lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111
lowQualScore : 1 1 1 11 1 1 1 1 22222 11 3333333 1 11111111 11 22 1 4444 1 11 11 11 1 111 1 22 1 33333333333 11111 111 1111 222 1111 33333333 111111 2 2 111111 1 4 111 4 1 111111 11 11 33333333333333333 22222 4444 111 11 333333 111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 2222 2 4 4 4 222 4444444 55 11 1 1 222222 4 1 22 1 1 222 1 66666 22 333 1 33 2 2 11 444444 11 1 1 11 22222 44444444 333333 3333 222222 11111 444444444444444 444444444 3333333333 11 111 22 1 11 111 2222222222 1 3 222222222222222222222222222222222222222222222222222222222222222222222222222222 1 44444444444444444444444444444444 1 555555555 1111 44444444444 1 2222222222222222222222222222222222222222 2222222 1 3333333333333333 1 2 11 11 77777777777777777777777 11 11 11111 1111111 666666666666666666666666666 2 1 77777777777777777 1 4
lowQualScore : 2 2 4 666 7 555 6 33 7777 44 6 6 3 3 1 3 0 0 44 0 55555 0 22 3 88 666 3 99999 6666666 7 3 0 22222222 55 55 55 3 22 2 4 4 4 8888 8888 9 0 4 0 88 66 4 4 4 0 4 8 11 4 4 3 44 0 66 000 3 4 4 33 66 3 11111111111 66 5 22222 66 5 5 4 5 000 0000 5 66 66 9 222 66 66 66 1 0000 6 55555555 1 5 777777 777 1 5 5 77 5 0 666666 4 7 99 5 0 111 6 3 6 5 5 5 0 2 444444 5 9999 22 8 33 5 2 6 5 0 77777777777777777 22222 1111 888 777 5 99 555555 6 9 6 6 777777777777777777777777777777777777777777777777777777777777777777777777777777777777 22 6 2222 0 0 0 0 000 9999999 6 77 22 4 5 0 222222 2 0 5 77 5 0 666 7 6 3 4 4 66666 77 222 5 2 4 11 0 3 44 444444 88 1 3 3 6 33 55555 3 44444444 1 111111 4444 0 444444 77777 1 0 0 0 333333333333333 222222222 7777777777 33 777 2 00 0 66 555 1111111111 3 7 6 1 8 555 4 777777777777777777777777777777777777777777777777777777777777777777777777777777 3 8 0 11111111111111111111111111111111 1 3 0 000000000 0 5555 66666666666 4 3 7 3 4 3 4444444444444444444444444444444444444444 9999999 5 2222222222222222 44 0 1 0 33 22 4 8 99999999999999999999999 44 11 8 2 55 99999 1 8888888 5 6 2 444444444444444444444444444 6 1 6 8 22 6 4 7 3 0 4 5 4 44444444444444444 6 3 4 77 0 6
lowQualScore : . . . ... . ... . .. .... .. . . . . . . . . .. . ..... . .. . .. ... . ..... ....... . . . ........ .. .. .. . .. . . . . .... .... . . . . .. .. . . . . . . .. . . . .. . .. ... . . . .. .. . ........... .. . ..... .. . . . . ... .... . .. .. . ... .. .. .. . .... . ........ . . ...... ... . . . .. . . ...... . . .. . . ... . . . . . . . . ...... . .... .. . .. . . . . . ................. ..... .... ... ... . .. ...... . . . . .................................................................................... .. . .... . . . . ... ....... . .. .. . . . ...... . . . .. . . ... . . . . . ..... .. ... . . . .. . . .. ...... .. . . . . .. ..... . ........ . ...... .... . ...... ..... . . . . ............... ......... .......... .. ... . .. . .. ... .......... . . . . . ... . .............................................................................. . . . ................................ . . . ......... . .... ........... . . . . . . ........................................ ....... . ................ .. . . . .. .. . . ....................... .. .. . . .. ..... . ....... . . . ........................... . . . . .. . . . . . . . . ................. . . . .. . .
lowQualScore : 1 0 0 222 1 888 7 88 4444 66 7 7 3 3 0 3 0 0 66 0 00000 4 33 6 00 444 6 11111 2222222 3 6 9 77777777 00 00 00 6 33 0 4 4 4 3333 5555 3 6 0 6 33 11 4 4 4 8 4 0 11 4 4 9 00 2 11 666 3 4 4 99 11 3 99999999999 99 0 55555 99 0 0 2 0 999 6666 0 99 99 1 999 99 99 99 4 6666 0 44444444 9 0 000000 555 5 0 7 99 7 7 000000 3 3 22 0 0 777 7 0 7 5 7 7 0 1 777777 7 4444 00 4 88 0 0 0 0 4 44444444444444444 11111 2222 888 999 7 33 000000 7 3 7 7 555555555555555555555555555555555555555555555555555555555555555555555555555555555555 00 5 0000 0 0 0 0 000 0000000 0 00 00 0 5 5 000000 5 0 5 55 5 5 555 3 7 3 0 0 00000 55 555 5 5 0 55 0 0 00 333333 33 0 3 3 7 88 00000 0 55555555 2 000000 5555 2 888888 88888 2 2 2 2 222222222222222 888888888 0000000000 88 555 5 22 0 55 111 6666666666 2 8 0 0 0 000 2 333333333333333333333333333333333333333333333333333333333333333333333333333333 3 3 7 00000000000000000000000000000000 0 3 7 333333333 7 0000 00000000000 0 3 7 7 7 7 7777777777777777777777777777777777777777 5555555 5 0000000000000000 55 5 2 0 88 22 0 8 88888888888888888888888 22 00 2 5 88 33333 8 7777777 2 7 2 333333333333333333333333333 7 0 7 0 22 4 4 2 2 0 0 0 7 77777777777777777 0 3 0 77 0 0
consensus : ATCTAA-ATAC-AAATG-T-ATTAA---TATGTAATA-AGTAT--ACTA---TA--T-TATAAAGTTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG-AA-----AAAAN-T----TTTGCAG-T-T-AA------T-AT--C--A--TAACGCAA-G--TT-CA-T-GTCCCCAAAGCAAAG-TATTTG--T----GTCTATAATAGA-TAAC--TC--TT-CTAA-AGC-AAACAATTTGT-CAAACANAACATGTCTT-GC-ATTAGAATA-CTTTTTTACA--A--ATAA-A-G-AAAAA-GT--GGT-AGGC--A--TC----TTCT--TG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG-TCGATAATGTTTTTTCT-A--NACAAGT----CA-TA--ATTTA--AGACACAATTAT--GCC--T--CAGCTT----TGTGTGA----A--TAATATNT-AA----CAGGC-GTTTTTCC-AAA-ATTGA-AATG--CTTTGG-----GAGCAGTGCTATTT--TTGACAATATTAGATAT---G-CNTCTT-CGAAAT-TGA-CTGATTGACG-AAGATTTTGTTACC----NCAT-TTGG--TAAAANCATTTCC--ATTTAC-AAATGGCA-TCCGGAATGAAAGA-T-T-TCTTG---AAATTTCG-G-G-TCTACAT---TT---GGTA--NTATATAATTTT-CTT--CGTTTC---G-AGTG-CTGTA-TT-GG--AAC--A-----TTT-----T-TCCTA-AATTGTCAAATATA--GTNC-ACCG--TAAA-TATATGTAGGTA-CTGAGTATCTATCATGCGTTCTCATACATTGTGATTTAATTTCGCTTTTCTTCTCCTATTCGTT-AAATGGTCCCAACT-GTTT-AAGAGTATAT-GATTTCTTTGATGCCANAATAGACAAACCNGTTACNAATTNTTGCAGCGTGTAGCTGAACTTTAGTTCTAATTTTTNCAATATCTGAAATTGNACA-TCCATCCCATACCACNGAAGCATANTCTCTACCACATTGGTCTTTAACAAANGNTACATACATTTTTGANAGTTTNTCTCTACACAGAGTAAACTTTGAGTTTTCTTAATCAATCCTAACTTTTTA-TA--GGCATGATTTACAA--TGTTA-TCAAC-GTACACAG--AC-----CATTTNAAA---N--T-CATCCGAAAAAGCGAG-ACCAAGATGCTTAA--TGCGA----TGAAACA-T-TTCTAATTGACAACCTTGAAAAAGCAGTTGAGGTATTT------GGTTATG-------TNCTGATTT------ACCAAAA--AAT---AAAACCTTGGTTTT-ATTT-GGATTAAATTGAAGTAAC---CA-GTC-TTCAGACCA-TTTTTCTAAT-ATTNCGA-GATCATGATT-AAGT---A---A-ATTCT---ATGTTGTTTA-A--ACTNCA---TTATCCG-CG-ATA-TCGAA-T-GA----AT--GTCAT-CAGCAAATAATCGA----CANANNGACAACA--TATCG--TCGGCGACGTCGTT-GATATA-----NA--TTAAAAACAAC-AATGGA-C-C-AGGACTGANCCT-TGNGGNACNCCANCATTA-A-TT-T-CA--AA--------C--TGTTG-----AT-GCAAATCTTTATACA-TAAC-TTTTGCTGTC-T-ATN-AT--ATA-NAATAGTTTTTAA-CCA--TTGAAANAGATTNC----CA-CG-C-ATNCCGTGCGTTTGTAATTTGA--AAACGAGACCCTCA--TGCCA----NACTCTGTCAAANGC-T-T-T-GANAG-ATCGC---A-----------------------A-AAAACC-ATACG-ACACGATTTNCCNTCATCGACGTTTTGAACGAT---NTT-------ATG-TATATTT-TAANAAGCTGGT-AACCGTAA
Reference ( gi|1 ) : ATATAA-ATAC-AAATG-T-ATCAA---TATGTAATA-AGTAT--ACTA---TA--T-TATAAA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG-AA-----AAAAAAT----TTTACAG-T-T-AA------T-AT--C--A--TAATGCAA-G--TT-CA-T-GTCCCCAAAGCAAAG-TATTC---T----ATCTAAAATAGA-TAAT--TC--TT-CTAA-AGC-AAACAATTTGT-CAAACATAATATGTCTT-GC-ATTAGAATA-TTTTTTTACA--A--GTAA-A-G-AAAA--GT--GGT-AGGC--A--TC----TTCT--TG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG-TCGATAATGTTTTTTCT-A--AACAAGT----CA-TA--ATTTA--ATACACAATATT--GCC--T--CAGCTT----TGTTTG-----A--TAATATTT-AA----CTGGC-GTTTTTCCAAAA-ATTGA-AATG--CGTTGG-----GAGCAGTGCTATTT--TTGAAAATATTA-ATAT---G-CTTCTT-CTAAAT-TGA-CTGATTGACGCAAGATTCTGTTACC----TCAT-TTGG--TAAAAGCATTTCC--ATTTAC-AGATGACA-TCTGGAATGAAAGA-T-T-TCTTA---AAAATTCG-G-T-TCTACA----TT---GGTA--TTATATAATTTT-CTT--CATTT----G-AGTG-CTGTA-TT-G---AAC--A-----TTT-----T-TCCTAAAATTG--AACTAT---TTAT-ACCA--TAAA-TAT---TGGGCA-CTG-GT---TATGATGCATTTT-AT-CAT-GTGATT-AATTTCGCTTTTCTTCTCCT-TTCGTTCAAAGGTTCCCAACCCGTTTCAAAAGTATAAAGATTCTTTTGATGCCAAAATAGACAAACCGGTTACCA-TTCTTGCAG-ATGTAGCTGAACTTT--TTCTAATTTTTCCAA-ATCTGAAATTGCACA-TCCATCCCATACCACAGAAGCATATTCTG-A--ATATTGGTCTT--ACAAACTGTATATACATTTTTGACAGTTTATCTCTACAAAGAGTAAA-TTTGAGCTTTCTTAATCAATCCTAACTTTTTA-TATAAGCATGATTTACAA--TATTA-TCAAT-GTACACAG--AC-----CATTTCAAA---A--T-CATCTGAAAAAATACA-ACCAAGATGCTTA---TGCGA----TGAAACA-T-TTCTAATTGACAACCTTGAAAAAGCAGTTGAGGTATTT------GGTTATG-------TGCTGATTT------ACCAAAA--AAT---AAAACCTTGG-TTT-ATTT-GGATTAAATTGAAGTAAC---CA-GTC-TTCAGATCA-TTTTTCTAAT-ATTTCTATGATCATGATT-AAGT---A--CACATTCT---ATGTTGTTTA-A--ATTTC----TTATCCG-CA-ATA-TTGAA-T-GA----ATTGGTCAT-CAGCATATAACCGA----CAAAAAGATAACA--TATTA--TGAGGAACATCATT-GACATA-----TA--TCAAAAACAAC-AATGGA-C-A-AGTAC-GAACCT-TGTGGCACTCCAGCATTA-A-TT-T-CA--AA--------C--TGTTG-----ATAACAAATCTTTATACA-TAACCTTTTGCTGTC-T-ATT-AT--ATA-GAATAGCTTTTAA-CCA--TTGAAAAAGATTTC----CACCG-C-ATTCCGTACGTTTGTAATTTGA--AAAGAAGACCCTCA--TGCCA----GACTCTGTCAAATGC-C-T-T-GACAG-ATCGC---A-----------------------A-AAAACC-ATACA-ACATGATTTTCCATCATC-ATATTTTTAACAAT---GCT-------ATGATATGTTT-TAATAAGTTGGTAAACTGTAATGA
gi|6 : ATTTAA-ATACCAAATGCT-ATTAG---TATGTAATGCAG-AT--ACTA---TA--TATATAAA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGATA-ATATAG-ATTT-GAACTG---CAG---------AAATTT----TTTACAGTT-T-AA------T-AT--C--ATTTAATGCAA-GTTTT-CA-TGGTCCCCACAACAAAGTTATTTTG-T----ATCTATAATAGA-TAAC--TCTTTT-CTAA-AGCAAAACAACTTGTCCAAACATAACATGTCTT-GCAATTAGAATA-TTTTTTACCA--A--GTAA-A-G-AAAA--GTTCGGT-CGGC--A--TCT---TTCT--TGTTTTTC-----CACCAATAAACAA--TAGGTGTGTTCGATAATGTTTTTTCTAA--AACAAGC----CATTA--ATTTA--ATACACATTTAT--GCC--TAACGTTTT----TGTTTGGTTGAA--TAATATTTAAA----CTGGC-G-TTTTCCAAAA-TTTGAGAATG--C-TTTG-----GAGCA-TGCTATTG--TTGACAATATTAGATATTACG-CTCTTT-CTAATT-TGAGCTGATTGACG-AAGATT-TGTTATC----TCAT-TTGGGTTAAAAGCA-TTCC--ATTTAC-AGATGACATTCTGGAATGAAAGA-----TCTTA---AAAATTCG-G---TCTACA----TTTTCAGTA--TTATATAATTTT-CTT--CATTTCGTCG-AGTGCCTGTAGTT-GA--AAC--A-----TTT-----T-TCCTATAATTG---ACTATA--GTATCACCA--TAAAGTAT---
gi|12 : taATTTAA-ATAC-AAATG-T-ATAAA---TA-GTAATA-AGTAT--ACTA---TA--T-TATAAA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-ATTT-GAACTG---CAG-AA-----AAAAAA------TTACAG-T-T-AA------TAAT--C--A--TAATGCAA-GTTTT-CA-T-GTCCCCAAAGCAAAG-TATTTG--T----ATCTATAATAGA-TAAC--TC--TT-CTAA-AGC-AAACATATTGT-CAAACA-AA-ATGTCTT-GC-ATTAGA------TTTTTACA--A--GTAA-A-G-AAAA--AA--GGT-AGGC--A--TC----TTCT--TG-TTTTC-----CA---ATAAACAATTTAGGTGTG-TCGATAATGTTTTTTCT-A--AACAAGT----CA-TA--ATTTA--ATACAC
gi|13 : ATCTAA-ATAC-AAATG-TCATTGAATATATGTAATA-AGTAT--ACTA---TA--T-TATAAA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGATTAATATAG-TTTTGGAACTG---CAG---------AAATAT----TTTACAGTT-T-AA------T-AT--C--A--TAATGCAACGT-TT-CATT-GTCCCCAAAGCAAAG-TATTTG--TATAGATCTATGATAGA-TAAC--TC--TT-CTAA-AGC-AAACAATTTAT-CAAACATAACATttt
gi|16 : ATATAA-ATAC-AAATG-T-ATTAA---TATGTAATA-AGTAT--ACTA---TA--T-TATAAA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAA-TTTT-GAACTG---CAG-AATTTTT------T----TTTACAG-T-T-AATACATGT-AT--C--A--TAATGCAA-GTTTT-CA-T-GTCCAC-AAGCAAAG-TATTTG--T----ATCTATAATAGA-TAAtgaattttatttaaggtctctacacataatacaaacaaat
gi|20 : ATCTAA-ATAC-AAATG-T-ATTAA---TATGTAATA-AGTAT--ACTA---TA--T-TATAAA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG-AA-----AAAAG-------TTACAG-T-T-AA------T-AT--C--A--TAATGCAA-G--TT-
gi|18 : aATCTAA-ATAC-AAATG-T-ATTGA---TATATAATA-AGTAT--ACTAAATTA--TATATAAA-TTG-ATAAATT-A-TTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG-AA-----AAAAAA-----TTGGCAG-T-T-AA------T-AT--C--A--TAACGCAA-G--Tt
gi|23 : taATCTAA-ATAC-AAATG-T-ATTAA---TATGTAATA-AGTAT--ACTA---TA--T-CATAAA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGagattggtaatcccagcagcacacattttg
gi|5 : taTAATATAC-AAATA-G-AG-AA---TATATGATA-AGTGCGCACTG---AA--T-TTTAAAGTTG-ATAAATC-AAGTA-AAATCGTA--TTTTGACATTACATATAT--ATATAG-TTT--GAACTG---CAG-AA-----AAAAT-T----TTTGCAG-T-TTAA------C-AT--CTCA--TGACGTAA-G--TTACA-T-GTCCCCAAAGTAAAG-TATTTG--T----GTCTATAAGAGA-AACTCATC--TT-TTAA-AGT-AAACAATATGA-CAAACCAAACTTGTCTT-GC-ATTAGAATA-CTTTTT-ACA--A--ATAAGA-G-AAAAA-GT--GGTTAAGC--A---C----TTCT--TG-TTGTC-----CAC--ATAAACAA-TTAGGTGTG-TCAATAATGTTTTTTCT-A--TACAAGT----CA-TA--ATTCA--AGATACAATTAT--GCC--T--CAGCTT----TGTGTGA----A--TAATATGT-AA----TAGGC-GTTTTCCC-AAA-ATTGA-AATG--CTTTGGAGGCAGTGCAGTGCTATTT--TTGACAATATTAGATAT---G-CGTCTT-CGAAAT-TGA-TTGATTGACG-AAGATTTTGTTACT----ACAT-TTGG--T-AAATCA-TTCC--ATTTAC-AAATGGCA-TCCGGAATGAAAGA-T-T-TCTTGT--AAATTTCA-A-G-TCTACATT--TT---GGTA--ATATATAATTTT-CTT--CATTTC---G-ATTG-CTGTA-TT-G---AAA--ACTTACTTT-----TGTCATACTATTGTCAAATAT---GT----CCATGTAAA-TATATGTAGGTA-CTG------TA----GTATACT-AT-CAT-
gi|4 : TAATATAC-AAATA-G-AG-AA---TATATGATA-AGTGCGCACTG---AA--T-TTTAAAGTTG-ATAAATC-AAGTA-AAATCGTA--TTTTGACATTACATATAT--ATATAG-TTT--GAACTG---CAG-AA-----AAAAT-T----TTTGCAG-T-TTAA------C-AT--CTCA--TGACGTAA-G--TTACA-T-GTCCCCAAAGTAAAG-TATTTG--T----GTCTATAAGAGA-AACTCATC--TT-TTAA-AGT-AAACAATATGA-CAAACCAAACTTGTCTT-GC-ATTAGAATA-CTTTTT-ACA--A--ATAAGA-G-AAAAA-GT--GGTTAAGC--A---C----TTCT--TG-TTGTC-----CAC--ATAAACAA-TTAGGTGTG-TCAATAATGTTTTTTCT-A--TACAAGT----CA-TA--ATTCA--AGATACAATTAT--GCC--T--CAGCTT----TGTGTGA----A--TAATATGT-AA----TAGGC-GTTTTCCC-AAA-ATTGA-AATG--CTTTGG-----AGGCAGT-CTA-TT--TTGACAATATTAGATAT---G-CGTCTT-CGAAAT-TGA-TTGATTGACG-AAGATTTTGTTACT----ACAT-TTGG--TAAATTCATGTTCAGATATAC-AAATAGCA-TCCGGAATGAAAGA-T-T-TCTTGGTTAAATTTCA-A-G-TCTACAT---TT---GGTAACTGATATAATTTT-CTTG-CGTTTC---G-AGTG-CT-TA-TT-GGAAAACTTA-----CTTTTGCAT-TTCT---ATTGTCAAATAT---GTCC-ATGG--TAAA-TATATGTAGGTA-CTGAGTATCTATCATGCGTT
gi|3 : TAATATAC-AAATA-G-AG-AA---TATATGATA-AGTGCGCACTG---AA--T-TTTAAAGTTG-ATAAATC-AAGTA-AAATCGTA--TTTTGACATTACATATAT--ATATAG-TTT--GAACTG---CAG-AA-----AAAAT-T----TTTGCAG-T-TTAA------C-AT--CTCA--TGACGTAA-G--TTACA-T-GTCCCCAAAGTAAAG-TATTTG--T----GTCTATAAGAGA-AACTCATC--TT-TTAA-AGT-AAACAATATGA-CAAACCAAACTTGTCTT-GC-ATTAGAATA-CTTTTT-ACA--A--ATAAGA-G-AAAAA-GT--GGTTAAGC--A---C----TTCT--TG-TTGTC-----CAC--ATAAACAA-TTAGGTGTG-TCAATAATGTTTTTTCT-A--TACAAGT----CA-TA--ATTCA--AGATACAATTAT--GCC--T--CAGCTT----TGTGTGA----A--TAATATGT-AA----TAGGC-GTTTTCCC-AAA-ATTGA-AATG--CTTTGG-----AGGCAGT-CTA-TT--TTGACAATATTAGATAT---G-CGTCTT-CGAAAT-TGA-TTGATTGACG-AAGATTTTGTTACT----ACAT-TTGG--TAAATTCATGTTCAGATATAC-AAATAGCA-TCCGGAATGAAAGA-T-T-TCTTGGTTAAATTTCA-A-G-TCTACAT---TT---GGTAACTGATATAATTTT-CTTG-CGTTTC---G-AGTG-CT-TA-TT-GGAAAACTTA-----CTTTTGCAT-TTCT---ATTGTCAAATAT---GTCC-ATGG--TAAA-TATATGTAGGTA-CTGAGTATCTATCATGCGTT
gi|8 : A---TATG-AATA-GGTCC--ACTA----A--T-TATAAAGTTGGATACATC-AAGTATAA-TC-TAAATTT-GACAT-----ACATT-ATGTAAATTTT-GAACTGATGCAG-AA-----AAAC--T----TTTGCAA-TGT-AA------C-ACAAC--A--TAACATAG-GG-TT-TA-T--TTCCCAAATAGAAG-TACTAGTGT----ATCTA---TAGAATAAT--TC--GTGTTAATAGC-AA-CAATTTGT-CAAACAAAACGTGTCTTGGC-ATTA-AATACTTTTTTTACA--A---TAA-A-G---AA--GT--GAT-TAGCATA--TC----TTCT--GG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG--CAATAATGGTTTTTCT-AATAACAAATAGAATA-TA--ATTTAGGA-ACACAA-GTT----C--T--CA-CTTTTTGTGTTGG-----A--TAATATTT-AAAGATATGAC---TTATCC-AAA-ATTGA-AATG--C-TTTG-----GAGCAGTGCT-TTT--TTGACAA-ATTAGATAT---G-CTTCTC-TCGAATGTGA-CTGATTGACA-AAGAT--TGTTAAC----TTGTGTTTG--TGAAACTCGTTCC--ATTTACTAAATG-TA-TCCAGAAGTAAAGA-T-TCTCTTG---TAATTTCGAG-T-CTTACA-----T---GGT
gi|10 : atatacaatagaaaatagtataataaagactA---TATGTAATAGATTAC--ACT----TAAGT-TATAAAGCTG-ATCAATTCAAGTA-AA-TC-TA--ATT-GACA-----------------G-GTTT-GAACAG---CAGGAA-----AAAAAATGCTGTTTACAT-T-T---------------------TGACGT---G--TT-AA-T-GGTCTAAAAGTAAAG-TATTTG--T----GTATATAATAGA-TTCC--TC--GT-CTAA-AGC-AAACAATTTGT-TAAATATGACATGTCTT-GC-ATTAGAATA--AATTTTACA--G--ATAA-A-GAAAAA--GT--GGT-AGGC--A---------TCT--TA-TTTTCACATACAT--GTAAATGC-TTTTGTGTG-T-G--AATTTATTTTCT-A--TGTA--T----C-------TTTA--AGATACAATTTT--ACC--T--CAGCTT----TGCGTGA----A--TTATATCT-GA----CAGCC-GTTTTTC--AAA-ATTGC-AATG--C-TTTG-----GAGCAGTG
gi|28 : ctgaatgcaattgtattgattaacgatagtggTTG---T----GTCTATAAGAGA-TAAC--TC--AT-CTAA-AGC-AAACAA
gi|25 : tT-CAAACATAACATGTCTT-GC-ATTATAATA--AGTTTTACG--A--ATAA-A-G-CAACT-GT--GAT-AAGC--A--ca
gi|2 : -GT-ATTA--ACA-TTTTTTTACATGACTGTAA-AAG-AAAAACGT--GGA-AGGCC-AGTTCACTGTTCTATCG-TTTCC-----CAC--ATAAACAA-TTAGGTGTG-TC-ATCATGTTTTTTCT-A--A-CAGTT----CA-TGTCATTTA--ATACACGA-ATTAAGCCCGT--AAGTTT----TGTTTG-----AGATAATATTT-AA----CTGGCCGTTTTTCCCAAACATTGA-AATTTTCTTTGG------AGC-GTGCTATTGAGTTGACAATATTAGATAT---GTCTTCTTGCTAAAT-TGA-CTGAT-GACG--AGATTTTGTTACCGAATTCAT-TTGG--TAAA-GCATT-CC--ATTTAC-AGATGA---TCTGGAATGAAAGAATAT-TCTTT---AAATTTCG-GCT-TCTA-ACCTTTT---GGTA--TCATATACTTTTTCTT--CATTT----C-GGTG-CTGTC-TTTG---AAC--A-----TTT-----T-CCCTAAA-CTG--A-CTATAGTTCA----CA--TAAA--AT---GAGGCAACTGTGT---TATGATG-ATTTTCATACATTGTGATTTAATTTCGCTTTTCTTCTCCTATTCGTT-AAATGGTCCCAACT-GTTT-AAGAGTATAT-GATTTCTTTGATGTCATAATAGATAA-CCTGT--CCAATTCTTGCAGCATGTAGC-GAACTTTAGTTCTAATTTTTACAA-A-CTGAA-TTGGAAACTCCATCCCATACCACAGAAGCATAATCTCTACCATATTGGTCTTTAACAAAC-GTATATACATTTT-GACAGTTTATCTCTACAC-GAGTAAACTTTGAGTTTTTATAATCAATC-TAACTTTTTACTAAAGGCAGGATTTACAAAATATTAATCAATCGTA-ACAG--ACAGGACCATTTAAAA---T--T-CATCTGAAAAATCA-A-ACCAAGATGCTTAA--TGCGA----TGAAACAAT-TTCTAAATTACAACCTGAAAAAAGCAGTTGAGGTATTT------GGTTATG-------T-CTGATTT------ACC-AAA--AAT---AAAACCTTGT-TTTGATTTGGGATTAAATTG--GTAAC---CA-ATCTTTCAGACCATTTTTTCTAAT-ATTGCTAAAAGCATGATTAAAGT---AGGCACATTCT---A-GTTGTTTA-A--A-TTC----TTA-CCG-CATATA-TGGAATT-GA----AT--GTCATCCAGCATATTACCGA----CAAAGAGATAATAGTTATGAAGTGAGCAACATCGTTGGACATGAGTGTTA--TCAAAAACAACAAATGGACC-A-AGGACGGAACCTATGTGGCACTCCAGCATTA-ATTT-T-CA--AA--------CTGTGTTG-----AT-ACAAATCTTTATACA-TAA--TTTTGCTGTC-TAATTGAT--ATA-GAA-AGTTTTAAA-CCA--TTGAAAAAGATTTCACGTCATCG-CGAT--CGT---TTTGTAATTTGAAGAAAGAAGACCCTCAT-TGCCAGAACGACTCTGTCAAATGC-CTT-T-GACAGAATCGCCATA-----------------------A-AAAA-C-ATACATAT-TGACTTTc
