4444 333 2 2 2 33 2 2 0 2 2 2 7777 33 33 2 444 33 2 33
lowQualScore : . . .. . ...... . .. . . ............................ . . .. ...... .. . ... . . . . .. . . . . .. . . . ..... . . . . ......... . . . ... . ... .. .. ... . .. . . . ..... . ................ .... .. . . .. . .. . .. . .... ... . . . .. . . . . . . .... .. .. . ... .. . ..
lowQualScore : 7 0 99 7 777777 4 66 0 5 4444444444444444444444444444 0 0 99 888888 55 9 222 4 1 0 0 55 6 3 6 1 00 6 3 6 11111 6 8 3 6 444444444 9 5 5 888 5 444 44 66 111 7 66 4 4 4 99999 4 4444444444444444 2222 22 1 4 66 4 22 1 66 4 7777 999 2 2 4 22 4 4 3 4 4 5 9999 44 44 5 777 77 7 77
consensus : NGTATATTTTTCCATTATAT--G-AGT------TGTAGTTAGGCCATGTAT-ACTGGTAGTTGT-----------ATGT--------G---CTTTTTGAGTTAT-TTT--T---T--ACATAGGACAGTTGTATGTATGTTATTTTCCTATTACA-CTGTTC-AG--TGA-TTT-TAT-TNTT--GGCATTTT-AATA-AATG-C-T-C-ATAAACAACA-CAATTTC---------CTATTACAC-TG-TTCAGT-G--ATT-T---TTATT-AT--TGGCA---TTT-TA--ATA-A-AT-G-----CT-C------AT----A-A-CAA--C-AC--AAT-TT--G-AA--TTACTCTTATTTCTTGGGCA-A----AAAAC---A-A-AGCAGAGTAG-A--CT-T-TGG-TAGAAA-GACTTAATCA-C-GTCTG--TGTG--T-TGTA---TA--GCCTGA-GAC--GATGGTATA
Reference ( family-3485 ) : NGTATATTTTTCCATTATAT--G-AGT------TGTAGTTAGGCCATGTAT-ACTGGTAGTTGT-----------ACGT--------G---CTTTTTGAGTTNT-TTT--T---T--ACATAGGACAGTTGTATGTATGTTATTTTCCTATTACA-CTGTTC-AG--TGA-TTT-TAT-TNTT--GGCATTTT-AATA-AATG-C-T-C-ATAAACAACA-CAATTTC---------CTATTACAC-TG-TTCAGT-G--ATT-T---TTATT-AT--TGGCA---TTT-TA--ATA-A-AT-G-----CT-C------AT----A-A-CAA--C-AC--AAT-TT--G-AA--TTACTCTTATTTCTTGGGCA-A----AAAAC---A-A-AGCAGAGTAG-A--CT-T-TGG-TAGAAA-GACTTAATCA-C-GTCTG--TGTG--T-TGTA---TA--GCCTGA-GAC--GATGGTATA
gi|1 : GTATATTTTTCCATTATAT--G-AGG------TGTAGTTAGGCAATGTAT-ACTGGTAGTTGTTTGTTAGTTGTATGT--------G---CTTTTTGAGTTAT-TTT--T---TTTACATAGGACAGTT--------------TTCCTATTACA-CTGTTC-AG--TGA-TTT-TAT-TATT--GGCATTTT-AATA-AATG-C-G-C-ATAAACAACA-CAATTTC---------CTATTACAC-TG-TTCAGT-G---TT-T---TTATT-AT--TGGCA---TTT-TATTATA-A-AT-G-----CT-C------AT----A-AGCAA--C-AC--AAT-TT--G-AA--TTACTTTTATTTCTTGGGCA-A----AAAAC---A-A-AGCAGAGTAG-A--CT-T-TGG-TAGACA-TACTTAATCA-C-GTCTG--TGTG--T-TGTA---TA--GCCTGA-GAC--GATGGTATA
gi|10 : TTGCA-CTG----AGAATAA-TTA-TATATATT----CATGTC-AA----ATA-------ATAAACAATA----TTTCTCTCTCATTCCATTACAT-TG-TTCAGT-G--ATT-T---CTGTT-GT--TGACA---TTT-TA--A---A-AT-G-----CG-T------A-----A-A-CAAAAC-AC--AAT-CT--G-AA--TTATTCCTTCTCCTTGAGCC-A----AAACC---A-A-AGTAGAGTAG-A--CTGT-TGG-TAGAAATTACTTAATCA-CAGTATG--TGCT--T-CGTATTCTT--GCCTGA-GAG--GATGGTATa
gi|11 : TAAATAAGA-CAAT--A---------CTGCTACA--TG-TATATTTG--TTT-T---TTATT-ACA-TTGCA---TTCGTA--ATATA-AT-TTCTTTCT-C------AT----T---CAA----A---GAT-TT--------TTGCTATTATATAT--GGCA-A----ACAAC---A-G-AGCAGAGTAG-A--CT-A-TGG-TAGAAA-GACTT
gi|12 : ttagggtgaattttaagaaatgctgttatgtattgtatgtactttttggttgttctctcttccttgacaggagtaacatatatttA-CTT-TAT-T--T--GTC-TTTT---TA-AATG-C-CAC-CTAG-CGACAGTTGTTCC---------CTATTACAC--G-TTC----------------TATTCGT--TGGCA---TTT-GAT-ATA-A-TTTG-----CT-C-----------------------------T-TT--T-AA--TT-CCCTCCTTTT---AGCA-ATCCGAACAT---A-C-AGCAGAGAAG-GACCT-T-TGG-TAGAAA-AACTT--TCATC-AACAG--TATG--T-T
gi|13 : gttgtatgtgctttaaatttTTTC---------CTATTACTC-TG-TTCAGC-G--ATT-T---CTATT-AT--TGGCA----TT-TA--TTA-A-AT-G-----TT-C------ATA---A-A-CAA--C-AC--AAT-TT--G-AA--TTACTCTTATTCCTTGGGC--A----AAAAC---A-A-AGCAGAGAAG-A--CT-T-GGG-TAGAAA-GACTTATTCA-C-G--TA--TGTT--T-TGTA---AA--GCCTGA-TAC--GATGGTcattcttatatctgtctgatattcttg
gi|14 : attttatttgacatcaagctccttat-TCCAGT-T--ATTATCAGTTATT-ATGTTGGCAGATCCT-CA--ATG-ATAC-G------T-C------GT----C-A-CAC--C-ACGAAAT-TTCGA-AA--TTACTCTTATTCCTTGCGCA-A----AAGAA---A-A-AACAgcaa
gi|15 : taggtgtatgtacgtttggagtttttttttaaataatatggagcatatgaatgtagattaattattcAGT-G---TT-T---TTATT-AT--TCGCA---TTT-TA--ATA-A-AT-G-----CT-C------AT----A-AACAA--C-AC--AAT-TT--G-AA--TTACTTTTATTTCTTGGGCA-A----AAAAC---A-A-AACAGAGTAG-A--CT-T-TGG-TAGAAA-GACTTAATCA-C-GTCTG--TGTG--T-TGTA---TA--GCCTGA-GAC--GATGGTATa
