lowQualScore : 3 111111 44444444444444444444444 11 3333333333333333 22222222 11 111 22222 1 6666666 111 2222222 11 111 111 111111 2222222222222222222222222222222222 1111111 111 1 3333333333 44444444444444444 1111 22222
lowQualScore : 2 3 2 4 3 55 44 2 2 9999 44 77 44 2 1 77 6 9999 555555 999 2 33 2 1 2 3 55555555555555555555555 33 444 888888 888 1 4 55 0 66 5 0 7777 3 77 66 0 5 4444444444444444 00000000 6 6 00 333 44444 1 3 8 6 1 0000000 6 222 6 3 7777777 99 99 66 8 8 6 33 88 5 000 222 222222 5 3 2 6 6666666666666666666666666666666666 4 0 3333333 6 5 9 5 000 77 7 2222222222 99 22222222222222222 1111 3 2 00000 2
lowQualScore : . . . . . .. .. . . .... .. .. .. . . .. . .... ...... ... . .. . . . . ....................... .. ... ...... ... . . .. . .. . . .... . .. .. . . ................ ........ . . .. ... ..... . . . . . ....... . ... . . ....... .. .. .. . . . .. .. . ... ... ...... . . . . .................................. . . ....... . . . . ... .. . .......... .. ................. .... . . ..... .
lowQualScore : 5 6 0 8 1 22 22 9 8 6666 22 33 22 9 5 33 4 9999 333333 333 7 77 7 4 7 1 77777777777777777777777 66 777 666666 555 9 4 00 4 99 0 4 4444 0 66 99 4 0 7777777777777777 33333333 7 7 22 555 77777 0 3 2 7 0 0000000 3 777 7 5 5555555 22 22 88 0 0 0 00 22 7 000 111 333333 7 6 5 7 0000000000000000000000000000000000 4 1 4444444 0 7 3 9 999 11 1 1111111111 22 66666666666666666 2222 2 5 55555 5
consensus : GTNA-TCAAAAT-TCCTCAAC-GATC--GGGC-TAGTAA-A--TATTA--GA--TGTG--TGCGC-GTCCAG--GATT-TTATC---GCATGC------ACT---TCCAC-TTT--T-GTTAAGT-TGTACTACGAA-GTA--A-------------C-G----CAATA-TAG-A-TAAC-----GAATG-T-TTTTAAGAGCGA-GTTACTTTAAGTAG--AG-TATACAA-TC-GGNATTCC-TC--GGATGATTC-CAC-TA-----TACACA--AGG---T-ACAAATCAAAGGAG-GAG-TTC-CGA-A-TTAGTATG--TTCAAGAACGC-GCGTCT-GACTCTT-A---CGGCGTCTAG-A-TTC-ATAGA--AT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTTA-A---GCAA-TATACT----T-C-AATAAATCAATCA-ATAT-------CCC-GTGACA--TT-ACATTTNCAC-CA-AATGA-T-----AGGTAAGAATGACTTC-GAATTNTTTCAAG--GAC-TAAGC-AAAAACATG-GATA-AAGAA--TCGTAAGCTA-AT-GTG--T-TT--CTTGTAGCCGGGAGGTTCGAGCTC-T-ACTCGTGTCATAGC
Reference ( gi|4 ) : GTGA-TCAAAAT-TCCTCAAT-AATC--GGGC-TAGTAA-A--TATTA--GA--TGTG--TGCGC-GTCCAG--AATTGTTATC---ACATGC------ACT---TCCAC-TTT--T-GTTAAGT-TGTACTACAAA-GTA--A-------------A-G----CAATA-TAG-A-TAAC-----GAATG-T-TTTTAAGAGTGA-GTTACTTTAAGTAG--AG-TATACAA-TC-GGAATTCT-TC--GAATGATTC-CAC-TA-----TACA-A--AGG---T-ACAAATCAAAGGAG-GAG-TTT-CGA-A-TTAGTTTG--TTCAAGAACGC-GCATCT-GACTCTTCAGCGCGGCGTCCAG-A-TTC-ATAGA--GT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTTA-A---GCAA-TATACT----T-C-AATAAATCAATCA-ATAT-------CCC-GTGACA--TT-ACATTTACAC-CA-AATGA-T-----AGGTAAAAATGGCTTC-AATTTTTTTCAAG--GAC-TAAGC-AAAAACATA-GATA-AAGAA--TCGTAAGCTA-AT-GTG--T-TC--CTTGTAGCCGGGAGGTTCGAGCTC-T-ACTCGTGTCATAGCCA
gi|2 : GTGAATAAAAAT-TCCTCAAT-CATC--GGGC-TCGTAA----TATTA--GA--T-TG--TGCGC-ATCCAGG-AATTTTAATT---GCATGC------A-T---TCCA--TTT--T-GTTA-GT-TGTTATACAA--GTA--C---------------G----TAATA-TAG---TA-------GAAT--T-TTTTAGAGGTGA-GTTACTTTA-GTAG--AG-TAATCAA-GT-GGAATTCCCTC--GAATGATTC-CAC--A-----TACACA--AGG---T-G---ATCAAAGGAG-G-G-TTCACGA-A-TTAGTA-G--TTCAAGAACGC-GCGTCT-GAATTT------CGGCGTCTAG-A-TTC-A-AGA--AT---AA--ATT-----TTTGCA-CATTC-TCAA-A-T-CAGAGAC-TTA-A---GCAAATATACT----T-C-AATAAAT-AATCA-GTAT-------CAC-GTGACA--TTTACATTTACGA--G-AATGA-T-----AGGTAGAA-TGACTTC-AAATTTTTTCAAG--GAC-T---C-AAGAA-------------AA--TCGTCAGCTACAT-GTAGTT-TT--CTTGTAGCCGGAAGGTTCGATCTC-T-A-TTGTGCCATAGC
gi|5 : agggcatcgaaataaacgatggccaaatggtaacgccataaattttggtttgggctaagtgatttgataaagagcatcgatactcggggctagacaacttattcttGTGA-T-AAAAT-GC-TCAAT-AATC--GG-C-TA-TAA-AAATATTA--G---TGTG---GCGT-GTTCCG--AATT--TAT----GCA-GC------ACT----CCAC-TTT--T-GTTAAGT-TGTACTACAAAAGTA--A-------------A-G----CAATA-CAG-ATTAAC-----GAATG---TTTTAAGAGTGA-GTTACTGTAAGTAG--AG-GATACAA-TC-GGAATGC--TC--GAAAGA-TC-CACTTA-----TAC--A--AGG---T-ACAAATCAAA-GAG-GAG-TTC-CGG-A-TTAGTATG--TTCAAG-ACGCGGCATCTGGACTCTTCAGCGCGGCGTCCAG-AGTTC-AAAGA--AT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTT--A---GC-A-TATACT----T-C-AATAAAACAATCA-ATATATATACACTCAATGATA---T-ACATATATACACACAATGA-T-----
gi|1 : tcagggctcgaaataaacgatggcagttaaatttgggtttgggcctaggatttataaagagcatcgagtcctcgggggcatagtaaaatttcatcttGTGA-TAAGAAT-TCCTCAAT-GATT--CGGC-TAGTAA----TATTA--GGATTGTGGGTGCGC-GTCCAG--A-TT-TTATG---A--TGC------ACT---TGCAT-TTT--T-GTTTAGT-TGT-CTACAAA-GTG--C-------------A-G----CAATG-TAGGA-TGAT-----G--TT-T-TTTTAAGA-TGA-GTTA-TTTAAGTAG--AG-TATACAACTA-GGAATTC--TC--GAATGATTT-CA--TA-----AGCACA--GGG---TGAC-AAT--AAGGAGAGAG--TT-CGA-ATTTAGTATG--TTCAA-AACGC-GC-TCT-GACTCTT-----CGGCGTCTAG-A-TTG-ATAGAATAT---AA--TGTCTACATTTG-GACATTCTTCAA-GAT--AGAGATGTTATA---GCAA-TATACT----T-C-AAT-ATTAAAT---ATAT-------ATC-ATGA-------------------A-AATGA-T-----AGGTAGGAA-GACTTC-AAATTATCTCAAG--GACTTAAGC-AAAAATG-G-GAT--AAGAA--TAGTAAGCTA-ATAGTG--TATT--CCTGTAGACTGGAGGTT-GAGCTCGTAACTCGTGT-ATAGC
gi|6 : agggctcagaataacgatgccgatggatccggggcgagtcattttgggtttgggctagtgatttggtaagagcatgcgtcctcgggctagtatttatttGTTA-TCAAAAT-CCCTCAAT-GATCACGGGC-TAGTAC-A--T-TTACAGA--TGTG--TGCGC-GTCCAG--A------------------------ACT---TCCAC-TTTTGT-GTTTAGT-TGTACTACGAA-GTAGTA-------------ACA----CAATAGTAT-A-TAAA-----GAATA-CGTTTTAAGAGCGATTTTATGTCATATAGTTAG-CGT-TAA-TCTAGCATTCT-TC--GGATGAATCTCAC-T------T-CA-AC-AGG---TAAAAAACCACAGGAG-GAGCTTC-CGACA-TTATTATGT-TTCAAGAA-----------GATTCTGTA--------------------ATAAA--------A--TGTCTAC-TTTGCAACACAT-TCGA-ATTCCAGAGACGTTA-A---GC----ATATT----TAC-AATCTATCAATCA-AGA--------ATC-GTATCA--TT-ATATTTTCAC-TA-
gi|12 : cagggtgtagaataaacgaggcccaccgattggtcggcggccagtaaattttggttttgggctagtttgatttctaaagagcatgcgtcctgctaggtgaaataactaGTTA-TCTAAAT-TCCTCAAT-GATC--GGGC-TAGTAA-A--TATTA--TA--TGTG--TGCGT-GTCCAA--AAGT-TTATC---GCATGC------ACT---TCCAC-GTT--T-GTTGAGT-TGTACTACAAA-GTA--A--------------------CAGCA-CAG-A-TAAT-----GAATG--------AGAGCGA-
gi|9 : gggctcaaaataatcgatggtctggggccggtaaattttgggatagggctagtgatttgtaaagagcatggggctagtcaatttaattaGTTA-TCAAATT-TCATCAAC-GATC--GGGC-TATTAA-A--TATTA--GA--TGTT--TGCAT-ATTCCG--GATT-TTATC---GCATGC------ACT---TCCAC-TTT--T-ACTAAGT-TGTAATA
gi|14 : agggctcgatgtaatcaacagcccgatgatttggggccagtaaattttgggtttgggctagtgatttgtaaaaagcatgcatccttgggctaattgatttcattaGTTA-TCAAATT-TCATCAACCGATC--GG-C-TATTAA----TATTA--GA--TGTT--TGCAT-ATTCCG--GATT--TATC---GCATGC------ACT---TCCAC-TTT--T-ACTAAG--TGTATTgtggtaacatgaaaaacatataaaaatattaagc
gi|3 : cagggctcgatgtaatcaacagcccgatgatttggggccagtaaattgggtttgggctagtgatttgtaaaagcatgcatccttgggctaattgatttcattaGA-TCAAATTGTCCTCAAT-GATT--GGGCCTAGTAA-A--TATTA--GAC-TG-G--TGCGT-GTCCAG--AATT-TTA-C---GCATGC------ACT---TCCAC-TTT--T-GTTAAGTATGT-CTACAAA-GTA--A-------------C-G----CAATA-TAG-A-TAAC-----GAATGTT-TTTTAAGAGTGA-GTTACTTTAAGTGG--AGTTATACA---C-AGAATTCC-TCGGGGATGATTC-CAC-TA-----CACA-AACAAGCTTT-ACAAATCAAAGGA--GAG-TTC-CGA-ATTTAGTATGTCTCCAAGAACGCGGCATCT-GACTTCTAAATG-GCCATCTAGAA-TTC-ATAAA--ATAAAAA--TGTCTAA-TTTTT-ACATTT-ACAACAAT-GATAGG---TA-A---G-A---ATACT----G-CGAATAAcagt
gi|8 : ggctcgaaatcaaacaatggcccgatgccagttaaattttgggtttggcgctgtaatgagcatgcacctcggtgctgagcaagatgtttacttgtgA-TTAAATT-TCCTCAAC-AATC--AAGC-TTCTAA-A--TATTA--GA--TGTA--TGTGC-ATCCAG--GATT-TTATCTTAATATGCAAAATGATTTAATTTAC-TTT--T-GTTAAGT-TAGACTATGAA-GTA--A-------------C-A----CAATG-TAG-A-TAAtttcacagactaagcaaaaaacatggataaagaatttcgtaagctaatgagttttgcttgtaggcgcgtgagttcgtgtcata
gi|10 : ggctcaaaataattgatcacttgatggtattaggccagcaaattatgtatttggtctagtgttttgtaaaaagcatgtggccttggggtaattagtttgaatacttA-TTAAATT-TCCTCAAC-AATC--AAGC-TTCTAATA--TA-TA--GA--TGTA--TGTGC-ATCC-G--GATT-TTATCTTAATATGCAAAATGATTTAATTTACTTTT--T-GTTAAGT-TAGACTATGAA-GTA--A-------------C-A----CAATG-TAG-A-TAAatttatgaat
gi|19 : caaaataattgatcacttgatggtattaggccagcaattatgtatttggtctagtggttttgtaaaaagcatgtggcttggggtaattagtttgaaatacttA-TCAAA-T-TCCTCAAC-GATC--GGGC-Tattta
gi|11 : tcagggttcaaattcatggcctaatggtccagggcctaagtaaattatgggcttgggcttgtgatttgagaagtaaattattaattaatgaattacttAAAAT-TTCTCCAC-AATT--TGGC-TTGTAA-A--TATTA--------------CTCAGTCTGGTAGATT----TT---AC-TGC------A-----TACAC-TTT--T-GTGAAGT-TGTACTACAAA-ATA--A-------------C-A----CAATG-TTG-A-TAGC-----GAA
gi|16 : aatataaatcaatggtccggggtttgggccatagtgatttgttaagagcatgcgtccttggggctagttaatttaactagtaaaatataaAAT-TCCTCAAC-GATC--GGGC-TAATAA-A--TATTT--GA--TGCA--TATGT-GTgtaacagtgtacgctgtatgtgtatatgatacgtc
gi|22 : aattaattgtcctgaggtcgtgagccagcaagttatgagattgagctagtatgcttttcaagaacatgcgtctttggggctagttactattttaactagttgtgacGC-TAGTAA-A--TATTA--GA--TGTG--TGCGC-GTCTAG--AATT-TTATT---GCATGC------ACT---TCCAT-TC-----------T-TGTACTACAAA-GTA--AG------------A-GTACACAATA-TAG-A-TAAC-----GAATG-T-TTTTAA
gi|17 : GT-GTCCAG--GATT-TTATC---ACATGC------ACT---TCCAC-TTT--TAGTTTAG
gi|27 : cagggctcgaaataatcgatggtctgaggcatgagtttgggctagtgttgtaaaaagcatgcatcttttgggcaagtcaacttacatgtaactagtccacctctATT-TTATC---GCATGC------ACT---TCCAC-TTT--T-GTTCACT-TGTACTACAAA-GT---------------------------T--TAA-A-TAAC-----GAATG-T-TTTTAAGA
gi|7 : TTATC---ACTTGC------ACT---TCAAA-TTT--T-GTTGATT-TGTACTACAAA-ATA--A--------------------C-ATG-TAG--------------ATG-T-TTCTAAGAACAG-GCTATCTTCAGTAA--AA-TAAATGA-TT-GGCATTCC-TT--GAATGATTC-CTC-TACATTTTAAACA--AGG---C-ATAAGACACAGGAG-GAG-TTC-TTA-G-TTAGTATA--TATAAAAACAC-ACGTCT------TT------GGCAGCAAG-T-TTCTAT-GA--AT---GAACTGTCTAA-TTTGAAA
gi|21 : tt-TGTACTACGAA-GTA--ACATTATGTAATGTA-GA---CAACA-TAG-A-CAACTTCGCGAATG-T-CACATAGAACGA-ATTGTGTTAAGCGG--GG-TATACAA-TC-GCCATTCC-TC--GGATAATTC-tccagtgacattacactttcacagatgacacgaaaagtgaagatgacactattttctgaggttgatgaagtgaaaagcatgaatag
gi|13 : AT-----GAATG-T-TTCCAAGACTGA-GTTATCTTTAGTGA--TA-TATACGA-AC-AACATTAC-TT--GGATGATTC-TTT-TA-----CAC
gi|15 : TTA-ACATGCAA-TA-ACT----T-C-AATAAATCAATCAGATAT-------CCC-----CA--TG-ACA---------A-AATGAAT-----AGGTAAGAATGACTTCAAATTTATTTCAA---GAC--AAGC-AAAAA-ATC-TATATATTAA--TC---AGC-A-AT-AT---T-TC--CTTTGAGCTAGG----TCGAGCTC-T-ACTCGTGTCttttaacatgatgcaagctgtctaattttctatgctatcatcaactggtgatgattacactttcacatatgatccaaaaagtaaaaatgatgccaactatattcttaggttaagtgaaaatcatggacaag
gi|20 : tcTTA-A---GCAA-TATACTAAGAT-C-TATGTATCAATCA-AAAT-------CCG-GTAAGATTTT-ATATTTTCAC----------------------AAATGACTCT-GAATAATTTCAAG--AAT-TAAGC-AAAAA-ATATGGTT-AAGAA--TCGTAatccatag
gi|7 : AT-------CCA-GTGACA--TT-ACACTTTCA--CA-GATGA-CACGAAAAGTGAAGATGACACT-A--TTTTCTGAGGTTGAT-GAAGTGAAAAGCATG-AATA-
gi|3 : ttttatcacttgcacttcaaattttgttgatttgtactacaaaataacatgtagatgtttctaagaacaggctatcttcagtaaaataaatgattggcattccttgaatgattcctctacattttaaacaaggcataagacacaggaggagttcttagttagtatatataaaaacacacgtctttggcagcaagtttctatgaatgaactgtctaatttgaa--TT-ACATTTACAA-CA-A-TGA-T-----AGGTAAGAAT-ACTGC-GAATAATTTCACA--GAC-TAAGCAAAAAACATG-GATA-AAGAATTTCGTAAGCTA-AT-GAG--T-TTTGCTTGTAGGCGCG-----TGAG-------TTCGTGTCATAg
gi|24 : ggctcgaaatcaaacaatggcccgatgccagttaaattttgggtttggcgctgtaatgagcatgcacctcggtgctgagcaagatgtttacttgtggatcaaattgtcctcaatgattgggcctagtaaatattagactggtgcgtgtccagaattttacgcatgcacttccacttttgttaagtatgtctacaaagtaacgcaatatagataacgaatgttttttaagagtgagttactttaagtggagttatacacagaattcctcggggatgattccactacacaaacaagctttacaaatcaaaggagagttccgaatttagtatgtctccaagaacgcggcatctgacttctaaatggccatctagaattcataaaataaaaatgtctaatttTTACAC--A-AATGA-T-----GGGTAAGAATGACTTC-AATTTTTTTCAAT--AAC-TAGGCAAAAAACATG-GAT--AAGAA--TCGTAAG------------------CTTGTAGCCGGGAGGTTCGAG
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): GGCTCAAAATAACTGATGTCCCAAAGGTTTGGGGCTAGTAAATAATAGATTACGGCCAGTGCTTTGTAAAATGCATGTGCCCTAGGGGCTAGTTAATTTGAATACATGCCAAAATTCTTTATTGAATAATCAGGG
Unaligned ( gi|23 ): CATGTGTGTCCAGATTTTATTGGATGTTAAATATTTTCCTCAATTTACCTTTTTTTAAAGTTGTACTATGAAATAACATGTAATGTTAATAAATTCATGA
Unaligned ( gi|25 ): GAGCTCAAAATAAGCAATGGTCCAGGGCCAATAAATTATGGGATTGGGCTAGTGATTTGTAAATATTATATGTCCTTTGGGCTAGTTAGATTA
Unaligned ( gi|26 ): AGGGCTCGAAATAAATTATGGCCCAATCGTCCTGGGACAGTAAATTTTGGGCTTGGGCTAGTGATTTGTAAAGAGCAGGTA
Unaligned ( gi|28 ): CAGGGCTCGAAATAAACGATGGCCAGTAAATTTTGGGTTTGGGCTAGTG
Alignments
lowQualScore : 111111 222222222222222222222222 111111 1 1 222 55555555 111 1111 1111111 11111111 11111 2 11 222222222222 111
lowQualScore : 1 1 3 2 2 33 2 1 555 2 33 66 33 2 0 666 2 2 2 9999 999999 888 88888888 2 33 2 333 2 2 444 2 666666666666666666666666 2 2 2 999999 3 3 0 0 4 2 66 4 4 4 1 4 66 4 666666 888 77 1 44 5 5 5 5 0 000 555 5 5 11111111 5 2 999 1 5 77 000 77 66 33 6 6 3 99 33 5 888 888 0000 5 5 2 0 5 6666666 55 1 66 4 0 99999999 4 11111 2 5 3 5 1 888 55 0 6 0 0 44 77 3 6 333333333333 7 1 111 3
lowQualScore : . . . . . .. . . ... . .. .. .. . . ... . . . .... ...... ... ........ . .. . ... . . ... . ........................ . . . ...... . . . . . . .. . . . . . .. . ...... ... .. . .. . . . . . ... ... . . ........ . . ... . . .. ... .. .. .. . . . .. .. . ... ... .... . . . . . ....... .. . .. . . ........ . ..... . . . . . ... .. . . . . .. .. . . ............ . . ... .