gi|27 : CAATTAT--GCC--T--CAACTT----TGCGTA-----AA-TAATATTT-AA----CAAGC-G-TTTTCCAAAA-t
gi|19 : AAAT-TGA-CTGATTGACA-AATATTTGAATATA----TCAT-TGGG----AAAACATTCCG--TTTTGC-AAATGTCA-TCTGGAACGAA--A-T---------------TTCG-A-G-TATACATT--TT---GATG--ATATGCGATTTT--TTAAAATTT----GTAGTG-CTATA-TT-G---AAC--A-----TTT-----T-
gi|24 : taaTTC--ATTTTT-GAACGACA-TCTGGAATGAATGA-T-T------------ATTTT-G-TGTTTACATG--TT---AGAA--ATATATAGTTGT-CTT--CATTcttattg
gi|22 : GATGCCAAAATAGACAAACCAGTTACAA-TTGTTGCAGCGTGTAATTGAATTTT--TTCTA-TTTTTTTAATATCTGAAATTGCACA-TCCA
gi|11 : TGAAATTGAACA-TCCATCCCATACTATTGAAGCATATTCT--A--ACATTGGTCTT--ACAAAAGTTACATACATTTTTGAAAGTTTTTCTCTACATAGAATAAA-TTTAAG-TTTCTTAATCAGTCCTAACTTTTTA-TA--AGCATGATTTACAA--TGGTA-TCAAT-GTACACAG--AC-----CATTTCAAA------T-CATCTGAAAAAAATCAGACCAAGATGCTTAATATGCGA----TGAAACA-AATTCTAATCGACAACCTTGAAAAAGCAATTGAGGTATTT------GGTTGTG-------TGCTGATTT------CCCAAAA--AAT---AAAACCTTGGTTTT-ATTT-GGATTAAGTTGAAGTAAC---TA-GTC-CTCAGACCA-TTTTTCCAAT-ATT
gi|7 : TTTCTAAGTTAAGCC-AAGTCTTTA-TTC--GCATTATTTACAA--TGTTA-TTAGC-ATACATAGTGAC-----CAGCTTAAATTAA--TTCATTCGTAAAAGTAAG-ACCAAGGTGCTT----TGTGAACAGTAAAATA-T-G-CAGGCTGACATTGTTGAAACATTACTT----TTTTTTTTTTTGGTCATGGTAAAAGTATTGATTTTGTTTTATTCAAATTAATTTGAAAA--TTAA-TTT-ATTT-----CAAATTAA--TCAC---AA-GAAGTTTGGACCA-CTCATCTAAG-ATTATTA-GATCATGATT--------------ATTTTAACATGTTGTTTA-ATCACTGCAACATTATACGACG-ATCTTTGAA-TAGA----ATT-GTCAT-CTGCAAATAATCTA----CACATTGACAACA--TACTG--TCTGATACAACGTA-AATATA-----GATTTTAAAAAT-GC-AGAGGT-CTC-AGGACTGAGCCT-TGGGGAACACCAACAGTATG-CT-T-C-------------C--GGTTGAAGAAATAG-AAATGTATATATA-TA------TAC-GTC---ACT-AT--ATA-TATTTGTTCTCTA-TTA--TTTAAATA-ATTTG----TA------AACTTATGGGCTT--AGTTTGA--AAAAAAGGCCTTTA--TTTCA----CACTTTGTCGAAGGC-T-TATAGAAGG-GTCAC---A-----------------------A-AAATCC-ATACG-AAATAATCTTCCCTCATT-Act
gi|15 : AA--AC-----CATNNNNNN---NNNT-TATTAGAAAAGGTGAG-ACCAAGATGTTTG---TAAGA------AATTA-T-TTCTAATTGACAATTTTTAACATGCAGTC----------------ATTATG-------ACTTGCCTT------GTAAAAG--AAT---AAAACCATAGTTTT-ATTA-AGATTAAATTTCAATATC---CA-TTC-TTCA-------------AGT-ATTTTGA-GATCGTGATT-A
gi|9 : tgatttgccttgtaaaagaataAGTAACGCCCATGTA-TT-AGACCAGTTTTTTTAATCATATCAA-GGTCATTTGT-AAGTTAAA--GAGA-------ATG--GTTTACA--ATACCA---TTATCAA-TG-ATA-GCAAA-T-AAGGAGAT--GTAAT-CAGCAAATAATCGAATTTTATTAGGA----A--TATCA--TTGGTGACGTCATT-GATATA-----AA--GTAAGGACAAG-AATAGA-C-CTAGTACTGACCCC-TGAGGTACCCCATCATTA-A-TTATACAGTAATATTTTCTT--TGTAG-----AT-GTAAAACCTTCTACAGTTACTCTTTGCTGTT-T-CTG-AG--TTA--AGTAG-TTTTAATCCAGCTT--AATATATTAC----CTACA-A-AACCCA-ACCTCTGAAGTTTAT--GAACAAAA--CTTAAGTGCCA----AACTCGGTTAAACGC-T-T-T-GGGAA-AT------A-----------------------ATAAAAC-----GA-ATAT-CTTTCCCTTTATCAAGACTTTGAATTAT---TTT-------ATTACACATTT-CTACCAGCTGGT
gi|14 : gcACGTTTTGC-GTCCT-ATG-ATCGATATAAATAACCTATAAACCA--CTGTAGAAGATTAC----CA--GAT-ATATCATACGTTTGTAATTTAA--ATATGAGAGCACTA--TGCCA----CACTTTGTCAAATGCTT-T-T-GATAG-ATCAC---A-----------------------A-AAGGCC-ATAAA-GCACGATTTACCGTCATCGATGTTTTGGACGAT---GTTAAGGTACATG-TATATTT-TAAGAAGCTGttacagttaaatctcctggc
gi|17 : cagatcctt-C-ATACGGTGTGTTTATAATTTGA--AAATGAGGCTCCCA--AGCCA----TACTCTATCAAAATC-T-T-TGGAAAA-ATCAC---AAAAATAAATAAATAGTGGTAAATA-AAAATCCACACG-ACACAATTTACTATC--C-ACATTTTGAACATTTGAACT-------TTG-TATATTTGTAATAA-TTGAT-AACCGTAAtat
gi|26 : GACCCTCA--TGCCA----GACTCTGTCAAATGC-T-T-T-GACAG-ATCGC---A-----------------------A-AAAACC-ATAaatga
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): TTAACAGTAATTTCTATTTCAGCAACGCTATTTGATGAATATTGGAAAGAATTATCAACTGCAAAAAGTCTGCACATAGACAGCATTTTGTCTGAAAC
Alignments
lowQualScore : 1 11111111111111 11 1 22222 11 1 11 11 11 222 222 1 1 22222222222 11111 111 11 111111 111 11111 11 222 11 1 11111 444444444 33333 11 2 11 11 111 2 1 1 1 1 2 2 2 2 22 33 2 1 55555 33 1 11 2 11 11111 11 1 1 22222222 2222222 22222 22222222 1 11 1111 33333333333333 111 33333333 1 11 5555555555555 3333333333333 1111 11 111 22222222 1 2222 1 11 1111111111 1 333333333 1 222 1 5555555555555555555555555 22222 111 1 22222 1 11111 11 11 1111 11 11111 1 111 55555555555555555555555 1 1 555555555555 1 1 1
lowQualScore : 0 3 333 6 555 88888888888888 6 22 2 44 3 555 8 3 3 0 3 9 9 44 9 33333 11 3 3 3 555 44 999 3 3 3 999999 3 44 33 44 3 22 99 8 4 3 55 7777 4 4 666 4 4 4 4 1 0 4 4 2 777 4 55 777 2 3 4 55 2 55555555555 66 4 11111 66 4 4 2 4 111 9999 4 66 55 4 2 66 66 0 66 66 00 4 1 4 0 4 9999 8 4 4 5 66 8 222222 2 5 77 000 5 1 5 5 0 5 5 3 11111 5 66 2 44 6 22 4 3 4 88888 000 22 4 4 66 999 66 1 33 5 0 2 888 5 5 6 5 7 44444 555555555 00000 88 3 3 77 33 6 0 0 8 44 999 2 3 5 5 5 5 0 3 2 0 0 0 4 1 7 1 7 11 1 77 7 00 7 1 3 7 3 1 0 1 1 11111 0 00 1 4 0 7 1 1 11 3 3 2 3 33 99999 33 0 0 2 44444444 8 1 6666666 4 88888 22222222 0 6 8 0 00 1 1111 0 7777 0 8 5 11111111111111 111 6 00000000 1 3 6 1 44 8 8 1111111111111 3 3 5555555555555 3 2222 44 111 77777777 0 4 1111 1 22 0 0 33 8888888888 2 0 000000000 3 0 666 2 9 1 0 1 1 1 1 6666666666666666666666666 55555 222 0 55555 0 55555 1 11 8 88 4 8 11 66 1 5 66 8 4444 999999 6 99 88 0 33 33333 1 5 5 5 1 1 5 0 000 5 22222222222222222222222 5 5 6 333 1 3 2 66 2 1 444444444444 0 0 1 2 3
lowQualScore : . . ... . ... .............. . .. . .. . ... . . . . . . . .. . ..... .. . . . ... .. ... . . . ...... . .. .. .. . .. .. . . . .. .... . . ... . . . . . . . . . ... . .. ... . . . .. . ........... .. . ..... .. . . . . ... .... . .. .. . . .. .. . .. .. .. . . . . . .... . . . . .. . ...... . . .. ... . . . . . . . . ..... . .. . .. . .. . . . ..... ... .. . . .. ... .. . .. . . . ... . . . . . ..... ......... ..... .. . . .. .. . . . . .. ... . . . . . . . . . . . . . . . . . .. . .. . .. . . . . . . . . . ..... . .. . . . . . . .. . . . . .. ..... .. . . . ........ . . ....... . ..... ........ . . . . .. . .... . .... . . . .............. ... . ........ . . . . .. . . ............. . . ............. . .... .. ... ........ . . .... . .. . . .. .......... . . ......... . . ... . . . . . . . . ......................... ..... ... . ..... . ..... . .. . .. . . .. .. . . .. . .... ...... . .. .. . .. ..... . . . . . . . . ... . ....................... . . . ... . . . .. . . ............ . . . . .
lowQualScore : 0 3 777 7 444 11111111111111 2 77 8 22 1 444 2 1 1 2 1 2 2 22 2 11111 22 3 2 3 888 66 000 3 3 3 666666 3 66 88 66 3 55 55 0 0 6 00 7777 2 4 555 0 0 0 0 0 3 0 0 5 666 0 55 000 0 2 0 55 0 44444444444 11 4 11111 11 4 4 7 4 444 4444 4 11 66 0 2 11 11 1 11 11 66 4 0 4 9 4 7777 9 4 4 0 99 8 888888 5 0 99 000 7 0 7 7 7 0 0 2 66666 0 99 0 66 2 22 4 7 4 88888 000 66 4 4 11 888 99 0 88 0 0 0 888 7 7 6 7 9 33333 777777777 33333 00 0 7 77 00 7 8 8 0 00 222 5 0 5 5 5 5 0 0 5 0 0 0 0 0 3 0 3 33 0 33 3 33 3 0 7 3 2 0 0 0 0 33333 7 77 0 0 7 3 0 0 00 3 2 5 2 88 22222 88 0 0 5 22222222 0 0 8888888 6 44444 44444444 8 0 0 8 66 0 0000 8 4444 8 0 6 88888888888888 777 7 88888888 0 3 7 0 44 0 0 0000000000000 2 2 5555555555555 2 0000 22 000 00000000 0 0 2222 0 00 5 2 88 5555555555 0 0 888888888 2 0 222 5 2 0 0 0 0 0 0 5555555555555555555555555 00000 222 0 88888 6 66666 0 00 8 88 4 0 00 00 0 0 00 0 3333 777777 7 22 55 7 66 11111 0 7 7 7 4 0 7 4 000 7 99999999999999999999999 7 7 4 666 0 8 8 22 8 0 888888888888 0 0 0 5 3
consensus : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AAGTTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTTG-AACTG---CAG--AAAAAAN-TTTTGCAG-T-T-AA------TA-T--C--A--TAACGCAA-G--TT--CAT-GTCCCCAAAGCAAAG-TA-TT--TGTGT----CTATAATAGATAACTC-T-TT-CTAA-AGC-AAACAATTTGT-CAAACANAACATGTCTT-GC-ATTAGAATAC-TTTTTTA-CA--AAT---AA-AGAAAAA-GT--GG-TAGGC--A--TC----TTCT--TG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG-TCGATAATGTTTTTTCT-A--NACAAGT----CA-TA--ATTTAAG-ACAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATTT-AACAGGC-GT---TTTTCC-AAA-A-TTGA-AATG--CTTTGG-----GAGCAGTGCTATTT--TTGACAATATTAGATAT---G-CTTCT-T-CGAAATTGA-CTGATTGACG-AAGATTTTGTTACCN----CAT-TTGG--TAAAANCATTTCC--ATTTAC-AAATGGCA-TCCGGAATGAAAGA-T-T-TCTTG---AAATTTCGAGT-C-TA--CA-T-TT--GGTAAT--ATATAATTTT-CTT-CATT---TCG-AGTG-CTGTA-TTGGA-----ACATTT---------TTCCT-A-A-ATTGTCAANTAT-GT-CCACCGTAAA-TATATGTAGGTA-CTG-AGTAT-CTATCATGCGTTTTCATACATTGTGATTTAATTTCGCTTTTCTTCTCCTATTCGTTCAAANGNTCCCAACCCGTTTCAAGAGTATAANGATTCCTTTGATGCCAAAATAGACAAACCGGTTACCAATTCTTGCAGCATGTAGCTGAACTTT--TTCTAATTTTTNCAA-ATCTGAAATTGNACA-TCCATCCCATACCACAGAAGCATATTCT--A--ATATTGGTCTT--ACAAACG-TATATACATTTTTGACAGTTTATCTCTACANAGAGTAAA-TTTGAGTTTTCTTAATCAATCCTAACTTTT--TAT---AAGCATGATTTAC--AATGTT-ATCAA-CGTACACA-----G--ACCA-TTTNAA---AT--TCATCTGAAAAAG--CGAGACCAAGATGCTTAAT--G--CGATGAAAC-AT-TTCTAATTGACAACCTTGAAAAAGCAGTTGAGGTATTTGGTTATGTNC-TGATTTACCAAAAAATAAAACCTTGGTTTTATTC-GGATTAAATTGAAG-----------T--AAC---CA-GTC--------TTCAGACCA-TTTTTCTAAT-ATTTC-GA-GATCATGATT-AAGT-A-A----ATTCTATGTTGTTTA-A--ATTCCA---TTATCCG-CG-ATATC-GAA-T-GA----ATT-GTCAT-CAGCANATAACCGA----CANAAAGATAACA--TAT--CGTNAGNAACATCGTT-GACATA-----NA--TCAAAAACAAC-AATGGAC-C-AGNACTGAACCT-TGNGGCACTCCAGCATTA-A-TT-T-CA--AA--------C--TGTTG-----AT-ACAAATCTTTATACA-TAA-CT-TTTGCTGTC-TA--TGAT--ATANAA-TAGTTTTNAA-CCA--TTGAAAAAGATTTCC-A-CG-CATNCCGTACG-TTTGTAATTTGA--AAANAAGACCCTCA--TGCCA----NACTCTGTCAAATG-C-TT-T-GANAG-ATCGC---AA-AA-----------------------AAC-C-ATACGACACGATTTNCCNTCATCGATATTTTGAACGATNTT-------A----TG-TATATTT-TAATAAGCTGGT-AACCGTAA
Reference ( family-339 ) : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AAGTTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTTG-AACTG---CAG--AAAAAAN-TTTTGCAG-T-T-AA------TA-T--C--A--TAACGCAA-G--TT--CAT-GTCCCCAAAGCAAAG-TA-TT--TGTGT----CTATAATAGATAACTC---TT-CTAA-AGC-AAACAATTTGT-CAAACANAACATGTCTT-GC-ATTAGAATAC-TTTTTTA-CA--AAT---AA-AGAAAAA-GT--GG-TAGGC--A--TC----TTCT--TG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG-TCGATAATGTTTTTTCT-A--NACAAGT----CA-TA--ATTTAAG-ACAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATNT-AACAGGC-GT---TTTTCC-AAA-A-TTGA-AATG--CTTTGG-----GAGCAGTGCTATTT--TTGACAATATTAGATAT---G-CNTCT-T-CGAAATTGA-CTGATTGACG-AAGATTTTGTTACCN----CAT-TTGG--TAAAANCATTTCC--ATTTAC-AAATGGCA-TCCGGAATGAAAGA-T-T-TCTTG---AAATTTCGGGT-C-TA--CA-T-TT--GGTANT--ATATAATTTT-CTT-CGTT---TCG-AGTG-CTGTA-TTGGA-----ACATTT---------TTCCT-A-A-ATTGTCAAATATAGT-NCACCGTAAA-TATATGTAGGTA-CTG-AGTAT-CTATCATGCGTTCTCATACATTGTGATTTAATTTCGCTTTTCTTCTCCTATTCGTT-AAATGGTCCCAA-CTGTTT-AAGAGTAT-ATGATTTCTTTGATGCCANAATAGACAAACCNGTTACNAATTNTTGCAGCGTGTAGCTGAACTTTAGTTCTAATTTTTNCAATATCTGAAATTGNACA-TCCATCCCATACCACNGAAGCATANTCTCTACCACATTGGTCTTTAACAAANGNTACATACATTTTTGANAGTTTNTCTCTACACAGAGTAAACTTTGAGTTTTCTTAATCAATCCTAACTTTT--TAT---AGGCATGATTTAC--AATGTT-ATCAA-CGTACACA-----G--ACCA-TTTNAA---AN--TCATCCGAAAAAG--CGAGACCAAGATGCTTAAT--G--CGATGAAAC-AT-TTCTAATTGACAACCTTGAAAAAGCAGTTGAGGTATTTGGTTATGTNC-TGATTTACCAAAAAATAAAACCTTGGTTTTATTT-GGATTAAATTGAAG-----------T--AAC---CA-GTC--------TTCAGACCA-TTTTTCTAAT-ATTNC-GA-GATCATGATT-AAGT-A-A----ATTCTATGTTGTTTA-A--ACTNCA---TTATCCG-CG-ATATC-GAA-T-GA----AT--GTCAT-CAGCAAATAATCGA----CANANNGACAACA--TAT--CGTCGGCGACGTCGTT-GATATA-----NA--TTAAAAACAAC-AATGGAC-C-AGGACTGANCCT-TGNGGNACNCCANCATTA-A-TT-T-CA--AA--------C--TGTTG-----AT-GCAAATCTTTATACA-TAA-CT-TTTGCTGTC-TA--TNAT--ATANAA-TAGTTTTTAA-CCA--TTGAAANAGATTNCC-A-CG-CATNCCGTGCG-TTTGTAATTTGA--AAACGAGACCCTCA--TGCCA----NACTCTGTCAAANG-C-TT-T-GANAG-ATCGC---AA-AA-----------------------AAC-C-ATACGACACGATTTNCCNTCATCGACGTTTTGAACGATNTT-------A----TG-TATATTT-TAANAAGCTGGT-AACCGTAA
gi|1 : ATATAA-ATAC-AAATG-T-ATCAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTTG-AACTG---CAG--AAAAAAAATTTTACAG-T-T-AA------TA-T--C--A--TAATGCAA-G--TT--CAT-GTCCCCAAAGCAAAG-TA-TT--C-TAT----CTAAAATAGATAATTC---TT-CTAA-AGC-AAACAATTTGT-CAAACATAATATGTCTT-GC-ATTAGAATAT-TTTTTTA-CA--AGT---AA-AGAAAA--GT--GG-TAGGC--A--TC----TTCT--TG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG-TCGATAATGTTTTTTCT-A--AACAAGT----CA-TA--ATTTAAT-ACAC-AATATTGCC--T--CAGC--TTTG--TT--TG--ATAATATTT-AACTGGC-GT---TTTTCCAAAA-A-TTGA-AATG--CGTTGG-----GAGCAGTGCTATTT--TTGAAAATATTA-ATAT---G-CTTCT-T-CTAAATTGA-CTGATTGACGCAAGATTCTGTTACCT----CAT-TTGG--TAAAAGCATTTCC--ATTTAC-AGATGACA-TCTGGAATGAAAGA-T-T-TCTTA---AAAATTCGGTT-C-TA--CA---TT--GGTATT--ATATAATTTT-CTT-CATT---T-G-AGTG-CTGTA-TT-GA-----ACATTT---------TTCCTAA-A-ATTG--AACTAT-TT-ATACCATAAA-TAT---TGGGCA-CTG--GT----TATGATGCATT-TTAT-CA-TGTGA-TTAATTTCGCTTTTCTTCTCCT-TTCGTTCAAAGGTTCCCAACCCGTTTCAAAAGTATAAAGATTCTTTTGATGCCAAAATAGACAAACCGGTTACC-ATTCTTGCAG-ATGTAGCTGAACTTT--TTCTAATTTTTCCAA-ATCTGAAATTGCACA-TCCATCCCATACCACAGAAGCATATTCT-GA--ATATTGGTCTT--ACAAACTGTATATACATTTTTGACAGTTTATCTCTACAAAGAGTAAA-TTTGAGCTTTCTTAATCAATCCTAACTTTTTATAT---AAGCATGATTTAC--AATATT-ATCAA-TGTACACA-----G--ACCA-TTTCAA---AA--TCATCTGAAAAAA--TACAACCAAGATGCTT-AT--G--CGATGAAAC-AT-TTCTAATTGACAACCTTGAAAAAGCAGTTGAGGTATTTGGTTATGTGC-TGATTTACCAAAAAATAAAACCTTGG-TTTATTT-GGATTAAATTGAAG-----------T--AAC---CA-GTC--------TTCAGATCA-TTTTTCTAAT-ATTTC-TATGATCATGATT-AAGT-ACAC---ATTCTATGTTGTTTA-A--ATTTC----TTATCCG-CA-ATATT-GAA-T-GA----ATTGGTCAT-CAGCATATAACCGA----CAAAAAGATAACA--TAT--TATGAGGAACATCATT-GACATA-----TA--TCAAAAACAAC-AATGGAC-A-AGTAC-GAACCT-TGTGGCACTCCAGCATTA-A-TT-T-CA--AA--------C--TGTTG-----ATAACAAATCTTTATACA-TAACCT-TTTGCTGTC-TA--TTAT--ATAGAA-TAGCTTTTAA-CCA--TTGAAAAAGATTTCC-ACCG-CATTCCGTACG-TTTGTAATTTGA--AAAGAAGACCCTCA--TGCCA----GACTCTGTCAAATG-C-CT-T-GACAG-ATCGC---AA-AA-----------------------AAC-C-ATACAACATGATTTTCCATCATC-ATATTTTTAACAATGCT-------A----TGATATGTTT-TAATAAGTTGGTAAACTGTAA
gi|10 : CTGA-ATGC-AATTG-T-ATTGA---TTAACGATAGTGGATATGTAATAGATTAC--ACT-TAAGT-TATA---AAGCTG-ATCAATTCAAGTA-AA-TC-TA--ATT-GACA-----------------G-GTTTG-AACAG---CAGGAAAAAAAA-T---GCTG-T-T-TA------CA-T--T--T--TGACGT---G--TT--AAT-GGTCTAAAAGTAAAG-TA-TT--TGTGT----ATATAATAGATTCCTC---GT-CTAA-AGC-AAACAATTTGT-TAAATATGACATGTCTT-GC-ATTAGAATAA--ATTTTA-CA--GAT---AA-AGAAAAA-GT--GG-TAGGC--A---------TCT--TA-TTTTCACATACAT--GTAAATGC-TTTTGTGTG-T-G--AATTTATTTTCT-A--TGTA--T----C-------TTTAAG-ATAC-AATTTTACC--T--CAGC--TTTG--CG--TGA-ATTATATCT-GACAGCC-GT---TTTT-C-AAA-A-TTGC-AATG--CTTT-G-----GAGCAGTGtga
gi|11 : TGAAATTGAACA-TCCATCCCATACTATTGAAGCATATTCT--A--ACATTGGTCTT--ACAAAAGTTACATACATTTTTGAAAGTTTTTCTCTACATAGAATAAA-TTTAAGTTT-CTTAATCAGTCCTAACTTTT--TAT---AAGCATGATTTAC--AATGGT-ATCAA-TGTACACA-----G--ACCA-TTTCAA---A---TCATCTGAAAAAAATC-AGACCAAGATGCTTAATATG--CGATGAAAC-AAATTCTAATCGACAACCTTGAAAAAGCAATTGAGGTATTTGGTTGTGTGC-TGATTTCCCAAAAAATAAAACCTTGGTTTTATTT-GGATTAAGTTGAAG-----------T--AAC---TA-GTC--------CTCAGACCA-TTTTTCCAAT-ATT
gi|12 : ATTTAA-ATAC-AAATG-T-ATAAA---T--------------A-GTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-ATTTG-AACTG---CAG--AAAAAAA-ATT-ACAG-T-T-AA------TAAT--C--A--TAATGCAA-G--TTTTCAT-GTCCCCAAAGCAAAG-TA-TT--TGTAT----CTATAATAGATAACTC---TT-CTAA-AGC-AAACATATTGT-CAAACAAA--ATGTCTT-GC-ATTAGA------TTTTTA-CA--AGT---AA-AGAAAAA-A---GG-TAGGC--A--TC----TTCT--TG-TTTTC-----CA---ATAAACAATTTAGGTGTG-TCGATAATGTTTTTTCT-A--AACAAGT----CA-TA--ATTTAAT-ACAC-ct
gi|13 : ATCTAA-ATAC-AAATG-TCATTGAATAT--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGATTAATATAG-TTTTGGAACTG---CAG--AAATA---TTTTACAG-T-TTAA------TA-T--C--A--TAATGCAACG--TTT-CATTGTCCCCAAAGCAAAG-TA-TT--TGTATAGATCTATGATAGATAACTC---TT-CTAA-AGC-AAACAATTTAT-CAAACATAACATttt
gi|14 : T-TTTGC-GTCCTA--TGATCGATATAAATAACCTATAAACCA--CTGTAGAAGATTACC-A-GA-TATATCATACG-TTTGTAATTTAA--ATATGAGAGCACTA--TGCCA----CACTTTGTCAAATG-CTTT-T-GATAG-ATCAC---AA-AA-----------------------GGC-C-ATAAAGCACGATTTACCGTCATCGATGTTTTGGACGATGTTAAGGTACA----TG-TATATTT-TAAGAAGCTGtgaattttatttaaggtctctacacataatacaaacaaat
gi|15 : cagatccttacgA-----A--ACCA-TNNNNN---NNNNTTATTAGAAAAGG--TGAGACCAAGATGTTT-----G--TAA-GAAATTAT-TTCTAATTGACAATTTTTAACATGCAGTC----------ATTATGACT-TGCCTTGTAAAAGAATAAAACCATAGTTTTATTA-AGATTAAATTTCAA-----------T--ATC---CA-TTC--------TTCA-------------AGT-ATTTT-GA-GATCGTGATT-Atat
gi|16 : tgatttgccttgtaaaagaataATATAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAA-TTTTG-AACTG---CAG--AATTTTT-TTTTACAG-T-T-AATACATGTA-T--C--A--TAATGCAA-GTTTT--CAT-GTCCAC-AAGCAAAG-TA-TT--TGTAT----CTATAATAGATAA
