lowQualScore : 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 222 111 77777777777777 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 44444 1 11 1111 2 222 1 4 6666666666666666 33 1 444444 2 4444 444 777777777777777 1 1 33 4444 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 111 44444444 22222222222 22 1
lowQualScore : 4 7 77 3 7 6 4 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111 333 55555555555555 3 1 8 8 0 3 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 4 99999 0 2 33 9999 6 888 5 0 2 7777777777777777 11 5 2 999999 0 2222 444 6 6 4 222222222222222 7 7 77 6 2222 6 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2 000 11111111 5 6 0 44444444444 66 55 1 1
lowQualScore : . . .. . . . . ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ... ... .............. . . . . . . .............................................................................................................................................................................................................................................. . ..... . . .. .... . ... . . . ................ .. . . ...... . .... ... . . . ............... . . .. . .... . ....................................................................................................................................................................................... . ... ........ . . . ........... .. .. . .
lowQualScore : 0 3 77 3 7 7 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 333 333 33333333333333 2 2 0 0 8 2 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 55555 0 5 22 5555 7 555 5 0 5 0000000000000000 00 0 5 000000 0 5555 000 0 0 0 000000000000000 0 3 00 0 0000 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 888 55555555 0 5 8 33333333333 11 99 4 4
consensus : TAANGAAAAACGCCGAA-TTNTNATNCTACTTCCGGTTGTGNTGAAAANGTATCAAACTNTCCGGTGGGCGGACAATTNTNNGGACCTTNAAACACAGTCTATGTNCACTACTTACGNTTAACA--CTT--ATAAAA------CGAAAAAA---NAT---ATTTTAG--ATAC------------TACTTC-CGGTGGACG--ACGGAAGT-GACG-GCAAT-AAAATTTTGA-AATGC--GT-TTTTTCATTT--AAATTGATTGCNATCTA-TC-ATCCCG-TGA-AAGTT--TGAAGACT---CT---ATCTTT-A-TCATAAATG-AGAAA-----CCGCANANCTTC--CGGTTCTTTT---AAGC-A-CT---TCCGG------TATCTT-CAGAGCTTCAAAATA-ACGACTGAAATC-TCCACAATGAG-CGTGCG----G-G-AATCATTTTT-N-AAATTTTCAATGNAAA-ACGCTTGAATNNTNGT--GCAACT-TTCCGGTTNTGGTGAAAAANAAACTTTCCGGG-TGGACATTT-T--AAGGACTCAAAACAGTCTATAT-TA-----CTA--TTTCTAAACACTTAAAA-CGAAAAAAAGT-AAAAAA--AA-CTACA-TTTTTATAC-T-ACTTCCGGTGGACGACGGA-AAGTG-AC--GGCAANAAAATTGAAATAGATATTTC-T--TTC---TG-AATTGTTGCC-A--ATCTA-TCATC-CCTGAAAGTTT--GAAGAC-CTAC-ATC---T----------TG--CATTCA-TCGTTATG-G-GAAA-TCGTTCGAA-TAAA-ATCTAATTT--------T-----TA--AATCGGCCATATCCTCGGCGAC-CGG-AAGTAAG--TTTTTGC--AAAAATATTTGACGTTA-GC-CT-ANAGA-ATGTTNGATGTCAATAATATGTGTAAAAATCATTANNAAACGCTT-CANTTATT-AAGCGAGATATATGTGAGATTGAAAAATTGCCCGGTTTTCCATGACGTTTTTTCTATTTCAAAAAANCGGAAGTNGCCGTCTTAA--TTTGCG--TAAGTCAATCGTTTTTAAAA--CTGTAAAAGAAACCTAATTTAGC-CGA---GTA-AATTTCATTTTCAA-AAACATATTAAATTTGAAA--TTTCG-TTTTTATATTTTGGATCACTTCCGGTTTACGAC--CCGG-A-AGT-CGTC-GGAC--GACAGCGACTAACCTTNATAGCAAANCTAAT--AA-GCACA---TCTCGA-GAT----NTANTCATCC-CTGAAAGTTT--CAAGACTTAAT--CTTCAAGC-GTTTAGCAAAAA---ATCGCGC-GGACAAAAT-GACATTT-AAA-AAACGGAAAATCGGCCC
Reference ( gi|1 ) : TAATGAAGAACACCAAA-TTTTGATACTACTTCCGGTT-TAG-----AAGTATCAATCTTTCCGATTAATG---AATTTTGGAAACCTTCAAGCACA---TATGTATATTACTTATGC--AACAAGCTT--ATGAAA------TGAAAAAA---TGT---ATTGTAGTAATAC------------TACTTCTCGGTGGACGGTACGGTAGTTGACGTGCAAT-CAAACTTTGA-AATGT--GT-TTCTTCATGTCAAAATTGATTGCAATCTAGTC-ATCCCCTTGA-AGGTT--TGAAGACT---CT---ATCTTT-A-CCATAAATG-AGAAAACATTCCGCACACTTTCGGCGGTTCTTTTAAAAAGC-AGCTG--TCCGG------AATCTT-CAAAGCCTCACAATTCACGACTAAAATCATCCACAATGAGCCGAGCA----GCGCAATGATTTTT-GCCAATTTCCAATGAAAACATGCCTGAATTTTCGTTAGCAACTGCTCCGGATTTGG--GAAAACTAACTTTCCGGA-TGGACATCT-T--AAGGACTCAAAAC-GTGTACGTGTAA-GC-CTAATTTTCTAAACACTTAAAA-CGAAAAAAAGTAAAAAAA--AAATTGCAATCTTTATAC-T-ACTTCCGGTGGACGACGGACAGGTG-ACCTGGAAAAGAAATTGAAATAGGTATTTC-T--TTC---TGGAATTATTGCCCA--ATCTA-TCATCACCTGAAAGTTTTGAAAGAC-CTAC-ATC---T----------TA--CATTCAGTTGTTATGAG-GAAA-TCATTCAAAGCAAA-ATCTCACTC--------T-----TA--AATCGGCCATATCCTCAACGACGCGGCAAGTAAAACTTTCTGT--AAA--TATTTGACGTTAGGC-CT-AGAGA-ATATCAAATGTTAATAATATGTGTAAAAAT-ATTGGAAAACACTTGCACTTATTTAGGCGCGA-ATAT-TGAGATTAAAAAATTGCCCAGTTTGCCATGACG-TTTTTC----TCAAAACGGCGAAGATTGCCGT-TTAAACTTCGCGGATAAGTCAAACTTTTCTAAAAA-CTGCAAAGACCACCTGATTTATCACAATATGCACAGTTTTATTTTCAACAAGCATATT--ACTTGAAAATTTTCAATTTTTATATTTTGGATCACTTCCGGTTTGCGAC--CCGG-ATAGT-CGTCAGGACCGAACAGCGGTTAACCTTTCTGGC--AGC-AAT--AA-GCACA---TCTCGA-GAT----ATACTCATTCTCTGAACGTTT--CAAGACTTAATTCCTTTAAGC-GTTTAGCAAAAA---ATCGCGT-GGACAAAATTGACATTT-AAA-AAACGGAAAATCGGCCCCCGTA
gi|3 : TAAAGAAAAACAAACAA-TGATGATACTCTTTCCGGTT-TAT-----ATGTATCAAATTT--CGATGGAC-----ATTTTCTAA--CTTAAAACA--------GTTTATTACT-ATTCTTAACA--TTTGGATAAAAGACAGTTGAAAAAAATCTAT---ATTTTAG----AT------------TACTTC-CGGTTAATGAT--TGTAGT-GACG-GCAAT--AGATTTT--------------------------AATTG-CTGCAATCCA-TC-ATCCCG--GA-ACGTT--TGAAGACT---CT---GCCTTTAA-GCATTAATG-AGAAA-----CCGCCCATCGTC--CACTTCTTTT--CATGC-A-CT---TCCGG------TATCTT-CAAAA-TTCAAAAT--ATGACTAAAAAC-TCCACAATGAA-CGTGCA----G-G-AATCATTTTT-CGAAATTTTTAATGGAAA-ACGCTT-AATGTTGGT--ACAACT-TTCTG--TTTGG--AAAAAC-GGCTTTTTAG--TGAAAATAT-T--CTGAATTCAGA
gi|2 : attaaacttgcatagataacacacaaagagattaaatttatcaattccaaacaacttccagttcttgtcatgcctttgaagttcataaaacgaatgaccgtatataccatattgagcacgcaggtatcatctctcaatgtttAATAAA-AATGCTGAA-TTGTCGTGCAACTTCCGGTTGTGGTGAAAAAG----AAACTATCCGG--GGTGGACAATTATAAGGAC--TCAAA-ACAGTCTATATGCACTATTT-CGA--AACA--CTT--A-AAAA------CGAAAAAA---AGT---A----AAAAATACATTTATTATGCCTACTTC-CGGTGGACG--ACGGAAGT-GACG-GCAAA-AAAA--TTGA-AATAA--AA-TTTTCTATTT--GAATT-ATTGCAATCTA-TC-ATCCC--TGA-AAGTT--TGAAGACC---TA---ATCTTC-ATTCATTTATT-AGAAAtagttatttcatatg
gi|6 : cgagttggcgacggtagtgagcggatcataaaattgtgagaaagtaagtttttcatgtagaagatgatagcgattttctatatcgctgagaggttgttgaacactgtgcttagaactataattatagatgtagaaatggcaaacgtgcagggttctgttcaaaagttagctgatttcggcaggagaatctttcagagctcaataagagactgaaatctcgcaactactgagcgttgtgcggaatcattttttgcaaattttcAAAAACACCAAATTTTTTATTCTACTTCCGGTttgatcgaacaaaatctaatttgaaatcggacatatctcacgaccggaagttattttggcaaaaatatttgatgttgctctagagaatattgatgttaaaaatatgtgtaaaaatcattgcaaacacttcaattattagcgagatatttgagattaaaaaatgccagttttctgacgttttttctcaaaaaaccggaagttg
gi|6 : gactcaaaataatctaacacactatttttaaacactcaaaatgaaaaaa--ATGAAA------AAAAAAAA---CACCAAATTTT--TTATTC------------TACTTC-CGGTGGACG--ACGGAAGA-GACG-GCAAT--AAA-TTTGA-AATAA--GT-AT-TTCATTTCTA--TTTGTTGCCATCTA-TC-ATATC--TGA-AAATT--TGAAGACCA--CT---ATCTTT-ggacgacggaagagacggcaataaatttgaaataagtatttcatttctatttgttgccatctatcatatctgaaaatttgaagaccactatctttttgcatttatgtaaaatcgctctaatgaaatctaatttgaaaaaagtaaaaatgtccatatctcacaactggaagtgagttttgcaaaaatatttaatgtttctctagatatgttagatgtccataatatgtgtaaaaat
gi|10 : gactcaaaataatctaacacactatttttaaacactcaaaC------------TATTT-TCGGTGGACG--ACGGAAG-TGACA-GCAATACAA---TTAA-AATGC--ATATTTTTTATTTT---ATTG-TTGCCACTTA-CC-ATCCC--TGA-AAGTT--TCAAAAAA---CA---ATCTTG-A---ATAAAttgcatttatgtaaaatcgctctaatgaaatctaatttgaaaaaagtaaaaatgtccatatctcacaactggaagtgagttttgcaaaaatatttaatgtttctctagatatgttagatgtccataatatgtgtaaaaat
gi|2 : ACGGTAGTGAGCGGATCAT-AAAATTGTGAGAAAGTAAGT-TT-TTCATGTAGAAGATGATAGCGATTT--TCTATATCGCTGAGAGGTTGTTGAACACTGTGCTTAGAACTAT-AATTATAGATGTAGAAA-----TGGCAAACGTGCAG-GGTTCTGTTCAAAAGTTAGCTGATTTCGGCAGGAGAATCTTTCAGAGCT---CAATAAGAGACTGAAATC--TCGCAACTA-CTGAGCGTTGTGCGGAATCATTTTTTGCAAATTTTCAATAAAAA--TGC-TGAATTGTCGT--GCAACT--TCCGGTTGTGGTGAAAAAGAAACTATCCGGGGTGGACAATTAT--AAGGACTCAAAACAGTCTATATGCA-----CTA--TTTCGAAACACTTAAAAACGAAAAAAAGTAAAAAA-------TACATTTATTATGCCT-ACTTCCGGTGGACGACGGA--AGTG-AC--GGCAAAAAAATTGAAATAAAATTTTC-T--ATT---TG-AATTATTGC--A--ATCTA-TCATC-CCTGAAAGTTT--GAAGAC-CTA--ATC---T----------T---CATTCATTTATTA-----GAAA-TTGATCGAA-CAAA-ATCTAATT---------T-----GA--AATCGGACATATC-TCA-CGAC-CGG-AAGTTA---TTTTGGC--AAAAATATTTGATGTT--GCTCT-AGAGA-ATATTGA-TGTTAAAAATATGTGTAAAAATCATT-GCAAACACTT-CAATTATT--AGCGAGATAT-T-TGAGATTAAAAAA-TG-CCAGTTTTC--TGACGTTTTTTC----TCAAAAAACCGGAAGTTGactgcatttggtaataatgcgtgcaataattaaattaaagatctctttaaat
gi|11 : cgagttggcgT--TGAAGACT---CT---ACTTTTAA-CCATAAACG-AGGAAA-----TGCATAACTTC--CGGTTTTTT----AAGC-A-CT---TCCGG------TATCTT-CAGAG-TTCAAAAT--ACATCTGAAATC-TCAACAATG
gi|16 : -CAAAGT-TCAAAATACAT--CTGAAAT-ATCCACAATGGG-CGTGTA----G-G-AATCATTTCT-A-CAAGTATCAATGCAAA
gi|3 : AAATTTC--GA-TGGACATTT-TCTAA---CTTAAAACAGTTTAT---TA-----CTA---TTCTTAACATTTGGA--TAAAAGACAGTTGAAAAA--AATCTATA--TTTTAGAT-T-ACTTCCGGTTAATGATTG-TA-GTG-AC--G-----------GCAATAGAT-TTT--------------AATTGCTG--CA--ATCCA-TCATC-CCGGAACGTTT--GAAGACTCTGC-CT----T----------TAAGCATTa
gi|6 : attaaacttgcatagataacacacaaagagattaaatttatcaattccaaacaacttccagttcttgtcatgcctttgaagttcataaaacgaatgaccgtatataccatattgagcacgcaggtatcatctctcaatgttttaaagaaaaacaaacaatgatgatactctttccggtttatatgtatcGACTCAAAA-----TA-ATCTAACACACTA--TTTTTAAACACTCAAAA-TGAAAAAAA---AAAACACCAAATT-----TTTTATTC-T-ACTTCCGGTGGACGACGGA-AGA-G-AC--GGCAATAAATTTGAAATAAGTATTTCAT--TTC---T--ATTTGTTGCC----ATCTA-TCAT-ATCTGAAAATTT--GAAGAC-C-ACTATCTTTT----------TG--CATTTA--TGT-------AAAA-TCGCTCTAA-TGAA-ATCTAATTTGAAAAAAGT-----AA--AAATGTCCATAT-CTC-ACAAC-TGG-AAGTGAG---TTTTGCAAAAA--TATTTAATGTT---T-CT-CTAGATATGTTAGATGTCCATAATATGTGTAAAAAT-aatgagaaaccgcccatcgtccacttcttttcatgcacttccggtatcttcaaaattcaaaatatgactaaaaactccacaatgaacgtgcaggaatcatttttcgaaatttttaatggaaaacgcttaatgttggtacaactttctgtttggaaaaacggctttttagtgaaaatattctgaattcagatagttatttcatatg
gi|5 : TCTTT-TAT-TCACT-CCGGTG--CGACGGA--AGTGCGCCAGGAACAAAACTT----TAG-TACCTA-A--TTCACACACAATT--TGTCCACGATATAATCATC-CCTGAAAGTTT----AGAC-C-A--ATC---T----------TA-------AACCGTTAGGAG-AAA
gi|10 : gaaacttacatgttctaggattattcagacataatttgaattctcgttC-T-ATTTTCGGTGGACGACGG--AAGTG-AC--AGCAATACAATTAAAATGCATATTTT-TTATTT---T---ATTGTTGCC----ACTTA-CCATC-CCTGAAAGTTTCAAAAAAC---A--ATC---TTGAATAAAACTG--CATTTGGTAATAATGCGTGCAA-TAATT-AAATTAAAGATCTC---T--------T-----TA--AATcctgtcggacaacatacattttaaacaaacggaaaatcggaccgctactgtatttttcacgacggaagtgtttttgaaaatgaaaaaaaatgatctagaacttatcccgaataagtttcctgaaagttttcatagaaagatccattagggcagaggttgaggtgtccattttccgagaaatcgcgtgcacaatcgtagagaaaaagagggacataactag
gi|4 : AATTCAGATAGTTATTTC-A--T-A---TGTAGTTGTTGTC----ATATA-TCATCAA-TGAACGTTTTGAA-GAC-TCAT--TC---C----------T---CATTCA-----TATATG-TAAACTCGTTTGAA-TAAA-ATATAATTT--------TAAGAGTAGAAATCGGTCACATCTTTGGC----CGG-AAGTAA---TTGTTGC--AAAAATATTTAAAATTA--C-TTTACAGA--TGTGTGATGTCAATAATGTGTGTGAAAATCATTACAAA-CGCTT-CACTTAT--AAGCG-AA-ATATGTGAGATTGAAAA-TTGCCAGATTTTTCA--ATG-TTTTTCTATTTTAAAA-AACGGAAATAGCCGTCTTAA--TTTGCG--TAAGTCAATCATTT-TAGAAATCTGTAAAAGAAACCTAATT----AGGGCATG-A---------TTTCAA-AAGCATA-A--ACTTGAAA--TTTCAGTT----TATTTT-GATCACTTCTGGT----GACTACTGGAATAGT-C----AGACGG--CAGAGACAAACTTTAAT-GCAAAGC-AAA--AA-GTA---------GA-GAT----TTATCCA-----TGAAGGTTT--CAAGATTT-ATTA--TCAACC-GTTTAGC-AAAA---ATCTCCC-AAAGAAAA-TGACACGA-AAATAAACGGAAAATCGG
gi|12 : tagtgaaaatattctgAAAG-AAA-ATCTCACT---------T-----TA--AATCGGCCATATC-TCA-CGAC-CGG-AAGTAAA---TTTTGT--AAAAATATTTGACGTTA-GC-CT-AGAGA-ATATC-AATGTTAATAATATGTG
gi|7 : TTTTTTAAAA--CTGTAAAAGAAACCTAATTTAGC-CAA---GTA-AATTTCATTT-----AAAAATATTAAATTTGAAA--TTTC--TGTTTAC-TTTTG--TCCCTTTCGG-TTACGAC--
gi|8 : aTTTTTTAAAA--CTGTAAAAGAAACCTAATTTAGC-CAA---GTA-AATTTCATTT-----AAAAATATTAAATTTGAAA--TTTC--TGTTTAC-TTTTG--TCCCTTTCGG-TTACGAC--aaaaccttttaacaaaggaaaagtcaagatctctcatccctgaaacttttacgattatatctttaagcgtttagcaaatctcgcacggacaaaatggcattcaaaaatctgaaaatcggcagtaactcgcgaccggaagcgattttcaaaacaagaaatgaggttttcgagtctatatt
gi|15 : aTCAA-AAGCATAA---ACTTGAAA--TTTCA--TTTCAT---TTGGATCACTTCCGGTAT-CGA---CCGG-A-AGT--GTC-GGAC--GACAGCGACTAACCTaaaaccttttaacaaaggaaaagtcaagatctctcatccctgaaacttttacgattatattttaagcgtttagcaaatctcgcacggacaaaatggcattcaaaaatctgaaaatcggcagtaactcgcgaccggaagcgatttcaaaacaagaaatgaggttttcgagtctatatt
