lowQualScore : 1 7 8 3
lowQualScore : . . . .
lowQualScore : 0 1 9 7
consensus : CATTACCTCCGCCAAG-GAGGTTATAAAATCGGNGGCGTTTA
Reference ( gi|12 ) : CATTACCTCCGCCAAG-GAGGTCATAAAATCGGTGGCGTTCA
gi|27 : CATGAACTCCTCCAAA-GGGGTTATAAAATCGGTGGCGTT
gi|4 : CATTACCTCCGCTAAG-GAGGTTA-GGAGTTGGCGGCGTTT
gi|18 : ATTACCTCCGCCAAG-GAGGTTATAAAATTAGAGGCGTTttcat
gi|11 : ATTATCTTGGCCAAG-GAGGTTATAAAATCGGTGTCGCTTga
gi|32 : ATTACCCCCGCCAAG-AAGGTTATAAAATCGGAGGtt
gi|23 : tATTACCTACGCCAAG-GAGGTTATGAAATCGGAGGCt
gi|36 : ATTACCTCCGCCAAG-GAGATTATAAAATCGtgtgg
gi|3 : cctttATTACCTCCGCCAAG-G-GGTTATAAACTCTGCGGCGGTC
gi|15 : ATTACCTCCGCCAGG-GAGGTTATCAAATCGGttactt
gi|38 : tgctttgATTACCCCCGCCAAG-GAGGTTACAAAATCGctg
gi|21 : ttataATTACTTCCGCCTAG-GAGATTGTAAAATCGGTAGC
gi|28 : acattATTACTTCCGCCGAA-AAGATTATAAAATCGAAGGCGTT
gi|6 : ATTACCTCAGCCTAG-GAGGTTATTAAATCAGCGGTGTTT
gi|8 : ATCACCTCCGCCAAA-AAGAGTATAAAATCGGCGGCTTTTttca
gi|26 : tTTACCTCTGCCAAG-GAGGTAATAAAATCGGTGGCGTTTtt
gi|13 : TTACCTCTGCCAGG-GAGGTTATAAAATCGGTGACGTTT
gi|9 : gTTACCTCCGCCAAG-GAGCTTATAAAATCGTCGGCGTTTt
gi|39 : TTACCTCCGCCAAG-GAGGGTATAAAATCGGCGGttta
gi|29 : ttTTACCTCCGCCAAG-GAGATTTTAAAATCGGAGGCATT
gi|14 : TTACCTACGCCAAG-GAGGTTATAAATTCGGCGGCGt
gi|37 : TTACCTCCACCAAG-GAGGTAATAAAATCGGAGGTGattatt
gi|7 : TTAACTCCGCTAAG-GAGGTTGTAAAATCGGAAGCGTTT
gi|17 : TTACTTTCGCCAAG-GAGGTTATAAAATTGGAGTCGTTTttta
gi|31 : tTTACTTCCGCCAAG-GAGGTATTAAAATCGGGGGCAT
gi|16 : ttTTAC-TCCGCCAAG-GATGATATAAAATCGGAGGCGTT
gi|2 : TTACCTCCGCCAAGAGAAGCAATAAAATTGACGGCGTTtgttt
gi|34 : TTGCCTCCGCCAAA-AAAGTTATAAAATCAGCGGCGatctgtt
gi|35 : tTTGCCTCCATCAAG-GAGGTTATGAAATTGGCGGC
gi|22 : tgTTACCTCCG-CAAG-GA-GTTATCAAATCAGAGGCGTTT
gi|41 : TTTCCTCGACCAAG-GAGGTTATAAAATCGGttt
gi|19 : tttTACCTCCGCCAAG-GAGGTTAGAAAACCGGAGGCGTTTa
gi|24 : TACCTCTGCCAAG-GAGGTTATAAAATCTGAGGCATTtt
gi|25 : TACCTCTGTCGAG-GAGGTTGTAAAATCGGAGGCGTTTtgt
gi|33 : TACCTCTGCTTAG-GAGGTTACAAAATCGGGGGCGTTt
gi|40 : TACCTCCGTCAAG-AAGATTATAAAATCGGAGG
gi|42 : TACCCCCGCCAAG-GAGATTATACAATCAGCGGCgg
gi|43 : TACCTCCGCTAAA-GACGTAATAAAATCGGAGGC
gi|30 : ACATCCACCAAG-GAAGTTATAAAATCAGTGGCGTT
gi|1 : CCTCAGCCAAG-GAGAGTACAAAATCGGCAGAGTTtct
gi|20 : ctCTCCGCTAGG-GAGGTTATAAAATCGGAGGCATCCggttaatttatta
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): ATTATTTCCGCAAAGGAGATCAGAAAGTCGGCGGCGTTGGTCTAT
Unaligned ( gi|10 ): TCTACGTCCGTCATGGAGATTATGAAATCGATCGGAGGCGCTT
Unaligned ( gi|44 ): ACCTGCGCCAGGTAGGTTATAAATTCGGCGG
Alignments
lowQualScore : 1 1
lowQualScore : . .