gi|16 : -TTTGGT-A--ATT-T---T-GTT-----TGGCA---TTT-GA--ATA-A-AT-G-----CT-C------ATTTACA-A-CAA--CCAC--A----T--G-AACATTA-TGTTATATCT--GGCA-A----AAAAC---A-G-AGCAGAGTAG-A--CT-CATGGATTGAGA-G---TGAT-----GTTTA--TATA--CAAGAA---AA--GCAAGA--AC--GATGGTATA
gi|17 : -A----AAAACCGCA-A-AGCAGAGTAG-A--CT-T-TGG-AAAAAC-GACTTAATCA-CAGTATG--TGTT--T-TATA---CA--GCCAAA-GAT--GAAGG
gi|18 : ----AAAAT---A-A-AACAGAGTAT-A--CT-T-TTG-TAGAAA-GACTGAATCA-C-A-ATA--TGTT--T-TATA---CA--GCCTGA-GAC--GATGGTATAga
gi|19 : T--TGGCA---TTT-TA--ATA-A-AT-G-----CT-C------ATA---A-A-CAA--C-GC--AAT-TT--G-AA--TT
gi|2 : GTATATTTTTCCATTATAT--G-AGT------TGTAGTTAGGCCATGTAT-ACTGGTAGTTGT-----------ATGT--------G---CTTTTTGAGTTAT-TTT--T---T--ACATAGGACAGTTGTATGTATGTTATTTTCCTATTACA-CTGTTC-AG--TGA-TTT-TAT-TTTT--GGCATTTT-AATA-AATG-C-T-C-ATAAACAACA-CAATTTC---------CTATTACAC-TG-TTCAGT-G----T-T---TTATT-AT--TGGCA---TTT-TA--ATA-A-AT-G-----CT-C------AT----A-A-CAA--C-AC--AAT-TT--G-AA--TTGCTTTTATTTCTTGGGCA-A----AAAAC---A-A-AGCAG-GTAG-A--CT-T-T-G-TAGAAA-GACTTAATCA-C-GTCTG--TGTG--T-TGTA---TGACGCCTGA-GAC--GATGGTATA
gi|3 : aTATATTTT-CCATTATATTGA-AGT------TGTAG-TAGG-CATGTAT-ACTGGTAGTTGT-----------ATGT--------G---CTTTTTGAGTTTT-TTT--T---T--GCATCGGAC-GTTGTATGTATG-TATTTTCCTAATTCA-CTGTTCAAG--TGA-TTT-TAT-TTTT--GGCATTTTAAATA-A--G-C-T-C-ATAA--AACA-CATTTTC---------CTATT-CAC-TGTTTCAGT-----TT-T---TTATT-AT--TGGCA----AT-TA--ATA-C-AT-G-----CT-CCATTAAAT------A-CAA----AC--AAT-TT--GAAA--TTGTTTTTATTTCT--GGCACA----AAAAC---A-AGAGCAGAGTAGAA--CT-T-TGG-TAG-AA-GACTTAAT-A-C-GTCTGTTTGTGGTT-TGTA---TA--G-CTGA-GAC--GATGGTATA
gi|4 : TATTTTTCCATTAT----G-AGT------TGTAGTTAG-CCATGTAT-ACTGGTAGTTGT-----------ATG---------G---CTTTTTGAGTTAT-TTT--T---T--ACA--AGACAGTTGTAT-TATGTTATTTCC--ATTACA-CTTTTC-AG---GA-TTT-TAT-TTTT--TGCATTTT-AATACAATG-C-T-CGATAAACAACA-CAATTTC---------CTAT-ACAC-TG-TTCGGT-G---TT-T---TTATT-AT--TGGCA---TTTGTA--ATA-A-AT-G-----CT-C------AC----A-AACAA--C-AC--AAT-TTT-G-AA--TTGCTTTTATTTTTTGG-CA-A----AAAAC---ACA-AGCCGAGTAG-A--CT-T-T-G-TAAAAG-GACTTAATCA-C-GTCTG--TGTG--T-T-TA---TA--GCCTGATGAC--A--GGTATAa
gi|5 : TATATTTTTCCATTAT-T--G-AGT------TG------------GTATTACTGGTAGTTGT-----------ATGT--------G----TTTTTGAGTTAT-TTT--T------ACATAGGACAGT-GTATGT-TGT-ATTTTC-TATTACA-CTGTTC-AGC-TGA-TTT-TAT-TTTTTTGGCATTTT-AATA-AATGAC-T-C-ATAT-CAACA-CA-TTTC---------CTATTACAC-TG-ATCAGT-GTTCTT-T---TTATT-AT--TGGCA---TT---A--ATA-A-AT-G-----C--C------AT----A-AACAA--CGAC--A-T-TT--G-AA--TTGCTTTTATT-CTTGG-CA-A----AA-AC---A-A-AGCAGAGTAG-A--CT-T-TGG-TAGAAA-GACTTAATCA-A-CTCTG--TGTG--T-TG-----TA--G-CTGA-GACGTGATGG
gi|6 : TTTACATAATAT--GTAGTATACTGTGTAGTTAGATCATGTAT-ACTTGTA--TGT-----------ACGTTTTTAGTTA---TTTTTTAAGTTTT-TTT--TATTT--ACAGTGGACAGT-GT---TATGCTATTTTTCTATTACA-CTGTTC-AA--TGA-TTTCTAT-TGCT--GCCGTTTT-GAAA-AATG-T-T-T-CTACGCAACA-CAATTT
gi|6 : tattgtgaactcaTTTT---------CTATTACAC-TG-TTCAAT-G--ATT-T---CTATT-GC--TGCCG---TTT-TG--AAA-A-AT-G-----TT-T------CT----ACG-CAA--C-AC--AAT-TT--G-AA--TTACTCTTATCCCTTTAACA-A----AAAG------------GAGTAG-A--CT-T-TGG-TAGAAA-GACTTAATCA-CAGTATG--TATT--C-TATA---CC--TCCTGA-GAT--AATGGTATAgaattactcttatccctttaacaaaaaggagtagactttggtagaaagacttaatcacagtatgtattctatacctcctgagataatggtata
gi|7 : tattgtgaactcatttacataatatgtagtatactgtgtagttagatcatgtatacttgtatgtacgtttttagttattttttaagttttttttatttacagtggacagtgttatgctatTTTACAT-ATAT--G-TGTATACG-TGTAGTTAGATCATGTAT-ACTTGTA--TGT-----------ACGTTTTTA---GTTTTTTTTTAAGTTTT-TTTTAT---T--ACGT-GGACAG-TGT---TA-GCTATTTTTCTATTACACCTGTTC-AA--TGA-TTTCTAT-TGCT--GCCGTTTG-AA-A-AATG-T-T-T-CTACGCAACA-CA--TTT---------GAATTACTC-TA-TCC
gi|7 : aagtattgtgaactcaTTTT---------CTATTACACCTG-TTCAAT-G--ATT-T---CTATT-GC--TGCCG---TTT-GA--A-A-A-AT-G-----TT-T------CT----ACG-CAA--C-AC--A-T-TT--G-AA--TTACTCT-ATCCTTT-------------AAC---A-A-AAAGGAGTAG-A--CT-T-TGG-TAGAAA-GACTTAATCA-C-G--TA--TGTA--T-TCTA---TA--CTCTGA-GAT--AATGGTATAtttaacaaaaaggagtagactttggtagaaagacttaatcacgtatgtattctatactctgagataatggtata