lowQualScore : 0 0 8 9 9 99 7 9 444 9 99 88 77 5 1 777 4 4 4 4444 444444 222 55555555 4 22 4 444 4 1 444 5 555555555555555555555555 5 5 5 555555 1 1 5 7 0 7 11 4 4 4 0 4 11 4 111111 222 99 4 44 7 7 7 0 0 666 111 4 7 66666666 7 4 666 7 7 99 000 99 44 11 7 7 5 22 55 0 888 444 6666 0 0 0 7 7 2222222 22 4 11 4 8 66666666 4 11111 0 0 1 0 0 222 11 0 5 1 1 55 99 2 7 000000000000 3 0 888 2
consensus : GTTATCAAAAT-TCCTCAAC-GATC--GGGC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCCAG--GA-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-GTT--AAGT-TGTACTACGA---A-GTA-----AC--G--------------CAATA-TAG-AT-AAC-----GAATG-T-TTTTAAGAGCGA-GTTACTTTAAGTAG--AG-TATACAA-TC-GGAATTCC-TC--GGATGATTC-CACTA-----TAC--ACAAG--GT-ACAAATCAAAGGAG-GAG-TTC-CGA-A-TTAGTATG---TTCAAGAACGC-G-CGTCTG-ACTCT-T-A--GCGG-CGTCTAG-A-TTCATA-GA--AT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTTA-A---GCAA-TATACT----T-C-AATAAATCAATCA-ATAT-------CCC-GTGACA--TT-ACATTTNCAC-CA-AATGA-T-----AGGTAAGAATGAC-TTCGAA-TTNTTTCAAG--GAC-TAAGCGAAAAACATGGATA-AAGAA--TCGTAAGCTA-AT-GTG--T-TT--CTTGTAGCCGGGAGGTTCGAGCTC-T-ACTCGTGTCATAGC
Reference ( family-3406 ) : GTNATCAAAAT-TCCTCAAC-GATC--GGGC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCCAG--GA-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-GTT--AAGT-TGTACTACGA---A-GTA-----AC--G--------------CAATA-TAG-AT-AAC-----GAATG-T-TTTTAAGAGCGA-GTTACTTTAAGTAG--AG-TATACAA-TC-GGNATTCC-TC--GGATGATTC-CACTA-----TAC--ACAAG--GT-ACAAATCAAAGGAG-GAG-TTC-CGA-A-TTAGTATG---TTCAAGAACGC-G-CGTCTG-ACTCT-T----ACGG-CGTCTAG-A-TTCATA-GA--AT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTTA-A---GCAA-TATACT----T-C-AATAAATCAATCA-ATAT-------CCC-GTGACA--TT-ACATTTNCAC-CA-AATGA-T-----AGGTAAGAATGAC-TTCGAA-TTNTTTCAAG--GAC-TAAGC-AAAAACATGGATA-AAGAA--TCGTAAGCTA-AT-GTG--T-TT--CTTGTAGCCGGGAGGTTCGAGCTC-T-ACTCGTGTCATAGC
gi|1 : GTGATAAGAAT-TCCTCAAT-GATT--CGGC-TAGTAA---TAT-TA--GGATTGTGGGTGCGC-GTCCAG---A-TT-TTA-T----G-ATGC------ACT---TGC--------AT-TTT--T-GTT--TAGT-TGT-CTACAA---A-GTG-----CA--G--------------CAATG-TAGGAT-GAT-----G--TT-T-TTTTAAGA-TGA-GTTA-TTTAAGTAG--AG-TATACAACTA-GGAATT-C-TC--GAATGATTT-CA-TA-----AGC--ACAGG--GTGAC-AAT--AAGGAGAGAG-TT--CGA-ATTTAGTATG---TTCAA-AACGC-G-C-TCTG-ACTCT-T-----CGG-CGTCTAG-A-TTGATA-GAATAT---AA--TGTCTACATTTG-GACATTCTTCAA-GAT--AGAGATGTTATA---GCAA-TATACT----T-C-AAT-ATTAAAT---ATAT-------ATC-ATGA-------------------A-AATGA-T-----AGGTAGGAA-GAC-TTCAAA-TTATCTCAAG--GACTTAAGC-AAAAATG-GGAT--AAGAA--TAGTAAGCTA-ATAGTG--TATT--CCTGTAGACTGGAGGTT-GAGCTCGTAACTCGTGT-ATAGC
gi|10 : agggctcagaataacgatgccgatggatccggggcgagtcattttgggtttgggctagtgatttggtaagagcatgcgtcctcgggctagtatttatttTTATTAAATT-TCCTCAAC-AATC--AAGC-TTCT-AA--TATATA--GA--TGTA--TGTGC-ATCC-G--GA-TT-TTA-TCTTAATATGCAAAATGATTTAATTT--------ACTTTT--T-GTT--AAGT-TAGACTATGA---A-GTA-----AC--A--------------CAATG-TAG-AT-AA
gi|11 : caaaataattgatcacttgatggtattaggccagcaattatgtatttggtctagtggttttgtaaaaagcatgtggcttggggtaattagtttgaaatacAAAAT-TTCTCCAC-AATT--TGGC-TTGTAAA--TAT-TA--------------CTCAGTCTGGTAGA-TT-TTA-CT---GCATAC------ACT---T---------------T--T-GTG--AAGT-TGTACTACAA---A-ATA-----AC--A--------------CAATG-TTG-AT-AGC-----GAAattta
gi|12 : aatataaatcaatggtccggggtttgggccatagtgatttgttaagagcatgcgtccttggggctagttaatttaactagtaaaatataaGTTATCTAAAT-TCCTCAAT-GATC--GGGC-TAGTAAA--TAT-TA--TA--TGTG--TGCGT-GTCCAA--AA-GT-TTA-TC---GCATGC------ACT---TCC--------AC-GTT--T-GTT--GAGT-TGTACTACAA---A-GTA-----A------------------CAGCA-CAG-AT-AAT-----GAATG--------AGAGCGA-gtaacagtgtacgctgtatgtgtatatgatacgtc
gi|13 : gggctcaaaataatcgatggtctggggccggtaaattttgggatagggctagtgatttgtaaagagcatggggctagtcaatttaattaAT-----GAATG-T-TTCCAAGACTGA-GTTATCTTTAGTGA--TA-TATACGA-AC-AACATTAC-TT--GGATGATTC---TTT-----TAC--AC
gi|14 : GTTATCAAATT-TCATCAACCGATC--GG-C-TATTAA---TAT-TA--GA--TGTT--TGCAT-ATTCCG--GA-TT-T-A-TC---GCATGC------ACT---TCC--------AC-TTT--T-ACT--AAG--TGTATTttttaacatgatgcaagctgtctaattttctatgctatcatcaactggtgatgattacactttcacatatgatccaaaaagtaaaaatgatgccaactatattcttaggttaagtgaaaatcatggacaag
gi|15 : cagggctcgatgtaatcaacagcccgatgatttggggccagtaaattgggtttgggctagtgatttgtaaaagcatgcatccttgggctaattgatttcattaTTA-ACATGCAA-TA-ACT----T-C-AATAAATCAATCAGATAT-------CCC-----CA--TG-ACA---------A-AATGAAT-----AGGTAAGAATGAC-TTCAAATTTATTTCAA---GAC--AAGC-AAAAA-ATCTATATATTAA--TC---AGC-A-AT-AT---T-TC--CTTTGAGCTAGG----TCGAGCTC-T-ACTCGTGTCAcagt
gi|16 : tcGA-G-CTAGTATGCTTTTCAAGAACAT-G-CGTCTatccatag
gi|16 : aattaattgtcctgaggtcgtgagccagcaagttatgagattAAT-TCCTCAAC-GATC--GGGC-TAATAAA--TAT-TT--GA--TGCA--TATGT-GTttggggctagttactattttaactagttgtgacaattcctcaacgatcgggctaataaatatttgatgcatatgtgt
gi|17 : aattaattgtcctgaggtcgtgagccagcaagttatgagattgagctagtatgcttttcaagaacatgcgtctttggggctagttactattttaactagttgtgacGT-GTCCAG--GA-TT-TTA-TC---ACATGC------ACT---TCC--------AC-TTT--TAGTT--TAG
gi|19 : cagggctcgaaataatcgatggtctgaggcatgagtttgggctagtgttgtaaaaagcatgcatcttttgggcaagtcaacttacatgtaactagtccacctctTTATCAAA-T-TCCTCAAC-GATC--GGGC-T
gi|2 : tcagggttcaaattcatggcctaatggtccagggcctaagtaaattatgggcttgggcttgtgatttgagaagtaaattattaattaatgaattacATAAAAAT-TCCTCAAT-CATC--GGGC-TCGTAA---TAT-TA--GA--T-TG--TGCGC-ATCCAG--GAATT-TTAATT---GCATGC------A-T---TCC--------A--TTT--T-GTT--A-GT-TGTTATAC-A---A-GTA------C--G--------------TAATA-TAG--T-A-------GAAT--T-TTTTAGAGGTGA-GTTACTTTA-GTAG--AG-TAATCAA-GT-GGAATTCCCTC--GAATGATTC-CAC-A-----TAC--ACAAG--GT-G---ATCAAAGGAG-G-G-TTCACGA-A-TTAGTA-G---TTCAAGAACGC-G-CGTCTG-AATTT-------CGG-CGTCTAG-A-TTCA-A-GA--AT---AA--ATT-----TTTGCA-CATTC-TCAA-A-T-CAGAGAC-TTA-A---GCAAATATACT----T-C-AATAAAT-AATCA-GTAT-------CAC-GTGACA--TTTACATTT--AC-GAGAATGA-T-----AGGTA-GAATGAC-TTCAAA-TTTTTTCAAG--GAC-T---C-AAGAA------------AA--TCGTCAGCTACAT-GTAGTT-TT--CTTGTAGCCGGAAGGTTCGATCTC-T-A-TTGTGCCATAGC
gi|20 : agggcatcgaaataaacgatggccaaatggtaacgccataaattttggtttgggctaagtgatttgataaagagcatcgatactcggggctagacaacttattcttgtgaTTA-A---GCAA-TATACTAAGAT-C-TATGTATCAATCA-AAAT-------CCG-GTAAGATTTT-ATATTTTCAC----------------------AAATGAC-TCTGAA-TAATTTCAAG--AAT-TAAGCAAAAAATATGG-TT-AAGAA--TCGTA
gi|21 : -TGTACTACGA---A-GTA-----AC--ATTATGTAATGTAGACAACA-TAG-AC-AACTTCGCGAATG-T-CACATAGAACGA-ATTGTGTTAAGCGG--GG-TATACAA-TC-GCCATTCC-TC--GGATAATTC-
gi|22 : GC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCTAG--AA-TT-TTA-TT---GCATGC------ACT---TCC--------AT-TC-------------T-TGTACTACAA---A-GTAAGAGTAC--A--------------CAATA-TAG-AT-AAC-----GAATG-T-TTTTAA
gi|23 : --TGTGT-GTCCAG---A-TT-TTA-TT---GGATGTTAAAT-ATT---TTCCTCAATTTAC-CTT--T-TTTTAAAGT-TGTACTATGA---A-ATA-----ACATG--------------TAATG-TTA-AT-AA
gi|24 : caTTACAC--A-AATGA-T-----GGGTAAGAATGAC-TTCAAT-TTTTTTCAAT--AAC-TAGGCAAAAAACATGGAT--AAGAA--TCGTAAG------------------CTTGTAGCCGGGAGGTTCGAGattcatga
gi|27 : A-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-GTT--CACT-TGTACTACAA---A-GT----------------------------T--TAA-AT-AAC-----GAATG-T-TTTTAAGA
gi|3 : ATCAAATTGTCCTCAAT-GATT--GGGCCTAGTAAA--TAT-TA--GAC-TG-G--TGCGT-GTCCAG--AA-TT-TTA--C---GCATGC------ACT---TCC--------AC-TTT--T-GTT--AAGTATGT-CTACAA---A-GTA-----AC--G--------------CAATA-TAG-AT-AAC-----GAATGTT-TTTTAAGAGTGA-GTTACTTTAAGTGG--AGTTATACA---C-AGAATTCC-TCGGGGATGATTC-CACTA-----CACAAACAAGCTTT-ACAAATCAAAGGA--GAG-TTC-CGA-ATTTAGTATGTC-TCCAAGAACGCGG-CATCTG-ACTTC-TAA--ATGGCCATCTAGAA-TTCATA-AA--ATAAAAA--TGTCTAA-TTTTT-ACATTT-ACAACAAT-GATAGG---TA-A---G-A---ATACT----G-CGAATAA
gi|3 : ggctcgaaatcaaacaatggcccgatgccagttaaattttgggtttggcgctgtaatgagcatgcacctcggtgctgagcaagatgtttacttgtgg--TT-ACATTTACAA-CA-A-TGA-T-----AGGTAAGAAT-AC-TGCGAA-TAATTTCACA--GAC-TAAGCAAAAAACATGGATA-AAGAATTTCGTAAGCTA-AT-GAG--T-TTTGCTTGTAGGCGCG-----TGAG-------TTCGTGTCATAtttcacagactaagcaaaaaacatggataaagaatttcgtaagctaatgagttttgcttgtaggcgcgtgagttcgtgtcata
gi|4 : ggctcgaaatcaaacaatggcccgatgccagttaaattttgggtttggcgctgtaatgagcatgcacctcggtgctgagcaagatgtttacttgtggatcaaattgtcctcaatgattgggcctagtaaatattagactggtgcgtgtccagaattttacgcatgcacttccacttttgttaagtatgtctacaaagtaacgcaatatagataacgaatgttttttaagagtgagttactttaagtggagttatacacagaattcctcggggatgattccactacacaaacaagctttacaaatcaaaggagagttccgaatttagtatgtctccaagaacgcggcatctgacttctaaatggccatctagaattcataaaataaaaatgtctaatttGTGATCAAAAT-TCCTCAAT-AATC--GGGC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCCAG--AA-TTGTTA-TC---ACATGC------ACT---TCC--------AC-TTT--T-GTT--AAGT-TGTACTACAA---A-GTA-----AA--G--------------CAATA-TAG-AT-AAC-----GAATG-T-TTTTAAGAGTGA-GTTACTTTAAGTAG--AG-TATACAA-TC-GGAATTCT-TC--GAATGATTC-CACTA-----TAC--A-AAG--GT-ACAAATCAAAGGAG-GAG-TTT-CGA-A-TTAGTTTG---TTCAAGAACGC-G-CATCTG-ACTCT-TCAGCGCGG-CGTCCAG-A-TTCATA-GA--GT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTTA-A---GCAA-TATACT----T-C-AATAAATCAATCA-ATAT-------CCC-GTGACA--TT-ACATTTACAC-CA-AATGA-T-----AGGTAAAAATGGC-TTCAAT-TTTTTTCAAG--GAC-TAAGC-AAAAACATAGATA-AAGAA--TCGTAAGCTA-AT-GTG--T-TC--CTTGTAGCCGGGAGGTTCGAGCTC-T-ACTCGTGTCATAGC