gi|5 : CAGACATA----ATTTGAA--TTCTCGTTTCTTTTATT------CACT-CCGGT--GCGAC----GG-A-AGTGCGCCAGGA----ACA------AAACTTT--AGT--ACCTAATTCAC-ACACAATTTGTCCACGAT----ATAATCATCC-CTGAAAGTTT----AGACC-AAT--CTTAAACC-GTT-AGGAGAAA-----CCTGTCGGACAACAT--ACATTTTAAACAAACGGAAAATCGGACC
gi|3 : gaaacttacatgttctaggattattTCTATATTTTAGATTACTTCCGGTTgctactgtatttttcacgacggaagtgtttttgaaaatgaaaaaaaatgatctagaacttatcccgaataagtttcctgaaagttttcatagaaagatccattagggcagaggttgaggtgtccattttccgagaaatcgcgtgcacaatcgtagagaaaaagagggacataactag
gi|17 : attaaacttgcatagataacacacaaagagattaaatttatcaattccaaacaacttccagttcttgtcatgcctttgaagttcataaaacgaatgaccgtatataccatattgagcacgcaggtatcatctctcaatgttttaaagaaaaacaaacaatgatgatactctttccggtttatatgtatcaaatttcgatggacattttctaacttaaaacagtttattactattcttaacatttggataaaagacagttgaaaaaaaTATTTCG-ATTACTTCCGGTTT-CGA---CCGG-A-AGT--GTC-GGAC--GACAGCGACTAACCTTaatgattgtagtgacggcaatagattttaattgctgcaatccatcatcccggaacgtttgaagactctgcctttaagcattaatgagaaaccgcccatcgtccacttcttttcatgcacttccggtatcttcaaaattcaaaatatgactaaaaactccacaatgaacgtgcaggaatcatttttcgaaatttttaatggaaaacgcttaatgttggtacaactttctgtttggaaaaacggctttttagtgaaaatattctgaattcagatagttatttcatatg
gi|9 : T--AATGCACA---TCT-GA--ATGTCAATAGTC-----CTGAAAGTTTGACGAAAC--AATG---TTAAGCTGTTTGGGAGATA---CCTG-AC-GGACAAAAT-GACATTT--AA-AAACGTAAACTTGGCC
gi|18 : ccagtgacgaccggaagtgaagtacacaaaaatagtatgtc--AA-GCA-A---TCTCGA-GAT----ATA-TCAT-CTCTGAAAGTTT--CAAGACTTAATgtaactcgcttattttt
gi|14 : tgcacaA---TTTCGA-GAT----GTA-TCAT-CTCTGAAAGTTT--CAAGACGCAAT--CTTCAAGC-GTTTAG-AATAA---ATCGCGT-GGACAAAA-TGACATTT-AAA-AAct
gi|7 : tgcacaatataTCAA-GAT----CT-CTCATCC-CTGAAACTTT--TACGATT--ATATCTTTAAGC-GTTTAGCAAATC----TCGCAC-GGACAAAAT-GGCATTC-AAA-AATCTGAAAATCGGC
gi|8 : attttttaaaactgtaaaagaaacctaatttagccaagtaaatttcatttaaaaatattaaatttgaaatttctgtttacttttgtccctttcggttacgacaaaaccttttaacaaaggaaaagTCAA-GAT----CT-CTCATCC-CTGAAACTTT--TACGA-TTA--TATTTTAAGC-GTTTAGCAAATC----TCGCAC-GGACAAAAT-GGCATTC-AAA-AATCTGAAAATCGGCagtaactcgcgaccggaagcgattttcaaaacaagaaatgaggttttcgagtctatatt
gi|2 : attttttaaaactgtaaaagaaacctaatttagccaagtaaatttcatttaaaaatattaaatttgaaatttctgtttacttttgtccctttcggttacgacaaaaccttttaacaaaggaaaagTCATCC-CTGAAAGTTT--GAAGACCTAAT--CTTCATTC-ATTTATTAGAAATTGATCG-----AACAAAATCTA-ATTT-GAA-Aagtaactcgcgaccggaagcgatttcaaaacaagaaatgaggttttcgagtctatatt
gi|3 : cgagttggcgacggtagtgagcggatcataaaattgtgagaaagtaagtttttcatgtagaagatgatagcgattttctatatcgctgagaggttgttgaacactgtgcttagaactataattatagatgtagaaatggcaaacgtgcagggttctgttcaaaagttagctgatttcggcaggagaatctttcagagctcaataagagactgaaatctcgcaactactgagcgttgtgcggaatcattttttgcaaattttcaataaaaatgctgaattgtcgtgcaacttccggttgtggtgaaaaagaaactatccggggtggacaattataaggactcaaaacagtctatatgcactatttcgaaacacttaaaaacgaaaaaaagtaaaaaatacatttattatgcctacttccggtggacgacggaagtgacggcaaaaaaattgaaataaaattttctatttgaattattgcaatctaTCATCC-CGGAACGTTT--GAAGACTC--TGCCTTTAAGC-A-TTAATGAGAA---ACCGCtcggacatatctcacgaccggaagttattttggcaaaaatatttgatgttgctctagagaatattgatgttaaaaatatgtgtaaaaatcattgcaaacacttcaattattagcgagatatttgagattaaaaaatgccagttttctgacgttttttctcaaaaaaccggaagttg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): CTGACTTAAAACAGTCTATTACTAATCCCATCAACATTTGAATTTAAAAAAATAATTTAAAAAAATTGAGTATGATAATACTTCCGGTATTGACGGCAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3333 22 11 2 11 1 1 1 2222 77777777777777777777777777777777777 222 1 333 1111 111 111 33 1 2222222 11 55555555555555555555555555555 2 111111 111 1111 11 22222 222222 11 1 22 11 2222 333333333 11 11 11 33333333333 11 2222 3333333333333333 111 88888888888888888888888888888888888888888888 11 11111 555555555555555555 11 22 333 11 111 222 1 1111 444 11 111 4444444 1 1 22 22 1 1 1 222222222222 11 1 1 222222222222222222 9999999999999999999999999 11111 55555555555555555555555555555 222 11111 1111111 11 1
lowQualScore : 1 1111 44 1 1 3 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 6666 3 77 88 0 6 88 7 3 3 1111 7 77777777777777777777777777777777777 7 1 333 3 6 555 4 9999 777 777 5 44 0 5555555 1 1 11 8 8 44444444444444444444444444444 1 6 0 3 3 999999 111 6 6 2 4444 8 8 00 8 8 88888 0 1 8 888888 22 1 33 3 0 3 66 1 22 1 3 1 6 6 44 2222 6 0 0 222222222 11 3 11 44 22222222222 888 66 8 8 5 6 77 1111 99 6 7 1 3 6 1 4444444444444444 77 3 4 000 33333333333333333333333333333333333333333333 55 66666 2 999999999999999999 77 66 77 5 5 1 111 22 1 666 1 88 0 8 6 777 0 3 1 9999 7 666 0 44 6 0 333 6666666 4 0 1 5 77 77 4 0 0 0 3 999999999999 0 33 0 8 9 0 777 99 999999999999999999 4444444444444444444444444 77 55555 00000000000000000000000000000 5 1 666 4 66 77777 666 8 6666666 5 33 9 5 5 5 5 0
lowQualScore : . .... .. . . . .......................................................................................................... .... . .. .. . . .. . . . .... . ................................... . . ... . . ... . .... ... ... . .. . ....... . . .. . . ............................. . . . . . ...... ... . . . .... . . .. . . ..... . . . ...... .. . .. . . . .. . .. . . . . . .. .... . . . ......... .. . .. .. ........... ... .. . . . . .. .... .. . . . . . . ................ .. . . ... ............................................ .. ..... . .................. .. .. .. . . . ... .. . ... . .. . . . ... . . . .... . ... . .. . . ... ....... . . . . .. .. . . . . . ............ . .. . . . . ... .. .................. ......................... .. ..... ............................. . . ... . .. ..... ... . ....... . .. . . . . . .
lowQualScore : 0 5555 00 0 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0000 0 55 00 0 7 33 0 3 3 7777 3 33333333333333333333333333333333333 3 0 333 3 7 777 0 3333 555 555 0 55 0 5555555 0 0 00 0 0 22222222222222222222222222222 4 7 7 3 3 888888 777 7 7 5 2222 0 0 88 0 0 66666 6 0 0 888888 00 0 88 2 0 2 00 0 00 2 2 0 7 7 00 7777 7 8 8 444444444 00 8 00 00 22222222222 000 22 0 0 6 7 99 7777 22 7 5 4 0 0 7 4444444444444444 44 9 4 777 22222222222222222222222222222222222222222222 77 33333 1 000000000000000000 99 44 11 7 7 1 000 00 4 888 0 88 8 8 7 333 7 3 0 0000 3 000 7 77 7 7 000 3333333 0 7 0 0 55 55 0 5 0 0 2 555555555555 8 88 6 0 6 8 000 22 555555555555555555 6666666666666666666666666 99 66666 77777777777777777777777777777 0 0 999 4 11 11111 222 5 2222222 0 99 1 4 0 0 0 0
consensus : TAANGAAGAACANNNAATNNTGATACTNCTTCCGGTT-TATT--AGANGTATCAANCTTTCCGATNGACG---AATTTTNNAAANCTTNAAGCACAGTTTATGTATACTACTTATGCTTAACAAGCTTGGATGAAAGACAGTTGAAAAAANTCTGTATTNTAGTAATACTACTTCTCGGTTGACG--ACGGTAGT-GA-CG-G--CAATAAAACT-TGAGA---TG-GTTTTTTCATGT--AAAT--TGATTGCGAT---CTA-TCATCCC-T-GAANG--T-TTGAAGACT---CT---ACCTTTAACCATAAATG-AGAAA-----CCGCACANCTTC--CGG-TTCT-TTT---AA------GC--A-CT-TCCG-----GTATCTT-CAAAG-TTCAAAA-TAAC-GACTGAA---ATC-T-CCACAA----TGAG-CGT-GCA-G-G-AATCATTTTT-N--AAATTTTCAATGAAAA-ACG--CTTGAATNNTCGT--GCAACT-TTCCGGTTTTGGTGAAAAACAAACTTTCCGGA-TGGACATTT-T--AAGGACTCAAAACAGTCTATATGTA---CTA--TTTCTA--AACACTTAAAA-CGAAAAAAAGT--A----AAAAAAACTAC-A-TTT-TTATAC-TACTTCCGGTG--GACGACGG--AAGTGAC--GGCA-ANAAAATTGAAATAGATATTTC-T--T-----TCT-G-AATTGTTG-CCAATCTATCATC-CCTGAAAGTTT--GAAGAC-CTAC-ATC---TT-A-GCATTCAG------T-GTTACG-G--GAAAT--CGTTCGAA-CAAAATCTNACTT--------T------A--AATCGGCCGTATCCTC-GCGAC-CGG-AAGTGA---TTTTTGCAAAAATATTTGACGTTA-NTCTAGAGA-ATATTCGATGTTAATAATATGTGTAAAAATCATTGG-AAACGCTT-CACTTA-TTAAGCGAGATAT-T-TGAGATTAAAAAATTGCCCGGTTTTCCATGACGTTTTT-C--TCTCAAAAAA-CGGAAATTGCCGTCTTAAACTTCGCGGATAAGTCAANCNTTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCGAGTA-----AATTTCAT--TTTCAA-AAGCATATTAAACTTGAAA--TTTC-GTTT-TTATATTTTGGATCACTTCCGGTTT-CGAC--C-GGA-AGT-GTC-GGAC--GACAGCGACTAACCTTT-TAGCAAAGC-GAN--AAGCACA---TCTCGA-GATNT-ACTCA-TCCCTGAAAGTTT--CAAGACTTA-AT--CTTNAA-------GC-GTTTAGCAAAAACTCGCGCGGACAA-AA-TGACA-TTTAAA-AAACGGAAAATCGGCCC
Reference ( family-3404 ) : TAANGAAAAACGCCGAATTNTNATNCTACTTCCGGTTGTGNTGAAAANGTATCAAACTNTCCGGTGGGCGGACAATTNTNNGGACCTTNAAACACAGTCTATGTNCACTACTTACGNTTAACA--CTT--ATAAAA------CGAAAAAAN---ATATTTTAG--ATACTACTTC-CGGTGGACG--ACGGAAGT-GA-CG-G--CAATAAAATTTTGAAA---TGCGTTTTTTCATTT--AAAT--TGATTGCNAT---CTA-TCATCCCGT-GAAAG--T-TTGAAGACT---CT---ATCTTTA-TCATAAATG-AGAAA-----CCGCANANCTTC--CGG-TTCT-TTT---AA------GC--A-CT-TCCG-----GTATCTT-CAGAGCTTCAAAA-TAAC-GACTGAA---ATC-T-CCACAA----TGAG-CGT-GCG-G-G-AATCATTTTT-N--AAATTTTCAATGNAAA-ACG--CTTGAATNNTNGT--GCAACT-TTCCGGTTNTGGTGAAAAANAAACTTTCCGGG-TGGACATTT-T--AAGGACTCAAAACAGTCTATAT-TA---CTA--TTTCTA--AACACTTAAAA-CGAAAAAAAGT--A----AAAAAAACTAC-A-TTT-TTATAC-TACTTCCGGTG--GACGACGGA-AAGTGAC--GGCA-ANAAAATTGAAATAGATATTTC-T--T-----TCT-G-AATTGTTG-CCAATCTATCATC-CCTGAAAGTTT--GAAGAC-CTAC-ATC---TT---GCATTCA-------TCGTTATG-G--GAAAT--CGTTCGAA-TAAAATCTAATTT--------T-----TA--AATCGGCCATATCCTCGGCGAC-CGG-AAGTAAG--TTTTTGCAAAAATATTTGACGTTA-GCCTANAGA-ATGTTNGATGTCAATAATATGTGTAAAAATCATTANNAAACGCTT-CANTTA-TTAAGCGAGATATATGTGAGATTGAAAAATTGCCCGGTTTTCCATGACGTTTTTTCTATTTCAAAAAANCGGAAGTNGCCGTCTTAA--TTTGCG--TAAGTCAATCGTTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCGAGTA-----AATTTCAT--TTTCAA-AAACATATTAAATTTGAAA--TTTC-GTTT-TTATATTTTGGATCACTTCCGGTTTACGAC--CCGGA-AGTCGTC-GGAC--GACAGCGACTAACCTTNATAGCAAANCTAAT--AAGCACA---TCTCGA-GATNT-ANTCA-TCCCTGAAAGTTT--CAAGACTTA-AT--CTTCAA-------GC-GTTTAGCAAAAAATCGCGCGGACAA-AA-TGACA-TTTAAA-AAACGGAAAATCGGCCC
gi|1 : TAATGAAGAACACCAAATTTTGATACTACTTCCGGTT----T--AGAAGTATCAATCTTTCCGATTAATG---AATTTTGGAAACCTTCAAGCACA---TATGTATATTACTTATGC--AACAAGCTT--ATGAAA------TGAAAAAAT---GTATTGTAGTAATACTACTTCTCGGTGGACGGTACGGTAGTTGA-CGTG--CAATCAAACTTTGAAA---TGTGTTTCTTCATGTCAAAAT--TGATTGCAAT---CTAGTCATCCCCTTGAAGG--T-TTGAAGACT---CT---ATCTTTA-CCATAAATG-AGAAAACATTCCGCACACTTTCGGCGG-TTCT-TTTAAAAA------GC--AGCTGTCCG-----GAATCTT-CAAAGCCTCACAATTCAC-GACTAAA---ATCAT-CCACAA----TGAGCCGA-GCA-GCGCAATGATTTTTGC--CAATTTCCAATGAAAACATG--CCTGAATTTTCGTTAGCAACTGCTCCGGATTTG--GGAAAACTAACTTTCCGGA-TGGACATCT-T--AAGGACTCAAAAC-GTGTACGTGTAAGCCTAATTTTCTA--AACACTTAAAA-CGAAAAAAAGTAAA----AAAAAAATTGCAA-TCT-TTATAC-TACTTCCGGTG--GACGACGGACAGGTGACCTGGAA-AAGAAATTGAAATAGGTATTTC-T--T-----TCTGG-AATTATTGCCCAATCTATCATCACCTGAAAGTTTTGAAAGAC-CTAC-ATC---TT---ACATTCAG------TTGTTATGAG--GAAAT--CATTCAAAGCAAAATCTCACTC--------T-----TA--AATCGGCCATATCCTCAACGACGCGGCAAGTAAAACTTTCTGT--AAATATTTGACGTTAGGCCTAGAGA-ATATCAAATGTTAATAATATGTGTAAAAAT-ATTGGAAAACACTTGCACTTATTTAGGCGCGA-ATAT-TGAGATTAAAAAATTGCCCAGTTTGCCATGACGTTTT-----TCTCAAAACGGCGAAGATTGCCGT-TTAAACTTCGCGGATAAGTCAAACTTTTCTAAAAA-CTGCAAAGACCACCTGATTTATCACAATATGCACAGTTTTAT--TTTCAACAAGCATATT--ACTTGAAAATTTTCAATTT-TTATATTTTGGATCACTTCCGGTTTGCGAC--CCGGATAGTCGTCAGGACCGAACAGCGGTTAACCTTTCTGGC--AGC-AAT--AAGCACA---TCTCGA-GATAT-ACTCATTCTCTGAACGTTT--CAAGACTTA-ATTCCTTTAA-------GC-GTTTAGCAAAAAATCGCGTGGACAA-AATTGACA-TTTAAA-AAACGGAAAATCGGCCC
gi|10 : C-TATTTTCGGTG--GACGACGGA-A-GTGAC--AGCA-ATACAATTAAAATGCATATTTT-T--T-----ATT-T-TATTGTTG-CCACT-TACCATC-CCTGAAAGTTT--CAAAAA---ACAATC---TT---GAATccgta
gi|10 : CA-TCCCTGAAAGTTT--CAAAAAACA-AT--CTTGAATAAAACTGC-ATTTGGTAATAA--TGCGTG--CAATAA-TTAAA--TTAAA-GAaaaactgcatttggtaataatgcgtgcaataattaaattaaagatctctttaaat
gi|11 : ctattttcggtggacgacggaagtgacagcaatacaattaaaatgcatattttttattttattgttgccacttac-TTGAAGACT---CT---ACTTTTAACCATAAACG-AGGAA-----ATGCATAACTTC--CGG-TT-T-TTT---AA------GC--A-CT-TCCG-----GTATCTT-CAGAG-TTCAAAA-T-AC-ATCTGAA---ATC-T-CAACAA----TGtctctttaaat
gi|12 : AA-GAAAATCTCACTT--------T------A--AATCGGCCATATC-TCA-CGAC-CGG-AAGTAAA--TTTT-GTAAAAATATTTGACGTTA-GCCTAGAGA-ATA-TCAATGTTAATAATATGTG
gi|13 : aGACTTAAAACAGTC--TAT-TA---CTA--ATCCCATCAACATTTGAAT-TTAAAAAAA-T--AATTTAAAAAAATTG--A-GTA-TGATAA-TACTTCCGGTATTGACGGC
gi|14 : ctA---TTTCGA-GATGT-A-TCA-TCTCTGAAAGTTT--CAAGACGCA-AT--CTTCAA-------GC-GTTTAG-AATAAATCGCGTGGACAA-AA-TGACA-TTTAAA-AAaat
gi|15 : tgcacaatataTCAA-AAGCATA---AACTTGAAA--TTTC-ATTT-C---ATTT-GGATCACTTCCGGTAT-CGAC--C-GGA-AGT-GTC-GGAC--GACAGCGACTAACCT
