lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 1 22 44 111 222 1 111 11 111 11 33333 1 1 2222222 11 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 1111 111 1111 11111 22222 2222222 11 3333 3333333 444444 1 3333333 1111 1 1 55555555555555555555555555 1 222 111 333333333333333 1 777777777 222 1 2222 1 33333333 1111 111 1 11 111 22 111111 2222222 444 11111 444444
lowQualScore : 77 5 77 77 4 0 777 666 0 88 0 333 8 8 8 99 444 11 8 5 6 2 22222 77 6 0 2 5555555 33 0 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 7777 8 444 8 0 5555 8 8 22222 88888 1111111 1 99 88 3 6 6 11 0 1111 9 8 2222222 222222 0 6666666 7777 0 0 00000000000000000000000000 0 666 666 444444444444444 0 2 666666666 2 666 0 1111 0 66666666 4444 111 6 3 6 6 00 111 55 6 111111 1111111 1 1 6 6 6 77 5 333 5 22222 5 66 5 333333 5
lowQualScore : .. . .. .. . . ... ... . .. . ... . . . .. ... .. . . . . ..... .. . . . ....... .. . ............................................................................................................................................................................................................................................................................... .. .... . ... . . .... . . ..... ..... ....... . .. .. . . . .. . .... . . ....... ...... . ....... .... . . .......................... . ... ... ............... . . ......... . ... . .... . ........ .... ... . . . . .. ... .. . ...... ....... . . . . . .. . ... . ..... . .. . ...... .
lowQualScore : 55 5 55 55 0 7 555 888 0 66 8 666 0 0 0 00 000 00 0 4 0 2 22222 55 8 0 5 5555555 88 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 00 0000 0 000 0 8 4444 0 0 00000 00000 7777777 0 22 33 7 7 7 00 8 0000 8 0 5555555 222222 0 2222222 8888 0 0 00000000000000000000000000 0 000 222 222222222222222 0 0 222222222 5 222 0 2222 0 88888888 2222 777 7 3 7 7 22 777 00 7 000000 7777777 0 0 7 7 7 99 7 111 0 55555 0 99 0 111111 0
consensus : TAGAAAGGGAGTCTATTCATGGTCCCCAGATTGATCANAAAGA---GTGTATT-N-TGG-TTGTT-TTGGTGTTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGAGATGACAGAA--ATGAAAAAAAAAATG-TGG--C-AA-TA--GCC-CGCTAAGC-CT---TCAGCTT-CA-TGC-AAAA-----TTTC----T--ATTC--A--A---AT-ATGC-TGAAA-------TTAA-C-CAAA------ATAA---TGA--------T---TCAC-AANTACT--TGAT-A--AG------AATG-GTTGCGT---------CA-TA---CGT-TAC------TC------------------A--TCNT--A-GAA-TAGTT-GCATCC--TA---CG---TTACAT-CAAANA-ACA---AAC-GTATAACA--TGA----TT-TTG---GT-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGGAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGCTTCTGGA-GCTT-------CAAA--AG--AACAAAA-GTTATAT----NN-AAA-G--TTTACTG-TTTTTTGT-C-A-T-TG-CCGCAGATAAG-------TG-CAGA-GTGTTT--GGGGAAACGG-T------GCA----TCT-TTTGAT--AG-T-TATTTGTAGNAT-CAAAA-GATGC----TTAT-GGCATTC--C---GACAGTGC----AACG---A-CTTG-CTTA-TTT-TGAGAACATAAGCTTT-ATT---AGAGCTATAAA--ATCAA-A--TA--CACG-------TTCCTCTGGTTTCTCCCAA-CGTTAAA-TCCCCAT-AAGGA--AT-AGTTC-GATCC-GA-----CGTG-A--C-GGAATAGTTGGATCA-GAGTAACGATGTGTCACGGT
Reference ( gi|4 ) : TAGAAAGGG--TCTATTCAT--TCCCCAGATT--TCATAAGGA---GTGTATT-T-TGG-TTGTT-TTGGTGCTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGATATGGCAAAA--A--AAGAAAGAAATG-TGG--C-AA-TA--GCC-CGCTAAGC-CT---TCATCTT-CA-TGC-AAAA-----TTTC----T--ATTC--A--A---AT-ATGC-TGAAA-------TTAG-C-CAAA------ATAA---TGA--------T---TTAC-AAATGCT--TGAT-A--AG------AATG-GTTGTGT---------CA-TA---TGT-TAC------TC------------------A--TCCT--A-GAA-TAGCT-GCATCC--TA---CG---TTACAT-CAAATA-ACA---AACCATATAACA--TGG----TT-TTG---GT-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGAAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGCTTCTAGA-GCTT-------CAAA--A---AACAAAA-GTTATAT----CC-AAA-G--TTTACTG-TTTTTTGT-C-A-T-TG-CCACATATAAG-------TG-CAGA-TTGTTT--GGGGAAATGG-T------ACA----TCT-TTCGATTTAT-T-TATTTGTAGCAT-C-AAA-GATGC----TTAT-GGCAT----C---GACAGTGC----AACG---A-CTTG-CTTA-TTT-TGAGAACATAAGCTTT-ATT---AGAGCTATAAA--ATCAA-A--TA--CACG-------TTCCTCTGGTTTCTTCCAA-TGTTAAA-TCCCCAT-AAGGA--AT-AGT---GATCC-GA-----CGTG-A--C-GGAATAGTTGG-TCA-GAGTAACGATGTGTCACGGT
gi|1 : TAGAAAGGGAGTCTAT-CATGGTCCCCAGATTGATCAGAAAAATACGTGTAATAT-TGG-TTGTT-T--GTGTTTTA-TGAT-AAATGAGAGATGTACAAACTATTGATATGACAAAA--A--A-GAAACAAGTGGTGGGAC-AAATAAAGCCACGCTAAGC-CTCATTCTTCTTACA-TGC-AAAA-----TTT--------ATTC--A--ATAAATTATGCATGAAAA------TTAAAC-CAAA------A--A---TGAAGAGCGATT---TTAC-AAATGCT--TGAT-A--AAGGGTGCATTG-GCTGTGT---------CAATA---CGTCTACATTCTTTC------------------ACTTCCTTTATGAT-TAGCT-GCATCC--TA---CGCTTTTCCATGCCAATATACAGTGAACAAT-TAACACTTGG----TTATTGTGTGTTGGATCTTCATTTTCATTCAATTGTTTTTTGTCCAATTAGTAGAAGTTATCGTAACGTAAAACAAAGTACATATCTTTTAATATAGT--TTTA-TAAG-GC--CCAGATGCTTTCAAGATCAAA--AGCGAACAAAAAGTTGTATATTTCC-AAA-AGTTTTACTG-TTTTTCGTGC-AATATG-CCG-ATACAAGATTAAGCTGACAGAGTTGTTTTGGGGGAAATGG-TTTGAGCACACCGCTCT-TTCGAT--AG-TATATTTGTAGCAT-C-AAAAGATGCAATTTTAT-GGCACTTTCC---GACAGAGCGGCAAACGTATATCTTGGCTTA-TTT-TGA-AACGTATGTTTTTATTTATAGAGGTATAAACCATCAA-AATCAGCCACG-------T-CTTCTGGTTTCTTTCAACTGTTAAAATCCCCAT-AAGGACCGTGAATTTGGATCCCGAAATTACGTG-AAAC-GGAATAGTT
gi|7 : ttggtaagaaatatgcattatcaagcgcttatgaaagcttagaattaacacaacattttatatagtggcattgaataatatgctgccagacagaccatgagaatagcaaaataccacacgtgagcggtcgggcttatagggggggcggggggggagataattcatgctatttccgatgaatatcctcaaaactctaatatctttatgcaatcgtatatgtccactataaatatatattagacatgtcatctgtgcctaataattgaaaaataacatgtgcatgattttgttttccaactagggtaaaggcggtcattttcattgtgatttcatccgtaacttaaaggtaaagcaatttctaaatgttctagaaaagagtgaaatgaaatagacacgttgattgacatatttggcgtcaatccactcggcgtccaggcttttcgtaacgcgatggaatttttgcatccgcaccctcccaacgttctcaattaggatacacgattagacaatactcccgagtctggaaaacaaaatttgcaagaacatttctgcagatttgcccggctattaactttcaaccgcattttcccagagatataagAAAAG--TCTATTCAT--TCTCCAAATTG-TCATATGGA---ATGCATT-G-TGG-TTGTT-TTGG-AATA-A-ACAT-A--TGA---ATGTA--AAC-ATTAAGTTGACAGAA--ATGAATAAA-AAATT-T------AA-TA--GCC-CGCTAAGC------------T-CA-TGC-GAAA-----TTCC----T--CTTTAAA--A---AT-ATGA-TGAAA-------TTAA-C-CAAA------AAGT---TGC--------G---TCGC-AATTACT--C-AT-CCTAG------AATA-GTTGCAT---------CC-TA---CGT-TTC------T------------------------TT--A-GAA--A------AT-C--TA----------------AGATA-A---------------CA--TGG----TT-TTG---GC-GG-TA---ATTT-CATTTAAT-GTTTT--G--CA-----TGAAAGT-------GTGTTA--CAAAGTA-----CTTT-AA-cgattc
gi|3 : tttgctacatgtagtactttgatatattcgaagtaataaagtgacctctcatcttcacattatagcctgggcttaagtatgACAAAGC---GTGTATT-G-TGGGTTGTGATTGGT--TT-A-TGATTA--GGA---ATGTA--AAC-ATTGAGATGACAGAA--ATGAAAAAAAAAATG-TGG--C-CG-TA--GCC-CGCTAAGC-CT---TCAGC---CA-TG--AAAA-----TTTC----T--TTTC--AGAA---AT-ATGC-TGAAA-------TGAG-C-TAAA------ATAA---TGA--------T-----ACCAAATGCT--TGATTA--AG------AATGCGTTGTGT---------CA-TA---CGT-TAC------TC------------------A--TCGT--A-GAAATAGTTTGCATCTAGTG---GA---TTATAT-TAAA-A-ATA---AA--GTATAA-A--TGAAAAATT-TTG---GT-GAATT---ATTT-CATTCAAT-GTTTT--G--CAG----TGGAA-T-------AGATAA--CAAACAAT-TTTCTCT-AA-ATAGTTCTTTAATAGG---TTCT-GA-GTTT-------CAAAAGA---AACAAAA-GTTATAT----GA-AAA-G--TTTACTG-TGTTTTGT-CAA-T-TGCCCACAGATAAG-------TG-CAA---TGTTT---GGGAAACGGTT------GCA----TCTATTTGA---ATAT-GAATTATAGAATAA-AAA-GATGC----TTATAGGCAT----TCCAAATAGTGC-----ACG---A-CTTGCCTTATTTT-TGAGAACATAA-CATT-ATT-----AACT-TAAAT-ATCAATA--T---TACA-------TTCCCATGGTTT-TTCTTA-CGTTAAA-TCCCCATAAAGGA--AT-AGT---TAATC-GA-----CGTG-A--CGGGAATAGTTGGATCA----T-ACGATGTGTCAtaagaaaatctggagaa
gi|2 : cacaaagcatcttttaatgctacaaactgacaaat---GTGTATT-CGTGG-TTGTG-TTGGTGTTT-AATGAT-AG-CGA---ATGTA--AAC-ATTGAGATGACAGAATGA--AAAAAAAAAATG-TGG--CCGA-TA--GCC-CGCTAAGCACT---TCAGCTC-AA-TGCAAGAATTTCTTTTCAAAAT--ATGCTGA--A---AT-TAGC-TAAAATAAATGATTA--C-CAAATGCTTGATAAGAATGG--------TGTGTCAT-CGTTACTCATCGT-A--GG------AATA-GTTGCAT---------CC-TAGTGTGT-TAT------ACCGGTATTAAAAAATAAATN--TCGT--A-GAA-TAGTT-GCATCC--TAGTGTG---TTATAT-TAAAAA-ATA---AA--GTATAACA--TGA----TT-TTG---GT-GAATT---ATTT-CATTCAAT-GTTTT--G--CA-----GGGAAGT-------AGATAA--CAAACTAT-TTTCTCT-AA-ATAGT--TTTAATAAGAG-TTCTGGA-GTTT-------CAAA--AG--AACAAAA-GTTATAT----GA-AAAAG--TTTACTT-GTTTTTGT-C-A-T-TG-CCACAGATAAG-------TG-CAAG-GTGTTA--GGGGAAACGG-T------GCA----TCT-TTTGATATG-----ATTTGTAGAAT-CAAAA-GATGC----TTAT-GGCATTC--C---AATAGTGC----AACG---A-CTTG-CTTA-TTT-TGAGAACATAAGCATT-ATT---AAAGCTATAAAATATCAA-A--TA--TACA-------TTCCTCTGGTTTTTCTTAA-CGTTAAA-TCCCCAT-AAGGA--AT-AGTTC-AATCC-GA-----CGTG-A--C-GGAATAGTTGGATCA----T-ACGATGTGTCACGGT
gi|24 : cGTT-TTGGTGTTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGATAg
gi|6 : TT-CAATAC-AACA-----TCTC----TGAAATG--A--A---AT-A-----GAAG-------TTGA-TGCAAA-------------TGA--------A---CTAC-AAGTA-----GAT-A--A--------AT---TTGTGTAACTAGGATCAGTA----GT-TAC--------------------------A---CCT--A-GAA-TAGTT-ACATCC--TA---CG---TTACAT-CAAAAA-ACA---AAC-A-ATAACA--TGA----TT-TTG---GG-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGAAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGC-TCTGGA-GCTT-------CAAA--AG--AACAAAA-GTTATAT----CCAAAA-G--TTTACTGTTTTTTTGT-C-A-T----------------------TG-TAGA-GTGTTT--GGGAAAATGG-T------GCA----TCC-TTTGAT---G-T-TATTTGTAGCAT-CAAAA-GATGC----TTAT-GGCATTC--C---GGCAGTGC----AACG---A-CTTG-CTTA-TTT-TGAGAACATAAGCTTT-ATT---AGAGTTATGAA--ATCAA-A--TA--CACG-------TTCCTTTGG
gi|8 : T-------ACATAT--CAAAGTAT-TAGCTTA-AT-ATAGT--TTTAATAAGAGC-TCTGGA-GCT
gi|11 : T----C---GACAGTGC----AACA---A-CTTG-CTTT-TTTCTGAGAACCTATGCTTT--TT---AGAGCTATAAA--ATCAA-A--TA--TACA-------TTCCTCTGGTTTCTCCCAA-TGTTAAA-TCCCCAC-AAGGA--AT-AGTTC-AATCC-GA-----CGTGTA--C-GGAATAGTTGGATCATAAGTAAC-ATGTGTCACGGTannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccgacagtgcaacgacttgcttattttgagatcataagcttttttagagctataaaatcaaatacacgttaataattcctccgatttctcccaatgttaaatctccataaggaatagttggatccgacgtgacggaatagttggatcagagtaacgatgtgtcacggtga
gi|8 : catt----C---GACAGTGC----AACG---A-CTTG-CTTA-TTT-TGAGATCATAAGCTTT-TTT---AGAGCTATAAA--ATCAA-A--TA--CACGTTAATAATTCCTCCGATTTCTCCCAA-TGTTAAA-TCTCCAT-AAGGA--AT-AGTTG-GATCC-GA-----CGTG-A--C-GGAATAGTTGGATCA-GAGTAACGATGTGTCACGGT
gi|15 : tacatatcaaagtattagcttaatatagttttaataagagctctggagctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncTTCTCCCAA-TGTTAAA-TCCCCAT-AAGGA--AT-AGTTG-GATCC-GA-----CGTG-A--C-GGAATAGTTGGATGA-GAGTAATGATGTGTTACGGTga
gi|22 : GA--AT-AGTTG-GATCC-GA-----CGTG-A--C-G---------------GAGTAGCGATGTGTCACGGTga
gi|21 : ---GATCC-GA-----CATG-A--C-GGAATAGTTGGAT---GAGTAACGATGTGTTACa
12 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): TAGTAAGTAAAATGCATATCAAGCGTTATGAAAGCTTTAAATCCAGACTGAATACAAATACTCACGTGAGCGGGGGGAGGGGGGGGGAGGGGGCGGGGAGGAGGGAAGAGATAACAGCTTTTCCATCCATGAATTCCAAAAACTTTATCTTTATCCAATCGTAATGTCCAACTATAAAATAATATTTAGTAATCTGCTAAAATTAGATACTATGCATGATTTTGTTTTCCAACATAGGTAAGCGCATTTTCATTATTTCATCGTAATTTTAGTAAGCCAATTTCTAATTGTAGAAAGATAAATGAAATAGACACGTTGATTGACAAGTCTTCCACGGCGACCGCTTTCGTACGCTGATGATTTTGCTCCTCCTCCCAACGTTCTAAATTTGACAATAGGCCAGTCGAAAAAATTTGCAGAAACATTTCTGCAGATTGTTTGTGCTTATAACTTCAACGGTTTCCAAAAAA
Unaligned ( gi|9 ): CAATCGCAATATACACTATAAATTCACAGGATTCGCAAAAATATAGATATTATGCTGCTATTTACGCATGATTTTGTTTACAACTTTGGTAAGCGCATTTTTTTTTTCAACTTTAGAAAGTACATTTTGATAATTGGAAAAAGACTAAGGCAAATTCAATATCGTAGAAAGAATTTAAAATGAAATAGACACATCTTCCACGGCGACCTCAACATTAGCTTTTCCACGACAGTGGTGATGATTTGGCTCCGCCTACTATATGTTCTACTTGTCAGTCCAAACAATTCGCTGAAAACCTGCGCTTCAAACTTTAACATTTTTCACGAT
Unaligned ( gi|10 ): CAATTGCAATATACACTATAAATTCGCAGGATCTGCAAAAATATAGATACATGTATTATGCTGCCATTTATGCATGATTTTTTTACAACTTTAGTAAGTGCATTTATTTTTTTCAATTTTCGTAAGCACATTTTGATAATTGAAAAAGATTAAGGTAAATTCAATATCGTAGAAAGAATATCACGGCGACCGCAACTTTAACTTTCCCACGGCAGCGGTGATGATTTTGCTCAAGGCTCACTGTGTTCTATTTTTATCCAGTCAAAACCTTTCTGAAGAAGGCCTGCGCTTCACCCTTCAACATTTTTCACAAT
Unaligned ( gi|12 ): TAACTTTAGTGAGCACATTCTAATTTTATAAAAAAGAAGGAAAAACAGCAAATTCAAAAAACTTAGAAAGAATTGAACTGATAAATAAATGAAATAGACGCGTTGATTGACAAGTCTTCCATGGCGACAGCTTTCCCACACCAAGTGGTGATTTTG
Unaligned ( gi|13 ): GACCTTTAAAACGGAAACCTTCGATATCGCAACTATTACTTTCCCACGATTGCGTTAAAACTTGGCTCCGCCTACTGCGTTCTAATTGGGCGATATTCAGTCAAAACAATTCGCTGAAACCCACGGGCTTCGAACTTCAACATTTCTTACAA
Unaligned ( gi|14 ): TCATTTCAACGTCACTTTAGTAAGCACAATCTAGACTGATACAAATAAATGAAATCGACACGATGATTGACAAGTCTTTCACGGCGACCGCTTTTCCACGCCAAGTGATGATTTTGCTCCGCCTC
Unaligned ( gi|16 ): TAATTGGACAATAGCCAGTCGAACCAATTTGCGGAAACTTTTCTGCAGATAGCCCGTGCTTATAACGTCAACGTTTTCCACAA
Unaligned ( gi|17 ): TAAGTCAAAACAATTTGCAGAAACTTTTCTGCAGATTGCCCGTGCTTATAACTTCAACGTTTTCCACAAA
Unaligned ( gi|18 ): TATGTTCCACGGCGACCTCAACAAGTACTTTCCCACGAGCGCCTTGAAACATGGCTCCGCCTA
Unaligned ( gi|19 ): TTGGCTCTGCCTACTACGTACTTTCATATTGGACAACACTTGATAAAACCAATTCACTGAA
Unaligned ( gi|20 ): GACGATTCACTTGAATGGCACATTTGCGTAATTATTACTTTCAAACAATTAAACATTA
Unaligned ( gi|23 ): TTAGTAAGTAATAATGCATATCAAGCGTTTTGAAAGCTTAAAT
Alignments
lowQualScore : 1111 33 22 111 11 111 11 111111 111 11 111 6666666666666666666666666666666666666666666666666666 2222222222 11 7777777777777777777777777777777777777777777777777777 222222222222 2222222222222 1111 111 111 22222 1111111 11111 2222222 11 33333333 1111111 11 1111 222222 11111 1111 1111 111 111 22 11 1111111 111111 1 11111 11
lowQualScore : 0000 7 00 22 1 444 99 8 0 99 6 6 6 55 111 99 6 66 8 0 8888 11 8 777777 888888 6 6 222 88 111 6 6 6 6 3333333333333333333333333333333333333333333333333333 1 1 999999 2222222222 00 0 6666666666666666666666666666666666666666666666666666 1 99 6 6 6 222222222222 6 7 9999999999999 99 4444 6 111 6 111 6 6 99 99 33333 8888888 77 55 1 5 5 77 99999 1 5 6666666 99 8 00000000 8 8 8 8 8 8 8 9999999 8 8 8 8 0 8 11 8 7777 333333 8 8 77777 88 1 4444 8 99 5 2222 5 000 5 5 5 5 5 1 000 11 77 33 8888888 5 5 5 444444 2 4 11111 00 4 2 99 3
lowQualScore : .... . .. .. . ... .. . . .. . . . .. ... .. . .. . . .... .. . ...... ...... . . ... .. ... . . . . .................................................... . . ...... .......... .. . .................................................... . .. . . . ............ . . ............. .. .... . ... . ... . . .. .. ..... ....... .. .. . . . .. ..... . . ....... .. . ........ . . . . . . . ....... . . . . . . .. . .... ...... . . ..... .. . .... . .. . .... . ... . . . . . . ... .. .. .. ....... . . . ...... . . ..... .. . . .. .