gi|17 : -CATACGGTGTG-TTTATAATTTGA--AAATGAGGCTCCCA--AGCCA----TACTCTATCAAAAT-C-TT-TGGAAAA-ATCAC---AA-AAATAAATAAATAGTGGTAAATAAAAAT-CCACACGACACAATTTAC---TATCCACATTTTGAAC-ATTTG-------AACTTTG-TATATTTGTAATAA-TTGAT-AACCGTAA
gi|18 : ATCTAA-ATAC-AAATG-T-ATTGA---T--------------ATATAATA-AGTAT--ACTAAA--T-TATATATAAATTG-ATAAATT-A-TTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTTG-AACTG---CAG--AAAAAAA-ATTGGCAG-T-T-AA------TA-T--C--A--TAACGCAA-G--Taatga
gi|19 : taAAATTGA-CTGATTGACA-AATATTTGAATATAT----CAT-TGGG----AAAACATTCCG--TTTTGC-AAATGTCA-TCTGGAA---------------CG---AAATTTCGAGT-A-TA--CATT-TT--GATGAT--ATGCGATTTT-TTA-AAAT---TTGTAGTG-CTATA-TT-GA-----ACATTT---------Tagattggtaatcccagcagcacacattttg
gi|2 : taa-GT-ATTA--ACAT-TTTTTTA-CATGACTGTAAA-AGAAAAACGT--GG-AAGGCC-AGTTCACTGTTCTATCG-TTTCC-----CAC--ATAAACAA-TTAGGTGTG-TC-ATCATGTTTTTTCT-A---ACAGTT----CA-TGTCATTTAAT-ACACGAATTAAGCCCGT--AAGT--TTTG--TT--TGAGATAATATTT-AACTGGCCGT---TTTTCCCAAACA-TTGA-AATTTTCTTTGG------AGC-GTGCTATTGAGTTGACAATATTAGATAT---GTCTTCT-TGCTAAATTGA-CTGAT-GACG-A-GATTTTGTTACCGAATTCAT-TTGG--TAAA-GCATT-CC--ATTTAC-AGATG--A-TCTGGAATGAAAGAATAT-TCTTT---AAATTTCGGCTTC-TAACCT-T-TT--GGTATC--ATATACTTTTTCTT-CATT---TCG--GTG-CTGTC-TTTGA-----ACATTT---------TCCCT-A-A-ACTG---ACTATAGT-TCAC-ATAAA----ATG-AGGCAACTG-TGT----TATGATG-ATTTTCATACATTGTGATTTAATTTCGCTTTTCTTCTCCTATTCGTT-AAATGGTCCCAA-CTGTTT-AAGAGTAT-ATGATTTCTTTGATGTCATAATAGAT-AACCTGT--CCAATTCTTGCAGCATGTAGC-GAACTTTAGTTCTAATTTTTACAA-A-CTG-AATTGGAAACTCCATCCCATACCACAGAAGCATAATCTCTACCATATTGGTCTTTAACAAACG-TATATACA-TTTTGACAGTTTATCTCTACAC-GAGTAAACTTTGAGTTTTTATAATCAAT-CTAACTTTT--TACTAAAGGCAGGATTTACAAAATATTAATCAATCGTA-ACAGACAGG--ACCA-TTTAAA---AT--TCATCTGAAAAAT--C-AAACCAAGATGCTTAAT--G--CGATGAAACAAT-TTCTAAATTACAACCTGAAAAAAGCAGTTGAGGTATTTGGTTATGT-C-TGATTTACC-AAAAATAAAACCTTGTTTTGATTTGGGATTAAATTG--G-----------T--AAC---CA-ATCT-------TTCAGACCATTTTTTCTAAT-ATTGCTAA-AAGCATGATTAAAGT-A-GGCACATTCTA-GTTGTTTA-A--ATTC-----TTA-CCG-CATATATG-GAATT-GA----AT--GTCATCCAGCATATTACCGA----CAAAGAGATAATAGTTATGAAGTGAGCAACATCGTTGGACATGAGTGTTA--TCAAAAACAACAAATGGAC-CAAGGACGGAACCTATGTGGCACTCCAGCATTA-ATTT-T-CA--AA--------CTGTGTTG-----AT-ACAAATCTTTATACA-TAA--T-TTTGCTGTC-TAATTGAT--ATAGAA--AGTTTTAAA-CCA--TTGAAAAAGATTT-C-A-CGTCATCGCGATCGTTTTGTAATTTGAAGAAAGAAGACCCTCAT-TGCCAGAACGACTCTGTCAAATGCC-TT-T-GACAGAATCGCCATAA-AA-----------------------AA--C-ATACcttattg
gi|20 : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTTG-AACTG---CAG--AAAAAAG---TTACAG-T-T-AA------TA-T--C--A--TAATGCAA-G--TT--atattgactttt
gi|22 : aGATGCCAAAATAGACAAACCAGTTAC-AATTGTTGCAGCGTGTAATTGAATTTT--TTCTA-TTTTTTTAATATCTGAAATTGCACA-TCCAt
gi|23 : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-CATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AG
gi|24 : taTTC--ATTTTT-GAACGACA-TCTGGAATGAATGA-T-T-----------ATTTTGTGT-T-TA--CA-TGTT--AGAAAT--ATATAGTTGT-CTT-CATT---
gi|25 : T-CAAACATAACATGTCTT-GC-ATTATAATAA--GTTTTA-CG--AAT---AA-AGCAACT-GT--GA-TAAGC--A--
gi|26 : GACCCTCA--TGCCA----GACTCTGTCAAATG-C-TT-T-GACAG-ATCGC---AA-AA-----------------------AAC-C-ATAc
gi|27 : C-AATTATGCC--T--CAAC--TTTG--CG--TAA-ATAATATTT-AACAAGC-G----TTTTCC-AAA-A-aa
gi|28 : -TT--TGTGT----CTATAAGAGATAACTC---AT-CTAA-AGC-AAACAA
gi|3 : TAATATAC-AAATA-G-AG-AA---T--------------ATATGATA-AGTGCGCACTGAA--T-TTTA---AAGTTG-ATAAATC-AAGTA-AAATCGTA--TTTTGACATTACATATAT--ATATAG-TTT-G-AACTG---CAG--AAAAAAT-TTTTGCAG-T-TTAA------CA-T--CTCA--TGACGTAA-G--TTA-CAT-GTCCCCAAAGTAAAG-TA-TT--TGTGT----CTATAAGAGA-AACTCATCTT-TTAA-AGT-AAACAATATGA-CAAACCAAACTTGTCTT-GC-ATTAGAATAC--TTTTTA-CA--AAT---AAGAGAAAAA-GT--GGTTAAGC--A---C----TTCT--TG-TTGTC-----CAC--ATAAACAA-TTAGGTGTG-TCAATAATGTTTTTTCT-A--TACAAGT----CA-TA--ATTCAAG-ATAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATGT-AATAGGC-GT---TTTCCC-AAA-A-TTGA-AATG--CTTTGG-----AGGCAGT-CTA-TT--TTGACAATATTAGATAT---G-CGTCT-T-CGAAATTGA-TTGATTGACG-AAGATTTTGTTACTA----CAT-TTGG--TAAATTCATGTTCAGATATAC-AAATAGCA-TCCGGAATGAAAGA-T-T-TCTTGGTTAAATTTCAAGT-C-TA--CA-T-TT--GGTAACTGATATAATTTT-CTTGCGTT---TCG-AGTG-CT-TA-TTGGA-----AAACTTACTTTTGCATTTCT-----ATTGTCAAATAT-GT-CCATGGTAAA-TATATGTAGGTA-CTG-AGTAT-CTATCATGCGTTca
gi|4 : TAATATAC-AAATA-G-AG-AA---T--------------ATATGATA-AGTGCGCACTGAA--T-TTTA---AAGTTG-ATAAATC-AAGTA-AAATCGTA--TTTTGACATTACATATAT--ATATAG-TTT-G-AACTG---CAG--AAAAAAT-TTTTGCAG-T-TTAA------CA-T--CTCA--TGACGTAA-G--TTA-CAT-GTCCCCAAAGTAAAG-TA-TT--TGTGT----CTATAAGAGA-AACTCATCTT-TTAA-AGT-AAACAATATGA-CAAACCAAACTTGTCTT-GC-ATTAGAATAC--TTTTTA-CA--AAT---AAGAGAAAAA-GT--GGTTAAGC--A---C----TTCT--TG-TTGTC-----CAC--ATAAACAA-TTAGGTGTG-TCAATAATGTTTTTTCT-A--TACAAGT----CA-TA--ATTCAAG-ATAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATGT-AATAGGC-GT---TTTCCC-AAA-A-TTGA-AATG--CTTTGG-----AGGCAGT-CTA-TT--TTGACAATATTAGATAT---G-CGTCT-T-CGAAATTGA-TTGATTGACG-AAGATTTTGTTACTA----CAT-TTGG--TAAATTCATGTTCAGATATAC-AAATAGCA-TCCGGAATGAAAGA-T-T-TCTTGGTTAAATTTCAAGT-C-TA--CA-T-TT--GGTAACTGATATAATTTT-CTTGCGTT---TCG-AGTG-CT-TA-TTGGA-----AAACTTACTTTTGCATTTCT-----ATTGTCAAATAT-GT-CCATGGTAAA-TATATGTAGGTA-CTG-AGTAT-CTATCATGCGTT
gi|5 : TAATATAC-AAATA-G-AG-AA---T--------------ATATGATA-AGTGCGCACTGAA--T-TTTA---AAGTTG-ATAAATC-AAGTA-AAATCGTA--TTTTGACATTACATATAT--ATATAG-TTT-G-AACTG---CAG--AAAAAAT-TTTTGCAG-T-TTAA------CA-T--CTCA--TGACGTAA-G--TTA-CAT-GTCCCCAAAGTAAAG-TA-TT--TGTGT----CTATAAGAGA-AACTCATCTT-TTAA-AGT-AAACAATATGA-CAAACCAAACTTGTCTT-GC-ATTAGAATAC--TTTTTA-CA--AAT---AAGAGAAAAA-GT--GGTTAAGC--A---C----TTCT--TG-TTGTC-----CAC--ATAAACAA-TTAGGTGTG-TCAATAATGTTTTTTCT-A--TACAAGT----CA-TA--ATTCAAG-ATAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATGT-AATAGGC-GT---TTTCCC-AAA-A-TTGA-AATG--CTTTGGAGGCAGTGCAGTGCTATTT--TTGACAATATTAGATAT---G-CGTCT-T-CGAAATTGA-TTGATTGACG-AAGATTTTGTTACTA----CAT-TTGG--T-AAATCA-TTCC--ATTTAC-AAATGGCA-TCCGGAATGAAAGA-T-T-TCTTGT--AAATTTCAAGT-C-TA--CATT-TT--GGTAAT--ATATAATTTT-CTT-CATT---TCG-ATTG-CTGTA-TTGAAAACTTACTTTT---------GTCAT-A-CTATTGTCAAATAT-GT-CCA-TGTAAA-TATATGTAGGTA-CTGTAGTATACTATCAT
gi|6 : ATTTAA-ATACCAAATGCT-ATTAG---T--------------ATGTAATGCAG-AT--ACTATA--TATATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGATA-ATATAG-ATTTG-AACTG---CAG----AAATT-TTTTACAGTT-T-AA------TA-T--C--ATTTAATGCAA-GTTTT--CATGGTCCCCACAACAAAGTTATTT--TGTAT----CTATAATAGATAACTCTT-TT-CTAA-AGCAAAACAACTTGTCCAAACATAACATGTCTT-GCAATTAGAATA--TTTTTTACCA--AGT---AA-AG-AAAA-GTTCGG-TCGGC--A--TCT---TTCT--TGTTTTTC-----CACCAATAAACAA--TAGGTGTGTTCGATAATGTTTTTTCTAA--AACAAGC----CATTA--ATTTAAT-ACAC-ATTTATGCC--TAACGTT--TTTGTTTGGTTGA-ATAATATTTAAACTGGC-G----TTTTCC-AAA-ATTTGAGAATG--CTTT-G-----GAGCA-TGCTATTG--TTGACAATATTAGATATTACG-CTCTT-T-CTAATTTGAGCTGATTGACG-AAGA-TTTGTTATCT----CAT-TTGGGTTAAAAGCA-TTCC--ATTTAC-AGATGACATTCTGGAATGAAAGA-----TCTTA---AAAATTC-GGT-C-TA--CA-T-TTTCAGTATT--ATATAATTTT-CTT-CATTTCGTCG-AGTGCCTGTAGTTGAA-----ACATTT---------TTCCT-ATA-ATTG---ACTATAGTATCACCATAAAGTAT
gi|7 : taTTTCTAAGTTAAGCC-AAGTCTT--TAT---TCGCATTATTTAC--AATGTT-ATTAG-CATACATA-----GTGACCAGCTTAAATTAAT--TCATTCGTAAAAG--TAAGACCAAGGTGCTTTGT--GAACAGTAAAAT-AT-G-CAGGCTGACATTGTTGAAACATTACTT----TTTTTTTTTTTGGTCATGGT------AAAAGTATTGATTTTGTTTTATTC-AAATTAATTTGAAAATTAATTTATTTCAAAT---TA-ATCACAAGAAGTTTGGACCA-CTCATCTAAG-ATTAT-TA-GATCATGATT-ATTT-T-A----AC---ATGTTGTTTA-ATCACTGCAACATTATACGACG-ATCTTTGAA-TAGA----ATT-GTCAT-CTGCAAATAATCTA----CACATTGACAACA--TAC--TGTCTGATACAACGTA-AATATA-----GATTTTAAAAAT-GC-AGAGGTCTC-AGGACTGAGCCT-TGGGGAACACCAACAGTATG-CT-T-C-------------C--GGTTGAAGAAAT-AGAAATGTATATATA-TA-------TAC-GTC--A--CTAT--ATATAT-TTGTTCTCTA-TTA--TTTAAATA-ATTTGT-A-AA-CTTA---TGGG-CT--TAGTTTGA--AAAAAAGGCCTTTA--TTTCA----CACTTTGTCGAAGG-C-TTATAGAAGG-GTCAC---AA-AA-----------------------ATC-C-ATACGAAATAATCTTCCCTCAT
gi|8 : A---T--------------ATG-AATA-GGTCC--ACTA-A--T-TATA---AAGTTGGATACATC-AAGTATAA-TC-TAAATTT-GACAT-----ACATT-ATGTAAATTTTG-AACTGATGCAG--AAAAA-C-TTTTGCAA-TGT-AA------CA-CAAC--A--TAACATAG-GG-TT--TAT--TTCCCAAATAGAAG-TA-CTAGTGTAT----CTATAG--AATAATTC---GTGTTAATAGC-AA-CAATTTGT-CAAACAAAACGTGTCTTGGC-ATTA-AATACTTTTTTTA-C---AAT---AA-AG---AA-GT--GA-TTAGCATA--TC----TTCT--GG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG--CAATAATGGTTTTTCT-AATAACAAATAGAATA-TA--ATTTAGGAACAC-AAGT---TC--T--CA-CTTTTTG--TGT-TGG-ATAATATTT-AA-AGAT-ATGACTTATCC-AAA-A-TTGA-AATG--CTTT-G-----GAGCAGTGCT-TTT--TTGACAA-ATTAGATAT---G-CTTCTCT-CGAATGTGA-CTGATTGACA-AAGA--TTGTTAACT----TGTGTTTG--TGAAACTCGTTCC--ATTTACTAAAT-GTA-TCCAGAAGTAAAGA-T-TCTCTTG---TAATTTCGAGT-CTTA--CA-T-ta
gi|9 : atatacaatagaaaatagtataataaagactAG-----------T--AACGCCCATGTA--------TT-AGACCAGTTTTTTTAATCATATC-AA-GGTCATTTGT-AAGTTA-A----AGAGAATG--GTTTACA--ATACCA---TTATCAA-TG-ATAGC-AAA-T-AAGGAGAT--GTAAT-CAGCAAATAATCGAATTTTATTAGGA----A--TAT--CATTGGTGACGTCATT-GATATA-----AA--GTAAGGACAAG-AATAGAC-CTAGTACTGACCCC-TGAGGTACCCCATCATTA-A-TTATACAGTAATATTTTCTT--TGTAG-----AT-GTAAAACCTTCTACAGTTA-CTCTTTGCTGTT-TC--TGAG--TTA-AG-TAGTTTTAAT-CCAGCTT--AATATATTACCTA-CA-AAACCCA-ACC-TCTGAAGTTTAT--GAACAAAA--CTTAAGTGCCA----AACTCGGTTAAACG-C-TT-T-GGGAA-AT------AATAA-----------------------AACGA-ATAT--C----TTTCCCTTTATCAAGACTTTGAATTATTTT-------AT---TA-CACATTT-CTACCAGCTGGT-ggt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTAACAGTAATTTCTATTTCAGCAACGCTATTTGATGAATATTGGAAAGAATTATCAACTGCAAAAAGTCTGCACATAGACAGCATTTTGTCTGAAAC
Alignments
lowQualScore : 1 11111111111111 11 1 22222 11 1 11 11 11 33333 222 1 1 11111111111 11111 111 11 111111 111 11111 11 222 11 1 11111 444444444 33333 11 1 11 11 111 1 1 1 1 1 1 1 1 1 11 11 1 1 11 2222 11 1 1 1 11 1 11 11 1 1 22222222 11111111 22222 22222222 1 1111 11 33333333333333 111 33333333 1 11 5555555555555 1111 222222 1111 11 22222 111 1 2222 11 111 1 333333333 1 222 1 5555555555555555555555555 22222 1 1 22222 1 11111 11 11 222222222 11 11111 1 111 55555555555555555555555 1 1 555555555555 1 1 1
lowQualScore : 0 3 333 6 555 88888888888888 6 22 2 44 3 555 8 3 3 0 3 9 9 44 9 33333 11 3 66 555 44 999 6 3 0 999999 3 44 33 44 3 55 55 4 4 4 3 55 7777 4 4 22222 4 4 4 1 2 4 4 2 555 4 55 777 2 3 4 55 2 77777777777 66 4 11111 66 4 4 2 4 111 9999 4 66 55 4 2 66 66 0 66 66 00 4 0 4 0 4 9999 8 4 4 5 66 8 222222 2 5 77 000 5 1 5 5 0 5 5 3 11111 5 66 2 44 6 22 4 3 4 88888 000 6 66 4 66 999 66 0 33 5 0 888 5 5 6 5 7 44444 555555555 00000 88 1 3 6 33 6 0 0 8 44 999 2 5 5 5 5 5 5 1 1 5 5 5 1 7 3 7 44 6 7 88 7 1 3 7 3 1 0 88 2222 88 3 3 7 88 3 3 2 3 33 0 33 33 0 0 2 44444444 8 1 77777777 88888 22222222 0 6 8 0 88 1 1111 0 7777 0 22 5 11111111111111 111 6 00000000 1 3 6 1 44 8 8 1111111111111 3 3 4444 999999 3 2222 44 88888 000 0 1 1111 1 22 7 0 33 888 22 22 0 000000000 3 0 666 1 9 0 0 1 0 1 0 6666666666666666666666666 55555 0 0 0 55555 0 55555 11 8 88 8 1 11 66 1 5 111111111 1 77 6 99 1 0 33 33333 0 5 5 5 1 1 5 0 000 5 22222222222222222222222 5 5 6 333 1 3 2 0 2 1 444444444444 0 0 0 2 3
lowQualScore : . . ... . ... .............. . .. . .. . ... . . . . . . . .. . ..... .. . .. ... .. ... . . . ...... . .. .. .. . .. .. . . . . .. .... . . ..... . . . . . . . . ... . .. ... . . . .. . ........... .. . ..... .. . . . . ... .... . .. .. . . .. .. . .. .. .. . . . . . .... . . . . .. . ...... . . .. ... . . . . . . . . ..... . .. . .. . .. . . . ..... ... . .. . .. ... .. . .. . . ... . . . . . ..... ......... ..... .. . . . .. . . . . .. ... . . . . . . . . . . . . . . . . .. . . .. . . . . . . . .. .... .. . . . .. . . . . .. . .. .. . . . ........ . . ........ ..... ........ . . . . .. . .... . .... . .. . .............. ... . ........ . . . . .. . . ............. . . .... ...... . .... .. ..... ... . . .... . .. . . .. ... .. .. . ......... . . ... . . . . . . . . ......................... ..... . . . ..... . ..... .. . .. . . .. .. . . ......... . .. . .. . . .. ..... . . . . . . . . ... . ....................... . . . ... . . . . . . ............ . . . . .
lowQualScore : 0 3 777 7 444 11111111111111 2 77 8 22 1 444 2 1 1 2 1 2 2 22 2 11111 22 3 66 888 66 000 7 3 0 666666 3 66 88 66 3 88 99 0 0 0 6 00 7777 2 4 33333 0 0 0 0 7 0 0 5 333 0 55 000 0 2 0 55 0 22222222222 11 4 11111 11 4 4 7 4 444 4444 4 11 66 0 2 11 11 1 11 11 66 4 7 4 9 4 7777 9 4 4 0 99 8 888888 5 0 99 000 7 3 7 7 7 0 0 2 66666 0 99 0 66 2 22 4 7 4 88888 000 4 11 4 11 888 99 8 88 0 0 888 7 7 6 7 9 33333 777777777 33333 00 0 3 7 00 7 8 8 0 00 222 5 0 5 5 5 5 0 0 0 0 0 5 0 3 7 3 00 7 3 33 3 0 3 3 2 0 0 33 7777 33 3 3 3 33 3 2 5 2 88 0 88 88 0 0 5 22222222 0 0 00000000 44444 44444444 8 0 0 8 88 0 0000 8 4444 8 66 6 88888888888888 777 7 88888888 0 3 7 0 44 0 0 0000000000000 2 2 8888 555555 2 0000 22 55555 888 0 0 2222 0 55 0 2 88 000 22 22 0 888888888 2 0 222 0 2 8 0 0 2 2 2 5555555555555555555555555 00000 0 2 0 88888 6 66666 00 8 88 0 0 00 00 4 0 333333333 0 22 7 22 0 7 66 11111 3 7 7 7 4 0 7 4 000 7 99999999999999999999999 7 7 4 666 0 8 8 8 8 0 888888888888 0 0 8 5 3
consensus : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AAGTTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAN-TTTTGCAG-T-T-AA------TA-T--C--A--TAACGCAA-G--TT--CA-T-GTCCCCAAAGCAAAG-TA-TT--TGT----GTCTATAATAGATAACTC--CTTCTAA-AGC-AAACAATTTGT-CAAACANAACATGTCTT-GC-ATTAGAATAC-TTTTTTA-CA--AAT---AA-AGAAAAA-GT--GG-TAGGC--A--TC----TTCT--TG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG-TCGATAATGTTTTTTCT-A--NACAAGT----CA-TA--ATTTAAG-ACAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATTT-AACAGGC-GT---TTTTCC-AAA-A-TTGA-AATG--CTTTGG-----GAGCAGTGCTATTT--TTGACAATATTAGATAT---G-CTTCT-T-CGAAATTGA-CTGATTGACG-AAGATTTTGTTACCN----CAT-TTGG--TAAAANCATTTCC--ATTTAC-AAATGGCA-TCCGGAATGAAAGA-T-T-TCTTG---AAATTTCGAG--TC-TA--CA-T-TT--GGTAAT--ATATAATTTT-CTT-CATT---TCG-AGTG-CTGTA-TTGGA-----ACATTT---------TTCCT-A-A-ATTGTCAANTAT-GT-CCACCGTAAA-TATATGTAGGTA-CTG-AGTAT-CTATCATGCGTTTTCATACATTGTGATTTAATTTCGCTTTTCTTCTCCTATTCGTTCAAANGNTCCCAACCCGTTTCAAGAGTATAANGATTCCTTTGATGCCAAAATAGACAAACCGGTTACCAATTCTTGCAGCATGTAGCTGAACTTT--TTCTAATTTTTNCAA-ATCTGAAATTGNACA-TCCATCCCATACCACAGAAGCATA--TTCT-A--ATATTGGTCTT--ACAAAC-GT-ATATACATTTTTGACAGTTTATCTCTACANAGAGTAAA-TTTGAGTTTTCTTAATCAATCCTAACTTTT--TA-TAA--GCATGATTTAC--AATGTT-ATCAA-CGTACACA-----G--ACCA-TTTNAA---AT--TCATCTGAAAAAG--CGAGACCAAGATGCTTAAT--G--CGATGAAAC-AT-TTCTAATTGACAACCTTGAAAAAGCAGTTGAGGTATTTGGTTATGTNC-TGATTTACCAAAAAATAAAACCTTGGTTTTATTC-GGATTAAATTGAAG-----------T--AAC---CA-GTC--------TTCAGACCA-TTTTTCTAAT-ATTTC-GA-GATCATGATT-AAGT-A-A----ATTCTATGTTGTTTA-A--ATT-C--CATTATCCG-CG-ATATC-GAA-TA--GAATT-GTCAT-CAGCANATAACCGA----CANAAAGATAACA--TAT--CGTNAGNAACATCGTT-GACATA-----NA--TCAAAAACAAC-AATGGAC-C-AGNACTGAACCT-TGNGGCACTCCAGCATTA-A-TT-T-CA--AA--------C--TGTTG-----AT-ACAAATCTTTATACA-TAA-CT-TTTGCTGTC-TA--TGAT--ATANAA-TAGTTT-TAAACCA--TTGAAAAAGATTTCC-A-CG-CATNCCGTACG-TTTGTAATTTGA--AAANAAGACCCTCA--TGCCA----NACTCTGTCAAATG-C-TT-T-GANAG-ATCGC---AA-AA-----------------------AAC-C-ATACGACACGATTTNCCNTCATCGATATTTTGAACGATNTT-------A----TG-TATATTT-TAATAAGCTGGT-AACCGTAA
Reference ( family-339 ) : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AAGTTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAN-TTTTGCAG-T-T-AA------TA-T--C--A--TAACGCAA-G--TT--CA-T-GTCCCCAAAGCAAAG-TA-TT--TGT----GTCTATAATAGATAACTC--TTTCTAA-AGC-AAACAATTTGT-CAAACANAACATGTCTT-GC-ATTAGAATAC-TTTTTTA-CA--AAT---AA-AGAAAAA-GT--GG-TAGGC--A--TC----TTCT--TG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG-TCGATAATGTTTTTTCT-A--NACAAGT----CA-TA--ATTTAAG-ACAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATTT-AACAGGC-GT---TTTTCC-AAA-A-TTGA-AATG--CTTTGG-----GAGCAGTGCTATTT--TTGACAATATTAGATAT---G-CTTCT-T-CGAAATTGA-CTGATTGACG-AAGATTTTGTTACCN----CAT-TTGG--TAAAANCATTTCC--ATTTAC-AAATGGCA-TCCGGAATGAAAGA-T-T-TCTTG---AAATTTCGAG--TC-TA--CA-T-TT--GGTAAT--ATATAATTTT-CTT-CATT---TCG-AGTG-CTGTA-TTGGA-----ACATTT---------TTCCT-A-A-ATTGTCAANTAT-GT-CCACCGTAAA-TATATGTAGGTA-CTG-AGTAT-CTATCATGCGTTTTCATACATTGTGATTTAATTTCGCTTTTCTTCTCCTATTCGTTCAAANGNTCCCAACCCGTTTCAAGAGTATAANGATTCCTTTGATGCCAAAATAGACAAACCGGTTACCAATTCTTGCAGCATGTAGCTGAACTTT--TTCTAATTTTTNCAA-ATCTGAAATTGNACA-TCCATCCCATACCACAGAAGCATA--TTCT-A--ATATTGGTCTT--ACAAAC-GT-ATATACATTTTTGACAGTTTATCTCTACANAGAGTAAA-TTTGAGTTTTCTTAATCAATCCTAACTTTT--TA-TAA--GCATGATTTAC--AATGTT-ATCAA-CGTACACA-----G--ACCA-TTTNAA---AT--TCATCTGAAAAAG--CGAGACCAAGATGCTTAAT--G--CGATGAAAC-AT-TTCTAATTGACAACCTTGAAAAAGCAGTTGAGGTATTTGGTTATGTNC-TGATTTACCAAAAAATAAAACCTTGGTTTTATTC-GGATTAAATTGAAG-----------T--AAC---CA-GTC--------TTCAGACCA-TTTTTCTAAT-ATTTC-GA-GATCATGATT-AAGT-A-A----ATTCTATGTTGTTTA-A--ATT-C--CATTATCCG-CG-ATATC-GAA-T---GAATT-GTCAT-CAGCANATAACCGA----CANAAAGATAACA--TAT--CGTNAGNAACATCGTT-GACATA-----NA--TCAAAAACAAC-AATGGAC-C-AGNACTGAACCT-TGNGGCACTCCAGCATTA-A-TT-T-CA--AA--------C--TGTTG-----AT-ACAAATCTTTATACA-TAA-CT-TTTGCTGTC-TA--TGAT--ATANAA-TAGTTT-TNAACCA--TTGAAAAAGATTTCC-A-CG-CATNCCGTACG-TTTGTAATTTGA--AAANAAGACCCTCA--TGCCA----NACTCTGTCAAATG-C-TT-T-GANAG-ATCGC---AA-AA-----------------------AAC-C-ATACGACACGATTTNCCNTCATCGATATTTTGAACGATNTT-------A----TG-TATATTT-TAATAAGCTGGT-AACCGTAA