gi|16 : -CAAAG-TTCAAAA-TA-C-ATCTGAA---ATA-T-CCACAA----TGGG-CGT-GTA-G-G-AATCATTTCT-A--CAAGTATCAATGCAAA-A
gi|17 : TATTTCG-ATTACTTCCGGTTT-CGAC--C-GGA-AGT-GTC-GGAC--GACAGCGACTAACCTT
gi|18 : --AAGCA-A---TCTCGA-GATAT-A-TCA-TCTCTGAAAGTTT--CAAGACTTA-AT--CT
gi|2 : tgcacaGTTGGCG--ACGGTAGT-GAGCG-GATCA-TAAAATTGTGAGAAAGTAAGTTTTT-CATGT--AGAAGATGATAGCGATTTTCTA-T-ATCGC-T-GAGAGGTTGTTGAACACTGTGCTTAGAACTATAATTATAGATGTAGAAA-----TGGCAAACGTGC--AGGGTTCTGTTC---AAAAGTTAGCTGA-TT-TCGGCAGGAGAATCTTTCAGAGCTC---AA-TAAGAGACTGAA---ATC-T-C-GCAACTACTGAG-CGTTGTGCG-G-AATCATTTTT-TGCAAATTTTCAAT-AAAA-ATG--CT-GAATTGTCGT--GCAACT-T-CCGGTTGTGGTGAAAAAGAAACTATCCGGGGTGGACAATTAT--AAGGACTCAAAACAGTCTATATGCA---CTA--TTTCGA--AACACTTAAAAACGAAAAAAAGT--A----AAAAA---TAC-A-TTTATTATGCCTACTTCCGGTG--GACGACGG--AAGTGAC--GGCA-AAAAAATTGAAATAAAATTTTC-T--A-----TTT-G-AATTATTG--CAATCTATCATC-CCTGAAAGTTT--GAAGAC-CTA--ATC---TT----CATTCA-------T--TTATT-A--GAAAT--TGATCGAA-CAAAATCTAA-TT--------T-----GA--AATCGGACATAT-CTC-ACGAC-CGG-AAGTTA---TTTTGGCAAAAATATTTGATGTTG-CTCTAGAGA-ATATT-GATGTTAAAAATATGTGTAAAAATCATT-GCAAACACTT-CAATTA-TT-AGCGAGATAT-T-TGAGATTAAAAAA-TG-CCAGTTTTC--TGACGTTTTTTC----TCAAAAAACCGGAAGTTG
gi|3 : cgaACAACTTC--CAG-TTCT-TGT------------C--A--------------TGCCTT-TGAAG-TTCATAA--AAC-GAATGACCGTATA-TACCATAT----TGAG-CAC-GCA-G-G-TATCATCTCT-C--AATGTTTTAAAGAAAA-ACAAAC---AATGATGAT--ACT-CT-TTCCGGTTTATATGTAT--CAAA-TTTC--GA-TGGACATTT-TCTAA---CTTAAAACAGTTTAT---TA---CTA--TT-CTT--AACATTTGGA--TAAAAGACAGTTGA----AAAAAATCTAT-A-TTT-T-AGAT-TACTTCCGGTT--AATGATTGT-A-GTGAC--GGCA-A-----------TAGAT------T--T-----T-----AATTGCTG-C-AATCCATCATC-CCGGAACGTTT--GAAGACTCTGC---C---TTTAAGCATT-A------------ATG-A--GAAAC--CG
gi|3 : attaaacttgcatagataacacacaaagagattaaatttatcaattccaaTAAAGAAAAACAAACAATGATGATACTCTTTCCGGTT-TAT-----ATGTATCAAATTT--CGATGGAC-----ATTTTCT--AACTTAAAACA--GTTTAT---TACTATT----CTTAACA--TTTGGATAAAAGACAGTTGAAAAAAATCTATATTTTAG--AT--TACTTC-CGGTTAATG--ATTGTAGT-GA-CG-G--CAATAGA------------------TTTT--------AAT--TG-CTGCAAT---CCA-TCATCCCG--GAACG--T-TTGAAGACT---CT---GCCTTTAAGCATTAATG-AGAAA-----CCGCCCATCGTC--CAC-TTCT-TTT---CAT-----GC--A-CT-TCCG-----GTATCTT-CAAAA-TTCAAAA-TA-T-GACTAAA---AAC-T-CCACAA----TGAA-CGT-GCA-G-G-AATCATTTTTCG--AAATTTTTAATGGAAA-ACG--CTT-AATGTTGGT--ACAACT-TTCTG--TTTG--GAAAAAcccatcgtccacttcttttcatgcacttccggtatcttcaaaattcaaaatatgactaaaaactccacaatgaacgtgcaggaatcatttttcgaaatttttaatggaaaacgcttaatgttggtacaactttctgtttggaaaaacggctttttagtgaaaatattctgaattcagatagttatttcatatg
gi|4 : attaaacttgcatagataacacacaaagagattaaatttatcaattccaaacaacttccagttcttgtcatgcctttgaagttcataaaacgaatgaccgtatataccatattgagcacgcaggtatcatctctcaatgtttAATTCAGATAGTTATTTC-A--T------AT-GTAGTTGTTG-TCA-TATATCATC-AATGAACGTTTT-GAAGAC-TCAT--TC---CT----CATTCA-------TA--TATG-T--AAACT--CGTTTGAA-TAAAATATAATTT--------TAAGAGTAGAAATCGGTCACATCTTTGGC----CGG-AAGTAA---TTGTTGCAAAAATATTTAAAATTA-CTTTACAGA--TGTGTGATGTCAATAATGTGTGTGAAAATCATTAC-AAACGCTT-CACTTA-T-AAGCGAAATAT--GTGAGATTGAAAA-TTGCCAGATTTTTCA--ATGTTTTT-CTATTTTAAAAAA-CGGAAATAGCCGTCTTAA--TTTGCG--TAAGTCAATCATTTTA-GAAATCTGTAAAAGAAACCTAA-TTAG--GG-------------CATGATTTCAA-AAGCA---TAAACTTGAAA--TTTCAGTT-----TATTTT-GATCACTTCTGGT----GACTACTGGA-A-TAGTC-AGAC--GGCAGAGACAAACTTTAAT-GCAAAGC-AAA--AAGTA---------GA-GATTT-----A-TCCATGAAGGTTT--CAAGATTT--AT--TATCAA-------CC-GTTTAGC-AAAAATCTCCCAAAGAA-AA-TGACA-CGAAAATAAACGGAAAATCGGcggctttttagtgaaaatattctgaattcagatagttatttcatatg
gi|5 : tagtgaaaatattctgAATTTGAAT--TCTC-GTTTCTTTTATT------CACT-CCGGT--GCGAC----GGA-AGT-------GC--GCCAGGAACAAAACTT--TAGTA--CCTAATTCACACACAATTTGTCCACGATAT-AATCA-TCCCTGAAAGTTT----AGAC-CA-AT--CTTAAA-------CC-G-TTAGGAGAAACCTGT-CGGACAA-CA-T-ACATTTTAAACAAACGGAAAATCGGACC
gi|6 : gaaacttacatgttctaggattattcagacatGACTCAAAATAATCTA-ACACA---CTA--TTTTTA--AACACTCAAAA-TGAAAAA------A----AAAAACACCAA-ATTTT-TTATTC-TACTTCCGGTG--GACGACGG--AAGAGAC--GGCA-ATAAATTTGAAATAAGTATTTCAT--T-----TCT---ATTTGTTG-CC-ATCTATCATA-TCTGAAAATTT--GAAGAC-C-ACTATCTTTTT---GCAT-------------TTATG-T--AAAAT--CGCTCTAA-TGAAATCTAATTTGAAAAAAGT-----AA--AAATGTCCATAT-CTC-ACAAC-TGG-AAGTGAG---TTTTGCAAAAATATTTAATGTT---TCTCTAGATATGTTAGATGTCCATAATATGTGTAAAAATgctactgtatttttcacgacggaagtgtttttgaaaatgaaaaaaaatgatctagaacttatcccgaataagtttcctgaaagttttcatagaaagatccattagggcagaggttgaggtgtccattttccgagaaatcgcgtgcacaatcgtagagaaaaagagggacataactag
gi|7 : TTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCAAGTA-----AATTTCAT--TT--AA-AA--ATATTAAATTTGAAA--TTTC--TGT-TTAC-TTTTG--TCCCTTTCGGTT------------------------AC--GACAA-----AACCTTT-TAACAAAG--GAA--AAG---------TCAA-GATCT--CTCA-TCCCTGAAACTTT--TACGA-TTATAT--CTTTAA-------GC-GTTTAGC-AAATCTCGCACGGACAA-AA-TGGCA-TTCAAA-AATCTGAAAATCGGC
gi|7 : atATCTCTCATC-CCTGAAACTTT--TACGA--TTAT-ATC---TTTAAGCGTTTAGCAAATCTCG-CACG-GACAAAATGGCATTCA----AAAATCTGA------------------A--AATCGGCAGTA-ACTC-GCGAC-CGG-AAGCGA---TTTT--CAAAAagtaactcgcgaccggaagcgattttcaaaacaagaaatgaggttttcgagtctatatt
gi|8 : attttttaaaactgtaaaagaaacctaatttagccaagtaaatttcatttaaaaatattaaatttgaaatttctgtttacttttgtccctttcggttacgacaaaaccttttaacaaaggaaaagtcaagTTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCAAGTA-----AATTTCAT--TT--AA-AA--ATATTAAATTTGAAA--TTTC--TGT-TTAC-TTTTG--TCCCTTTCGGTT------------------------AC--GACAA-----AACCTTT-TAACAAAG--GAA--AAG---------TCAA-GATCT--CTCA-TCCCTGAAACTTT--TACGA-TTATAT---TTTAA-------GC-GTTTAGC-AAATCTCGCACGGACAA-AA-TGGCA-TTCAAA-AATCTGAAAATCGGCcaagaaatgaggttttcgagtctatatt
gi|8 : atATCTCTCATC-CCTGAAACTTT--TACGA--TTAT-ATT---TTAA-GCGTTTAGCAAATCTCG-CACG-GACAAAATGGCATTCA----AAAATCTGA------------------A--AATCGGCAGTA-ACTC-GCGAC-CGG-AAGCGA---TTT---CAAAAagtaactcgcgaccggaagcgatttcaaaacaagaaatgaggttttcgagtctatatt
gi|9 : attttttaaaactgtaaaagaaacctaatttagccaagtaaatttcatttaaaaatattaaatttgaaatttctgtttacttttgtccctttcggttacgacaaaaccttttaacaaaggaaaagtcaagCCAGTG---ACGACCGG-AAGTGA---AGTACACAAAA-----ATAG-TATGTC-TAATGCACATCT-G-AAT----G-TCAAT-----AGT-CCTGAAAGTTT--GACGAcaagaaatgaggttttcgagtctatatt
gi|9 : ATAGTATGTCTAAT----GCACA---TCT-GA--ATGTCAATAG-TCC-TGAAAGTTTGACGAAAC--A-AT--GTT-AA-------GCTGTTTGGGAGATACCTG-ACGGACAA-AA-TGACA-TTT-AA-AAACGTAAACTTGGCCaacaatgttaagctgtttgggagatacctgacggacaaaatgacatttaaaaacgtaaacttggccgtaactcgcttattttt
Alignments
lowQualScore : 6666 11 11 22 11 222 222 3333333 11 11 222222 222 2222 1 11 1 1 66666666666666666666666666666666666666666666666 222 1 11 1 11 222222 1 2222222 11111 55555555555555555555555555555 2222 111 1111 111 22222 222222 11 1 22 1 2222 222222222 11 11 444444444 11 11 3333333333333333 111 999999999999999999999999999999999999999999999999999999 11 11 1111 333333333333333333333333 111 111 1 22 1 22 1 111 222 11 1 222 1 11 11 1 1 222222222222 11 1 1 111 11 22222222222222222222 33333333333333333333333 11111 11 111 11 222222222 222 11111 1
lowQualScore : 1 333 22 1 0000 1 1 88 1 88 22 33 1 77 111 111 2222222 88 77 999999 666 1 4444 5 88 3 3 00000000000000000000000000000000000000000000000 7 0 333 3 6 88 3 1 33 888888 3 0 0 5555555 3 1 0 22222 8 44444444444444444444444444444 1 6 6 6 8888 111 6 6 2 4444 8 444 0 8 8 88888 0 8 888888 22 2 33 3 0 3 66 22 1 3 6 6 3 2222 6 0 666666666 11 3 11 8 6 000000000 888 66 8 33 6 33 5 77 77 5 7 1 3 6 1 4444444444444444 77 4 3 4 000 333333333333333333333333333333333333333333333333333333 33 1 66 1 33 4 5 1111 1 666666666666666666666666 999 5 5 5 0 000 55 1 99 11 0 3 6 00 0 3 00 7 7 3 7 7 6 0 333 555 11 3 333 5 88 88 1 1 0 0 3 999999999999 0 33 0 8 0 111 66 55555555555555555555 66666666666666666666666 77 55555 99 222 6 44 1 999999999 5 1 666 5 777 55555 888 6 5 4 66 7 5 5 1
lowQualScore : . ... .. . .... . . .. . .. .. .. . .. ... ... ....... .. .. ...... ... . .... . .. . . ............................................... . . ... . . .. . . .. ...... . . . ....... . . . ..... . ............................. . . . . .... ... . . . .... . ... . . . ..... . . ...... .. . .. . . . .. .. . . . . . .... . . ......... .. . .. . . ......... ... .. . .. . .. . .. .. . . . . . . ................ .. . . . ... ...................................................... .. . .. . .. . . .... . ........................ ... . . . . ... .. . .. .. . . . .. . . .. . . . . . . . ... ... .. . ... . .. .. . . . . . ............ . .. . . . ... .. .................... ....................... .. ..... .. ... . .. . ......... . . ... . ... ..... ... . . . .. . . . .
lowQualScore : 0 000 00 0 5555 0 0 00 0 00 00 55 0 55 000 000 5555555 00 55 000000 000 0 5555 5 33 3 3 00000000000000000000000000000000000000000000000 3 7 333 3 7 33 3 0 88 888888 2 2 0 5555555 2 0 6 00000 0 22222222222222222222222222222 4 7 7 7 5555 777 7 7 5 2222 0 000 8 0 0 66666 6 0 888888 00 5 88 2 0 2 00 00 2 2 7 7 3 7777 7 8 222222222 00 8 00 0 0 666666666 000 22 0 66 7 77 7 99 99 7 5 4 0 0 7 4444444444444444 44 6 9 4 777 777777777777777777777777777777777777777777777777777777 88 1 99 1 77 4 3 7777 7 444444444444444444444444 555 0 7 7 4 000 00 4 00 66 8 2 7 00 7 3 77 3 3 3 3 3 7 7 000 000 00 3 333 0 00 00 0 0 0 0 2 555555555555 8 88 6 0 0 333 99 22222222222222222222 88888888888888888888888 99 66666 00 444 0 66 0 111111111 0 0 222 0 111 66666 222 6 7 3 00 6 7 7 4
consensus : TAANGAAGAACANNNAATNNTGATACTNCTTCCGGTTTAT--GANGTATCAANCTTTCCGATNGACGAATTTTNNAAACCTTNAAGCACAGTTTATGTATACTACTTATGCTTAACAAGCTTGGATGAAAGACAGTTGAAAAAAATCTGTATTNTAGTAATACTACTTCTCGGTTGACG--ACGGTAG-TGA-CG-G--CAATAAAAC-T-TGAGA-G-GT---TTTTTCATGT--AAAT--TGATTGCGAT---CTA-TCATCCC--TGA-AGGTT--TGAAGACTCTGC------CTTTAACCATAAATG-AGAAA-----CCGCACAACTTC--C--GGTTCT-TTT---AA------GC--A-CT-TCCG-----GTATCTT-CAAAG-TTCAA-AA-TAACGACTGAA---ATC-T-CCACAA----TGAG-CGT---GCAG-G-AATCATTTTT-N--AAATTTTCAATGAAAA-ACG--CTTGAATNNTCGT--GCAACT-TTCCGGTTTTGGTGAAAAACAAACTTTCCGGA-TGGACATTT-T--AAGGACTCAAAACAGTCTATACGTA---CTA--TTTCTA--AACACTT-AAAACGAAAAAAAGT--A----AAAAAAACTAC-ATTT-TT-ATA-CTACTTCCGGTGGACGAC-GG--AAGTGAC--GGCA-ANAAAATTGAAATAGATATTTC-T--T-----TCT-G-AATTGTTG-CCAATCTATCATC-CCTGAAAGTTT--GAAGAC-C--TAC-ATCTT--A---------GCATTCAG----TGTT--A---CG-GG--AAAT--CGTT--CGAA-CAAA-ATCTGAC-T-TTAA--------A---------T-----CGGCCGTATCCTC-GCGAC-CGG-AAGTGA---TTTTTGCAAAAATATTTGACGTTA-CTCTAGAGAATATTCGATGTTAATAATATGTGTAAAAATCATTGC-AAACGCTT-CACTTA-TTAAGCGAGATAT-TTGAGATTAAAAAATTGCCCGGTTTTCCATGACGTTTTTC--TCTCAAAAAA-CGG---AAATTGCCGTCTTAAACTTCGCGGATAAGTCAANCNTTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCGAGTA-----AATTTCAT--TTTCAA-AAGCATATTAAACTTGAAAA-TTTC-GTTT-CT-TATTTTGGA--TCACTTCCGGTN--CGA-CCGGA-AGT-GTC-GGAC--GACAGCGACTAACCTTT--TA--GCAAAGCGAAAAGCACA---TCTCGA-GATNT-ACTCA-TCCCTGAAAGTTT--CAAGACTTA-AT--CTTTAAGC-GTTTAGCAAAAACTCGCGCGGACAAAA-TGACA-TTTAAA-AAACGGAAAATCGGCCC
Reference ( family-3404 ) : TAANGAAGAACANNNAATNNTGATACTNCTTCCGGTTTATTAGANGTATCAANCTTTCCGATNGACGAATTTTNNAAANCTTNAAGCACAGTTTATGTATACTACTTATGCTTAACAAGCTTGGATGAAAGACAGTTGAAAAAANTCTGTATTNTAGTAATACTACTTCTCGGTTGACG--ACGGTAG-TGA-CG-G--CAATAAAAC-T-TGAGATG-GT---TTTTTCATGT--AAAT--TGATTGCGAT---CTA-TCATCCC--TGA-ANGTT--TGAAGACTCTAC------CTTTAACCATAAATG-AGAAA-----CCGCACANCTTC--C--GGTTCT-TTT---AA------GC--A-CT-TCCG-----GTATCTT-CAAAG-TTCAA-AA-TAACGACTGAA---ATC-T-CCACAA----TGAG-CGT---GCAG-G-AATCATTTTT-N--AAATTTTCAATGAAAA-ACG--CTTGAATNNTCGT--GCAACT-TTCCGGTTTTGGTGAAAAACAAACTTTCCGGA-TGGACATTT-T--AAGGACTCAAAACAGTCTATATGTA---CTA--TTTCTA--AACACTT-AAAACGAAAAAAAGT--A----AAAAAAACTAC-ATTT-TT-ATA-CTACTTCCGGTGGACGAC-GG--AAGTGAC--GGCA-ANAAAATTGAAATAGATATTTC-T--T-----TCT-G-AATTGTTG-CCAATCTATCATC-CCTGAAAGTTT--GAAGAC-C--TAC-ATCTT--A---------GCATTCAG----TGTT--A---CG-GG--AAAT--CGTT--CGAA-CAAA-ATCTNAC-T-TTAA--------A---------T-----CGGCCGTATCCTC-GCGAC-CGG-AAGTGA---TTTTTGCAAAAATATTTGACGTTA-NTCTAGAGAATATTCGATGTTAATAATATGTGTAAAAATCATTGG-AAACGCTT-CACTTA-TTAAGCGAGATAT-TTGAGATTAAAAAATTGCCCGGTTTTCCATGACGTTTTTC--TCTCAAAAAA-CGG---AAATTGCCGTCTTAAACTTCGCGGATAAGTCAANCNTTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCGAGTA-----AATTTCAT--TTTCAA-AAGCATATTAAACTTGAAA--TTTC-GTTT-TTATATTTTGGA--TCACTTCCGGTTT-CGA-CCGGA-AGT-GTC-GGAC--GACAGCGACTAACCTTT--TA--GCAAAGCGANAAGCACA---TCTCGA-GATNT-ACTCA-TCCCTGAAAGTTT--CAAGACTTA-AT--CTTNAAGC-GTTTAGCAAAAACTCGCGCGGACAAAA-TGACA-TTTAAA-AAACGGAAAATCGGCCC