lowQualScore : 7777 3 00 00 0 000 00 0 8 22 7 7 7 88 777 22 7 88 0 6 8888 00 0 888888 333333 7 7 888 33 777 7 7 7 7 8888888888888888888888888888888888888888888888888888 7 0 333333 8888888888 33 7 0000000000000000000000000000000000000000000000000000 0 22 7 7 7 888888888888 7 5 2222222222222 22 2222 7 777 7 777 7 7 22 22 33333 6666666 99 99 9 7 7 99 99999 7 7 0000000 00 0 00000000 0 0 0 0 0 0 0 8888888 0 0 0 0 8 0 00 0 0000 000000 0 0 88888 66 0 2222 0 22 7 1111 7 000 7 7 7 7 7 7 000 44 99 66 6666666 7 7 7 444444 2 4 11111 66 4 5 55 2
consensus : TAGAAAGGGAGTCTATTCAT--TCCCCAGATTG-TCATAAGGA---GTGTATTN-T-GGTTGTTTTGGT--GTTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGAGATGACAGAAATGAAAAAAAAAA-TGTGGC-AA-TA--GCC-CGCTAAGC-CT---TCANCTT-CA-TGCAA-AATTTCT--NTTC--AA---A-T-ATGC-TGAAA-TTA----------------A-C-CAAA------ATAA---TGA--------T---TCACAANTGCT--TGA-TA--AG------AATG-GTTGCGT---------C----------A-TAC-GT-TAC------TCA----------TCCT--A-G-AATAG-TTGCATCC--TA---CG---TTACAT-CAAANA-ACA---AA-CGTATAACA--TG----GTT-TTG---GT-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGGAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGCTTCTGGA-GCTT-------CAAAAG--AACAAAA-GTTATAT-NN-----AAA-GTTT-ACTGTTTTTT-GT-C-A-T-TG-CCA---CA-GAT-AAG-TG-CAGAGT-GTTT--GGGGAAACGG-T----GCA------TCT-TTCG-A--TAGT-TATTTGTAGCATCAAAAGATGC----TTAT-GGCA--TTCC-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGCTATAAA--ATCAAA--TA--CACGTT-------CCTCTGGTTTCTCCCAAC-GTT-AAATCCCCAT-AAG------GAATAGTTGGAT-CCG-----ACGTG--AC-GGAATAGTTGGATCA-GAGTAACGATGTGTCACGGT
Reference ( family-3391 ) : TAGAAAGGGAGTCTATTCATGGTCCCCAGATTGATCANAAAGA---GTGTATTN-T-GGTTGTTTTGGT--GTTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGAGATGACAGAAATGAAAAAAAAAA-TGTGGC-AA-TA--GCC-CGCTAAGC-CT---TCAGCTT-CA-TGCAA-AATTTCT--ATTC--AA---A-T-ATGC-TGAAA-TTA----------------A-C-CAAA------ATAA---TGA--------T---TCACAANTACT--TGA-TA--AG------AATG-GTTGCGT---------C----------A-TAC-GT-TAC------TCA----------TCNT--A-G-AATAG-TTGCATCC--TA---CG---TTACAT-CAAANA-ACA---AA-CGTATAACA--TG----ATT-TTG---GT-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGGAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGCTTCTGGA-GCTT-------CAAAAG--AACAAAA-GTTATAT-NN-----AAA-GTTT-ACTGTTTTTT-GT-C-A-T-TG-CCG---CA-GAT-AAG-TG-CAGAGT-GTTT--GGGGAAACGG-T----GCA------TCT-TTTG-A--TAGT-TATTTGTAGNATCAAAAGATGC----TTAT-GGCA--TTCC-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGCTATAAA--ATCAAA--TA--CACGTT-------CCTCTGGTTTCTCCCAAC-GTT-AAATCCCCAT-AAG------GAATAGTTCGAT-CCG-----ACGTG--AC-GGAATAGTTGGATCA-GAGTAACGATGTGTCACGGT
gi|1 : TAGAAAGGGAGTCTAT-CATGGTCCCCAGATTGATCAGAAAAATACGTGTAATA-TTGGTTGTTT--GT--GTTTTA-TGAT-AAATGAGAGATGTACAAACTATTGATATGACAAAAAAGAAACAAGTGG-TGGGAC-AAATAAAGCCACGCTAAGC-CTCATTCTTCTTACA-TGCAA-AATTT----ATTC--AATAAA-TTATGCATGAAAATTA----------------AAC-CAAA------A--A---TGAAGAGCGATT---TTACAAATGCT--TGA-TA--AAGGGTGCATTG-GCTGTGT---------C----------AATAC-GTCTACATTCTTTCACT--------TCCTTTATG-ATTAG-CTGCATCC--TA---CGCTTTTCCATGCCAATATACAGTGAA-CAATTAACACTTG----GTTATTGTGTGTTGGATCTTCATTTTCATTCAATTGTTTTTTGTCCAATTAGTAGAAGTTATCGTAACGTAAAACAAAGTACATATCTTTTAATATAGT--TTTA-TAAG-GC--CCAGATGCTTTCAAGATCAAAAGCGAACAAAAAGTTGTAT-ATTTCCAAAA-GTTTTACTGTTTTTC-GTGC-AATATG-CCGATACAAGATTAAGCTGACAGAGTTGTTTTGGGGGAAATGG-TTTGAGCACACCGCTCT-TTCG-A--TAGTATATTTGTAGCATCAAAAGATGCAATTTTAT-GGCACTTTCC-GACAGAGCGGCAAACGTATATCTTGG-CTTA-TTT-TGA-AACGTATGTTTTTATTTATAGAGGTATAAACCATCAAAATCAGCCACG-T-------CTTCTGGTTTCTTTCAACTGTTAAAATCCCCAT-AAGGACCGTGAAT--TTGGATCCCGAAATTACGTGAAAC-GGAATAGTTCGAT
gi|11 : ttggtaagaaatatgcattatcaagcgcttatgaaagcttagaattaacacaacattttatatagtggcattgaataatatgctgccagacagaccatgagaatagcaaaataccacacgtgagcggtcgggcttatagggggggcggggggggagataattcatgctatttccgatgaatatcctcaaaactctaatatctttatgcaatcgtatatgtccactataaatatatattagacatgtcatctgtgcctaataattgaaaaataacatgtgcatgattttgttttccaactagggtaaaggcggtcattttcattgtgatttcatccgtaacttaaaggtaaagcaatttctaaatgttctagaaaagagtgaaatgaaatagacacgttgattgacatatttggcgtcaatccactcggcgtccaggcttttcgtaacgcgatggaatttttgcatccgcaccctcccaacgttctcaattaggatacacgattagacaatactcccgagtctggaaaacaaaatttgcaagaacatttctgcagatttgcccggctattaactttcaaccgcattttcccagagatataagCA--TTTC-GACAGTGC----AACA-A---CTT-G-CTTT-TTTCTGAGAACCTATG-CTTT-T---TAGAGCTATAAA--ATCAAA--TA--TACATT-------CCTCTGGTTTCTCCCAAT-GTT-AAATCCCCAC-AAG------GAATAGTTCAAT-CCG-----ACGTGT-AC-GGAATAGTTGGATCATAAGTAAC-ATGTGTCACGGTtc
gi|15 : TTCTCCCAAT-GTT-AAATCCCCAT-AAG------GAATAGTTGGAT-CCG-----ACGTG--AC-GGAATAGTTGGATGA-GAGTAATGATGTGTTACGGT
gi|2 : ---GTGTATTCGT-GGTTGTGTTGGT--GTTT-AATGAT-AG-CGA---ATGTA--AAC-ATTGAGATGACAGAA-TGAAAAAAAAAAATGTGGCCGA-TA--GCC-CGCTAAGCACT---TCAGCTC-AA-TGCAAGAATTTCT--TTTC--AA---AAT-ATGC-TGAAA-TTAGCTAAAATAAATGATTA-C-CAAATGCTTGATAAGAATGG--------TGTGTCATCGTTACTCATCG-TA--GG------AATA-GTTGCAT---------CCTAGTGTGTTA-TACCGG-TAT------TAAAAAATAAATNTCGT--A-G-AATAG-TTGCATCC--TAGTGTG---TTATAT-TAAAAA-ATA---AA--GTATAACA--TG----ATT-TTG---GT-GAATT---ATTT-CATTCAAT-GTTTT--G--CA-----GGGAAGT-------AGATAA--CAAACTAT-TTTCTCT-AA-ATAGT--TTTAATAAGAG-TTCTGGA-GTTT-------CAAAAG--AACAAAA-GTTATATGAA-----AAA-GTTT-ACTTGTTTTT-GT-C-A-T-TG-CCA---CA-GAT-AAG-TG-CAAGGT-GTTA--GGGGAAACGG-T----GCA------TCT-TTTG-A--TA-T-GATTTGTAGAATCAAAAGATGC----TTAT-GGCA--TTCC-AATAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CATTAT---TAAAGCTATAAAATATCAAA--TA--TACATT-------CCTCTGGTTTTTCTTAAC-GTT-AAATCCCCAT-AAG------GAATAGTTCAAT-CCG-----ACGTG--AC-GGAATAGTTGGATCA----T-ACGATGTGTCACGGTga
gi|21 : cTTGGAT-CCG-----ACATG--AC-GGAATAGTTGGAT---GAGTAACGATGTGTTACg
gi|22 : ------GAATAGTTGGAT-CCG-----ACGTG--AC-G---------------GAGTAGCGATGTGTCACGGT
gi|24 : GTTTTGGT--GTTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGAa
gi|3 : TTTGTAGCATTAAAAGATGC----TTta
gi|3 : cacaACAAAGC---GTGTATTG-T-GG--GTTGTGATTGGTTT-A-TGATTA--GGA---ATGTA--AAC-ATTGAGATGACAGAAATGAAAAAAAAAA-TGTGGC-CG-TA--GCC-CGCTAAGC-CT---TCAGC---CA-TG-AA-AATTTCT--TTTCAGAA---A-T-ATGC-TGAAA-TGA----------------G-C-TAAA------ATAA---TGA--------T---AC-CAAATGCT--TGATTA--AG------AATGCGTTGTGT---------C----------A-TAC-GT-TAC------TCA----------TCGT--A-GAAATAGTTTGCATCTAGTG---GA---TTATAT-TAAA-A-ATA---AA--GTATAA-A--TGAAAAATT-TTG---GT-GAATT---ATTT-CATTCAAT-GTTTT--G--CAG----TGGAA-T-------AGATAA--CAAACAAT-TTTCTCT-AA-ATAGTTCTTTAATAGG---TTCT-GA-GTTT-------CAAAAGA-AACAAAA-GTTATAT-GA-----AAA-GTTT-ACTGTGTTTT-GT-CAA-T-TGCCCA---CA-GAT-AAG-TG-C--AAT-GTTT---GGGAAACGGTT----GCA------TCTATTTGAA--TA-T-GAATTATAGAATAAAAAGATGC----TTATAGGCA--TTCCAAATAGTGC-----ACG-A---CTT-GCCTTATTTT-TGAGAACATAA--CATTAT---T--AACT-TAAAT-ATC-AA--TAT-TACATT-------CCCATGGTTTTTCTT-AC-GTT-AAATCCCCATAAAG------GAATAGTT-AAT--CG-----ACGTG--ACGGGAATAGTTGGATCA----T-ACGATGTGTCActgacaaatacaaagcgtgtattgtgggttgtgattggtttatgattaggaatgtaaacattgagatgacagaaatgaaaaaaaaaatgtggccgtagcccgctaagccttcagccatgaaaatttcttttcagaaatatgctgaaatgagctaaaataatgataccaaatgcttgattaagaatgcgttgtgtcatacgttactcatcgtagaaatagtttgcatctagtggattatattaaaaataaagtataaatgaaaaattttggtgaattatttcattcaatgttttgcagtggaatagataacaaacaattttctctaaatagttctttaataggttctgagtttcaaaagaaacaaaagttatatgaaaagtttactgtgttttgtcaattgcccacagataagtgcaatgtttgggaaacggttgcatctatttgaatatgaattatagaataaaaagatgcttataggcattccaaatagtgcacgacttgccttatttttgagaacataacattattaacttaaatatcaatattacattcccatggtttttcttacgttaaatccccataaaggaatagttaatcgacgtgacgggaatagttggatcatacgatgtgtca
gi|4 : cacaaagcatcttttaatgctacaaactgacaaatTAGAAAGGG--TCTATTCAT--TCCCCAGATT--TCATAAGGA---GTGTATTT-T-GGTTGTTTTGGT--GCTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGATATGGCAAAAA--AAGAAAGAAA-TGTGGC-AA-TA--GCC-CGCTAAGC-CT---TCATCTT-CA-TGCAA-AATTTCT--ATTC--AA---A-T-ATGC-TGAAA-TTA----------------G-C-CAAA------ATAA---TGA--------T---TTACAAATGCT--TGA-TA--AG------AATG-GTTGTGT---------C----------A-TAT-GT-TAC------TCA----------TCCT--A-G-AATAG-CTGCATCC--TA---CG---TTACAT-CAAATA-ACA---AACCATATAACA--TG----GTT-TTG---GT-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGAAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGCTTCTAGA-GCTT-------CAAAA---AACAAAA-GTTATAT-CC-----AAA-GTTT-ACTGTTTTTT-GT-C-A-T-TG-CCA---CA-TAT-AAG-TG-CAGATT-GTTT--GGGGAAATGG-T----ACA------TCT-TTCG-ATTTATT-TATTTGTAGCATC-AAAGATGC----TTAT-GGCA--T--C-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGCTATAAA--ATCAAA--TA--CACGTT-------CCTCTGGTTTCTTCCAAT-GTT-AAATCCCCAT-AAG------GAATAGT--GAT-CCG-----ACGTG--AC-GGAATAGTTGG-TCA-GAGTAACGATGTGTCACGGT
gi|6 : TT-CAATACAA-CATCTCTGAAATG--AA---A-T-A-----GAAG-TTG----------------A-TGCAAA-------------TGA--------A---CTACAAGTA-----GA-TA--A--------AT---TTGTGTAACTAGGATC----------AGTA--GT-TAC--------A-----------CCT--A-G-AATAG-TTACATCC--TA---CG---TTACAT-CAAAAA-ACA---AA-CA-ATAACA--TG----ATT-TTG---GG-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGAAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGCT-CTGGA-GCTT-------CAAAAG--AACAAAA-GTTATAT-CC-----AAAAGTTT-ACTGTTTTTTTGT-C-A-T-TG-T--------------------AGAGT-GTTT--GGGAAAATGG-T----GCA------TCC-TTTG-A--T-GT-TATTTGTAGCATCAAAAGATGC----TTAT-GGCA--TTCC-GGCAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGTTATGAA--ATCAAA--TA--CACGTT-------CCTTTGG