gi|5 : GTGAT-AAAAT-GC-TCAAT-AATC--GG-C-TA-TAAAAATAT-TA--G---TGTG---GCGT-GTTCCG--AA-TT-T-A-T----GCA-GC------ACT----CC--------AC-TTT--T-GTT--AAGT-TGTACTACAA---AAGTA-----AA--G--------------CAATA-CAG-ATTAAC-----GAATG-T-TTT-AAGAGTGA-GTTACTGTAAGTAG--AG-GATACAA-TC-GGAATGC--TC--GAAAGAT-C-CACT------TAT--ACAAG--GT-ACAAATCAAAG-AG-GAG-TTC-CGG-A-TTAGTATG---TTCAAGA-CGC-GGCATCTGGACTCT-TCAGCGCGG-CGTCCAG-AGTTCAAA-GA--AT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTT--A---GC-A-TATACT----T-C-AATAAAACAATCA-ATATATATACACTCAATGATA---T-ACATATATACACACAATGA-T-----ca
gi|6 : tcagggctcgaaataaacgatggcagttaaatttgggtttgggcctaggatttataaagagcatcgagtcctcgggggcatagtaaaatttcatcttGTTATCAAAAT-CCCTCAAT-GATCACGGGC-TAGTACA--T-T-TACAGA--TGTG--TGCGC-GTCCAG--A--------------------------ACT---TCC--------AC-TTTTGT-GTT--TAGT-TGTACTACGAAGTA-GTA-----AC--A--------------CAATAGTAT-AT-AAA-----GAATA-CGTTTTAAGAGCGATTTTATGTCATATAGTTAG-CGT-TAA-TCTAGCATTCT-TC--GGATGAATCTCACTT-----CA---AC-AG--GTAAAAAACCACAGGAG-GAGCTTC-CGACA-TTATTATGT--TTCAAGAA-----------G-ATTCTGT----A-----------------ATA-A--------AA--TGTCTAC-TTTGCAACACAT-TCGA-ATTCCAGAGACGTTA-A---GC----ATATT----TAC-AATCTATCAATCA-AGA--------ATC-GTATCA--TT-ATATTTTCAC-TA-
gi|7 : cagggtgtagaataaacgaggcccaccgattggtcggcggccagtaaattttggttttgggctagtttgatttctaaagagcatgcgtcctgctaggtgaaataacta-TT-TTA-TC---ACTTGC------ACT---TCA--------AA-TTT--T-GTT--GATT-TGTACTACAA---A-ATA-----AC-------------------ATG-TAG-AT-------------G-T-TTCTAAGAACAG-GCTATCTTCAGTAA--AA-TAAATGA-TT-GGCATTCC-TT--GAATGATTC-CTCTACATTTTAA--ACAAG--GC-ATAAGACACAGGAG-GAG-TTC-TTA-G-TTAGTATA---TATAAAAACAC-A-CGTCT------T-T------GG-CAGCAAG-T-TTC-TATGA--AT---GAACTGTCTAA-TTTGAAA
gi|7 : AT-------CCA-GTGACA--TT-ACACTTTCA--CA-GATGA-CACGAAAAGTGAAGATGACACT---A-TTTTCTGAGGTTGAT-GAAGTGAAAAGCATGAATA-tccagtgacattacactttcacagatgacacgaaaagtgaagatgacactattttctgaggttgatgaagtgaaaagcatgaatag
gi|8 : ttttatcacttgcacttcaaattttgttgatttgtactacaaaataacatgtagatgtttctaagaacaggctatcttcagtaaaataaatgattggcattccttgaatgattcctctacattttaaacaaggcataagacacaggaggagttcttagttagtatatataaaaacacacgtctttggcagcaagtttctatgaatgaactgtctaatttgaaTTATTAAATT-TCCTCAAC-AATC--AAGC-TTCTAAA--TAT-TA--GA--TGTA--TGTGC-ATCCAG--GA-TT-TTA-TCTTAATATGCAAAATGATTTAATTT--------AC-TTT--T-GTT--AAGT-TAGACTATGA---A-GTA-----AC--A--------------CAATG-TAG-AT-AAg
gi|9 : ggctcaaaataattgatcacttgatggtattaggccagcaaattatgtatttggtctagtgttttgtaaaaagcatgtggccttggggtaattagtttgaatacGTTATCAAATT-TCATCAAC-GATC--GGGC-TATTAAA--TAT-TA--GA--TGTT--TGCAT-ATTCCG--GA-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-ACT--AAGT-TGTAATA-GT---G-GTA-----ACATG--------------AAAAA-CAT-AT-AA------AAATA-T-Tatttatgaat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GGCTCAAAATAACTGATGTCCCAAAGGTTTGGGGCTAGTAAATAATAGATTACGGCCAGTGCTTTGTAAAATGCATGTGCCCTAGGGGCTAGTTAATTTGAATACATGCCAAAATTCTTTATTGAATAATCAGGG
Unaligned ( gi|25 ): GAGCTCAAAATAAGCAATGGTCCAGGGCCAATAAATTATGGGATTGGGCTAGTGATTTGTAAATATTATATGTCCTTTGGGCTAGTTAGATTA
Unaligned ( gi|26 ): AGGGCTCGAAATAAATTATGGCCCAATCGTCCTGGGACAGTAAATTTTGGGCTTGGGCTAGTGATTTGTAAAGAGCAGGTA
Unaligned ( gi|28 ): CAGGGCTCGAAATAAACGATGGCCAGTAAATTTTGGGTTTGGGCTAGTG
Alignments
lowQualScore : 111111 222222222222222222222222 111111 1 1 222 333333333 111 1111 1111111 11 11111111 11111 1 11 222222222222 111
lowQualScore : 3 2 2 33 2 1 555 2 33 66 33 2 0 666 2 2 2 9999 999999 888 88888888 2 33 2 333 2 2 444 2 666666666666666666666666 2 2 2 999999 3 33 0 4 2 66 4 4 4 1 4 66 4 666666 888 77 1 44 5 5 5 5 0 000 555 5 5 5 666666666 5 1 2 999 1 5 77 000 77 66 33 6 6 3 99 33 5 888 888 0000 5 5 2 0 5 6666666 55 1 00 0 99999999 4 11111 2 5 3 5 1 888 55 3 44 0 11 77 3 6 333333333333 7 1 111 3
lowQualScore : . . . .. . . ... . .. .. .. . . ... . . . .... ...... ... ........ . .. . ... . . ... . ........................ . . . ...... . .. . . . .. . . . . . .. . ...... ... .. . .. . . . . . ... ... . . . ......... . . . ... . . .. ... .. .. .. . . . .. .. . ... ... .... . . . . . ....... .. . .. . ........ . ..... . . . . . ... .. . .. . .. .. . . ............ . . ... .
lowQualScore : 8 9 9 99 7 9 444 9 99 88 77 5 1 777 4 4 4 4444 444444 222 55555555 4 22 4 444 4 1 444 5 555555555555555555555555 5 5 5 555555 1 88 7 0 7 11 4 4 4 7 4 11 4 111111 222 99 4 44 7 7 7 0 0 666 111 4 7 7 444444444 7 4 1 666 7 7 99 000 99 44 11 7 7 5 22 55 0 888 444 6666 0 0 0 7 7 2222222 22 4 66 8 66666666 4 11111 0 0 1 0 0 222 11 6 66 1 55 99 2 7 000000000000 3 0 888 2
consensus : GTTATCAAAAT-TCCTCAAC-GATC--GGGC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCCAG--GA-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-GTT--AAGT-TGTACTACGA---A-GTA-----AC--G--------------CAATA-TAG-AT-AAC-----GAATGT-TTTT-AAGAGCGA-GTTACTTTAAGTAG--AGT-ATACAA-TC-GGAATTCC-TC--GGATGATTC-CACTA-----TAC--ACAAG--GT-ACAAATCAAAGGAG-GAG-TTC-CGA-A-TTAGTATG---TTCAAGAACGC-G-CGTCTG-AC-TCT-T-AGCG--G-CGTCTAG-A-TTCATA-GA--AT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTTA-A---GCAA-TATACT----T-C-AATAAATCAATCA-ATAT-------CCC-GTGACATT--ACATTTNCAC-CA-AATGA-T-----AGGTAAGAATGAC-TTCGAA-TTNTTTCAAG--GAC-TAAGCAAAAAACATGGATA-AAGAA--TCGTAAGCTA-AT-GTG--T-TT--CTTGTAGCCGGGAGGTTCGAGCTC-T-ACTCGTGTCATAGC
Reference ( family-3406 ) : GTTATCAAAAT-TCCTCAAC-GATC--GGGC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCCAG--GA-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-GTT--AAGT-TGTACTACGA---A-GTA-----AC--G--------------CAATA-TAG-AT-AAC-----GAATGT-TTTT-AAGAGCGA-GTTACTTTAAGTAG--AGT-ATACAA-TC-GGAATTCC-TC--GGATGATTC-CACTA-----TAC--ACAAG--GT-ACAAATCAAAGGAG-GAG-TTC-CGA-A-TTAGTATG---TTCAAGAACGC-G-CGTCTG-AC-TCT-T-AGCG--G-CGTCTAG-A-TTCATA-GA--AT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTTA-A---GCAA-TATACT----T-C-AATAAATCAATCA-ATAT-------CCC-GTGACATT--ACATTTNCAC-CA-AATGA-T-----AGGTAAGAATGAC-TTCGAA-TTNTTTCAAG--GAC-TAAGCGAAAAACATGGATA-AAGAA--TCGTAAGCTA-AT-GTG--T-TT--CTTGTAGCCGGGAGGTTCGAGCTC-T-ACTCGTGTCATAGC
gi|1 : GTGATAAGAAT-TCCTCAAT-GATT--CGGC-TAGTAA---TAT-TA--GGATTGTGGGTGCGC-GTCCAG---A-TT-TTA-T----G-ATGC------ACT---TGC--------AT-TTT--T-GTT--TAGT-TGT-CTACAA---A-GTG-----CA--G--------------CAATG-TAGGAT-GAT-----G--TTT-TTTT-AAGA-TGA-GTTA-TTTAAGTAG--AGT-ATACAACTA-GGAATT-C-TC--GAATGATTT-CA-TA-----AGC--ACAGG--GTGAC-AAT--AAGGAGAGAG-TT--CGA-ATTTAGTATG---TTCAA-AACGC-G-C-TCTG-AC-TCT-T---CG--G-CGTCTAG-A-TTGATA-GAATAT---AA--TGTCTACATTTG-GACATTCTTCAA-GAT--AGAGATGTTATA---GCAA-TATACT----T-C-AAT-ATTAAAT---ATAT-------ATC-ATGA------------------A-AATGA-T-----AGGTAGGAA-GAC-TTCAAA-TTATCTCAAG--GACTTAAGC-AAAAATG-GGAT--AAGAA--TAGTAAGCTA-ATAGTG--TATT--CCTGTAGACTGGAGGTT-GAGCTCGTAACTCGTGT-ATAGC
gi|10 : agggctcagaataacgatgccgatggatccggggcgagtcattttgggtttgggctagtgatttggtaagagcatgcgtcctcgggctagtatttatttTTATTAAATT-TCCTCAAC-AATC--AAGC-TTCT-AA--TATATA--GA--TGTA--TGTGC-ATCC-G--GA-TT-TTA-TCTTAATATGCAAAATGATTTAATTT--------ACTTTT--T-GTT--AAGT-TAGACTATGA---A-GTA-----AC--A--------------CAATG-TAG-AT-AA
gi|11 : caaaataattgatcacttgatggtattaggccagcaattatgtatttggtctagtggttttgtaaaaagcatgtggcttggggtaattagtttgaaatacAAAAT-TTCTCCAC-AATT--TGGC-TTGTAAA--TAT-TA--------------CTCAGTCTGGTAGA-TT-TTA-CT---GCATAC------ACT---T---------------T--T-GTG--AAGT-TGTACTACAA---A-ATA-----AC--A--------------CAATG-TTG-AT-AGC-----GAAattta
gi|12 : aatataaatcaatggtccggggtttgggccatagtgatttgttaagagcatgcgtccttggggctagttaatttaactagtaaaatataaGTTATCTAAAT-TCCTCAAT-GATC--GGGC-TAGTAAA--TAT-TA--TA--TGTG--TGCGT-GTCCAA--AA-GT-TTA-TC---GCATGC------ACT---TCC--------AC-GTT--T-GTT--GAGT-TGTACTACAA---A-GTA-----A------------------CAGCA-CAG-AT-AAT-----GAATG--------AGAGCGA-gtaacagtgtacgctgtatgtgtatatgatacgtc
gi|13 : gggctcaaaataatcgatggtctggggccggtaaattttgggatagggctagtgatttgtaaagagcatggggctagtcaatttaattaAT-----GAATGT-TTCC-AAGACTGA-GTTATCTTTAGTGA--TAT-ATACGA-AC-AACATTAC-TT--GGATGATTC---TTT-----TAC--AC
gi|14 : GTTATCAAATT-TCATCAACCGATC--GG-C-TATTAA---TAT-TA--GA--TGTT--TGCAT-ATTCCG--GA-TT-T-A-TC---GCATGC------ACT---TCC--------AC-TTT--T-ACT--AAG--TGTATTttttaacatgatgcaagctgtctaattttctatgctatcatcaactggtgatgattacactttcacatatgatccaaaaagtaaaaatgatgccaactatattcttaggttaagtgaaaatcatggacaag
gi|15 : cagggctcgatgtaatcaacagcccgatgatttggggccagtaaattgggtttgggctagtgatttgtaaaagcatgcatccttgggctaattgatttcattaTTA-ACATGCAA-TA-ACT----T-C-AATAAATCAATCAGATAT-------CCC-----CATG--ACA---------A-AATGAAT-----AGGTAAGAATGAC-TTCAAATTTATTTCAA---GAC--AAGCAAAAAATCT--ATATATTAA--TC---AGC-A-AT-AT---T-TC--CTTTGAGCTAGG----TCGAGCTC-T-ACTCGTGTCAcagt