gi|1 : TAATGAAGAACACCAAATTTTGATACTACTTCCGGTTTA---GAAGTATCAATCTTTCCGATTAATGAATTTTGGAAACCTTCAAGCACA---TATGTATATTACTTATGC--AACAAGCTT--ATGAAA------TGAAAAAA---TGTATTGTAGTAATACTACTTCTCGGTGGACGGTACGGTAGTTGA-CGTG--CAATCAAACTT-TGAAATGTGT---TTCTTCATGTCAAAAT--TGATTGCAAT---CTAGTCATCCCCTTGA-AGGTT--TGAAGACTCTAT------CTTT-ACCATAAATG-AGAAAACATTCCGCACACTTTCGGC--GGTTCT-TTTAAAAA------GC--AGCTGTCCG-----GAATCTT-CAAAGCCTCAC-AATTCACGACTAAA---ATCAT-CCACAA----TGAGCCGA---GCAGCGCAATGATTTTTGC--CAATTTCCAATGAAAACATG--CCTGAATTTTCGTTAGCAACTGCTCCGGATTTG--GGAAAACTAACTTTCCGGA-TGGACATCT-T--AAGGACTCAAAAC-GTGTACGTGTAAGCCTAATTTTCTA--AACACTT-AAAACGAAAAAAAGTAAA----AAAAAAATTGCAATCT-TT-ATA-CTACTTCCGGTGGACGAC-GGACAGGTGACCTGGAA-AAGAAATTGAAATAGGTATTTC-T--T-----TCTGG-AATTATTGCCCAATCTATCATCACCTGAAAGTTTTGAAAGAC-C--TAC-ATCTT--A----------CATTCAGT---TGTT--A---TGAGG--AAAT--CATT--CAAAGCAAA-ATCTCAC-TCTTAA--------A---------T-----CGGCCATATCCTCAACGACGCGGCAAGTAAAACTTTCTGT--AAATATTTGACGTTAGGCCTAGAGAATATCAAATGTTAATAATATGTGTAAAAAT-ATTGGAAAACACTTGCACTTATTTAGGCGCGA-ATATTGAGATTAAAAAATTGCCCAGTTTGCCATGACGTTTTTC--TC----AAAA-CGGCGAAGATTGCCGT-TTAAACTTCGCGGATAAGTCAAACTTTTCTAAAAA-CTGCAAAGACCACCTGATTTATCACAATATGCACAGTTTTAT--TTTCAACAAGCATATT--ACTTGAAAATTTTCAATTT-TTATATTTTGGA--TCACTTCCGGTTTGCGACCCGGATAGTCGTCAGGACCGAACAGCGGTTAACCTTTC-TG--GC--AGCAATAAGCACA---TCTCGA-GATAT-ACTCATTCTCTGAACGTTT--CAAGACTTA-ATTCCTTTAAGC-GTTTAGCAAAAAATCGCGTGGACAAAATTGACA-TTTAAA-AAACGGAAAATCGGCCC
gi|10 : -CTATTTTCGGTGGACGAC-GG--AAGTGAC--AGCA-ATACAATTAAAATGCATATTTT-T--T-----ATT-T-TATTGTTG-CCACT-TACCATC-CCTGAAAGTTT--CAAAAA-----ACAATCTT--GAATAAAACTGCATTTGG----TAAT--AATGCG-TG--CAAT--AATT--AAAT-TAAAGATCT--C-T-TTAA--------A---------T-----ccgta
gi|11 : T--TGAAGACTCTAC------TTTTAACCATAAACG-AGGAA-----ATGCATAACTTC--C--GGTT-T-TTT---AA------GC--A-CT-TCCG-----GTATCTT-CAGAG-TTCAA-AA-T-ACATCTGAA---ATC-T-CAACAA----TG
gi|12 : AA-GAAA-ATCTCAC-T-TTAA--------A---------T-----CGGCCATATC-TC-ACGAC-CGG-AAGTAA---ATTTTGTAAAAATATTTGACGTTA-GCCTAGAGAATA-TCAATGTTAATAATATGTG
gi|13 : aGACTTAAAACAGTCTAT---TA---CTA--ATCCCATCAACATTT-GAATTTAAAAAAA-T--AATTTAAAAAAATTG--AGTA-TG-ATA-ATACTTCCGGT-------------ATTGAC--GGCA-A
gi|14 : ctA---TTTCGA-GATGT-A-TCA-TCTCTGAAAGTTT--CAAGACGCA-AT--CTTCAAGC-GTTTAG-AATAAATCGCGTGGACAAAA-TGACA-TTTAAA-AAt
gi|15 : tgcacaatataTCAA-AAGCATA---AACTTGAAA--TTTC-ATTT-C---ATTT-GGA--TCACTTCCGGTAT-CGA-CCGGA-AGT-GTC-GGAC--GACAGCGACTAACCT
gi|16 : -CAAAG-TTCAA-AA-TA-CATCTGAA---ATA-T-CCACAA----TGGG-CGT---GTAG-G-AATCATTTCT-A--CAAGTATCAATGCAAA-A
gi|17 : TATTTCG-A--TTACTTCCGGTTT-CGA-CCGGA-AGT-GTC-GGAC--GACAGCGACTAACCTT
gi|18 : AAGCA-A---TCTCGA-GATAT-A-TCA-TCTCTGAAAGTTT--CAAGACTTA-AT--CT
gi|2 : tgcacaGTTGGCG--ACGGTAG-TGAGCG-GATCA-TAAAAT-TGTGAGAAA-GTAAGTTTTTCATGT--AGAAGATGATAGCGATTTTCTA-T-ATCGC--TGAGAGGTTGTTGAACACTGTGCTTAGAACTATAATTATAGATGTAGAAA-----TGGCA-AACGTG--CAGGGTTCTGTTC---AAAAGTTAGCTGA-TT-TCGGCAGGAGAATCTTTCAGAG-CTCAATAA-GA--GACTGAA---ATC-T-C-GCAACTACTGAG-CGTTGTGC-G-G-AATCATTTTT-TGCAAATTTTCAAT-AAAA-ATG--CT-GAATTGTCGT--GCAACT-T-CCGGTTGTGGTGAAAAAGAAACTATCCGGGGTGGACAATTAT--AAGGACTCAAAACAGTCTATATGCA---CTA--TTTCGA--AACACTTAAAAACGAAAAAAAGT--A----AAAAA---TAC-ATTTATT-ATGCCTACTTCCGGTGGACGAC-GG--AAGTGAC--GGCA-AAAAAATTGAAATAAAATTTTC-T--A-----TTT-G-AATTATTG--CAATCTATCATC-CCTGAAAGTTT--GAAGAC-C--TA--ATCTT-------------CATTCA-----T-TT--A---TT-AG--AAAT--TGAT--CGAA-CAAA-ATCTAAT-T-TGAA--------A---------T-----CGGACATAT-CTC-ACGAC-CGG-AAGTTA---TTTTGGCAAAAATATTTGATGTTG-CTCTAGAGAATATT-GATGTTAAAAATATGTGTAAAAATCATTGC-AAACACTT-CAATTA-TT-AGCGAGATAT-TTGAGATTAAAAAA-TG-CCAGTTTTC--TGACGTTTTT---TCTCAAAAAACCGG---AAGTTG
gi|3 : cgaACAACTTC--C--AGTTCT-TGT------------C--A--------------TGCCTT-TGAAG-TTCAT-AA--AACGAATGACCGTATA-TACCATAT----TGAG-CAC---GCAG-G-TATCATCTCT-C--AATGTTTTAAAGAAAA-ACAAAC---AATGATGAT--ACT-CT-TTCCGGTTTATATGTAT--CAAA-TTTC--GA-TGGACATTT-TCTAA---CTTAAAACAGTTTAT---TA---CTA--TT-CTT--AACATTT-GGA-TAAAAGACAGTTGA----AAAAAATCTAT-ATTT-T--AGA-TTACTTCCGGTTAATGAT-TG--TAGTGAC--GGCA-A-----------TAGAT------T--T-----T-----AATTGCTG-C-AATCCATCATC-CCGGAACGTTT--GAAGACTC--TGC-CTTTA--A---------GCATT
gi|3 : attaaacttgcatagataacacacaaagagattaaatttatcaattccaaTAAAGAAAAACAAACAATGATGATACTCTTTCCGGTTTAT---ATGTATCAAATTT--CGATGGAC--ATTTTCTAA--CTTAAA--ACAGTTTAT---TACTATT----CTTAACA--TTTGGATAAAAGACAGTTGAAAAAAATCTATATTTTAG----ATTACTTC-CGGTTAATG--ATTGTAG-TGA-CG-G--CAATA-------------G-AT---TTT----------AAT--TG-CTGCAAT---CCA-TCATCCC--GGA-ACGTT--TGAAGACTCTGC------CTTTAAGCATTAATG-AGAAA-----CCGCCCATCGTC--C--ACTTCT-TTT---CAT-----GC--A-CT-TCCG-----GTATCTT-CAAAA-TTCAA-AA-TA-TGACTAAA---AAC-T-CCACAA----TGAA-CGT---GCAG-G-AATCATTTTTCG--AAATTTTTAATGGAAA-ACG--CTT-AATGTTGGT--ACAACT-TTCTG--TTTG--GAAAAACaatgagaaaccgcccatcgtccacttcttttcatgcacttccggtatcttcaaaattcaaaatatgactaaaaactccacaatgaacgtgcaggaatcatttttcgaaatttttaatggaaaacgcttaatgttggtacaactttctgtttggaaaaacggctttttagtgaaaatattctgaattcagatagttatttcatatg
gi|4 : attaaacttgcatagataacacacaaagagattaaatttatcaattccaaacaacttccagttcttgtcatgcctttgaagttcataaaacgaatgaccgtatataccatattgagcacgcaggtatcatctctcaatgtttAATTCAGATAGTTATTTC-A--T------AT-GTAGTTGTTG-TCA-TATATCATC-AATGAACGTTTT-GAAGAC-T--CAT--TCCT-------------CATTCA-----TAT---A---TG-TA--AACT--CGTT--TGAA-TAAA-ATATAAT-T-TTAAGAGTAGAAA---------T-----CGGTCACATCTTT-G--GC-CGG-AAGTAA---TTGTTGCAAAAATATTTAAAATTA-CTTTACAGA-TGTGTGATGTCAATAATGTGTGTGAAAATCATTAC-AAACGCTT-CACTTA--TAAGCGAAATAT-GTGAGATT-GAAAATTGCCAGATTTTTCA--ATGTTTTTCTATTTTAAAAAA-CGG---AAATAGCCGTCTTAA--TTTGCG--TAAGTCAATCATTTTA-GAAATCTGTAAAAGAAACCTAA-TTAG--GG-------------CATGATTTCAA-AAGCA---TAAACTTGAAA--TTTCAGTT-----TATTTT-GA--TCACTTCTGGTGA-CTA-CTGGA-ATA-GTC-AGAC--GGCAGAGACAAAC--TT--TAATGCAAAGCAAAAAGTA---------GA-GATTT-----A-TCCATGAAGGTTT--CAAGATTT--AT--TATCAACC-GTTTAGCAAAAA-TCTCCCAAAGAAAA-TGACA-CGAAAATAAACGGAAAATCGGggctttttagtgaaaatattctgaattcagatagttatttcatatg
gi|5 : tagtgaaaatattctgAATTTGAAT--TCTC-GTTTCTTTTATT--------CACT-CCGGTG--CGA-C-GGA-AGT-G------C--GCCAGGAACAAAACTTTAGTA--CCTAATTCACA--CACAATTTGTCCACGATAT-AATCA-TCCCTGAAAGTTT----AGAC-CA-AT--CTTAAACC-G-TTAGGAGAAACCTGT-CGGACAACA-T-ACATTTTAAACAAACGGAAAATCGGACC
gi|6 : gaaacttacatgttctaggattattcagacatGACTCAAAATAATCTA-ACACA---CTA--TTTTTA--AACACTC-AAAATGAAAAAAA----------AAAACACCAA-ATTT-TTTATT-CTACTTCCGGTGGACGAC-GG--AAGAGAC--GGCA-ATAAATTTGAAATAAGTATTTCAT--T-----TCT---ATTTGTTG-CCA-TCTATCATA-TCTGAAAATTT--GAAGAC-CACTAT-CTTTT--T---------GCATTTA-----TGT-----------A--AAAT--CGCT--CTAA-TGAA-ATCTAAT-T-TGAA--------AAAAG-----TAAAAATGTCCATATC-TC-ACAAC-TGG-AAGTGA---GTTTTGCAAAAATATTTAATGTTT-CTCTAGAT-ATGTTAGATGTCCATAATATGTGTAAAAATgctactgtatttttcacgacggaagtgtttttgaaaatgaaaaaaaatgatctagaacttatcccgaataagtttcctgaaagttttcatagaaagatccattagggcagaggttgaggtgtccattttccgagaaatcgcgtgcacaatcgtagagaaaaagagggacataactag
gi|7 : TTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCAAGTA-----AATTTCAT--TT--AA-AA--ATATTAAATTTGAAA--TTTC--TGT-TTAC-TTTTG----TCCCTTTCGGTT----------------------AC--GACAA-----AACCTTT--TA--ACAAAG-GAAAAG---------TCAA-GATCT--CTCA-TCCCTGAAACTTT--TACGA-TTATAT--CTTTAAGC-GTTTAGCAAAT-CTCGCACGGACAAAA-TGGCA-TTCAAA-AATCTGAAAATCGGC
gi|7 : atATCTCTCATC-CCTGAAACTTT--TACGAT----TAT-ATCTTTAA---------GCGTTTAGCAAATCTCGCA---CG-GACAAAATGGCATT--CAAA----A-ATCTGA------AA--------A---------T-----CGGCAGTA-ACTC-GCGAC-CGG-AAGCGA---TTTT--CAAAAagtaactcgcgaccggaagcgattttcaaaacaagaaatgaggttttcgagtctatatt
gi|7 : attttttaaaactgtaaaagaaacctaatttagccaagtaaatttcatttaaaaatattaaatttgaaatttctgtttacttttgtccctttcggttacgacaaaaccttttaacaaaggaaaagtcaagATAT-AGACTCGAAAA-CCTC-ATTT-CT-TGTTTTGAAAATCGCTTCCGGTCG-CGA-caagaaatgaggttttcgagtctatatt
gi|8 : attttttaaaactgtaaaagaaacctaatttagccaagtaaatttcatttaaaaatattaaatttgaaatttctgtttacttttgtccctttcggttacgacaaaaccttttaacaaaggaaaagtcaagatctctcatccctgaaacttttacgattatatctttaagcgtttagcaaatctcgcacggacaaaatggcattcaaaaatctgaaaatcggcagtaacTTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCAAGTA-----AATTTCAT--TT--AA-AA--ATATTAAATTTGAAA--TTTC--TGT-TTAC-TTTTG----TCCCTTTCGGTT----------------------AC--GACAA-----AACCTTT--TA--ACAAAG-GAAAAG---------TCAA-GATCT--CTCA-TCCCTGAAACTTT--TACGA-TTATAT---TTTAAGC-GTTTAGC-AAATCTCGCACGGACAAAA-TGGCA-TTCAAA-AATCTGAAAATCGGCt
gi|8 : atATCTCTCATC-CCTGAAACTTT--TACGAT----TAT-ATTTT--AA--------GCGTTTAGCAAATCTCGCA---CG-GACAAAATGGCATT--CAAA----A-ATCTGA------AA--------A---------T-----CGGCAGTA-ACTC-GCGAC-CGG-AAGCGA---TTT---CAAAAagtaactcgcgaccggaagcgatttcaaaacaagaaatgaggttttcgagtctatatt
gi|8 : attttttaaaactgtaaaagaaacctaatttagccaagtaaatttcatttaaaaatattaaatttgaaatttctgtttacttttgtccctttcggttacgacaaaaccttttaacaaaggaaaagtcaagATAT-AGACTCGAAAA-CCTC-ATTT-CT-TGTTTTGAAA-TCGCTTCCGGTCG-CGA-caagaaatgaggttttcgagtctatatt
gi|9 : attttttaaaactgtaaaagaaacctaatttagccaagtaaatttcatttaaaaatattaaatttgaaatttctgtttacttttgtccctttcggttacgacaaaaccttttaacaaaggaaaagtcaagatctctcatccctgaaacttttacgattatattttaagcgtttagcaaatctcgcacggacaaaatggcattcaaaaatctgaaaatcggcagtaacCCAGTG-ACGACCGG--AAGTGA---AGTACACAAAA-----ATAG-TATGTC-TAATGCACATCT-G-AAT----G-TCAAT-----AGT-CCTGAAAGTTT--GACGAA-----ACAATGTTA-A---------GC----------TGTT------TG-GG--AGAT--ACCTGACGGA-CAAA-A--TGACAT-TTAA--------AAACGTAAACT-----TGGCCGTA-ACTC-GCt
gi|9 : GCACA---TCT-GA--ATGTCAATAG-TCC-TGAAAGTTTGACGAAAC--A-AT--GTT-AAGCTGTTTGGGAGATACCTG-ACGGACAAAA-TGACA-TTT-AA-AAACGTAAACTTGGCCttattttt
Alignments
lowQualScore : 33 11 11 11 11 222 222 3333333 11 11 222222 222 2222 1 11 1 1 77777777777777777777777777777777777777777777777 222 1 11 1 11 222222 1 2222222 11111 55555555555555555555555555555 2222 111 1111 111 22222 222222 11 1 22 1 2222 222222222 11 11 444444444 11 11 3333333333333333 111 999999999999999999999999999999999999999999999999999999 11 11 111111 333333333333333333333333 111 111 11 1 1 1 22 1 111 222 11 1 222 1 11 11 1 1 222222222222 11 1 1 111 11 111111 22222 44444444444444444444444 11111 11 111 11 222222222 222 11111 111 1
lowQualScore : 1 333 22 1 00 1 1 88 1 88 22 88 1 77 111 111 2222222 88 77 999999 111 1 4444 5 88 3 3 99999999999999999999999999999999999999999999999 7 0 333 3 6 88 3 33 888888 3 0 0 5555555 3 1 0 22222 8 44444444444444444444444444444 1 6 6 6 8888 111 6 6 2 4444 8 444 0 8 8 88888 0 8 888888 22 2 33 3 0 3 66 22 1 3 6 6 3 2222 6 0 999999999 11 3 11 8 6 000000000 888 66 8 33 6 33 5 77 77 5 7 1 3 6 1 4444444444444444 77 4 3 4 000 333333333333333333333333333333333333333333333333333333 33 1 66 1 33 4 111111 1 666666666666666666666666 999 5 5 5 0 000 55 1 11 3 11 0 3 6 3 0 3 00 7 7 3 7 7 6 0 333 555 11 3 333 5 88 88 1 1 0 0 3 999999999999 0 33 0 8 0 111 6 5 11 111111 33333 66 33333333333333333333333 77 55555 99 222 6 44 1 999999999 5 1 666 5 777 55555 888 6 5 4 111 7 5 5 1
lowQualScore : . ... .. . .. . . .. . .. .. .. . .. ... ... ....... .. .. ...... ... . .... . .. . . ............................................... . . ... . . .. . .. ...... . . . ....... . . . ..... . ............................. . . . . .... ... . . . .... . ... . . . ..... . . ...... .. . .. . . . .. .. . . . . . .... . . ......... .. . .. . . ......... ... .. . .. . .. . .. .. . . . . . . ................ .. . . . ... ...................................................... .. . .. . .. . ...... . ........................ ... . . . . ... .. . .. . .. . . . . . . .. . . . . . . . ... ... .. . ... . .. .. . . . . . ............ . .. . . . ... . . .. ...... ..... .. ....................... .. ..... .. ... . .. . ......... . . ... . ... ..... ... . . . ... . . . .