lowQualScore : 0 0
consensus : CATTACCTCCGCCAAG-GAGGTTATAAAATCGGNGGCGTTTA
Reference ( family-3445 ) : CATTACCTCCGCCAAG-GAGGTTATAAAATCGGNGGCGTTTA
gi|1 : CCTCAGCCAAG-GAGAGTACAAAATCGGCAGAGTT
gi|11 : ctATTATCTTGGCCAAG-GAGGTTATAAAATCGGTGTCGCTTAggttaatttatta
gi|12 : CATTACCTCCGCCAAG-GAGGTCATAAAATCGGTGGCGTTCAtt
gi|13 : TTACCTCTGCCAGG-GAGGTTATAAAATCGGTGACGTTTA
gi|14 : gTTACCTACGCCAAG-GAGGTTATAAATTCGGCGGCGATTAt
gi|15 : ATTACCTCCGCCAGG-GAGGTTATCAAATCGGtt
gi|16 : tgctttgTTAC-TCCGCCAAG-GATGATATAAAATCGGAGGCGTTTctg
gi|17 : TTACTTTCGCCAAG-GAGGTTATAAAATTGGAGTCGTTTAgttt
gi|18 : tATTACCTCCGCCAAG-GAGGTTATAAAATTAGAGGCGTT
gi|19 : TACCTCCGCCAAG-GAGGTTAGAAAACCGGAGGCGTTTAga
gi|2 : TTACCTCCGCCAAGAGAAGCAATAAAATTGACGGCGTTtt
gi|20 : CTCCGCTAGG-GAGGTTATAAAATCGGAGGCATatctgtt
gi|21 : ATTACTTCCGCCTAG-GAGATTGTAAAATCGGTAGCccattcat
gi|22 : acattTTACCTCCGC-AAG-GAG-TTATCAAATCAGAGGCGTTTA
gi|23 : ATTACCTACGCCAAG-GAGGTTATGAAATCGGAGGCttt
gi|24 : TACCTCTGCCAAG-GAGGTTATAAAATCTGAGGCATTTtgtgg
gi|25 : TACCTCTGTCGAG-GAGGTTGTAAAATCGGAGGCGTTTAgt
gi|26 : TTACCTCTGCCAAG-GAGGTAATAAAATCGGTGGCGTTTAt
gi|27 : CATGAACTCCTCCAAA-GGGGTTATAAAATCGGTGGCGTT
gi|28 : ATTACTTCCGCCGAA-AAGATTATAAAATCGAAGGCGTT
gi|29 : TTACCTCCGCCAAG-GAGATTTTAAAATCGGAGGCATTT
gi|3 : ATTACCTCCGCCAAG-G-GGTTATAAACTCTGCGGCG
gi|30 : ACATCCACCAAG-GAAGTTATAAAATCAGTGGCGTTTgtcattactt
gi|31 : TTACTTCCGCCAAG-GAGGTATTAAAATCGGGGGCATct
gi|32 : ttATTACCCCCGCCAAG-AAGGTTATAAAATCGGAGG
gi|33 : tTACCTCTGCTTAG-GAGGTTACAAAATCGGGGGCGTTt
gi|34 : TTGCCTCCGCCAAA-AAAGTTATAAAATCAGCGGCG
gi|35 : tTTGCCTCCATCAAG-GAGGTTATGAAATTGGCGGC
gi|36 : tgATTACCTCCGCCAAG-GAGATTATAAAATCG
gi|37 : cctttTTACCTCCACCAAG-GAGGTAATAAAATCGGAGGTG
gi|38 : ATTACCCCCGCCAAG-GAGGTTACAAAATCG
gi|39 : ttataTTACCTCCGCCAAG-GAGGGTATAAAATCGGCGG
gi|4 : ttCATTACCTCCGCTAAG-GAGGTTA-GGAGTTGGCGGCGTTTA
gi|40 : TACCTCCGTCAAG-AAGATTATAAAATCGGAGGttcat