gi|1 : ATATAA-ATAC-AAATG-T-ATCAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAAATTTTACAG-T-T-AA------TA-T--C--A--TAATGCAA-G--TT--CA-T-GTCCCCAAAGCAAAG-TA-TT--C-T----ATCTAAAATAGATAATTC--TT-CTAA-AGC-AAACAATTTGT-CAAACATAATATGTCTT-GC-ATTAGAATAT-TTTTTTA-CA--AGT---AA-AGAAAA--GT--GG-TAGGC--A--TC----TTCT--TG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG-TCGATAATGTTTTTTCT-A--AACAAGT----CA-TA--ATTTAAT-ACAC-AATATTGCC--T--CAGC--TTTG--TT--TG--ATAATATTT-AACTGGC-GT---TTTTCCAAAA-A-TTGA-AATG--CGTTGG-----GAGCAGTGCTATTT--TTGAAAATATTA-ATAT---G-CTTCT-T-CTAAATTGA-CTGATTGACGCAAGATTCTGTTACCT----CAT-TTGG--TAAAAGCATTTCC--ATTTAC-AGATGACA-TCTGGAATGAAAGA-T-T-TCTTA---AAAATTCGGT--TC-TA--CA---TT--GGTATT--ATATAATTTT-CTT-CATT---T-G-AGTG-CTGTA-TT-GA-----ACATTT---------TTCCTAA-A-ATTG--AACTAT-TT-ATACCATAAA-TAT---TGGGCA-CTG--GT----TATGATGCATTTT-AT-CA-TGTGA-TTAATTTCGCTTTTCTTCTCCT-TTCGTTCAAAGGTTCCCAACCCGTTTCAAAAGTATAAAGATTCTTTTGATGCCAAAATAGACAAACCGGTTACC-ATTCTTGCAG-ATGTAGCTGAACTTT--TTCTAATTTTTCCAA-ATCTGAAATTGCACA-TCCATCCCATACCACAGAAGCATA--TTCTGA--ATATTGGTCTT--ACAAACTGT-ATATACATTTTTGACAGTTTATCTCTACAAAGAGTAAA-TTTGAGCTTTCTTAATCAATCCTAACTTTTTATA-TAA--GCATGATTTAC--AATATT-ATCAA-TGTACACA-----G--ACCA-TTTCAA---AA--TCATCTGAAAAAA--TACAACCAAGATGCTT-AT--G--CGATGAAAC-AT-TTCTAATTGACAACCTTGAAAAAGCAGTTGAGGTATTTGGTTATGTGC-TGATTTACCAAAAAATAAAACCTTGG-TTTATTT-GGATTAAATTGAAG-----------T--AAC---CA-GTC--------TTCAGATCA-TTTTTCTAAT-ATTTC-TATGATCATGATT-AAGT-ACAC---ATTCTATGTTGTTTA-A--ATT-T--C-TTATCCG-CA-ATATT-GAA-T---GAATTGGTCAT-CAGCATATAACCGA----CAAAAAGATAACA--TAT--TATGAGGAACATCATT-GACATA-----TA--TCAAAAACAAC-AATGGAC-A-AGTAC-GAACCT-TGTGGCACTCCAGCATTA-A-TT-T-CA--AA--------C--TGTTG-----ATAACAAATCTTTATACA-TAACCT-TTTGCTGTC-TA--TTAT--ATAGAA-TAGCTT-TTAACCA--TTGAAAAAGATTTCC-ACCG-CATTCCGTACG-TTTGTAATTTGA--AAAGAAGACCCTCA--TGCCA----GACTCTGTCAAATG-C-CT-T-GACAG-ATCGC---AA-AA-----------------------AAC-C-ATACAACATGATTTTCCATCATC-ATATTTTTAACAATGCT-------A----TGATATGTTT-TAATAAGTTGGTAAACTGTAA
gi|10 : CTGA-ATGC-AATTG-T-ATTGA---TTAACGATAGTGGATATGTAATAGATTAC--ACT-TAAGT-TATA---AAGCTG-ATCAATTCAAGTA-AA-TC-TA--ATT-GACA-----------------G-GTTT-GAACAG---CAGGAAAAAAAA-T---GCTG-T-T-TA------CA-T--T--T--TGACGT---G--TT--AA-T-GGTCTAAAAGTAAAG-TA-TT--TGT----GTATATAATAGATTCCTC--GT-CTAA-AGC-AAACAATTTGT-TAAATATGACATGTCTT-GC-ATTAGAATAA-ATTTT-A-CA--GAT---AA-AGAAAAA-GT--GG-TAGGC--A--TC----TT-----A-TTTTCACATACAT--GTAAATGC-TTTTGTGTG-T-GA--ATTTATTTTCT-A--TGTA--T----C-------TTTAAG-ATAC-AATTTTACC--T--CAGC--TTTG--CG--TGA-ATTATATCT-GACAGCC-GT---TTTT-C-AAA-A-TTGC-AATG--CTTT-G-----GAGCAGTGtga
gi|11 : TGAAATTGAACA-TCCATCCCATACTATTGAAGCATA--TTCT-A--ACATTGGTCTT--ACAAAA-GTTACATACATTTTTGAAAGTTTTTCTCTACATAGAATAAA-TTTAAGTTT-CTTAATCAGTCCTAACTTTT--TA-TAA--GCATGATTTAC--AATGGT-ATCAA-TGTACACA-----G--ACCA-TTTCAA---AT---CATCTGAAAAAAATC-AGACCAAGATGCTTAATATG--CGATGAAAC-AAATTCTAATCGACAACCTTGAAAAAGCAATTGAGGTATTTGGTTGTGTGC-TGATTTCCCAAAAAATAAAACCTTGGTTTTATTT-GGATTAAGTTGAAG-----------T--AAC---TA-GTC--------CTCAGACCA-TTTTTCCAAT-ATT
gi|12 : ATTTAA-ATAC-AAATG-T-ATAAA---T--------------A-GTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-ATTT-GAACTG---CAG--AAAAAAA-ATT-ACAG-T-T-AA------TAAT--C--A--TAATGCAA-G--TTTTCA-T-GTCCCCAAAGCAAAG-TA-TT--TGT----ATCTATAATAGATAACTC--TT-CTAA-AGC-AAACATATTGT-CAAACAAAA--TGTCTT-GC-ATTAGA------TTTTTA-CA--AGT---AA-AGAAAAA-A---GG-TAGGC--A--TC----TTCT--TG-TTTTC-----CA---ATAAACAATTTAGGTGTG-TCGATAATGTTTTTTCT-A--AACAAGT----CA-TA--ATTTAAT-ACAC-ct
gi|13 : ATCTAA-ATAC-AAATG-TCATTGAATAT--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGATTAATATAG-TTTTGGAACTG---CAG--AAATA---TTTTACAGTT-T-AA------TA-T--C--A--TAATGCAACGT-TT--CATT-GTCCCCAAAGCAAAG-TA-TT--TGTATAGATCTATGATAGATAACTC---TTCTAA-AGC-AAACAATTTAT-CAAACATAACATttt
gi|14 : T-TTTGC-GTCCTA--TGATCGATATAAATAACCTATAAACCA--CTGTAGAAGATTACC-A-GA-TATATCATACG-TTTGTAATTTAA--ATATGAGAGCACTA--TGCCA----CACTTTGTCAAATG-CTTT-T-GATAG-ATCAC---AA-AA-----------------------GGC-C-ATAAAGCACGATTTACCGTCATCGATGTTTTGGACGATGTTAAGGTACA----TG-TATATTT-TAAGAAGCTGtgaattttatttaaggtctctacacataatacaaacaaat
gi|15 : cagatccttacgA-----A--ACCA-TNNNNN---NNNNTTATTAGAAAAGG--TGAGACCAAGATGTTT-----G--TAA-GAAATTAT-TTCTAATTGACAATTTTTAACATGCAGTCA----------TTATGACT-TGCCTTGTAAAAGAATAAAACCATAGTTTTATTA-AGATTAAATTTCAA-----------T--ATC---CA-TTC--------TTCA-------------AGT-ATTTT-GA-GATCGTGATT-Atat
gi|16 : tgatttgccttgtaaaagaataATATAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAA-TTTT-GAACTG---CAG--AATTTTT-TTTTACAG-T-T-AATACATGTA-T--C--A--TAATGCAA-GTTTT--CA-T-GTCCAC-AAGCAAAG-TA-TT--TGT----ATCTATAATAGATAA
gi|17 : -CATACGGTGTG-TTTATAATTTGA--AAATGAGGCTCCCA--AGCCA----TACTCTATCAAAAT-C-TT-TGGAAAA-ATCAC---AA-AAATAAATAAATAGTGGTAAATAAAAAT-CCACACGACACAATTTAC---TATCCACATTTTGAAC-ATTTG-------AACTTTG-TATATTTGTAATAA-TTGAT-AACCGTAA
gi|18 : ATCTAA-ATAC-AAATG-T-ATTGA---T--------------ATATAATA-AGTAT--ACTAAA--T-TATATATAAATTG-ATAAATT-A-TTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAA-ATTGGCAG-T-T-AA------TA-T--C--A--TAACGCAA-G--Taatga
gi|19 : taAAATTGA-CTGATTGACA-AATATTTGAATATAT----CAT-TGGG----AAAACATTCCG--TTTTGC-AAATGTCA-TCTGGAA---------------CG---AAATTTCGAG--TA-TA--CATT-TT--GATGAT--ATGCGATTTT-TTA-AAAT---TTGTAGTG-CTATA-TT-GA-----ACATTT---------Tagattggtaatcccagcagcacacattttg
gi|2 : taa-GT-ATTA--ACAT-TTTTTTA-CATGACTGTAAA-AGAAAAACGT--GG-AAGGCC-AGTTCACTGTTCTATCG-TTTCC-----CAC--ATAAACAA-TTAGGTGTG-TC-ATCATGTTTTTTCT-A---ACAGTT----CA-TGTCATTTAAT-ACACGAATTAAGCCCGT--AAGT--TTTG--TT--TGAGATAATATTT-AACTGGCCGT---TTTTCCCAAACA-TTGA-AATTTTCTTTGG------AGC-GTGCTATTGAGTTGACAATATTAGATAT---GTCTTCT-TGCTAAATTGA-CTGAT-GACG-A-GATTTTGTTACCGAATTCAT-TTGG--TAAA-GCATT-CC--ATTTAC-AGATG--A-TCTGGAATGAAAGAATAT-TCTTT---AAATTTCG-GCTTC-TAACCT-T-TT--GGTATC--ATATACTTTTTCTT-CATT---TCG--GTG-CTGTC-TTTGA-----ACATTT---------TCCCT-A-A-ACTG---ACTATAGT-TCAC-ATAAA----ATG-AGGCAACTG-TGT----TATGATG-ATTTTCATACATTGTGATTTAATTTCGCTTTTCTTCTCCTATTCGTT-AAATGGTCCCAA-CTGTTT-AAGAGTAT-ATGATTTCTTTGATGTCATAATAGAT-AACCTGT--CCAATTCTTGCAGCATGTAGC-GAACTTTAGTTCTAATTTTTACAA-A-CTG-AATTGGAAACTCCATCCCATACCACAGAAGCATAATCTCT-ACCATATTGGTCTTTAACAAAC-GT-ATATACA-TTTTGACAGTTTATCTCTACAC-GAGTAAACTTTGAGTTTTTATAATCAAT-CTAACTTTT--TACTAAAGGCAGGATTTACAAAATATTAATCAATCGTA-ACAGACAGG--ACCA-TTTAAA---AT--TCATCTGAAAAAT--C-AAACCAAGATGCTTAAT--G--CGATGAAACAAT-TTCTAAATTACAACCTGAAAAAAGCAGTTGAGGTATTTGGTTATGT-C-TGATTTACC-AAAAATAAAACCTTGTTTTGATTTGGGATTAAATTG--G-----------T--AAC---CA-ATCT-------TTCAGACCATTTTTTCTAAT-ATTGCTAA-AAGCATGATTAAAGT-A-GGCACATTCTA-GTTGTTTA-A--ATT-C----TTA-CCG-CATATATG-GAATT---GAA-T-GTCATCCAGCATATTACCGA----CAAAGAGATAATAGTTATGAAGTGAGCAACATCGTTGGACATGAGTGTTA--TCAAAAACAACAAATGGAC-CAAGGACGGAACCTATGTGGCACTCCAGCATTA-ATTT-T-CA--AA--------CTGTGTTG-----AT-ACAAATCTTTATACA-TAA--T-TTTGCTGTC-TAATTGAT--ATAGAA--AGTTT-TAAACCA--TTGAAAAAGATTT-C-A-CGTCATCGCGATCGTTTTGTAATTTGAAGAAAGAAGACCCTCAT-TGCCAGAACGACTCTGTCAAATGCC-TT-T-GACAGAATCGCCATAA-AA-----------------------AA--C-ATACcttattg
gi|20 : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAG---TTACAG-T-T-AA------TA-T--C--A--TAATGCAA-G--TT--atattgactttt
gi|22 : aGATGCCAAAATAGACAAACCAGTTAC-AATTGTTGCAGCGTGTAATTGAATTTT--TTCTA-TTTTTTTAATATCTGAAATTGCACA-TCCAt
gi|23 : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-CATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AG
gi|24 : taTTC--ATTTTT-GAACGACA-TCTGGAATGAATGA-T-T-----------ATTTTGTG--TT-TA--CA-TGTT--AGAAAT--ATATAGTTGT-CTT-CATT---
gi|25 : T-CAAACATAACATGTCTT-GC-ATTATAATAA--GTTTTA-CG--AAT---AA-AGCAACT-GT--GA-TAAGC--A--
gi|26 : GACCCTCA--TGCCA----GACTCTGTCAAATG-C-TT-T-GACAG-ATCGC---AA-AA-----------------------AAC-C-ATAc
gi|27 : C-AATTATGCC--T--CAAC--TTTG--CG--TAA-ATAATATTT-AACAAGC-G----TTTTCC-AAA-A-aa
gi|28 : -TT--TGT----GTCTATAAGAGATAACTC---ATCTAA-AGC-AAACAA
gi|3 : TAATATAC-AAATA-G-AG-AA---T--------------ATATGATA-AGTGCGCACTGAA--T-TTTA---AAGTTG-ATAAATC-AAGTA-AAATCGTA--TTTTGACATTACATATAT--ATATAG-TTT--GAACTG---CAG--AAAAAAT-TTTTGCAG-T-TTAA------CA-T--CTCA--TGACGTAA-G--TTA-CA-T-GTCCCCAAAGTAAAG-TA-TT--TGT----GTCTATAAGAGA-AACTCATCTTTTAA-AGT-AAACAATATGA-CAAACCAAACTTGTCTT-GC-ATTAGAATAC--TTTTTA-CA--AAT---AAGAGAAAAA-GT--GGTTAAGC--A---C----TTCT--TG-TTGTC-----CAC--ATAAACAA-TTAGGTGTG-TCAATAATGTTTTTTCT-A--TACAAGT----CA-TA--ATTCAAG-ATAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATGT-AATAGGC-GT---TTTCCC-AAA-A-TTGA-AATG--CTTTGG-----AGGCAGT-CTA-TT--TTGACAATATTAGATAT---G-CGTCT-T-CGAAATTGA-TTGATTGACG-AAGATTTTGTTACTA----CAT-TTGG--TAAATTCATGTTCAGATATAC-AAATAGCA-TCCGGAATGAAAGA-T-T-TCTTGGTTAAATTTCAAG--TC-TA--CA-T-TT--GGTAACTGATATAATTTT-CTTGCGTT---TCG-AGTG-CT-TA-TTGGA-----AAACTTACTTTTGCATTTCT-----ATTGTCAAATAT-GT-CCATGGTAAA-TATATGTAGGTA-CTG-AGTAT-CTATCATGCGTTca
gi|4 : TAATATAC-AAATA-G-AG-AA---T--------------ATATGATA-AGTGCGCACTGAA--T-TTTA---AAGTTG-ATAAATC-AAGTA-AAATCGTA--TTTTGACATTACATATAT--ATATAG-TTT--GAACTG---CAG--AAAAAAT-TTTTGCAG-T-TTAA------CA-T--CTCA--TGACGTAA-G--TTA-CA-T-GTCCCCAAAGTAAAG-TA-TT--TGT----GTCTATAAGAGA-AACTCATCTTTTAA-AGT-AAACAATATGA-CAAACCAAACTTGTCTT-GC-ATTAGAATAC--TTTTTA-CA--AAT---AAGAGAAAAA-GT--GGTTAAGC--A---C----TTCT--TG-TTGTC-----CAC--ATAAACAA-TTAGGTGTG-TCAATAATGTTTTTTCT-A--TACAAGT----CA-TA--ATTCAAG-ATAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATGT-AATAGGC-GT---TTTCCC-AAA-A-TTGA-AATG--CTTTGG-----AGGCAGT-CTA-TT--TTGACAATATTAGATAT---G-CGTCT-T-CGAAATTGA-TTGATTGACG-AAGATTTTGTTACTA----CAT-TTGG--TAAATTCATGTTCAGATATAC-AAATAGCA-TCCGGAATGAAAGA-T-T-TCTTGGTTAAATTTCAAG--TC-TA--CA-T-TT--GGTAACTGATATAATTTT-CTTGCGTT---TCG-AGTG-CT-TA-TTGGA-----AAACTTACTTTTGCATTTCT-----ATTGTCAAATAT-GT-CCATGGTAAA-TATATGTAGGTA-CTG-AGTAT-CTATCATGCGTT
gi|5 : TAATATAC-AAATA-G-AG-AA---T--------------ATATGATA-AGTGCGCACTGAA--T-TTTA---AAGTTG-ATAAATC-AAGTA-AAATCGTA--TTTTGACATTACATATAT--ATATAG-TTT--GAACTG---CAG--AAAAAAT-TTTTGCAG-T-TTAA------CA-T--CTCA--TGACGTAA-G--TTA-CA-T-GTCCCCAAAGTAAAG-TA-TT--TGT----GTCTATAAGAGA-AACTCATCTTTTAA-AGT-AAACAATATGA-CAAACCAAACTTGTCTT-GC-ATTAGAATAC--TTTTTA-CA--AAT---AAGAGAAAAA-GT--GGTTAAGC--A---C----TTCT--TG-TTGTC-----CAC--ATAAACAA-TTAGGTGTG-TCAATAATGTTTTTTCT-A--TACAAGT----CA-TA--ATTCAAG-ATAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATGT-AATAGGC-GT---TTTCCC-AAA-A-TTGA-AATG--CTTTGGAGGCAGTGCAGTGCTATTT--TTGACAATATTAGATAT---G-CGTCT-T-CGAAATTGA-TTGATTGACG-AAGATTTTGTTACTA----CAT-TTGG--T-AAATCA-TTCC--ATTTAC-AAATGGCA-TCCGGAATGAAAGA-T-T-TCTTGT--AAATTTCAAG--TC-TA--CATT-TT--GGTAAT--ATATAATTTT-CTT-CATT---TCG-ATTG-CTGTA-TTGAAAACTTACTTTT---------GTCAT-A-CTATTGTCAAATAT-GT-CCA-TGTAAA-TATATGTAGGTA-CTGTAGTATACTATCAT
gi|6 : ATTTAA-ATACCAAATGCT-ATTAG---T--------------ATGTAATGCAG-AT--ACTATA--TATATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGATA-ATATAG-ATTT-GAACTG---CAG----AAATT-TTTTACAGTT-T-AA------TA-T--C--ATTTAATGCAA-GTTTT--CA-TGGTCCCCACAACAAAGTTATTT--TGT----ATCTATAATAGATAACTCT-TTTCTAA-AGCAAAACAACTTGTCCAAACATAACATGTCTT-GCAATTAGAATA--TTTTTTACCA--AGT---AA-AG-AAAA-GTTCGG-TCGGC--A--TCT---TTCT--TGTTTTTC-----CACCAATAAACAA--TAGGTGTGTTCGATAATGTTTTTTCTAA--AACAAGC----CATTA--ATTTAAT-ACAC-ATTTATGCC--TAACGTT--TTTGTTTGGTTGA-ATAATATTTAAACTGGC-G----TTTTCC-AAA-ATTTGAGAATG--CTTT-G-----GAGCA-TGCTATTG--TTGACAATATTAGATATTACG-CTCTT-T-CTAATTTGAGCTGATTGACG-AAGA-TTTGTTATCT----CAT-TTGGGTTAAAAGCA-TTCC--ATTTAC-AGATGACATTCTGGAATGAAAGA-----TCTTA---AAAATTCG-G--TC-TA--CA-T-TTTCAGTATT--ATATAATTTT-CTT-CATTTCGTCG-AGTGCCTGTAGTTGAA-----ACATTT---------TTCCT-ATA-ATTG---ACTATAGTATCACCATAAAGTAT
gi|7 : taTTTCTAAGTTAAGCC-AAGTCTT--TA-TTC--GCATTATTTAC--AATGTT-ATTAG-CATACATA-----GTGACCAGCTTAAATTAAT--TCATTCGTAAAAG--TAAGACCAAGGTGCTTTGT--GAACAGTAAAAT-AT-G-CAGGCTGACATTGTTGAAACATTACTT----TTTTTTTTTTTGGTCATGGT------AAAAGTATTGATTTTGTTTTATTC-AAATTAATTTGAAAATTAATTTATTTCAAAT---TA-ATCACAAGAAGTTTGGACCA-CTCATCTAAG-ATTAT-TA-GATCATGATT-ATTT-T-A----AC---ATGTTGTTTA-ATCACTGCAACATTATACGACG-ATCTTTGAA-TA--GAATT-GTCAT-CTGCAAATAATCTA----CACATTGACAACA--TAC--TGTCTGATACAACGTA-AATATA-----GATTTTAAAAAT-GC-AGAGGTCTC-AGGACTGAGCCT-TGGGGAACACCAACAGTATG-CT-T-C-------------C--GGTTGAAGAAAT-AGAAATGTATATATA-TA-------TAC-GTC--A--CTAT--ATATAT-TTGTTC-TCTATTA--TTTAAATA-ATTT------G-TAAACT-TATG-GGCTTAGTTTGA--AAAAAAGGCCTTTA--TTTCA----CACTTTGTCGAAGG-C-TTATAGAAGG-GTCAC---AA-AA-----------------------ATC-C-ATACGAAATAATCTTCCCTCAT
gi|8 : A---T--------------ATG-AATA-GGTCC--ACTA-A--T-TATA---AAGTTGGATACATC-AAGTATAA-TC-TAAATTT-GACAT-----ACATT-ATGTAAATTTT-GAACTGATGCAG--AAAAA-C-TTTTGCAA-TGT-AA------CA-CAAC--A--TAACATAG-GG-TT--TA-T--TTCCCAAATAGAAG-TA-CTAGTGT----ATCTATAG--AATAATTC--GTGTTAATAGC-AA-CAATTTGT-CAAACAAAACGTGTCTTGGC-ATTA-AATACTTTTTTTA-C---AAT---AA-AG---AA-GT--GA-TTAGCATA--TC----TTCT--GG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG--CAATAATGGTTTTTCT-AATAACAAATAGAATA-TA--ATTTAGGAACAC-AAGT---TC--T--CA-CTTTTTG--TGT-TGG-ATAATATTT-AA-AGAT-ATGACTTATCC-AAA-A-TTGA-AATG--CTTT-G-----GAGCAGTGCT-TTT--TTGACAA-ATTAGATAT---G-CTTCTCT-CGAATGTGA-CTGATTGACA-AAGA--TTGTTAACT----TGTGTTTG--TGAAACTCGTTCC--ATTTACTAAAT-GTA-TCCAGAAGTAAAGA-T-TCTCTTG---TAATTTCGAG--TCTTA--CA-T-ta
gi|9 : atatacaatagaaaatagtataataaagactAG-----------T--AACGCCCATGTA--------TT-AGACCAGTTTTTTTAATCATATC-AA-GGTCATTTGT-AAGTTA-A----AGAGAATG--GTTTACA--ATA-C--CATTATCAA-TG-ATAGC-AAA-TAAGGAGAT-GTAAT-CAGCAAATAATCGAATTTTATTAGGA----A--TAT--CATTGGTGACGTCATT-GATATA-----AA--GTAAGGACAAG-AATAGAC-CTAGTACTGACCCC-TGAGGTACCCCATCATTA-A-TTATACAGTAATATTTTCTT--TGTAG-----AT-GTAAAACCTTCTACAGTTA-CTCTTTGCTGTT-TC--TGAG--TTA-AG-TAGTTT-TAATCCAGCTT--AATATATTACCTA-CA-AAACCCA-ACC-TCTGAAGTTTAT--GAACAAAA--CTTAAGTGCCA----AACTCGGTTAAACG-C-TT-T-GGGAA-AT------AATAA-----------------------AACGA-ATAT--C----TTTCCCTTTATCAAGACTTTGAATTATTTT-------AT---TA-CACATTT-CTACCAGCTGGT-ggt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTAACAGTAATTTCTATTTCAGCAACGCTATTTGATGAATATTGGAAAGAATTATCAACTGCAAAAAGTCTGCACATAGACAGCATTTTGTCTGAAAC
Alignments
lowQualScore : 1 11111111111111 11 1 22222 11 1 11 11 11 222222 222 1 1 11111111111 11111 111 11 111111 111 11111 11 222 11 1 11111 444444444 33333 11 1 11 11 111 1 1 1 1 1 1 1 1 1 11 11 1 1 11 2222 11 1 1 1 11 1 11 11 1 1 22222222 11111111 22222 22222222 1 11 1111 11 33333333333333 111 33333333 1 11 5555555555555 1111 222222 1111 11 222 111 1 2222 11 111 1 333333333 1 222 1 55555555555555555555555 22222 1 1 22222 1 11111 11 11 222222222 11 11111 555555555555555555555555555 1 1 555555555555 1 1 1
lowQualScore : 0 3 333 6 555 88888888888888 6 22 2 44 3 555 8 3 3 0 3 9 9 44 9 33333 11 3 66 555 44 999 6 3 0 999999 3 44 33 44 3 55 55 4 4 4 3 55 7777 4 4 888888 4 4 4 1 2 4 4 2 555 4 55 777 2 3 4 55 2 77777777777 66 4 11111 66 4 4 2 4 111 9999 4 66 55 4 2 66 66 0 66 66 00 4 0 4 0 4 9999 8 4 4 5 66 8 222222 2 5 77 000 5 1 5 5 0 5 5 3 11111 5 66 2 44 6 22 4 3 4 88888 000 6 66 4 66 999 66 0 33 5 0 888 5 5 6 5 7 44444 555555555 00000 88 1 3 6 33 6 0 0 8 44 999 2 5 5 5 5 5 5 1 1 5 5 5 1 7 3 7 44 6 7 88 7 1 3 7 3 1 0 88 2222 88 3 3 7 88 3 3 2 3 33 0 33 33 0 0 2 44444444 8 1 77777777 88888 22222222 0 6 8 0 00 1 1111 0 7777 0 22 5 11111111111111 111 6 00000000 1 3 6 1 44 8 8 1111111111111 3 3 4444 999999 3 2222 44 333 000 0 1 1111 1 22 7 0 33 888 22 22 0 000000000 3 0 666 1 9 0 0 1 0 1 0 66666666666666666666666 55555 0 0 0 55555 0 55555 11 8 88 8 1 11 66 1 5 111111111 1 77 6 99 1 0 33 33333 0 5 5 5 5 5 1 5 0 333333333333333333333333333 5 888 6 333 1 8 2 0 2 1 444444444444 0 0 0 2 3
lowQualScore : . . ... . ... .............. . .. . .. . ... . . . . . . . .. . ..... .. . .. ... .. ... . . . ...... . .. .. .. . .. .. . . . . .. .... . . ...... . . . . . . . . ... . .. ... . . . .. . ........... .. . ..... .. . . . . ... .... . .. .. . . .. .. . .. .. .. . . . . . .... . . . . .. . ...... . . .. ... . . . . . . . . ..... . .. . .. . .. . . . ..... ... . .. . .. ... .. . .. . . ... . . . . . ..... ......... ..... .. . . . .. . . . . .. ... . . . . . . . . . . . . . . . . .. . . .. . . . . . . . .. .... .. . . . .. . . . . .. . .. .. . . . ........ . . ........ ..... ........ . . . . .. . .... . .... . .. . .............. ... . ........ . . . . .. . . ............. . . .... ...... . .... .. ... ... . . .... . .. . . .. ... .. .. . ......... . . ... . . . . . . . . ....................... ..... . . . ..... . ..... .. . .. . . .. .. . . ......... . .. . .. . . .. ..... . . . . . . . . . ........................... . ... . ... . . . . . . ............ . . . . .