gi|8 : aagtattgtgaactcatttacatatatgtgtatacgtgtagttagatcatgtatacttgtatgtacgtttttagtttttttttaagttttttttattacgtggacagtgttagctatTAT-ACTTGTAGTTGT-----------GTGT--------G---CTTTTTGAGTTATCTTT--T---T--ACATAGGACAGTTGTATGCATGTTATTTTCCTATTACA-CTGTTC-AG--TGATTTT-TAT-TATT--GGCATTTT-AATA-AATG-C-T-C-ATAAACAACA-CAATTT
gi|8 : taggatcactagttTTTC---------CTATTACAC-TG-TTCAGT-G--ATT-T---TTATT-AT--TGGCA---TTT-TA--ATA-A-AT-G-----CT-C------AT----A-AACAA--C-AC--AAT-TT--G-AA--TTACTCTTATTTCTTGGGCA-A----AAAAC---A-A-AGCAGAGTGG-A--CT-T-TGG-TAGAAA-GACTTAATCA-C-GTATG--TGTG--T-TGTA---TA--TCCTGA-GAC--GATGGTATgaattactcttatttcttgggcaaaaaacaaagcagagtggactttggtagaaagacttaatcacgtatgtgtgttgtatatcctgagacgatggtat
gi|9 : taggatcactagtttatacttgtagttgtgtgtgctttttgagttatctttttacataggacagttgtatgcatgttatATAGTTGTATTTATGTTATTTTCCTATTACA-CTGTC---G--TGA--TT-TAT-T-TT--GGCATTTT-AATA-AATG-CTT-C-ATAAACAA-A-CAAT
gi|9 : attaagatctcattaccttacacgtactaagtatacttgtatttcatttactcttactgaatgtTTTC---------CTATTACAC-TG-TC--GT-G--ATT-T-----ATT--T--TGGCA---TTT-TA--ATA-A-AT-G-----CTTC------AT----A-AACAA----AC--AATATT--G-AA--TTGCTTTTATTTCTTGGGCA-A----AA--C---A-A-AGCAGAGTAG-A--CT-T-T---TAGAAA-GA-TTAATTA-C-GT-TG--TGTG--T-TGTA---TA--GCCTGA-GAC--GATGGTattgaattgcttttatttcttgggcaaaacaaagcagagtagacttttagaaagattaattacgttgtgtgttgtatagcctgagacgatggttaataa
Alignments
lowQualScore : 333333 11 22222222222 3333333333333 111111 111 111111111 111 2222222222222222
lowQualScore : 1 5 77 5 000000 1 00 5 2 33333333333 1111111111111 0 5 66 222222 66 1 000 2 1 4 4 99 3 7 3 8 55 3 2 3 55555 3 5 3 4 111111111 2 2 2 222 2 444 33 55 444 4 55 2 2 2 55555 2 4444444444444444 8888 33 1 2 55 2 33 0 22 2 4444 333 2 2 2 33 2 2 0 2 2 2 7777 33 33 2 444 33 2 33
lowQualScore : . . .. . ...... . .. . . ........... ............. . . .. ...... .. . ... . . . . .. . . . . .. . . . ..... . . . . ......... . . . ... . ... .. .. ... . .. . . . ..... . ................ .... .. . . .. . .. . .. . .... ... . . . .. . . . . . . .... .. .. . ... .. . ..
lowQualScore : 7 0 99 7 777777 4 66 0 5 88888888888 6666666666666 8 0 99 888888 55 9 222 4 1 0 0 55 6 3 6 1 00 6 3 6 11111 6 8 3 6 444444444 9 5 5 888 5 444 44 66 111 7 66 4 4 4 99999 4 4444444444444444 2222 22 1 4 66 4 22 1 66 4 7777 999 2 2 4 22 4 4 3 4 4 5 9999 44 44 5 777 77 7 77
consensus : NGTATATTTTTCCATTATAT--G-AGT------TGTAGTTAGGCCATGTAT-ACTGGTAGTTGT-----------ATGT--------G---CTTTTTGAGTTAT-TTT--T---T--ACATAGGACAGTTGTATGTATGTTATTTTCCTATTACA-CTGTTC-AG--TGA-TTT-TAT-TNTT--GGCATTTT-AATA-AATG-C-T-C-ATAAACAACA-CAATTTC---------CTATTACAC-TG-TTCAGT-G--ATT-T---TTATT-AT--TGGCA---TTT-TA--ATA-A-AT-G-----CT-C------AT----A-A-CAA--C-AC--AAT-TT--G-AA--TTACTCTTATTTCTTGGGCA-A----AAAAC---A-A-AGCAGAGTAG-A--CT-T-TGG-TAGAAA-GACTTAATCA-C-GTCTG--TGTG--T-TGTA---TA--GCCTGA-GAC--GATGGTATA
Reference ( family-3485 ) : NGTATATTTTTCCATTATAT--G-AGT------TGTAGTTAGGCCATGTAT-ACTGGTAGTTGT-----------ATGT--------G---CTTTTTGAGTTAT-TTT--T---T--ACATAGGACAGTTGTATGTATGTTATTTTCCTATTACA-CTGTTC-AG--TGA-TTT-TAT-TNTT--GGCATTTT-AATA-AATG-C-T-C-ATAAACAACA-CAATTTC---------CTATTACAC-TG-TTCAGT-G--ATT-T---TTATT-AT--TGGCA---TTT-TA--ATA-A-AT-G-----CT-C------AT----A-A-CAA--C-AC--AAT-TT--G-AA--TTACTCTTATTTCTTGGGCA-A----AAAAC---A-A-AGCAGAGTAG-A--CT-T-TGG-TAGAAA-GACTTAATCA-C-GTCTG--TGTG--T-TGTA---TA--GCCTGA-GAC--GATGGTATA
gi|1 : GTATATTTTTCCATTATAT--G-AGG------TGTAGTTAGGCAATGTAT-ACTGGTAGTTGTTTGTTAGTTGTATGT--------G---CTTTTTGAGTTAT-TTT--T---TTTACATAGGACAGTT--------------TTCCTATTACA-CTGTTC-AG--TGA-TTT-TAT-TATT--GGCATTTT-AATA-AATG-C-G-C-ATAAACAACA-CAATTTC---------CTATTACAC-TG-TTCAGT-G---TT-T---TTATT-AT--TGGCA---TTT-TATTATA-A-AT-G-----CT-C------AT----A-AGCAA--C-AC--AAT-TT--G-AA--TTACTTTTATTTCTTGGGCA-A----AAAAC---A-A-AGCAGAGTAG-A--CT-T-TGG-TAGACA-TACTTAATCA-C-GTCTG--TGTG--T-TGTA---TA--GCCTGA-GAC--GATGGTATA