gi|41 : TTTCCTCGACCAAG-GAGGTTATAAAATCGGgg
gi|42 : tttTACCCCCGCCAAG-GAGATTATACAATCAGCGGCa
gi|43 : TACCTCCGCTAAA-GACGTAATAAAATCGGAGGC
gi|44 : ACCTGCGCCAGG-TAGGTTATAAATTCGGCGG
gi|6 : ATTACCTCAGCCTAG-GAGGTTATTAAATCAGCGGTGTTTA
gi|7 : TTAACTCCGCTAAG-GAGGTTGTAAAATCGGAAGCGTTTAttca
gi|8 : ATCACCTCCGCCAAA-AAGAGTATAAAATCGGCGGCTTTTAttta
gi|9 : tTTACCTCCGCCAAG-GAGCTTATAAAATCGTCGGCGTTTAtt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ATTATTTCCGCAAAGGAGATCAGAAAGTCGGCGGCGTTGGTCTAT
Unaligned ( gi|10 ): TCTACGTCCGTCATGGAGATTATGAAATCGATCGGAGGCGCTT
Alignments
lowQualScore : 1 1
lowQualScore : . .
lowQualScore : 0 0
consensus : CATTACCTCCGCCAAG-GAGGTTATAAAATCGGNGGCGTTTA
Reference ( family-3445 ) : CATTACCTCCGCCAAG-GAGGTTATAAAATCGGNGGCGTTTA
gi|1 : CCTCAGCCAAG-GAGAGTACAAAATCGGCAGAGTT
gi|11 : ctATTATCTTGGCCAAG-GAGGTTATAAAATCGGTGTCGCTTAggttaatttatta
gi|12 : CATTACCTCCGCCAAG-GAGGTCATAAAATCGGTGGCGTTCAtt
gi|13 : TTACCTCTGCCAGG-GAGGTTATAAAATCGGTGACGTTTA
gi|14 : gTTACCTACGCCAAG-GAGGTTATAAATTCGGCGGCGATTAt
gi|15 : ATTACCTCCGCCAGG-GAGGTTATCAAATCGGtt
gi|16 : tgctttgTTAC-TCCGCCAAG-GATGATATAAAATCGGAGGCGTTTctg
gi|17 : TTACTTTCGCCAAG-GAGGTTATAAAATTGGAGTCGTTTAgttt
gi|18 : tATTACCTCCGCCAAG-GAGGTTATAAAATTAGAGGCGTT
gi|19 : TACCTCCGCCAAG-GAGGTTAGAAAACCGGAGGCGTTTAga
gi|2 : TTACCTCCGCCAAGAGAAGCAATAAAATTGACGGCGTTtt
gi|20 : CTCCGCTAGG-GAGGTTATAAAATCGGAGGCATatctgtt
gi|21 : ATTACTTCCGCCTAG-GAGATTGTAAAATCGGTAGCccattcat
gi|22 : acattTTACCTCCGC-AAG-GAG-TTATCAAATCAGAGGCGTTTA
gi|23 : ATTACCTACGCCAAG-GAGGTTATGAAATCGGAGGCttt
gi|24 : TACCTCTGCCAAG-GAGGTTATAAAATCTGAGGCATTTtgtgg
gi|25 : TACCTCTGTCGAG-GAGGTTGTAAAATCGGAGGCGTTTAgt
gi|26 : TTACCTCTGCCAAG-GAGGTAATAAAATCGGTGGCGTTTAt
gi|27 : CATGAACTCCTCCAAA-GGGGTTATAAAATCGGTGGCGTT
gi|28 : ATTACTTCCGCCGAA-AAGATTATAAAATCGAAGGCGTT
gi|29 : TTACCTCCGCCAAG-GAGATTTTAAAATCGGAGGCATTT