gi|7 : GAAA---AGTCTATTCAT--TCTCCAAATTG-TCATATGGA---ATGCATTG-T-GGTTGTTTTGGA--ATAA-A-C-AT-A--TGA---ATGTA--AAC-ATTAAGTTGACAGAAATGAATAAAAAAT-T----T-AA-TA--GCC-CGCTAAGC------------T-CA-TGCGA-AATTCCT--CTTTAAAA---A-T-ATGA-TGAAA-TTA----------------A-C-CAAA------AAGT---TGC--------G---TCGCAATTACT--C-A-TCCTAG------AATA-GTTGCAT---------C----------C-TAC-GT-TTC------T--------------TT--A-G-AA-A--------------------------AT-CTAAGA--------------TAACA--TG----GTT-TTG---GC-GG-TA---ATTT-CATTTAAT-GTTTT--G--CA-----TGAAAGT-------GTGTTA--CAAAGTA-----CTTT-AA----------TAAGAAAA---TCTGGA-G
gi|8 : tttgctacatgtagtactttgatatattcgaagtaataaagtgacctctcatcttcacattatagcctgggcttaagtatT-------ACATAT--CAAAGTAT-TAGCTTA-AT-ATAGT--TTTAATAAGAGC-TCTGGA-GCTaa
gi|8 : CC-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGATCATAAG-CTTTTT---TAGAGCTATAAA--ATCAAA--TA--CACGTTAATAATTCCTCCGATTTCTCCCAAT-GTT-AAATCTCCAT-AAG------GAATAGTTGGAT-CCG-----ACGTG--AC-GGAATAGTTGGATCA-GAGTAACGATGTGTCACGGTannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccgacagtgcaacgacttgcttattttgagatcataagcttttttagagctataaaatcaaatacacgttaataattcctccgatttctcccaatgttaaatctccataaggaatagttggatccgacgtgacggaatagttggatcagagtaacgatgtgtcacggtga
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TAGTAAGTAAAATGCATATCAAGCGTTATGAAAGCTTTAAATCCAGACTGAATACAAATACTCACGTGAGCGGGGGGAGGGGGGGGGAGGGGGCGGGGAGGAGGGAAGAGATAACAGCTTTTCCATCCATGAATTCCAAAAACTTTATCTTTATCCAATCGTAATGTCCAACTATAAAATAATATTTAGTAATCTGCTAAAATTAGATACTATGCATGATTTTGTTTTCCAACATAGGTAAGCGCATTTTCATTATTTCATCGTAATTTTAGTAAGCCAATTTCTAATTGTAGAAAGATAAATGAAATAGACACGTTGATTGACAAGTCTTCCACGGCGACCGCTTTCGTACGCTGATGATTTTGCTCCTCCTCCCAACGTTCTAAATTTGACAATAGGCCAGTCGAAAAAATTTGCAGAAACATTTCTGCAGATTGTTTGTGCTTATAACTTCAACGGTTTCCAAAAAA
Unaligned ( gi|9 ): CAATCGCAATATACACTATAAATTCACAGGATTCGCAAAAATATAGATATTATGCTGCTATTTACGCATGATTTTGTTTACAACTTTGGTAAGCGCATTTTTTTTTTCAACTTTAGAAAGTACATTTTGATAATTGGAAAAAGACTAAGGCAAATTCAATATCGTAGAAAGAATTTAAAATGAAATAGACACATCTTCCACGGCGACCTCAACATTAGCTTTTCCACGACAGTGGTGATGATTTGGCTCCGCCTACTATATGTTCTACTTGTCAGTCCAAACAATTCGCTGAAAACCTGCGCTTCAAACTTTAACATTTTTCACGAT
Unaligned ( gi|10 ): CAATTGCAATATACACTATAAATTCGCAGGATCTGCAAAAATATAGATACATGTATTATGCTGCCATTTATGCATGATTTTTTTACAACTTTAGTAAGTGCATTTATTTTTTTCAATTTTCGTAAGCACATTTTGATAATTGAAAAAGATTAAGGTAAATTCAATATCGTAGAAAGAATATCACGGCGACCGCAACTTTAACTTTCCCACGGCAGCGGTGATGATTTTGCTCAAGGCTCACTGTGTTCTATTTTTATCCAGTCAAAACCTTTCTGAAGAAGGCCTGCGCTTCACCCTTCAACATTTTTCACAAT
Unaligned ( gi|12 ): TAACTTTAGTGAGCACATTCTAATTTTATAAAAAAGAAGGAAAAACAGCAAATTCAAAAAACTTAGAAAGAATTGAACTGATAAATAAATGAAATAGACGCGTTGATTGACAAGTCTTCCATGGCGACAGCTTTCCCACACCAAGTGGTGATTTTG
Unaligned ( gi|13 ): GACCTTTAAAACGGAAACCTTCGATATCGCAACTATTACTTTCCCACGATTGCGTTAAAACTTGGCTCCGCCTACTGCGTTCTAATTGGGCGATATTCAGTCAAAACAATTCGCTGAAACCCACGGGCTTCGAACTTCAACATTTCTTACAA
Unaligned ( gi|14 ): TCATTTCAACGTCACTTTAGTAAGCACAATCTAGACTGATACAAATAAATGAAATCGACACGATGATTGACAAGTCTTTCACGGCGACCGCTTTTCCACGCCAAGTGATGATTTTGCTCCGCCTC
Unaligned ( gi|16 ): TAATTGGACAATAGCCAGTCGAACCAATTTGCGGAAACTTTTCTGCAGATAGCCCGTGCTTATAACGTCAACGTTTTCCACAA
Unaligned ( gi|17 ): TAAGTCAAAACAATTTGCAGAAACTTTTCTGCAGATTGCCCGTGCTTATAACTTCAACGTTTTCCACAAA
Unaligned ( gi|18 ): TATGTTCCACGGCGACCTCAACAAGTACTTTCCCACGAGCGCCTTGAAACATGGCTCCGCCTA
Unaligned ( gi|19 ): TTGGCTCTGCCTACTACGTACTTTCATATTGGACAACACTTGATAAAACCAATTCACTGAA
Unaligned ( gi|20 ): GACGATTCACTTGAATGGCACATTTGCGTAATTATTACTTTCAAACAATTAAACATTA
Unaligned ( gi|23 ): TTAGTAAGTAATAATGCATATCAAGCGTTTTGAAAGCTTAAAT
Alignments
lowQualScore : 1111 11 22 111 11 111 11 22222222222222 22 111 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11111111 111 3333 1111 111 111 22222 1111111 11111 2222222 11 33333333 111111 11 1111 222222 11111 1111 1111 111 111 22 11 1111111 111111 11111 11
lowQualScore : 0000 7 88 00 0 444 99 8 0 99 6 6 6 55 111 99 6 66 8 0 8888 11 8 00000000000000 8 1 22 444 8 8 8 8 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 99 6 6 6 99 22222222 6 7 6 6 111 1111 99 4444 6 111 6 111 6 6 99 99 33333 8888888 77 55 1 5 5 77 99999 1 5 6666666 99 8 00000000 8 8 8 8 8 8 8 555555 8 8 8 8 0 8 11 8 7777 333333 8 8 77777 88 4444 8 99 5 2222 5 000 5 5 5 5 5 1 000 11 77 33 8888888 5 5 5 444444 3 4 11111 00 4 2 99 3
lowQualScore : .... . .. .. . ... .. . . .. . . . .. ... .. . .. . . .... .. . .............. . . .. ... . . . . .................................................................................................................................... .. . . . .. ........ . . . . ... .... .. .... . ... . ... . . .. .. ..... ....... .. .. . . . .. ..... . . ....... .. . ........ . . . . . . . ...... . . . . . . .. . .... ...... . . ..... .. .... . .. . .... . ... . . . . . . ... .. .. .. ....... . . . ...... . . ..... .. . . .. .
lowQualScore : 7777 3 33 00 8 000 00 0 8 22 7 7 7 88 777 22 7 88 0 6 8888 00 0 88888888888888 0 0 00 000 0 0 0 0 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22 7 7 7 22 88888888 7 5 7 7 777 3333 22 2222 7 777 7 777 7 7 22 22 33333 6666666 99 99 9 7 7 99 99999 7 7 0000000 00 0 00000000 0 0 0 0 0 0 0 222222 0 0 0 0 8 0 00 0 0000 000000 0 0 88888 66 2222 0 22 7 1111 7 000 7 7 7 7 7 7 000 44 99 66 6666666 7 7 7 444444 9 4 11111 66 4 5 55 2
consensus : TAGAAAGGGAGTCTATTCAT--TCCCCAGATTG-TCATAAGGA---GTGTATTN-T-GGTTGTTTTGGT--GTTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGAGATGACAGAAATGAAAAAAAAAA-TGTGGC-AA-TA--GCC-CGCTAAGC-CT---TCANCTT-CATGCAA-AATTTCTNTTCA-AA---A-T-ATGC-TGAAA-TTA----------------A-CCAAA------ATAA---TGA--------T---TCACAAATGCT--TGA-TAAG------AATG-GTTGCGTC----------A-TAC-GT-TAC------TCA----------TCCT--A-G-AATAG-TTGCATCC--TA---CG---TTACAT-CAAAAA-A-CA---AA-CGTATAACA--TG----GTT-TTG---GT-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGGAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGCTTCTGGA-GCTT-------CAAAAG--AACAAAA-GTTATAT-NN-----AAA-GTTT-ACTGTTTTTT-GT-C-A-T-TG-CC---ACA-GAT-AAG-TG-CAGAGT-GTTT--GGGGAAACGG-T----GCA------TCT-TTCG-A--TAGT-TATTTGTAGCATCAAAAGATGC----TTAT-GGCA--TTCC-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGCTATAAA--ATCAAA--TA--CACGTT-------CCTCTGGTTTCTCCCAAC-GTT-AAATCCCCAT-AAG------GAATAGTTGGAT-CCG-----ACGTG--AC-GGAATAGTTGGATCA-GAGTAACGATGTGTCACGGT
Reference ( family-3391 ) : TAGAAAGGGAGTCTATTCAT--TCCCCAGATTG-TCATAAGGA---GTGTATTN-T-GGTTGTTTTGGT--GTTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGAGATGACAGAAATGAAAAAAAAAA-TGTGGC-AA-TA--GCC-CGCTAAGC-CT---TCANCTT-CATGCAA-AATTTCTNTTC--AA---A-T-ATGC-TGAAA-TTA----------------A-CCAAA------ATAA---TGA--------T---TCACAANTGCT--TGA-TAAG------AATG-GTTGCGTC----------A-TAC-GT-TAC------TCA----------TCCT--A-G-AATAG-TTGCATCC--TA---CG---TTACAT-CAAANA-A-CA---AA-CGTATAACA--TG----GTT-TTG---GT-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGGAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGCTTCTGGA-GCTT-------CAAAAG--AACAAAA-GTTATAT-NN-----AAA-GTTT-ACTGTTTTTT-GT-C-A-T-TG-CC---ACA-GAT-AAG-TG-CAGAGT-GTTT--GGGGAAACGG-T----GCA------TCT-TTCG-A--TAGT-TATTTGTAGCATCAAAAGATGC----TTAT-GGCA--TTCC-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGCTATAAA--ATCAAA--TA--CACGTT-------CCTCTGGTTTCTCCCAAC-GTT-AAATCCCCAT-AAG------GAATAGTTGGAT-CCG-----ACGTG--AC-GGAATAGTTGGATCA-GAGTAACGATGTGTCACGGT
gi|1 : TAGAAAGGGAGTCTAT-CATGGTCCCCAGATTGATCAGAAAAATACGTGTAATA-TTGGTTGTTT--GT--GTTTTA-TGAT-AAATGAGAGATGTACAAACTATTGATATGACAAAAAAGAAACAAGTGG-TGGGAC-AAATAAAGCCACGCTAAGC-CTCATTCTTCTTACATGCAA-AATTT--ATTC--AATAAA-TTATGCATGAAAATTA----------------AACCAAA------A--A---TGAAGAGCGATT---TTACAAATGCT--TGA-TAAAGGGTGCATTG-GCTGTGTC----------AATAC-GTCTACATTCTTTCACT--------TCCTTTATG-ATTAG-CTGCATCC--TA---CGCTTTTCCATGCCAATATA-CAGTGAA-CAATTAACACTTG----GTTATTGTGTGTTGGATCTTCATTTTCATTCAATTGTTTTTTGTCCAATTAGTAGAAGTTATCGTAACGTAAAACAAAGTACATATCTTTTAATATAGT--TTTA-TAAG-GC--CCAGATGCTTTCAAGATCAAAAGCGAACAAAAAGTTGTAT-ATTTCCAAAA-GTTTTACTGTTTTTC-GTGC-AATATG-CCGATACAAGATTAAGCTGACAGAGTTGTTTTGGGGGAAATGG-TTTGAGCACACCGCTCT-TTCG-A--TAGTATATTTGTAGCATCAAAAGATGCAATTTTAT-GGCACTTTCC-GACAGAGCGGCAAACGTATATCTTGG-CTTA-TTT-TGA-AACGTATGTTTTTATTTATAGAGGTATAAACCATCAAAATCAGCCACG-T-------CTTCTGGTTTCTTTCAACTGTTAAAATCCCCAT-AAGGACCGTGAAT--TTGGATCCCGAAATTACGTGAAAC-GGAATAGTTCGAT
gi|11 : ttggtaagaaatatgcattatcaagcgcttatgaaagcttagaattaacacaacattttatatagtggcattgaataatatgctgccagacagaccatgagaatagcaaaataccacacgtgagcggtcgggcttatagggggggcggggggggagataattcatgctatttccgatgaatatcctcaaaactctaatatctttatgcaatcgtatatgtccactataaatatatattagacatgtcatctgtgcctaataattgaaaaataacatgtgcatgattttgttttccaactagggtaaaggcggtcattttcattgtgatttcatccgtaacttaaaggtaaagcaatttctaaatgttctagaaaagagtgaaatgaaatagacacgttgattgacatatttggcgtcaatccactcggcgtccaggcttttcgtaacgcgatggaatttttgcatccgcaccctcccaacgttctcaattaggatacacgattagacaatactcccgagtctggaaaacaaaatttgcaagaacatttctgcagatttgcccggctattaactttcaaccgcattttcccagagatataagCA--TTTC-GACAGTGC----AACA-A---CTT-G-CTTT-TTTCTGAGAACCTATG-CTTT-T---TAGAGCTATAAA--ATCAAA--TA--TACATT-------CCTCTGGTTTCTCCCAAT-GTT-AAATCCCCAC-AAG------GAATAGTTCAAT-CCG-----ACGTGT-AC-GGAATAGTTGGATCATAAGTAAC-ATGTGTCACGGTtc
gi|15 : TTCTCCCAAT-GTT-AAATCCCCAT-AAG------GAATAGTTGGAT-CCG-----ACGTG--AC-GGAATAGTTGGATGA-GAGTAATGATGTGTTACGGT