lowQualScore : 0 3 777 7 444 11111111111111 2 77 8 22 1 444 2 1 1 2 1 2 2 22 2 11111 22 3 66 888 66 000 7 3 0 666666 3 66 88 66 3 88 99 0 0 0 6 00 7777 2 4 555555 0 0 0 0 7 0 0 5 333 0 55 000 0 2 0 55 0 22222222222 11 4 11111 11 4 4 7 4 444 4444 4 11 66 0 2 11 11 1 11 11 66 4 7 4 9 4 7777 9 4 4 0 99 8 888888 5 0 99 000 7 3 7 7 7 0 0 2 66666 0 99 0 66 2 22 4 7 4 88888 000 4 11 4 11 888 99 8 88 0 0 888 7 7 6 7 9 33333 777777777 33333 00 0 3 7 00 7 8 8 0 00 222 5 0 5 5 5 5 0 0 0 0 0 5 0 3 7 3 00 7 3 33 3 0 3 3 2 0 0 33 7777 33 3 3 3 33 3 2 5 2 88 0 88 88 0 0 5 22222222 0 0 00000000 44444 44444444 8 0 0 8 66 0 0000 8 4444 8 66 6 88888888888888 777 7 88888888 0 3 7 0 44 0 0 0000000000000 2 2 8888 555555 2 0000 22 555 888 0 0 2222 0 55 0 2 88 000 22 22 0 888888888 2 0 222 0 2 8 0 0 2 2 2 55555555555555555555555 00000 0 2 0 88888 6 66666 00 8 88 0 0 00 00 4 0 333333333 0 22 7 22 0 7 66 11111 3 7 7 7 7 7 0 7 4 999999999999999999999999999 7 666 4 666 0 8 8 8 8 0 888888888888 0 0 8 5 3
consensus : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AAGTTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAN-TTTTGCAG-T-T-AA------TA-T--C--A--TAACGCAA-G--TT--CA-T-GTCCCCAAAGCAAAG-TA-TT--TGT----GTCTATAATAGATAACTC--CT--TCTAA-AGC-AAACAATTTGT-CAAACANAACATGTCTT-GC-ATTAGAATAC-TTTTTTA-CA--AAT---AA-AGAAAAA-GT--GG-TAGGC--A--TC----TTCT--TG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG-TCGATAATGTTTTTTCT-A--NACAAGT----CA-TA--ATTTAAG-ACAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATTT-AACAGGC-GT---TTTTCC-AAA-A-TTGA-AATG--CTTTGG-----GAGCAGTGCTATTT--TTGACAATATTAGATAT---G-CTTCT-T-CGAAATTGA-CTGATTGACG-AAGATTTTGTTACCN----CAT-TTGG--TAAAANCATTTCC--ATTTAC-AAATGGCA-TCCGGAATGAAAGA-T-T-TCTTG---AAATTTCGAG--TC-TA--CA-T-TT--GGTAAT--ATATAATTTT-CTT-CATT---TCG-AGTG-CTGTA-TTGGA-----ACATTT---------TTCCT-A-A-ATTGTCAANTAT-GT-CCACCGTAAA-TATATGTAGGTA-CTG-AGTAT-CTATCATGCGTTTTCATACATTGTGATTTAATTTCGCTTTTCTTCTCCTATTCGTTCAAANGNTCCCAACCCGTTTCAAGAGTATAANGATTCCTTTGATGCCAAAATAGACAAACCGGTTACCAATTCTTGCAGCATGTAGCTGAACTTT--TTCTAATTTTTNCAA-ATCTGAAATTGNACA-TCCATCCCATACCACAGAAGCATA--TTCT-A--ATATTGGTCTT--ACAAAC-GT-ATATACATTTTTGACAGTTTATCTCTACANAGAGTAAA-TTTGAGTTTTCTTAATCAATCCTAACTTTT--TA-TAA--GCATGATTTAC--AATGTT-ATCAA-CGTACACA-----G--ACCA-TTTNAA---AT--TCATCTGAAAAAG--CGAGACCAAGATGCTTAAT--G--CGATGAAAC-AT-TTCTAATTGACAACCTTGAAAAAGCAGTTGAGGTATTTGGTTATGTNC-TGATTTACCAAAAAATAAAACCTTGGTTTTATTC-GGATTAAATTGAAG-----------T--AAC---CA-GTC--------TTCAGACCA-TTTTTCTAAT-ATTTC-GA-GATCATGATT-AAGT-A-A----ATTCTATGTTGTTTA-A--ATT-C--CATTATCCG-CG-ATATC-GAATA--GAATT-GTCAT-CAGCANATAACCGA----CANAAAGATAACA--TAT--CGTNAGNAACATCGTT-GACATA-----NA--TCAAAAACAAC-AATGGAC-C-AGNACTGAACCT-TGNGGCACTCCAGCATTA-A-TT-T-CA--AAC--------TGTTG-----AT-ACAAATCTTTATACA-TAA-CT-TTTGCTGTC-TA--TGAT--ATANAA-TAGTTT-TAAACCA--TTGAAAAAGATTTCC-A-CG-CATNCCGTACG-TTTGTAATTTGA--AAANAAGACCCTCA--TGCCA----NACTCTGTCAAATG-C-TT-T-G-ANAG-ATCGC---A-----------------------A-AAAA-C-CATACGACACGATTTNCCNTCATCGATATTTTGAACGATNTT-------A----TG-TATATTT-TAATAAGCTGGT-AACCGTAA
Reference ( family-339 ) : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AAGTTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAN-TTTTGCAG-T-T-AA------TA-T--C--A--TAACGCAA-G--TT--CA-T-GTCCCCAAAGCAAAG-TA-TT--TGT----GTCTATAATAGATAACTC--CT--TCTAA-AGC-AAACAATTTGT-CAAACANAACATGTCTT-GC-ATTAGAATAC-TTTTTTA-CA--AAT---AA-AGAAAAA-GT--GG-TAGGC--A--TC----TTCT--TG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG-TCGATAATGTTTTTTCT-A--NACAAGT----CA-TA--ATTTAAG-ACAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATTT-AACAGGC-GT---TTTTCC-AAA-A-TTGA-AATG--CTTTGG-----GAGCAGTGCTATTT--TTGACAATATTAGATAT---G-CTTCT-T-CGAAATTGA-CTGATTGACG-AAGATTTTGTTACCN----CAT-TTGG--TAAAANCATTTCC--ATTTAC-AAATGGCA-TCCGGAATGAAAGA-T-T-TCTTG---AAATTTCGAG--TC-TA--CA-T-TT--GGTAAT--ATATAATTTT-CTT-CATT---TCG-AGTG-CTGTA-TTGGA-----ACATTT---------TTCCT-A-A-ATTGTCAANTAT-GT-CCACCGTAAA-TATATGTAGGTA-CTG-AGTAT-CTATCATGCGTTTTCATACATTGTGATTTAATTTCGCTTTTCTTCTCCTATTCGTTCAAANGNTCCCAACCCGTTTCAAGAGTATAANGATTCCTTTGATGCCAAAATAGACAAACCGGTTACCAATTCTTGCAGCATGTAGCTGAACTTT--TTCTAATTTTTNCAA-ATCTGAAATTGNACA-TCCATCCCATACCACAGAAGCATA--TTCT-A--ATATTGGTCTT--ACAAAC-GT-ATATACATTTTTGACAGTTTATCTCTACANAGAGTAAA-TTTGAGTTTTCTTAATCAATCCTAACTTTT--TA-TAA--GCATGATTTAC--AATGTT-ATCAA-CGTACACA-----G--ACCA-TTTNAA---AT--TCATCTGAAAAAG--CGAGACCAAGATGCTTAAT--G--CGATGAAAC-AT-TTCTAATTGACAACCTTGAAAAAGCAGTTGAGGTATTTGGTTATGTNC-TGATTTACCAAAAAATAAAACCTTGGTTTTATTC-GGATTAAATTGAAG-----------T--AAC---CA-GTC--------TTCAGACCA-TTTTTCTAAT-ATTTC-GA-GATCATGATT-AAGT-A-A----ATTCTATGTTGTTTA-A--ATT-C--CATTATCCG-CG-ATATC-GAATA--GAATT-GTCAT-CAGCANATAACCGA----CANAAAGATAACA--TAT--CGTNAGNAACATCGTT-GACATA-----NA--TCAAAAACAAC-AATGGAC-C-AGNACTGAACCT-TGNGGCACTCCAGCATTA-A-TT-T-CA--AAC--------TGTTG-----AT-ACAAATCTTTATACA-TAA-CT-TTTGCTGTC-TA--TGAT--ATANAA-TAGTTT-TAAACCA--TTGAAAAAGATTTCC-A-CG-CATNCCGTACG-TTTGTAATTTGA--AAANAAGACCCTCA--TGCCA----NACTCTGTCAAATG-C-TT-T-G-ANAG-ATCGC---A-----------------------A-AAAA-C-CATACGACACGATTTNCCNTCATCGATATTTTGAACGATNTT-------A----TG-TATATTT-TAATAAGCTGGT-AACCGTAA
gi|1 : ATATAA-ATAC-AAATG-T-ATCAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAAATTTTACAG-T-T-AA------TA-T--C--A--TAATGCAA-G--TT--CA-T-GTCCCCAAAGCAAAG-TA-TT--C-T----ATCTAAAATAGATAATTC---T--TCTAA-AGC-AAACAATTTGT-CAAACATAATATGTCTT-GC-ATTAGAATAT-TTTTTTA-CA--AGT---AA-AGAAAA--GT--GG-TAGGC--A--TC----TTCT--TG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG-TCGATAATGTTTTTTCT-A--AACAAGT----CA-TA--ATTTAAT-ACAC-AATATTGCC--T--CAGC--TTTG--TT--TG--ATAATATTT-AACTGGC-GT---TTTTCCAAAA-A-TTGA-AATG--CGTTGG-----GAGCAGTGCTATTT--TTGAAAATATTA-ATAT---G-CTTCT-T-CTAAATTGA-CTGATTGACGCAAGATTCTGTTACCT----CAT-TTGG--TAAAAGCATTTCC--ATTTAC-AGATGACA-TCTGGAATGAAAGA-T-T-TCTTA---AAAATTCGGT--TC-TA--CA---TT--GGTATT--ATATAATTTT-CTT-CATT---T-G-AGTG-CTGTA-TT-GA-----ACATTT---------TTCCTAA-A-ATTG--AACTAT-TT-ATACCATAAA-TAT---TGGGCA-CTG--GT----TATGATGCATTTT-AT-CA-TGTGA-TTAATTTCGCTTTTCTTCTCCT-TTCGTTCAAAGGTTCCCAACCCGTTTCAAAAGTATAAAGATTCTTTTGATGCCAAAATAGACAAACCGGTTACC-ATTCTTGCAG-ATGTAGCTGAACTTT--TTCTAATTTTTCCAA-ATCTGAAATTGCACA-TCCATCCCATACCACAGAAGCATA--TTCTGA--ATATTGGTCTT--ACAAACTGT-ATATACATTTTTGACAGTTTATCTCTACAAAGAGTAAA-TTTGAGCTTTCTTAATCAATCCTAACTTTTTATA-TAA--GCATGATTTAC--AATATT-ATCAA-TGTACACA-----G--ACCA-TTTCAA---AA--TCATCTGAAAAAA--TACAACCAAGATGCTT-AT--G--CGATGAAAC-AT-TTCTAATTGACAACCTTGAAAAAGCAGTTGAGGTATTTGGTTATGTGC-TGATTTACCAAAAAATAAAACCTTGG-TTTATTT-GGATTAAATTGAAG-----------T--AAC---CA-GTC--------TTCAGATCA-TTTTTCTAAT-ATTTC-TATGATCATGATT-AAGT-ACAC---ATTCTATGTTGTTTA-A--ATT-T--C-TTATCCG-CA-ATATT-GAAT---GAATTGGTCAT-CAGCATATAACCGA----CAAAAAGATAACA--TAT--TATGAGGAACATCATT-GACATA-----TA--TCAAAAACAAC-AATGGAC-A-AGTAC-GAACCT-TGTGGCACTCCAGCATTA-A-TT-T-CA--AAC--------TGTTG-----ATAACAAATCTTTATACA-TAACCT-TTTGCTGTC-TA--TTAT--ATAGAA-TAGCTT-TTAACCA--TTGAAAAAGATTTCC-ACCG-CATTCCGTACG-TTTGTAATTTGA--AAAGAAGACCCTCA--TGCCA----GACTCTGTCAAATG-C-CT-T-G-ACAG-ATCGC---A-----------------------A-AAAA-C-CATACAACATGATTTTCCATCATC-ATATTTTTAACAATGCT-------A----TGATATGTTT-TAATAAGTTGGTAAACTGTAA
gi|10 : CTGA-ATGC-AATTG-T-ATTGA---TTAACGATAGTGGATATGTAATAGATTAC--ACT-TAAGT-TATA---AAGCTG-ATCAATTCAAGTA-AA-TC-TA--ATT-GACA-----------------G-GTTT-GAACAG---CAGGAAAAAAAA-T---GCTG-T-T-TA------CA-T--T--T--TGACGT---G--TT--AA-T-GGTCTAAAAGTAAAG-TA-TT--TGT----GTATATAATAGAT---TC--CTCGTCTAA-AGC-AAACAATTTGT-TAAATATGACATGTCTT-GC-ATTAGAATAA-ATTTT-A-CA--GAT---AA-AGAAAAA-GT--GG-TAGGC--A--TC----TT-----A-TTTTCACATACAT--GTAAATGC-TTTTGTGTG-T-GA--ATTTATTTTCT-A--TGTA--T----C-------TTTAAG-ATAC-AATTTTACC--T--CAGC--TTTG--CG--TGA-ATTATATCT-GACAGCC-GT---TTTT-C-AAA-A-TTGC-AATG--CTTT-G-----GAGCAGTGtga
gi|11 : TGAAATTGAACA-TCCATCCCATACTATTGAAGCATA--TTCT-A--ACATTGGTCTT--ACAAAA-GTTACATACATTTTTGAAAGTTTTTCTCTACATAGAATAAA-TTTAAGTTT-CTTAATCAGTCCTAACTTTT--TA-TAA--GCATGATTTAC--AATGGT-ATCAA-TGTACACA-----G--ACCA-TTTCAA---AT---CATCTGAAAAAAATC-AGACCAAGATGCTTAATATG--CGATGAAAC-AAATTCTAATCGACAACCTTGAAAAAGCAATTGAGGTATTTGGTTGTGTGC-TGATTTCCCAAAAAATAAAACCTTGGTTTTATTT-GGATTAAGTTGAAG-----------T--AAC---TA-GTC--------CTCAGACCA-TTTTTCCAAT-ATT
gi|12 : ATTTAA-ATAC-AAATG-T-ATAAA---T--------------A-GTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-ATTT-GAACTG---CAG--AAAAAAA-ATT-ACAG-T-T-AA------TAAT--C--A--TAATGCAA-G--TTTTCA-T-GTCCCCAAAGCAAAG-TA-TT--TGT----ATCTATAATAGATAACTC---T--TCTAA-AGC-AAACATATTGT-CAAACAAAA--TGTCTT-GC-ATTAGA------TTTTTA-CA--AGT---AA-AGAAAAA-A---GG-TAGGC--A--TC----TTCT--TG-TTTTC-----CA---ATAAACAATTTAGGTGTG-TCGATAATGTTTTTTCT-A--AACAAGT----CA-TA--ATTTAAT-ACAC-ct
gi|13 : ATCTAA-ATAC-AAATG-TCATTGAATAT--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGATTAATATAG-TTTTGGAACTG---CAG--AAATA---TTTTACAGTT-T-AA------TA-T--C--A--TAATGCAACGT-TT--CATT-GTCCCCAAAGCAAAG-TA-TT--TGTATAGATCTATGATAGATAACT---CT--TCTAA-AGC-AAACAATTTAT-CAAACATAACATttt
gi|14 : T-TTTGC-GTCCTA--TGATCGATATAAATAACCTATAAACCA--CTGTAGAAGATTACC-A-GA-TATATCATACG-TTTGTAATTTAA--ATATGAGAGCACTA--TGCCA----CACTTTGTCAAATG-CTTT-T-G-ATAG-ATCAC---A-----------------------A-AAGG-C-CATAAAGCACGATTTACCGTCATCGATGTTTTGGACGATGTTAAGGTACA----TG-TATATTT-TAAGAAGCTGtgaattttatttaaggtctctacacataatacaaacaaat
gi|15 : cagatccttacgA-----A--ACCA-TNNNNN---NNNNTTATTAGAAAAGG--TGAGACCAAGATGTTT-----G--TAA-GAAATTAT-TTCTAATTGACAATTTTTAACATGCAGTC----------ATTATGACT-TGCCTTGTAAAAGAATAAAACCATAGTTTTATTA-AGATTAAATTTCAA-----------T--ATC---CA-TTC--------TTCA-------------AGT-ATTTT-GA-GATCGTGATT-Atat
gi|16 : tgatttgccttgtaaaagaataATATAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAA-TTTT-GAACTG---CAG--AATTTTT-TTTTACAG-T-T-AATACATGTA-T--C--A--TAATGCAA-GTTTT--CA-T-GTCCAC-AAGCAAAG-TA-TT--TGT----ATCTATAATAGATAA
gi|17 : -CATACGGTGTG-TTTATAATTTGA--AAATGAGGCTCCCA--AGCCA----TACTCTATCAAAAT-C-TT-T-GGAAAA-ATCAC---AAAAATAAATAAATAGTGGTAAATA-AAAATC-CACACGACACAATTTACT---ATCCACATTTTGAAC-ATTTG-------AACTTTG-TATATTTGTAATAA-TTGAT-AACCGTAA
gi|18 : ATCTAA-ATAC-AAATG-T-ATTGA---T--------------ATATAATA-AGTAT--ACTAAA--T-TATATATAAATTG-ATAAATT-A-TTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAA-ATTGGCAG-T-T-AA------TA-T--C--A--TAACGCAA-G--Taatga
gi|19 : taAAATTGA-CTGATTGACA-AATATTTGAATATAT----CAT-TGGG----AAAACATTCCG--TTTTGC-AAATGTCA-TCTGGAA---------------CG---AAATTTCGAG--TA-TA--CATT-TT--GATGAT--ATGCGATTTT-TTA-AAAT---TTGTAGTG-CTATA-TT-GA-----ACATTT---------Tagattggtaatcccagcagcacacattttg
gi|2 : taa-GT-ATTA--ACAT-TTTTTTA-CATGACTGTAAA-AGAAAAACGT--GG-AAGGCC-AGTTCACTGTTCTATCG-TTTCC-----CAC--ATAAACAA-TTAGGTGTG-TC-ATCATGTTTTTTCT-A---ACAGTT----CA-TGTCATTTAAT-ACACGAATTAAGCCCGT--AAGT--TTTG--TT--TGAGATAATATTT-AACTGGCCGT---TTTTCCCAAACA-TTGA-AATTTTCTTTGG------AGC-GTGCTATTGAGTTGACAATATTAGATAT---GTCTTCT-TGCTAAATTGA-CTGAT-GACG-A-GATTTTGTTACCGAATTCAT-TTGG--TAAA-GCATT-CC--ATTTAC-AGATG--A-TCTGGAATGAAAGAATAT-TCTTT---AAATTTCG-GCTTC-TAACCT-T-TT--GGTATC--ATATACTTTTTCTT-CATT---TCG--GTG-CTGTC-TTTGA-----ACATTT---------TCCCT-A-A-ACTG---ACTATAGT-TCAC-ATAAA----ATG-AGGCAACTG-TGT----TATGATG-ATTTTCATACATTGTGATTTAATTTCGCTTTTCTTCTCCTATTCGTT-AAATGGTCCCAA-CTGTTT-AAGAGTAT-ATGATTTCTTTGATGTCATAATAGAT-AACCTGT--CCAATTCTTGCAGCATGTAGC-GAACTTTAGTTCTAATTTTTACAA-A-CTG-AATTGGAAACTCCATCCCATACCACAGAAGCATAATCTCT-ACCATATTGGTCTTTAACAAAC-GT-ATATACA-TTTTGACAGTTTATCTCTACAC-GAGTAAACTTTGAGTTTTTATAATCAAT-CTAACTTTT--TACTAAAGGCAGGATTTACAAAATATTAATCAATCGTA-ACAGACAGG--ACCA-TTTAAA---AT--TCATCTGAAAAAT--C-AAACCAAGATGCTTAAT--G--CGATGAAACAAT-TTCTAAATTACAACCTGAAAAAAGCAGTTGAGGTATTTGGTTATGT-C-TGATTTACC-AAAAATAAAACCTTGTTTTGATTTGGGATTAAATTG--G-----------T--AAC---CA-ATCT-------TTCAGACCATTTTTTCTAAT-ATTGCTAA-AAGCATGATTAAAGT-A-GGCACATTCTA-GTTGTTTA-A--ATT-C----TTA-CCG-CATATATG-GAATT--GAA-T-GTCATCCAGCATATTACCGA----CAAAGAGATAATAGTTATGAAGTGAGCAACATCGTTGGACATGAGTGTTA--TCAAAAACAACAAATGGAC-CAAGGACGGAACCTATGTGGCACTCCAGCATTA-ATTT-T-CA--AACTG------TGTTG-----AT-ACAAATCTTTATACA-TAA--T-TTTGCTGTC-TAATTGAT--ATAGAA--AGTTT-TAAACCA--TTGAAAAAGATTT-C-A-CGTCATCGCGATCGTTTTGTAATTTGAAGAAAGAAGACCCTCAT-TGCCAGAACGACTCTGTCAAATGCC-TT-T-G-ACAGAATCGCCATA-----------------------A-AAAA---CATACcttattg
gi|20 : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAG---TTACAG-T-T-AA------TA-T--C--A--TAATGCAA-G--TT--atattgactttt
gi|22 : aGATGCCAAAATAGACAAACCAGTTAC-AATTGTTGCAGCGTGTAATTGAATTTT--TTCTA-TTTTTTTAATATCTGAAATTGCACA-TCCAt
gi|23 : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-CATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AG
gi|24 : taTTC--ATTTTT-GAACGACA-TCTGGAATGAATGA-T-T-----------ATTTTGTG--TT-TA--CA-TGTT--AGAAAT--ATATAGTTGT-CTT-CATT---
gi|25 : T-CAAACATAACATGTCTT-GC-ATTATAATAA--GTTTTA-CG--AAT---AA-AGCAACT-GT--GA-TAAGC--A--
gi|26 : GACCCTCA--TGCCA----GACTCTGTCAAATG-C-TT-T-G-ACAG-ATCGC---A-----------------------A-AAAA-C-CATAc
gi|27 : C-AATTATGCC--T--CAAC--TTTG--CG--TAA-ATAATATTT-AACAAGC-G----TTTTCC-AAA-A-aa
gi|28 : -TT--TGT----GTCTATAAGAGATAACTC--A---TCTAA-AGC-AAACAA
gi|3 : TAATATAC-AAATA-G-AG-AA---T--------------ATATGATA-AGTGCGCACTGAA--T-TTTA---AAGTTG-ATAAATC-AAGTA-AAATCGTA--TTTTGACATTACATATAT--ATATAG-TTT--GAACTG---CAG--AAAAAAT-TTTTGCAG-T-TTAA------CA-T--CTCA--TGACGTAA-G--TTA-CA-T-GTCCCCAAAGTAAAG-TA-TT--TGT----GTCTATAAGAGA-AACTCATCT--TTTAA-AGT-AAACAATATGA-CAAACCAAACTTGTCTT-GC-ATTAGAATAC--TTTTTA-CA--AAT---AAGAGAAAAA-GT--GGTTAAGC--A---C----TTCT--TG-TTGTC-----CAC--ATAAACAA-TTAGGTGTG-TCAATAATGTTTTTTCT-A--TACAAGT----CA-TA--ATTCAAG-ATAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATGT-AATAGGC-GT---TTTCCC-AAA-A-TTGA-AATG--CTTTGG-----AGGCAGT-CTA-TT--TTGACAATATTAGATAT---G-CGTCT-T-CGAAATTGA-TTGATTGACG-AAGATTTTGTTACTA----CAT-TTGG--TAAATTCATGTTCAGATATAC-AAATAGCA-TCCGGAATGAAAGA-T-T-TCTTGGTTAAATTTCAAG--TC-TA--CA-T-TT--GGTAACTGATATAATTTT-CTTGCGTT---TCG-AGTG-CT-TA-TTGGA-----AAACTTACTTTTGCATTTCT-----ATTGTCAAATAT-GT-CCATGGTAAA-TATATGTAGGTA-CTG-AGTAT-CTATCATGCGTTca
gi|4 : TAATATAC-AAATA-G-AG-AA---T--------------ATATGATA-AGTGCGCACTGAA--T-TTTA---AAGTTG-ATAAATC-AAGTA-AAATCGTA--TTTTGACATTACATATAT--ATATAG-TTT--GAACTG---CAG--AAAAAAT-TTTTGCAG-T-TTAA------CA-T--CTCA--TGACGTAA-G--TTA-CA-T-GTCCCCAAAGTAAAG-TA-TT--TGT----GTCTATAAGAGA-AACTCATCT--TTTAA-AGT-AAACAATATGA-CAAACCAAACTTGTCTT-GC-ATTAGAATAC--TTTTTA-CA--AAT---AAGAGAAAAA-GT--GGTTAAGC--A---C----TTCT--TG-TTGTC-----CAC--ATAAACAA-TTAGGTGTG-TCAATAATGTTTTTTCT-A--TACAAGT----CA-TA--ATTCAAG-ATAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATGT-AATAGGC-GT---TTTCCC-AAA-A-TTGA-AATG--CTTTGG-----AGGCAGT-CTA-TT--TTGACAATATTAGATAT---G-CGTCT-T-CGAAATTGA-TTGATTGACG-AAGATTTTGTTACTA----CAT-TTGG--TAAATTCATGTTCAGATATAC-AAATAGCA-TCCGGAATGAAAGA-T-T-TCTTGGTTAAATTTCAAG--TC-TA--CA-T-TT--GGTAACTGATATAATTTT-CTTGCGTT---TCG-AGTG-CT-TA-TTGGA-----AAACTTACTTTTGCATTTCT-----ATTGTCAAATAT-GT-CCATGGTAAA-TATATGTAGGTA-CTG-AGTAT-CTATCATGCGTT
gi|5 : TAATATAC-AAATA-G-AG-AA---T--------------ATATGATA-AGTGCGCACTGAA--T-TTTA---AAGTTG-ATAAATC-AAGTA-AAATCGTA--TTTTGACATTACATATAT--ATATAG-TTT--GAACTG---CAG--AAAAAAT-TTTTGCAG-T-TTAA------CA-T--CTCA--TGACGTAA-G--TTA-CA-T-GTCCCCAAAGTAAAG-TA-TT--TGT----GTCTATAAGAGA-AACTCATCT--TTTAA-AGT-AAACAATATGA-CAAACCAAACTTGTCTT-GC-ATTAGAATAC--TTTTTA-CA--AAT---AAGAGAAAAA-GT--GGTTAAGC--A---C----TTCT--TG-TTGTC-----CAC--ATAAACAA-TTAGGTGTG-TCAATAATGTTTTTTCT-A--TACAAGT----CA-TA--ATTCAAG-ATAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATGT-AATAGGC-GT---TTTCCC-AAA-A-TTGA-AATG--CTTTGGAGGCAGTGCAGTGCTATTT--TTGACAATATTAGATAT---G-CGTCT-T-CGAAATTGA-TTGATTGACG-AAGATTTTGTTACTA----CAT-TTGG--T-AAATCA-TTCC--ATTTAC-AAATGGCA-TCCGGAATGAAAGA-T-T-TCTTGT--AAATTTCAAG--TC-TA--CATT-TT--GGTAAT--ATATAATTTT-CTT-CATT---TCG-ATTG-CTGTA-TTGAAAACTTACTTTT---------GTCAT-A-CTATTGTCAAATAT-GT-CCA-TGTAAA-TATATGTAGGTA-CTGTAGTATACTATCAT
gi|6 : ATTTAA-ATACCAAATGCT-ATTAG---T--------------ATGTAATGCAG-AT--ACTATA--TATATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGATA-ATATAG-ATTT-GAACTG---CAG----AAATT-TTTTACAGTT-T-AA------TA-T--C--ATTTAATGCAA-GTTTT--CA-TGGTCCCCACAACAAAGTTATTT--TGT----ATCTATAATAGATAACTCT-TT--TCTAA-AGCAAAACAACTTGTCCAAACATAACATGTCTT-GCAATTAGAATA--TTTTTTACCA--AGT---AA-AG-AAAA-GTTCGG-TCGGC--A--TCT---TTCT--TGTTTTTC-----CACCAATAAACAA--TAGGTGTGTTCGATAATGTTTTTTCTAA--AACAAGC----CATTA--ATTTAAT-ACAC-ATTTATGCC--TAACGTT--TTTGTTTGGTTGA-ATAATATTTAAACTGGC-G----TTTTCC-AAA-ATTTGAGAATG--CTTT-G-----GAGCA-TGCTATTG--TTGACAATATTAGATATTACG-CTCTT-T-CTAATTTGAGCTGATTGACG-AAGA-TTTGTTATCT----CAT-TTGGGTTAAAAGCA-TTCC--ATTTAC-AGATGACATTCTGGAATGAAAGA-----TCTTA---AAAATTCG-G--TC-TA--CA-T-TTTCAGTATT--ATATAATTTT-CTT-CATTTCGTCG-AGTGCCTGTAGTTGAA-----ACATTT---------TTCCT-ATA-ATTG---ACTATAGTATCACCATAAAGTAT
gi|7 : taTTTCTAAGTTAAGCC-AAGTCTT--TA-TTC--GCATTATTTAC--AATGTT-ATTAG-CATACATA-----GTGACCAGCTTAAATTAAT--TCATTCGTAAAAG--TAAGACCAAGGTGCTTTGT--GAACAGTAAAAT-AT-G-CAGGCTGACATTGTTGAAACATTACTT----TTTTTTTTTTTGGTCATGGT------AAAAGTATTGATTTTGTTTTATTC-AAATTAATTTGAAAATTAATTTATTTCAAAT---TA-ATCACAAGAAGTTTGGACCA-CTCATCTAAG-ATTAT-TA-GATCATGATT-ATTT-T-A----AC---ATGTTGTTTA-ATCACTGCAACATTATACGACG-ATCTTTGAATA--GAATT-GTCAT-CTGCAAATAATCTA----CACATTGACAACA--TAC--TGTCTGATACAACGTA-AATATA-----GATTTTAAAAAT-GC-AGAGGTCTC-AGGACTGAGCCT-TGGGGAACACCAACAGTATG-CT-T-C-----C--------GGTTGAAGAAAT-AGAAATGTATATATA-TA-------TAC-GTC--A--CTAT--ATATAT-TTGTTC-TCTATTA--TTTAAATA-ATTT------G-TAAACT-TATG-GGCTTAGTTTGA--AAAAAAGGCCTTTA--TTTCA----CACTTTGTCGAAGG-C-TTATAG-AAGG-GTCAC---A-----------------------A-AAAT-C-CATACGAAATAATCTTCCCTCAT