gi|3 : ATTACCTCCGCCAAG-G-GGTTATAAACTCTGCGGCG
gi|30 : ACATCCACCAAG-GAAGTTATAAAATCAGTGGCGTTTgtcattactt
gi|31 : TTACTTCCGCCAAG-GAGGTATTAAAATCGGGGGCATct
gi|32 : ttATTACCCCCGCCAAG-AAGGTTATAAAATCGGAGG
gi|33 : tTACCTCTGCTTAG-GAGGTTACAAAATCGGGGGCGTTt
gi|34 : TTGCCTCCGCCAAA-AAAGTTATAAAATCAGCGGCG
gi|35 : tTTGCCTCCATCAAG-GAGGTTATGAAATTGGCGGC
gi|36 : tgATTACCTCCGCCAAG-GAGATTATAAAATCG
gi|37 : cctttTTACCTCCACCAAG-GAGGTAATAAAATCGGAGGTG
gi|38 : ATTACCCCCGCCAAG-GAGGTTACAAAATCG
gi|39 : ttataTTACCTCCGCCAAG-GAGGGTATAAAATCGGCGG
gi|4 : ttCATTACCTCCGCTAAG-GAGGTTA-GGAGTTGGCGGCGTTTA
gi|40 : TACCTCCGTCAAG-AAGATTATAAAATCGGAGGttcat
gi|41 : TTTCCTCGACCAAG-GAGGTTATAAAATCGGgg
gi|42 : tttTACCCCCGCCAAG-GAGATTATACAATCAGCGGCa
gi|43 : TACCTCCGCTAAA-GACGTAATAAAATCGGAGGC
gi|44 : ACCTGCGCCAGG-TAGGTTATAAATTCGGCGG
gi|6 : ATTACCTCAGCCTAG-GAGGTTATTAAATCAGCGGTGTTTA
gi|7 : TTAACTCCGCTAAG-GAGGTTGTAAAATCGGAAGCGTTTAttca
gi|8 : ATCACCTCCGCCAAA-AAGAGTATAAAATCGGCGGCTTTTAttta
gi|9 : tTTACCTCCGCCAAG-GAGCTTATAAAATCGTCGGCGTTTAtt
blockSeqs : T
blockSeqs : T
blockSeqs : T
blockSeqs : C
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : C
blockSeqs : A
blockSeqs : T
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : A
blockSeqs : T
blockSeqs : T
blockSeqs : A
blockSeqs : A
blockSeqs : C
blockSeqs : T
blockSeqs : G
blockSeqs : A
blockSeqs : G
blockSeqs : C
blockSeqs : C
blockSeqs : A
blockSeqs : C
blockSeqs : C
blockSeqs : A
blockSeqs : C
blockSeqs : A
blockSeqs : C
blockSeqs : C
blockSeqs : A
blockSeqs : C
blockSeqs : C
blockSeqCons :
originalCons : CATTACCTCCGCCAAG-GAGGTTATAAAATCGGNGGCGTTTA
finalCons : CATTACCTCCGCCAAG-GAGGTTATAAAATCGGNGGCGTTTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ATTATTTCCGCAAAGGAGATCAGAAAGTCGGCGGCGTTGGTCTAT
Unaligned ( gi|10 ): TCTACGTCCGTCATGGAGATTATGAAATCGATCGGAGGCGCTT
Alignments
lowQualScore : 1 1
lowQualScore : . .