lowQualScore : 0 000 00 0 55 0 0 00 0 00 00 00 0 55 000 000 5555555 00 55 000000 000 0 5555 5 33 3 3 00000000000000000000000000000000000000000000000 3 7 333 3 7 33 3 88 888888 2 2 0 5555555 2 0 6 00000 0 22222222222222222222222222222 4 7 7 7 5555 777 7 7 5 2222 0 000 8 0 0 66666 6 0 888888 00 5 88 2 0 2 00 00 2 2 7 7 3 7777 7 8 000000000 00 8 00 0 0 666666666 000 22 0 66 7 77 7 99 99 7 5 4 0 0 7 4444444444444444 44 6 9 4 777 777777777777777777777777777777777777777777777777777777 88 1 99 1 77 4 888888 7 444444444444444444444444 555 0 7 7 4 000 00 4 00 8 66 8 2 7 3 7 3 77 3 3 3 3 3 7 7 000 000 00 3 333 0 00 00 0 0 0 0 2 555555555555 8 88 6 0 0 333 6 0 99 000000 77777 11 00000000000000000000000 99 66666 00 444 0 66 7 111111111 0 0 222 0 111 66666 222 0 7 3 444 6 7 7 4
consensus : TAANGAAGAACANNNAATNNTGATACTNCTTCCGGTTTATGANGTATCAANCTTTCCGATNGACGAATTTTNNAAACCTTNAAGCACAGTTTATGTATACTACTTATGCTTAACAAGCTTGGATGAAAGACAGTTGAAAAAAATCTGTATTNTAGTAATACTACTTCTCGGTTGACG--ACGGTAG-TGA-CG-G--CAATAAAAC-T-TGAGA-G-GT---TTTTTCATGT--AAAT--TGATTGCGAT---CTA-TCATCCC--TGA-AGGTT--TGAAGACTCTGC------CTTTAACCATAAATG-AGAAA-----CCGCACAACTTC--C--GGTTCT-TTT---AA------GC--A-CT-TCCG-----GTATCTT-CAAAG-TTCAA-AA-TAACGACTGAA---ATC-T-CCACAA----TGAG-CGT---GCAG-G-AATCATTTTT-N--AAATTTTCAATGAAAA-ACG--CTTGAATNNTCGT--GCAACT-TTCCGGTTTTGGTGAAAAACAAACTTTCCGGA-TGGACATTT-T--AAGGACTCAAAACAGTCTATACGTA---CTA--TTTCTA--AACACTT-AAAACGAAAAAAAGT--A----AAAAAAACTAC-ATTT-TT-ATA-CTACTTCCGGTGGACGAC-GG--AAGTGAC--GGCA-ANAAAATTGAAATAGATATTTC-T--T-----TCT-G-AATTGTTG-CCAATCTATCATC-CCTGAAAGTTT--GAAGAC-C--TAC-ATCTT--A---------GCATTCAG----TGTT--A---CG-GG--AAAT--CGTT--CGAA-CAAA-ATCTGAC-T-TTAA--------A---------T-----CGGCCGTATCCTC-GCGAC-CGG-AAGTGA---TTTTTGCAAAAATATTTGACGTTA--CTCTAGAGAATATTCGATGTTAATAATATGTGTAAAAATCATT-GCAAACGCTT-CACTTA-TTAAGCGAGATAT-TTGAGATTAAAAAATTGCCCGGTTTTCCATGACGTTTTTC--TCTCAAAAAA-CGG---AAATTGCCGTCTTAAACTTCGCGGATAAGTCAANCNTTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCGAGTA-----AATTTCAT--TTTCAA-AAGCATATTAAACTTGAAAATT-TC--GTTT-CT-TATTTTGGA--TCACTTCCGG--T-G-CGA-CCGGA-AGT-GTC-GGAC--GACAGCGACTAACCTTT--TA--GCAAAGCGAAAAGCACA---TCTCGA-GATNT-ACTCA-TCCCTGAAAGTTT--CAAGACTTA-AT--CTTTAAGC-GTTTAGCAAANACTCGCGCGGACAAAA-TGACA-TTTAAA-AAACGGAAAATCGGCCC
Reference ( family-3404 ) : TAANGAAGAACANNNAATNNTGATACTNCTTCCGGTTTATGANGTATCAANCTTTCCGATNGACGAATTTTNNAAACCTTNAAGCACAGTTTATGTATACTACTTATGCTTAACAAGCTTGGATGAAAGACAGTTGAAAAAAATCTGTATTNTAGTAATACTACTTCTCGGTTGACG--ACGGTAG-TGA-CG-G--CAATAAAAC-T-TGAGA-G-GT---TTTTTCATGT--AAAT--TGATTGCGAT---CTA-TCATCCC--TGA-AGGTT--TGAAGACTCTGC------CTTTAACCATAAATG-AGAAA-----CCGCACAACTTC--C--GGTTCT-TTT---AA------GC--A-CT-TCCG-----GTATCTT-CAAAG-TTCAA-AA-TAACGACTGAA---ATC-T-CCACAA----TGAG-CGT---GCAG-G-AATCATTTTT-N--AAATTTTCAATGAAAA-ACG--CTTGAATNNTCGT--GCAACT-TTCCGGTTTTGGTGAAAAACAAACTTTCCGGA-TGGACATTT-T--AAGGACTCAAAACAGTCTATACGTA---CTA--TTTCTA--AACACTT-AAAACGAAAAAAAGT--A----AAAAAAACTAC-ATTT-TT-ATA-CTACTTCCGGTGGACGAC-GG--AAGTGAC--GGCA-ANAAAATTGAAATAGATATTTC-T--T-----TCT-G-AATTGTTG-CCAATCTATCATC-CCTGAAAGTTT--GAAGAC-C--TAC-ATCTT--A---------GCATTCAG----TGTT--A---CG-GG--AAAT--CGTT--CGAA-CAAA-ATCTGAC-T-TTAA--------A---------T-----CGGCCGTATCCTC-GCGAC-CGG-AAGTGA---TTTTTGCAAAAATATTTGACGTTA--CTCTAGAGAATATTCGATGTTAATAATATGTGTAAAAATCATT-GCAAACGCTT-CACTTA-TTAAGCGAGATAT-TTGAGATTAAAAAATTGCCCGGTTTTCCATGACGTTTTTC--TCTCAAAAAA-CGG---AAATTGCCGTCTTAAACTTCGCGGATAAGTCAANCNTTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCGAGTA-----AATTTCAT--TTTCAA-AAGCATATTAAACTTGAAAATT-TC--GTTT-CT-TATTTTGGA--TCACTTCCGG--T-N-CGA-CCGGA-AGT-GTC-GGAC--GACAGCGACTAACCTTT--TA--GCAAAGCGAAAAGCACA---TCTCGA-GATNT-ACTCA-TCCCTGAAAGTTT--CAAGACTTA-AT--CTTTAAGC-GTTTAGCAAAAACTCGCGCGGACAAAA-TGACA-TTTAAA-AAACGGAAAATCGGCCC
gi|1 : TAATGAAGAACACCAAATTTTGATACTACTTCCGGTTTA-GAAGTATCAATCTTTCCGATTAATGAATTTTGGAAACCTTCAAGCACA---TATGTATATTACTTATGC--AACAAGCTT--ATGAAA------TGAAAAAA---TGTATTGTAGTAATACTACTTCTCGGTGGACGGTACGGTAGTTGA-CGTG--CAATCAAACTT-TGAAATGTGT---TTCTTCATGTCAAAAT--TGATTGCAAT---CTAGTCATCCCCTTGA-AGGTT--TGAAGACTCTAT------CTTT-ACCATAAATG-AGAAAACATTCCGCACACTTTCGGC--GGTTCT-TTTAAAAA------GC--AGCTGTCCG-----GAATCTT-CAAAGCCTCAC-AATTCACGACTAAA---ATCAT-CCACAA----TGAGCCGA---GCAGCGCAATGATTTTTGC--CAATTTCCAATGAAAACATG--CCTGAATTTTCGTTAGCAACTGCTCCGGATTTG--GGAAAACTAACTTTCCGGA-TGGACATCT-T--AAGGACTCAAAAC-GTGTACGTGTAAGCCTAATTTTCTA--AACACTT-AAAACGAAAAAAAGTAAA----AAAAAAATTGCAATCT-TT-ATA-CTACTTCCGGTGGACGAC-GGACAGGTGACCTGGAA-AAGAAATTGAAATAGGTATTTC-T--T-----TCTGG-AATTATTGCCCAATCTATCATCACCTGAAAGTTTTGAAAGAC-C--TAC-ATCTT--A----------CATTCAGT---TGTT--A---TGAGG--AAAT--CATT--CAAAGCAAA-ATCTCAC-TCTTAA--------A---------T-----CGGCCATATCCTCAACGACGCGGCAAGTAAAACTTTCTGT--AAATATTTGACGTTAGGC-CTAGAGAATATCAAATGTTAATAATATGTGTAAAAAT-ATTGGAAAACACTTGCACTTATTTAGGCGCGA-ATATTGAGATTAAAAAATTGCCCAGTTTGCCATGACGTTTTTC--TC----AAAA-CGGCGAAGATTGCCGT-TTAAACTTCGCGGATAAGTCAAACTTTTCTAAAAA-CTGCAAAGACCACCTGATTTATCACAATATGCACAGTTTTAT--TTTCAACAAGCATATT--ACTTGAAAATT-TTCAATTT-TTATATTTTGGA--TCACTTCCGGTTT-G-CGACCCGGATAGTCGTCAGGACCGAACAGCGGTTAACCTTTC-TG--GC--AGCAATAAGCACA---TCTCGA-GATAT-ACTCATTCTCTGAACGTTT--CAAGACTTA-ATTCCTTTAAGC-GTTTAGCAAAAAATCGCGTGGACAAAATTGACA-TTTAAA-AAACGGAAAATCGGCCC
gi|10 : -CTATTTTCGGTGGACGAC-GG--AAGTGAC--AGCA-ATACAATTAAAATGCATATTTT-T--T-----ATT-T-TATTGTTG-CCACT-TACCATC-CCTGAAAGTTT--CAAAAA-----ACAATCTT--GAATAAAACTGCATTTGG----TAAT--AATGCG-TG--CAAT--AATT--AAAT-TAAAGATCT--C-T-TTAA--------A---------T-----ccgta
gi|11 : T--TGAAGACTCTAC------TTTTAACCATAAACG-AGGAA-----ATGCATAACTTC--C--GGTT-T-TTT---AA------GC--A-CT-TCCG-----GTATCTT-CAGAG-TTCAA-AA-T-ACATCTGAA---ATC-T-CAACAA----TG
gi|12 : AA-GAAA-ATCTCAC-T-TTAA--------A---------T-----CGGCCATATC-TC-ACGAC-CGG-AAGTAA---ATTTTGTAAAAATATTTGACGTTA--GCCTAGAGAATA-TCAATGTTAATAATATGTG
gi|13 : aGACTTAAAACAGTCTAT---TA---CTA--ATCCCATCAACATTT-GAATTTAAAAAAA-T--AATTTAAAAAAATTG--AGTA-TG-ATA-ATACTTCCGGT-------------ATTGAC--GGCA-A
gi|14 : ctA---TTTCGA-GATGT-A-TCA-TCTCTGAAAGTTT--CAAGACGCA-AT--CTTCAAGC-GTTTAG-AATAAATCGCGTGGACAAAA-TGACA-TTTAAA-AAt
gi|15 : tgcacaatataTCAA-AAGCATA---AACTTGAAA-TT-TC--ATTT-C---ATTT-GGA--TCACTTCCGG--T-ATCGA-CCGGA-AGT-GTC-GGAC--GACAGCGACTAACCT
gi|16 : -CAAAG-TTCAA-AA-TA-CATCTGAA---ATA-T-CCACAA----TGGG-CGT---GTAG-G-AATCATTTCT-A--CAAGTATCAATGCAAA-A
gi|17 : -TATTTCG-A--TTACTTCCGG--T-TTCGA-CCGGA-AGT-GTC-GGAC--GACAGCGACTAACCTT
gi|18 : AAAGCA-A---TCTCGA-GATAT-A-TCA-TCTCTGAAAGTTT--CAAGACTTA-AT--CT
gi|2 : tgcacGTTGGCG--ACGGTAG-TGAGCG-GATCA-TAAAAT-TGTGAGA-AAGTAAGTTTTTCATGT--AGAAGATGATAGCGATTTTCTA-T-ATCGC--TGAGAGGTTGTTGAACACTGTGCTTAGAACTATAATTATAGATGTAGAAA-----TGGCA-AACGTG--CAGGGTTCTGTTC---AAAAGTTAGCTGA-TT-TCGGCAGGAGAATCTTTCAGAG-CTCAATAA-GA--GACTGAA---ATC-T-C-GCAACTACTGAG-CGTTGTGC-G-G-AATCATTTTT-TGCAAATTTTCAAT-AAAA-ATG--CT-GAATTGTCGT--GCAACT-T-CCGGTTGTGGTGAAAAAGAAACTATCCGGGGTGGACAATTAT--AAGGACTCAAAACAGTCTATATGCA---CTA--TTTCGA--AACACTTAAAAACGAAAAAAAGT--A----AAAAA---TAC-ATTTATT-ATGCCTACTTCCGGTGGACGAC-GG--AAGTGAC--GGCA-AAAAAATTGAAATAAAATTTTC-T--A-----TTT-G-AATTATTG--CAATCTATCATC-CCTGAAAGTTT--GAAGAC-C--TA--ATCTT-------------CATTCA-----T-TT--A---TT-AG--AAAT--TGAT--CGAA-CAAA-ATCTAAT-T-TGAA--------A---------T-----CGGACATAT-CTC-ACGAC-CGG-AAGTTA---TTTTGGCAAAAATATTTGATGTTG--CTCTAGAGAATATT-GATGTTAAAAATATGTGTAAAAATCATT-GCAAACACTT-CAATTA-TT-AGCGAGATAT-TTGAGATTAAAAAA-TG-CCAGTTTTC--TGACGTTTTT---TCTCAAAAAACCGG---AAGTTG
gi|3 : cgaACAACTTC--C--AGTTCT-TGT------------C--A--------------TGCCTT-TGAAG-TTCAT-AA--AACGAATGACCGTATA-TACCATAT----TGAG-CAC---GCAG-G-TATCATCTCT-C--AATGTTTTAAAGAAAA-ACAAAC---AATGATGAT--ACT-CT-TTCCGGTTTATATGTAT--CAAA-TTTC--GA-TGGACATTT-TCTAA---CTTAAAACAGTTTAT---TA---CTA--TT-CTT--AACATTT-GGA-TAAAAGACAGTTGA----AAAAAATCTAT-ATTT-T--AGA-TTACTTCCGGTTAATGAT-TG--TAGTGAC--GGCA-A-----------TAGAT------T--T-----T-----AATTGCTG-C-AATCCATCATC-CCGGAACGTTT--GAAGACTC--TGC-CTTTA--A---------GCATT
gi|3 : attaaacttgcatagataacacacaaagagattaaatttatcaattccaaTAAAGAAAAACAAACAATGATGATACTCTTTCCGGTTTAT-ATGTATCAAATTT--CGATGGAC--ATTTTCTAA--CTTAAA--ACAGTTTAT---TACTATT----CTTAACA--TTTGGATAAAAGACAGTTGAAAAAAATCTATATTTTAG----ATTACTTC-CGGTTAATG--ATTGTAG-TGA-CG-G--CAATA-------------G-AT---TTT----------AAT--TG-CTGCAAT---CCA-TCATCCC--GGA-ACGTT--TGAAGACTCTGC------CTTTAAGCATTAATG-AGAAA-----CCGCCCATCGTC--C--ACTTCT-TTT---CAT-----GC--A-CT-TCCG-----GTATCTT-CAAAA-TTCAA-AA-T-ATGACTAAA---AAC-T-CCACAA----TGAA-CGT---GCAG-G-AATCATTTTTCG--AAATTTTTAATGGAAA-ACG--CTT-AATGTTGGT--ACAACT-TTCTG--TTTG--GAAAAACaatgagaaaccgcccatcgtccacttcttttcatgcacttccggtatcttcaaaattcaaaatatgactaaaaactccacaatgaacgtgcaggaatcatttttcgaaatttttaatggaaaacgcttaatgttggtacaactttctgtttggaaaaacggctttttagtgaaaatattctgaattcagatagttatttcatatg
gi|4 : attaaacttgcatagataacacacaaagagattaaatttatcaattccaaacaacttccagttcttgtcatgcctttgaagttcataaaacgaatgaccgtatataccatattgagcacgcaggtatcatctctcaatgtttAATTCAGATAGTTATTTC-A--T------AT-GTAGTTGTTG-TCA-TATATCATC-AATGAACGTTTT-GAAGAC-T--CAT--TCCT-------------CATTCA-----TAT---A---TG-TA--AACT--CGTT--TGAA-TAAA-ATATAAT-T-TTAAGAGTAGAAA---------T-----CGGTCACATCTTT-G--GC-CGG-AAGTAA---TTGTTGCAAAAATATTTAAAATTA--CTTTACAGA-TGTGTGATGTCAATAATGTGTGTGAAAATCATT-ACAAACGCTT-CACTTA--TAAGCGAAATAT-GTGAGATT-GAAAATTGCCAGATTTTTCA--ATGTTTTTCTATTTTAAAAAA-CGG---AAATAGCCGTCTTAA--TTTGCG--TAAGTCAATCATTTTA-GAAATCTGTAAAAGAAACCTAA-TTAG--GG-------------CATGATTTCAA-AAGCA---TAAACTTG-AAATT-TCA-GT----T-TATTTT-GA--TCACTTCTGG--TGA-CTA-CTGGA-ATA-GTC-AGAC--GGCAGAGACAAAC--TT--TAATGCAAAGCAAAAAGTA---------GA-GATTT-----A-TCCATGAAGGTTT--CAAGATTT--AT--TATCAACC-GTTTAGCAAAAA-TCTCCCAAAGAAAA-TGACA-CGAAAATAAACGGAAAATCGGggctttttagtgaaaatattctgaattcagatagttatttcatatg
gi|5 : tagtgaaaatattctgAATTTGAA--TTCTC--GTTT-CT-T-TTAT-----TCACT-CCGG--T-G-CGA-C-GGA-AGT-G------C--GCCAGGAACAAAACTTTAGTA--CCTAATTCACA--CACAATTTGTCCACGATAT-AATCA-TCCCTGAAAGTTT----AGAC-CA-AT--CTTAAACC-G-TTAGGAGAAACCTGT-CGGACAACA-T-ACATTTTAAACAAACGGAAAATCGGACC
gi|6 : gaaacttacatgttctaggattattcagacatGACTCAAAATAATCTA-ACACA---CTA--TTTTTA--AACACTC-AAAATGAAAAAAA----------AAAACACCAA-ATTT-TTTATT-CTACTTCCGGTGGACGAC-GG--AAGAGAC--GGCA-ATAAATTTGAAATAAGTATTTCAT--T-----TCT---ATTTGTTG-CCA-TCTATCATA-TCTGAAAATTT--GAAGAC-CACTAT-CTTTT--T---------GCATTTA-----TGT-----------A--AAAT--CGCT--CTAA-TGAA-ATCTAAT-T-TGAA--------AAAAG-----TAAAAATGTCCATATC-TC-ACAAC-TGG-AAGTGA---GTTTTGCAAAAATATTTAATGTTT--CTCTAGAT-ATGTTAGATGTCCATAATATGTGTAAAAATgctactgtatttttcacgacggaagtgtttttgaaaatgaaaaaaaatgatctagaacttatcccgaataagtttcctgaaagttttcatagaaagatccattagggcagaggttgaggtgtccattttccgagaaatcgcgtgcacaatcgtagagaaaaagagggacataactag
gi|7 : TTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCAAGTA-----AATTTCAT--TT--AA-AA--ATATTAAATTTGAAATTT-CT--GTTTACT-T---TTG----TCCCTTTCGG--T-T---------------------AC--GACAA-----AACCTTT--TA--ACAAAG-GAAAAG---------TCAA-GATCT--CTCA-TCCCTGAAACTTT--TACGA-TTATAT--CTTTAAGC-GTTTAGCAAAT-CTCGCACGGACAAAA-TGGCA-TTCAAA-AATCTGAAAATCGGC
gi|7 : atATCTCTCATC-CCTGAAACTTT--TACGAT----TAT-ATCTTTAA---------GCGTTTAGCAAATCTCGCA---CG-GACAAAATGGCATT--CAAA----A-ATCTGA------AA--------A---------T-----CGGCAGTA-ACTC-GCGAC-CGG-AAGCGA---TTTT--CAAAAagtaactcgcgaccggaagcgattttcaaaacaagaaatgaggttttcgagtctatatt
gi|7 : attttttaaaactgtaaaagaaacctaatttagccaagtaaatttcatttaaaaatattaaatttgaaatttctgtttacttttgtccctttcggttacgacaaaaccttttaacaaaggaaaagtcaagATAT-AGACTCGAAAACC-TC--ATTT-CT-TGTTTTGAAAATCGCTTCCGG--TCG-CGA-caagaaatgaggttttcgagtctatatt
gi|8 : attttttaaaactgtaaaagaaacctaatttagccaagtaaatttcatttaaaaatattaaatttgaaatttctgtttacttttgtccctttcggttacgacaaaaccttttaacaaaggaaaagtcaagatctctcatccctgaaacttttacgattatatctttaagcgtttagcaaatctcgcacggacaaaatggcattcaaaaatctgaaaatcggcagtaacTTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCAAGTA-----AATTTCAT--TT--AA-AA--ATATTAAATTTGAAATTT-CT--GTTTACT-T---TTG----TCCCTTTCGG--T-T---------------------AC--GACAA-----AACCTTT--TA--ACAAAG-GAAAAG---------TCAA-GATCT--CTCA-TCCCTGAAACTTT--TACGA-TTATAT---TTTAAGC-GTTTAGCAAAT-CTCGCACGGACAAAA-TGGCA-TTCAAA-AATCTGAAAATCGGCt
gi|8 : atATCTCTCATC-CCTGAAACTTT--TACGAT----TAT-ATTTT--AA--------GCGTTTAGCAAATCTCGCA---CG-GACAAAATGGCATT--CAAA----A-ATCTGA------AA--------A---------T-----CGGCAGTA-ACTC-GCGAC-CGG-AAGCGA---TTT---CAAAAagtaactcgcgaccggaagcgatttcaaaacaagaaatgaggttttcgagtctatatt
gi|8 : attttttaaaactgtaaaagaaacctaatttagccaagtaaatttcatttaaaaatattaaatttgaaatttctgtttacttttgtccctttcggttacgacaaaaccttttaacaaaggaaaagtcaagATAT-AGACTCGAAAACC-TC--ATTT-CT-TGTTTTGAAA-TCGCTTCCGG--TCG-CGA-caagaaatgaggttttcgagtctatatt
gi|9 : attttttaaaactgtaaaagaaacctaatttagccaagtaaatttcatttaaaaatattaaatttgaaatttctgtttacttttgtccctttcggttacgacaaaaccttttaacaaaggaaaagtcaagatctctcatccctgaaacttttacgattatattttaagcgtttagcaaatctcgcacggacaaaatggcattcaaaaatctgaaaatcggcagtaacCCAGTG-ACGACCGG--AAGTGA---AGTACACAAAA-----ATAG-TATGTC-TAATGCACATCT-G-AAT----G-TCAAT-----AGT-CCTGAAAGTTT--GACGAA-----ACAATGTTA-A---------GC----------TGTT------TG-GG--AGAT--ACCTGACGGA-CAAA-A--TGACAT-TTAA--------AAACGTAAACT-----TGGCCGTA-ACTC-GCt
gi|9 : AATGCACA---TCT-GA--ATGTCAATAG-TCC-TGAAAGTTTGACGAAAC--A-AT--GTT-AAGCTGTTTGGGAGATACCTG-ACGGACAAAA-TGACA-TTT-AA-AAACGTAAACTTGGCCttattttt
Alignments
lowQualScore : 33 11 11 11 11 222 222 3333333 11 11 222222 222 2222 1 11 1 1 77777777777777777777777777777777777777777777777 222 1 11 1 11 222222 1 2222222 11111 55555555555555555555555555555 2222 111 1111 111 22222 222222 11 1 22 1 2222 222222222 11 11 444444444 11 11 3333333333333333 111 999999999999999999999999999999999999999999999999999999 11 11 111111 333333333333333333333333 111 111 11 1 1 1 22 1 111 222 11 1 222 1 11 11 1 1 222222222222 11 1 1 111 11 111111 22222 44444444444444444444444 11111 11 111 11 222222222 222 11111 111 1
lowQualScore : 1 333 22 1 00 1 1 88 1 88 22 88 1 77 111 111 2222222 88 77 999999 111 1 4444 5 88 3 3 99999999999999999999999999999999999999999999999 7 0 333 3 6 88 3 33 888888 3 0 0 5555555 3 1 0 22222 8 44444444444444444444444444444 1 6 6 6 8888 111 6 6 2 4444 8 444 0 8 8 88888 0 8 888888 22 2 33 3 0 3 66 22 1 3 6 6 3 2222 6 0 999999999 11 3 11 8 6 000000000 888 66 8 33 6 33 5 77 77 5 7 1 3 6 1 4444444444444444 77 4 3 4 000 333333333333333333333333333333333333333333333333333333 33 1 66 1 33 4 111111 1 666666666666666666666666 999 5 5 5 0 000 55 1 11 3 11 0 3 6 3 0 3 00 7 7 3 7 7 6 0 333 555 11 3 333 5 88 88 1 1 0 0 3 999999999999 0 33 0 8 0 111 6 5 11 111111 33333 66 22222222222222222222222 77 55555 99 222 6 44 1 999999999 5 1 666 5 777 55555 888 6 5 4 000 7 5 5 1
lowQualScore : . ... .. . .. . . .. . .. .. .. . .. ... ... ....... .. .. ...... ... . .... . .. . . ............................................... . . ... . . .. . .. ...... . . . ....... . . . ..... . ............................. . . . . .... ... . . . .... . ... . . . ..... . . ...... .. . .. . . . .. .. . . . . . .... . . ......... .. . .. . . ......... ... .. . .. . .. . .. .. . . . . . . ................ .. . . . ... ...................................................... .. . .. . .. . ...... . ........................ ... . . . . ... .. . .. . .. . . . . . . .. . . . . . . . ... ... .. . ... . .. .. . . . . . ............ . .. . . . ... . . .. ...... ..... .. ....................... .. ..... .. ... . .. . ......... . . ... . ... ..... ... . . . ... . . . .