gi|2 : ---GTGTATTCGT-GGTTGTGTTGGT--GTTT-AATGAT-AG-CGA---ATGTA--AAC-ATTGAGATGACAGAA-TGAAAAAAAAAAATGTGGCCGA-TA--GCC-CGCTAAGCACT---TCAGCTC-AATGCAAGAATTTCTTTTC--AA---AAT-ATGC-TGAAA-TTAGCTAAAATAAATGATTA-CCAAATGCTTGATAAGAATGG--------TGTGTCATCGTTACTCATCG-TAGG------AATA-GTTGCATCCTAGTGTGTTA-TACCGG-TAT------TAAAAAATAAATNTCGT--A-G-AATAG-TTGCATCC--TAGTGTG---TTATAT-TAAAAA-A-TA---AA--GTATAACA--TG----ATT-TTG---GT-GAATT---ATTT-CATTCAAT-GTTTT--G--CA-----GGGAAGT-------AGATAA--CAAACTAT-TTTCTCT-AA-ATAGT--TTTAATAAGAG-TTCTGGA-GTTT-------CAAAAG--AACAAAA-GTTATATGAA-----AAA-GTTT-ACTTGTTTTT-GT-C-A-T-TG-CC---ACA-GAT-AAG-TG-CAAGGT-GTTA--GGGGAAACGG-T----GCA------TCT-TTTG-A--TA-T-GATTTGTAGAATCAAAAGATGC----TTAT-GGCA--TTCC-AATAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CATTAT---TAAAGCTATAAAATATCAAA--TA--TACATT-------CCTCTGGTTTTTCTTAAC-GTT-AAATCCCCAT-AAG------GAATAGTTCAAT-CCG-----ACGTG--AC-GGAATAGTTGGATCA----T-ACGATGTGTCACGGTga
gi|21 : cTTGGAT-CCG-----ACATG--AC-GGAATAGTTGGAT---GAGTAACGATGTGTTACg
gi|22 : ------GAATAGTTGGAT-CCG-----ACGTG--AC-G---------------GAGTAGCGATGTGTCACGGT
gi|24 : GTTTTGGT--GTTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGAa
gi|3 : TTTGTAGCATTAAAAGATGC----TTta
gi|3 : cacaACAAAGC---GTGTATTG-T-GG--GTTGTGATTGGTTT-A-TGATTA--GGA---ATGTA--AAC-ATTGAGATGACAGAAATGAAAAAAAAAA-TGTGGC-CG-TA--GCC-CGCTAAGC-CT---TCAGC---CATG-AA-AATTTCTTTTCAGAA---A-T-ATGC-TGAAA-TGA----------------G-CTAAA------ATAA---TGA--------T---AC-CAAATGCT--TGATTAAG------AATGCGTTGTGTC----------A-TAC-GT-TAC------TCA----------TCGT--A-GAAATAGTTTGCATCTAGTG---GA---TTATAT-TAAA-A-A-TA---AA--GTATAA-A--TGAAAAATT-TTG---GT-GAATT---ATTT-CATTCAAT-GTTTT--G--CAG----TGGAA-T-------AGATAA--CAAACAAT-TTTCTCT-AA-ATAGTTCTTTAATAGG---TTCT-GA-GTTT-------CAAAAGA-AACAAAA-GTTATAT-GA-----AAA-GTTT-ACTGTGTTTT-GT-CAA-T-TGCCC---ACA-GAT-AAG-TG-C--AAT-GTTT---GGGAAACGGTT----GCA------TCTATTTGAA--TA-T-GAATTATAGAATAAAAAGATGC----TTATAGGCA--TTCCAAATAGTGC-----ACG-A---CTT-GCCTTATTTT-TGAGAACATAA--CATTAT---T--AACT-TAAAT-ATC-AA--TAT-TACATT-------CCCATGGTTTTTCTT-AC-GTT-AAATCCCCATAAAG------GAATAGTT-AAT--CG-----ACGTG--ACGGGAATAGTTGGATCA----T-ACGATGTGTCActgacaaatacaaagcgtgtattgtgggttgtgattggtttatgattaggaatgtaaacattgagatgacagaaatgaaaaaaaaaatgtggccgtagcccgctaagccttcagccatgaaaatttcttttcagaaatatgctgaaatgagctaaaataatgataccaaatgcttgattaagaatgcgttgtgtcatacgttactcatcgtagaaatagtttgcatctagtggattatattaaaaataaagtataaatgaaaaattttggtgaattatttcattcaatgttttgcagtggaatagataacaaacaattttctctaaatagttctttaataggttctgagtttcaaaagaaacaaaagttatatgaaaagtttactgtgttttgtcaattgcccacagataagtgcaatgtttgggaaacggttgcatctatttgaatatgaattatagaataaaaagatgcttataggcattccaaatagtgcacgacttgccttatttttgagaacataacattattaacttaaatatcaatattacattcccatggtttttcttacgttaaatccccataaaggaatagttaatcgacgtgacgggaatagttggatcatacgatgtgtca
gi|4 : cacaaagcatcttttaatgctacaaactgacaaatTAGAAAGGG--TCTATTCAT--TCCCCAGATT--TCATAAGGA---GTGTATTT-T-GGTTGTTTTGGT--GCTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGATATGGCAAAAA--AAGAAAGAAA-TGTGGC-AA-TA--GCC-CGCTAAGC-CT---TCATCTT-CATGCAA-AATTTCTATTC--AA---A-T-ATGC-TGAAA-TTA----------------G-CCAAA------ATAA---TGA--------T---TTACAAATGCT--TGA-TAAG------AATG-GTTGTGTC----------A-TAT-GT-TAC------TCA----------TCCT--A-G-AATAG-CTGCATCC--TA---CG---TTACAT-CAAATA-A-CA---AACCATATAACA--TG----GTT-TTG---GT-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGAAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGCTTCTAGA-GCTT-------CAAAA---AACAAAA-GTTATAT-CC-----AAA-GTTT-ACTGTTTTTT-GT-C-A-T-TG-CC---ACA-TAT-AAG-TG-CAGATT-GTTT--GGGGAAATGG-T----ACA------TCT-TTCG-ATTTATT-TATTTGTAGCATC-AAAGATGC----TTAT-GGCA--T--C-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGCTATAAA--ATCAAA--TA--CACGTT-------CCTCTGGTTTCTTCCAAT-GTT-AAATCCCCAT-AAG------GAATAGT--GAT-CCG-----ACGTG--AC-GGAATAGTTGG-TCA-GAGTAACGATGTGTCACGGT
gi|6 : -GT-TAC--------A-----------CCT--A-G-AATAG-TTACATCC--TA---CG---TTACAT-CAAAAA-A-CA---AA-CA-ATAACA--TG----ATT-TTG---GG-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGAAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGCT-CTGGA-GCTT-------CAAAAG--AACAAAA-GTTATAT-CC-----AAAAGTTT-ACTGTTTTTTTGT-C-A-T-TG-T--------------------AGAGT-GTTT--GGGAAAATGG-T----GCA------TCC-TTTG-A--T-GT-TATTTGTAGCATCAAAAGATGC----TTAT-GGCA--TTCC-GGCAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGTTATGAA--ATCAAA--TA--CACGTT-------CCTTTGG
gi|7 : ttcaatacaacatctctgaaatgaaatagaagttgatgcaaatgaactacaagtagataaatttgtgtaactaggatcagtaGAAA---AGTCTATTCAT--TCTCCAAATTG-TCATATGGA---ATGCATTG-T-GGTTGTTTTGGA--ATAA-A-C-AT-A--TGA---ATGTA--AAC-ATTAAGTTGACAGAAATGAATAAAAAAT-T----T-AA-TA--GCC-CGCTAAGC------------T-CATGCGA-AATTCCTCTTTAAAA---A-T-ATGA-TGAAA-TTA----------------A-CCAAA------A-------------------------AGTTGC----------------------GTCGCA------------A-T------TAC------TCA----------TCCT--A-G-AATAG-TTGCATCC--TA---CG---TTTCTT-TAGAAA-ATCT---AA--G-ATAACA--TG----GTT-TTG---GC-GG-TA---ATTT-CATTTAAT-GTTTT--G--CA-----TGAAAGT-------GTGTTA--CAAAGTA-----CTTT-AA----------TAAGAAAA---TCTGGA-G
gi|8 : tttgctacatgtagtactttgatatattcgaagtaataaagtgacctctcatcttcacattatagcctgggcttaagtatT-------ACATAT--CAAAGTAT-TAGCTTA-AT-ATAGT--TTTAATAAGAGC-TCTGGA-GCTaa
gi|8 : CC-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGATCATAAG-CTTTTT---TAGAGCTATAAA--ATCAAA--TA--CACGTTAATAATTCCTCCGATTTCTCCCAAT-GTT-AAATCTCCAT-AAG------GAATAGTTGGAT-CCG-----ACGTG--AC-GGAATAGTTGGATCA-GAGTAACGATGTGTCACGGTannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccgacagtgcaacgacttgcttattttgagatcataagcttttttagagctataaaatcaaatacacgttaataattcctccgatttctcccaatgttaaatctccataaggaatagttggatccgacgtgacggaatagttggatcagagtaacgatgtgtcacggtga
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TAGTAAGTAAAATGCATATCAAGCGTTATGAAAGCTTTAAATCCAGACTGAATACAAATACTCACGTGAGCGGGGGGAGGGGGGGGGAGGGGGCGGGGAGGAGGGAAGAGATAACAGCTTTTCCATCCATGAATTCCAAAAACTTTATCTTTATCCAATCGTAATGTCCAACTATAAAATAATATTTAGTAATCTGCTAAAATTAGATACTATGCATGATTTTGTTTTCCAACATAGGTAAGCGCATTTTCATTATTTCATCGTAATTTTAGTAAGCCAATTTCTAATTGTAGAAAGATAAATGAAATAGACACGTTGATTGACAAGTCTTCCACGGCGACCGCTTTCGTACGCTGATGATTTTGCTCCTCCTCCCAACGTTCTAAATTTGACAATAGGCCAGTCGAAAAAATTTGCAGAAACATTTCTGCAGATTGTTTGTGCTTATAACTTCAACGGTTTCCAAAAAA
Unaligned ( gi|9 ): CAATCGCAATATACACTATAAATTCACAGGATTCGCAAAAATATAGATATTATGCTGCTATTTACGCATGATTTTGTTTACAACTTTGGTAAGCGCATTTTTTTTTTCAACTTTAGAAAGTACATTTTGATAATTGGAAAAAGACTAAGGCAAATTCAATATCGTAGAAAGAATTTAAAATGAAATAGACACATCTTCCACGGCGACCTCAACATTAGCTTTTCCACGACAGTGGTGATGATTTGGCTCCGCCTACTATATGTTCTACTTGTCAGTCCAAACAATTCGCTGAAAACCTGCGCTTCAAACTTTAACATTTTTCACGAT
Unaligned ( gi|10 ): CAATTGCAATATACACTATAAATTCGCAGGATCTGCAAAAATATAGATACATGTATTATGCTGCCATTTATGCATGATTTTTTTACAACTTTAGTAAGTGCATTTATTTTTTTCAATTTTCGTAAGCACATTTTGATAATTGAAAAAGATTAAGGTAAATTCAATATCGTAGAAAGAATATCACGGCGACCGCAACTTTAACTTTCCCACGGCAGCGGTGATGATTTTGCTCAAGGCTCACTGTGTTCTATTTTTATCCAGTCAAAACCTTTCTGAAGAAGGCCTGCGCTTCACCCTTCAACATTTTTCACAAT
Unaligned ( gi|12 ): TAACTTTAGTGAGCACATTCTAATTTTATAAAAAAGAAGGAAAAACAGCAAATTCAAAAAACTTAGAAAGAATTGAACTGATAAATAAATGAAATAGACGCGTTGATTGACAAGTCTTCCATGGCGACAGCTTTCCCACACCAAGTGGTGATTTTG
Unaligned ( gi|13 ): GACCTTTAAAACGGAAACCTTCGATATCGCAACTATTACTTTCCCACGATTGCGTTAAAACTTGGCTCCGCCTACTGCGTTCTAATTGGGCGATATTCAGTCAAAACAATTCGCTGAAACCCACGGGCTTCGAACTTCAACATTTCTTACAA
Unaligned ( gi|14 ): TCATTTCAACGTCACTTTAGTAAGCACAATCTAGACTGATACAAATAAATGAAATCGACACGATGATTGACAAGTCTTTCACGGCGACCGCTTTTCCACGCCAAGTGATGATTTTGCTCCGCCTC
Unaligned ( gi|16 ): TAATTGGACAATAGCCAGTCGAACCAATTTGCGGAAACTTTTCTGCAGATAGCCCGTGCTTATAACGTCAACGTTTTCCACAA
Unaligned ( gi|17 ): TAAGTCAAAACAATTTGCAGAAACTTTTCTGCAGATTGCCCGTGCTTATAACTTCAACGTTTTCCACAAA
Unaligned ( gi|18 ): TATGTTCCACGGCGACCTCAACAAGTACTTTCCCACGAGCGCCTTGAAACATGGCTCCGCCTA
Unaligned ( gi|19 ): TTGGCTCTGCCTACTACGTACTTTCATATTGGACAACACTTGATAAAACCAATTCACTGAA
Unaligned ( gi|20 ): GACGATTCACTTGAATGGCACATTTGCGTAATTATTACTTTCAAACAATTAAACATTA
Unaligned ( gi|23 ): TTAGTAAGTAATAATGCATATCAAGCGTTTTGAAAGCTTAAAT
Alignments
lowQualScore : 1111 11 22 111 11 111 11 22222222222222 11 1111 4444444444444444444444 11 66666666666666666666666666666666 333333333333 66666666666666666666 22222222 333333333 1111 111 111 22222 1111111 11111 2222222 11 33333333 111111 11 1111 222222 2222 1111 1111 111 111 22 11 1111111 111111 11111 11
lowQualScore : 0000 7 88 00 0 444 99 8 0 99 6 6 6 55 111 99 6 66 8 0 8888 11 8 00000000000000 8 1 8 8 11 0 8 8 8 8 7777 0000000000000000000000 55 11 22222222222222222222222222222222 8 888888888888 6 6 11111111111111111111 1 99 6 6 6 99 55555555 99 333333333 2 99 4444 6 111 6 111 6 6 99 99 33333 8888888 77 55 1 5 5 77 99999 1 5 6666666 99 8 00000000 8 8 8 8 8 8 8 555555 8 8 8 8 0 8 11 8 7777 333333 8 8 6666 88 4444 8 99 5 2222 5 000 5 5 5 5 5 1 000 11 77 33 8888888 5 5 5 444444 3 4 11111 00 4 2 99 3
lowQualScore : .... . .. .. . ... .. . . .. . . . .. ... .. . .. . . .... .. . .............. . . . . .. . . . . . .... ...................... .. .. ................................ . ............ . . .................... . .. . . . .. ........ .. ......... . .. .... . ... . ... . . .. .. ..... ....... .. .. . . . .. ..... . . ....... .. . ........ . . . . . . . ...... . . . . . . .. . .... ...... . . .... .. .... . .. . .... . ... . . . . . . ... .. .. .. ....... . . . ...... . . ..... .. . . .. .