lowQualScore : 0 0
consensus : CATTACCTCCGCCAAG-GAGGTTATAAAATCGGNGGCGTTTA
Reference ( family-3445 ) : CATTACCTCCGCCAAG-GAGGTTATAAAATCGGNGGCGTTTA
gi|1 : CCTCAGCCAAG-GAGAGTACAAAATCGGCAGAGTT
gi|11 : ctATTATCTTGGCCAAG-GAGGTTATAAAATCGGTGTCGCTTAggttaatttatta
gi|12 : CATTACCTCCGCCAAG-GAGGTCATAAAATCGGTGGCGTTCAtt
gi|13 : TTACCTCTGCCAGG-GAGGTTATAAAATCGGTGACGTTTA
gi|14 : gTTACCTACGCCAAG-GAGGTTATAAATTCGGCGGCGATTAt
gi|15 : ATTACCTCCGCCAGG-GAGGTTATCAAATCGGtt
gi|16 : tgctttgTTAC-TCCGCCAAG-GATGATATAAAATCGGAGGCGTTTctg
gi|17 : TTACTTTCGCCAAG-GAGGTTATAAAATTGGAGTCGTTTAgttt
gi|18 : tATTACCTCCGCCAAG-GAGGTTATAAAATTAGAGGCGTT
gi|19 : TACCTCCGCCAAG-GAGGTTAGAAAACCGGAGGCGTTTAga
gi|2 : TTACCTCCGCCAAGAGAAGCAATAAAATTGACGGCGTTtt
gi|20 : CTCCGCTAGG-GAGGTTATAAAATCGGAGGCATatctgtt
gi|21 : ATTACTTCCGCCTAG-GAGATTGTAAAATCGGTAGCccattcat
gi|22 : acattTTACCTCCGC-AAG-GAG-TTATCAAATCAGAGGCGTTTA
gi|23 : ATTACCTACGCCAAG-GAGGTTATGAAATCGGAGGCttt
gi|24 : TACCTCTGCCAAG-GAGGTTATAAAATCTGAGGCATTTtgtgg
gi|25 : TACCTCTGTCGAG-GAGGTTGTAAAATCGGAGGCGTTTAgt
gi|26 : TTACCTCTGCCAAG-GAGGTAATAAAATCGGTGGCGTTTAt
gi|27 : CATGAACTCCTCCAAA-GGGGTTATAAAATCGGTGGCGTT
gi|28 : ATTACTTCCGCCGAA-AAGATTATAAAATCGAAGGCGTT
gi|29 : TTACCTCCGCCAAG-GAGATTTTAAAATCGGAGGCATTT
gi|3 : ATTACCTCCGCCAAG-G-GGTTATAAACTCTGCGGCG
gi|30 : ACATCCACCAAG-GAAGTTATAAAATCAGTGGCGTTTgtcattactt
gi|31 : TTACTTCCGCCAAG-GAGGTATTAAAATCGGGGGCATct
gi|32 : ttATTACCCCCGCCAAG-AAGGTTATAAAATCGGAGG
gi|33 : tTACCTCTGCTTAG-GAGGTTACAAAATCGGGGGCGTTt
gi|34 : TTGCCTCCGCCAAA-AAAGTTATAAAATCAGCGGCG
gi|35 : tTTGCCTCCATCAAG-GAGGTTATGAAATTGGCGGC
gi|36 : tgATTACCTCCGCCAAG-GAGATTATAAAATCG
gi|37 : cctttTTACCTCCACCAAG-GAGGTAATAAAATCGGAGGTG
gi|38 : ATTACCCCCGCCAAG-GAGGTTACAAAATCG
gi|39 : ttataTTACCTCCGCCAAG-GAGGGTATAAAATCGGCGG
gi|4 : ttCATTACCTCCGCTAAG-GAGGTTA-GGAGTTGGCGGCGTTTA
gi|40 : TACCTCCGTCAAG-AAGATTATAAAATCGGAGGttcat
gi|41 : TTTCCTCGACCAAG-GAGGTTATAAAATCGGgg
gi|42 : tttTACCCCCGCCAAG-GAGATTATACAATCAGCGGCa
gi|43 : TACCTCCGCTAAA-GACGTAATAAAATCGGAGGC
gi|44 : ACCTGCGCCAGG-TAGGTTATAAATTCGGCGG
gi|6 : ATTACCTCAGCCTAG-GAGGTTATTAAATCAGCGGTGTTTA
gi|7 : TTAACTCCGCTAAG-GAGGTTGTAAAATCGGAAGCGTTTAttca
gi|8 : ATCACCTCCGCCAAA-AAGAGTATAAAATCGGCGGCTTTTAttta
gi|9 : tTTACCTCCGCCAAG-GAGCTTATAAAATCGTCGGCGTTTAtt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ATTATTTCCGCAAAGGAGATCAGAAAGTCGGCGGCGTTGGTCTAT
Unaligned ( gi|10 ): TCTACGTCCGTCATGGAGATTATGAAATCGATCGGAGGCGCTT