gi|16 : tcGA-G-CTAGTATGCTTTTCAAGAACAT-G-CGTCTatccatag
gi|16 : aattaattgtcctgaggtcgtgagccagcaagttatgagattGTTGTGACAAT-TCCTCAAC-GATC--GGGC-TAATAAA--TAT-TT--GA--TGCA--TATGT-GTttggggctagttactattttaactagttgtgacaattcctcaacgatcgggctaataaatatttgatgcatatgtgt
gi|17 : aattaattgtcctgaggtcgtgagccagcaagttatgagattgagctagtatgcttttcaagaacatgcgtctttggggctagttactattttaactaGT-GTCCAG--GA-TT-TTA-TC---ACATGC------ACT---TCC--------AC-TTT--TAGTT--TAG
gi|19 : cagggctcgaaataatcgatggtctgaggcatgagtttgggctagtgttgtaaaaagcatgcatcttttgggcaagtcaacttacatgtaactagtccacctctTTATCAAA-T-TCCTCAAC-GATC--GGGC-T
gi|2 : tcagggttcaaattcatggcctaatggtccagggcctaagtaaattatgggcttgggcttgtgatttgagaagtaaattattaattaatgaattacATAAAAAT-TCCTCAAT-CATC--GGGC-TCGTAA---TAT-TA--GA--T-TG--TGCGC-ATCCAG--GAATT-TTAATT---GCATGC------A-T---TCC--------A--TTT--T-GTT--A-GT-TGTTATAC-A---A-GTA------C--G--------------TAATA-TAG--T-A-------GAAT-T-TTTT-AGAGGTGA-GTTACTTTA-GTAG--AGT-AATCAA-GT-GGAATTCCCTC--GAATGATTC-CAC-A-----TAC--ACAAG--GT-G---ATCAAAGGAG-G-G-TTCACGA-A-TTAGTA-G---TTCAAGAACGC-G-CGTCTG-AA-TTT-----CG--G-CGTCTAG-A-TTCA-A-GA--AT---AA--ATT-----TTTGCA-CATTC-TCAA-A-T-CAGAGAC-TTA-A---GCAAATATACT----T-C-AATAAAT-AATCA-GTAT-------CAC-GTGACATTT-ACATTT--AC-GAGAATGA-T-----AGGTA-GAATGAC-TTCAAA-TTTTTTCAAG--GAC-T----------CA-----A-GAAAA--TCGTCAGCTACAT-GTAGTT-TT--CTTGTAGCCGGAAGGTTCGATCTC-T-A-TTGTGCCATAGC
gi|20 : agggcatcgaaataaacgatggccaaatggtaacgccataaattttggtttgggctaagtgatttgataaagagcatcgatactcggggctagacaacttattcttgtgaTTA-A---GCAA-TATACTAAGAT-C-TATGTATCAATCA-AAAT-------CCG-GTAAGATTTTATATTTTCAC----------------------AAATGAC-TCTGAA-TAATTTCAAG--AAT-TAAGCAAAAAATATGG-TT-AAGAA--TCGTA
gi|21 : -TGTACTACGA---A-GTA-----AC--ATTATGTAATGTAGACAACA-TAG-AC-AACTTCGCGAATGT-CACA-TAGAACGA-ATTGTGTTAAGCGG--GGT-ATACAA-TC-GCCATTCC-TC--GGATAATTC-
gi|22 : GC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCTAG--AA-TT-TTA-TT---GCATGC------ACT---TCC--------AT-TC-------------T-TGTACTACAA---A-GTAAGAGTAC--A--------------CAATA-TAG-AT-AAC-----GAATGT-TTTT-AA
gi|23 : --TGTGT-GTCCAG---A-TT-TTA-TT---GGATGTTAAAT-ATT---TTCCTCAATTTAC-CTT--T-TTTTAAAGT-TGTACTATGA---A-ATA-----ACATG--------------TAATG-TTA-AT-AA
gi|24 : caTTACAC--A-AATGA-T-----GGGTAAGAATGAC-TTCAAT-TTTTTTCAAT--AAC-TAGGCAAAAAACATGGAT--AAGAA--TCGTAAG------------------CTTGTAGCCGGGAGGTTCGAGattcatga
gi|27 : A-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-GTT--CACT-TGTACTACAA---A-GT----------------------------T--TAA-AT-AAC-----GAATGT-TTTT-AAGA
gi|3 : ATCAAATTGTCCTCAAT-GATT--GGGCCTAGTAAA--TAT-TA--GAC-TG-G--TGCGT-GTCCAG--AA-TT-TTA--C---GCATGC------ACT---TCC--------AC-TTT--T-GTT--AAGTATGT-CTACAA---A-GTA-----AC--G--------------CAATA-TAG-AT-AAC-----GAATGT-TTTTTAAGAGTGA-GTTACTTTAAGTGG--AGTTATACA---C-AGAATTCC-TCGGGGATGATTC-CACTA-----CACAAACAAGCTTT-ACAAATCAAAGGA--GAG-TTC-CGA-ATTTAGTATGTC-TCCAAGAACGCGG-CATCTG-ACTTCT-A-AATG--GCCATCTAGAA-TTCATA-AA--ATAAAAA--TGTCTAA-TTTTT-ACATTT-ACAACAAT-GATAGG---TA-A---G-A---ATACT----G-CGAATAA
gi|3 : ggctcgaaatcaaacaatggcccgatgccagttaaattttgggtttggcgctgtaatgagcatgcacctcggtgctgagcaagatgtttacttgtggTT--ACATTTACAA-CA-A-TGA-T-----AGGTAAGAAT-AC-TGCGAA-TAATTTCACA--GAC-TAAGCAAAAAACATGGATA-AAGAATTTCGTAAGCTA-AT-GAG--T-TTTGCTTGTAGGCGCG-----TGAG-------TTCGTGTCATAtttcacagactaagcaaaaaacatggataaagaatttcgtaagctaatgagttttgcttgtaggcgcgtgagttcgtgtcata
gi|4 : ggctcgaaatcaaacaatggcccgatgccagttaaattttgggtttggcgctgtaatgagcatgcacctcggtgctgagcaagatgtttacttgtggatcaaattgtcctcaatgattgggcctagtaaatattagactggtgcgtgtccagaattttacgcatgcacttccacttttgttaagtatgtctacaaagtaacgcaatatagataacgaatgttttttaagagtgagttactttaagtggagttatacacagaattcctcggggatgattccactacacaaacaagctttacaaatcaaaggagagttccgaatttagtatgtctccaagaacgcggcatctgacttctaaatggccatctagaattcataaaataaaaatgtctaatttGTGATCAAAAT-TCCTCAAT-AATC--GGGC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCCAG--AA-TTGTTA-TC---ACATGC------ACT---TCC--------AC-TTT--T-GTT--AAGT-TGTACTACAA---A-GTA-----AA--G--------------CAATA-TAG-AT-AAC-----GAATGT-TTTT-AAGAGTGA-GTTACTTTAAGTAG--AGT-ATACAA-TC-GGAATTCT-TC--GAATGATTC-CACTA-----TAC--A-AAG--GT-ACAAATCAAAGGAG-GAG-TTT-CGA-A-TTAGTTTG---TTCAAGAACGC-G-CATCTG-AC-TCT-TCAGCGCGG-CGTCCAG-A-TTCATA-GA--GT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTTA-A---GCAA-TATACT----T-C-AATAAATCAATCA-ATAT-------CCC-GTGACATT--ACATTTACAC-CA-AATGA-T-----AGGTAAAAATGGC-TTCAAT-TTTTTTCAAG--GAC-TAAGC-AAAAACATAGATA-AAGAA--TCGTAAGCTA-AT-GTG--T-TC--CTTGTAGCCGGGAGGTTCGAGCTC-T-ACTCGTGTCATAGC
gi|5 : AAAAT-GC-TCAAT-AATC--GG-C-TA-TAAAAATAT-TA--G---TGTG---GCGT-GTTCCG--AA-TT-T-A-T----GCA-GC------ACT----CC--------AC-TTT--T-GTT--AAGT-TGTACTACAA---AAGTA-----AA--G--------------CAATA-CAG-ATTAAC-----GAATGT-TTT--AAGAGTGA-GTTACTGTAAGTAG--AGG-ATACAA-TC-GGAATGC--TC--GAAAGAT-C-CACT------TAT--ACAAG--GT-ACAAATCAAAG-AG-GAG-TTC-CGG-A-TTAGTATG---TTCAAGA-CGC-GGCATCTGGAC-TCT-TCAGCGCGG-CGTCCAG-AGTTCAAA-GA--AT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTT--A---GC-A-TATACT----T-C-AATAAAACAATCA-ATATATATACACTCAATGATA-T--ACATATATACACACAATGA-T-----ca
gi|6 : tcagggctcgaaataaacgatggcagttaaatttgggtttgggcctaggatttataaagagcatcgagtcctcgggggcatagtaaaatttcatcttgtgatGTTATCAAAAT-CCCTCAAT-GATCACGGGC-TAGTACA--T-T-TACAGA--TGTG--TGCGC-GTCCAG--A--------------------------ACT---TCC--------AC-TTTTGT-GTT--TAGT-TGTACTACGAAGTA-GTA-----AC--A--------------CAATAGTAT-AT-AAA-----GAATACGTTTT-AAGAGCGATTTTATGTCATATAGTTAGC-GT-TAA-TCTAGCATTCT-TC--GGATGAATCTCACTT-----CA---AC-AG--GTAAAAAACCACAGGAG-GAGCTTC-CGACA-TTATTATGT--TTCAAGAA-----------G-AT-TCTGT-A--------------------ATA-A--------AA--TGTCTAC-TTTGCAACACAT-TCGA-ATTCCAGAGACGTTA-A---GC----ATATT----TAC-AATCTATCAATCA-AGA--------ATC-GTATCATT--ATATTTTCAC-TA-
gi|7 : cagggtgtagaataaacgaggcccaccgattggtcggcggccagtaaattttggttttgggctagtttgatttctaaagagcatgcgtcctgctaggtgaaataacta-TT-TTA-TC---ACTTGC------ACT---TCA--------AA-TTT--T-GTT--GATT-TGTACTACAA---A-ATA-----AC-------------------ATG-TAG-AT-------------GT-TTCT-AAGAACAG-GCTATCTTCAGTAA--AAT-AAATGA-TT-GGCATTCC-TT--GAATGATTC-CTCTACATTTTAA--ACAAG--GC-ATAAGACACAGGAG-GAG-TTC-TTA-G-TTAGTATA---TATAAAAACAC-A-CGTCT-------T-T-GGCA--G-CA---AG-T-TTC-TATGA--AT---GAACTGTCTAA-TTTGAAA
gi|7 : AT-------CCA-GTGACATT--ACACTTTCA--CA-GATGA-CACGAAAAGTGAAGATGACACT---A-TTTTCTGAGGTTGAT-GAAGTGAAAAGCATGAATA-tccagtgacattacactttcacagatgacacgaaaagtgaagatgacactattttctgaggttgatgaagtgaaaagcatgaatag
gi|8 : ttttatcacttgcacttcaaattttgttgatttgtactacaaaataacatgtagatgtttctaagaacaggctatcttcagtaaaataaatgattggcattccttgaatgattcctctacattttaaacaaggcataagacacaggaggagttcttagttagtatatataaaaacacacgtctttggcagcaagtttctatgaatgaactgtctaatttgaaTTATTAAATT-TCCTCAAC-AATC--AAGC-TTCTAAA--TAT-TA--GA--TGTA--TGTGC-ATCCAG--GA-TT-TTA-TCTTAATATGCAAAATGATTTAATTT--------AC-TTT--T-GTT--AAGT-TAGACTATGA---A-GTA-----AC--A--------------CAATG-TAG-AT-AAg
gi|9 : ggctcaaaataattgatcacttgatggtattaggccagcaaattatgtatttggtctagtgttttgtaaaaagcatgtggccttggggtaattagtttgaatacGTTATCAAATT-TCATCAAC-GATC--GGGC-TATTAAA--TAT-TA--GA--TGTT--TGCAT-ATTCCG--GA-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-ACT--AAGT-TGTAATA-GT---G-GTA-----ACATG--------------AAAAA-CAT-AT-AA------AAATAT-Tatttatgaat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GGCTCAAAATAACTGATGTCCCAAAGGTTTGGGGCTAGTAAATAATAGATTACGGCCAGTGCTTTGTAAAATGCATGTGCCCTAGGGGCTAGTTAATTTGAATACATGCCAAAATTCTTTATTGAATAATCAGGG
Unaligned ( gi|25 ): GAGCTCAAAATAAGCAATGGTCCAGGGCCAATAAATTATGGGATTGGGCTAGTGATTTGTAAATATTATATGTCCTTTGGGCTAGTTAGATTA
Unaligned ( gi|26 ): AGGGCTCGAAATAAATTATGGCCCAATCGTCCTGGGACAGTAAATTTTGGGCTTGGGCTAGTGATTTGTAAAGAGCAGGTA
Unaligned ( gi|28 ): CAGGGCTCGAAATAAACGATGGCCAGTAAATTTTGGGTTTGGGCTAGTG
Alignments
lowQualScore : 111111 222222222222222222222222 111111 1 1 222 333333333 111 1111 1111111 11 11111111 11111 11 222222222222 111
lowQualScore : 3 2 2 33 2 1 555 2 33 66 33 2 0 666 2 2 2 9999 999999 888 88888888 2 33 2 333 2 2 444 2 666666666666666666666666 2 2 2 999999 3 33 0 4 2 66 4 4 4 1 4 66 4 666666 888 77 1 44 5 5 5 5 0 000 555 5 5 5 666666666 5 1 2 999 1 5 77 000 77 66 33 6 6 3 99 33 5 888 888 0000 5 5 2 0 5 6666666 55 1 00 0 99999999 4 11111 2 5 3 5 1 888 55 22 66 0 44 77 3 6 333333333333 7 1 111 3
lowQualScore : . . . .. . . ... . .. .. .. . . ... . . . .... ...... ... ........ . .. . ... . . ... . ........................ . . . ...... . .. . . . .. . . . . . .. . ...... ... .. . .. . . . . . ... ... . . . ......... . . . ... . . .. ... .. .. .. . . . .. .. . ... ... .... . . . . . ....... .. . .. . ........ . ..... . . . . . ... .. .. .. . .. .. . . ............ . . ... .