lowQualScore : 7777 3 33 00 8 000 00 0 8 22 7 7 7 88 777 22 7 88 0 6 8888 00 0 88888888888888 0 0 0 0 00 8 0 0 0 0 0000 6666666666666666666666 22 00 00000000000000000000000000000000 0 888888888888 7 7 55555555555555555555 0 22 7 7 7 22 33333333 22 000000000 5 22 2222 7 777 7 777 7 7 22 22 33333 6666666 99 99 9 7 7 99 99999 7 7 0000000 00 0 00000000 0 0 0 0 0 0 0 222222 0 0 0 0 8 0 00 0 0000 000000 0 0 8888 66 2222 0 22 7 1111 7 000 7 7 7 7 7 7 000 44 99 66 6666666 7 7 7 444444 9 4 11111 66 4 5 55 2
consensus : TAGAAAGGGAGTCTATTCAT--TCCCCAGATTG-TCATAAGGA---GTGTATTN-T-GGTTGTTTTGGT--GTTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGAGATGACAGAAATGAAAAAAAAAA-TGTGGC-AA-TA--GCC-CGCTAAGC-CT---TCANCTT-CATGCAA-AATTTCTNTTC-A-A--AAT-ATGC-TGAAA-TTAG-CCA----AAAT--------AATGA--------TTCACAA--ATGCT-TG---------------A-TA--AG------AATG-GTTGCGTC----------A-TAC-GT-TAC------TCA----------TCCT--A-G-AATAG-TTGCATCC--TA---CG---TTACAT--CAAAAAACA---AAC-GTATAACA--TG----GTT-TTG---GT-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGGAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGCTTCTGGA-GCTT-------CAAAAG--AACAAAA-GTTATAT-NN-----AAA-GTTT-ACTGTTTTTT-GT-C-A-T-TG-CC---ACA-GAT-AAG-TG-CAGAGT-GTTT--GGGGAAACGG-T----GCA------TCT-TTCG-AT--AGT-TATTTGTAGCATCAAAAGATGC----TTAT-GGCA--TTCC-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGCTATAAA--ATCAAA--TA--CACGTT-------CCTCTGGTTTCTCCCAAC-GTT-AAATCCCCAT-AAG------GAATAGTTGGAT-CCG-----ACGTG--AC-GGAATAGTTGGATCA-GAGTAACGATGTGTCACGGT
Reference ( family-3391 ) : TAGAAAGGGAGTCTATTCAT--TCCCCAGATTG-TCATAAGGA---GTGTATTN-T-GGTTGTTTTGGT--GTTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGAGATGACAGAAATGAAAAAAAAAA-TGTGGC-AA-TA--GCC-CGCTAAGC-CT---TCANCTT-CATGCAA-AATTTCTNTTC-A-A--AAT-ATGC-TGAAA-TTAA-CCA----AAAT--------AATGA--------TTCACAA--ATGCT-TG---------------A-TA--AG------AATG-GTTGCGTC----------A-TAC-GT-TAC------TCA----------TCCT--A-G-AATAG-TTGCATCC--TA---CG---TTACAT--CAAAAAACA---AAC-GTATAACA--TG----GTT-TTG---GT-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGGAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGCTTCTGGA-GCTT-------CAAAAG--AACAAAA-GTTATAT-NN-----AAA-GTTT-ACTGTTTTTT-GT-C-A-T-TG-CC---ACA-GAT-AAG-TG-CAGAGT-GTTT--GGGGAAACGG-T----GCA------TCT-TTCG-AT--AGT-TATTTGTAGCATCAAAAGATGC----TTAT-GGCA--TTCC-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGCTATAAA--ATCAAA--TA--CACGTT-------CCTCTGGTTTCTCCCAAC-GTT-AAATCCCCAT-AAG------GAATAGTTGGAT-CCG-----ACGTG--AC-GGAATAGTTGGATCA-GAGTAACGATGTGTCACGGT
gi|1 : TAGAAAGGGAGTCTAT-CATGGTCCCCAGATTGATCAGAAAAATACGTGTAATA-TTGGTTGTTT--GT--GTTTTA-TGAT-AAATGAGAGATGTACAAACTATTGATATGACAAAAAAGAAACAAGTGG-TGGGAC-AAATAAAGCCACGCTAAGC-CTCATTCTTCTTACATGCAA-AATTT--ATTC-A-ATAAATTATGCATGAAAATTAAACCA----AAA----------ATGAAGAGCGATTTTACAA--ATGCT-TG---------------A-TA--AAGGGTGCATTG-GCTGTGTC----------AATAC-GTCTACATTCTTTCACT--------TCCTTTATG-ATTAG-CTGCATCC--TA---CGCTTTTCCATGCCAATATACAGTGAAC-AATTAACACTTG----GTTATTGTGTGTTGGATCTTCATTTTCATTCAATTGTTTTTTGTCCAATTAGTAGAAGTTATCGTAACGTAAAACAAAGTACATATCTTTTAATATAGT--TTTA-TAAG-GC--CCAGATGCTTTCAAGATCAAAAGCGAACAAAAAGTTGTAT-ATTTCCAAAA-GTTTTACTGTTTTTC-GTGC-AATATG-CCGATACAAGATTAAGCTGACAGAGTTGTTTTGGGGGAAATGG-TTTGAGCACACCGCTCT-TTCG-AT--AGTATATTTGTAGCATCAAAAGATGCAATTTTAT-GGCACTTTCC-GACAGAGCGGCAAACGTATATCTTGG-CTTA-TTT-TGA-AACGTATGTTTTTATTTATAGAGGTATAAACCATCAAAATCAGCCACG-T-------CTTCTGGTTTCTTTCAACTGTTAAAATCCCCAT-AAGGACCGTGAAT--TTGGATCCCGAAATTACGTGAAAC-GGAATAGTTCGAT
gi|11 : ttggtaagaaatatgcattatcaagcgcttatgaaagcttagaattaacacaacattttatatagtggcattgaataatatgctgccagacagaccatgagaatagcaaaataccacacgtgagcggtcgggcttatagggggggcggggggggagataattcatgctatttccgatgaatatcctcaaaactctaatatctttatgcaatcgtatatgtccactataaatatatattagacatgtcatctgtgcctaataattgaaaaataacatgtgcatgattttgttttccaactagggtaaaggcggtcattttcattgtgatttcatccgtaacttaaaggtaaagcaatttctaaatgttctagaaaagagtgaaatgaaatagacacgttgattgacatatttggcgtcaatccactcggcgtccaggcttttcgtaacgcgatggaatttttgcatccgcaccctcccaacgttctcaattaggatacacgattagacaatactcccgagtctggaaaacaaaatttgcaagaacatttctgcagatttgcccggctattaactttcaaccgcattttcccagagatataagCA--TTTC-GACAGTGC----AACA-A---CTT-G-CTTT-TTTCTGAGAACCTATG-CTTT-T---TAGAGCTATAAA--ATCAAA--TA--TACATT-------CCTCTGGTTTCTCCCAAT-GTT-AAATCCCCAC-AAG------GAATAGTTCAAT-CCG-----ACGTGT-AC-GGAATAGTTGGATCATAAGTAAC-ATGTGTCACGGTtc
gi|15 : TTCTCCCAAT-GTT-AAATCCCCAT-AAG------GAATAGTTGGAT-CCG-----ACGTG--AC-GGAATAGTTGGATGA-GAGTAATGATGTGTTACGGT
gi|2 : ---GTGTATTCGT-GGTTGTGTTGGT--GTTT-AATGAT-AG-CGA---ATGTA--AAC-ATTGAGATGACAGAA-TGAAAAAAAAAAATGTGGCCGA-TA--GCC-CGCTAAGCACT---TCAGCTC-AATGCAAGAATTTCTTTTC-A-A--AAT-ATGC-TGAAA-TTAG-CTAAAATAAATGATTACCAAATGC--------TTGATAAGAATGGTGTGTCATCGTTACTCATCG-TA--GG------AATA-GTTGCATCCTAGTGTGTTA-TACCGG-TAT------TAAAAAATAAATNTCGT--A-G-AATAG-TTGCATCC--TAGTGTG---TTATAT--TAAAAAATA---AA--GTATAACA--TG----ATT-TTG---GT-GAATT---ATTT-CATTCAAT-GTTTT--G--CA-----GGGAAGT-------AGATAA--CAAACTAT-TTTCTCT-AA-ATAGT--TTTAATAAGAG-TTCTGGA-GTTT-------CAAAAG--AACAAAA-GTTATATGAA-----AAA-GTTT-ACTTGTTTTT-GT-C-A-T-TG-CC---ACA-GAT-AAG-TG-CAAGGT-GTTA--GGGGAAACGG-T----GCA------TCT-TTTG-AT--A-T-GATTTGTAGAATCAAAAGATGC----TTAT-GGCA--TTCC-AATAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CATTAT---TAAAGCTATAAAATATCAAA--TA--TACATT-------CCTCTGGTTTTTCTTAAC-GTT-AAATCCCCAT-AAG------GAATAGTTCAAT-CCG-----ACGTG--AC-GGAATAGTTGGATCA----T-ACGATGTGTCACGGTga
gi|21 : cTTGGAT-CCG-----ACATG--AC-GGAATAGTTGGAT---GAGTAACGATGTGTTACg
gi|22 : ------GAATAGTTGGAT-CCG-----ACGTG--AC-G---------------GAGTAGCGATGTGTCACGGT
gi|24 : GTTTTGGT--GTTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGAa
gi|3 : TTTGTAGCATTAAAAGATGC----TTta
gi|3 : cacaACAAAGC---GTGTATTG-T-GG--GTTGTGATTGGTTT-A-TGATTA--GGA---ATGTA--AAC-ATTGAGATGACAGAAATGAAAAAAAAAA-TGTGGC-CG-TA--GCC-CGCTAAGC-CT---TCAGC---CATG-AA-AATTTCTTTTC-AGA--AAT-ATGC-TGAAA-TGAG-CTA----AAAT--------AATGA--------TAC-CAA--ATGCT-TG---------------ATTA--AG------AATGCGTTGTGTC----------A-TAC-GT-TAC------TCA----------TCGT--A-GAAATAGTTTGCATCTAGTG---GA---TTATAT--T-AAAAATA---AA--GTATAA-A--TGAAAAATT-TTG---GT-GAATT---ATTT-CATTCAAT-GTTTT--G--CAG----TGGAA-T-------AGATAA--CAAACAAT-TTTCTCT-AA-ATAGTTCTTTAATAGG---TTCT-GA-GTTT-------CAAAAGA-AACAAAA-GTTATAT-GA-----AAA-GTTT-ACTGTGTTTT-GT-CAA-T-TGCCC---ACA-GAT-AAG-TG-C--AAT-GTTT---GGGAAACGGTT----GCA------TCTATTTGAAT--A-T-GAATTATAGAATAAAAAGATGC----TTATAGGCA--TTCCAAATAGTGC-----ACG-A---CTT-GCCTTATTTT-TGAGAACATAA--CATTAT---T--AACT-TAAAT-ATC-AA--TAT-TACATT-------CCCATGGTTTTTCTT-AC-GTT-AAATCCCCATAAAG------GAATAGTT-AAT--CG-----ACGTG--ACGGGAATAGTTGGATCA----T-ACGATGTGTCActgacaaatacaaagcgtgtattgtgggttgtgattggtttatgattaggaatgtaaacattgagatgacagaaatgaaaaaaaaaatgtggccgtagcccgctaagccttcagccatgaaaatttcttttcagaaatatgctgaaatgagctaaaataatgataccaaatgcttgattaagaatgcgttgtgtcatacgttactcatcgtagaaatagtttgcatctagtggattatattaaaaataaagtataaatgaaaaattttggtgaattatttcattcaatgttttgcagtggaatagataacaaacaattttctctaaatagttctttaataggttctgagtttcaaaagaaacaaaagttatatgaaaagtttactgtgttttgtcaattgcccacagataagtgcaatgtttgggaaacggttgcatctatttgaatatgaattatagaataaaaagatgcttataggcattccaaatagtgcacgacttgccttatttttgagaacataacattattaacttaaatatcaatattacattcccatggtttttcttacgttaaatccccataaaggaatagttaatcgacgtgacgggaatagttggatcatacgatgtgtca
gi|4 : cacaaagcatcttttaatgctacaaactgacaaatTAGAAAGGG--TCTATTCAT--TCCCCAGATT--TCATAAGGA---GTGTATTT-T-GGTTGTTTTGGT--GCTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGATATGGCAAAAA--AAGAAAGAAA-TGTGGC-AA-TA--GCC-CGCTAAGC-CT---TCATCTT-CATGCAA-AATTTCTATTC-A-A--A-T-ATGC-TGAAA-TTAG-CCA----AAAT--------AATGA--------TTTACAA--ATGCT-TG---------------A-TA--AG------AATG-GTTGTGTC----------A-TAT-GT-TAC------TCA----------TCCT--A-G-AATAG-CTGCATCC--TA---CG---TTACAT--CAAATAACA---AACCATATAACA--TG----GTT-TTG---GT-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGAAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGCTTCTAGA-GCTT-------CAAAA---AACAAAA-GTTATAT-CC-----AAA-GTTT-ACTGTTTTTT-GT-C-A-T-TG-CC---ACA-TAT-AAG-TG-CAGATT-GTTT--GGGGAAATGG-T----ACA------TCT-TTCG-ATTTATT-TATTTGTAGCATCAAA-GATGC----TTAT-GGCA--T--C-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGCTATAAA--ATCAAA--TA--CACGTT-------CCTCTGGTTTCTTCCAAT-GTT-AAATCCCCAT-AAG------GAATAGT--GAT-CCG-----ACGTG--AC-GGAATAGTTGG-TCA-GAGTAACGATGTGTCACGGT
gi|6 : -GT-TAC--------A-----------CCT--A-G-AATAG-TTACATCC--TA---CG---TTACAT--CAAAAAACA---AAC-A-ATAACA--TG----ATT-TTG---GG-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGAAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGCT-CTGGA-GCTT-------CAAAAG--AACAAAA-GTTATAT-CC-----AAAAGTTT-ACTGTTTTTTTGT-C-A-T-TG-T--------------------AGAGT-GTTT--GGGAAAATGG-T----GCA------TCC-TTTG-AT---GT-TATTTGTAGCATCAAAAGATGC----TTAT-GGCA--TTCC-GGCAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGTTATGAA--ATCAAA--TA--CACGTT-------CCTTTGG
gi|7 : ttcaatacaacatctctgaaatgaaatagaagttgatgcaaatgaactacaagtagataaatttgtgtaactaggatcagtaGAAA---AGTCTATTCAT--TCTCCAAATTG-TCATATGGA---ATGCATTG-T-GGTTGTTTTGGA--ATAA-A-C-AT-A--TGA---ATGTA--AAC-ATTAAGTTGACAGAAATGAATAAAAAAT-T----T-AA-TA--GCC-CGCTAAGC------------T-CATGCGA-AATTCCTCTTTAA-A--AAT-ATGA-TGAAA-TTAA-CCA----AAAA--------GTTGC--------GTCGCAA--TTACT-C----------------A-TCCTAG------AATA-GTTGCATC----------C-TAC-GT-TTC------T--------------TT--A-G-AA-AA-T------C--TA-----------------AGATAACA-----------------TG----GTT-TTG---GC-GG-TA---ATTT-CATTTAAT-GTTTT--G--CA-----TGAAAGT-------GTGTTA--CAAAGTA-----CTTT-AA----------TAAGAAAA---TCTGGA-G
gi|8 : tttgctacatgtagtactttgatatattcgaagtaataaagtgacctctcatcttcacattatagcctgggcttaagtatT-------ACATAT--CAAAGTAT-TAGCTTA-AT-ATAGT--TTTAATAAGAGC-TCTGGA-GCTaa
gi|8 : CC-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGATCATAAG-CTTTTT---TAGAGCTATAAA--ATCAAA--TA--CACGTTAATAATTCCTCCGATTTCTCCCAAT-GTT-AAATCTCCAT-AAG------GAATAGTTGGAT-CCG-----ACGTG--AC-GGAATAGTTGGATCA-GAGTAACGATGTGTCACGGTannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccgacagtgcaacgacttgcttattttgagatcataagcttttttagagctataaaatcaaatacacgttaataattcctccgatttctcccaatgttaaatctccataaggaatagttggatccgacgtgacggaatagttggatcagagtaacgatgtgtcacggtga
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TAGTAAGTAAAATGCATATCAAGCGTTATGAAAGCTTTAAATCCAGACTGAATACAAATACTCACGTGAGCGGGGGGAGGGGGGGGGAGGGGGCGGGGAGGAGGGAAGAGATAACAGCTTTTCCATCCATGAATTCCAAAAACTTTATCTTTATCCAATCGTAATGTCCAACTATAAAATAATATTTAGTAATCTGCTAAAATTAGATACTATGCATGATTTTGTTTTCCAACATAGGTAAGCGCATTTTCATTATTTCATCGTAATTTTAGTAAGCCAATTTCTAATTGTAGAAAGATAAATGAAATAGACACGTTGATTGACAAGTCTTCCACGGCGACCGCTTTCGTACGCTGATGATTTTGCTCCTCCTCCCAACGTTCTAAATTTGACAATAGGCCAGTCGAAAAAATTTGCAGAAACATTTCTGCAGATTGTTTGTGCTTATAACTTCAACGGTTTCCAAAAAA
Unaligned ( gi|9 ): CAATCGCAATATACACTATAAATTCACAGGATTCGCAAAAATATAGATATTATGCTGCTATTTACGCATGATTTTGTTTACAACTTTGGTAAGCGCATTTTTTTTTTCAACTTTAGAAAGTACATTTTGATAATTGGAAAAAGACTAAGGCAAATTCAATATCGTAGAAAGAATTTAAAATGAAATAGACACATCTTCCACGGCGACCTCAACATTAGCTTTTCCACGACAGTGGTGATGATTTGGCTCCGCCTACTATATGTTCTACTTGTCAGTCCAAACAATTCGCTGAAAACCTGCGCTTCAAACTTTAACATTTTTCACGAT
Unaligned ( gi|10 ): CAATTGCAATATACACTATAAATTCGCAGGATCTGCAAAAATATAGATACATGTATTATGCTGCCATTTATGCATGATTTTTTTACAACTTTAGTAAGTGCATTTATTTTTTTCAATTTTCGTAAGCACATTTTGATAATTGAAAAAGATTAAGGTAAATTCAATATCGTAGAAAGAATATCACGGCGACCGCAACTTTAACTTTCCCACGGCAGCGGTGATGATTTTGCTCAAGGCTCACTGTGTTCTATTTTTATCCAGTCAAAACCTTTCTGAAGAAGGCCTGCGCTTCACCCTTCAACATTTTTCACAAT
Unaligned ( gi|12 ): TAACTTTAGTGAGCACATTCTAATTTTATAAAAAAGAAGGAAAAACAGCAAATTCAAAAAACTTAGAAAGAATTGAACTGATAAATAAATGAAATAGACGCGTTGATTGACAAGTCTTCCATGGCGACAGCTTTCCCACACCAAGTGGTGATTTTG
Unaligned ( gi|13 ): GACCTTTAAAACGGAAACCTTCGATATCGCAACTATTACTTTCCCACGATTGCGTTAAAACTTGGCTCCGCCTACTGCGTTCTAATTGGGCGATATTCAGTCAAAACAATTCGCTGAAACCCACGGGCTTCGAACTTCAACATTTCTTACAA
Unaligned ( gi|14 ): TCATTTCAACGTCACTTTAGTAAGCACAATCTAGACTGATACAAATAAATGAAATCGACACGATGATTGACAAGTCTTTCACGGCGACCGCTTTTCCACGCCAAGTGATGATTTTGCTCCGCCTC
Unaligned ( gi|16 ): TAATTGGACAATAGCCAGTCGAACCAATTTGCGGAAACTTTTCTGCAGATAGCCCGTGCTTATAACGTCAACGTTTTCCACAA
Unaligned ( gi|17 ): TAAGTCAAAACAATTTGCAGAAACTTTTCTGCAGATTGCCCGTGCTTATAACTTCAACGTTTTCCACAAA
Unaligned ( gi|18 ): TATGTTCCACGGCGACCTCAACAAGTACTTTCCCACGAGCGCCTTGAAACATGGCTCCGCCTA
Unaligned ( gi|19 ): TTGGCTCTGCCTACTACGTACTTTCATATTGGACAACACTTGATAAAACCAATTCACTGAA
Unaligned ( gi|20 ): GACGATTCACTTGAATGGCACATTTGCGTAATTATTACTTTCAAACAATTAAACATTA
Unaligned ( gi|23 ): TTAGTAAGTAATAATGCATATCAAGCGTTTTGAAAGCTTAAAT
Alignments
lowQualScore : 1111 11 22 111 11 111 11 22222222222222 11 1111 4444444444444444444444 11 66666666666666666666666666666666 333333333333 66666666666666666666 22222222 333333333 1111 111 111 22222 1111111 11111 2222222 11 33333333 111111 11 1111 222222 2222 1111 1111 111 111 22 11 1111111 111111 11111 11
lowQualScore : 0000 7 88 00 0 444 99 8 0 99 6 6 6 55 111 99 6 66 8 0 8888 11 8 00000000000000 8 1 8 8 11 0 8 8 8 8 7777 0000000000000000000000 55 11 22222222222222222222222222222222 8 888888888888 6 6 11111111111111111111 1 99 6 6 6 99 55555555 99 333333333 2 99 4444 6 111 6 111 6 6 99 99 33333 8888888 77 55 1 5 5 77 99999 1 5 6666666 99 8 00000000 8 8 8 8 8 8 8 555555 8 8 8 8 0 8 11 8 7777 333333 8 8 6666 88 4444 8 99 5 2222 5 000 5 5 5 5 5 1 000 11 77 33 8888888 5 5 5 444444 3 4 11111 00 4 2 99 3
lowQualScore : .... . .. .. . ... .. . . .. . . . .. ... .. . .. . . .... .. . .............. . . . . .. . . . . . .... ...................... .. .. ................................ . ............ . . .................... . .. . . . .. ........ .. ......... . .. .... . ... . ... . . .. .. ..... ....... .. .. . . . .. ..... . . ....... .. . ........ . . . . . . . ...... . . . . . . .. . .... ...... . . .... .. .... . .. . .... . ... . . . . . . ... .. .. .. ....... . . . ...... . . ..... .. . . .. .