gi|10 : TTGCA-CTG----AGAATAA-TTA-TATATATT----CATGTC-AA----ATA-------ATAAACAATA----TTTCTCTCTCATTCCATTACAT-TG-TTCAGT-G--ATT-T---CTGTT-GT--TGACA---TTT-TA--A---A-AT-G-----CG-T------A-----A-A-CAAAAC-AC--AAT-CT--G-AA--TTATTCCTTCTCCTTGAGCC-A----AAACC---A-A-AGTAGAGTAG-A--CTGT-TGG-TAGAAATTACTTAATCA-CAGTATG--TGCT--T-CGTATTCTT--GCCTGA-GAG--GATGGTATa
gi|11 : TAAATAAGA-CAAT--A---------CTGCTACA--TG-TATATTTG--TTT-T---TTATT-ACA-TTGCA---TTCGTA--ATATA-AT-TTCTTTCT-C------AT----T---CAA----A---GAT-TT--------TTGCTATTATATAT--GGCA-A----ACAAC---A-G-AGCAGAGTAG-A--CT-A-TGG-TAGAAA-GACTT
gi|12 : ttagggtgaattttaagaaatgctgttatgtattgtatgtactttttggttgttctctcttccttgacaggagtaacatatatttA-CTT-TAT-T--T--GTC-TTTT---TA-AATG-C-CAC-CTAG-CGACAGTTGTTCC---------CTATTACAC--G-TTC----------------TATTCGT--TGGCA---TTT-GAT-ATA-A-TTTG-----CT-C-----------------------------T-TT--T-AA--TT-CCCTCCTTTT---AGCA-ATCCGAACAT---A-C-AGCAGAGAAG-GACCT-T-TGG-TAGAAA-AACTT--TCATC-AACAG--TATG--T-T
gi|13 : gttgtatgtgctttaaatttTTTC---------CTATTACTC-TG-TTCAGC-G--ATT-T---CTATT-AT--TGGCA----TT-TA--TTA-A-AT-G-----TT-C------ATA---A-A-CAA--C-AC--AAT-TT--G-AA--TTACTCTTATTCCTTGGGC--A----AAAAC---A-A-AGCAGAGAAG-A--CT-T-GGG-TAGAAA-GACTTATTCA-C-G--TA--TGTT--T-TGTA---AA--GCCTGA-TAC--GATGGTcattcttatatctgtctgatattcttg
gi|14 : attttatttgacatcaagctccttat-TCCAGT-T--ATTATCAGTTATT-ATGTTGGCAGATCCT-CA--ATG-ATAC-G------T-C------GT----C-A-CAC--C-ACGAAAT-TTCGA-AA--TTACTCTTATTCCTTGCGCA-A----AAGAA---A-A-AACAgcaa
gi|15 : taggtgtatgtacgtttggagtttttttttaaataatatggagcatatgaatgtagattaattattcAGT-G---TT-T---TTATT-AT--TCGCA---TTT-TA--ATA-A-AT-G-----CT-C------AT----A-AACAA--C-AC--AAT-TT--G-AA--TTACTTTTATTTCTTGGGCA-A----AAAAC---A-A-AACAGAGTAG-A--CT-T-TGG-TAGAAA-GACTTAATCA-C-GTCTG--TGTG--T-TGTA---TA--GCCTGA-GAC--GATGGTATa
gi|16 : -TTTGGT-A--ATT-T---T-GTT-----TGGCA---TTT-GA--ATA-A-AT-G-----CT-C------ATTTACA-A-CAA--CCAC--A----T--G-AACATTA-TGTTATATCT--GGCA-A----AAAAC---A-G-AGCAGAGTAG-A--CT-CATGGATTGAGA-G---TGAT-----GTTTA--TATA--CAAGAA---AA--GCAAGA--AC--GATGGTATA
gi|17 : -A----AAAACCGCA-A-AGCAGAGTAG-A--CT-T-TGG-AAAAAC-GACTTAATCA-CAGTATG--TGTT--T-TATA---CA--GCCAAA-GAT--GAAGG
gi|18 : ----AAAAT---A-A-AACAGAGTAT-A--CT-T-TTG-TAGAAA-GACTGAATCA-C-A-ATA--TGTT--T-TATA---CA--GCCTGA-GAC--GATGGTATAga
gi|19 : T--TGGCA---TTT-TA--ATA-A-AT-G-----CT-C------ATA---A-A-CAA--C-GC--AAT-TT--G-AA--TT
gi|2 : GTATATTTTTCCATTATAT--G-AGT------TGTAGTTAGGCCATGTAT-ACTGGTAGTTGT-----------ATGT--------G---CTTTTTGAGTTAT-TTT--T---T--ACATAGGACAGTTGTATGTATGTTATTTTCCTATTACA-CTGTTC-AG--TGA-TTT-TAT-TTTT--GGCATTTT-AATA-AATG-C-T-C-ATAAACAACA-CAATTTC---------CTATTACAC-TG-TTCAGT-G----T-T---TTATT-AT--TGGCA---TTT-TA--ATA-A-AT-G-----CT-C------AT----A-A-CAA--C-AC--AAT-TT--G-AA--TTGCTTTTATTTCTTGGGCA-A----AAAAC---A-A-AGCAG-GTAG-A--CT-T-T-G-TAGAAA-GACTTAATCA-C-GTCTG--TGTG--T-TGTA---TGACGCCTGA-GAC--GATGGTATA
gi|3 : aTATATTTT-CCATTATATTGA-AGT------TGTAG-TAGG-CATGTAT-ACTGGTAGTTGT-----------ATGT--------G---CTTTTTGAGTTTT-TTT--T---T--GCATCGGAC-GTTGTATGTATG-TATTTTCCTAATTCA-CTGTTCAAG--TGA-TTT-TAT-TTTT--GGCATTTTAAATA-A--G-C-T-C-ATAA--AACA-CATTTTC---------CTATT-CAC-TGTTTCAGT-----TT-T---TTATT-AT--TGGCA----AT-TA--ATA-C-AT-G-----CT-CCATTAAAT------A-CAA----AC--AAT-TT--GAAA--TTGTTTTTATTTCT--GGCACA----AAAAC---A-AGAGCAGAGTAGAA--CT-T-TGG-TAG-AA-GACTTAAT-A-C-GTCTGTTTGTGGTT-TGTA---TA--G-CTGA-GAC--GATGGTATA
gi|4 : TATTTTTCCATTAT----G-AGT------TGTAGTTAG-CCATGTAT-ACTGGTAGTTGT-----------ATG---------G---CTTTTTGAGTTAT-TTT--T---T--ACA--AGACAGTTGTAT-TATGTTATTTCC--ATTACA-CTTTTC-AG---GA-TTT-TAT-TTTT--TGCATTTT-AATACAATG-C-T-CGATAAACAACA-CAATTTC---------CTAT-ACAC-TG-TTCGGT-G---TT-T---TTATT-AT--TGGCA---TTTGTA--ATA-A-AT-G-----CT-C------AC----A-AACAA--C-AC--AAT-TTT-G-AA--TTGCTTTTATTTTTTGG-CA-A----AAAAC---ACA-AGCCGAGTAG-A--CT-T-T-G-TAAAAG-GACTTAATCA-C-GTCTG--TGTG--T-T-TA---TA--GCCTGATGAC--A--GGTATAa