lowQualScore : 8 9 9 99 7 9 444 9 99 88 77 5 1 777 4 4 4 4444 444444 222 55555555 4 22 4 444 4 1 444 5 555555555555555555555555 5 5 5 555555 1 88 7 0 7 11 4 4 4 7 4 11 4 111111 222 99 4 44 7 7 7 0 0 666 111 4 7 7 444444444 7 4 1 666 7 7 99 000 99 44 11 7 7 5 22 55 0 888 444 6666 0 0 0 7 7 2222222 22 4 66 8 66666666 4 11111 0 0 1 0 0 222 11 22 44 1 55 99 2 7 000000000000 3 0 888 2
consensus : GTTATCAAAAT-TCCTCAAC-GATC--GGGC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCCAG--GA-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-GTT--AAGT-TGTACTACGA---A-GTA-----AC--G--------------CAATA-TAG-AT-AAC-----GAATGT-TTTT-AAGAGCGA-GTTACTTTAAGTAG--AGT-ATACAA-TC-GGAATTCC-TC--GGATGATTC-CACTA-----TAC--ACAAG--GT-ACAAATCAAAGGAG-GAG-TTC-CGA-A-TTAGTATG---TTCAAGAACGC-G-CGTCTG-AC-TCT-T-AGCG--G-CGTCTAG-A-TTCATA-GA--AT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTTA-A---GCAA-TATACT----T-C-AATAAATCAATCA-ATAT-------CCC-GTGACATT--ACATTTNCAC-CA-AATGA-T-----AGGTAAGAATGAC-TTCGAA-TTNTTTCAAG--GAC-TAAGCAAAAAACAT-GGATA-AAGAA--TCGTAAGCTA-AT-GTG--T-TT--CTTGTAGCCGGGAGGTTCGAGCTC-T-ACTCGTGTCATAGC
Reference ( family-3406 ) : GTTATCAAAAT-TCCTCAAC-GATC--GGGC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCCAG--GA-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-GTT--AAGT-TGTACTACGA---A-GTA-----AC--G--------------CAATA-TAG-AT-AAC-----GAATGT-TTTT-AAGAGCGA-GTTACTTTAAGTAG--AGT-ATACAA-TC-GGAATTCC-TC--GGATGATTC-CACTA-----TAC--ACAAG--GT-ACAAATCAAAGGAG-GAG-TTC-CGA-A-TTAGTATG---TTCAAGAACGC-G-CGTCTG-AC-TCT-T-AGCG--G-CGTCTAG-A-TTCATA-GA--AT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTTA-A---GCAA-TATACT----T-C-AATAAATCAATCA-ATAT-------CCC-GTGACATT--ACATTTNCAC-CA-AATGA-T-----AGGTAAGAATGAC-TTCGAA-TTNTTTCAAG--GAC-TAAGCAAAAAACAT-GGATA-AAGAA--TCGTAAGCTA-AT-GTG--T-TT--CTTGTAGCCGGGAGGTTCGAGCTC-T-ACTCGTGTCATAGC
gi|1 : GTGATAAGAAT-TCCTCAAT-GATT--CGGC-TAGTAA---TAT-TA--GGATTGTGGGTGCGC-GTCCAG---A-TT-TTA-T----G-ATGC------ACT---TGC--------AT-TTT--T-GTT--TAGT-TGT-CTACAA---A-GTG-----CA--G--------------CAATG-TAGGAT-GAT-----G--TTT-TTTT-AAGA-TGA-GTTA-TTTAAGTAG--AGT-ATACAACTA-GGAATT-C-TC--GAATGATTT-CA-TA-----AGC--ACAGG--GTGAC-AAT--AAGGAGAGAG-TT--CGA-ATTTAGTATG---TTCAA-AACGC-G-C-TCTG-AC-TCT-T---CG--G-CGTCTAG-A-TTGATA-GAATAT---AA--TGTCTACATTTG-GACATTCTTCAA-GAT--AGAGATGTTATA---GCAA-TATACT----T-C-AAT-ATTAAAT---ATAT-------ATC-ATGA------------------A-AATGA-T-----AGGTAGGAA-GAC-TTCAAA-TTATCTCAAG--GACTTAAGCAAAA---ATGGGAT--AAGAA--TAGTAAGCTA-ATAGTG--TATT--CCTGTAGACTGGAGGTT-GAGCTCGTAACTCGTGT-ATAGC
gi|10 : agggctcagaataacgatgccgatggatccggggcgagtcattttgggtttgggctagtgatttggtaagagcatgcgtcctcgggctagtatttatttTTATTAAATT-TCCTCAAC-AATC--AAGC-TTCT-AA--TATATA--GA--TGTA--TGTGC-ATCC-G--GA-TT-TTA-TCTTAATATGCAAAATGATTTAATTT--------ACTTTT--T-GTT--AAGT-TAGACTATGA---A-GTA-----AC--A--------------CAATG-TAG-AT-AA
gi|11 : caaaataattgatcacttgatggtattaggccagcaattatgtatttggtctagtggttttgtaaaaagcatgtggcttggggtaattagtttgaaatacAAAAT-TTCTCCAC-AATT--TGGC-TTGTAAA--TAT-TA--------------CTCAGTCTGGTAGA-TT-TTA-CT---GCATAC------ACT---T---------------T--T-GTG--AAGT-TGTACTACAA---A-ATA-----AC--A--------------CAATG-TTG-AT-AGC-----GAAattta
gi|12 : aatataaatcaatggtccggggtttgggccatagtgatttgttaagagcatgcgtccttggggctagttaatttaactagtaaaatataaGTTATCTAAAT-TCCTCAAT-GATC--GGGC-TAGTAAA--TAT-TA--TA--TGTG--TGCGT-GTCCAA--AA-GT-TTA-TC---GCATGC------ACT---TCC--------AC-GTT--T-GTT--GAGT-TGTACTACAA---A-GTA-----A------------------CAGCA-CAG-AT-AAT-----GAATG--------AGAGCGA-gtaacagtgtacgctgtatgtgtatatgatacgtc
gi|13 : gggctcaaaataatcgatggtctggggccggtaaattttgggatagggctagtgatttgtaaagagcatggggctagtcaatttaattaAT-----GAATGT-TTCC-AAGACTGA-GTTATCTTTAGTGA--TAT-ATACGA-AC-AACATTAC-TT--GGATGATTC---TTT-----TAC--AC
gi|14 : GTTATCAAATT-TCATCAACCGATC--GG-C-TATTAA---TAT-TA--GA--TGTT--TGCAT-ATTCCG--GA-TT-T-A-TC---GCATGC------ACT---TCC--------AC-TTT--T-ACT--AAG--TGTATTttttaacatgatgcaagctgtctaattttctatgctatcatcaactggtgatgattacactttcacatatgatccaaaaagtaaaaatgatgccaactatattcttaggttaagtgaaaatcatggacaag
gi|15 : cagggctcgatgtaatcaacagcccgatgatttggggccagtaaattgggtttgggctagtgatttgtaaaagcatgcatccttgggctaattgatttcattaTTA-ACATGCAA-TA-ACT----T-C-AATAAATCAATCAGATAT-------CCC-----CATG--ACA---------A-AATGAAT-----AGGTAAGAATGAC-TTCAAATTTATTTCAA---GAC--AAGCAAAAAATCT---ATATATTAA--TC---AGC-A-AT-AT---T-TC--CTTTGAGCTAGG----TCGAGCTC-T-ACTCGTGTCAcagt
gi|16 : tcGA-G-CTAGTATGCTTTTCAAGAACAT-G-CGTCTatccatag
gi|16 : aattaattgtcctgaggtcgtgagccagcaagttatgagattGTTGTGACAAT-TCCTCAAC-GATC--GGGC-TAATAAA--TAT-TT--GA--TGCA--TATGT-GTttggggctagttactattttaactagttgtgacaattcctcaacgatcgggctaataaatatttgatgcatatgtgt
gi|17 : aattaattgtcctgaggtcgtgagccagcaagttatgagattgagctagtatgcttttcaagaacatgcgtctttggggctagttactattttaactaGT-GTCCAG--GA-TT-TTA-TC---ACATGC------ACT---TCC--------AC-TTT--TAGTT--TAG
gi|19 : cagggctcgaaataatcgatggtctgaggcatgagtttgggctagtgttgtaaaaagcatgcatcttttgggcaagtcaacttacatgtaactagtccacctctTTATCAAA-T-TCCTCAAC-GATC--GGGC-T
gi|2 : tcagggttcaaattcatggcctaatggtccagggcctaagtaaattatgggcttgggcttgtgatttgagaagtaaattattaattaatgaattacATAAAAAT-TCCTCAAT-CATC--GGGC-TCGTAA---TAT-TA--GA--T-TG--TGCGC-ATCCAG--GAATT-TTAATT---GCATGC------A-T---TCC--------A--TTT--T-GTT--A-GT-TGTTATAC-A---A-GTA------C--G--------------TAATA-TAG--T-A-------GAAT-T-TTTT-AGAGGTGA-GTTACTTTA-GTAG--AGT-AATCAA-GT-GGAATTCCCTC--GAATGATTC-CAC-A-----TAC--ACAAG--GT-G---ATCAAAGGAG-G-G-TTCACGA-A-TTAGTA-G---TTCAAGAACGC-G-CGTCTG-AA-TTT-----CG--G-CGTCTAG-A-TTCA-A-GA--AT---AA--ATT-----TTTGCA-CATTC-TCAA-A-T-CAGAGAC-TTA-A---GCAAATATACT----T-C-AATAAAT-AATCA-GTAT-------CAC-GTGACATTT-ACATTT--AC-GAGAATGA-T-----AGGTA-GAATGAC-TTCAAA-TTTTTTCAAG--GAC-T---CAAGAA--------------AA--TCGTCAGCTACAT-GTAGTT-TT--CTTGTAGCCGGAAGGTTCGATCTC-T-A-TTGTGCCATAGC
gi|20 : agggcatcgaaataaacgatggccaaatggtaacgccataaattttggtttgggctaagtgatttgataaagagcatcgatactcggggctagacaacttattcttgtgaTTA-A---GCAA-TATACTAAGAT-C-TATGTATCAATCA-AAAT-------CCG-GTAAGATTTTATATTTTCAC----------------------AAATGAC-TCTGAA-TAATTTCAAG--AAT-TAAGCAAAAAATAT-GG-TT-AAGAA--TCGTA
gi|21 : -TGTACTACGA---A-GTA-----AC--ATTATGTAATGTAGACAACA-TAG-AC-AACTTCGCGAATGT-CACA-TAGAACGA-ATTGTGTTAAGCGG--GGT-ATACAA-TC-GCCATTCC-TC--GGATAATTC-
gi|22 : GC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCTAG--AA-TT-TTA-TT---GCATGC------ACT---TCC--------AT-TC-------------T-TGTACTACAA---A-GTAAGAGTAC--A--------------CAATA-TAG-AT-AAC-----GAATGT-TTTT-AA
gi|23 : --TGTGT-GTCCAG---A-TT-TTA-TT---GGATGTTAAAT-ATT---TTCCTCAATTTAC-CTT--T-TTTTAAAGT-TGTACTATGA---A-ATA-----ACATG--------------TAATG-TTA-AT-AA
gi|24 : caTTACAC--A-AATGA-T-----GGGTAAGAATGAC-TTCAAT-TTTTTTCAAT--AAC-TAGGCAAAAAACAT-GGAT--AAGAA--TCGTAAG------------------CTTGTAGCCGGGAGGTTCGAGattcatga
gi|27 : A-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-GTT--CACT-TGTACTACAA---A-GT----------------------------T--TAA-AT-AAC-----GAATGT-TTTT-AAGA
gi|3 : ATCAAATTGTCCTCAAT-GATT--GGGCCTAGTAAA--TAT-TA--GAC-TG-G--TGCGT-GTCCAG--AA-TT-TTA--C---GCATGC------ACT---TCC--------AC-TTT--T-GTT--AAGTATGT-CTACAA---A-GTA-----AC--G--------------CAATA-TAG-AT-AAC-----GAATGT-TTTTTAAGAGTGA-GTTACTTTAAGTGG--AGTTATACA---C-AGAATTCC-TCGGGGATGATTC-CACTA-----CACAAACAAGCTTT-ACAAATCAAAGGA--GAG-TTC-CGA-ATTTAGTATGTC-TCCAAGAACGCGG-CATCTG-ACTTCT-A-AATG--GCCATCTAGAA-TTCATA-AA--ATAAAAA--TGTCTAA-TTTTT-ACATTT-ACAACAAT-GATAGG---TA-A---G-A---ATACT----G-CGAATAA
gi|3 : ggctcgaaatcaaacaatggcccgatgccagttaaattttgggtttggcgctgtaatgagcatgcacctcggtgctgagcaagatgtttacttgtggTT--ACATTTACAA-CA-A-TGA-T-----AGGTAAGAAT-AC-TGCGAA-TAATTTCACA--GAC-TAAGCAAAAAACAT-GGATA-AAGAATTTCGTAAGCTA-AT-GAG--T-TTTGCTTGTAGGCGCG-----TGAG-------TTCGTGTCATAtttcacagactaagcaaaaaacatggataaagaatttcgtaagctaatgagttttgcttgtaggcgcgtgagttcgtgtcata
gi|4 : ggctcgaaatcaaacaatggcccgatgccagttaaattttgggtttggcgctgtaatgagcatgcacctcggtgctgagcaagatgtttacttgtggatcaaattgtcctcaatgattgggcctagtaaatattagactggtgcgtgtccagaattttacgcatgcacttccacttttgttaagtatgtctacaaagtaacgcaatatagataacgaatgttttttaagagtgagttactttaagtggagttatacacagaattcctcggggatgattccactacacaaacaagctttacaaatcaaaggagagttccgaatttagtatgtctccaagaacgcggcatctgacttctaaatggccatctagaattcataaaataaaaatgtctaatttGTGATCAAAAT-TCCTCAAT-AATC--GGGC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCCAG--AA-TTGTTA-TC---ACATGC------ACT---TCC--------AC-TTT--T-GTT--AAGT-TGTACTACAA---A-GTA-----AA--G--------------CAATA-TAG-AT-AAC-----GAATGT-TTTT-AAGAGTGA-GTTACTTTAAGTAG--AGT-ATACAA-TC-GGAATTCT-TC--GAATGATTC-CACTA-----TAC--A-AAG--GT-ACAAATCAAAGGAG-GAG-TTT-CGA-A-TTAGTTTG---TTCAAGAACGC-G-CATCTG-AC-TCT-TCAGCGCGG-CGTCCAG-A-TTCATA-GA--GT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTTA-A---GCAA-TATACT----T-C-AATAAATCAATCA-ATAT-------CCC-GTGACATT--ACATTTACAC-CA-AATGA-T-----AGGTAAAAATGGC-TTCAAT-TTTTTTCAAG--GAC-TAAGC-AAAAACAT-AGATA-AAGAA--TCGTAAGCTA-AT-GTG--T-TC--CTTGTAGCCGGGAGGTTCGAGCTC-T-ACTCGTGTCATAGC
gi|5 : AAAAT-GC-TCAAT-AATC--GG-C-TA-TAAAAATAT-TA--G---TGTG---GCGT-GTTCCG--AA-TT-T-A-T----GCA-GC------ACT----CC--------AC-TTT--T-GTT--AAGT-TGTACTACAA---AAGTA-----AA--G--------------CAATA-CAG-ATTAAC-----GAATGT-TTT--AAGAGTGA-GTTACTGTAAGTAG--AGG-ATACAA-TC-GGAATGC--TC--GAAAGAT-C-CACT------TAT--ACAAG--GT-ACAAATCAAAG-AG-GAG-TTC-CGG-A-TTAGTATG---TTCAAGA-CGC-GGCATCTGGAC-TCT-TCAGCGCGG-CGTCCAG-AGTTCAAA-GA--AT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTT--A---GC-A-TATACT----T-C-AATAAAACAATCA-ATATATATACACTCAATGATA-T--ACATATATACACACAATGA-T-----ca
gi|6 : tcagggctcgaaataaacgatggcagttaaatttgggtttgggcctaggatttataaagagcatcgagtcctcgggggcatagtaaaatttcatcttgtgatGTTATCAAAAT-CCCTCAAT-GATCACGGGC-TAGTACA--T-T-TACAGA--TGTG--TGCGC-GTCCAG--A--------------------------ACT---TCC--------AC-TTTTGT-GTT--TAGT-TGTACTACGAAGTA-GTA-----AC--A--------------CAATAGTAT-AT-AAA-----GAATACGTTTT-AAGAGCGATTTTATGTCATATAGTTAGC-GT-TAA-TCTAGCATTCT-TC--GGATGAATCTCACTT-----CA---AC-AG--GTAAAAAACCACAGGAG-GAGCTTC-CGACA-TTATTATGT--TTCAAGAA-----------G-AT-TCTGT-A--------------------ATA-A--------AA--TGTCTAC-TTTGCAACACAT-TCGA-ATTCCAGAGACGTTA-A---GC----ATATT----TAC-AATCTATCAATCA-AGA--------ATC-GTATCATT--ATATTTTCAC-TA-
gi|7 : cagggtgtagaataaacgaggcccaccgattggtcggcggccagtaaattttggttttgggctagtttgatttctaaagagcatgcgtcctgctaggtgaaataacta-TT-TTA-TC---ACTTGC------ACT---TCA--------AA-TTT--T-GTT--GATT-TGTACTACAA---A-ATA-----AC-------------------ATG-TAG-AT-------------GT-TTCT-AAGAACAG-GCTATCTTCAGTAA--AAT-AAATGA-TT-GGCATTCC-TT--GAATGATTC-CTCTACATTTTAA--ACAAG--GC-ATAAGACACAGGAG-GAG-TTC-TTA-G-TTAGTATA---TATAAAAACAC-A-CGTCT-------T-T-GGCA--G-CA---AG-T-TTC-TATGA--AT---GAACTGTCTAA-TTTGAAA
gi|7 : AT-------CCA-GTGACATT--ACACTTTCA--CA-GATGA-CACGAAAAGTGAAGATGACACT---A-TTTTCTGAGGTTGAT-GAAGTGAAAAGCAT-GAATA-tccagtgacattacactttcacagatgacacgaaaagtgaagatgacactattttctgaggttgatgaagtgaaaagcatgaatag
gi|8 : ttttatcacttgcacttcaaattttgttgatttgtactacaaaataacatgtagatgtttctaagaacaggctatcttcagtaaaataaatgattggcattccttgaatgattcctctacattttaaacaaggcataagacacaggaggagttcttagttagtatatataaaaacacacgtctttggcagcaagtttctatgaatgaactgtctaatttgaaTTATTAAATT-TCCTCAAC-AATC--AAGC-TTCTAAA--TAT-TA--GA--TGTA--TGTGC-ATCCAG--GA-TT-TTA-TCTTAATATGCAAAATGATTTAATTT--------AC-TTT--T-GTT--AAGT-TAGACTATGA---A-GTA-----AC--A--------------CAATG-TAG-AT-AAg
gi|9 : ggctcaaaataattgatcacttgatggtattaggccagcaaattatgtatttggtctagtgttttgtaaaaagcatgtggccttggggtaattagtttgaatacGTTATCAAATT-TCATCAAC-GATC--GGGC-TATTAAA--TAT-TA--GA--TGTT--TGCAT-ATTCCG--GA-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-ACT--AAGT-TGTAATA-GT---G-GTA-----ACATG--------------AAAAA-CAT-AT-AA------AAATAT-Tatttatgaat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GGCTCAAAATAACTGATGTCCCAAAGGTTTGGGGCTAGTAAATAATAGATTACGGCCAGTGCTTTGTAAAATGCATGTGCCCTAGGGGCTAGTTAATTTGAATACATGCCAAAATTCTTTATTGAATAATCAGGG
Unaligned ( gi|25 ): GAGCTCAAAATAAGCAATGGTCCAGGGCCAATAAATTATGGGATTGGGCTAGTGATTTGTAAATATTATATGTCCTTTGGGCTAGTTAGATTA
Unaligned ( gi|26 ): AGGGCTCGAAATAAATTATGGCCCAATCGTCCTGGGACAGTAAATTTTGGGCTTGGGCTAGTGATTTGTAAAGAGCAGGTA
Unaligned ( gi|28 ): CAGGGCTCGAAATAAACGATGGCCAGTAAATTTTGGGTTTGGGCTAGTG
Alignments
lowQualScore : 111111 222222222222222222222222 111111 1 1 222 333333333 111 1111 1111111 11 11111111 11111 11 222222222222 111
lowQualScore : 3 2 2 33 2 1 555 2 33 66 33 2 0 666 2 2 2 9999 999999 888 88888888 2 33 2 333 2 2 444 2 666666666666666666666666 2 2 2 999999 3 33 0 4 2 66 4 4 4 1 4 66 4 666666 888 77 1 44 5 5 5 5 0 000 555 5 5 5 666666666 5 1 2 999 1 5 77 000 77 66 33 6 6 3 99 33 5 888 888 0000 5 5 2 0 5 6666666 55 1 00 0 99999999 4 11111 2 5 3 5 1 888 55 22 66 0 44 77 3 6 333333333333 7 1 111 3
lowQualScore : . . . .. . . ... . .. .. .. . . ... . . . .... ...... ... ........ . .. . ... . . ... . ........................ . . . ...... . .. . . . .. . . . . . .. . ...... ... .. . .. . . . . . ... ... . . . ......... . . . ... . . .. ... .. .. .. . . . .. .. . ... ... .... . . . . . ....... .. . .. . ........ . ..... . . . . . ... .. .. .. . .. .. . . ............ . . ... .