gi|8 : A---T--------------ATG-AATA-GGTCC--ACTA-A--T-TATA---AAGTTGGATACATC-AAGTATAA-TC-TAAATTT-GACAT-----ACATT-ATGTAAATTTT-GAACTGATGCAG--AAAAA-C-TTTTGCAA-TGT-AA------CA-CAAC--A--TAACATAG-GG-TT--TA-T--TTCCCAAATAGAAG-TA-CTAGTGT----ATCTATAG--AATAATTC--GT--GTTAATAGC-AA-CAATTTGT-CAAACAAAACGTGTCTTGGC-ATTA-AATACTTTTTTTA-C---AAT---AA-AG---AA-GT--GA-TTAGCATA--TC----TTCT--GG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG--CAATAATGGTTTTTCT-AATAACAAATAGAATA-TA--ATTTAGGAACAC-AAGT---TC--T--CA-CTTTTTG--TGT-TGG-ATAATATTT-AA-AGAT-ATGACTTATCC-AAA-A-TTGA-AATG--CTTT-G-----GAGCAGTGCT-TTT--TTGACAA-ATTAGATAT---G-CTTCTCT-CGAATGTGA-CTGATTGACA-AAGA--TTGTTAACT----TGTGTTTG--TGAAACTCGTTCC--ATTTACTAAAT-GTA-TCCAGAAGTAAAGA-T-TCTCTTG---TAATTTCGAG--TCTTA--CA-T-ta
gi|9 : atatacaatagaaaatagtataataaagactAG-----------T--AACGCCCATGTA--------TT-AGACCAGTTTTTTTAATCATATC-AA-GGTCATTTGT-AAGTTA-A----AGAGAATG--GTTTACA--ATA-C--CATTATCAA-TG-ATAGC-AAATAAGGAGAT-GTAAT-CAGCAAATAATCGAATTTTATTAGGA----A--TAT--CATTGGTGACGTCATT-GATATA-----AA--GTAAGGACAAG-AATAGAC-CTAGTACTGACCCC-TGAGGTACCCCATCATTA-A-TTATACAGTAATATTTTCTTTGTAG-----AT-GTAAAACCTTCTACAGTTA-CTCTTTGCTGTT-TC--TGAG--TTA-AG-TAGTTT-TAATCCAGCTT--AATATATTACCTA-CA-AAACCCA-ACC-TCTGAAGTTTAT--GAACAAAA--CTTAAGTGCCA----AACTCGGTTAAACG-C-TT-T-G-GGAA-AT------A-----------------------ATAAAA-CGAATAT--C----TTTCCCTTTATCAAGACTTTGAATTATTTT-------AT---TA-CACATTT-CTACCAGCTGGT-ggt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTAACAGTAATTTCTATTTCAGCAACGCTATTTGATGAATATTGGAAAGAATTATCAACTGCAAAAAGTCTGCACATAGACAGCATTTTGTCTGAAAC
Alignments
lowQualScore : 1 11111111111111 11 1 22222 11 1 11 11 11 222222 222 1 1 11111111111 11111 111 11 111111 111 11111 11 222 11 1 11111 444444444 33333 11 1 11 11 111 1 1 1 1 1 1 1 1 1 11 11 1 1 11 2222 11 1 1 1 11 1 11 11 1 1 22222222 11111111 22222 22222222 1 11 1111 11 33333333333333 111 33333333 1 11 5555555555555 1111 222222 1111 11 222 111 1 2222 11 111 1 333333333 1 222 1 55555555555555555555555 22222 1 1 22222 1 11111 11 11 222222222 11 11111 555555555555555555555555555 1 1 555555555555 1 1 1
lowQualScore : 0 3 333 6 555 88888888888888 6 22 2 44 3 555 8 3 3 0 3 9 9 44 9 33333 11 3 66 555 44 999 6 3 0 999999 3 44 33 44 3 55 55 4 4 4 3 55 7777 4 4 888888 4 4 4 1 2 4 4 2 555 4 55 777 2 3 4 55 2 77777777777 66 4 11111 66 4 4 2 4 111 9999 4 66 55 4 2 66 66 0 66 66 00 4 0 4 0 4 9999 8 4 4 5 66 8 222222 2 5 77 000 5 1 5 5 0 5 5 3 11111 5 66 2 44 6 22 4 3 4 88888 000 6 66 4 66 999 66 0 33 5 0 888 5 5 6 5 7 44444 555555555 00000 88 1 3 6 33 6 0 0 8 44 999 2 5 5 5 5 5 5 1 1 5 5 5 1 7 3 7 44 6 7 88 7 1 3 7 3 1 0 88 2222 88 3 3 7 88 3 3 2 3 33 0 33 33 0 0 2 44444444 8 1 77777777 88888 22222222 0 6 8 0 00 1 1111 0 7777 0 22 5 11111111111111 111 6 00000000 1 3 6 1 44 8 8 1111111111111 3 3 4444 999999 3 2222 44 333 000 0 1 1111 1 22 7 0 33 888 22 22 0 000000000 3 0 666 1 9 0 0 1 0 1 0 66666666666666666666666 55555 0 0 0 55555 0 55555 11 8 88 8 1 11 66 1 5 111111111 1 77 6 99 1 0 33 33333 0 5 5 5 5 5 1 5 0 333333333333333333333333333 5 888 6 333 1 8 2 0 2 1 444444444444 0 0 0 2 3
lowQualScore : . . ... . ... .............. . .. . .. . ... . . . . . . . .. . ..... .. . .. ... .. ... . . . ...... . .. .. .. . .. .. . . . . .. .... . . ...... . . . . . . . . ... . .. ... . . . .. . ........... .. . ..... .. . . . . ... .... . .. .. . . .. .. . .. .. .. . . . . . .... . . . . .. . ...... . . .. ... . . . . . . . . ..... . .. . .. . .. . . . ..... ... . .. . .. ... .. . .. . . ... . . . . . ..... ......... ..... .. . . . .. . . . . .. ... . . . . . . . . . . . . . . . . .. . . .. . . . . . . . .. .... .. . . . .. . . . . .. . .. .. . . . ........ . . ........ ..... ........ . . . . .. . .... . .... . .. . .............. ... . ........ . . . . .. . . ............. . . .... ...... . .... .. ... ... . . .... . .. . . .. ... .. .. . ......... . . ... . . . . . . . . ....................... ..... . . . ..... . ..... .. . .. . . .. .. . . ......... . .. . .. . . .. ..... . . . . . . . . . ........................... . ... . ... . . . . . . ............ . . . . .
lowQualScore : 0 3 777 7 444 11111111111111 2 77 8 22 1 444 2 1 1 2 1 2 2 22 2 11111 22 3 66 888 66 000 7 3 0 666666 3 66 88 66 3 88 99 0 0 0 6 00 7777 2 4 555555 0 0 0 0 7 0 0 5 333 0 55 000 0 2 0 55 0 22222222222 11 4 11111 11 4 4 7 4 444 4444 4 11 66 0 2 11 11 1 11 11 66 4 7 4 9 4 7777 9 4 4 0 99 8 888888 5 0 99 000 7 3 7 7 7 0 0 2 66666 0 99 0 66 2 22 4 7 4 88888 000 4 11 4 11 888 99 8 88 0 0 888 7 7 6 7 9 33333 777777777 33333 00 0 3 7 00 7 8 8 0 00 222 5 0 5 5 5 5 0 0 0 0 0 5 0 3 7 3 00 7 3 33 3 0 3 3 2 0 0 33 7777 33 3 3 3 33 3 2 5 2 88 0 88 88 0 0 5 22222222 0 0 00000000 44444 44444444 8 0 0 8 66 0 0000 8 4444 8 66 6 88888888888888 777 7 88888888 0 3 7 0 44 0 0 0000000000000 2 2 8888 555555 2 0000 22 555 888 0 0 2222 0 55 0 2 88 000 22 22 0 888888888 2 0 222 0 2 8 0 0 2 2 2 55555555555555555555555 00000 0 2 0 88888 6 66666 00 8 88 0 0 00 00 4 0 333333333 0 22 7 22 0 7 66 11111 3 7 7 7 7 7 0 7 4 999999999999999999999999999 7 666 4 666 0 8 8 8 8 0 888888888888 0 0 8 5 3
consensus : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AAGTTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAN-TTTTGCAG-T-T-AA------TA-T--C--A--TAACGCAA-G--TT--CA-T-GTCCCCAAAGCAAAG-TA-TT--TGT----GTCTATAATAGATAACTC--CT--TCTAA-AGC-AAACAATTTGT-CAAACANAACATGTCTT-GC-ATTAGAATAC-TTTTTTA-CA--AAT---AA-AGAAAAA-GT--GG-TAGGC--A--TC----TTCT--TG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG-TCGATAATGTTTTTTCT-A--NACAAGT----CA-TA--ATTTAAG-ACAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATTT-AACAGGC-GT---TTTTCC-AAA-A-TTGA-AATG--CTTTGG-----GAGCAGTGCTATTT--TTGACAATATTAGATAT---G-CTTCT-T-CGAAATTGA-CTGATTGACG-AAGATTTTGTTACCN----CAT-TTGG--TAAAANCATTTCC--ATTTAC-AAATGGCA-TCCGGAATGAAAGA-T-T-TCTTG---AAATTTCGAG--TC-TA--CA-T-TT--GGTAAT--ATATAATTTT-CTT-CATT---TCG-AGTG-CTGTA-TTGGA-----ACATTT---------TTCCT-A-A-ATTGTCAANTAT-GT-CCACCGTAAA-TATATGTAGGTA-CTG-AGTAT-CTATCATGCGTTTTCATACATTGTGATTTAATTTCGCTTTTCTTCTCCTATTCGTTCAAANGNTCCCAACCCGTTTCAAGAGTATAANGATTCCTTTGATGCCAAAATAGACAAACCGGTTACCAATTCTTGCAGCATGTAGCTGAACTTT--TTCTAATTTTTNCAA-ATCTGAAATTGNACA-TCCATCCCATACCACAGAAGCATA--TTCT-A--ATATTGGTCTT--ACAAAC-GT-ATATACATTTTTGACAGTTTATCTCTACANAGAGTAAA-TTTGAGTTTTCTTAATCAATCCTAACTTTT--TA-TAA--GCATGATTTAC--AATGTT-ATCAA-CGTACACA-----G--ACCA-TTTNAA---AT--TCATCTGAAAAAG--CGAGACCAAGATGCTTAAT--G--CGATGAAAC-AT-TTCTAATTGACAACCTTGAAAAAGCAGTTGAGGTATTTGGTTATGTNC-TGATTTACCAAAAAATAAAACCTTGGTTTTATTC-GGATTAAATTGAAG-----------T--AAC---CA-GTC--------TTCAGACCA-TTTTTCTAAT-ATTTC-GA-GATCATGATT-AAGT-A-A----ATTCTATGTTGTTTA-A--ATT-C--CATTATCCG-CG-ATATC-GAATA--GAATT-GTCAT-CAGCANATAACCGA----CANAAAGATAACA--TAT--CGTNAGNAACATCGTT-GACATA-----NA--TCAAAAACAAC-AATGGAC-C-AGNACTGAACCT-TGNGGCACTCCAGCATTA-A-TT-T-CA--AAC--------TGTTG-----AT-ACAAATCTTTATACA-TAA-CT-TTTGCTGTC-TA--TGAT--ATANAA-TAGTTT-TAAACCA--TTGAAAAAGATTTCC-A-CG-CATNCCGTACG-TTTGTAATTTGA--AAANAAGACCCTCA--TGCCA----NACTCTGTCAAATG-C-TT-T-G-ANAG-ATCGC---A-----------------------A-AAAA-C-CATACGACACGATTTNCCNTCATCGATATTTTGAACGATNTT-------A----TG-TATATTT-TAATAAGCTGGT-AACCGTAA
Reference ( family-339 ) : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AAGTTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAN-TTTTGCAG-T-T-AA------TA-T--C--A--TAACGCAA-G--TT--CA-T-GTCCCCAAAGCAAAG-TA-TT--TGT----GTCTATAATAGATAACTC--CT--TCTAA-AGC-AAACAATTTGT-CAAACANAACATGTCTT-GC-ATTAGAATAC-TTTTTTA-CA--AAT---AA-AGAAAAA-GT--GG-TAGGC--A--TC----TTCT--TG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG-TCGATAATGTTTTTTCT-A--NACAAGT----CA-TA--ATTTAAG-ACAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATTT-AACAGGC-GT---TTTTCC-AAA-A-TTGA-AATG--CTTTGG-----GAGCAGTGCTATTT--TTGACAATATTAGATAT---G-CTTCT-T-CGAAATTGA-CTGATTGACG-AAGATTTTGTTACCN----CAT-TTGG--TAAAANCATTTCC--ATTTAC-AAATGGCA-TCCGGAATGAAAGA-T-T-TCTTG---AAATTTCGAG--TC-TA--CA-T-TT--GGTAAT--ATATAATTTT-CTT-CATT---TCG-AGTG-CTGTA-TTGGA-----ACATTT---------TTCCT-A-A-ATTGTCAANTAT-GT-CCACCGTAAA-TATATGTAGGTA-CTG-AGTAT-CTATCATGCGTTTTCATACATTGTGATTTAATTTCGCTTTTCTTCTCCTATTCGTTCAAANGNTCCCAACCCGTTTCAAGAGTATAANGATTCCTTTGATGCCAAAATAGACAAACCGGTTACCAATTCTTGCAGCATGTAGCTGAACTTT--TTCTAATTTTTNCAA-ATCTGAAATTGNACA-TCCATCCCATACCACAGAAGCATA--TTCT-A--ATATTGGTCTT--ACAAAC-GT-ATATACATTTTTGACAGTTTATCTCTACANAGAGTAAA-TTTGAGTTTTCTTAATCAATCCTAACTTTT--TA-TAA--GCATGATTTAC--AATGTT-ATCAA-CGTACACA-----G--ACCA-TTTNAA---AT--TCATCTGAAAAAG--CGAGACCAAGATGCTTAAT--G--CGATGAAAC-AT-TTCTAATTGACAACCTTGAAAAAGCAGTTGAGGTATTTGGTTATGTNC-TGATTTACCAAAAAATAAAACCTTGGTTTTATTC-GGATTAAATTGAAG-----------T--AAC---CA-GTC--------TTCAGACCA-TTTTTCTAAT-ATTTC-GA-GATCATGATT-AAGT-A-A----ATTCTATGTTGTTTA-A--ATT-C--CATTATCCG-CG-ATATC-GAATA--GAATT-GTCAT-CAGCANATAACCGA----CANAAAGATAACA--TAT--CGTNAGNAACATCGTT-GACATA-----NA--TCAAAAACAAC-AATGGAC-C-AGNACTGAACCT-TGNGGCACTCCAGCATTA-A-TT-T-CA--AAC--------TGTTG-----AT-ACAAATCTTTATACA-TAA-CT-TTTGCTGTC-TA--TGAT--ATANAA-TAGTTT-TAAACCA--TTGAAAAAGATTTCC-A-CG-CATNCCGTACG-TTTGTAATTTGA--AAANAAGACCCTCA--TGCCA----NACTCTGTCAAATG-C-TT-T-G-ANAG-ATCGC---A-----------------------A-AAAA-C-CATACGACACGATTTNCCNTCATCGATATTTTGAACGATNTT-------A----TG-TATATTT-TAATAAGCTGGT-AACCGTAA
gi|1 : ATATAA-ATAC-AAATG-T-ATCAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAAATTTTACAG-T-T-AA------TA-T--C--A--TAATGCAA-G--TT--CA-T-GTCCCCAAAGCAAAG-TA-TT--C-T----ATCTAAAATAGATAATTC---T--TCTAA-AGC-AAACAATTTGT-CAAACATAATATGTCTT-GC-ATTAGAATAT-TTTTTTA-CA--AGT---AA-AGAAAA--GT--GG-TAGGC--A--TC----TTCT--TG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG-TCGATAATGTTTTTTCT-A--AACAAGT----CA-TA--ATTTAAT-ACAC-AATATTGCC--T--CAGC--TTTG--TT--TG--ATAATATTT-AACTGGC-GT---TTTTCCAAAA-A-TTGA-AATG--CGTTGG-----GAGCAGTGCTATTT--TTGAAAATATTA-ATAT---G-CTTCT-T-CTAAATTGA-CTGATTGACGCAAGATTCTGTTACCT----CAT-TTGG--TAAAAGCATTTCC--ATTTAC-AGATGACA-TCTGGAATGAAAGA-T-T-TCTTA---AAAATTCGGT--TC-TA--CA---TT--GGTATT--ATATAATTTT-CTT-CATT---T-G-AGTG-CTGTA-TT-GA-----ACATTT---------TTCCTAA-A-ATTG--AACTAT-TT-ATACCATAAA-TAT---TGGGCA-CTG--GT----TATGATGCATTTT-AT-CA-TGTGA-TTAATTTCGCTTTTCTTCTCCT-TTCGTTCAAAGGTTCCCAACCCGTTTCAAAAGTATAAAGATTCTTTTGATGCCAAAATAGACAAACCGGTTACC-ATTCTTGCAG-ATGTAGCTGAACTTT--TTCTAATTTTTCCAA-ATCTGAAATTGCACA-TCCATCCCATACCACAGAAGCATA--TTCTGA--ATATTGGTCTT--ACAAACTGT-ATATACATTTTTGACAGTTTATCTCTACAAAGAGTAAA-TTTGAGCTTTCTTAATCAATCCTAACTTTTTATA-TAA--GCATGATTTAC--AATATT-ATCAA-TGTACACA-----G--ACCA-TTTCAA---AA--TCATCTGAAAAAA--TACAACCAAGATGCTT-AT--G--CGATGAAAC-AT-TTCTAATTGACAACCTTGAAAAAGCAGTTGAGGTATTTGGTTATGTGC-TGATTTACCAAAAAATAAAACCTTGG-TTTATTT-GGATTAAATTGAAG-----------T--AAC---CA-GTC--------TTCAGATCA-TTTTTCTAAT-ATTTC-TATGATCATGATT-AAGT-ACAC---ATTCTATGTTGTTTA-A--ATT-T--C-TTATCCG-CA-ATATT-GAAT---GAATTGGTCAT-CAGCATATAACCGA----CAAAAAGATAACA--TAT--TATGAGGAACATCATT-GACATA-----TA--TCAAAAACAAC-AATGGAC-A-AGTAC-GAACCT-TGTGGCACTCCAGCATTA-A-TT-T-CA--AAC--------TGTTG-----ATAACAAATCTTTATACA-TAACCT-TTTGCTGTC-TA--TTAT--ATAGAA-TAGCTT-TTAACCA--TTGAAAAAGATTTCC-ACCG-CATTCCGTACG-TTTGTAATTTGA--AAAGAAGACCCTCA--TGCCA----GACTCTGTCAAATG-C-CT-T-G-ACAG-ATCGC---A-----------------------A-AAAA-C-CATACAACATGATTTTCCATCATC-ATATTTTTAACAATGCT-------A----TGATATGTTT-TAATAAGTTGGTAAACTGTAA
gi|10 : CTGA-ATGC-AATTG-T-ATTGA---TTAACGATAGTGGATATGTAATAGATTAC--ACT-TAAGT-TATA---AAGCTG-ATCAATTCAAGTA-AA-TC-TA--ATT-GACA-----------------G-GTTT-GAACAG---CAGGAAAAAAAA-T---GCTG-T-T-TA------CA-T--T--T--TGACGT---G--TT--AA-T-GGTCTAAAAGTAAAG-TA-TT--TGT----GTATATAATAGAT---TC--CTCGTCTAA-AGC-AAACAATTTGT-TAAATATGACATGTCTT-GC-ATTAGAATAA-ATTTT-A-CA--GAT---AA-AGAAAAA-GT--GG-TAGGC--A--TC----TT-----A-TTTTCACATACAT--GTAAATGC-TTTTGTGTG-T-GA--ATTTATTTTCT-A--TGTA--T----C-------TTTAAG-ATAC-AATTTTACC--T--CAGC--TTTG--CG--TGA-ATTATATCT-GACAGCC-GT---TTTT-C-AAA-A-TTGC-AATG--CTTT-G-----GAGCAGTGtga
gi|11 : TGAAATTGAACA-TCCATCCCATACTATTGAAGCATA--TTCT-A--ACATTGGTCTT--ACAAAA-GTTACATACATTTTTGAAAGTTTTTCTCTACATAGAATAAA-TTTAAGTTT-CTTAATCAGTCCTAACTTTT--TA-TAA--GCATGATTTAC--AATGGT-ATCAA-TGTACACA-----G--ACCA-TTTCAA---AT---CATCTGAAAAAAATC-AGACCAAGATGCTTAATATG--CGATGAAAC-AAATTCTAATCGACAACCTTGAAAAAGCAATTGAGGTATTTGGTTGTGTGC-TGATTTCCCAAAAAATAAAACCTTGGTTTTATTT-GGATTAAGTTGAAG-----------T--AAC---TA-GTC--------CTCAGACCA-TTTTTCCAAT-ATT
gi|12 : ATTTAA-ATAC-AAATG-T-ATAAA---T--------------A-GTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-ATTT-GAACTG---CAG--AAAAAAA-ATT-ACAG-T-T-AA------TAAT--C--A--TAATGCAA-G--TTTTCA-T-GTCCCCAAAGCAAAG-TA-TT--TGT----ATCTATAATAGATAACTC---T--TCTAA-AGC-AAACATATTGT-CAAACAAAA--TGTCTT-GC-ATTAGA------TTTTTA-CA--AGT---AA-AGAAAAA-A---GG-TAGGC--A--TC----TTCT--TG-TTTTC-----CA---ATAAACAATTTAGGTGTG-TCGATAATGTTTTTTCT-A--AACAAGT----CA-TA--ATTTAAT-ACAC-ct
gi|13 : ATCTAA-ATAC-AAATG-TCATTGAATAT--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGATTAATATAG-TTTTGGAACTG---CAG--AAATA---TTTTACAGTT-T-AA------TA-T--C--A--TAATGCAACGT-TT--CATT-GTCCCCAAAGCAAAG-TA-TT--TGTATAGATCTATGATAGATAACT---CT--TCTAA-AGC-AAACAATTTAT-CAAACATAACATttt
gi|14 : T-TTTGC-GTCCTA--TGATCGATATAAATAACCTATAAACCA--CTGTAGAAGATTACC-A-GA-TATATCATACG-TTTGTAATTTAA--ATATGAGAGCACTA--TGCCA----CACTTTGTCAAATG-CTTT-T-G-ATAG-ATCAC---A-----------------------A-AAGG-C-CATAAAGCACGATTTACCGTCATCGATGTTTTGGACGATGTTAAGGTACA----TG-TATATTT-TAAGAAGCTGtgaattttatttaaggtctctacacataatacaaacaaat
gi|15 : cagatccttacgA-----A--ACCA-TNNNNN---NNNNTTATTAGAAAAGG--TGAGACCAAGATGTTT-----G--TAA-GAAATTAT-TTCTAATTGACAATTTTTAACATGCAGTC----------ATTATGACT-TGCCTTGTAAAAGAATAAAACCATAGTTTTATTA-AGATTAAATTTCAA-----------T--ATC---CA-TTC--------TTCA-------------AGT-ATTTT-GA-GATCGTGATT-Atat
gi|16 : tgatttgccttgtaaaagaataATATAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAA-TTTT-GAACTG---CAG--AATTTTT-TTTTACAG-T-T-AATACATGTA-T--C--A--TAATGCAA-GTTTT--CA-T-GTCCAC-AAGCAAAG-TA-TT--TGT----ATCTATAATAGATAA
gi|17 : -CATACGGTGTG-TTTATAATTTGA--AAATGAGGCTCCCA--AGCCA----TACTCTATCAAAAT-C-TT-T-GGAAAA-ATCAC---AAAAATAAATAAATAGTGGTAAATA-AAAATC-CACACGACACAATTTACT---ATCCACATTTTGAAC-ATTTG-------AACTTTG-TATATTTGTAATAA-TTGAT-AACCGTAA
gi|18 : ATCTAA-ATAC-AAATG-T-ATTGA---T--------------ATATAATA-AGTAT--ACTAAA--T-TATATATAAATTG-ATAAATT-A-TTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAA-ATTGGCAG-T-T-AA------TA-T--C--A--TAACGCAA-G--Taatga
gi|19 : taAAATTGA-CTGATTGACA-AATATTTGAATATAT----CAT-TGGG----AAAACATTCCG--TTTTGC-AAATGTCA-TCTGGAA---------------CG---AAATTTCGAG--TA-TA--CATT-TT--GATGAT--ATGCGATTTT-TTA-AAAT---TTGTAGTG-CTATA-TT-GA-----ACATTT---------Tagattggtaatcccagcagcacacattttg
gi|2 : taa-GT-ATTA--ACAT-TTTTTTA-CATGACTGTAAA-AGAAAAACGT--GG-AAGGCC-AGTTCACTGTTCTATCG-TTTCC-----CAC--ATAAACAA-TTAGGTGTG-TC-ATCATGTTTTTTCT-A---ACAGTT----CA-TGTCATTTAAT-ACACGAATTAAGCCCGT--AAGT--TTTG--TT--TGAGATAATATTT-AACTGGCCGT---TTTTCCCAAACA-TTGA-AATTTTCTTTGG------AGC-GTGCTATTGAGTTGACAATATTAGATAT---GTCTTCT-TGCTAAATTGA-CTGAT-GACG-A-GATTTTGTTACCGAATTCAT-TTGG--TAAA-GCATT-CC--ATTTAC-AGATG--A-TCTGGAATGAAAGAATAT-TCTTT---AAATTTCG-GCTTC-TAACCT-T-TT--GGTATC--ATATACTTTTTCTT-CATT---TCG--GTG-CTGTC-TTTGA-----ACATTT---------TCCCT-A-A-ACTG---ACTATAGT-TCAC-ATAAA----ATG-AGGCAACTG-TGT----TATGATG-ATTTTCATACATTGTGATTTAATTTCGCTTTTCTTCTCCTATTCGTT-AAATGGTCCCAA-CTGTTT-AAGAGTAT-ATGATTTCTTTGATGTCATAATAGAT-AACCTGT--CCAATTCTTGCAGCATGTAGC-GAACTTTAGTTCTAATTTTTACAA-A-CTG-AATTGGAAACTCCATCCCATACCACAGAAGCATAATCTCT-ACCATATTGGTCTTTAACAAAC-GT-ATATACA-TTTTGACAGTTTATCTCTACAC-GAGTAAACTTTGAGTTTTTATAATCAAT-CTAACTTTT--TACTAAAGGCAGGATTTACAAAATATTAATCAATCGTA-ACAGACAGG--ACCA-TTTAAA---AT--TCATCTGAAAAAT--C-AAACCAAGATGCTTAAT--G--CGATGAAACAAT-TTCTAAATTACAACCTGAAAAAAGCAGTTGAGGTATTTGGTTATGT-C-TGATTTACC-AAAAATAAAACCTTGTTTTGATTTGGGATTAAATTG--G-----------T--AAC---CA-ATCT-------TTCAGACCATTTTTTCTAAT-ATTGCTAA-AAGCATGATTAAAGT-A-GGCACATTCTA-GTTGTTTA-A--ATT-C----TTA-CCG-CATATATG-GAATT--GAA-T-GTCATCCAGCATATTACCGA----CAAAGAGATAATAGTTATGAAGTGAGCAACATCGTTGGACATGAGTGTTA--TCAAAAACAACAAATGGAC-CAAGGACGGAACCTATGTGGCACTCCAGCATTA-ATTT-T-CA--AACTG------TGTTG-----AT-ACAAATCTTTATACA-TAA--T-TTTGCTGTC-TAATTGAT--ATAGAA--AGTTT-TAAACCA--TTGAAAAAGATTT-C-A-CGTCATCGCGATCGTTTTGTAATTTGAAGAAAGAAGACCCTCAT-TGCCAGAACGACTCTGTCAAATGCC-TT-T-G-ACAGAATCGCCATA-----------------------A-AAAA---CATACcttattg
gi|20 : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAG---TTACAG-T-T-AA------TA-T--C--A--TAATGCAA-G--TT--atattgactttt
gi|22 : aGATGCCAAAATAGACAAACCAGTTAC-AATTGTTGCAGCGTGTAATTGAATTTT--TTCTA-TTTTTTTAATATCTGAAATTGCACA-TCCAt
gi|23 : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-CATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AG
gi|24 : taTTC--ATTTTT-GAACGACA-TCTGGAATGAATGA-T-T-----------ATTTTGTG--TT-TA--CA-TGTT--AGAAAT--ATATAGTTGT-CTT-CATT---
gi|25 : T-CAAACATAACATGTCTT-GC-ATTATAATAA--GTTTTA-CG--AAT---AA-AGCAACT-GT--GA-TAAGC--A--
gi|26 : GACCCTCA--TGCCA----GACTCTGTCAAATG-C-TT-T-G-ACAG-ATCGC---A-----------------------A-AAAA-C-CATAc