gi|5 : TATATTTTTCCATTAT-T--G-AGT------TG------------GTATTACTGGTAGTTGT-----------ATGT--------G----TTTTTGAGTTAT-TTT--T------ACATAGGACAGT-GTATGT-TGT-ATTTTC-TATTACA-CTGTTC-AGC-TGA-TTT-TAT-TTTTTTGGCATTTT-AATA-AATGAC-T-C-ATAT-CAACA-CA-TTTC---------CTATTACAC-TG-ATCAGT-GTTCTT-T---TTATT-AT--TGGCA---TT---A--ATA-A-AT-G-----C--C------AT----A-AACAA--CGAC--A-T-TT--G-AA--TTGCTTTTATT-CTTGG-CA-A----AA-AC---A-A-AGCAGAGTAG-A--CT-T-TGG-TAGAAA-GACTTAATCA-A-CTCTG--TGTG--T-TG-----TA--G-CTGA-GACGTGATGG
gi|6 : TTTACATAATAT--GTAGTATACTGTGTAGTTAGATCATGTAT-ACTTGTA--TGT-----------ACGTTTTTAGTTA---TTTTTTAAGTTTT-TTT--TATTT--ACAGTGGACAGT-GT---TATGCTATTTTTCTATTACA-CTGTTC-AA--TGA-TTTCTAT-TGCT--GCCGTTTT-GAAA-AATG-T-T-T-CTACGCAACA-CAATTT
gi|6 : tattgtgaactcaTTTT---------CTATTACAC-TG-TTCAAT-G--ATT-T---CTATT-GC--TGCCG---TTT-TG--AAA-A-AT-G-----TT-T------CT----ACG-CAA--C-AC--AAT-TT--G-AA--TTACTCTTATCCCTTTAACA-A----AAAG------------GAGTAG-A--CT-T-TGG-TAGAAA-GACTTAATCA-CAGTATG--TATT--C-TATA---CC--TCCTGA-GAT--AATGGTATAgaattactcttatccctttaacaaaaaggagtagactttggtagaaagacttaatcacagtatgtattctatacctcctgagataatggtata
gi|7 : tattgtgaactcatttacataatatgtagtatactgtgtagttagatcatgtatacttgtatgtacgtttttagttattttttaagttttttttatttacagtggacagtgttatgctatTTTACAT-ATAT--G-TGTATACG-TGTAGTTAGATCATGTAT-ACTTGTA--TGT-----------ACGTTTTTA---GTTTTTTTTTAAGTTTT-TTTTAT---T--ACGT-GGACAG-TGT---TA-GCTATTTTTCTATTACACCTGTTC-AA--TGA-TTTCTAT-TGCT--GCCGTTTG-AA-A-AATG-T-T-T-CTACGCAACA-CA--TTT---------GAATTACTC-TA-TCC
gi|7 : aagtattgtgaactcaTTTT---------CTATTACACCTG-TTCAAT-G--ATT-T---CTATT-GC--TGCCG---TTT-GA--A-A-A-AT-G-----TT-T------CT----ACG-CAA--C-AC--A-T-TT--G-AA--TTACTCT-ATCCTTT-------------AAC---A-A-AAAGGAGTAG-A--CT-T-TGG-TAGAAA-GACTTAATCA-C-G--TA--TGTA--T-TCTA---TA--CTCTGA-GAT--AATGGTATAtttaacaaaaaggagtagactttggtagaaagacttaatcacgtatgtattctatactctgagataatggtata
gi|8 : aagtattgtgaactcatttacatatatgtgtatacgtgtagttagatcatgtatacttgtatgtacgtttttagtttttttttaagttttttttattacgtggacagtgttagctatTAT-ACTTGTAGTTGT-----------GTGT--------G---CTTTTTGAGTTATCTTT--T---T--ACATAGGACAGTTGTATGCATGTTATTTTCCTATTACA-CTGTTC-AG--TGATTTT-TAT-TATT--GGCATTTT-AATA-AATG-C-T-C-ATAAACAACA-CAATTT
gi|8 : taggatcactagttTTTC---------CTATTACAC-TG-TTCAGT-G--ATT-T---TTATT-AT--TGGCA---TTT-TA--ATA-A-AT-G-----CT-C------AT----A-AACAA--C-AC--AAT-TT--G-AA--TTACTCTTATTTCTTGGGCA-A----AAAAC---A-A-AGCAGAGTGG-A--CT-T-TGG-TAGAAA-GACTTAATCA-C-GTATG--TGTG--T-TGTA---TA--TCCTGA-GAC--GATGGTATgaattactcttatttcttgggcaaaaaacaaagcagagtggactttggtagaaagacttaatcacgtatgtgtgttgtatatcctgagacgatggtat
gi|9 : taggatcactagtttatacttgtagttgtgtgtgctttttgagttatctttttacataggacagttgtatgcatgttatATAGTTGTATTTATGTTATTTTCCTATTACA-CTGTC---G--TGA--TT-TAT-T-TT--GGCATTTT-AATA-AATG-CTT-C-ATAAACAA-A-CAAT
gi|9 : attaagatctcattaccttacacgtactaagtatacttgtatttcatttactcttactgaatgtTTTC---------CTATTACAC-TG-TC--GT-G--ATT-T-----ATT--T--TGGCA---TTT-TA--ATA-A-AT-G-----CTTC------AT----A-AACAA----AC--AATATT--G-AA--TTGCTTTTATTTCTTGGGCA-A----AA--C---A-A-AGCAGAGTAG-A--CT-T-T---TAGAAA-GA-TTAATTA-C-GT-TG--TGTG--T-TGTA---TA--GCCTGA-GAC--GATGGTattgaattgcttttatttcttgggcaaaacaaagcagagtagacttttagaaagattaattacgttgtgtgttgtatagcctgagacgatggttaataa
blockSeqs : T A TG T ATACTG T GC T G . TTTTAGTTAT C TA ATTT TA T ATG T C C A AA T C A A TT A T C CCA G A G A TCTCTCATT C T T TTC A CAG CG GT GAT G T T T T TCTTT T CATTAAATA AAC GA A A CG A CA TG C TCCG CGC C G A AC G A A T T AGTA TT GT A TTC AC T GT
blockSeqs : T A . . ATACG T AT . G . TTTTAGTTTT . . T TC T ATG T C . . C . C . T . . T . ACT . A . G . . . . A . . G A . G . . . . . . ATTTACAA CC . A . T . . TG . . . . . . . . . . . . AGTA . . . . . . .
blockSeqs : T A . . . T AT . G . GC . . T TA T ATG T C . . . . . . T . . T . CTT . A . A . . . . T . . A . . . . . . . . . ATAAA CG . A . . . . TG . . . . . . . . . . . . AGTA . . . . . . .