lowQualScore : 7777 3 33 00 8 000 00 0 8 22 7 7 7 88 777 22 7 88 0 6 8888 00 0 88888888888888 0 0 0 0 00 8 0 0 0 0 0000 6666666666666666666666 22 00 00000000000000000000000000000000 0 888888888888 7 7 55555555555555555555 0 22 7 7 7 22 33333333 22 000000000 5 22 2222 7 777 7 777 7 7 22 22 33333 6666666 99 99 9 7 7 99 99999 7 7 0000000 00 0 00000000 0 0 0 0 0 0 0 222222 0 0 0 0 8 0 00 0 0000 000000 0 0 8888 66 2222 0 22 7 1111 7 000 7 7 7 7 7 7 000 44 99 66 6666666 7 7 7 444444 9 4 11111 66 4 5 55 2
consensus : TAGAAAGGGAGTCTATTCAT--TCCCCAGATTG-TCATAAGGA---GTGTATTN-T-GGTTGTTTTGGT--GTTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGAGATGACAGAAATGAAAAAAAAAA-TGTGGC-AA-TA--GCC-CGCTAAGC-CT---TCANCTT-CATGCAA-AATTTCTNTTC-A-A--AAT-ATGC-TGAAA-TTAG-CCA----AAAT--------AATGA--------TTCACAA--ATGCT-TG---------------A-TA--AG------AATG-GTTGCGTC----------A-TAC-GT-TAC------TCA----------TCCT--A-G-AATAG-TTGCATCC--TA---CG---TTACAT--CAAAAAACA---AAC-GTATAACA--TG----GTT-TTG---GT-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGGAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGCTTCTGGA-GCTT-------CAAAAG--AACAAAA-GTTATAT-NN-----AAA-GTTT-ACTGTTTTTT-GT-C-A-T-TG-CC---ACA-GAT-AAG-TG-CAGAGT-GTTT--GGGGAAACGG-T----GCA------TCT-TTCG-AT--AGT-TATTTGTAGCATCAAAAGATGC----TTAT-GGCA--TTCC-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGCTATAAA--ATCAAA--TA--CACGTT-------CCTCTGGTTTCTCCCAAC-GTT-AAATCCCCAT-AAG------GAATAGTTGGAT-CCG-----ACGTG--AC-GGAATAGTTGGATCA-GAGTAACGATGTGTCACGGT
Reference ( family-3391 ) : TAGAAAGGGAGTCTATTCAT--TCCCCAGATTG-TCATAAGGA---GTGTATTN-T-GGTTGTTTTGGT--GTTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGAGATGACAGAAATGAAAAAAAAAA-TGTGGC-AA-TA--GCC-CGCTAAGC-CT---TCANCTT-CATGCAA-AATTTCTNTTC-A-A--AAT-ATGC-TGAAA-TTAG-CCA----AAAT--------AATGA--------TTCACAA--ATGCT-TG---------------A-TA--AG------AATG-GTTGCGTC----------A-TAC-GT-TAC------TCA----------TCCT--A-G-AATAG-TTGCATCC--TA---CG---TTACAT--CAAAAAACA---AAC-GTATAACA--TG----GTT-TTG---GT-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGGAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGCTTCTGGA-GCTT-------CAAAAG--AACAAAA-GTTATAT-NN-----AAA-GTTT-ACTGTTTTTT-GT-C-A-T-TG-CC---ACA-GAT-AAG-TG-CAGAGT-GTTT--GGGGAAACGG-T----GCA------TCT-TTCG-AT--AGT-TATTTGTAGCATCAAAAGATGC----TTAT-GGCA--TTCC-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGCTATAAA--ATCAAA--TA--CACGTT-------CCTCTGGTTTCTCCCAAC-GTT-AAATCCCCAT-AAG------GAATAGTTGGAT-CCG-----ACGTG--AC-GGAATAGTTGGATCA-GAGTAACGATGTGTCACGGT
gi|1 : TAGAAAGGGAGTCTAT-CATGGTCCCCAGATTGATCAGAAAAATACGTGTAATA-TTGGTTGTTT--GT--GTTTTA-TGAT-AAATGAGAGATGTACAAACTATTGATATGACAAAAAAGAAACAAGTGG-TGGGAC-AAATAAAGCCACGCTAAGC-CTCATTCTTCTTACATGCAA-AATTT--ATTC-A-ATAAATTATGCATGAAAATTAAACCA----AAA----------ATGAAGAGCGATTTTACAA--ATGCT-TG---------------A-TA--AAGGGTGCATTG-GCTGTGTC----------AATAC-GTCTACATTCTTTCACT--------TCCTTTATG-ATTAG-CTGCATCC--TA---CGCTTTTCCATGCCAATATACAGTGAAC-AATTAACACTTG----GTTATTGTGTGTTGGATCTTCATTTTCATTCAATTGTTTTTTGTCCAATTAGTAGAAGTTATCGTAACGTAAAACAAAGTACATATCTTTTAATATAGT--TTTA-TAAG-GC--CCAGATGCTTTCAAGATCAAAAGCGAACAAAAAGTTGTAT-ATTTCCAAAA-GTTTTACTGTTTTTC-GTGC-AATATG-CCGATACAAGATTAAGCTGACAGAGTTGTTTTGGGGGAAATGG-TTTGAGCACACCGCTCT-TTCG-AT--AGTATATTTGTAGCATCAAAAGATGCAATTTTAT-GGCACTTTCC-GACAGAGCGGCAAACGTATATCTTGG-CTTA-TTT-TGA-AACGTATGTTTTTATTTATAGAGGTATAAACCATCAAAATCAGCCACG-T-------CTTCTGGTTTCTTTCAACTGTTAAAATCCCCAT-AAGGACCGTGAAT--TTGGATCCCGAAATTACGTGAAAC-GGAATAGTTCGAT
gi|11 : ttggtaagaaatatgcattatcaagcgcttatgaaagcttagaattaacacaacattttatatagtggcattgaataatatgctgccagacagaccatgagaatagcaaaataccacacgtgagcggtcgggcttatagggggggcggggggggagataattcatgctatttccgatgaatatcctcaaaactctaatatctttatgcaatcgtatatgtccactataaatatatattagacatgtcatctgtgcctaataattgaaaaataacatgtgcatgattttgttttccaactagggtaaaggcggtcattttcattgtgatttcatccgtaacttaaaggtaaagcaatttctaaatgttctagaaaagagtgaaatgaaatagacacgttgattgacatatttggcgtcaatccactcggcgtccaggcttttcgtaacgcgatggaatttttgcatccgcaccctcccaacgttctcaattaggatacacgattagacaatactcccgagtctggaaaacaaaatttgcaagaacatttctgcagatttgcccggctattaactttcaaccgcattttcccagagatataagCA--TTTC-GACAGTGC----AACA-A---CTT-G-CTTT-TTTCTGAGAACCTATG-CTTT-T---TAGAGCTATAAA--ATCAAA--TA--TACATT-------CCTCTGGTTTCTCCCAAT-GTT-AAATCCCCAC-AAG------GAATAGTTCAAT-CCG-----ACGTGT-AC-GGAATAGTTGGATCATAAGTAAC-ATGTGTCACGGTtc
gi|15 : TTCTCCCAAT-GTT-AAATCCCCAT-AAG------GAATAGTTGGAT-CCG-----ACGTG--AC-GGAATAGTTGGATGA-GAGTAATGATGTGTTACGGT
gi|2 : ---GTGTATTCGT-GGTTGTGTTGGT--GTTT-AATGAT-AG-CGA---ATGTA--AAC-ATTGAGATGACAGAA-TGAAAAAAAAAAATGTGGCCGA-TA--GCC-CGCTAAGCACT---TCAGCTC-AATGCAAGAATTTCTTTTC-A-A--AAT-ATGC-TGAAA-TTAG-CTAAAATAAATGATTACCAAATGC--------TTGATAAGAATGGTGTGTCATCGTTACTCATCG-TA--GG------AATA-GTTGCATCCTAGTGTGTTA-TACCGG-TAT------TAAAAAATAAATNTCGT--A-G-AATAG-TTGCATCC--TAGTGTG---TTATAT--TAAAAAATA---AA--GTATAACA--TG----ATT-TTG---GT-GAATT---ATTT-CATTCAAT-GTTTT--G--CA-----GGGAAGT-------AGATAA--CAAACTAT-TTTCTCT-AA-ATAGT--TTTAATAAGAG-TTCTGGA-GTTT-------CAAAAG--AACAAAA-GTTATATGAA-----AAA-GTTT-ACTTGTTTTT-GT-C-A-T-TG-CC---ACA-GAT-AAG-TG-CAAGGT-GTTA--GGGGAAACGG-T----GCA------TCT-TTTG-AT--A-T-GATTTGTAGAATCAAAAGATGC----TTAT-GGCA--TTCC-AATAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CATTAT---TAAAGCTATAAAATATCAAA--TA--TACATT-------CCTCTGGTTTTTCTTAAC-GTT-AAATCCCCAT-AAG------GAATAGTTCAAT-CCG-----ACGTG--AC-GGAATAGTTGGATCA----T-ACGATGTGTCACGGTga
gi|21 : cTTGGAT-CCG-----ACATG--AC-GGAATAGTTGGAT---GAGTAACGATGTGTTACg
gi|22 : ------GAATAGTTGGAT-CCG-----ACGTG--AC-G---------------GAGTAGCGATGTGTCACGGT
gi|24 : GTTTTGGT--GTTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGAa
gi|3 : TTTGTAGCATTAAAAGATGC----TTta
gi|3 : cacaACAAAGC---GTGTATTG-T-GG--GTTGTGATTGGTTT-A-TGATTA--GGA---ATGTA--AAC-ATTGAGATGACAGAAATGAAAAAAAAAA-TGTGGC-CG-TA--GCC-CGCTAAGC-CT---TCAGC---CATG-AA-AATTTCTTTTC-AGA--AAT-ATGC-TGAAA-TGAG-CTA----AAAT--------AATGA--------TAC-CAA--ATGCT-TG---------------ATTA--AG------AATGCGTTGTGTC----------A-TAC-GT-TAC------TCA----------TCGT--A-GAAATAGTTTGCATCTAGTG---GA---TTATAT--T-AAAAATA---AA--GTATAA-A--TGAAAAATT-TTG---GT-GAATT---ATTT-CATTCAAT-GTTTT--G--CAG----TGGAA-T-------AGATAA--CAAACAAT-TTTCTCT-AA-ATAGTTCTTTAATAGG---TTCT-GA-GTTT-------CAAAAGA-AACAAAA-GTTATAT-GA-----AAA-GTTT-ACTGTGTTTT-GT-CAA-T-TGCCC---ACA-GAT-AAG-TG-C--AAT-GTTT---GGGAAACGGTT----GCA------TCTATTTGAAT--A-T-GAATTATAGAATAAAAAGATGC----TTATAGGCA--TTCCAAATAGTGC-----ACG-A---CTT-GCCTTATTTT-TGAGAACATAA--CATTAT---T--AACT-TAAAT-ATC-AA--TAT-TACATT-------CCCATGGTTTTTCTT-AC-GTT-AAATCCCCATAAAG------GAATAGTT-AAT--CG-----ACGTG--ACGGGAATAGTTGGATCA----T-ACGATGTGTCActgacaaatacaaagcgtgtattgtgggttgtgattggtttatgattaggaatgtaaacattgagatgacagaaatgaaaaaaaaaatgtggccgtagcccgctaagccttcagccatgaaaatttcttttcagaaatatgctgaaatgagctaaaataatgataccaaatgcttgattaagaatgcgttgtgtcatacgttactcatcgtagaaatagtttgcatctagtggattatattaaaaataaagtataaatgaaaaattttggtgaattatttcattcaatgttttgcagtggaatagataacaaacaattttctctaaatagttctttaataggttctgagtttcaaaagaaacaaaagttatatgaaaagtttactgtgttttgtcaattgcccacagataagtgcaatgtttgggaaacggttgcatctatttgaatatgaattatagaataaaaagatgcttataggcattccaaatagtgcacgacttgccttatttttgagaacataacattattaacttaaatatcaatattacattcccatggtttttcttacgttaaatccccataaaggaatagttaatcgacgtgacgggaatagttggatcatacgatgtgtca
gi|4 : cacaaagcatcttttaatgctacaaactgacaaatTAGAAAGGG--TCTATTCAT--TCCCCAGATT--TCATAAGGA---GTGTATTT-T-GGTTGTTTTGGT--GCTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGATATGGCAAAAA--AAGAAAGAAA-TGTGGC-AA-TA--GCC-CGCTAAGC-CT---TCATCTT-CATGCAA-AATTTCTATTC-A-A--A-T-ATGC-TGAAA-TTAG-CCA----AAAT--------AATGA--------TTTACAA--ATGCT-TG---------------A-TA--AG------AATG-GTTGTGTC----------A-TAT-GT-TAC------TCA----------TCCT--A-G-AATAG-CTGCATCC--TA---CG---TTACAT--CAAATAACA---AACCATATAACA--TG----GTT-TTG---GT-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGAAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGCTTCTAGA-GCTT-------CAAAA---AACAAAA-GTTATAT-CC-----AAA-GTTT-ACTGTTTTTT-GT-C-A-T-TG-CC---ACA-TAT-AAG-TG-CAGATT-GTTT--GGGGAAATGG-T----ACA------TCT-TTCG-ATTTATT-TATTTGTAGCATCAAA-GATGC----TTAT-GGCA--T--C-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGCTATAAA--ATCAAA--TA--CACGTT-------CCTCTGGTTTCTTCCAAT-GTT-AAATCCCCAT-AAG------GAATAGT--GAT-CCG-----ACGTG--AC-GGAATAGTTGG-TCA-GAGTAACGATGTGTCACGGT
gi|6 : -GT-TAC--------A-----------CCT--A-G-AATAG-TTACATCC--TA---CG---TTACAT--CAAAAAACA---AAC-A-ATAACA--TG----ATT-TTG---GG-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGAAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGCT-CTGGA-GCTT-------CAAAAG--AACAAAA-GTTATAT-CC-----AAAAGTTT-ACTGTTTTTTTGT-C-A-T-TG-T--------------------AGAGT-GTTT--GGGAAAATGG-T----GCA------TCC-TTTG-AT---GT-TATTTGTAGCATCAAAAGATGC----TTAT-GGCA--TTCC-GGCAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGTTATGAA--ATCAAA--TA--CACGTT-------CCTTTGG