lowQualScore : 0 000 00 0 55 0 0 00 0 00 00 00 0 55 000 000 5555555 00 55 000000 000 0 5555 5 33 3 3 00000000000000000000000000000000000000000000000 3 7 333 3 7 33 3 88 888888 2 2 0 5555555 2 0 6 00000 0 22222222222222222222222222222 4 7 7 7 5555 777 7 7 5 2222 0 000 8 0 0 66666 6 0 888888 00 5 88 2 0 2 00 00 2 2 7 7 3 7777 7 8 000000000 00 8 00 0 0 666666666 000 22 0 66 7 77 7 99 99 7 5 4 0 0 7 4444444444444444 44 6 9 4 777 777777777777777777777777777777777777777777777777777777 88 1 99 1 77 4 888888 7 444444444444444444444444 555 0 7 7 4 000 00 4 00 8 66 8 2 7 3 7 3 77 3 3 3 3 3 7 7 000 000 00 3 333 0 00 00 0 0 0 0 2 555555555555 8 88 6 0 0 333 6 0 99 000000 77777 11 44444444444444444444444 99 66666 00 444 0 66 7 111111111 0 0 222 0 111 66666 222 0 7 3 333 6 7 7 4
consensus : TAANGAAGAACANNNAATNNTGATACTNCTTCCGGTTTATGANGTATCAANCTTTCCGATNGACGAATTTTNNAAACCTTNAAGCACAGTTTATGTATACTACTTATGCTTAACAAGCTTGGATGAAAGACAGTTGAAAAAAATCTGTATTNTAGTAATACTACTTCTCGGTTGACG--ACGGTAG-TGA-CG-G--CAATAAAAC-T-TGAGA-G-GT---TTTTTCATGT--AAAT--TGATTGCGAT---CTA-TCATCCC--TGA-AGGTT--TGAAGACTCTGC------CTTTAACCATAAATG-AGAAA-----CCGCACAACTTC--C--GGTTCT-TTT---AA------GC--A-CT-TCCG-----GTATCTT-CAAAG-TTCAA-AA-TAACGACTGAA---ATC-T-CCACAA----TGAG-CGT---GCAG-G-AATCATTTTT-N--AAATTTTCAATGAAAA-ACG--CTTGAATNNTCGT--GCAACT-TTCCGGTTTTGGTGAAAAACAAACTTTCCGGA-TGGACATTT-T--AAGGACTCAAAACAGTCTATACGTA---CTA--TTTCTA--AACACTT-AAAACGAAAAAAAGT--A----AAAAAAACTAC-ATTT-TT-ATA-CTACTTCCGGTGGACGAC-GG--AAGTGAC--GGCA-ANAAAATTGAAATAGATATTTC-T--T-----TCT-G-AATTGTTG-CCAATCTATCATC-CCTGAAAGTTT--GAAGAC-C--TAC-ATCTT--A---------GCATTCAG----TGTT--A---CG-GG--AAAT--CGTT--CGAA-CAAA-ATCTGAC-T-TTAA--------A---------T-----CGGCCGTATCCTC-GCGAC-CGG-AAGTGA---TTTTTGCAAAAATATTTGACGTTA--CTCTAGAGAATATTCGATGTTAATAATATGTGTAAAAATCATT-GCAAACGCTT-CACTTA-TTAAGCGAGATAT-TTGAGATTAAAAAATTGCCCGGTTTTCCATGACGTTTTTC--TCTCAAAAAA-CGG---AAATTGCCGTCTTAAACTTCGCGGATAAGTCAANCNTTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCGAGTA-----AATTTCAT--TTTCAA-AAGCATATTAAACTTGAAAATT-TC--GTTT-CT-TATTTTGGA--TCACTTCCGG--T-G-CGA-CCGGA-AGT-GTC-GGAC--GACAGCGACTAACCTTT--TA--GCAAAGCGAAAAGCACA---TCTCGA-GATNT-ACTCA-TCCCTGAAAGTTT--CAAGACTTA-AT--CTTTAAGC-GTTTAGCAAANACTCGCGCGGACAAAA-TGACA-TTTAAA-AAACGGAAAATCGGCCC
Reference ( family-3404 ) : TAANGAAGAACANNNAATNNTGATACTNCTTCCGGTTTATGANGTATCAANCTTTCCGATNGACGAATTTTNNAAACCTTNAAGCACAGTTTATGTATACTACTTATGCTTAACAAGCTTGGATGAAAGACAGTTGAAAAAAATCTGTATTNTAGTAATACTACTTCTCGGTTGACG--ACGGTAG-TGA-CG-G--CAATAAAAC-T-TGAGA-G-GT---TTTTTCATGT--AAAT--TGATTGCGAT---CTA-TCATCCC--TGA-AGGTT--TGAAGACTCTGC------CTTTAACCATAAATG-AGAAA-----CCGCACAACTTC--C--GGTTCT-TTT---AA------GC--A-CT-TCCG-----GTATCTT-CAAAG-TTCAA-AA-TAACGACTGAA---ATC-T-CCACAA----TGAG-CGT---GCAG-G-AATCATTTTT-N--AAATTTTCAATGAAAA-ACG--CTTGAATNNTCGT--GCAACT-TTCCGGTTTTGGTGAAAAACAAACTTTCCGGA-TGGACATTT-T--AAGGACTCAAAACAGTCTATACGTA---CTA--TTTCTA--AACACTT-AAAACGAAAAAAAGT--A----AAAAAAACTAC-ATTT-TT-ATA-CTACTTCCGGTGGACGAC-GG--AAGTGAC--GGCA-ANAAAATTGAAATAGATATTTC-T--T-----TCT-G-AATTGTTG-CCAATCTATCATC-CCTGAAAGTTT--GAAGAC-C--TAC-ATCTT--A---------GCATTCAG----TGTT--A---CG-GG--AAAT--CGTT--CGAA-CAAA-ATCTGAC-T-TTAA--------A---------T-----CGGCCGTATCCTC-GCGAC-CGG-AAGTGA---TTTTTGCAAAAATATTTGACGTTA--CTCTAGAGAATATTCGATGTTAATAATATGTGTAAAAATCATT-GCAAACGCTT-CACTTA-TTAAGCGAGATAT-TTGAGATTAAAAAATTGCCCGGTTTTCCATGACGTTTTTC--TCTCAAAAAA-CGG---AAATTGCCGTCTTAAACTTCGCGGATAAGTCAANCNTTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCGAGTA-----AATTTCAT--TTTCAA-AAGCATATTAAACTTGAAAATT-TC--GTTT-CT-TATTTTGGA--TCACTTCCGG--T-G-CGA-CCGGA-AGT-GTC-GGAC--GACAGCGACTAACCTTT--TA--GCAAAGCGAAAAGCACA---TCTCGA-GATNT-ACTCA-TCCCTGAAAGTTT--CAAGACTTA-AT--CTTTAAGC-GTTTAGCAAANACTCGCGCGGACAAAA-TGACA-TTTAAA-AAACGGAAAATCGGCCC
gi|1 : TAATGAAGAACACCAAATTTTGATACTACTTCCGGTTTA-GAAGTATCAATCTTTCCGATTAATGAATTTTGGAAACCTTCAAGCACA---TATGTATATTACTTATGC--AACAAGCTT--ATGAAA------TGAAAAAA---TGTATTGTAGTAATACTACTTCTCGGTGGACGGTACGGTAGTTGA-CGTG--CAATCAAACTT-TGAAATGTGT---TTCTTCATGTCAAAAT--TGATTGCAAT---CTAGTCATCCCCTTGA-AGGTT--TGAAGACTCTAT------CTTT-ACCATAAATG-AGAAAACATTCCGCACACTTTCGGC--GGTTCT-TTTAAAAA------GC--AGCTGTCCG-----GAATCTT-CAAAGCCTCAC-AATTCACGACTAAA---ATCAT-CCACAA----TGAGCCGA---GCAGCGCAATGATTTTTGC--CAATTTCCAATGAAAACATG--CCTGAATTTTCGTTAGCAACTGCTCCGGATTTG--GGAAAACTAACTTTCCGGA-TGGACATCT-T--AAGGACTCAAAAC-GTGTACGTGTAAGCCTAATTTTCTA--AACACTT-AAAACGAAAAAAAGTAAA----AAAAAAATTGCAATCT-TT-ATA-CTACTTCCGGTGGACGAC-GGACAGGTGACCTGGAA-AAGAAATTGAAATAGGTATTTC-T--T-----TCTGG-AATTATTGCCCAATCTATCATCACCTGAAAGTTTTGAAAGAC-C--TAC-ATCTT--A----------CATTCAGT---TGTT--A---TGAGG--AAAT--CATT--CAAAGCAAA-ATCTCAC-TCTTAA--------A---------T-----CGGCCATATCCTCAACGACGCGGCAAGTAAAACTTTCTGT--AAATATTTGACGTTAGGC-CTAGAGAATATCAAATGTTAATAATATGTGTAAAAAT-ATTGGAAAACACTTGCACTTATTTAGGCGCGA-ATATTGAGATTAAAAAATTGCCCAGTTTGCCATGACGTTTTTC--TC----AAAA-CGGCGAAGATTGCCGT-TTAAACTTCGCGGATAAGTCAAACTTTTCTAAAAA-CTGCAAAGACCACCTGATTTATCACAATATGCACAGTTTTAT--TTTCAACAAGCATATT--ACTTGAAAATT-TTCAATTT-TTATATTTTGGA--TCACTTCCGGTTT-G-CGACCCGGATAGTCGTCAGGACCGAACAGCGGTTAACCTTTC-TG--GC--AGCAATAAGCACA---TCTCGA-GATAT-ACTCATTCTCTGAACGTTT--CAAGACTTA-ATTCCTTTAAGC-GTTTAGCAAAAAATCGCGTGGACAAAATTGACA-TTTAAA-AAACGGAAAATCGGCCC
gi|10 : -CTATTTTCGGTGGACGAC-GG--AAGTGAC--AGCA-ATACAATTAAAATGCATATTTT-T--T-----ATT-T-TATTGTTG-CCACT-TACCATC-CCTGAAAGTTT--CAAAAA-----ACAATCTT--GAATAAAACTGCATTTGG----TAAT--AATGCG-TG--CAAT--AATT--AAAT-TAAAGATCT--C-T-TTAA--------A---------T-----ccgta
gi|11 : T--TGAAGACTCTAC------TTTTAACCATAAACG-AGGAA-----ATGCATAACTTC--C--GGTT-T-TTT---AA------GC--A-CT-TCCG-----GTATCTT-CAGAG-TTCAA-AA-T-ACATCTGAA---ATC-T-CAACAA----TG
gi|12 : AA-GAAA-ATCTCAC-T-TTAA--------A---------T-----CGGCCATATC-TC-ACGAC-CGG-AAGTAA---ATTTTGTAAAAATATTTGACGTTA--GCCTAGAGAATA-TCAATGTTAATAATATGTG
gi|13 : aGACTTAAAACAGTCTAT---TA---CTA--ATCCCATCAACATTT-GAATTTAAAAAAA-T--AATTTAAAAAAATTG--AGTA-TG-ATA-ATACTTCCGGT-------------ATTGAC--GGCA-A
gi|14 : ctA---TTTCGA-GATGT-A-TCA-TCTCTGAAAGTTT--CAAGACGCA-AT--CTTCAAGC-GTTTAG-AATAAATCGCGTGGACAAAA-TGACA-TTTAAA-AAt
gi|15 : tgcacaatataTCAA-AAGCATA---AACTTGAAA-TT-TC--ATTT-C---ATTT-GGA--TCACTTCCGG--T-ATCGA-CCGGA-AGT-GTC-GGAC--GACAGCGACTAACCT
gi|16 : -CAAAG-TTCAA-AA-TA-CATCTGAA---ATA-T-CCACAA----TGGG-CGT---GTAG-G-AATCATTTCT-A--CAAGTATCAATGCAAA-A
gi|17 : -TATTTCG-A--TTACTTCCGG--T-TTCGA-CCGGA-AGT-GTC-GGAC--GACAGCGACTAACCTT
gi|18 : AAAGCA-A---TCTCGA-GATAT-A-TCA-TCTCTGAAAGTTT--CAAGACTTA-AT--CT
gi|2 : tgcacGTTGGCG--ACGGTAG-TGAGCG-GATCA-TAAAAT-TGTGAGA-AAGTAAGTTTTTCATGT--AGAAGATGATAGCGATTTTCTA-T-ATCGC--TGAGAGGTTGTTGAACACTGTGCTTAGAACTATAATTATAGATGTAGAAA-----TGGCA-AACGTG--CAGGGTTCTGTTC---AAAAGTTAGCTGA-TT-TCGGCAGGAGAATCTTTCAGAG-CTCAATAA-GA--GACTGAA---ATC-T-C-GCAACTACTGAG-CGTTGTGC-G-G-AATCATTTTT-TGCAAATTTTCAAT-AAAA-ATG--CT-GAATTGTCGT--GCAACT-T-CCGGTTGTGGTGAAAAAGAAACTATCCGGGGTGGACAATTAT--AAGGACTCAAAACAGTCTATATGCA---CTA--TTTCGA--AACACTTAAAAACGAAAAAAAGT--A----AAAAA---TAC-ATTTATT-ATGCCTACTTCCGGTGGACGAC-GG--AAGTGAC--GGCA-AAAAAATTGAAATAAAATTTTC-T--A-----TTT-G-AATTATTG--CAATCTATCATC-CCTGAAAGTTT--GAAGAC-C--TA--ATCTT-------------CATTCA-----T-TT--A---TT-AG--AAAT--TGAT--CGAA-CAAA-ATCTAAT-T-TGAA--------A---------T-----CGGACATAT-CTC-ACGAC-CGG-AAGTTA---TTTTGGCAAAAATATTTGATGTTG--CTCTAGAGAATATT-GATGTTAAAAATATGTGTAAAAATCATT-GCAAACACTT-CAATTA-TT-AGCGAGATAT-TTGAGATTAAAAAA-TG-CCAGTTTTC--TGACGTTTTT---TCTCAAAAAACCGG---AAGTTG
gi|3 : cgaACAACTTC--C--AGTTCT-TGT------------C--A--------------TGCCTT-TGAAG-TTCAT-AA--AACGAATGACCGTATA-TACCATAT----TGAG-CAC---GCAG-G-TATCATCTCT-C--AATGTTTTAAAGAAAA-ACAAAC---AATGATGAT--ACT-CT-TTCCGGTTTATATGTAT--CAAA-TTTC--GA-TGGACATTT-TCTAA---CTTAAAACAGTTTAT---TA---CTA--TT-CTT--AACATTT-GGA-TAAAAGACAGTTGA----AAAAAATCTAT-ATTT-T--AGA-TTACTTCCGGTTAATGAT-TG--TAGTGAC--GGCA-A-----------TAGAT------T--T-----T-----AATTGCTG-C-AATCCATCATC-CCGGAACGTTT--GAAGACTC--TGC-CTTTA--A---------GCATT
gi|3 : attaaacttgcatagataacacacaaagagattaaatttatcaattccaaTAAAGAAAAACAAACAATGATGATACTCTTTCCGGTTTAT-ATGTATCAAATTT--CGATGGAC--ATTTTCTAA--CTTAAA--ACAGTTTAT---TACTATT----CTTAACA--TTTGGATAAAAGACAGTTGAAAAAAATCTATATTTTAG----ATTACTTC-CGGTTAATG--ATTGTAG-TGA-CG-G--CAATA-------------G-AT---TTT----------AAT--TG-CTGCAAT---CCA-TCATCCC--GGA-ACGTT--TGAAGACTCTGC------CTTTAAGCATTAATG-AGAAA-----CCGCCCATCGTC--C--ACTTCT-TTT---CAT-----GC--A-CT-TCCG-----GTATCTT-CAAAA-TTCAA-AA-T-ATGACTAAA---AAC-T-CCACAA----TGAA-CGT---GCAG-G-AATCATTTTTCG--AAATTTTTAATGGAAA-ACG--CTT-AATGTTGGT--ACAACT-TTCTG--TTTG--GAAAAACaatgagaaaccgcccatcgtccacttcttttcatgcacttccggtatcttcaaaattcaaaatatgactaaaaactccacaatgaacgtgcaggaatcatttttcgaaatttttaatggaaaacgcttaatgttggtacaactttctgtttggaaaaacggctttttagtgaaaatattctgaattcagatagttatttcatatg
gi|4 : attaaacttgcatagataacacacaaagagattaaatttatcaattccaaacaacttccagttcttgtcatgcctttgaagttcataaaacgaatgaccgtatataccatattgagcacgcaggtatcatctctcaatgtttAATTCAGATAGTTATTTC-A--T------AT-GTAGTTGTTG-TCA-TATATCATC-AATGAACGTTTT-GAAGAC-T--CAT--TCCT-------------CATTCA-----TAT---A---TG-TA--AACT--CGTT--TGAA-TAAA-ATATAAT-T-TTAAGAGTAGAAA---------T-----CGGTCACATCTTT-G--GC-CGG-AAGTAA---TTGTTGCAAAAATATTTAAAATTA--CTTTACAGA-TGTGTGATGTCAATAATGTGTGTGAAAATCATT-ACAAACGCTT-CACTTA--TAAGCGAAATAT-GTGAGATT-GAAAATTGCCAGATTTTTCA--ATGTTTTTCTATTTTAAAAAA-CGG---AAATAGCCGTCTTAA--TTTGCG--TAAGTCAATCATTTTA-GAAATCTGTAAAAGAAACCTAA-TTAG--GG-------------CATGATTTCAA-AAGCA---TAAACTTG-AAATT-TCA-GT----T-TATTTT-GA--TCACTTCTGG--T-GACTA-CTGGA-ATA-GTC-AGAC--GGCAGAGACAAAC--TT--TAATGCAAAGCAAAAAGTA---------GA-GATTT-----A-TCCATGAAGGTTT--CAAGATTT--AT--TATCAACC-GTTTAGCAAAAA-TCTCCCAAAGAAAA-TGACA-CGAAAATAAACGGAAAATCGGggctttttagtgaaaatattctgaattcagatagttatttcatatg
gi|5 : tagtgaaaatattctgAATTTGAA--TTCTC--GTTT-CT-T-TTAT-----TCACT-CCGG--T-G-CGA-C-GGA-AGT-G------C--GCCAGGAACAAAACTTTAGTA--CCTAATTCACA--CACAATTTGTCCACGATAT-AATCA-TCCCTGAAAGTTT----AGAC-CA-AT--CTTAAACC-G-TTAGGAGAAACCTGT-CGGACAACA-T-ACATTTTAAACAAACGGAAAATCGGACC
gi|6 : gaaacttacatgttctaggattattcagacatGACTCAAAATAATCTA-ACACA---CTA--TTTTTA--AACACTC-AAAATGAAAAAAA----------AAAACACCAA-ATTT-TTTATT-CTACTTCCGGTGGACGAC-GG--AAGAGAC--GGCA-ATAAATTTGAAATAAGTATTTCAT--T-----TCT---ATTTGTTG-CCA-TCTATCATA-TCTGAAAATTT--GAAGAC-CACTAT-CTTTT--T---------GCATTTA-----TGT-----------A--AAAT--CGCT--CTAA-TGAA-ATCTAAT-T-TGAA--------AAAAG-----TAAAAATGTCCATATC-TC-ACAAC-TGG-AAGTGA---GTTTTGCAAAAATATTTAATGTTT--CTCTAGAT-ATGTTAGATGTCCATAATATGTGTAAAAATgctactgtatttttcacgacggaagtgtttttgaaaatgaaaaaaaatgatctagaacttatcccgaataagtttcctgaaagttttcatagaaagatccattagggcagaggttgaggtgtccattttccgagaaatcgcgtgcacaatcgtagagaaaaagagggacataactag