gi|27 : C-AATTATGCC--T--CAAC--TTTG--CG--TAA-ATAATATTT-AACAAGC-G----TTTTCC-AAA-A-aa
gi|28 : -TT--TGT----GTCTATAAGAGATAACTC--A---TCTAA-AGC-AAACAA
gi|3 : TAATATAC-AAATA-G-AG-AA---T--------------ATATGATA-AGTGCGCACTGAA--T-TTTA---AAGTTG-ATAAATC-AAGTA-AAATCGTA--TTTTGACATTACATATAT--ATATAG-TTT--GAACTG---CAG--AAAAAAT-TTTTGCAG-T-TTAA------CA-T--CTCA--TGACGTAA-G--TTA-CA-T-GTCCCCAAAGTAAAG-TA-TT--TGT----GTCTATAAGAGA-AACTCATCT--TTTAA-AGT-AAACAATATGA-CAAACCAAACTTGTCTT-GC-ATTAGAATAC--TTTTTA-CA--AAT---AAGAGAAAAA-GT--GGTTAAGC--A---C----TTCT--TG-TTGTC-----CAC--ATAAACAA-TTAGGTGTG-TCAATAATGTTTTTTCT-A--TACAAGT----CA-TA--ATTCAAG-ATAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATGT-AATAGGC-GT---TTTCCC-AAA-A-TTGA-AATG--CTTTGG-----AGGCAGT-CTA-TT--TTGACAATATTAGATAT---G-CGTCT-T-CGAAATTGA-TTGATTGACG-AAGATTTTGTTACTA----CAT-TTGG--TAAATTCATGTTCAGATATAC-AAATAGCA-TCCGGAATGAAAGA-T-T-TCTTGGTTAAATTTCAAG--TC-TA--CA-T-TT--GGTAACTGATATAATTTT-CTTGCGTT---TCG-AGTG-CT-TA-TTGGA-----AAACTTACTTTTGCATTTCT-----ATTGTCAAATAT-GT-CCATGGTAAA-TATATGTAGGTA-CTG-AGTAT-CTATCATGCGTTca
gi|4 : TAATATAC-AAATA-G-AG-AA---T--------------ATATGATA-AGTGCGCACTGAA--T-TTTA---AAGTTG-ATAAATC-AAGTA-AAATCGTA--TTTTGACATTACATATAT--ATATAG-TTT--GAACTG---CAG--AAAAAAT-TTTTGCAG-T-TTAA------CA-T--CTCA--TGACGTAA-G--TTA-CA-T-GTCCCCAAAGTAAAG-TA-TT--TGT----GTCTATAAGAGA-AACTCATCT--TTTAA-AGT-AAACAATATGA-CAAACCAAACTTGTCTT-GC-ATTAGAATAC--TTTTTA-CA--AAT---AAGAGAAAAA-GT--GGTTAAGC--A---C----TTCT--TG-TTGTC-----CAC--ATAAACAA-TTAGGTGTG-TCAATAATGTTTTTTCT-A--TACAAGT----CA-TA--ATTCAAG-ATAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATGT-AATAGGC-GT---TTTCCC-AAA-A-TTGA-AATG--CTTTGG-----AGGCAGT-CTA-TT--TTGACAATATTAGATAT---G-CGTCT-T-CGAAATTGA-TTGATTGACG-AAGATTTTGTTACTA----CAT-TTGG--TAAATTCATGTTCAGATATAC-AAATAGCA-TCCGGAATGAAAGA-T-T-TCTTGGTTAAATTTCAAG--TC-TA--CA-T-TT--GGTAACTGATATAATTTT-CTTGCGTT---TCG-AGTG-CT-TA-TTGGA-----AAACTTACTTTTGCATTTCT-----ATTGTCAAATAT-GT-CCATGGTAAA-TATATGTAGGTA-CTG-AGTAT-CTATCATGCGTT
gi|5 : TAATATAC-AAATA-G-AG-AA---T--------------ATATGATA-AGTGCGCACTGAA--T-TTTA---AAGTTG-ATAAATC-AAGTA-AAATCGTA--TTTTGACATTACATATAT--ATATAG-TTT--GAACTG---CAG--AAAAAAT-TTTTGCAG-T-TTAA------CA-T--CTCA--TGACGTAA-G--TTA-CA-T-GTCCCCAAAGTAAAG-TA-TT--TGT----GTCTATAAGAGA-AACTCATCT--TTTAA-AGT-AAACAATATGA-CAAACCAAACTTGTCTT-GC-ATTAGAATAC--TTTTTA-CA--AAT---AAGAGAAAAA-GT--GGTTAAGC--A---C----TTCT--TG-TTGTC-----CAC--ATAAACAA-TTAGGTGTG-TCAATAATGTTTTTTCT-A--TACAAGT----CA-TA--ATTCAAG-ATAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATGT-AATAGGC-GT---TTTCCC-AAA-A-TTGA-AATG--CTTTGGAGGCAGTGCAGTGCTATTT--TTGACAATATTAGATAT---G-CGTCT-T-CGAAATTGA-TTGATTGACG-AAGATTTTGTTACTA----CAT-TTGG--T-AAATCA-TTCC--ATTTAC-AAATGGCA-TCCGGAATGAAAGA-T-T-TCTTGT--AAATTTCAAG--TC-TA--CATT-TT--GGTAAT--ATATAATTTT-CTT-CATT---TCG-ATTG-CTGTA-TTGAAAACTTACTTTT---------GTCAT-A-CTATTGTCAAATAT-GT-CCA-TGTAAA-TATATGTAGGTA-CTGTAGTATACTATCAT
gi|6 : ATTTAA-ATACCAAATGCT-ATTAG---T--------------ATGTAATGCAG-AT--ACTATA--TATATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGATA-ATATAG-ATTT-GAACTG---CAG----AAATT-TTTTACAGTT-T-AA------TA-T--C--ATTTAATGCAA-GTTTT--CA-TGGTCCCCACAACAAAGTTATTT--TGT----ATCTATAATAGATAACTCT-TT--TCTAA-AGCAAAACAACTTGTCCAAACATAACATGTCTT-GCAATTAGAATA--TTTTTTACCA--AGT---AA-AG-AAAA-GTTCGG-TCGGC--A--TCT---TTCT--TGTTTTTC-----CACCAATAAACAA--TAGGTGTGTTCGATAATGTTTTTTCTAA--AACAAGC----CATTA--ATTTAAT-ACAC-ATTTATGCC--TAACGTT--TTTGTTTGGTTGA-ATAATATTTAAACTGGC-G----TTTTCC-AAA-ATTTGAGAATG--CTTT-G-----GAGCA-TGCTATTG--TTGACAATATTAGATATTACG-CTCTT-T-CTAATTTGAGCTGATTGACG-AAGA-TTTGTTATCT----CAT-TTGGGTTAAAAGCA-TTCC--ATTTAC-AGATGACATTCTGGAATGAAAGA-----TCTTA---AAAATTCG-G--TC-TA--CA-T-TTTCAGTATT--ATATAATTTT-CTT-CATTTCGTCG-AGTGCCTGTAGTTGAA-----ACATTT---------TTCCT-ATA-ATTG---ACTATAGTATCACCATAAAGTAT
gi|7 : taTTTCTAAGTTAAGCC-AAGTCTT--TA-TTC--GCATTATTTAC--AATGTT-ATTAG-CATACATA-----GTGACCAGCTTAAATTAAT--TCATTCGTAAAAG--TAAGACCAAGGTGCTTTGT--GAACAGTAAAAT-AT-G-CAGGCTGACATTGTTGAAACATTACTT----TTTTTTTTTTTGGTCATGGT------AAAAGTATTGATTTTGTTTTATTC-AAATTAATTTGAAAATTAATTTATTTCAAAT---TA-ATCACAAGAAGTTTGGACCA-CTCATCTAAG-ATTAT-TA-GATCATGATT-ATTT-T-A----AC---ATGTTGTTTA-ATCACTGCAACATTATACGACG-ATCTTTGAATA--GAATT-GTCAT-CTGCAAATAATCTA----CACATTGACAACA--TAC--TGTCTGATACAACGTA-AATATA-----GATTTTAAAAAT-GC-AGAGGTCTC-AGGACTGAGCCT-TGGGGAACACCAACAGTATG-CT-T-C-----C--------GGTTGAAGAAAT-AGAAATGTATATATA-TA-------TAC-GTC--A--CTAT--ATATAT-TTGTTC-TCTATTA--TTTAAATA-ATTT------G-TAAACT-TATG-GGCTTAGTTTGA--AAAAAAGGCCTTTA--TTTCA----CACTTTGTCGAAGG-C-TTATAG-AAGG-GTCAC---A-----------------------A-AAAT-C-CATACGAAATAATCTTCCCTCAT
gi|8 : A---T--------------ATG-AATA-GGTCC--ACTA-A--T-TATA---AAGTTGGATACATC-AAGTATAA-TC-TAAATTT-GACAT-----ACATT-ATGTAAATTTT-GAACTGATGCAG--AAAAA-C-TTTTGCAA-TGT-AA------CA-CAAC--A--TAACATAG-GG-TT--TA-T--TTCCCAAATAGAAG-TA-CTAGTGT----ATCTATAG--AATAATTC--GT--GTTAATAGC-AA-CAATTTGT-CAAACAAAACGTGTCTTGGC-ATTA-AATACTTTTTTTA-C---AAT---AA-AG---AA-GT--GA-TTAGCATA--TC----TTCT--GG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG--CAATAATGGTTTTTCT-AATAACAAATAGAATA-TA--ATTTAGGAACAC-AAGT---TC--T--CA-CTTTTTG--TGT-TGG-ATAATATTT-AA-AGAT-ATGACTTATCC-AAA-A-TTGA-AATG--CTTT-G-----GAGCAGTGCT-TTT--TTGACAA-ATTAGATAT---G-CTTCTCT-CGAATGTGA-CTGATTGACA-AAGA--TTGTTAACT----TGTGTTTG--TGAAACTCGTTCC--ATTTACTAAAT-GTA-TCCAGAAGTAAAGA-T-TCTCTTG---TAATTTCGAG--TCTTA--CA-T-ta
gi|9 : atatacaatagaaaatagtataataaagactAG-----------T--AACGCCCATGTA--------TT-AGACCAGTTTTTTTAATCATATC-AA-GGTCATTTGT-AAGTTA-A----AGAGAATG--GTTTACA--ATA-C--CATTATCAA-TG-ATAGC-AAATAAGGAGAT-GTAAT-CAGCAAATAATCGAATTTTATTAGGA----A--TAT--CATTGGTGACGTCATT-GATATA-----AA--GTAAGGACAAG-AATAGAC-CTAGTACTGACCCC-TGAGGTACCCCATCATTA-A-TTATACAGTAATATTTTCTTTGTAG-----AT-GTAAAACCTTCTACAGTTA-CTCTTTGCTGTT-TC--TGAG--TTA-AG-TAGTTT-TAATCCAGCTT--AATATATTACCTA-CA-AAACCCA-ACC-TCTGAAGTTTAT--GAACAAAA--CTTAAGTGCCA----AACTCGGTTAAACG-C-TT-T-G-GGAA-AT------A-----------------------ATAAAA-CGAATAT--C----TTTCCCTTTATCAAGACTTTGAATTATTTT-------AT---TA-CACATTT-CTACCAGCTGGT-ggt
blockSeqs : T C TC T ATA TAACGATAGTGGAT G GC T AG A TAT G G C T A G AA T TACAT TA A TG ATG GA AA T G T TACATG A AA TC TT C TT TT T G T T AG ATAG T T CTCG T A C T A G A G CTT C TG GTA G A C TC T CAGTTCACTG AT T ACATA CA T T G A ATA AGAA T TC GA G T CG AA TT TT GT G A C TGAC C C T G TT G AGGCAG G T AG TAC T T C G G . T GAATT G GT A AA T AG T T T ATAT GTT A CT T AC TT TC TG T G TCG T C A G T AACTT ACTTTTGCA ACT TC C A A TG G A TA ATA C C A T T A . T G . . . T A T T CA C T AG A A T T A A C AT ACC TA . T T TA C T C T . C AG AA A T C GACAGG G C TTAATT AATC AATATG T A GA A GTCA CCCA TG A ATTAATTTATTTCA GCC T ACAAGAAG C T C T TA . A AGGCACATTCT T T ATC GCAACA T CAT TT AAG TT C T ATTT A GA T GT GAA GA CA G AGTGTTA A A CA G G A T T ATTATACAGTAATATTTTCTT AAGAA . G ACTC T TAAT CG T AT A A GC GT A G ACCTACA A AT T AG T AG GAACG C T A A G T A AAAAATAAATAAATAGTGGTAAAT T TC A ACG A G G G G AAGGTACA . G G .
blockSeqs : T . CT A . . C GC T . . . A . . . A G . T TACAT A . T . . AA T . T . . . TC . . TT A . . . . . . T T ATCT . . . A A . . G AA . . . G A . . T ATATC . . . . . . G . T . . . G . A . . . . T . . . T . . . . . G G G T . . . G . . . . T T . . A TT T AG . A . TTC GTT T . . . TG . TG . G . . . G . G . ACTTTTGCA ATA TC A A . TG . . T AT C . A . A C . . . T . . A G . . A . . . . C . T C T . . . . . . C GTG . N NNNNT GTG TGTGAA A . GA A TGC GTAA T C T . . T C G . G G . . TAAAGAGA T T CA CCA T ACG G T AT . A . C TT C . T CT AT . GATT A . TC G T . G A ATTTTCAAACTG . . . AT T CTA . G T . A . GA A G ACCAGA A GT . . T T C . . . . . A . CATA . CG G ACA A C C T T AACTT . . G .
blockSeqs : T . T T . . . GC T . . . G . . . A G . T TACAT T . T . . TT . . T . . . TC . . T A . . . . . . T T ATCT . . . T A . . T TT . . . G A . . T ATCT . . . . . . A . A . . . T . A . . . . . . . . T . . . . . G A G T . . . G . . . . T A . . A TT T . . G . TT T A . . . TT . . . . . . . G . G . . AA TC A . . CC . . A AT . . C . . . . . . . . . . . G . A ATT GTA AATG . . . T ACT ACC A A T . . . C . . A T . . TAAC . . A C . TG C A T . A . T AG . . C TG TG . AA . . CT T T . A C TGCTTCC . . . . . TC . T T . C . TA T T TCACGT C GA . . G . T . . . . . C . A . C G ATA T T A . T AT . . .
blockSeqs : . . T T . . . . T . . . G . . . . . . . . . . T . . AA . . . . . . . . . G A . . . . . . T T ATCT . . . T T . . G A . . . . C . . . ATC . . . . . . A . T . . . T . A . . . . . . . . T . . . . . G A G T . . . G . . . . T A . . A AT T . . G . TT . A . . . T . . . . . . . G . G . . . . A . . C . . A . A . A AT TC G . . . . TC . C . T . . . T . . T A . . . A . . . . A . . T . TG A T . . A . G . . . . . C . A . C . . C .
blockSeqs : . . T T . . . . A . . . G . . . . . . . . . . T . . AG . . . . . . . . . . . . . . . . . G T TTT . . . A T . . G C . . . . A . . . ATC . . . . . . A . T . . . G . A . . . . . . . . T . . . . . . G G . . . . T . . . . T A . . G AG G . . G . TT . A . . . T . . . . . . . . . G . . . . C . . T . T . . . . . . C A . . C . C . . . . . A . A . C
blockSeqs : . . T T . . . . T . . . G . . . . . . . . . . T . . AT . . . . . . . . . . . . . . . . . G T CT . . . A T . . G C . . . . A . . . AC . . . . . . G . T . . . G . A . . . . . . . . T . . . . . . G . . . . . T . . . . . T . . . AC . . . A . TT . A . . . T . . . . . . . . . . . . . A . . . . . G . A . .
blockSeqs : . . T T . . . . T . . . . . . . . . . . . . . T . . AT . . . . . . . . . . . . . . . . . G T GT . . . A A . . G C . . . . A . . . AC . . . . . . A . A . . . G . A . . . . . . . . . . . . . . . . . . . . T . . . G . . . G . . . . . . . T . . . . .
blockSeqs : . . T T . . . . A . . . . . . . . . . . . . . T . . AT . . . . . . . . . . . . . . . . . G . T . . . T G . . . T . . . . . . . . AC . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . T
blockSeqs : . . G . . . . . A . . . . . . . . . . . . . . . . . TT . . . . . . . . . . . . . . . . . T . A . . . A . . . . . . . . . . . . . .
blockSeqs : . . G . . . . . A . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . .
blockSeqs : . . G . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqCons : AN* ATCT** C** ATC******** T** A**** TC A* AT* GTG***** TA*** CCG******
originalCons : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AAGTTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAN-TTTTGCAG-T-T-AA------TA-T--C--A--TAACGCAA-G--TT--CA-T-GTCCCCAAAGCAAAG-TA-TT--TGT----GTCTATAATAGATAACTC--CT--TCTAA-AGC-AAACAATTTGT-CAAACANAACATGTCTT-GC-ATTAGAATAC-TTTTTTA-CA--AAT---AA-AGAAAAA-GT--GG-TAGGC--A--TC----TTCT--TG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG-TCGATAATGTTTTTTCT-A--NACAAGT----CA-TA--ATTTAAG-ACAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATTT-AACAGGC-GT---TTTTCC-AAA-A-TTGA-AATG--CTTTGG-----GAGCAGTGCTATTT--TTGACAATATTAGATAT---G-CTTCT-T-CGAAATTGA-CTGATTGACG-AAGATTTTGTTACCN----CAT-TTGG--TAAAANCATTTCC--ATTTAC-AAATGGCA-TCCGGAATGAAAGA-T-T-TCTTG---AAATTTCGAG--TC-TA--CA-T-TT--GGTAAT--ATATAATTTT-CTT-CATT---TCG-AGTG-CTGTA-TTGGA-----ACATTT---------TTCCT-A-A-ATTGTCAANTAT-GT-CCACCGTAAA-TATATGTAGGTA-CTG-AGTAT-CTATCATGCGTTTTCATACATTGTGATTTAATTTCGCTTTTCTTCTCCTATTCGTTCAAANGNTCCCAACCCGTTTCAAGAGTATAANGATTCCTTTGATGCCAAAATAGACAAACCGGTTACCAATTCTTGCAGCATGTAGCTGAACTTT--TTCTAATTTTTNCAA-ATCTGAAATTGNACA-TCCATCCCATACCACAGAAGCATA--TTCT-A--ATATTGGTCTT--ACAAAC-GT-ATATACATTTTTGACAGTTTATCTCTACANAGAGTAAA-TTTGAGTTTTCTTAATCAATCCTAACTTTT--TA-TAA--GCATGATTTAC--AATGTT-ATCAA-CGTACACA-----G--ACCA-TTTNAA---AT--TCATCTGAAAAAG--CGAGACCAAGATGCTTAAT--G--CGATGAAAC-AT-TTCTAATTGACAACCTTGAAAAAGCAGTTGAGGTATTTGGTTATGTNC-TGATTTACCAAAAAATAAAACCTTGGTTTTATTC-GGATTAAATTGAAG-----------T--AAC---CA-GTC--------TTCAGACCA-TTTTTCTAAT-ATTTC-GA-GATCATGATT-AAGT-A-A----ATTCTATGTTGTTTA-A--ATT-C--CATTATCCG-CG-ATATC-GAATA--GAATT-GTCAT-CAGCANATAACCGA----CANAAAGATAACA--TAT--CGTNAGNAACATCGTT-GACATA-----NA--TCAAAAACAAC-AATGGAC-C-AGNACTGAACCT-TGNGGCACTCCAGCATTA-A-TT-T-CA--AAC--------TGTTG-----AT-ACAAATCTTTATACA-TAA-CT-TTTGCTGTC-TA--TGAT--ATANAA-TAGTTT-TAAACCA--TTGAAAAAGATTTCC-A-CG-CATNCCGTACG-TTTGTAATTTGA--AAANAAGACCCTCA--TGCCA----NACTCTGTCAAATG-C-TT-T-G-ANAG-ATCGC---A-----------------------A-AAAA-C-CATACGACACGATTTNCCNTCATCGATATTTTGAACGATNTT-------A----TG-TATATTT-TAATAAGCTGGT-AACCGTAA
finalCons : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AAGTTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAN-TTTTGCAG-T-T-AA------TA-T--C--A--TAACGCAA-G--TT--CA-T-GTCCCCAAAGCAAAG-TA-TT--TGT----GTCTATAATAGATAACTCATCT--TCTAA-AGC-AAACAATTTGT-CAAACANAACATGTCTT-GC-ATTAGAATAC--TTTTTA-CA--AAT---AA-AGAAAAA-GT--GG-TAGGCATC--------TTCT--TG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG-TCGATAATGTTTTTTCT-A--NACAAGT----CA-TA--ATTTAAG-ACAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATTT-AACAGGC-GT---TTTTCC-AAA-A-TTGA-AATG--CTTTGG-----GAGCAGTGCTATTT--TTGACAATATTAGATAT---G-CTTCT-T-CGAAATTGA-CTGATTGACG-AAGATTTTGTTACCN----CAT-TTGG--TAAAANCATTTCC--ATTTAC-AAATGGCA-TCCGGAATGAAAGA-T-T-TCTTG---AAATTTCGAG--TC-TA--CAT--TT--GGTAAT--ATATAATTTT-CTT-CATT---TCG-AGTG-CTGTA-TTGGA-----ACATTT---------TTCCTA----ATTGTCAANTAT-GT-CCACCGTAAA-TATATGTAGGTA-CTGA-GTAT-CTATCATGCGTTTTCATACATTGTGATTTAATTTCGCTTTTCTTCTCCTATTCGTTCAAANGNTCCCAACCCGTTTCAAGAGTATAANGATTCCTTTGATGCCAAAATAGACAAACCGGTTACCAATTCTTGCAGCATGTAGCTGAACTTT--TTCTAATTTTTNCAA-ATCTGAAATTGNACA-TCCATCCCATACCACAGAAGCATA--TTCT-A--ATATTGGTCTT--ACAAAC-GT-ATATACATTTTTGACAGTTTATCTCTACANAGAGTAAA-TTTGAGTTTTCTTAATCAATCCTAACTTTT--TA-TAA--GCATGATTTAC--AATGTT-ATCAA-CGTACACA-----G--ACCA-TTTNAA---AT--TCATCTGAAAAAG--CGAGACCAAGATGCTTGTG-----CGATGAAAC-AT-TTCTAATTGACAACCTTGAAAAAGCAGTTGAGGTATTTGGTTATGTNC-TGATTTACCAAAAAATAAAACCTTGGTTTTATTC-GGATTAAATTGAAG-----------T--AAC---CA-GTC--------TTCAGACCA-TTTTTCTAAT-ATTTC-GA-GATCATGATT-AAGT-A-A----ATTCTATGTTGTTTA-A--ATT-C--CATTATCCG-CG-ATATC-GAATA--GAATT-GTCAT-CAGCANATAACCGA----CANAAAGATAACA--TAT--CGTNAGNAACATCGTT-GACATA-----NA--TCAAAAACAAC-AATGGAC-C-AGNACTGAACCT-TGNGGCACTCCAGCATTA-A-TT-T-CA--AAC--------TGTTG-----AT-ACAAATCTTTATACA-TAA-CT-TTTGCTGTCTA---TGAT--ATANAA-TAGTTT-TAAACCA--TTGAAAAAGATTCCG------CATNCCGTACG-TTTGTAATTTGA--AAANAAGACCCTCA--TGCCA----NACTCTGTCAAATG-C-TT-T-G-ANAG-ATCGC---A-----------------------A-AAAA-C-CATACGACACGATTTNCCNTCATCGATATTTTGAACGATNTT-------A----TG-TATATTT-TAATAAGCTGGT-AACCGTAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTAACAGTAATTTCTATTTCAGCAACGCTATTTGATGAATATTGGAAAGAATTATCAACTGCAAAAAGTCTGCACATAGACAGCATTTTGTCTGAAAC
Alignments
lowQualScore : 1 11111111111111 11 1 22222 11 1 11 11 11 111 1111 1 1 22222222222 11111 111 11 111111 111 11111 11 222 11 1 11111 555555555555555555555 11 1 11 11 111 1 1 1 1 1 1 1 1 1 11 11 1 1 11 2222 11 1 1 1 11 1 11 11 1 1 22222222 11111111 22222 22222 11 11 1111 11 33333333333333 111 33333333 1 11 5555555555555 1111 222222 1111 11 222 111 1 2222 11 111 1 333333333 1 222 1 5555555555555555555555555 22222 1 1 22222 1 11111 11 11 555555555555 11 11111 1 555555555555555555555555555 1 1 555555555555 1 1 1
lowQualScore : 0 3 333 6 555 88888888888888 6 22 2 44 3 555 8 3 3 0 3 9 9 44 9 33333 11 3 66 555 44 999 6 3 0 999999 3 44 33 44 3 55 55 4 4 4 3 55 7777 4 4 444 4 4 4 1 2 4 4 1111 4 55 777 2 8 4 55 2 55555555555 66 4 11111 66 4 4 2 4 111 9999 4 66 55 4 2 66 66 0 66 66 00 4 0 4 0 4 9999 8 4 4 5 66 8 222222 2 5 77 000 5 1 5 5 0 5 5 3 11111 5 66 2 44 6 22 4 3 4 88888 000 6 66 4 66 999 66 0 33 5 0 888 5 5 6 5 7 44444 555555555555555555555 5 88 1 3 6 33 6 0 0 8 44 999 2 5 5 5 5 5 5 1 1 5 5 5 1 7 3 7 44 6 7 88 7 1 3 7 3 1 0 88 2222 88 3 3 7 88 3 3 2 3 33 0 33 33 0 0 2 44444444 8 1 77777777 88888 99999 11 0 8 8 0 00 1 1111 0 7777 0 22 5 11111111111111 111 6 00000000 1 3 6 1 44 8 8 1111111111111 3 3 4444 999999 3 2222 44 333 000 0 1 1111 1 22 7 0 33 888 22 22 0 000000000 3 0 666 1 9 0 0 1 0 1 0 6666666666666666666666666 55555 0 0 0 55555 0 55555 11 8 88 8 1 11 66 1 5 888888888888 1 5 6 99 1 0 33 33333 0 5 5 1 5 1 5 0 333333333333333333333333333 5 888 6 333 1 8 2 0 2 1 444444444444 0 0 0 2 3
lowQualScore : . . ... . ... .............. . .. . .. . ... . . . . . . . .. . ..... .. . .. ... .. ... . . . ...... . .. .. .. . .. .. . . . . .. .... . . ... . . . . . . . .... . .. ... . . . .. . ........... .. . ..... .. . . . . ... .... . .. .. . . .. .. . .. .. .. . . . . . .... . . . . .. . ...... . . .. ... . . . . . . . . ..... . .. . .. . .. . . . ..... ... . .. . .. ... .. . .. . . ... . . . . . ..... ..................... . .. . . . .. . . . . .. ... . . . . . . . . . . . . . . . . .. . . .. . . . . . . . .. .... .. . . . .. . . . . .. . .. .. . . . ........ . . ........ ..... ..... .. . . . . .. . .... . .... . .. . .............. ... . ........ . . . . .. . . ............. . . .... ...... . .... .. ... ... . . .... . .. . . .. ... .. .. . ......... . . ... . . . . . . . . ......................... ..... . . . ..... . ..... .. . .. . . .. .. . . ............ . . . .. . . .. ..... . . . . . . . . ........................... . ... . ... . . . . . . ............ . . . . .