gi|7 : ttcaatacaacatctctgaaatgaaatagaagttgatgcaaatgaactacaagtagataaatttgtgtaactaggatcagtaGAAA---AGTCTATTCAT--TCTCCAAATTG-TCATATGGA---ATGCATTG-T-GGTTGTTTTGGA--ATAA-A-C-AT-A--TGA---ATGTA--AAC-ATTAAGTTGACAGAAATGAATAAAAAAT-T----T-AA-TA--GCC-CGCTAAGC------------T-CATGCGA-AATTCCTCTTTAA-A--AAT-ATGA-TGAAA-TTAA-CCA----AAAA--------GTTGC--------GTCGCAA--TTACT-C----------------A-TCCTAG------AATA-GTTGCATC----------C-TAC-GT-TTC------T--------------TT--A-G-AA-AA-T------C--TA-----------------AGATAACA-----------------TG----GTT-TTG---GC-GG-TA---ATTT-CATTTAAT-GTTTT--G--CA-----TGAAAGT-------GTGTTA--CAAAGTA-----CTTT-AA----------TAAGAAAA---TCTGGA-G
gi|8 : tttgctacatgtagtactttgatatattcgaagtaataaagtgacctctcatcttcacattatagcctgggcttaagtatT-------ACATAT--CAAAGTAT-TAGCTTA-AT-ATAGT--TTTAATAAGAGC-TCTGGA-GCTaa
gi|8 : CC-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGATCATAAG-CTTTTT---TAGAGCTATAAA--ATCAAA--TA--CACGTTAATAATTCCTCCGATTTCTCCCAAT-GTT-AAATCTCCAT-AAG------GAATAGTTGGAT-CCG-----ACGTG--AC-GGAATAGTTGGATCA-GAGTAACGATGTGTCACGGTannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccgacagtgcaacgacttgcttattttgagatcataagcttttttagagctataaaatcaaatacacgttaataattcctccgatttctcccaatgttaaatctccataaggaatagttggatccgacgtgacggaatagttggatcagagtaacgatgtgtcacggtga
blockSeqs : GGG T . G . CG . TG . A T G . . . AT A CGA . . ACTTCAGCTC G T A G . . . . . AAAT TGATTACCAAATGC GA GA GTGTCATCGTTACTCATCGTAGG C CTAGTGTGTTA C . TAAAAAATAAATNT G . . A T AG GTGTG . AACCAT C . AAAA . . . . . . . . G . . T T . . TC AGCTT G . . A . GAA A . T . A . . CCC . . . . . . T . . A A TTAT G . A . A . . . . C T C . A . AT . T AATAATT . . A . C . . T G G G A
blockSeqs : A T . . . G . . . . . . . . . AT . CG . . CTTCATCTT . T . . . . . . . . TAATGA TA . TGATTAAG . A . . TCAT G . . . . . GA . AAGT C . . . . . . . . . . . . . T T . . . AGTT A . . . . GA . . . . . . . CC . . . . . . . . . . . A G . . . . . . . . . . . . A . T . . . . . . . G . . . . C G A
blockSeqs : . T . . . . . . . . . T . AA . . CTTCAGC . A . . . . . . . . TAATGA CG . CATCCTAG . A . . TCAT C . . . . . CG . AAGT C . . . . . . . . . . . . . T A . . . AGCT G . . . . CC . . . . . . . CC . . . . . . . . . . . A T . . . . . . . . . . . . A . . . . . . . . . C . . . . C G A
blockSeqs : . G . . . . . . . . . A . AA . . T . C . . . . . . . . AGTTGC C . TGATAAG . C . . A C . . . . . CG . AACA . . . . . . . . . . . . . . T A . . . AGCT G . . . . CC . . . . . . . T . . . . . . . . . . . G T . . . . . . . . . . . . A . . . . . . . . . G . . . . C G A
blockSeqs : . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . T A . . . TT G . . . . . . . . . . . . T . . . . . . . . . G . . . . C G A
blockSeqs : . . . . . . . AT . . . . . . . . . . . . . . . . . . . . . G . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : *** ** *** ** AT AA** ** CTTCAGCC****** ** TAATGA**************** CGATCAAG************************ A*********** TAT***************** ** CG****** ** AAGT***** ** *** *** ** ** ***** ******* ** T* AGCT* ******* ** CC****** CC**** ** **** ****** A*** N* **** ** **** *** *** ** ** ** ****** ***** ** G*
originalCons : TAGAAAGGGAGTCTATTCAT--TCCCCAGATTG-TCATAAGGA---GTGTATTN-T-GGTTGTTTTGGT--GTTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGAGATGACAGAAATGAAAAAAAAAA-TGTGGC-AA-TA--GCC-CGCTAAGC-CT---TCANCTT-CATGCAA-AATTTCTNTTC-A-A--AAT-ATGC-TGAAA-TTAG-CCA----AAAT--------AATGA--------TTCACAA--ATGCT-TG---------------A-TA--AG------AATG-GTTGCGTC----------A-TAC-GT-TAC------TCA----------TCCT--A-G-AATAG-TTGCATCC--TA---CG---TTACAT--CAAAAAACA---AAC-GTATAACA--TG----GTT-TTG---GT-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGGAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGCTTCTGGA-GCTT-------CAAAAG--AACAAAA-GTTATAT-NN-----AAA-GTTT-ACTGTTTTTT-GT-C-A-T-TG-CC---ACA-GAT-AAG-TG-CAGAGT-GTTT--GGGGAAACGG-T----GCA------TCT-TTCG-AT--AGT-TATTTGTAGCATCAAAAGATGC----TTAT-GGCA--TTCC-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGCTATAAA--ATCAAA--TA--CACGTT-------CCTCTGGTTTCTCCCAAC-GTT-AAATCCCCAT-AAG------GAATAGTTGGAT-CCG-----ACGTG--AC-GGAATAGTTGGATCA-GAGTAACGATGTGTCACGGT
finalCons : TAGAAAGGGAGTCTATTCAT--TCCCCAGATTG-TCATAAGGA---GTGTATTN-T-GGTTGTTTTGGT--GTTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGAGATGACAGAAATGAAAAAAAAAA-TGTGGCAA--TA--GCC-CGCTAAGCCTTCAGCC------CATGCAA-AATTTCTNTTC-A-A--AAT-ATGC-TGAAA-TTAG-CCA----AAATAATGA----------------TTCACAA--ATGCTCGATCAAG------------------------AATG-GTTGCGTCA-----------TAC-GT-TACTAT-----------------CCT--A-G-AATAG-TTGCATCC--TACG------TTACAT--CAAAAAACAAAGT-----ATAACA--TG----GTT-TTG---GT-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGGAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGCT-CTGGA-GCTT-------CAAAAG--AACAAAA-GTTATATCC------AAA-GTTT-ACTGTTTTTT-GT-C-A-T-TGCC----ACA-GAT-AAG-TG-CAGAGT-GTTT--GGGGAAACGG-T----GCA------TCT-TTCG-ATA---TN-ATTTGTAGCATCAAAAGATGC----TTAT-GGCA--TTCC-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGCTATAAA--ATCAAA--TA--CACGTT-------CCTCTGGTTTCTCCCAAC-GTT-AAATCCCCAT-AAG------GAATAGTTGGAT-CCG-----ACGTG--AC-GGAATAGTTGGATCAG-AGTAACGATGTGTCACGGT
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TAGTAAGTAAAATGCATATCAAGCGTTATGAAAGCTTTAAATCCAGACTGAATACAAATACTCACGTGAGCGGGGGGAGGGGGGGGGAGGGGGCGGGGAGGAGGGAAGAGATAACAGCTTTTCCATCCATGAATTCCAAAAACTTTATCTTTATCCAATCGTAATGTCCAACTATAAAATAATATTTAGTAATCTGCTAAAATTAGATACTATGCATGATTTTGTTTTCCAACATAGGTAAGCGCATTTTCATTATTTCATCGTAATTTTAGTAAGCCAATTTCTAATTGTAGAAAGATAAATGAAATAGACACGTTGATTGACAAGTCTTCCACGGCGACCGCTTTCGTACGCTGATGATTTTGCTCCTCCTCCCAACGTTCTAAATTTGACAATAGGCCAGTCGAAAAAATTTGCAGAAACATTTCTGCAGATTGTTTGTGCTTATAACTTCAACGGTTTCCAAAAAA
Unaligned ( gi|9 ): CAATCGCAATATACACTATAAATTCACAGGATTCGCAAAAATATAGATATTATGCTGCTATTTACGCATGATTTTGTTTACAACTTTGGTAAGCGCATTTTTTTTTTCAACTTTAGAAAGTACATTTTGATAATTGGAAAAAGACTAAGGCAAATTCAATATCGTAGAAAGAATTTAAAATGAAATAGACACATCTTCCACGGCGACCTCAACATTAGCTTTTCCACGACAGTGGTGATGATTTGGCTCCGCCTACTATATGTTCTACTTGTCAGTCCAAACAATTCGCTGAAAACCTGCGCTTCAAACTTTAACATTTTTCACGAT
Unaligned ( gi|10 ): CAATTGCAATATACACTATAAATTCGCAGGATCTGCAAAAATATAGATACATGTATTATGCTGCCATTTATGCATGATTTTTTTACAACTTTAGTAAGTGCATTTATTTTTTTCAATTTTCGTAAGCACATTTTGATAATTGAAAAAGATTAAGGTAAATTCAATATCGTAGAAAGAATATCACGGCGACCGCAACTTTAACTTTCCCACGGCAGCGGTGATGATTTTGCTCAAGGCTCACTGTGTTCTATTTTTATCCAGTCAAAACCTTTCTGAAGAAGGCCTGCGCTTCACCCTTCAACATTTTTCACAAT
Unaligned ( gi|12 ): TAACTTTAGTGAGCACATTCTAATTTTATAAAAAAGAAGGAAAAACAGCAAATTCAAAAAACTTAGAAAGAATTGAACTGATAAATAAATGAAATAGACGCGTTGATTGACAAGTCTTCCATGGCGACAGCTTTCCCACACCAAGTGGTGATTTTG
Unaligned ( gi|13 ): GACCTTTAAAACGGAAACCTTCGATATCGCAACTATTACTTTCCCACGATTGCGTTAAAACTTGGCTCCGCCTACTGCGTTCTAATTGGGCGATATTCAGTCAAAACAATTCGCTGAAACCCACGGGCTTCGAACTTCAACATTTCTTACAA
Unaligned ( gi|14 ): TCATTTCAACGTCACTTTAGTAAGCACAATCTAGACTGATACAAATAAATGAAATCGACACGATGATTGACAAGTCTTTCACGGCGACCGCTTTTCCACGCCAAGTGATGATTTTGCTCCGCCTC
Unaligned ( gi|16 ): TAATTGGACAATAGCCAGTCGAACCAATTTGCGGAAACTTTTCTGCAGATAGCCCGTGCTTATAACGTCAACGTTTTCCACAA
Unaligned ( gi|17 ): TAAGTCAAAACAATTTGCAGAAACTTTTCTGCAGATTGCCCGTGCTTATAACTTCAACGTTTTCCACAAA
Unaligned ( gi|18 ): TATGTTCCACGGCGACCTCAACAAGTACTTTCCCACGAGCGCCTTGAAACATGGCTCCGCCTA
Unaligned ( gi|19 ): TTGGCTCTGCCTACTACGTACTTTCATATTGGACAACACTTGATAAAACCAATTCACTGAA
Unaligned ( gi|20 ): GACGATTCACTTGAATGGCACATTTGCGTAATTATTACTTTCAAACAATTAAACATTA
Unaligned ( gi|23 ): TTAGTAAGTAATAATGCATATCAAGCGTTTTGAAAGCTTAAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 11 22 111 11 111 11 333333 11 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 11111111 1111111111 1111 111 111 22222 1111111 2222222 11 2222222 1111 111111111 11 1111 222222 11 1 1111 1111 111 111 22 11 1111111 111111 11111 11
lowQualScore : 0000 7 88 00 0 444 99 8 0 99 6 6 6 55 111 99 6 66 8 0 8888 11 8 0 8 5 111111 8 8 1 8 8 11 0 8 8 8 8 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 99 6 6 6 99 22222222 99 6 5555555555 99 4444 6 111 6 111 6 6 99 99 33333 8888888 77 55 1 5 5 77 0 5 6666666 99 8 5555555 2222 8 8 8 8 555555555 8 8 8 8 0 8 11 8 7777 333333 8 8 11 6 99 4444 8 99 5 2222 5 000 5 5 5 5 5 1 000 11 77 33 8888888 5 5 5 444444 3 4 11111 00 4 2 99 3
lowQualScore : .... . .. .. . ... .. . . .. . . . .. ... .. . .. . . .... .. . . . . ...... . . . . . .. . . . . . .................................................................................................................................. .. . . . .. ........ .. . .......... .. .... . ... . ... . . .. .. ..... ....... .. .. . . . .. . . ....... .. . ....... .... . . . . ......... . . . . . . .. . .... ...... . . .. . .. .... . .. . .... . ... . . . . . . ... .. .. .. ....... . . . ...... . . ..... .. . . .. .