lowQualScore : 8 9 9 99 7 9 444 9 99 88 77 5 1 777 4 4 4 4444 444444 222 55555555 4 22 4 444 4 1 444 5 555555555555555555555555 5 5 5 555555 1 88 7 0 7 11 4 4 4 7 4 11 4 111111 222 99 4 44 7 7 7 0 0 666 111 4 7 7 444444444 7 4 1 666 7 7 99 000 99 44 11 7 7 5 22 55 0 888 444 6666 0 0 0 7 7 2222222 22 4 66 8 66666666 4 11111 0 0 1 0 0 222 11 22 44 1 55 99 2 7 000000000000 3 0 888 2
consensus : GTTATCAAAAT-TCCTCAAC-GATC--GGGC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCCAG--GA-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-GTT--AAGT-TGTACTACGA---A-GTA-----AC--G--------------CAATA-TAG-AT-AAC-----GAATGT-TTTT-AAGAGCGA-GTTACTTTAAGTAG--AGT-ATACAA-TC-GGAATTCC-TC--GGATGATTC-CACTA-----TAC--ACAAG--GT-ACAAATCAAAGGAG-GAG-TTC-CGA-A-TTAGTATG---TTCAAGAACGC-G-CGTCTG-AC-TCT-T-AGCG--G-CGTCTAG-A-TTCATA-GA--AT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTTA-A---GCAA-TATACT----T-C-AATAAATCAATCA-ATAT-------CCC-GTGACATT--ACATTTNCAC-CA-AATGA-T-----AGGTAAGAATGAC-TTCGAA-TTNTTTCAAG--GAC-TAAGCAAAAAACAT-GGATA-AAGAA--TCGTAAGCTA-AT-GTG--T-TT--CTTGTAGCCGGGAGGTTCGAGCTC-T-ACTCGTGTCATAGC
Reference ( family-3406 ) : GTTATCAAAAT-TCCTCAAC-GATC--GGGC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCCAG--GA-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-GTT--AAGT-TGTACTACGA---A-GTA-----AC--G--------------CAATA-TAG-AT-AAC-----GAATGT-TTTT-AAGAGCGA-GTTACTTTAAGTAG--AGT-ATACAA-TC-GGAATTCC-TC--GGATGATTC-CACTA-----TAC--ACAAG--GT-ACAAATCAAAGGAG-GAG-TTC-CGA-A-TTAGTATG---TTCAAGAACGC-G-CGTCTG-AC-TCT-T-AGCG--G-CGTCTAG-A-TTCATA-GA--AT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTTA-A---GCAA-TATACT----T-C-AATAAATCAATCA-ATAT-------CCC-GTGACATT--ACATTTNCAC-CA-AATGA-T-----AGGTAAGAATGAC-TTCGAA-TTNTTTCAAG--GAC-TAAGCAAAAAACAT-GGATA-AAGAA--TCGTAAGCTA-AT-GTG--T-TT--CTTGTAGCCGGGAGGTTCGAGCTC-T-ACTCGTGTCATAGC
gi|1 : GTGATAAGAAT-TCCTCAAT-GATT--CGGC-TAGTAA---TAT-TA--GGATTGTGGGTGCGC-GTCCAG---A-TT-TTA-T----G-ATGC------ACT---TGC--------AT-TTT--T-GTT--TAGT-TGT-CTACAA---A-GTG-----CA--G--------------CAATG-TAGGAT-GAT-----G--TTT-TTTT-AAGA-TGA-GTTA-TTTAAGTAG--AGT-ATACAACTA-GGAATT-C-TC--GAATGATTT-CA-TA-----AGC--ACAGG--GTGAC-AAT--AAGGAGAGAG-TT--CGA-ATTTAGTATG---TTCAA-AACGC-G-C-TCTG-AC-TCT-T---CG--G-CGTCTAG-A-TTGATA-GAATAT---AA--TGTCTACATTTG-GACATTCTTCAA-GAT--AGAGATGTTATA---GCAA-TATACT----T-C-AAT-ATTAAAT---ATAT-------ATC-ATGA------------------A-AATGA-T-----AGGTAGGAA-GAC-TTCAAA-TTATCTCAAG--GACTTAAGCAAAA---ATGGGAT--AAGAA--TAGTAAGCTA-ATAGTG--TATT--CCTGTAGACTGGAGGTT-GAGCTCGTAACTCGTGT-ATAGC
gi|10 : agggctcagaataacgatgccgatggatccggggcgagtcattttgggtttgggctagtgatttggtaagagcatgcgtcctcgggctagtatttatttTTATTAAATT-TCCTCAAC-AATC--AAGC-TTCT-AA--TATATA--GA--TGTA--TGTGC-ATCC-G--GA-TT-TTA-TCTTAATATGCAAAATGATTTAATTT--------ACTTTT--T-GTT--AAGT-TAGACTATGA---A-GTA-----AC--A--------------CAATG-TAG-AT-AA
gi|11 : caaaataattgatcacttgatggtattaggccagcaattatgtatttggtctagtggttttgtaaaaagcatgtggcttggggtaattagtttgaaatacAAAAT-TTCTCCAC-AATT--TGGC-TTGTAAA--TAT-TA--------------CTCAGTCTGGTAGA-TT-TTA-CT---GCATAC------ACT---T---------------T--T-GTG--AAGT-TGTACTACAA---A-ATA-----AC--A--------------CAATG-TTG-AT-AGC-----GAAattta
gi|12 : aatataaatcaatggtccggggtttgggccatagtgatttgttaagagcatgcgtccttggggctagttaatttaactagtaaaatataaGTTATCTAAAT-TCCTCAAT-GATC--GGGC-TAGTAAA--TAT-TA--TA--TGTG--TGCGT-GTCCAA--AA-GT-TTA-TC---GCATGC------ACT---TCC--------AC-GTT--T-GTT--GAGT-TGTACTACAA---A-GTA-----A------------------CAGCA-CAG-AT-AAT-----GAATG--------AGAGCGA-gtaacagtgtacgctgtatgtgtatatgatacgtc
gi|13 : gggctcaaaataatcgatggtctggggccggtaaattttgggatagggctagtgatttgtaaagagcatggggctagtcaatttaattaAT-----GAATGT-TTCC-AAGACTGA-GTTATCTTTAGTGA--TAT-ATACGA-AC-AACATTAC-TT--GGATGATTC---TTT-----TAC--AC
gi|14 : GTTATCAAATT-TCATCAACCGATC--GG-C-TATTAA---TAT-TA--GA--TGTT--TGCAT-ATTCCG--GA-TT-T-A-TC---GCATGC------ACT---TCC--------AC-TTT--T-ACT--AAG--TGTATTttttaacatgatgcaagctgtctaattttctatgctatcatcaactggtgatgattacactttcacatatgatccaaaaagtaaaaatgatgccaactatattcttaggttaagtgaaaatcatggacaag
gi|15 : cagggctcgatgtaatcaacagcccgatgatttggggccagtaaattgggtttgggctagtgatttgtaaaagcatgcatccttgggctaattgatttcattaTTA-ACATGCAA-TA-ACT----T-C-AATAAATCAATCAGATAT-------CCC-----CATG--ACA---------A-AATGAAT-----AGGTAAGAATGAC-TTCAAATTTATTTCAA---GAC--AAGCAAAAAATCT---ATATATTAA--TC---AGC-A-AT-AT---T-TC--CTTTGAGCTAGG----TCGAGCTC-T-ACTCGTGTCAcagt
gi|16 : tcGA-G-CTAGTATGCTTTTCAAGAACAT-G-CGTCTatccatag
gi|16 : aattaattgtcctgaggtcgtgagccagcaagttatgagattGTTGTGACAAT-TCCTCAAC-GATC--GGGC-TAATAAA--TAT-TT--GA--TGCA--TATGT-GTttggggctagttactattttaactagttgtgacaattcctcaacgatcgggctaataaatatttgatgcatatgtgt
gi|17 : aattaattgtcctgaggtcgtgagccagcaagttatgagattgagctagtatgcttttcaagaacatgcgtctttggggctagttactattttaactaGT-GTCCAG--GA-TT-TTA-TC---ACATGC------ACT---TCC--------AC-TTT--TAGTT--TAG
gi|19 : cagggctcgaaataatcgatggtctgaggcatgagtttgggctagtgttgtaaaaagcatgcatcttttgggcaagtcaacttacatgtaactagtccacctctTTATCAAA-T-TCCTCAAC-GATC--GGGC-T
gi|2 : tcagggttcaaattcatggcctaatggtccagggcctaagtaaattatgggcttgggcttgtgatttgagaagtaaattattaattaatgaattacATAAAAAT-TCCTCAAT-CATC--GGGC-TCGTAA---TAT-TA--GA--T-TG--TGCGC-ATCCAG--GAATT-TTAATT---GCATGC------A-T---TCC--------A--TTT--T-GTT--A-GT-TGTTATAC-A---A-GTA------C--G--------------TAATA-TAG--T-A-------GAAT-T-TTTT-AGAGGTGA-GTTACTTTA-GTAG--AGT-AATCAA-GT-GGAATTCCCTC--GAATGATTC-CAC-A-----TAC--ACAAG--GT-G---ATCAAAGGAG-G-G-TTCACGA-A-TTAGTA-G---TTCAAGAACGC-G-CGTCTG-AA-TTT-----CG--G-CGTCTAG-A-TTCA-A-GA--AT---AA--ATT-----TTTGCA-CATTC-TCAA-A-T-CAGAGAC-TTA-A---GCAAATATACT----T-C-AATAAAT-AATCA-GTAT-------CAC-GTGACATTT-ACATTT--AC-GAGAATGA-T-----AGGTA-GAATGAC-TTCAAA-TTTTTTCAAG--GAC-T---CAAGAA--------------AA--TCGTCAGCTACAT-GTAGTT-TT--CTTGTAGCCGGAAGGTTCGATCTC-T-A-TTGTGCCATAGC
gi|20 : agggcatcgaaataaacgatggccaaatggtaacgccataaattttggtttgggctaagtgatttgataaagagcatcgatactcggggctagacaacttattcttgtgaTTA-A---GCAA-TATACTAAGAT-C-TATGTATCAATCA-AAAT-------CCG-GTAAGATTTTATATTTTCAC----------------------AAATGAC-TCTGAA-TAATTTCAAG--AAT-TAAGCAAAAAATAT-GG-TT-AAGAA--TCGTA
gi|21 : -TGTACTACGA---A-GTA-----AC--ATTATGTAATGTAGACAACA-TAG-AC-AACTTCGCGAATGT-CACA-TAGAACGA-ATTGTGTTAAGCGG--GGT-ATACAA-TC-GCCATTCC-TC--GGATAATTC-
gi|22 : GC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCTAG--AA-TT-TTA-TT---GCATGC------ACT---TCC--------AT-TC-------------T-TGTACTACAA---A-GTAAGAGTAC--A--------------CAATA-TAG-AT-AAC-----GAATGT-TTTT-AA
gi|23 : --TGTGT-GTCCAG---A-TT-TTA-TT---GGATGTTAAAT-ATT---TTCCTCAATTTAC-CTT--T-TTTTAAAGT-TGTACTATGA---A-ATA-----ACATG--------------TAATG-TTA-AT-AA
gi|24 : caTTACAC--A-AATGA-T-----GGGTAAGAATGAC-TTCAAT-TTTTTTCAAT--AAC-TAGGCAAAAAACAT-GGAT--AAGAA--TCGTAAG------------------CTTGTAGCCGGGAGGTTCGAGattcatga
gi|27 : A-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-GTT--CACT-TGTACTACAA---A-GT----------------------------T--TAA-AT-AAC-----GAATGT-TTTT-AAGA
gi|3 : ATCAAATTGTCCTCAAT-GATT--GGGCCTAGTAAA--TAT-TA--GAC-TG-G--TGCGT-GTCCAG--AA-TT-TTA--C---GCATGC------ACT---TCC--------AC-TTT--T-GTT--AAGTATGT-CTACAA---A-GTA-----AC--G--------------CAATA-TAG-AT-AAC-----GAATGT-TTTTTAAGAGTGA-GTTACTTTAAGTGG--AGTTATACA---C-AGAATTCC-TCGGGGATGATTC-CACTA-----CACAAACAAGCTTT-ACAAATCAAAGGA--GAG-TTC-CGA-ATTTAGTATGTC-TCCAAGAACGCGG-CATCTG-ACTTCT-A-AATG--GCCATCTAGAA-TTCATA-AA--ATAAAAA--TGTCTAA-TTTTT-ACATTT-ACAACAAT-GATAGG---TA-A---G-A---ATACT----G-CGAATAA
gi|3 : ggctcgaaatcaaacaatggcccgatgccagttaaattttgggtttggcgctgtaatgagcatgcacctcggtgctgagcaagatgtttacttgtggTT--ACATTTACAA-CA-A-TGA-T-----AGGTAAGAAT-AC-TGCGAA-TAATTTCACA--GAC-TAAGCAAAAAACAT-GGATA-AAGAATTTCGTAAGCTA-AT-GAG--T-TTTGCTTGTAGGCGCG-----TGAG-------TTCGTGTCATAtttcacagactaagcaaaaaacatggataaagaatttcgtaagctaatgagttttgcttgtaggcgcgtgagttcgtgtcata
gi|4 : ggctcgaaatcaaacaatggcccgatgccagttaaattttgggtttggcgctgtaatgagcatgcacctcggtgctgagcaagatgtttacttgtggatcaaattgtcctcaatgattgggcctagtaaatattagactggtgcgtgtccagaattttacgcatgcacttccacttttgttaagtatgtctacaaagtaacgcaatatagataacgaatgttttttaagagtgagttactttaagtggagttatacacagaattcctcggggatgattccactacacaaacaagctttacaaatcaaaggagagttccgaatttagtatgtctccaagaacgcggcatctgacttctaaatggccatctagaattcataaaataaaaatgtctaatttGTGATCAAAAT-TCCTCAAT-AATC--GGGC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCCAG--AA-TTGTTA-TC---ACATGC------ACT---TCC--------AC-TTT--T-GTT--AAGT-TGTACTACAA---A-GTA-----AA--G--------------CAATA-TAG-AT-AAC-----GAATGT-TTTT-AAGAGTGA-GTTACTTTAAGTAG--AGT-ATACAA-TC-GGAATTCT-TC--GAATGATTC-CACTA-----TAC--A-AAG--GT-ACAAATCAAAGGAG-GAG-TTT-CGA-A-TTAGTTTG---TTCAAGAACGC-G-CATCTG-AC-TCT-TCAGCGCGG-CGTCCAG-A-TTCATA-GA--GT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTTA-A---GCAA-TATACT----T-C-AATAAATCAATCA-ATAT-------CCC-GTGACATT--ACATTTACAC-CA-AATGA-T-----AGGTAAAAATGGC-TTCAAT-TTTTTTCAAG--GAC-TAAGC-AAAAACAT-AGATA-AAGAA--TCGTAAGCTA-AT-GTG--T-TC--CTTGTAGCCGGGAGGTTCGAGCTC-T-ACTCGTGTCATAGC