blockSeqs : T A . . . T G . G . GC . . T GT T ATG C C . . . . . . T . . T . CT . A . T . . . . A . . A . . . . . . . . . ATAAA C . A . . . . TG . . . . . . . . . . . . AAC . . . . . . .
blockSeqs : A . . . . . C . G . GC . . T TA T ATT C C . . . . . . T . . T . CT . G . A . . . . A . . A . . . . . . . . . ATAAA C . A . . . . TG . . . . . . . . . . . . GTC . . . . . . .
blockSeqs : . . . . . . . . . . GC . . T T T AT T C . . . . . . G . . A . CT . G . A . . . . A . . A . . . . . . . . . ACAAA C . A . . . . TG . . . . . . . . . . . . GTT . . . . . . .
blockSeqs : . . . G . . . . . . T . . . . . . . G . . T . TT . A . A . . . . A . . A . . . . . . . . . ATAAA C . A . . . . TG . . . . . . . . . . . . GTC . . . . . . .
blockSeqs : . . . . . . . . . . A . . T . TT . A . A . . . . A . . A . . . . . . . . . CTACG C . A . . . . TT . . . . . . . . . . . . GTC . . . . . . .
blockSeqs : . . . . . . . . . . . CT . . . . . . . . A . . A . . . . . . . . . CTACG C . A . . . . TG . . . . . . . . . . . . GTC . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . A . . A . . . . . . . . . ATAAA C . A . . . . TG . . . . . . . . . . . . CTC . . . . . . .
blockSeqs : . . . . . . . . . . G . . . . . . . . . ATAAA C . A . . . . T . . . . . . . . . . . . GTA . . . . . . .
blockSeqs : . . . . . . . G . . . . . . . . . GTCA C . A . . . . . . . . . . . . . . . . . AA . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . . . ATAA . . . . . . . . . . . . . . . . . . . . GT . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . AAA . . . . . . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . ATT . . . . . . . . . . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : *********** T***** ATG A** **
originalCons : NGTATATTTTTCCATTATAT--G-AGT------TGTAGTTAGGCCATGTAT-ACTGGTAGTTGT-----------ATGT--------G---CTTTTTGAGTTAT-TTT--T---T--ACATAGGACAGTTGTATGTATGTTATTTTCCTATTACA-CTGTTC-AG--TGA-TTT-TAT-TNTT--GGCATTTT-AATA-AATG-C-T-C-ATAAACAACA-CAATTTC---------CTATTACAC-TG-TTCAGT-G--ATT-T---TTATT-AT--TGGCA---TTT-TA--ATA-A-AT-G-----CT-C------AT----A-A-CAA--C-AC--AAT-TT--G-AA--TTACTCTTATTTCTTGGGCA-A----AAAAC---A-A-AGCAGAGTAG-A--CT-T-TGG-TAGAAA-GACTTAATCA-C-GTCTG--TGTG--T-TGTA---TA--GCCTGA-GAC--GATGGTATA
finalCons : NGTATATTTTTCCATTATAT--G-AGT------TGTAGTTAGGCCATGTAT-ACTGGTAGTTGT-----------ATGT--------G---CTTTTTGAGTTAT-TTT--TT-----ACATAGGACAGTTGTATGTATGTTATTTTCCTATTACA-CTGTTC-AG--TGA-TTT-TAT-TNTT--GGCATTTT-AATA-AATG-C-T-C-ATAAACAACA-CAATTTC---------CTATTACAC-TG-TTCAGT-GA--TT-T---TTATT-AT--TGGCA---TTT-TA--ATA-A-AT-G-----CT-C------AT----A-A-CAA--C-AC--AAT-TT--G-AA--TTACTCTTATTTCTTGGGCA-A----AAAAC---A-A-AGCAGAGTAG-A--CT-T-TGG-TAGAAA-GACTTAATCA-C-GTCTG--TGTG--T-TGTA---TA--GCCTGA-GAC--GATGGTATA
Alignments
lowQualScore : 333333 11 22222222222 3333333333333 111111 111 111111111 111 2222222222222222
lowQualScore : 1 5 77 5 000000 1 00 5 2 33333333333 1111111111111 0 5 66 222222 66 1 000 2 1 4 4 99 3 7 3 8 55 3 2 3 55555 3 5 3 4 111111111 2 2 2 222 2 444 33 55 444 4 55 2 2 2 55555 2 4444444444444444 8888 33 1 2 55 2 33 0 22 2 4444 333 2 2 2 33 2 2 0 2 2 2 7777 33 33 2 444 33 2 33
lowQualScore : . . .. . ...... . .. . . ........... ............. . . .. ...... .. . ... . . . . .. . . . . .. . . . ..... . . . . ......... . . . ... . ... .. .. ... . .. . . . ..... . ................ .... .. . . .. . .. . .. . .... ... . . . .. . . . . . . .... .. .. . ... .. . ..
lowQualScore : 7 0 99 7 777777 4 66 0 5 88888888888 6666666666666 8 0 99 888888 55 9 222 4 1 0 0 55 6 3 6 1 00 6 3 6 11111 6 8 3 6 444444444 9 5 5 888 5 444 44 66 111 7 66 4 4 4 99999 4 4444444444444444 2222 22 1 4 66 4 22 1 66 4 7777 999 2 2 4 22 4 4 3 4 4 5 9999 44 44 5 777 77 7 77
consensus : NGTATATTTTTCCATTATAT--G-AGT------TGTAGTTAGGCCATGTAT-ACTGGTAGTTGT-----------ATGT--------G---CTTTTTGAGTTAT-TTT--T---T--ACATAGGACAGTTGTATGTATGTTATTTTCCTATTACA-CTGTTC-AG--TGA-TTT-TAT-TNTT--GGCATTTT-AATA-AATG-C-T-C-ATAAACAACA-CAATTTC---------CTATTACAC-TG-TTCAGT-G--ATT-T---TTATT-AT--TGGCA---TTT-TA--ATA-A-AT-G-----CT-C------AT----A-A-CAA--C-AC--AAT-TT--G-AA--TTACTCTTATTTCTTGGGCA-A----AAAAC---A-A-AGCAGAGTAG-A--CT-T-TGG-TAGAAA-GACTTAATCA-C-GTCTG--TGTG--T-TGTA---TA--GCCTGA-GAC--GATGGTATA