lowQualScore : 7777 3 33 00 8 000 00 0 8 22 7 7 7 88 777 22 7 88 0 6 8888 00 0 8 0 6 000000 0 0 0 0 0 00 8 0 0 0 0 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22 7 7 7 22 88888888 22 7 0000000000 22 2222 7 777 7 777 7 7 22 22 33333 6666666 99 99 9 7 7 99 1 7 0000000 00 0 0000000 2222 0 0 0 0 888888888 0 0 0 0 8 0 00 0 0000 000000 0 0 00 0 00 2222 0 22 7 1111 7 000 7 7 7 7 7 7 000 44 99 66 6666666 7 7 7 444444 9 4 11111 66 4 5 55 2
consensus : TAGAAAGGGAGTCTATTCAT--TCCCCAGATTG-TCATAAGGA---GTGTATTN-T-GGTTGTTTTGGT--GTTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGAGATGACAGAAATGAAAAAAAAAA-TGTGGC-AA-TA--GCC-CGCTAAGC-CTTCAGCTT-----CA-TGCAA-AATTTCTNTTC-A-A--AAT-ATGC-TGAAA-TTAG-CCAAAAT------------AATGA--------TTTACAA--ATG--------------C-TCGATC--AAG-----AATG-GTTGCGTC----------A-TAC-GTT-----------ACT-A-----------TCCT--A-GAA-TAGTT-GCATCC--TA---CG---TTACAT--CAAAAAA-CAA--A--GTA--TAACA--TGG----TT-TTG---GT-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGGAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGC-TCTGGAGCTT-------CAAAAG--AACAAAA-GTTATAT----CC-AAA-G--TTTACTG-TTTTTTGT-C-A-T-TG-CC---ACA-GAT-AAG-TG-CAGAGT-GTTT--GGGGAAACGG-T----GCA------TCT-TTCG-A--TA-TN-ATTTGTAGCATCAAAAGATGC----TTAT-GGCA--TTCC-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGCTATAAA--ATCAAA--TA--CACGTT-------CCTCTGGTTTCTCCCAAC-GTT-AAATCCCCAT-AAG------GAATAGTTGGAT-CCG-----ACGTG--AC-GGAATAGTTGGATCA-GAGTAACGATGTGTCACGGT
Reference ( family-3391 ) : TAGAAAGGGAGTCTATTCAT--TCCCCAGATTG-TCATAAGGA---GTGTATTN-T-GGTTGTTTTGGT--GTTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGAGATGACAGAAATGAAAAAAAAAA-TGTGGC-AA-TA--GCC-CGCTAAGC-CTTCAGCC------CA-TGCAA-AATTTCTNTTC-A-A--AAT-ATGC-TGAAA-TTAG-CCAAAAT------------AATGA--------TTCACAA--ATG--------------C-TCGATC--AAG-----AATG-GTTGCGTC----------A-TAC-GTT-----------ACT-A-----------TCCT--A-GAA-TAGTT-GCATCC--TA---CG---TTACAT--CAAAAAA-CAA--A--GTA--TAACA--TGG----TT-TTG---GT-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGGAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGC-TCTGGAGCTT-------CAAAAG--AACAAAA-GTTATAT----CC-AAA-G--TTTACTG-TTTTTTGT-C-A-T-TG-CC---ACA-GAT-AAG-TG-CAGAGT-GTTT--GGGGAAACGG-T----GCA------TCT-TTCG-A--TA-TN-ATTTGTAGCATCAAAAGATGC----TTAT-GGCA--TTCC-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGCTATAAA--ATCAAA--TA--CACGTT-------CCTCTGGTTTCTCCCAAC-GTT-AAATCCCCAT-AAG------GAATAGTTGGAT-CCG-----ACGTG--AC-GGAATAGTTGGATCA-GAGTAACGATGTGTCACGGT
gi|1 : TAGAAAGGGAGTCTAT-CATGGTCCCCAGATTGATCAGAAAAATACGTGTAATA-TTGGTTGTTT--GT--GTTTTA-TGAT-AAATGAGAGATGTACAAACTATTGATATGACAAAAAAGAAACAAGTGG-TGGGAC-AAATAAAGCCACGCTAAGC-CT-CATTCTTCTTACA-TGCAA-AATTT--ATTC-A-ATAAATTATGCATGAAAATTAAACCAAAA--------------ATGAAGAGCGATTTTACAA--ATG--------------C-TTGATA--AAGGGTGCATTG-GCTGTGTC----------AATAC-GTCTACATTCTTTCACT-------------TCCTTTATGAT-TAGCT-GCATCC--TA---CGCTTTTCCATGCCAATATA-CAGTGA--ACAATTAACACTTGG----TTATTGTGTGTTGGATCTTCATTTTCATTCAATTGTTTTTTGTCCAATTAGTAGAAGTTATCGTAACGTAAAACAAAGTACATATCTTTTAATATAGT--TTTA-TAAG-GC-CCAGATGCTTTCAAGATCAAAAGCGAACAAAAAGTTGTATATTTCC-AAA-AGTTTTACTG-TTTTTCGTGC-AATATG-CCGATACAAGATTAAGCTGACAGAGTTGTTTTGGGGGAAATGG-TTTGAGCACACCGCTCT-TTCG-A--TAGTATATTTGTAGCATCAAAAGATGCAATTTTAT-GGCACTTTCC-GACAGAGCGGCAAACGTATATCTTGG-CTTA-TTT-TGA-AACGTATGTTTTTATTTATAGAGGTATAAACCATCAAAATCAGCCACG-T-------CTTCTGGTTTCTTTCAACTGTTAAAATCCCCAT-AAGGACCGTGAAT--TTGGATCCCGAAATTACGTGAAAC-GGAATAGTTCGAT
gi|11 : ttggtaagaaatatgcattatcaagcgcttatgaaagcttagaattaacacaacattttatatagtggcattgaataatatgctgccagacagaccatgagaatagcaaaataccacacgtgagcggtcgggcttatagggggggcggggggggagataattcatgctatttccgatgaatatcctcaaaactctaatatctttatgcaatcgtatatgtccactataaatatatattagacatgtcatctgtgcctaataattgaaaaataacatgtgcatgattttgttttccaactagggtaaaggcggtcattttcattgtgatttcatccgtaacttaaaggtaaagcaatttctaaatgttctagaaaagagtgaaatgaaatagacacgttgattgacatatttggcgtcaatccactcggcgtccaggcttttcgtaacgcgatggaatttttgcatccgcaccctcccaacgttctcaattaggatacacgattagacaatactcccgagtctggaaaacaaaatttgcaagaacatttctgcagatttgcccggctattaactttcaaccgcattttcccagagatataagCA--TTTC-GACAGTGC----AACA-A---CTT-G-CTTT-TTTCTGAGAACCTATG-CTTT-T---TAGAGCTATAAA--ATCAAA--TA--TACATT-------CCTCTGGTTTCTCCCAAT-GTT-AAATCCCCAC-AAG------GAATAGTTCAAT-CCG-----ACGTGT-AC-GGAATAGTTGGATCATAAGTAAC-ATGTGTCACGGTtc
gi|15 : TTCTCCCAAT-GTT-AAATCCCCAT-AAG------GAATAGTTGGAT-CCG-----ACGTG--AC-GGAATAGTTGGATGA-GAGTAATGATGTGTTACGGT
gi|2 : ---GTGTATTCGT-GGTTGTGTTGGT--GTTT-AATGAT-AG-CGA---ATGTA--AAC-ATTGAGATGACAGAA-TGAAAAAAAAAAATGTGGCCGA-TA--GCC-CGCTAAGCACTTCAGCT------CAATGCAAGAATTTCTTTTC-A-A--AAT-ATGC-TGAAA-TTAG-CTAAAATAAATGATTACCAAATGC--------TTGATAAGAATGGTGTGTCATCGTTAC-TC-ATCGTAGG-----AATA-GTTGCATCCTAGTGTGTTA-TACCGGT-----------ATT-AAAAAATAAATNTCGT--A-GAA-TAGTT-GCATCC--TAGTGTG---TTATAT--TAAAAAA-TAA--A--GTA--TAACA--TGA----TT-TTG---GT-GAATT---ATTT-CATTCAAT-GTTTT--G--CA-----GGGAAGT-------AGATAA--CAAACTAT-TTTCTCT-AA-ATAGT--TTTAATAAGAGT-TCTGGAGTTT-------CAAAAG--AACAAAA-GTTATAT----GA-AAAAG--TTTACTT-GTTTTTGT-C-A-T-TG-CC---ACA-GAT-AAG-TG-CAAGGT-GTTA--GGGGAAACGG-T----GCA------TCT-TTTG-A--TA-TG-ATTTGTAGAATCAAAAGATGC----TTAT-GGCA--TTCC-AATAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CATTAT---TAAAGCTATAAAATATCAAA--TA--TACATT-------CCTCTGGTTTTTCTTAAC-GTT-AAATCCCCAT-AAG------GAATAGTTCAAT-CCG-----ACGTG--AC-GGAATAGTTGGATCA----T-ACGATGTGTCACGGTga
gi|21 : cTTGGAT-CCG-----ACATG--AC-GGAATAGTTGGAT---GAGTAACGATGTGTTACg
gi|22 : ------GAATAGTTGGAT-CCG-----ACGTG--AC-G---------------GAGTAGCGATGTGTCACGGT
gi|24 : GTTTTGGT--GTTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGAa
gi|3 : TTTGTAGCATTAAAAGATGC----TTta
gi|3 : cacaACAAAGC---GTGTATTG-T-GG--GTTGTGATTGGTTT-A-TGATTA--GGA---ATGTA--AAC-ATTGAGATGACAGAAATGAAAAAAAAAA-TGTGGC-CG-TA--GCC-CGCTAAGC-CTTCAGCC-------A-TG-AA-AATTTCTTTTC-AGA--AAT-ATGC-TGAAA-TGAG-CTAAAAT------------AATGA--------TAC-CAA--ATG--------------C-TTGATT--AAG-----AATGCGTTGTGTC----------A-TAC-GTT-----------ACTCA-----------TCGT--A-GAAATAGTTTGCATCTAGTG---GA---TTATAT--TAAAAA--TAA--A--GTA--TAA-A--TGAAAAATT-TTG---GT-GAATT---ATTT-CATTCAAT-GTTTT--G--CAG----TGGAA-T-------AGATAA--CAAACAAT-TTTCTCT-AA-ATAGTTCTTTAATA--GGT-TCT-GAGTTT-------CAAAAGA-AACAAAA-GTTATAT----GA-AAA-G--TTTACTG-TGTTTTGT-CAA-T-TGCCC---ACA-GAT-AAG-TG-C--AAT-GTTT---GGGAAACGGTT----GCA------TCTATTTGAA--TA-TG-AATTATAGAATAAAAAGATGC----TTATAGGCA--TTCCAAATAGTGC-----ACG-A---CTT-GCCTTATTTT-TGAGAACATAA--CATTAT---T--AACT-TAAAT-ATC-AA--TAT-TACATT-------CCCATGGTTTTTCTT-AC-GTT-AAATCCCCATAAAG------GAATAGTT-AAT--CG-----ACGTG--ACGGGAATAGTTGGATCA----T-ACGATGTGTCActgacaaatacaaagcgtgtattgtgggttgtgattggtttatgattaggaatgtaaacattgagatgacagaaatgaaaaaaaaaatgtggccgtagcccgctaagccttcagccatgaaaatttcttttcagaaatatgctgaaatgagctaaaataatgataccaaatgcttgattaagaatgcgttgtgtcatacgttactcatcgtagaaatagtttgcatctagtggattatattaaaaataaagtataaatgaaaaattttggtgaattatttcattcaatgttttgcagtggaatagataacaaacaattttctctaaatagttctttaataggttctgagtttcaaaagaaacaaaagttatatgaaaagtttactgtgttttgtcaattgcccacagataagtgcaatgtttgggaaacggttgcatctatttgaatatgaattatagaataaaaagatgcttataggcattccaaatagtgcacgacttgccttatttttgagaacataacattattaacttaaatatcaatattacattcccatggtttttcttacgttaaatccccataaaggaatagttaatcgacgtgacgggaatagttggatcatacgatgtgtca
gi|4 : cacaaagcatcttttaatgctacaaactgacaaatTAGAAAGGG--TCTATTCAT--TCCCCAGATT--TCATAAGGA---GTGTATTT-T-GGTTGTTTTGGT--GCTT-A-TGAT-A--TGA---ATGTA--AAC-ATTGATATGGCAAAAA--AAGAAAGAAA-TGTGGC-AA-TA--GCC-CGCTAAGC-CTTCATCTT-----CA-TGCAA-AATTTCTATTC-A-A--A-T-ATGC-TGAAA-TTAG-CCAAAAT------------AATGA--------TTTACAA--ATG--------------C-TTGAT---AAG-----AATG-GTTGTGTC----------A-TAT-GTT-----------ACTCA-----------TCCT--A-GAA-TAGCT-GCATCC--TA---CG---TTACAT--CAAATAA-CAA--ACCATA--TAACA--TGG----TT-TTG---GT-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGAAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGCTTCTAGAGCTT-------CAAAA---AACAAAA-GTTATAT----CC-AAA-G--TTTACTG-TTTTTTGT-C-A-T-TG-CC---ACA-TAT-AAG-TG-CAGATT-GTTT--GGGGAAATGG-T----ACA------TCT-TTCG-ATTTATTT-ATTTGTAGCATC-AAAGATGC----TTAT-GGCA--T--C-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGCTATAAA--ATCAAA--TA--CACGTT-------CCTCTGGTTTCTTCCAAT-GTT-AAATCCCCAT-AAG------GAATAGT--GAT-CCG-----ACGTG--AC-GGAATAGTTGG-TCA-GAGTAACGATGTGTCACGGT
gi|6 : -GTT-----------AC--A------------CCT--A-GAA-TAGTT-ACATCC--TA---CG---TTACAT--CAAAAAA-CAA--A--CAA--TAACA--TGA----TT-TTG---GG-GGATC---ATTT-CATTCAAT-GTTTT--G--CA-----TGAAAGT-------ACGTAA--CAAAGTAT-TATCTTT-AA-ATAGT--TTTAATAAGAGC-TCTGGAGCTT-------CAAAAG--AACAAAA-GTTATAT----CCAAAA-G--TTTACTGTTTTTTTGT-C-A-T---------------------TG-TAGAGT-GTTT--GGGAAAATGG-T----GCA------TCC-TTTG-A--TG-TT-ATTTGTAGCATCAAAAGATGC----TTAT-GGCA--TTCC-GGCAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGAACATAAG-CTTTAT---TAGAGTTATGAA--ATCAAA--TA--CACGTT-------CCTTTGG
gi|7 : ttcaatacaacatctctgaaatgaaatagaagttgatgcaaatgaactacaagtagataaatttgtgtaactaggatcagtaGAAA---AGTCTATTCAT--TCTCCAAATTG-TCATATGGA---ATGCATTG-T-GGTTGTTTTGGA--ATAA-A-C-AT-A--TGA---ATGTA--AAC-ATTAAGTTGACAGAAATGAATAAAAAAT-T----T-AA-TA--GCC-CGCTA--------AGCT------CA-TGCGA-AATTCCTCTTTAA-A--AAT-ATGA-TGAAA-TTAA-CCAAAA-------------AGT--------------------TG--------------CGTCG--C--AA------------TTAC-TC----------A-T----------------------------------CCT--A-GAA-TAGTT-GCATCC--TA---CG---TTTCTT--TAGAAAATCTA--A--G-A--TAACA--TGG----TT-TTG---GC-GG-TA---ATTT-CATTTAAT-GTTTT--G--CA-----TGAAAGT-------GTGTTA--CAAAGTA-----CTTT-AA----------TAAGAAAA---TCTGGAG
gi|8 : tttgctacatgtagtactttgatatattcgaagtaataaagtgacctctcatcttcacattatagcctgggcttaagtatT-------ACATAT--CAAAGTAT-TAGCTTA-AT-ATAGT--TTTAATAAGAGC-TCTGGAGCTaa
gi|8 : CC-GACAGTGC----AACG-A---CTT-G-CTTA-TTT-TGAGATCATAAG-CTTTTT---TAGAGCTATAAA--ATCAAA--TA--CACGTTAATAATTCCTCCGATTTCTCCCAAT-GTT-AAATCTCCAT-AAG------GAATAGTTGGAT-CCG-----ACGTG--AC-GGAATAGTTGGATCA-GAGTAACGATGTGTCACGGTannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccgacagtgcaacgacttgcttattttgagatcataagcttttttagagctataaaatcaaatacacgttaataattcctccgatttctcccaatgttaaatctccataaggaatagttggatccgacgtgacggaatagttggatcagagtaacgatgtgtcacggtga
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TAGTAAGTAAAATGCATATCAAGCGTTATGAAAGCTTTAAATCCAGACTGAATACAAATACTCACGTGAGCGGGGGGAGGGGGGGGGAGGGGGCGGGGAGGAGGGAAGAGATAACAGCTTTTCCATCCATGAATTCCAAAAACTTTATCTTTATCCAATCGTAATGTCCAACTATAAAATAATATTTAGTAATCTGCTAAAATTAGATACTATGCATGATTTTGTTTTCCAACATAGGTAAGCGCATTTTCATTATTTCATCGTAATTTTAGTAAGCCAATTTCTAATTGTAGAAAGATAAATGAAATAGACACGTTGATTGACAAGTCTTCCACGGCGACCGCTTTCGTACGCTGATGATTTTGCTCCTCCTCCCAACGTTCTAAATTTGACAATAGGCCAGTCGAAAAAATTTGCAGAAACATTTCTGCAGATTGTTTGTGCTTATAACTTCAACGGTTTCCAAAAAA
Unaligned ( gi|9 ): CAATCGCAATATACACTATAAATTCACAGGATTCGCAAAAATATAGATATTATGCTGCTATTTACGCATGATTTTGTTTACAACTTTGGTAAGCGCATTTTTTTTTTCAACTTTAGAAAGTACATTTTGATAATTGGAAAAAGACTAAGGCAAATTCAATATCGTAGAAAGAATTTAAAATGAAATAGACACATCTTCCACGGCGACCTCAACATTAGCTTTTCCACGACAGTGGTGATGATTTGGCTCCGCCTACTATATGTTCTACTTGTCAGTCCAAACAATTCGCTGAAAACCTGCGCTTCAAACTTTAACATTTTTCACGAT
Unaligned ( gi|10 ): CAATTGCAATATACACTATAAATTCGCAGGATCTGCAAAAATATAGATACATGTATTATGCTGCCATTTATGCATGATTTTTTTACAACTTTAGTAAGTGCATTTATTTTTTTCAATTTTCGTAAGCACATTTTGATAATTGAAAAAGATTAAGGTAAATTCAATATCGTAGAAAGAATATCACGGCGACCGCAACTTTAACTTTCCCACGGCAGCGGTGATGATTTTGCTCAAGGCTCACTGTGTTCTATTTTTATCCAGTCAAAACCTTTCTGAAGAAGGCCTGCGCTTCACCCTTCAACATTTTTCACAAT
Unaligned ( gi|12 ): TAACTTTAGTGAGCACATTCTAATTTTATAAAAAAGAAGGAAAAACAGCAAATTCAAAAAACTTAGAAAGAATTGAACTGATAAATAAATGAAATAGACGCGTTGATTGACAAGTCTTCCATGGCGACAGCTTTCCCACACCAAGTGGTGATTTTG
Unaligned ( gi|13 ): GACCTTTAAAACGGAAACCTTCGATATCGCAACTATTACTTTCCCACGATTGCGTTAAAACTTGGCTCCGCCTACTGCGTTCTAATTGGGCGATATTCAGTCAAAACAATTCGCTGAAACCCACGGGCTTCGAACTTCAACATTTCTTACAA
Unaligned ( gi|14 ): TCATTTCAACGTCACTTTAGTAAGCACAATCTAGACTGATACAAATAAATGAAATCGACACGATGATTGACAAGTCTTTCACGGCGACCGCTTTTCCACGCCAAGTGATGATTTTGCTCCGCCTC
Unaligned ( gi|16 ): TAATTGGACAATAGCCAGTCGAACCAATTTGCGGAAACTTTTCTGCAGATAGCCCGTGCTTATAACGTCAACGTTTTCCACAA
Unaligned ( gi|17 ): TAAGTCAAAACAATTTGCAGAAACTTTTCTGCAGATTGCCCGTGCTTATAACTTCAACGTTTTCCACAAA
Unaligned ( gi|18 ): TATGTTCCACGGCGACCTCAACAAGTACTTTCCCACGAGCGCCTTGAAACATGGCTCCGCCTA
Unaligned ( gi|19 ): TTGGCTCTGCCTACTACGTACTTTCATATTGGACAACACTTGATAAAACCAATTCACTGAA
Unaligned ( gi|20 ): GACGATTCACTTGAATGGCACATTTGCGTAATTATTACTTTCAAACAATTAAACATTA
Unaligned ( gi|23 ): TTAGTAAGTAATAATGCATATCAAGCGTTTTGAAAGCTTAAAT