gi|5 : AAAAT-GC-TCAAT-AATC--GG-C-TA-TAAAAATAT-TA--G---TGTG---GCGT-GTTCCG--AA-TT-T-A-T----GCA-GC------ACT----CC--------AC-TTT--T-GTT--AAGT-TGTACTACAA---AAGTA-----AA--G--------------CAATA-CAG-ATTAAC-----GAATGT-TTT--AAGAGTGA-GTTACTGTAAGTAG--AGG-ATACAA-TC-GGAATGC--TC--GAAAGAT-C-CACT------TAT--ACAAG--GT-ACAAATCAAAG-AG-GAG-TTC-CGG-A-TTAGTATG---TTCAAGA-CGC-GGCATCTGGAC-TCT-TCAGCGCGG-CGTCCAG-AGTTCAAA-GA--AT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTT--A---GC-A-TATACT----T-C-AATAAAACAATCA-ATATATATACACTCAATGATA-T--ACATATATACACACAATGA-T-----ca
gi|6 : tcagggctcgaaataaacgatggcagttaaatttgggtttgggcctaggatttataaagagcatcgagtcctcgggggcatagtaaaatttcatcttgtgatGTTATCAAAAT-CCCTCAAT-GATCACGGGC-TAGTACA--T-T-TACAGA--TGTG--TGCGC-GTCCAG--A--------------------------ACT---TCC--------AC-TTTTGT-GTT--TAGT-TGTACTACGAAGTA-GTA-----AC--A--------------CAATAGTAT-AT-AAA-----GAATACGTTTT-AAGAGCGATTTTATGTCATATAGTTAGC-GT-TAA-TCTAGCATTCT-TC--GGATGAATCTCACTT-----CA---AC-AG--GTAAAAAACCACAGGAG-GAGCTTC-CGACA-TTATTATGT--TTCAAGAA-----------G-AT-TCTGT-A--------------------ATA-A--------AA--TGTCTAC-TTTGCAACACAT-TCGA-ATTCCAGAGACGTTA-A---GC----ATATT----TAC-AATCTATCAATCA-AGA--------ATC-GTATCATT--ATATTTTCAC-TA-
gi|7 : cagggtgtagaataaacgaggcccaccgattggtcggcggccagtaaattttggttttgggctagtttgatttctaaagagcatgcgtcctgctaggtgaaataacta-TT-TTA-TC---ACTTGC------ACT---TCA--------AA-TTT--T-GTT--GATT-TGTACTACAA---A-ATA-----AC-------------------ATG-TAG-AT-------------GT-TTCT-AAGAACAG-GCTATCTTCAGTAA--AAT-AAATGA-TT-GGCATTCC-TT--GAATGATTC-CTCTACATTTTAA--ACAAG--GC-ATAAGACACAGGAG-GAG-TTC-TTA-G-TTAGTATA---TATAAAAACAC-A-CGTCT-------T-T-GGCA--G-CA---AG-T-TTC-TATGA--AT---GAACTGTCTAA-TTTGAAA
gi|7 : AT-------CCA-GTGACATT--ACACTTTCA--CA-GATGA-CACGAAAAGTGAAGATGACACT---A-TTTTCTGAGGTTGAT-GAAGTGAAAAGCAT-GAATA-tccagtgacattacactttcacagatgacacgaaaagtgaagatgacactattttctgaggttgatgaagtgaaaagcatgaatag
gi|8 : ttttatcacttgcacttcaaattttgttgatttgtactacaaaataacatgtagatgtttctaagaacaggctatcttcagtaaaataaatgattggcattccttgaatgattcctctacattttaaacaaggcataagacacaggaggagttcttagttagtatatataaaaacacacgtctttggcagcaagtttctatgaatgaactgtctaatttgaaTTATTAAATT-TCCTCAAC-AATC--AAGC-TTCTAAA--TAT-TA--GA--TGTA--TGTGC-ATCCAG--GA-TT-TTA-TCTTAATATGCAAAATGATTTAATTT--------AC-TTT--T-GTT--AAGT-TAGACTATGA---A-GTA-----AC--A--------------CAATG-TAG-AT-AAg
gi|9 : ggctcaaaataattgatcacttgatggtattaggccagcaaattatgtatttggtctagtgttttgtaaaaagcatgtggccttggggtaattagtttgaatacGTTATCAAATT-TCATCAAC-GATC--GGGC-TATTAAA--TAT-TA--GA--TGTT--TGCAT-ATTCCG--GA-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-ACT--AAGT-TGTAATA-GT---G-GTA-----ACATG--------------AAAAA-CAT-AT-AA------AAATAT-Tatttatgaat
blockSeqs : T G C AC C C AAA A CA C . A TAG A G A CTTA AAAATG TAA CTCAATTT T TG A TAA A G AGT A ACATTATGTAATGTAGA G . T CTTCGC G TT T T TT T . T C C GG T ACATTT CAA CT A CA . C A C T CTT GG G G T TCAGCGCG C T T AA T T . AAA AC A CA . C A CC CG . CAT AAA AAGA A G A G ATATACA AA C TT ATACACAC A ACGAA A A A T A GTT T AT G AT TT T C GTAGTTTT A C T C
blockSeqs : A . . . . G A . . . . . G . . . CTTA AAAATG TAA . . . . A . A . . AGAGTACA . . . C . C . C . . . . A . . . T C . . CA . . . . . TC GG G . . TCAGCGCG . T T AG T . . . . C CA . . A C CG . . AA . . . A . . G C T ACAACA . . A . A . T G T AT G T . T . GAGTTTTG A C T T
blockSeqs : A . . . . G A . . . . . A . . . T TAAAT . . . . . A . A . . ACATG . . . T . T . T . . . . C . . . A C . . CA . . . . . T G A . . AAATG . T C A A . . . . C CA . . A G CG . . AA . . . G . . G G . ACACCA . . A . G . A G T AC G A . T . GTGTTC A C T C
blockSeqs : T . . . . T A . . . . . G . . . C . . . . . . G . G . . ACATG . . . T . A . C . . . . A . . . A C . . AA . . . . . . G A . . TGGCA . T C A T . . . . C CA . . T C C . . AA . . . A . . G C . TCACTA . . A . A . T T T AC A A . . . ATTTC . T . .
blockSeqs : A . . . . A A . . . . . G . . . C . . . . . . A . A . . ACA . . . C . T . C . . . . A . . . A T . . TA . . . . . . G A . . GTA . . . T T . . . . A AA . . . C . . . A . . . A . . G T . ACGAG . . A . G . A A T AC G A . . . . . C
blockSeqs : A . . . . G A . . . . . G . . . C . . . . . . T . G . . ACA . . . C . T . C . . . . A . . . T A . . . . . . . . . A G . . CG . . . . . . . . . . T . . A . . . A . . G C . ACACA . . . . A . T G G GC . . .
blockSeqs : T . . . . G A . . . . . A . . . T . . . . . . A . A . . ACG . . . C . T . T . . . . C . . . . . . . . . . . . . . . . C . . C . TCACA . . . . . . T . . . . .
blockSeqs : A . . . . G A . . . . . A . . . T . . . . . . C . A . . AAG . . . C . T . T . . . . C . . . . TCAC . .
blockSeqs : A . . . . G A . . . . . A . . . T . . . . . . A . A . . AAG . . . C . T . A
blockSeqs : A . . . . G A . . . . . A . . . C . . . . . . A . A . . ACA . . . A . .
blockSeqs : T . . . . C A . . . . . A . . . C . . . . . . A . G . . ACA . . . . . .
blockSeqs : T . . . . T . . . . . . G . . . C . . . . . . T . A . . CG . . . . .
blockSeqs : . . . . . . . . . . . . G . . . C . . . . . . G . G . . AC . . . .
blockSeqs : . . . . . . . C . . . . . . A . G . . A . . .
blockSeqs : . . . . . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqCons : A** ** ** G** C*** CA TAGGCG*** ** C* CA C* NCACA*** T* AC G* A* T**
originalCons : GTTATCAAAAT-TCCTCAAC-GATC--GGGC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCCAG--GA-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-GTT--AAGT-TGTACTACGA---A-GTA-----AC--G--------------CAATA-TAG-AT-AAC-----GAATGT-TTTT-AAGAGCGA-GTTACTTTAAGTAG--AGT-ATACAA-TC-GGAATTCC-TC--GGATGATTC-CACTA-----TAC--ACAAG--GT-ACAAATCAAAGGAG-GAG-TTC-CGA-A-TTAGTATG---TTCAAGAACGC-G-CGTCTG-AC-TCT-T-AGCG--G-CGTCTAG-A-TTCATA-GA--AT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTTA-A---GCAA-TATACT----T-C-AATAAATCAATCA-ATAT-------CCC-GTGACATT--ACATTTNCAC-CA-AATGA-T-----AGGTAAGAATGAC-TTCGAA-TTNTTTCAAG--GAC-TAAGCAAAAAACAT-GGATA-AAGAA--TCGTAAGCTA-AT-GTG--T-TT--CTTGTAGCCGGGAGGTTCGAGCTC-T-ACTCGTGTCATAGC
finalCons : GTTATCAAAAT-TCCTCAAC-GATC--GGGC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCCAGG--A-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-GTT--AAGT-TGTACTACGA---A-GTA-----AC--G--------------CAATA-TAG-AT-AAC-----GAATGT-TTTT-AAGAGCGA-GTTACTTTAAGTAG--AGT-ATACAA-TC-GGAATTCC-TC--GGATGATTC-CACTA-----TAC--ACAAG--GT-ACAAATCAAAGGAG-GAG-TTC-CGA-A-TTAGTATG---TTCAAGAACGC-G-CGTCTG-AC-TCTTAGGCG---G-CGTCTAG-A-TTCATA-GA--AT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AATC-AGAGACGTTA-A---GCAA-TATACT----T-C-AATAAATCAATCA-ATAT-------CCC-GTGACATT--ACATTTNCACA---AATGA-T-----AGGTAAGAATGAC-TTCGAA-TTNTTTCAAG--GACT-AAGCAAAAAACATG-GATA-AAGAA--TCGTAAGCTA-AT-GTG--T-TT--CTTGTAGCCGGGAGGTTCGAGCTCT--ACTCGTGTCATAGC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GGCTCAAAATAACTGATGTCCCAAAGGTTTGGGGCTAGTAAATAATAGATTACGGCCAGTGCTTTGTAAAATGCATGTGCCCTAGGGGCTAGTTAATTTGAATACATGCCAAAATTCTTTATTGAATAATCAGGG
Unaligned ( gi|25 ): GAGCTCAAAATAAGCAATGGTCCAGGGCCAATAAATTATGGGATTGGGCTAGTGATTTGTAAATATTATATGTCCTTTGGGCTAGTTAGATTA
Unaligned ( gi|26 ): AGGGCTCGAAATAAATTATGGCCCAATCGTCCTGGGACAGTAAATTTTGGGCTTGGGCTAGTGATTTGTAAAGAGCAGGTA
Unaligned ( gi|28 ): CAGGGCTCGAAATAAACGATGGCCAGTAAATTTTGGGTTTGGGCTAGTG
Alignments
lowQualScore : 111111 222222222222222222222222 111111 1 1 222 4444444 111 1111 1111111 2222222 11 222222222222 111
lowQualScore : 3 2 2 33 2 1 555 2 33 66 33 2 0 666 2 2 2 9999 999999 888 88888888 2 33 2 333 2 2 444 2 666666666666666666666666 2 2 2 999999 3 33 0 4 2 66 4 4 4 1 4 66 4 666666 888 77 1 44 5 5 5 5 0 000 555 5 5 4444444 5 1 2 999 1 5 77 000 77 66 33 6 6 3 99 33 5 888 888 0000 5 5 2 5 3 4444444 4 66 4 6666 1 3 3 4 1111111 0 4 4 4 1 4 888 4 3 44 11 77 3 6 333333333333 7 1 111 3
lowQualScore : . . . .. . . ... . .. .. .. . . ... . . . .... ...... ... ........ . .. . ... . . ... . ........................ . . . ...... . .. . . . .. . . . . . .. . ...... ... .. . .. . . . . . ... ... . . ....... . . . ... . . .. ... .. .. .. . . . .. .. . ... ... .... . . . . . ....... . .. . .... . . . . ....... . . . . . . ... . . .. .. .. . . ............ . . ... .