Reference ( family-3485 ) : NGTATATTTTTCCATTATAT--G-AGT------TGTAGTTAGGCCATGTAT-ACTGGTAGTTGT-----------ATGT--------G---CTTTTTGAGTTAT-TTT--T---T--ACATAGGACAGTTGTATGTATGTTATTTTCCTATTACA-CTGTTC-AG--TGA-TTT-TAT-TNTT--GGCATTTT-AATA-AATG-C-T-C-ATAAACAACA-CAATTTC---------CTATTACAC-TG-TTCAGT-G--ATT-T---TTATT-AT--TGGCA---TTT-TA--ATA-A-AT-G-----CT-C------AT----A-A-CAA--C-AC--AAT-TT--G-AA--TTACTCTTATTTCTTGGGCA-A----AAAAC---A-A-AGCAGAGTAG-A--CT-T-TGG-TAGAAA-GACTTAATCA-C-GTCTG--TGTG--T-TGTA---TA--GCCTGA-GAC--GATGGTATA
gi|1 : GTATATTTTTCCATTATAT--G-AGG------TGTAGTTAGGCAATGTAT-ACTGGTAGTTGTTTGTTAGTTGTATGT--------G---CTTTTTGAGTTAT-TTT--T---TTTACATAGGACAGTT--------------TTCCTATTACA-CTGTTC-AG--TGA-TTT-TAT-TATT--GGCATTTT-AATA-AATG-C-G-C-ATAAACAACA-CAATTTC---------CTATTACAC-TG-TTCAGT-G---TT-T---TTATT-AT--TGGCA---TTT-TATTATA-A-AT-G-----CT-C------AT----A-AGCAA--C-AC--AAT-TT--G-AA--TTACTTTTATTTCTTGGGCA-A----AAAAC---A-A-AGCAGAGTAG-A--CT-T-TGG-TAGACA-TACTTAATCA-C-GTCTG--TGTG--T-TGTA---TA--GCCTGA-GAC--GATGGTATA
gi|10 : TTGCA-CTG----AGAATAA-TTA-TATATATT----CATGTC-AA----ATA-------ATAAACAATA----TTTCTCTCTCATTCCATTACAT-TG-TTCAGT-G--ATT-T---CTGTT-GT--TGACA---TTT-TA--A---A-AT-G-----CG-T------A-----A-A-CAAAAC-AC--AAT-CT--G-AA--TTATTCCTTCTCCTTGAGCC-A----AAACC---A-A-AGTAGAGTAG-A--CTGT-TGG-TAGAAATTACTTAATCA-CAGTATG--TGCT--T-CGTATTCTT--GCCTGA-GAG--GATGGTATa
gi|11 : TAAATAAGA-CAAT--A---------CTGCTACA--TG-TATATTTG--TTT-T---TTATT-ACA-TTGCA---TTCGTA--ATATA-AT-TTCTTTCT-C------AT----T---CAA----A---GAT-TT--------TTGCTATTATATAT--GGCA-A----ACAAC---A-G-AGCAGAGTAG-A--CT-A-TGG-TAGAAA-GACTT
gi|12 : ttagggtgaattttaagaaatgctgttatgtattgtatgtactttttggttgttctctcttccttgacaggagtaacatatatttA-CTT-TAT-T--T--GTC-TTTT---TA-AATG-C-CAC-CTAG-CGACAGTTGTTCC---------CTATTACAC--G-TTC----------------TATTCGT--TGGCA---TTT-GAT-ATA-A-TTTG-----CT-C-----------------------------T-TT--T-AA--TT-CCCTCCTTTT---AGCA-ATCCGAACAT---A-C-AGCAGAGAAG-GACCT-T-TGG-TAGAAA-AACTT--TCATC-AACAG--TATG--T-T
gi|13 : gttgtatgtgctttaaatttTTTC---------CTATTACTC-TG-TTCAGC-G--ATT-T---CTATT-AT--TGGCA----TT-TA--TTA-A-AT-G-----TT-C------ATA---A-A-CAA--C-AC--AAT-TT--G-AA--TTACTCTTATTCCTTGGGC--A----AAAAC---A-A-AGCAGAGAAG-A--CT-T-GGG-TAGAAA-GACTTATTCA-C-G--TA--TGTT--T-TGTA---AA--GCCTGA-TAC--GATGGTcattcttatatctgtctgatattcttg
gi|14 : attttatttgacatcaagctccttat-TCCAGT-T--ATTATCAGTTATT-ATGTTGGCAGATCCT-CA--ATG-ATAC-G------T-C------GT----C-A-CAC--C-ACGAAAT-TTCGA-AA--TTACTCTTATTCCTTGCGCA-A----AAGAA---A-A-AACAgcaa
gi|15 : taggtgtatgtacgtttggagtttttttttaaataatatggagcatatgaatgtagattaattattcAGT-G---TT-T---TTATT-AT--TCGCA---TTT-TA--ATA-A-AT-G-----CT-C------AT----A-AACAA--C-AC--AAT-TT--G-AA--TTACTTTTATTTCTTGGGCA-A----AAAAC---A-A-AACAGAGTAG-A--CT-T-TGG-TAGAAA-GACTTAATCA-C-GTCTG--TGTG--T-TGTA---TA--GCCTGA-GAC--GATGGTATa
gi|16 : -TTTGGT-A--ATT-T---T-GTT-----TGGCA---TTT-GA--ATA-A-AT-G-----CT-C------ATTTACA-A-CAA--CCAC--A----T--G-AACATTA-TGTTATATCT--GGCA-A----AAAAC---A-G-AGCAGAGTAG-A--CT-CATGGATTGAGA-G---TGAT-----GTTTA--TATA--CAAGAA---AA--GCAAGA--AC--GATGGTATA
gi|17 : -A----AAAACCGCA-A-AGCAGAGTAG-A--CT-T-TGG-AAAAAC-GACTTAATCA-CAGTATG--TGTT--T-TATA---CA--GCCAAA-GAT--GAAGG
gi|18 : ----AAAAT---A-A-AACAGAGTAT-A--CT-T-TTG-TAGAAA-GACTGAATCA-C-A-ATA--TGTT--T-TATA---CA--GCCTGA-GAC--GATGGTATAga
gi|19 : T--TGGCA---TTT-TA--ATA-A-AT-G-----CT-C------ATA---A-A-CAA--C-GC--AAT-TT--G-AA--TT
gi|2 : GTATATTTTTCCATTATAT--G-AGT------TGTAGTTAGGCCATGTAT-ACTGGTAGTTGT-----------ATGT--------G---CTTTTTGAGTTAT-TTT--T---T--ACATAGGACAGTTGTATGTATGTTATTTTCCTATTACA-CTGTTC-AG--TGA-TTT-TAT-TTTT--GGCATTTT-AATA-AATG-C-T-C-ATAAACAACA-CAATTTC---------CTATTACAC-TG-TTCAGT-G----T-T---TTATT-AT--TGGCA---TTT-TA--ATA-A-AT-G-----CT-C------AT----A-A-CAA--C-AC--AAT-TT--G-AA--TTGCTTTTATTTCTTGGGCA-A----AAAAC---A-A-AGCAG-GTAG-A--CT-T-T-G-TAGAAA-GACTTAATCA-C-GTCTG--TGTG--T-TGTA---TGACGCCTGA-GAC--GATGGTATA