gi|7 : TTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCAAGTA-----AATTTCAT--TT--AA-AA--ATATTAAATTTGAAATTT-CT--GTTTACT-T---TTG----TCCCTTTCGG--T------------------T----AC--GACAA-----AACCTTT--TA--ACAAAG-GAAAAG---------TCAA-GATCT--CTCA-TCCCTGAAACTTT--TACGA-TTATAT--CTTTAAGC-GTTTAGCAAAT-CTCGCACGGACAAAA-TGGCA-TTCAAA-AATCTGAAAATCGGC
gi|7 : atATCTCTCATC-CCTGAAACTTT--TACGAT----TAT-ATCTTTAA---------GCGTTTAGCAAATCTCGCA---CG-GACAAAATGGCATT--CAAA----A-ATCTGA------AA--------A---------T-----CGGCAGTA-ACTC-GCGAC-CGG-AAGCGA---TTTT--CAAAAagtaactcgcgaccggaagcgattttcaaaacaagaaatgaggttttcgagtctatatt
gi|7 : attttttaaaactgtaaaagaaacctaatttagccaagtaaatttcatttaaaaatattaaatttgaaatttctgtttacttttgtccctttcggttacgacaaaaccttttaacaaaggaaaagtcaagATAT-AGACTCGAAAACC-TC--ATTT-CT-TGTTTTGAAAATCGCTTCCGG--TCG-CGA-caagaaatgaggttttcgagtctatatt
gi|8 : attttttaaaactgtaaaagaaacctaatttagccaagtaaatttcatttaaaaatattaaatttgaaatttctgtttacttttgtccctttcggttacgacaaaaccttttaacaaaggaaaagtcaagatctctcatccctgaaacttttacgattatatctttaagcgtttagcaaatctcgcacggacaaaatggcattcaaaaatctgaaaatcggcagtaacTTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCAAGTA-----AATTTCAT--TT--AA-AA--ATATTAAATTTGAAATTT-CT--GTTTACT-T---TTG----TCCCTTTCGG--T------------------T----AC--GACAA-----AACCTTT--TA--ACAAAG-GAAAAG---------TCAA-GATCT--CTCA-TCCCTGAAACTTT--TACGA-TTATAT---TTTAAGC-GTTTAGCAAAT-CTCGCACGGACAAAA-TGGCA-TTCAAA-AATCTGAAAATCGGCt
gi|8 : atATCTCTCATC-CCTGAAACTTT--TACGAT----TAT-ATTTT--AA--------GCGTTTAGCAAATCTCGCA---CG-GACAAAATGGCATT--CAAA----A-ATCTGA------AA--------A---------T-----CGGCAGTA-ACTC-GCGAC-CGG-AAGCGA---TTT---CAAAAagtaactcgcgaccggaagcgatttcaaaacaagaaatgaggttttcgagtctatatt
gi|8 : attttttaaaactgtaaaagaaacctaatttagccaagtaaatttcatttaaaaatattaaatttgaaatttctgtttacttttgtccctttcggttacgacaaaaccttttaacaaaggaaaagtcaagATAT-AGACTCGAAAACC-TC--ATTT-CT-TGTTTTGAAA-TCGCTTCCGG--TCG-CGA-caagaaatgaggttttcgagtctatatt
gi|9 : attttttaaaactgtaaaagaaacctaatttagccaagtaaatttcatttaaaaatattaaatttgaaatttctgtttacttttgtccctttcggttacgacaaaaccttttaacaaaggaaaagtcaagatctctcatccctgaaacttttacgattatattttaagcgtttagcaaatctcgcacggacaaaatggcattcaaaaatctgaaaatcggcagtaacCCAGTG-ACGACCGG--AAGTGA---AGTACACAAAA-----ATAG-TATGTC-TAATGCACATCT-G-AAT----G-TCAAT-----AGT-CCTGAAAGTTT--GACGAA-----ACAATGTTA-A---------GC----------TGTT------TG-GG--AGAT--ACCTGACGGA-CAAA-A--TGACAT-TTAA--------AAACGTAAACT-----TGGCCGTA-ACTC-GCt
gi|9 : AATGCACA---TCT-GA--ATGTCAATAG-TCC-TGAAAGTTTGACGAAAC--A-AT--GTT-AAGCTGTTTGGGAGATACCTG-ACGGACAAAA-TGACA-TTT-AA-AAACGTAAACTTGGCCttattttt
blockSeqs : A AAC GA C T T A . G . CT . A . GTT . CTT . GG GACAGT ATC T . . . . G GATCATAAAATTGTGAGAAAGTAAGTTTTTCATGTAGAAGA A TTT . C . G GT TTAGAA A T AT T A CAG G AAAAGTTAGCTGATTTCGGCAGGA T T . T TA CGT . A A CTAC . TGT . . TGCA . CTG TG C . A . T GT GT A A C C G TCT G TATGCA . C TC A T TAATTT AAT C A TT C GG C . . C T T A A A TAATGCACATCTG C C C . TG ACAATCTTGAATAAAACTGCATTTGGTAATAATGCGTG GG A GA A T G GACAT T AAAAGTAAAAA TCT . . . . TT C . C AA C C . . T A T . A T C CA CTA TC C . C . . T A . T T CCAAGTA GA T . G TTA A C A ACTT GAAAA . ATCGACCGGAAGTGTCGG . CGACT AG ATG A CA A CACAATTTG C G CAA . GAC CGCA C C T C AAA G . T T
blockSeqs : . . . GCAATAGATTTTAAT . . . . . . . . A . TG C A C . CATGCACTTCCG A . . . TA . . . C . . . . . CGA . AAC GA G . A . T GT AT T A . . . AT . ACACA . T . . A GTTGA ATC T . G . GG . . . . A T G A T TTATTT C A C . C TATATCTTTAAGCGTTTAGCAAATCTCGCACGGACA GG G . G G . CACT T AAACGTAAACT TC . . . . TG T . T AA T C . . . . T . . . . T . TT . . . . T CCAAGTA . T . G TTA T . . CTTG GAAA . TTCGACCGGAAGTGTCGG . CGACT . C T TC A CACATC . A AA . C CTTA C C . G AAC C . . C
blockSeqs : . . A . CC C A C . AAGCACTTCCG T . . . GA . . . C . . . . . AC . CTT GT G . . . . . . A . TTA . T . . A GTA CAC A . T . TA . . . . T T C A A TATTTG T A A . G TATATTTTAAGCGTTTAGCAAATCTCGCACGGACA . G . G C . AATT G GAGTAGAAAT TC . . . . TT A . T A A . . . GG . . . . TA A . . ACTT GGA . GACTACTGGAATAGTCAG . AGACA . A A G A CAATC . T A . C TTAT T A . C TAC A . . .
blockSeqs : . T C . CA T . . . AA . . . C . . . . . CA . TTA . . . . . . . . . . . GG . . . . C T G T A ATATGT C A C . G CACTATCTTTTTGCATTTATGTA . G . T T . AATT T AT TC . . . . TT T . T A . . . . TA T . . CTTG GA . GCGACGGAAGTG . GAACA . A A G A TA . A A . C TTAT C T . C AA A . . .
blockSeqs : . . . TA . . . . . . G . . . . . . . G A ATTTCT T A C . G CTAATCTTCATTCATTTATTAG . A . A T . AATT G AT AC . . . . T TA A . . TTA GA . T . . T . . C C . T TTT C T . G TC A . . .
blockSeqs : . . . . . . . . . TTT . A C . T TCATTCCTCATTCATATATGTA . A . A C . CT T AT AC . . . . . . . . . CTT G . T . . . . . C C . T CCA G . . . TC . . . .
blockSeqs : . . . T ACAATGTTAAGCTGTTTGGG . C . G . . GA . AT AC . . . . CA G . . G . . . CA .
blockSeqs : . . . G . . GA . AT . .
blockSeqCons : C**** AGCACTTCCG******************* TA** CA*** TCA****** ** TA******* N* ** ** NTNTTT********** C* G** T* GACT** NC* *** ** ** NCTN** GA*** ** NCGACGGAAGTGTCG******** ** ** CAAT***** N** C** NAC
originalCons : TAANGAAGAACANNNAATNNTGATACTNCTTCCGGTTTATGANGTATCAANCTTTCCGATNGACGAATTTTNNAAACCTTNAAGCACAGTTTATGTATACTACTTATGCTTAACAAGCTTGGATGAAAGACAGTTGAAAAAAATCTGTATTNTAGTAATACTACTTCTCGGTTGACG--ACGGTAG-TGA-CG-G--CAATAAAAC-T-TGAGA-G-GT---TTTTTCATGT--AAAT--TGATTGCGAT---CTA-TCATCCC--TGA-AGGTT--TGAAGACTCTGC------CTTTAACCATAAATG-AGAAA-----CCGCACAACTTC--C--GGTTCT-TTT---AA------GC--A-CT-TCCG-----GTATCTT-CAAAG-TTCAA-AA-TAACGACTGAA---ATC-T-CCACAA----TGAG-CGT---GCAG-G-AATCATTTTT-N--AAATTTTCAATGAAAA-ACG--CTTGAATNNTCGT--GCAACT-TTCCGGTTTTGGTGAAAAACAAACTTTCCGGA-TGGACATTT-T--AAGGACTCAAAACAGTCTATACGTA---CTA--TTTCTA--AACACTT-AAAACGAAAAAAAGT--A----AAAAAAACTAC-ATTT-TT-ATA-CTACTTCCGGTGGACGAC-GG--AAGTGAC--GGCA-ANAAAATTGAAATAGATATTTC-T--T-----TCT-G-AATTGTTG-CCAATCTATCATC-CCTGAAAGTTT--GAAGAC-C--TAC-ATCTT--A---------GCATTCAG----TGTT--A---CG-GG--AAAT--CGTT--CGAA-CAAA-ATCTGAC-T-TTAA--------A---------T-----CGGCCGTATCCTC-GCGAC-CGG-AAGTGA---TTTTTGCAAAAATATTTGACGTTA--CTCTAGAGAATATTCGATGTTAATAATATGTGTAAAAATCATT-GCAAACGCTT-CACTTA-TTAAGCGAGATAT-TTGAGATTAAAAAATTGCCCGGTTTTCCATGACGTTTTTC--TCTCAAAAAA-CGG---AAATTGCCGTCTTAAACTTCGCGGATAAGTCAANCNTTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCGAGTA-----AATTTCAT--TTTCAA-AAGCATATTAAACTTGAAAATT-TC--GTTT-CT-TATTTTGGA--TCACTTCCGG--T-G-CGA-CCGGA-AGT-GTC-GGAC--GACAGCGACTAACCTTT--TA--GCAAAGCGAAAAGCACA---TCTCGA-GATNT-ACTCA-TCCCTGAAAGTTT--CAAGACTTA-AT--CTTTAAGC-GTTTAGCAAANACTCGCGCGGACAAAA-TGACA-TTTAAA-AAACGGAAAATCGGCCC
finalCons : TAANGAAGAACANNNAATNNTGATACTNCTTCCGGTTTATGANGTATCAANCTTTCCGATNGACGAATTTTNNAAACCTTNAAGCACAGTTTATGTATACTACTTATGCTTAACAAGCTTGGATGAAAGACAGTTGAAAAAAATCTGTATTNTAGTAATACTACTTCTCGGTTGACG--ACGGTAG-TGA-CG-G--CAATAAAAC-T-TGAGA-G-GT---TTTTTCATGT--AAAT--TGATTGCGAT---CTA-TCATCCC--TGA-AGGTT--TGAAGACTCTGC------CTTTAACCATAAATG-AGAAA-----CCGCACAACTTCC----GGTTCT-TTTAGCACTTCCG-------------------GTATCTT-CAAAG-TTCAA-AATA--CGACTGAA---ATC-T-CCACAA----TGAG-CGT---GCAG-G-AATCATTTTTCA---AATTTTCAATGAAAA-ACG--CTTGAATNNTCGT--GCAACT-TTCCGGTTTTGGTGAAAAACAAACTTTCCGGA-TGGACATTT-T--AAGGACTCAAAACAGTCTATCA------CTA--TTTCTA--AACACTT-AAAACGAAAAAAATA-------AAAAAAACTAN-ATTT-TT-ATA-CTACTTCCGGTGGACGAC-GG--AAGTGAC--GGCA-ANAAAATTGAAATAGATATTTCNTNTTT----------AATTGTTGC-CAATCTATCATC-CCTGAAAGTTTG--AAGAC-C--TAC-ATCTT--A---------GCATTCAG----TGTT--A---CG-GG--AAAT--CGTT--CGAAT-AAA-ATCTGACT--TTAA--------A---------T-----CGGCCGTANC-TC-GCGAC-CGG-AAGTGA---TTTTTGCAAAAATATTTGACGTTA--CTCTAGAGAATATTCGATGTTAATAATATGTGTAAAAATCATT-GCAAACGCTT-CACTTA-TTAAGCGAGATAT-TTGAGATTAAAAAATTGCCCGGTTTTCCATGACGTTTTTC--TCTCAAAAAA-CGG---AAATTGCCGTCTTAAACTTCGCGGATAAGTCAANCNTTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCGAGTA-----AATTTCAT--TTTCAA-AAGCATATTAAACTTGAAAATT-TC--GTTTNCTN--TTTTGA---TCACTTCCGG--TNCGACGGAAGTGTCG--------AC--GACAGCGACTAACCTTT--TA--GCAAAGCGAAAAGCAAT-----TCGA-GATNTN--TCA-TCCCTGAAAGTTT--CAAGACTTA-ATC--TTTAAGC-GTTTAGCAAANACTCGCGCGGACAAAA-TGACA-TTTAAA-AAACGGAAAATCGGCCC
Alignments
lowQualScore : 33 11 11 11 11 222 222 3333333 11 11 222222 222 2222 1 11 1 1 77777777777777777777777777777777777777777777777 222 1 11 1 11 222222 1 2222222 11111 55555555555555555555555555555555555 111 1111 111111 22222 222222 11 1 11 1 2222 333333333333333 11 11 11 33333333 22222 11 111111 1 11 111 9999999999999999999999999999999999999999999999999999999 11 11 111111 333333333333333333333333 111 11 1 1 1 22 1 111 222 11 1 222 1 11 11 1 1 222222222222 11 1 1 111 11 2222 1111 7777777777777777777777777 11111 11 111 11 333333 111 11 11111 111 1
lowQualScore : 1 333 22 1 00 1 1 88 1 88 22 88 1 77 111 111 2222222 88 77 999999 111 1 4444 5 88 3 3 99999999999999999999999999999999999999999999999 7 0 333 3 6 88 3 33 888888 33 0 5555555 3 1 0 22222 88888888888888888888888888888888888 1 6 6 6 99 1 111 6 6 2 4444 444444 0 8 8 22222 0 8 888888 22 2 33 3 0 3 66 55 1 3 6 6 3 2222 6 0 111111111111111 11 3 11 44 66666666 33333 1 8 8 33 6 33 5 77 77 5 7 1 3 5 0 333333 3 1 00 4 3 4 000 3333333333333333333333333333333333333333333333333333333 33 1 66 1 44 4 111111 1 666666666666666666666666 1 5 99 5 5 0 000 55 1 11 3 11 0 3 6 3 0 3 7 00 3 7 7 7 6 0 333 555 11 3 333 5 88 88 1 1 0 0 3 999999999999 0 33 0 8 0 111 11 5 9999 3333 4 8888 66 1111111111111111111111111 77 55555 99 222 6 44 444444 000 5 1 88 5 777 55555 888 6 5 4 000 7 5 5 1
lowQualScore : . ... .. . .. . . .. . .. .. .. . .. ... ... ....... .. .. ...... ... . .... . .. . . ............................................... . . ... . . .. . .. ...... .. . ....... . . . ..... ................................... . . . . .. . ... . . . .... ...... . . . ..... . . ...... .. . .. . . . .. .. . . . . . .... . . ............... .. . .. .. ........ ..... . . . .. . .. . .. .. . . . . . . ...... . . .. . . . ... ....................................................... .. . .. . .. . ...... . ........................ . . .. . . . ... .. . .. . .. . . . . . . . .. . . . . . . ... ... .. . ... . .. .. . . . . . ............ . .. . . . ... .. . .... .... . .... .. ......................... .. ..... .. ... . .. ...... ... . . .. . ... ..... ... . . . ... . . . .