lowQualScore : 8 9 9 99 7 9 444 9 99 88 77 5 1 777 4 4 4 4444 444444 222 55555555 4 22 4 444 4 1 444 5 555555555555555555555555 5 5 5 555555 1 88 7 0 7 11 4 4 4 7 4 11 4 111111 222 99 4 44 7 7 7 0 0 666 111 4 7 6666666 7 4 1 666 7 7 99 000 99 44 11 7 7 5 22 55 0 888 444 6666 0 0 0 0 4 4444444 4 33 0 8888 3 5 6 0 4444444 8 4 4 4 0 4 000 4 7 66 99 99 2 7 000000000000 3 0 888 2
consensus : GTTATCAAAAT-TCCTCAAC-GATC--GGGC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCCAG--GA-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-GTT--AAGT-TGTACTACGA---A-GTA-----AC--G--------------CAATA-TAG-AT-AAC-----GAATGT-TTTT-AAGAGCGA-GTTACTTTAAGTAG--AGT-ATACAA-TC-GGAATTCC-TC--GGATGATTC-CACTA-----TAC--ACAAG--GT-ACAAATCAAAGGAG-GAG-TTC-CGA-A-TTAGTATG---TTCAAGAACGC-G-CGTCTG-ACTCT-T-AG-GCGG-CGTCTAG-A-TTCATA-GA--AT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTTA-A---GC-AATATACT----T-C-AATAAATCAATCA-ATAT-------CCC-GTGAC-A-T-T--ACATTTNCA-CA-AATGA-T-----AGGTAAGAATGAC-TTCGAA-TTNT-TTCAAG--GAC-TAAGCGAAAAACAT-GGATA-AAGAA--TCGTAAGCTA-AT-GTG--T-TT--CTTGTAGCCGGGAGGTTCGAGCTC-T-ACTCGTGTCATAGC
Reference ( family-3406 ) : GTTATCAAAAT-TCCTCAAC-GATC--GGGC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCCAG--GA-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-GTT--AAGT-TGTACTACGA---A-GTA-----AC--G--------------CAATA-TAG-AT-AAC-----GAATGT-TTTT-AAGAGCGA-GTTACTTTAAGTAG--AGT-ATACAA-TC-GGAATTCC-TC--GGATGATTC-CACTA-----TAC--ACAAG--GT-ACAAATCAAAGGAG-GAG-TTC-CGA-A-TTAGTATG---TTCAAGAACGC-G-CGTCTG-ACTCT-T-AG-GCGG-CGTCTAG-A-TTCATA-GA--AT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTTA-A---GC-AATATACT----T-C-AATAAATCAATCA-ATAT-------CCC-GTGAC-A-T-T--ACATTTNCA-CA-AATGA-T-----AGGTAAGAATGAC-TTCGAA-TTNT-TTCAAG--GAC-TAAGCAAAAAACAT-GGATA-AAGAA--TCGTAAGCTA-AT-GTG--T-TT--CTTGTAGCCGGGAGGTTCGAGCTC-T-ACTCGTGTCATAGC
gi|1 : GTGATAAGAAT-TCCTCAAT-GATT--CGGC-TAGTAA---TAT-TA--GGATTGTGGGTGCGC-GTCCAG---A-TT-TTA-T----G-ATGC------ACT---TGC--------AT-TTT--T-GTT--TAGT-TGT-CTACAA---A-GTG-----CA--G--------------CAATG-TAGGAT-GAT-----G--TTT-TTTT-AAGA-TGA-GTTA-TTTAAGTAG--AGT-ATACAACTA-GGAATT-C-TC--GAATGATTT-CA-TA-----AGC--ACAGG--GTGAC-AAT--AAGGAGAGAG-TT--CGA-ATTTAGTATG---TTCAA-AACGC-G-C-TCTG-ACTCT-T-----CGG-CGTCTAG-A-TTGATA-GAATAT---AA--TGTCTACATTTG-GACATTCTTCAA-GAT--AGAGATGTTATA---GC-AATATACT----T-C-AAT-ATTAAAT---ATAT-------ATC-ATGA--------------------A-AATGA-T-----AGGTAGGAA-GAC-TTCAAA-TTAT-CTCAAG--GACTTAAGCAAAA---ATGGGAT--AAGAA--TAGTAAGCTA-ATAGTG--TATT--CCTGTAGACTGGAGGTT-GAGCTCGTAACTCGTGT-ATAGC
gi|10 : agggctcagaataacgatgccgatggatccggggcgagtcattttgggtttgggctagtgatttggtaagagcatgcgtcctcgggctagtatttatttTTATTAAATT-TCCTCAAC-AATC--AAGC-TTCT-AA--TATATA--GA--TGTA--TGTGC-ATCC-G--GA-TT-TTA-TCTTAATATGCAAAATGATTTAATTT--------ACTTTT--T-GTT--AAGT-TAGACTATGA---A-GTA-----AC--A--------------CAATG-TAG-AT-AA
gi|11 : caaaataattgatcacttgatggtattaggccagcaattatgtatttggtctagtggttttgtaaaaagcatgtggcttggggtaattagtttgaaatacAAAAT-TTCTCCAC-AATT--TGGC-TTGTAAA--TAT-TA--------------CTCAGTCTGGTAGA-TT-TTA-CT---GCATAC------ACT---T---------------T--T-GTG--AAGT-TGTACTACAA---A-ATA-----AC--A--------------CAATG-TTG-AT-AGC-----GAAattta
gi|12 : aatataaatcaatggtccggggtttgggccatagtgatttgttaagagcatgcgtccttggggctagttaatttaactagtaaaatataaGTTATCTAAAT-TCCTCAAT-GATC--GGGC-TAGTAAA--TAT-TA--TA--TGTG--TGCGT-GTCCAA--AA-GT-TTA-TC---GCATGC------ACT---TCC--------AC-GTT--T-GTT--GAGT-TGTACTACAA---A-GTA-----A------------------CAGCA-CAG-AT-AAT-----GAATG--------AGAGCGA-gtaacagtgtacgctgtatgtgtatatgatacgtc
gi|13 : gggctcaaaataatcgatggtctggggccggtaaattttgggatagggctagtgatttgtaaagagcatggggctagtcaatttaattaAT-----GAATGT-TTCC-AAGACTGA-GTTATCTTTAGTGA--TAT-ATACGA-AC-AACATTAC-TT--GGATGATTC---TTT-----TAC--AC
gi|13 : ATCA-TCA-A----------CTG-GTGATGA-T-T--ACACTTTCA-CA-TATGA-TCCAAAAAGTAAAAATGA--TGCCAA-CTATATTCTTA--GGT-TAAGTGAAAATCAT-GGACA-Attttaacatgatgcaagctgtctaattttctatgctatcatcaactggtgatgattacactttcacatatgatccaaaaagtaaaaatgatgccaactatattcttaggttaagtgaaaatcatggacaag
gi|14 : atgaatgtttccaagactgagttatctttagtgatatatacgaacaacattacttggatgattcttttacacttttaacatgatgcaagctgtctaattttctatgctGTTATCAAATT-TCATCAACCGATC--GG-C-TATTAA---TAT-TA--GA--TGTT--TGCAT-ATTCCG--GA-TT-T-A-TC---GCATGC------ACT---TCC--------AC-TTT--T-ACT--AAG--TGTATTg
gi|15 : cagggctcgatgtaatcaacagcccgatgatttggggccagtaaattgggtttgggctagtgatttgtaaaagcatgcatccttgggctaattgatttcattaTTA-ACATGC-AATA-ACT----T-C-AATAAATCAATCAGATAT-------CCC-----C-A-T-G--ACA--------A-AATGAAT-----AGGTAAGAATGAC-TTCAAATTTAT-TTCAA---GAC--AAGCAAAAAATCT---ATATATTAA--TC---AGC-A-AT-AT---T-TC--CTTTGAGCTAGG----TCGAGCTC-T-ACTCGTGTCAcagt
gi|16 : tcGA-G-CTAGTATGCTTTTCAAGAACAT-G-CGTCTatccatag
gi|16 : aattaattgtcctgaggtcgtgagccagcaagttatgagattGTTGTGACAAT-TCCTCAAC-GATC--GGGC-TAATAAA--TAT-TT--GA--TGCA--TATGT-GTttggggctagttactattttaactagttgtgacaattcctcaacgatcgggctaataaatatttgatgcatatgtgt
gi|17 : aattaattgtcctgaggtcgtgagccagcaagttatgagattgagctagtatgcttttcaagaacatgcgtctttggggctagttactattttaactaGT-GTCCAG--GA-TT-TTA-TC---ACATGC------ACT---TCC--------AC-TTT--TAGTT--TAG
gi|19 : cagggctcgaaataatcgatggtctgaggcatgagtttgggctagtgttgtaaaaagcatgcatcttttgggcaagtcaacttacatgtaactagtccacctctTTATCAAA-T-TCCTCAAC-GATC--GGGC-T
gi|2 : tcagggttcaaattcatggcctaatggtccagggcctaagtaaattatgggcttgggcttgtgatttgagaagtaaattattaattaatgaattacATAAAAAT-TCCTCAAT-CATC--GGGC-TCGTAA---TAT-TA--GA--T-TG--TGCGC-ATCCAG--GAATT-TTAATT---GCATGC------A-T---TCC--------A--TTT--T-GTT--A-GT-TGTTATAC-A---A-GTA------C--G--------------TAATA-TAG--T-A-------GAAT-T-TTTT-AGAGGTGA-GTTACTTTA-GTAG--AGT-AATCAA-GT-GGAATTCCCTC--GAATGATTC-CAC-A-----TAC--ACAAG--GT-G---ATCAAAGGAG-G-G-TTCACGA-A-TTAGTA-G---TTCAAGAACGC-G-CGTCTG-AATTT-------CGG-CGTCTAG-A-TTCA-A-GA--AT---AA--ATT-----TTTGCA-CATTC-TCAA-A-T-CAGAGAC-TTA-A---GCAAATATACT----T-C-AATAAAT-AATCA-GTAT-------CAC-GTGAC-ATT-T--ACATTTACG-AG-AATGA-T-----AGGT-AGAATGAC-TTCAAA-TTTT-TTCAAG--GAC-T---CAAGAA--------------AA--TCGTCAGCTACAT-GTAGTT-TT--CTTGTAGCCGGAAGGTTCGATCTC-T-A-TTGTGCCATAGC
gi|20 : agggcatcgaaataaacgatggccaaatggtaacgccataaattttggtttgggctaagtgatttgataaagagcatcgatactcggggctagacaacttattcttgtgaTTA-A---GC-AATATACTAAGAT-C-TATGTATCAATCA-AAAT-------CCG-GTAAG-A-T-TTTATATTTTCA-CA-AATGA-------------------C-TCTGAA-TAAT-TTCAAG--AAT-TAAGCAAAAAATAT-GG-TT-AAGAA--TCGTA
gi|21 : -TGTACTACGA---A-GTA-----AC--ATTATGTAATGTAGACAACA-TAG-AC-AACTTCGCGAATGT-CACA-TAGAACGA-ATTGTGTTAAGCGG--GGT-ATACAA-TC-GCCATTCC-TC--GGATAATTC-
gi|22 : GC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCTAG--AA-TT-TTA-TT---GCATGC------ACT---TCC--------AT-TC-------------T-TGTACTACAA---A-GTAAGAGTAC--A--------------CAATA-TAG-AT-AAC-----GAATGT-TTTT-AA
gi|23 : --TGTGT-GTCCAG---A-TT-TTA-TT---GGATGTTAAAT-ATT---TTCCTCAATTTAC-CTT--T-TTTTAAAGT-TGTACTATGA---A-ATA-----ACATG--------------TAATG-TTA-AT-AA
gi|24 : caTTACA-CA-AATGA-T-----GGGTAAGAATGAC-TTCAAT-TTTT-TTCAAT--AAC-TAGGCAAAAAACAT-GGAT--AAGAA--TCGTAAG------------------CTTGTAGCCGGGAGGTTCGAGattcatga
gi|27 : A-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-GTT--CACT-TGTACTACAA---A-GT----------------------------T--TAA-AT-AAC-----GAATGT-TTTT-AAGA
gi|3 : ATCAAATTGTCCTCAAT-GATT--GGGCCTAGTAAA--TAT-TA--GAC-TG-G--TGCGT-GTCCAG--AA-TT-TTA--C---GCATGC------ACT---TCC--------AC-TTT--T-GTT--AAGTATGT-CTACAA---A-GTA-----AC--G--------------CAATA-TAG-AT-AAC-----GAATGT-TTTTTAAGAGTGA-GTTACTTTAAGTGG--AGTTATACA---C-AGAATTCC-TCGGGGATGATTC-CACTA-----CACAAACAAGCTTT-ACAAATCAAAGGA--GAG-TTC-CGA-ATTTAGTATGTC-TCCAAGAACGCGG-CATCTG-ACTTC-T-AA-ATGGCCATCTAGAA-TTCATA-AA--ATAAAAA--TGTCTAA-TTTTT-ACATTT-ACAACAAT-GATAGG---TA-A---G--A--ATACT----G-CGAATAA
gi|3 : ggctcgaaatcaaacaatggcccgatgccagttaaattttgggtttggcgctgtaatgagcatgcacctcggtgctgagcaagatgtttacttgtgg-T-T--ACATTTACA-AC-AATGA-T-----AGGTAAGAAT-AC-TGCGAA-TAAT-TTCACA--GAC-TAAGCAAAAAACAT-GGATA-AAGAATTTCGTAAGCTA-AT-GAG--T-TTTGCTTGTAGGCGCG-----TGAG-------TTCGTGTCATAtttcacagactaagcaaaaaacatggataaagaatttcgtaagctaatgagttttgcttgtaggcgcgtgagttcgtgtcata
gi|4 : ggctcgaaatcaaacaatggcccgatgccagttaaattttgggtttggcgctgtaatgagcatgcacctcggtgctgagcaagatgtttacttgtggatcaaattgtcctcaatgattgggcctagtaaatattagactggtgcgtgtccagaattttacgcatgcacttccacttttgttaagtatgtctacaaagtaacgcaatatagataacgaatgttttttaagagtgagttactttaagtggagttatacacagaattcctcggggatgattccactacacaaacaagctttacaaatcaaaggagagttccgaatttagtatgtctccaagaacgcggcatctgacttctaaatggccatctagaattcataaaataaaaatgtctaatttGTGATCAAAAT-TCCTCAAT-AATC--GGGC-TAGTAAA--TAT-TA--GA--TGTG--TGCGC-GTCCAG--AA-TTGTTA-TC---ACATGC------ACT---TCC--------AC-TTT--T-GTT--AAGT-TGTACTACAA---A-GTA-----AA--G--------------CAATA-TAG-AT-AAC-----GAATGT-TTTT-AAGAGTGA-GTTACTTTAAGTAG--AGT-ATACAA-TC-GGAATTCT-TC--GAATGATTC-CACTA-----TAC--A-AAG--GT-ACAAATCAAAGGAG-GAG-TTT-CGA-A-TTAGTTTG---TTCAAGAACGC-G-CATCTG-ACTCT-TCAGCGCGG-CGTCCAG-A-TTCATA-GA--GT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTTA-A---GC-AATATACT----T-C-AATAAATCAATCA-ATAT-------CCC-GTGAC-A-T-T--ACATTTACACCA-AATGA-T-----AGGTAAAAATGGC-TTCAAT-TTTT-TTCAAG--GAC-TAAGC-AAAAACAT-AGATA-AAGAA--TCGTAAGCTA-AT-GTG--T-TC--CTTGTAGCCGGGAGGTTCGAGCTC-T-ACTCGTGTCATAGC
gi|5 : AAAAT-GC-TCAAT-AATC--GG-C-TA-TAAAAATAT-TA--G---TGTG---GCGT-GTTCCG--AA-TT-T-A-T----GCA-GC------ACT----CC--------AC-TTT--T-GTT--AAGT-TGTACTACAA---AAGTA-----AA--G--------------CAATA-CAG-ATTAAC-----GAATGT-TTT--AAGAGTGA-GTTACTGTAAGTAG--AGG-ATACAA-TC-GGAATGC--TC--GAAAGAT-C-CACT------TAT--ACAAG--GT-ACAAATCAAAG-AG-GAG-TTC-CGG-A-TTAGTATG---TTCAAGA-CGC-GGCATCTGGACTCT-TCAGCGCGG-CGTCCAG-AGTTCAAA-GA--AT---AA--TGTCTAC-TTTGCAACATTC-TCAA-AAT-CAGAGACGTT--A---GC--ATATACT----T-C-AATAAAACAATCA-ATATATATACACTCAATGAT-A-TAC--ATATATACA-CACAATGA-T-----ca
gi|6 : tcagggctcgaaataaacgatggcagttaaatttgggtttgggcctaggatttataaagagcatcgagtcctcgggggcatagtaaaatttcatcttgtgatGTTATCAAAAT-CCCTCAAT-GATCACGGGC-TAGTACA--T-T-TACAGA--TGTG--TGCGC-GTCCAG--A--------------------------ACT---TCC--------AC-TTTTGT-GTT--TAGT-TGTACTACGAAGTA-GTA-----AC--A--------------CAATAGTAT-AT-AAA-----GAATACGTTTT-AAGAGCGATTTTATGTCATATAGTTAGC-GT-TAA-TCTAGCATTCT-TC--GGATGAATCTCACTT-----CA---AC-AG--GTAAAAAACCACAGGAG-GAGCTTC-CGACA-TTATTATGT--TTCAAGAA-----------G-ATTCTGT-A--------------------ATA-A--------AA--TGTCTAC-TTTGCAACACAT-TCGA-ATTCCAGAGACGTTA-A---GC----ATATT----TAC-AATCTATCAATCA-AGA--------ATC-GTATC-A-T-T--ATATTTTCA-C
gi|7 : cagggtgtagaataaacgaggcccaccgattggtcggcggccagtaaattttggttttgggctagtttgatttctaaagagcatgcgtcctgctaggtgaaataacta-TT-TTA-TC---ACTTGC------ACT---TCA--------AA-TTT--T-GTT--GATT-TGTACTACAA---A-ATA-----AC-------------------ATG-TAG-AT-------------GT-TTCT-AAGAACAG-GCTATCTTCAGTAA--AAT-AAATGA-TT-GGCATTCC-TT--GAATGATTC-CTCTACATTTTAA--ACAAG--GC-ATAAGACACAGGAG-GAG-TTC-TTA-G-TTAGTATA---TATAAAAACAC-A-CGTCT------T-T--G-GCAG-CA---AG-T-TTC-TATGA--AT---GAACTGTCTAA-TTTGAAAta
gi|7 : AT-------CCA-GTGAC-A-T-T--ACACTTTCA-CA-GATGA-CACGAAAAGTGAAGATGACACT---A-TTTT-CTGAGGTTGAT-GAAGTGAAAAGCAT-GAATA-tccagtgacattacactttcacagatgacacgaaaagtgaagatgacactattttctgaggttgatgaagtgaaaagcatgaatag
gi|8 : ttttatcacttgcacttcaaattttgttgatttgtactacaaaataacatgtagatgtttctaagaacaggctatcttcagtaaaataaatgattggcattccttgaatgattcctctacattttaaacaaggcataagacacaggaggagttcttagttagtatatataaaaacacacgtctttggcagcaagtttctatgaatgaactgtctaatttgaaTTATTAAATT-TCCTCAAC-AATC--AAGC-TTCTAAA--TAT-TA--GA--TGTA--TGTGC-ATCCAG--GA-TT-TTA-TCTTAATATGCAAAATGATTTAATTT--------AC-TTT--T-GTT--AAGT-TAGACTATGA---A-GTA-----AC--A--------------CAATG-TAG-AT-AAg
gi|9 : ggctcaaaataattgatcacttgatggtattaggccagcaaattatgtatttggtctagtgttttgtaaaaagcatgtggccttggggtaattagtttgaatacGTTATCAAATT-TCATCAAC-GATC--GGGC-TATTAAA--TAT-TA--GA--TGTT--TGCAT-ATTCCG--GA-TT-TTA-TC---GCATGC------ACT---TCC--------AC-TTT--T-ACT--AAGT-TGTAATA-GT---G-GTA-----ACATG--------------AAAAA-CAT-AT-AA------AAATAT-Tatttatgaat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GGCTCAAAATAACTGATGTCCCAAAGGTTTGGGGCTAGTAAATAATAGATTACGGCCAGTGCTTTGTAAAATGCATGTGCCCTAGGGGCTAGTTAATTTGAATACATGCCAAAATTCTTTATTGAATAATCAGGG
Unaligned ( gi|25 ): GAGCTCAAAATAAGCAATGGTCCAGGGCCAATAAATTATGGGATTGGGCTAGTGATTTGTAAATATTATATGTCCTTTGGGCTAGTTAGATTA
Unaligned ( gi|26 ): AGGGCTCGAAATAAATTATGGCCCAATCGTCCTGGGACAGTAAATTTTGGGCTTGGGCTAGTGATTTGTAAAGAGCAGGTA
Unaligned ( gi|28 ): CAGGGCTCGAAATAAACGATGGCCAGTAAATTTTGGGTTTGGGCTAGTG