gi|3 : aTATATTTT-CCATTATATTGA-AGT------TGTAG-TAGG-CATGTAT-ACTGGTAGTTGT-----------ATGT--------G---CTTTTTGAGTTTT-TTT--T---T--GCATCGGAC-GTTGTATGTATG-TATTTTCCTAATTCA-CTGTTCAAG--TGA-TTT-TAT-TTTT--GGCATTTTAAATA-A--G-C-T-C-ATAA--AACA-CATTTTC---------CTATT-CAC-TGTTTCAGT-----TT-T---TTATT-AT--TGGCA----AT-TA--ATA-C-AT-G-----CT-CCATTAAAT------A-CAA----AC--AAT-TT--GAAA--TTGTTTTTATTTCT--GGCACA----AAAAC---A-AGAGCAGAGTAGAA--CT-T-TGG-TAG-AA-GACTTAAT-A-C-GTCTGTTTGTGGTT-TGTA---TA--G-CTGA-GAC--GATGGTATA
gi|4 : TATTTTTCCATTAT----G-AGT------TGTAGTTAG-CCATGTAT-ACTGGTAGTTGT-----------ATG---------G---CTTTTTGAGTTAT-TTT--T---T--ACA--AGACAGTTGTAT-TATGTTATTTCC--ATTACA-CTTTTC-AG---GA-TTT-TAT-TTTT--TGCATTTT-AATACAATG-C-T-CGATAAACAACA-CAATTTC---------CTAT-ACAC-TG-TTCGGT-G---TT-T---TTATT-AT--TGGCA---TTTGTA--ATA-A-AT-G-----CT-C------AC----A-AACAA--C-AC--AAT-TTT-G-AA--TTGCTTTTATTTTTTGG-CA-A----AAAAC---ACA-AGCCGAGTAG-A--CT-T-T-G-TAAAAG-GACTTAATCA-C-GTCTG--TGTG--T-T-TA---TA--GCCTGATGAC--A--GGTATAa
gi|5 : TATATTTTTCCATTAT-T--G-AGT------TG------------GTATTACTGGTAGTTGT-----------ATGT--------G----TTTTTGAGTTAT-TTT--T------ACATAGGACAGT-GTATGT-TGT-ATTTTC-TATTACA-CTGTTC-AGC-TGA-TTT-TAT-TTTTTTGGCATTTT-AATA-AATGAC-T-C-ATAT-CAACA-CA-TTTC---------CTATTACAC-TG-ATCAGT-GTTCTT-T---TTATT-AT--TGGCA---TT---A--ATA-A-AT-G-----C--C------AT----A-AACAA--CGAC--A-T-TT--G-AA--TTGCTTTTATT-CTTGG-CA-A----AA-AC---A-A-AGCAGAGTAG-A--CT-T-TGG-TAGAAA-GACTTAATCA-A-CTCTG--TGTG--T-TG-----TA--G-CTGA-GACGTGATGG
gi|6 : TTTACATAATAT--GTAGTATACTGTGTAGTTAGATCATGTAT-ACTTGTA--TGT-----------ACGTTTTTAGTTA---TTTTTTAAGTTTT-TTT--TATTT--ACAGTGGACAGT-GT---TATGCTATTTTTCTATTACA-CTGTTC-AA--TGA-TTTCTAT-TGCT--GCCGTTTT-GAAA-AATG-T-T-T-CTACGCAACA-CAATTT
gi|6 : tattgtgaactcaTTTT---------CTATTACAC-TG-TTCAAT-G--ATT-T---CTATT-GC--TGCCG---TTT-TG--AAA-A-AT-G-----TT-T------CT----ACG-CAA--C-AC--AAT-TT--G-AA--TTACTCTTATCCCTTTAACA-A----AAAG------------GAGTAG-A--CT-T-TGG-TAGAAA-GACTTAATCA-CAGTATG--TATT--C-TATA---CC--TCCTGA-GAT--AATGGTATAgaattactcttatccctttaacaaaaaggagtagactttggtagaaagacttaatcacagtatgtattctatacctcctgagataatggtata
gi|7 : tattgtgaactcatttacataatatgtagtatactgtgtagttagatcatgtatacttgtatgtacgtttttagttattttttaagttttttttatttacagtggacagtgttatgctatTTTACAT-ATAT--G-TGTATACG-TGTAGTTAGATCATGTAT-ACTTGTA--TGT-----------ACGTTTTTA---GTTTTTTTTTAAGTTTT-TTTTAT---T--ACGT-GGACAG-TGT---TA-GCTATTTTTCTATTACACCTGTTC-AA--TGA-TTTCTAT-TGCT--GCCGTTTG-AA-A-AATG-T-T-T-CTACGCAACA-CA--TTT---------GAATTACTC-TA-TCC
gi|7 : aagtattgtgaactcaTTTT---------CTATTACACCTG-TTCAAT-G--ATT-T---CTATT-GC--TGCCG---TTT-GA--A-A-A-AT-G-----TT-T------CT----ACG-CAA--C-AC--A-T-TT--G-AA--TTACTCT-ATCCTTT-------------AAC---A-A-AAAGGAGTAG-A--CT-T-TGG-TAGAAA-GACTTAATCA-C-G--TA--TGTA--T-TCTA---TA--CTCTGA-GAT--AATGGTATAtttaacaaaaaggagtagactttggtagaaagacttaatcacgtatgtattctatactctgagataatggtata
gi|8 : aagtattgtgaactcatttacatatatgtgtatacgtgtagttagatcatgtatacttgtatgtacgtttttagtttttttttaagttttttttattacgtggacagtgttagctatTAT-ACTTGTAGTTGT-----------GTGT--------G---CTTTTTGAGTTATCTTT--T---T--ACATAGGACAGTTGTATGCATGTTATTTTCCTATTACA-CTGTTC-AG--TGATTTT-TAT-TATT--GGCATTTT-AATA-AATG-C-T-C-ATAAACAACA-CAATTT
gi|8 : taggatcactagttTTTC---------CTATTACAC-TG-TTCAGT-G--ATT-T---TTATT-AT--TGGCA---TTT-TA--ATA-A-AT-G-----CT-C------AT----A-AACAA--C-AC--AAT-TT--G-AA--TTACTCTTATTTCTTGGGCA-A----AAAAC---A-A-AGCAGAGTGG-A--CT-T-TGG-TAGAAA-GACTTAATCA-C-GTATG--TGTG--T-TGTA---TA--TCCTGA-GAC--GATGGTATgaattactcttatttcttgggcaaaaaacaaagcagagtggactttggtagaaagacttaatcacgtatgtgtgttgtatatcctgagacgatggtat
gi|9 : taggatcactagtttatacttgtagttgtgtgtgctttttgagttatctttttacataggacagttgtatgcatgttatATAGTTGTATTTATGTTATTTTCCTATTACA-CTGTC---G--TGA--TT-TAT-T-TT--GGCATTTT-AATA-AATG-CTT-C-ATAAACAA-A-CAAT
gi|9 : attaagatctcattaccttacacgtactaagtatacttgtatttcatttactcttactgaatgtTTTC---------CTATTACAC-TG-TC--GT-G--ATT-T-----ATT--T--TGGCA---TTT-TA--ATA-A-AT-G-----CTTC------AT----A-AACAA----AC--AATATT--G-AA--TTGCTTTTATTTCTTGGGCA-A----AA--C---A-A-AGCAGAGTAG-A--CT-T-T---TAGAAA-GA-TTAATTA-C-GT-TG--TGTG--T-TGTA---TA--GCCTGA-GAC--GATGGTattgaattgcttttatttcttgggcaaaacaaagcagagtagacttttagaaagattaattacgttgtgtgttgtatagcctgagacgatggttaataa