lowQualScore : 0 000 00 0 55 0 0 00 0 00 00 00 0 55 000 000 5555555 00 55 000000 000 0 5555 5 33 3 3 00000000000000000000000000000000000000000000000 3 7 333 3 7 33 3 88 888888 55 0 5555555 2 0 6 00000 66666666666666666666666666666666666 4 7 7 7 22 0 777 7 7 5 2222 444444 8 0 0 66666 6 0 888888 00 5 88 2 0 2 00 88 2 2 7 7 3 7777 7 8 666666666666666 00 8 00 00 44444444 66666 0 0 0 66 7 77 7 99 99 7 5 4 0 7 1 333333 0 4 00 6 9 4 777 7777777777777777777777777777777777777777777777777777777 88 1 99 1 00 4 888888 7 444444444444444444444444 0 0 22 7 7 4 000 00 4 00 8 66 8 2 7 3 7 3 3 77 3 3 3 3 7 7 000 000 00 3 333 0 00 00 0 0 0 0 2 555555555555 8 88 6 0 0 333 66 0 9999 1111 4 7777 11 5555555555555555555555555 99 66666 00 444 0 66 999999 000 7 0 00 7 111 66666 222 0 7 3 333 6 7 7 4
consensus : TAANGAAGAACANNNAATNNTGATACTNCTTCCGGTTTATGANGTATCAANCTTTCCGATNGACGAATTTTNNAAACCTTNAAGCACAGTTTATGTATACTACTTATGCTTAACAAGCTTGGATGAAAGACAGTTGAAAAAAATCTGTATTNTAGTAATACTACTTCTCGGTTGACG--ACGGTAGT-GA-CG-G--CAATAAAACT-T-GAGA-G-GT---TTTTTCATGT--AAAT--TGATTGCGAT---CTA-TCATCCC--TGA-AGGTT--TGAAGACTCTGC------CTTTAACCATAAATG-AGAAA-----CCGCACAACTTC--C--GGTTCT--T------TT-A----GC--A-CT-TCCG-----GTATCTT-CAAAGT-TCAA-AAT--ACGACTGAA---ATC-T-CCACAA----TGAGC-GT---GCAG-G-AATCATTTTT--C-AAATTTTCAATGAAAA-ACG--CTTGAATNNTCGT--GCAACT-TTCCGGTTTTGGTGAAAAACAAACTTTCCGGA-TGGACATTT-T--AAGGACTCAAAACAGTCTA----T---CA--C--TA--TTTCTA--AACACTTAAAA-CGAAAAAAAG-TAA---AAAAAA--CTANA-TTT-TT-ATAC-TACTTCCGGTGGACGAC-GGA--AGTGAC--GGCA-ANAAAATTGAAATAG-ATATTT----CNTATTT-AATTGTTGCC-AATCTATCATC-CCTGAAAGTTT--GAAGAC-C--TAC-ATCTT--A---------GCATTCAG----T-GTT--A---CG-GG--AAAT--CGTT--CGAA-CAAA-ATCTGAC-T-TTAA--------A---------T-----CGGCCGTATC-TCG-CGAC-CGG-AAGTGA---TTTTTGCAAAAATATTTGACGTTA--CTCTAGAGAATATTCGATGTTAATAATATGTGTAAAAATCATTGCAAA-CGCTT-CACTTATT-AAGCGAGA-TATTTGAGATTAAAAAATTGCCCGGTTTTCCATGACGTTTTTC--TCTCAAAAAA-CGG---AAATTGCCGTCTTAAACTTCGCGGATAAGTCAANCNTTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCGAGTA-----AATTTCAT--TTTCAA-AAGCATATTAAACTTGAAAA-TT-TC-G--TTTCCTATTTT-G---ATCACTTCCGG--T-G-CGA--C-GGA-AGT-GTC--G-AC--GACAGCGACTAACCTTT--TA--GCAAAGCGAAAAGCA-AT-TCG---A-GATNT-NTCA-TCCCTGAAAGTTT--CAAGACTTA-AT--CTTTAAGC-GTTTAGCAAANACTCGCGCGGACAAAA-TGACA-TTTAAA-AAACGGAAAATCGGCCC
Reference ( family-3404 ) : TAANGAAGAACANNNAATNNTGATACTNCTTCCGGTTTATGANGTATCAANCTTTCCGATNGACGAATTTTNNAAACCTTNAAGCACAGTTTATGTATACTACTTATGCTTAACAAGCTTGGATGAAAGACAGTTGAAAAAAATCTGTATTNTAGTAATACTACTTCTCGGTTGACG--ACGGTAGT-GA-CG-G--CAATAAAACT-T-GAGA-G-GT---TTTTTCATGT--AAAT--TGATTGCGAT---CTA-TCATCCC--TGA-AGGTT--TGAAGACTCTGC------CTTTAACCATAAATG-AGAAA-----CCGCACAACTTC--C--GGTTCT--T------TT-A----GC--A-CT-TCCG-----GTATCTT-CAAAGT-TCAA-AAT--ACGACTGAA---ATC-T-CCACAA----TGAGC-GT---GCAG-G-AATCATTTTT--C-AAATTTTCAATGAAAA-ACG--CTTGAATNNTCGT--GCAACT-TTCCGGTTTTGGTGAAAAACAAACTTTCCGGA-TGGACATTT-T--AAGGACTCAAAACAGTCTA----T---CA--C--TA--TTTCTA--AACACTTAAAA-CGAAAAAAA--TAA---AAAAAA--CTANA-TTT-TT-ATAC-TACTTCCGGTGGACGAC-GGA--AGTGAC--GGCA-ANAAAATTGAAATAG-ATATTT----CNTNTTT-AATTGTTGCC-AATCTATCATC-CCTGAAAGTTT--GAAGAC-C--TAC-ATCTT--A---------GCATTCAG----T-GTT--A---CG-GG--AAAT--CGTT--CGAA-TAAA-ATCTGAC-T-TTAA--------A---------T-----CGGCCGTANC-TCG-CGAC-CGG-AAGTGA---TTTTTGCAAAAATATTTGACGTTA--CTCTAGAGAATATTCGATGTTAATAATATGTGTAAAAATCATTGCAAA-CGCTT-CACTTATT-AAGCGAGA-TATTTGAGATTAAAAAATTGCCCGGTTTTCCATGACGTTTTTC--TCTCAAAAAA-CGG---AAATTGCCGTCTTAAACTTCGCGGATAAGTCAANCNTTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCGAGTA-----AATTTCAT--TTTCAA-AAGCATATTAAACTTGAAAA-TT-TC-G--TTTNCTNTTTT-G---ATCACTTCCGG--T-N-CGA--C-GGA-AGT-GTC--G-AC--GACAGCGACTAACCTTT--TA--GCAAAGCGAAAAGCA-AT-TCG---A-GATNT-NTCA-TCCCTGAAAGTTT--CAAGACTTA-AT--CTTTAAGC-GTTTAGCAAANACTCGCGCGGACAAAA-TGACA-TTTAAA-AAACGGAAAATCGGCCC
gi|1 : TAATGAAGAACACCAAATTTTGATACTACTTCCGGTTTA-GAAGTATCAATCTTTCCGATTAATGAATTTTGGAAACCTTCAAGCACA---TATGTATATTACTTATGC--AACAAGCTT--ATGAAA------TGAAAAAA---TGTATTGTAGTAATACTACTTCTCGGTGGACGGTACGGTAGTTGA-CGTG--CAATCAAACT-TTGAAATGTGT---TTCTTCATGTCAAAAT--TGATTGCAAT---CTAGTCATCCCCTTGA-AGGTT--TGAAGACTCTAT------CTTTA-CCATAAATG-AGAAAACATTCCGCACACTTTCGGC--GGTTCT--T------TT-AAAAAGC--AGCTGTCCG-----GAATCTT-CAAAGCCTCAC-AATTCACGACTAAA---ATCAT-CCACAA----TGAGCCGA---GCAGCGCAATGATTTTTG-C-CAATTTCCAATGAAAACATG--CCTGAATTTTCGTTAGCAACTGCTCCGGATTTGG--GAAAACTAACTTTCCGGA-TGGACATCT-T--AAGGACTCAAAAC-GTGTACGTGT---AAGCC--TAATTTTCTA--AACACTTAAAA-CGAAAAAAAG-TAA---AAAAAAAATTGCAATCT-TT-ATAC-TACTTCCGGTGGACGAC-GGACAGGTGACCTGGAA-AAGAAATTGAAATAG-GTATTT----CTTTCTGGAATTATTGCCCAATCTATCATCACCTGAAAGTTTTGAAAGAC-C--TAC-ATCTT--A----------CATTCAG----TTGTT--A---TGAGG--AAAT--CATT--CAAAGCAAA-ATCTCAC-TCTTAA--------A---------T-----CGGCCATATCCTCAACGACGCGGCAAGTAAAACTTTCTGTAAA--TATTTGACGTTAGGC-CTAGAGAATATCAAATGTTAATAATATGTGTAAAAAT-ATTGGAAAACACTTGCACTTATTTAGGCGCGAATATT-GAGATTAAAAAATTGCCCAGTTTGCCATGACGTTTTTC--TC----AAAA-CGGCGAAGATTGCCGT-TTAAACTTCGCGGATAAGTCAAACTTTTCTAAAAA-CTGCAAAGACCACCTGATTTATCACAATATGCACAGTTTTAT--TTTCAACAAGCATATT--ACTTGAAAATTT-TC-AATTTTTATATTTTGG---ATCACTTCCGGTTT-G-CGACCC-GGATAGTCGTCAGG-ACCGAACAGCGGTTAACCTTTC-TG--GC--AGCAATAAGCACATCTCG---A-GATATACTCATTCTCTGAACGTTT--CAAGACTTA-ATTCCTTTAAGC-GTTTAGCAAAAAATCGCGTGGACAAAATTGACA-TTTAAA-AAACGGAAAATCGGCCC
gi|10 : C-TATTTTCGGTGGACGAC-GGA--AGTGAC--AGCA-ATACAATTAAAATGC-ATATTT----TTTATTT-TATTGTTGCC-ACT-TACCATC-CCTGAAAGTTT--CAAAAA-----ACAATCTT--GAATAAAACTGCATTTGG----T-AAT--AATGCG-TG--CAAT--AATT--AAAT-TAAAGATCT--C-T-TTAA--------A---------T-----ccgta
gi|11 : T--TGAAGACTCTAC------TTTTAACCATAAACG-AGGAA-----ATGCATAACTTC--C--GGTTTT--T------TA-A----GC--A-CT-TCCG-----GTATCTT-CAGAGT-TCAA-AAT--ACATCTGAA---ATC-T-CAACAA----TG
gi|12 : AA-GAAA-ATCTCAC-T-TTAA--------A---------T-----CGGCCATATC-TCA-CGAC-CGG-AAGTAA---ATTTTGTAAAAATATTTGACGTTA--GCCTAGAGAATA-TCAATGTTAATAATATGTG
gi|13 : aGACTTAAAACAGTCTA----T---TA--C--TA--ATCCCATCAACATTTGAAT-TTAAAAAAA--TAATTTAAAAAA--ATTGA-GTA-TG-ATAA-TACTTCCGGT-------------ATTGAC--GGCA-A
gi|14 : ctT-TCG---A-GATGT-ATCA-TCTCTGAAAGTTT--CAAGACGCA-AT--CTTCAAGC-GTTTAG-AATAAATCGCGTGGACAAAA-TGACA-TTTAAA-AAt
gi|15 : tgcacaatataatTCAA-AAGCATA---AACTTGAAA--TT-TC-A--TTTC--ATTTG-G---ATCACTTCCGG--T-ATCGA--CCGGA-AGT-GTC--GGAC--GACAGCGACTAACCT
gi|16 : -CAAAGT-TCAA-AAT--ACATCTGAA---ATA-T-CCACAA----TGGGC-GT---GTAG-G-AATCATTTCT--A-CAAGTATCAATGCAAA-A
gi|17 : TATTTC-G---ATTACTTCCGG--T-TTCGA--CCGGA-AGT-GTC--GGAC--GACAGCGACTAACCTT
gi|18 : AAAGCA-ATCTCG---A-GATAT-ATCA-TCTCTGAAAGTTT--CAAGACTTA-AT--CT
gi|2 : tgcacGTTGGCG--ACGGTAGT-GAGCG-GATCA-TAAAATTGT-GAGA-AAGTAAGTTTTTCATGT--AGAAGATGATAGCGATTTTCTA-T-ATCGC--TGAGAGGTTGTTGAACACTGTGCTTAGAACTATAATTATAGATGTAGAAA-----TGGCA-AACGTG--CAGGGTTCTGTTCAAAAGTT-A----GCTGA-TT-TCGGCAGGAGAATCTTTCAGAGC-TCAATAAG--A-GACTGAA---ATC-T-C-GCAACTACTGAGC-GTTGTGC-G-G-AATCATTTTTTGC-AAATTTTCAAT-AAAA-ATG--CT-GAATTGTCGT--GCAACT-T-CCGGTTGTGGTGAAAAAGAAACTATCCGGGGTGGACAATTAT--AAGGACTCAAAACAGTCTA----TATGCA--C--TA--TTTCGA--AACACTTAAAAACGAAAAAAAG-TAA---AAAA-----TACA-TTTATT-ATGCCTACTTCCGGTGGACGAC-GGA--AGTGAC--GGCA-AAAAAATTGAAATAA-A-ATTT----TCTATTTGAATTATTGC--AATCTATCATC-CCTGAAAGTTT--GAAGAC-C--TA--ATCTT-------------CATTCA-----T--TT--A---TT-AG--AAAT--TGAT--CGAA-CAAA-ATCTAAT-T-TGAA--------A---------T-----CGGACATATC-TCA-CGAC-CGG-AAGTTA---TTTTGGCAAAAATATTTGATGTTG--CTCTAGAGAATATT-GATGTTAAAAATATGTGTAAAAATCATTGCAAA-CACTT-CAATTATT--AGCGAGA-TATTTGAGATTAAAAAA-TG-CCAGTTTTC--TGACGTTTTT---TCTCAAAAAACCGG---AAGTTG
gi|3 : cgaACAACTTC--C--AGTTCT--T------GT-------C--A--------------TGCCTT-TGAAGT-TCAT-AAA--ACGAATGACCGTATA-TACCATAT----TGAGC-AC---GCAG-G-TATCATCTCT--C-AATGTTTTAAAGAAAA-ACAAAC---AATGATGAT--ACT-CT-TTCCGGTTTATATGTAT--CAAA-TTTC--GA-TGGACATTT-TCTAA---CTTAAAACAGTTTA----T---TA--C--TA--TT-CTT--AACATTTGGA--TAAAAGACAGTTGA---AAAAAAT-CTATA-TTT-T--AGAT-TACTTCCGGTTAATGAT-TGT--AGTGAC--GGCA-A-----------TAG-AT------------TTT-AATTGCTGC--AATCCATCATC-CCGGAACGTTT--GAAGACTC--TGC-CTTTA--A---------GCATT
gi|3 : attaaacttgcatagataacacacaaagagattaaatttatcaattccaaTAAAGAAAAACAAACAATGATGATACTCTTTCCGGTTTAT-ATGTATCAAATTT--CGATGGAC--ATTTTCTAA--CTTAAA--ACAGTTTAT---TACTATT----CTTAACA--TTTGGATAAAAGACAGTTGAAAAAAATCTATATTTTAG----ATTACTTC-CGGTTAATG--ATTGTAGT-GA-CG-G--CAATA-------------G-AT---TTT----------AAT--TG-CTGCAAT---CCA-TCATCCC--GGA-ACGTT--TGAAGACTCTGC------CTTTAAGCATTAATG-AGAAA-----CCGCCCATCGTC--C--ACTTCT--T------TTCAT---GC--A-CT-TCCG-----GTATCTT-CAAAAT-TCAA-AAT--ATGACTAAA---AAC-T-CCACAA----TGAAC-GT---GCAG-G-AATCATTTTT--CGAAATTTTTAATGGAAA-ACG--CTT-AATGTTGGT--ACAACT-TTCTG--TTTG--GAAAAACaatgagaaaccgcccatcgtccacttcttttcatgcacttccggtatcttcaaaattcaaaatatgactaaaaactccacaatgaacgtgcaggaatcatttttcgaaatttttaatggaaaacgcttaatgttggtacaactttctgtttggaaaaacggctttttagtgaaaatattctgaattcagatagttatttcatatg
gi|4 : attaaacttgcatagataacacacaaagagattaaatttatcaattccaaacaacttccagttcttgtcatgcctttgaagttcataaaacgaatgaccgtatataccatattgagcacgcaggtatcatctctcaatgtttAATTCAGATAG-TTATTT----CATATGT-AGTTGTTGTC-A-TATATCATC-AATGAACGTTTT-GAAGAC-T--CAT--TCCT-------------CATTCA-----T-AT---A---TG-TA--AACT--CGTT--TGAA-TAAA-ATATAAT-T-TTAAGAGTAGAAA---------T-----CGGTCACATC-TT--TGGC-CGG-AAGTAA---TTGTTGCAAAAATATTTAAAATTA--CTTTACAGA-TGTGTGATGTCAATAATGTGTGTGAAAATCATTACAAA-CGCTT-CACTTA-T-AAGCGAAA-TATGTGAGATT-GAAAATTGCCAGATTTTTCA--ATGTTTTTCTATTTTAAAAAA-CGG---AAATAGCCGTCTTAA--TTTGCG--TAAGTCAATCATTTTA-GAAATCTGTAAAAGAAACCTAA-TTAG--GG-------------CATGATTTCAA-AAGCA---TAAACTTG-AAA-TT-TCAG--TT---TATTTT-G---ATCACTTCTGG--TGA-CTA--CTGGA-ATA-GTCA-G-AC--GGCAGAGACAAAC--TT--TAATGCAAAGCAAAAAGTA------G---A-GATTT----A-TCCATGAAGGTTT--CAAGATTT--AT--TATCAACC-GTTTAGCAAAAA-TCTCCCAAAGAAAA-TGACA-CGAAAATAAACGGAAAATCGGggctttttagtgaaaatattctgaattcagatagttatttcatatg
gi|5 : tagtgaaaatattctgAATTTGAA---TTCTC-G--TTTC---TTTT-A---TTCACT-CCGG--T-G-CGA--C-GGA-AGT-G-------C--GCCAGGAACAAAACTTTAGTA--CCTAATTCACACACA-AT-TTGTCCACGATATAATCA-TCCCTGAAAGTTT----AGAC-CA-AT--CTTAAACC-G-TTAGGAGAAACCTGT-CGGACAACA-T-ACATTTTAAACAAACGGAAAATCGGACC
gi|6 : gaaacttacatgttctaggattattcagacatGACTCAAAATAATCTA----A---CA--CACTA--TTTTTA--AACACTCAAAA-TGAAAAAAA--------AAAACA--CCAAA-TTT-TTTATTC-TACTTCCGGTGGACGAC-GGA--AGAGAC--GGCA-ATAAATTTGAAATAA-GTATTT----CATTTCT-ATTTGTTGCC-A-TCTATCATA-TCTGAAAATTT--GAAGAC-CACTAT-CTTTT--T---------GCATTTA-----T-GT-----------A--AAAT--CGCT--CTAA-TGAA-ATCTAAT-T-TGAA--------AAAAG-----TAAAAATGTCCATATC-TCA-CAAC-TGG-AAGTGA---GTTTTGCAAAAATATTTAATGTTT--CTCTAGAT-ATGTTAGATGTCCATAATATGTGTAAAAATgctactgtatttttcacgacggaagtgtttttgaaaatgaaaaaaaatgatctagaacttatcccgaataagtttcctgaaagttttcatagaaagatccattagggcagaggttgaggtgtccattttccgagaaatcgcgtgcacaatcgtagagaaaaagagggacataactag
gi|7 : TTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCAAGTA-----AATTTCAT--TT--AA-AA--ATATTAAATTTGAAAT-TT-CT-G--TTTACT--TTT-G----TCCCTTTCGG--T-T-----------------------AC--GACAA-----AACCTTT--TA--ACAAAG-GAAAAG------TCA---A-GATCT-CTCA-TCCCTGAAACTTT--TACGA-TTATAT--CTTTAAGC-GTTTAGCAAAT-CTCGCACGGACAAAA-TGGCA-TTCAAA-AATCTGAAAATCGGC
gi|7 : atATCTCTCATC-CCTGAAACTTT--TACGAT----TAT-ATCTTTAA---------GCGTTTAGCAAAT-CTCGCA---CG-GACAAAATGGCATT--CAAA----A-ATCTGA------AA--------A---------T-----CGGCAGTAAC-TCG-CGAC-CGG-AAGCGA---TTTT--CAAAAagtaactcgcgaccggaagcgattttcaaaacaagaaatgaggttttcgagtctatatt
gi|7 : attttttaaaactgtaaaagaaacctaatttagccaagtaaatttcatttaaaaatattaaatttgaaatttctgtttacttttgtccctttcggttacgacaaaaccttttaacaaaggaaaagtcaagATAT-AGACTCGAAAA-CC-TC-A--TTTCTTGTTTT-GAAAATCGCTTCCGG--TCG-CGA--caagaaatgaggttttcgagtctatatt
gi|8 : attttttaaaactgtaaaagaaacctaatttagccaagtaaatttcatttaaaaatattaaatttgaaatttctgtttacttttgtccctttcggttacgacaaaaccttttaacaaaggaaaagtcaagatctctcatccctgaaacttttacgattatatctttaagcgtttagcaaatctcgcacggacaaaatggcattcaaaaatctgaaaatcggcagtaacTTTTT-AAAA-CTGTAAAAGAAACCTAATTTAGCCAAGTA-----AATTTCAT--TT--AA-AA--ATATTAAATTTGAAAT-TT-CT-G--TTTACT--TTT-G----TCCCTTTCGG--T-T-----------------------AC--GACAA-----AACCTTT--TA--ACAAAG-GAAAAG------TCA---A-GATCT-CTCA-TCCCTGAAACTTT--TACGA-TTATAT---TTTAAGC-GTTTAGCAAAT-CTCGCACGGACAAAA-TGGCA-TTCAAA-AATCTGAAAATCGGCt
gi|8 : atATCTCTCATC-CCTGAAACTTT--TACGAT----TAT-ATTTT--AA--------GCGTTTAGCAAAT-CTCGCA---CG-GACAAAATGGCATT--CAAA----A-ATCTGA------AA--------A---------T-----CGGCAGTAAC-TCG-CGAC-CGG-AAGCGA---TTT---CAAAAagtaactcgcgaccggaagcgatttcaaaacaagaaatgaggttttcgagtctatatt
gi|8 : attttttaaaactgtaaaagaaacctaatttagccaagtaaatttcatttaaaaatattaaatttgaaatttctgtttacttttgtccctttcggttacgacaaaaccttttaacaaaggaaaagtcaagATAT-AGACTCGAAAA-CC-TC-A--TTTCTTGTTTT-GAA-ATCGCTTCCGG--TCG-CGA--caagaaatgaggttttcgagtctatatt
gi|9 : attttttaaaactgtaaaagaaacctaatttagccaagtaaatttcatttaaaaatattaaatttgaaatttctgtttacttttgtccctttcggttacgacaaaaccttttaacaaaggaaaagtcaagatctctcatccctgaaacttttacgattatattttaagcgtttagcaaatctcgcacggacaaaatggcattcaaaaatctgaaaatcggcagtaacCCAGTG-ACGACCGGA--AGTGA---AGTACACAAAA-----ATAGTATGTCTAATGCACATCT-GAATGT---C-AAT-----AGT-CCTGAAAGTTT--GACGAA-----ACAATGTTA-A---------GC----------T-GTT------TG-GG--AGAT--ACCTGACGGA-CAAA-A--TGACAT-TTAA--------AAACGTAAACT-----TGGCCGTAAC-TCG-Ct
gi|9 : CCTGAAAGTTTGACGAAAC--A-AT--GTT-AAGCTGTTTGGGAGATACCTG-ACGGACAAAA-TGACA-TTT-AA-AAACGTAAACTTGGCCttattttt