lowQualScore : 0 3 777 7 444 11111111111111 2 77 8 22 1 444 2 1 1 2 1 2 2 22 2 11111 22 3 66 888 66 000 7 3 0 666666 3 66 88 66 3 88 99 0 0 0 6 00 7777 2 4 333 0 0 0 0 7 0 0 8888 0 55 000 0 1 0 55 0 44444444444 11 4 11111 11 4 4 7 4 444 4444 4 11 66 0 2 11 11 1 11 11 66 4 7 4 9 4 7777 9 4 4 0 99 8 888888 5 0 99 000 7 3 7 7 7 0 0 2 66666 0 99 0 66 2 22 4 7 4 88888 000 4 11 4 11 888 99 8 88 0 0 888 7 7 6 7 9 33333 333333333333333333333 7 00 0 3 7 00 7 8 8 0 00 222 5 0 5 5 5 5 0 0 0 0 0 5 0 3 7 3 00 7 3 33 3 0 3 3 2 0 0 33 7777 33 3 3 3 33 3 2 5 2 88 0 88 88 0 0 5 22222222 0 0 00000000 44444 66666 00 8 0 0 8 66 0 0000 8 4444 8 66 6 88888888888888 777 7 88888888 0 3 7 0 44 0 0 0000000000000 2 2 8888 555555 2 0000 22 555 888 0 0 2222 0 55 0 2 88 000 22 22 0 888888888 2 0 222 0 2 8 0 0 2 2 2 5555555555555555555555555 00000 0 2 0 88888 6 66666 00 8 88 0 0 00 00 4 0 000000000000 0 2 7 22 0 7 66 11111 3 7 7 4 7 0 7 4 999999999999999999999999999 7 666 4 666 0 8 8 8 8 0 888888888888 0 0 8 5 3
consensus : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AAGTTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAN-TTTTGCAG-T-T-AA------TA-T--C--A--TAACGCAA-G--TT--CA-T-GTCCCCAAAGCAAAG-TA-TT--TGT----GTCTATAATAGATAACTCATCTTCTAA-AGC-AAACAATTTGT-CAAACANAACATGTCTT-GC-ATTAGAATA-C--TTTTTA-CA--AAT---AA-AGAAAAA-GT--GG-TAGGC--A--TC----TTCT--TG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG-TCGATAATGTTTTTTCT-A--NACAAGT----CA-TA--ATTTAAG-ACAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATTT-AACAGGC-GT---TTTTCC-AAA-A-TTGA-AATG--CTTTGG-----GAGCAGTGCTATTT--TTGACAATATTAGATAT---G-CTTCT-T-CGAAATTGA-CTGATTGACG-AAGATTTTGTTACCN----CAT-TTGG--TAAAANCATTTCC--ATTTAC-AAATGGCA-TCCGGAATGAAAGA-T-T-TCTTG---AAATTTCGAG--TC-TA--CA-T-TT--GGTAAT--ATATAATTTT-CTT-CATT---TCG-AGTG-CTGTA-TTGGA-----ACATTT---------TTCC--T--A--A-TTGTCAANTAT-GT-CCACCGTAAA-TATATGTAGGTA-CTG-AGTAT-CTATCATGCGTTTTCATACATTGTGATTTAATTTCGCTTTTCTTCTCCTATTCGTTCAAANGNTCCCAACCCGTTTCAAGAGTATAANGATTCCTTTGATGCCAAAATAGACAAACCGGTTACCAATTCTTGCAGCATGTAGCTGAACTTT--TTCTAATTTTTNCAA-ATCTGAAATTGNACA-TCCATCCCATACCACAGAAGCATA--TTCT-A--ATATTGGTCTT--ACAAAC-GT-ATATACATTTTTGACAGTTTATCTCTACANAGAGTAAA-TTTGAGTTTTCTTAATCAATCCTAACTTTT--TA-TAA--GCATGATTTAC--AATGTT-ATCAA-CGTACACA-----G--ACCA-TTTNAA---AT--TCATCTGAAAAAG--CGAGACCAAGATGCTT-A---TG--CGATGAAAC-AT-TTCTAATTGACAACCTTGAAAAAGCAGTTGAGGTATTTGGTTATGTNC-TGATTTACCAAAAAATAAAACCTTGGTTTTATTC-GGATTAAATTGAAG-----------T--AAC---CA-GTC--------TTCAGACCA-TTTTTCTAAT-ATTTC-GA-GATCATGATT-AAGT-A-A----ATTCTATGTTGTTTA-A--ATT-C--CATTATCCG-CG-ATATC-GAATA--GAATT-GTCAT-CAGCANATAACCGA----CANAAAGATAACA--TAT--CGTNAGNAACATCGTT-GACATA-----NA--TCAAAAACAAC-AATGGAC-C-AGNACTGAACCT-TGNGGCACTCCAGCATTA-A-TT-T-CA--AA--------C--TGTTG-----AT-ACAAATCTTTATACA-TAA-CT-TTTGCTGTC-TA--TGAT--ATANAA-TAGTTT-TAAACCA--TTGAAAAAGATTAC--CCG---C-ATACCGTACG-TTTGTAATTTGA--AAANAAGACCCTCA--TGCCA----NACTCTGTCAAATG-CTT-T-G-ANAG-ATCGC---A-----------------------A-AAAA-C-CATACGACACGATTTNCCNTCATCGATATTTTGAACGATNTT-------A----TG-TATATTT-TAATAAGCTGGT-AACCGTAA
Reference ( family-339 ) : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AAGTTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAN-TTTTGCAG-T-T-AA------TA-T--C--A--TAACGCAA-G--TT--CA-T-GTCCCCAAAGCAAAG-TA-TT--TGT----GTCTATAATAGATAACTCATCTTCTAA-AGC-AAACAATTTGT-CAAACANAACATGTCTT-GC-ATTAGAATA-C--TTTTTA-CA--AAT---AA-AGAAAAA-GT--GG-TAGGC--A--TC----TTCT--TG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG-TCGATAATGTTTTTTCT-A--NACAAGT----CA-TA--ATTTAAG-ACAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATTT-AACAGGC-GT---TTTTCC-AAA-A-TTGA-AATG--CTTTGG-----GAGCAGTGCTATTT--TTGACAATATTAGATAT---G-CTTCT-T-CGAAATTGA-CTGATTGACG-AAGATTTTGTTACCN----CAT-TTGG--TAAAANCATTTCC--ATTTAC-AAATGGCA-TCCGGAATGAAAGA-T-T-TCTTG---AAATTTCGAG--TC-TA--CA-T-TT--GGTAAT--ATATAATTTT-CTT-CATT---TCG-AGTG-CTGTA-TTGGA-----ACATTT---------TTCC--T--A--A-TTGTCAANTAT-GT-CCACCGTAAA-TATATGTAGGTA-CTG-AGTAT-CTATCATGCGTTTTCATACATTGTGATTTAATTTCGCTTTTCTTCTCCTATTCGTTCAAANGNTCCCAACCCGTTTCAAGAGTATAANGATTCCTTTGATGCCAAAATAGACAAACCGGTTACCAATTCTTGCAGCATGTAGCTGAACTTT--TTCTAATTTTTNCAA-ATCTGAAATTGNACA-TCCATCCCATACCACAGAAGCATA--TTCT-A--ATATTGGTCTT--ACAAAC-GT-ATATACATTTTTGACAGTTTATCTCTACANAGAGTAAA-TTTGAGTTTTCTTAATCAATCCTAACTTTT--TA-TAA--GCATGATTTAC--AATGTT-ATCAA-CGTACACA-----G--ACCA-TTTNAA---AT--TCATCTGAAAAAG--CGAGACCAAGATGCTT-G---TG--CGATGAAAC-AT-TTCTAATTGACAACCTTGAAAAAGCAGTTGAGGTATTTGGTTATGTNC-TGATTTACCAAAAAATAAAACCTTGGTTTTATTC-GGATTAAATTGAAG-----------T--AAC---CA-GTC--------TTCAGACCA-TTTTTCTAAT-ATTTC-GA-GATCATGATT-AAGT-A-A----ATTCTATGTTGTTTA-A--ATT-C--CATTATCCG-CG-ATATC-GAATA--GAATT-GTCAT-CAGCANATAACCGA----CANAAAGATAACA--TAT--CGTNAGNAACATCGTT-GACATA-----NA--TCAAAAACAAC-AATGGAC-C-AGNACTGAACCT-TGNGGCACTCCAGCATTA-A-TT-T-CA--AA--------C--TGTTG-----AT-ACAAATCTTTATACA-TAA-CT-TTTGCTGTC-TA--TGAT--ATANAA-TAGTTT-TAAACCA--TTGAAAAAGATT----CCG---C-ATNCCGTACG-TTTGTAATTTGA--AAANAAGACCCTCA--TGCCA----NACTCTGTCAAATG-CTT-T-G-ANAG-ATCGC---A-----------------------A-AAAA-C-CATACGACACGATTTNCCNTCATCGATATTTTGAACGATNTT-------A----TG-TATATTT-TAATAAGCTGGT-AACCGTAA
gi|1 : ATATAA-ATAC-AAATG-T-ATCAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAAATTTTACAG-T-T-AA------TA-T--C--A--TAATGCAA-G--TT--CA-T-GTCCCCAAAGCAAAG-TA-TT--C-T----ATCTAAAATAGATAATTC---TTCTAA-AGC-AAACAATTTGT-CAAACATAATATGTCTT-GC-ATTAGAATATT--TTTTTA-CA--AGT---AA-AG-AAAA-GT--GG-TAGGC--A--TC----TTCT--TG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG-TCGATAATGTTTTTTCT-A--AACAAGT----CA-TA--ATTTAAT-ACAC-AATATTGCC--T--CAGC--TTTG--TT--TG--ATAATATTT-AACTGGC-GT---TTTTCCAAAA-A-TTGA-AATG--CGTTGG-----GAGCAGTGCTATTT--TTGAAAATATTA-ATAT---G-CTTCT-T-CTAAATTGA-CTGATTGACGCAAGATTCTGTTACCT----CAT-TTGG--TAAAAGCATTTCC--ATTTAC-AGATGACA-TCTGGAATGAAAGA-T-T-TCTTA---AAAATTCGGT--TC-TA--CA---TT--GGTATT--ATATAATTTT-CTT-CATT---T-G-AGTG-CTGTA-TT-GA-----ACATTT---------TTCC--TAAA--A-TTG--AACTAT-TT-ATACCATAAA-TAT---TGGGCA-CTG--GT----TATGATGCATTTT-AT-CA-TGTGA-TTAATTTCGCTTTTCTTCTCCT-TTCGTTCAAAGGTTCCCAACCCGTTTCAAAAGTATAAAGATTCTTTTGATGCCAAAATAGACAAACCGGTTACC-ATTCTTGCAG-ATGTAGCTGAACTTT--TTCTAATTTTTCCAA-ATCTGAAATTGCACA-TCCATCCCATACCACAGAAGCATA--TTCTGA--ATATTGGTCTT--ACAAACTGT-ATATACATTTTTGACAGTTTATCTCTACAAAGAGTAAA-TTTGAGCTTTCTTAATCAATCCTAACTTTTTATA-TAA--GCATGATTTAC--AATATT-ATCAA-TGTACACA-----G--ACCA-TTTCAA---AA--TCATCTGAAAAAA--TACAACCAAGATGCTT-A---TG--CGATGAAAC-AT-TTCTAATTGACAACCTTGAAAAAGCAGTTGAGGTATTTGGTTATGTGC-TGATTTACCAAAAAATAAAACCTTGG-TTTATTT-GGATTAAATTGAAG-----------T--AAC---CA-GTC--------TTCAGATCA-TTTTTCTAAT-ATTTC-TATGATCATGATT-AAGT-ACAC---ATTCTATGTTGTTTA-A--ATT-T--C-TTATCCG-CA-ATATT-GAAT---GAATTGGTCAT-CAGCATATAACCGA----CAAAAAGATAACA--TAT--TATGAGGAACATCATT-GACATA-----TA--TCAAAAACAAC-AATGGAC-A-AGTAC-GAACCT-TGTGGCACTCCAGCATTA-A-TT-T-CA--AA--------C--TGTTG-----ATAACAAATCTTTATACA-TAACCT-TTTGCTGTC-TA--TTAT--ATAGAA-TAGCTT-TTAACCA--TTGAAAAAGATTTCCACCG---C-ATTCCGTACG-TTTGTAATTTGA--AAAGAAGACCCTCA--TGCCA----GACTCTGTCAAATG-CCT-T-G-ACAG-ATCGC---A-----------------------A-AAAA-C-CATACAACATGATTTTCCATCATC-ATATTTTTAACAATGCT-------A----TGATATGTTT-TAATAAGTTGGTAAACTGTAA
gi|10 : CTGA-ATGC-AATTG-T-ATTGA---TTAACGATAGTGGATATGTAATAGATTAC--ACT-TAAGT-TATA---AAGCTG-ATCAATTCAAGTA-AA-TC-TA--ATT-GACA-----------------G-GTTT-GAACAG---CAGGAAAAAAAA-T---GCTG-T-T-TA------CA-T--T--T--TGACGT---G--TT--AA-T-GGTCTAAAAGTAAAG-TA-TT--TGT----GTATATAATAGAT---TCCTCGTCTAA-AGC-AAACAATTTGT-TAAATATGACATGTCTT-GC-ATTAGAATA-A--ATTTTA-CA--GAT---AA-AGAAAAA-GT--GG-TAGGC--A---------TCT--TA-TTTTCACATACAT--GTAAATGC-TTTTGTGTG-T-G--AATTTATTTTCT-A--TGTA--T----C-------TTTAAG-ATAC-AATTTTACC--T--CAGC--TTTG--CG--TGA-ATTATATCT-GACAGCC-GT---TTTT-C-AAA-A-TTGC-AATG--CTTT-G-----GAGCAGTGtga
gi|11 : TGAAATTGAACA-TCCATCCCATACTATTGAAGCATA--TTCT-A--ACATTGGTCTT--ACAAAA-GTTACATACATTTTTGAAAGTTTTTCTCTACATAGAATAAA-TTTAAGTTT-CTTAATCAGTCCTAACTTTT--TA-TAA--GCATGATTTAC--AATGGT-ATCAA-TGTACACA-----G--ACCA-TTTCAA---AT---CATCTGAAAAAAATC-AGACCAAGATGCTT-AATATG--CGATGAAAC-AAATTCTAATCGACAACCTTGAAAAAGCAATTGAGGTATTTGGTTGTGTGC-TGATTTCCCAAAAAATAAAACCTTGGTTTTATTT-GGATTAAGTTGAAG-----------T--AAC---TA-GTC--------CTCAGACCA-TTTTTCCAAT-ATT
gi|12 : ATTTAA-ATAC-AAATG-T-ATAAA---T--------------A-GTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-ATTT-GAACTG---CAG--AAAAAAA-ATT-ACAG-T-T-AA------TAAT--C--A--TAATGCAA-G--TTTTCA-T-GTCCCCAAAGCAAAG-TA-TT--TGT----ATCTATAATAGATAACTC---TTCTAA-AGC-AAACATATTGT-CAAACAAAA--TGTCTT-GC-ATTAGA-------TTTTTA-CA--AGT---AA-AGAAAAA-A---GG-TAGGC--A--TC----TTCT--TG-TTTTC-----CA---ATAAACAATTTAGGTGTG-TCGATAATGTTTTTTCT-A--AACAAGT----CA-TA--ATTTAAT-ACAC-ct
gi|13 : ATCTAA-ATAC-AAATG-TCATTGAATAT--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGATTAATATAG-TTTTGGAACTG---CAG--AAATA---TTTTACAGTT-T-AA------TA-T--C--A--TAATGCAACGT-TT--CATT-GTCCCCAAAGCAAAG-TA-TT--TGTATAGATCTATGATAGATAAC---TCTTCTAA-AGC-AAACAATTTAT-CAAACATAACATttt
gi|14 : T-TTTGC-GTCCTA--TGATCGATATAAATAACCTATAAACCA--CTGTAGAAGATTA---CCAGA-T-ATATCATACG-TTTGTAATTTAA--ATATGAGAGCACTA--TGCCA----CACTTTGTCAAATG-CTT-TTG-ATAG-ATCAC---A-----------------------A-AAGG-C-CATAAAGCACGATTTACCGTCATCGATGTTTTGGACGATGTTAAGGTACA----TG-TATATTT-TAAGAAGCTGtgaattttatttaaggtctctacacataatacaaacaaat
gi|15 : cagatccttacgA-----A--ACCA-TNNNNN---NNNNTTATTAGAAAAGG--TGAGACCAAGATGTTT-G---TA--AGA--AATT-AT-TTCTAATTGACAATTTTTAACATGCAGTC----------ATTATGACT-TGCCTTGTAAAAGAATAAAACCATAGTTTTATTA-AGATTAAATTTCAA-----------T--ATC---CA-TTC--------TTCA-------------AGT-ATTTT-GA-GATCGTGATT-Atat
gi|16 : tgatttgccttgtaaaagaataATATAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAA-TTTT-GAACTG---CAG--AATTTTT-TTTTACAG-T-T-AATACATGTA-T--C--A--TAATGCAA-GTTTT--CA-T-GTCCAC-AAGCAAAG-TA-TT--TGT----ATCTATAATAGATAA
gi|17 : ---C-ATACGGTGTG-TTTATAATTTGA--AAATGAGGCTCCCA--AGCCA----TACTCTATCAAAAT-CTT-T-GGAAAA-ATCAC---AAAAATAAATAAATAGTGGTAAATA-AAAATC-CACACGACACAATTTACT---ATCCACATTTTGAAC-ATTTG-------AACTTTG-TATATTTGTAATAA-TTGAT-AACCGTAA
gi|18 : ATCTAA-ATAC-AAATG-T-ATTGA---T--------------ATATAATA-AGTAT--ACTAAA--T-TATATATAAATTG-ATAAATT-A-TTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAA-ATTGGCAG-T-T-AA------TA-T--C--A--TAACGCAA-G--Taatga
gi|19 : taAAATTGA-CTGATTGACA-AATATTTGAATATAT----CAT-TGGG----AAAACATTCCG--TTTTGC-AAATGTCA-TCTGGAA---------------CG---AAATTTCGAG--TA-TA--CATT-TT--GATGAT--ATGCGATTTT-TTA-AAAT---TTGTAGTG-CTATA-TT-GA-----ACATTT---------T--C--T--T--A-TTGagattggtaatcccagcagcacacattttg
gi|2 : taa-GT-ATTAACAT--T--TTTTTA-CATGACTGTAAA-AGAAAAACGT--GG-AAGGCC-AGTTCACTGTTCTATCG-TTTCC-----CAC--ATAAACAA-TTAGGTGTG-TC-ATCATGTTTTTTCT-A---ACAGTT----CA-TGTCATTTAAT-ACACGAATTAAGCCCGT--AAGT--TTTG--TT--TGAGATAATATTT-AACTGGCCGT---TTTTCCCAAACA-TTGA-AATTTTCTTTGG------AGC-GTGCTATTGAGTTGACAATATTAGATAT---GTCTTCT-TGCTAAATTGA-CTGAT-GACG-A-GATTTTGTTACCGAATTCAT-TTGG--TAAA-GCATT-CC--ATTTAC-AGATG--A-TCTGGAATGAAAGAATAT-TCTTT---AAATTTCG-GCTTC-TAACCT-T-TT--GGTATC--ATATACTTTTTCTT-CATT---TCG--GTG-CTGTC-TTTGA-----ACATTT---------TCCC--T--A--AACTG---ACTATAGT-TCAC-ATAAA----ATG-AGGCAACTG-TGT----TATGATG-ATTTTCATACATTGTGATTTAATTTCGCTTTTCTTCTCCTATTCGTT-AAATGGTCCCAA-CTGTTT-AAGAGTAT-ATGATTTCTTTGATGTCATAATAGAT-AACCTGT--CCAATTCTTGCAGCATGTAGC-GAACTTTAGTTCTAATTTTTACAA-A-CTG-AATTGGAAACTCCATCCCATACCACAGAAGCATAATCTCT-ACCATATTGGTCTTTAACAAAC-GT-ATATACA-TTTTGACAGTTTATCTCTACAC-GAGTAAACTTTGAGTTTTTATAATCAAT-CTAACTTTT--TACTAAAGGCAGGATTTACAAAATATTAATCAATCGTA-ACAGACAGG--ACCA-TTTAAA---AT--TCATCTGAAAAAT--C-AAACCAAGATGCTTAA---TG--CGATGAAACAAT-TTCTAAATTACAACCTGAAAAAAGCAGTTGAGGTATTTGGTTATGT-C-TGATTTACC-AAAAATAAAACCTTGTTTTGATTTGGGATTAAATTG--G-----------T--AAC---CA-ATCT-------TTCAGACCATTTTTTCTAAT-ATTGCTAA-AAGCATGATTAAAGT-A-GGCACATTCTA-GTTGTTTA-A--ATT-C----TTA-CCG-CATATATG-GAATT--GAA-T-GTCATCCAGCATATTACCGA----CAAAGAGATAATAGTTATGAAGTGAGCAACATCGTTGGACATGAGTGTTA--TCAAAAACAACAAATGGAC-CAAGGACGGAACCTATGTGGCACTCCAGCATTA-ATTT-T-CA--AA--------CTGTGTTG-----AT-ACAAATCTTTATACA-TAA--T-TTTGCTGTC-TAATTGAT--ATAGAA--AGTTT-TAAACCA--TTGAAAAAGATT----TCACGTC-ATCGCGATCGTTTTGTAATTTGAAGAAAGAAGACCCTCAT-TGCCAGAACGACTCTGTCAAATGCCTT-T-G-ACAGAATCGCCATA-----------------------A-AAAA---CATAC
gi|20 : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-TATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGAT--ATATAG-TTTT-GAACTG---CAG--AAAAAAG---TTACAG-T-T-AA------TA-T--C--A--TAATGCAA-G--TT--atattgactttt
gi|22 : aGATGCCAAAATAGACAAACCAGTTAC-AATTGTTGCAGCGTGTAATTGAATTTT--TTCTA-TTTTTTTAATATCTGAAATTGCACA-TCCAt
gi|23 : ATCTAA-ATAC-AAATG-T-ATTAA---T--------------ATGTAATA-AGTAT--ACTATA--T-CATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AG
gi|24 : taTTC--ATTTTT-GAACGACA-TCTGGAATGAATGA-T-T-----------ATTTTGTG--TT-TA--CA-TGTT--AGAAAT--ATATAGTTGT-CTT-CATT---
gi|25 : T-CAAACATAACATGTCTT-GC-ATTATAATA-A--GTTTTA-CG--AAT---AA-AGCAACT-GT--GA-TAAGC--A--
gi|26 : GACCCTCA--TGCCA----GACTCTGTCAAATG-CTT-T-G-ACAG-ATCGC---A-----------------------A-AAAA-C-CATAc
gi|27 : C-AATTATGCC--T--CAAC--TTTG--CG--TAA-ATAATATTT-AACAAGC-G----TTTTCC-AAA-A-aa
gi|28 : -TT--TGT----GTCTATAAGAGATAACTCA---TCTAA-AGC-AAACAA
gi|3 : TAATATAC-AAATA-G-AG-AA---T--------------ATATGATA-AGTGCGCACTGAA--T-TTTA---AAGTTG-ATAAATC-AAGTA-AAATCGTA--TTTTGACATTACATATAT--ATATAG-TTT--GAACTG---CAG--AAAAAAT-TTTTGCAG-T-TTAA------CA-T--CTCA--TGACGTAA-G--TTA-CA-T-GTCCCCAAAGTAAAG-TA-TT--TGT----GTCTATAAGAGA-AACTCATCTTTTAA-AGT-AAACAATATGA-CAAACCAAACTTGTCTT-GC-ATTAGAATA-C--TTTTTA-CA--AAT---AAGAGAAAAA-GT--GGTTAAGC--A---C----TTCT--TG-TTGTC-----CAC--ATAAACAA-TTAGGTGTG-TCAATAATGTTTTTTCT-A--TACAAGT----CA-TA--ATTCAAG-ATAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATGT-AATAGGC-GT---TTTCCC-AAA-A-TTGA-AATG--CTTTGG-----AGGCAGT-CTA-TT--TTGACAATATTAGATAT---G-CGTCT-T-CGAAATTGA-TTGATTGACG-AAGATTTTGTTACTA----CAT-TTGG--TAAATTCATGTTCAGATATAC-AAATAGCA-TCCGGAATGAAAGA-T-T-TCTTGGTTAAATTTCAAG--TC-TA--CA-T-TT--GGTAACTGATATAATTTT-CTTGCGTT---TCG-AGTG-CT-TA-TTGGA-----AAACTTACTTTTGCATTTC--T-----A-TTGTCAAATAT-GT-CCATGGTAAA-TATATGTAGGTA-CTG-AGTAT-CTATCATGCGTTca
gi|4 : TAATATAC-AAATA-G-AG-AA---T--------------ATATGATA-AGTGCGCACTGAA--T-TTTA---AAGTTG-ATAAATC-AAGTA-AAATCGTA--TTTTGACATTACATATAT--ATATAG-TTT--GAACTG---CAG--AAAAAAT-TTTTGCAG-T-TTAA------CA-T--CTCA--TGACGTAA-G--TTA-CA-T-GTCCCCAAAGTAAAG-TA-TT--TGT----GTCTATAAGAGA-AACTCATCTTTTAA-AGT-AAACAATATGA-CAAACCAAACTTGTCTT-GC-ATTAGAATA-C--TTTTTA-CA--AAT---AAGAGAAAAA-GT--GGTTAAGC--A---C----TTCT--TG-TTGTC-----CAC--ATAAACAA-TTAGGTGTG-TCAATAATGTTTTTTCT-A--TACAAGT----CA-TA--ATTCAAG-ATAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATGT-AATAGGC-GT---TTTCCC-AAA-A-TTGA-AATG--CTTTGG-----AGGCAGT-CTA-TT--TTGACAATATTAGATAT---G-CGTCT-T-CGAAATTGA-TTGATTGACG-AAGATTTTGTTACTA----CAT-TTGG--TAAATTCATGTTCAGATATAC-AAATAGCA-TCCGGAATGAAAGA-T-T-TCTTGGTTAAATTTCAAG--TC-TA--CA-T-TT--GGTAACTGATATAATTTT-CTTGCGTT---TCG-AGTG-CT-TA-TTGGA-----AAACTTACTTTTGCATTTC--T-----A-TTGTCAAATAT-GT-CCATGGTAAA-TATATGTAGGTA-CTG-AGTAT-CTATCATGCGTT
gi|5 : TAATATAC-AAATA-G-AG-AA---T--------------ATATGATA-AGTGCGCACTGAA--T-TTTA---AAGTTG-ATAAATC-AAGTA-AAATCGTA--TTTTGACATTACATATAT--ATATAG-TTT--GAACTG---CAG--AAAAAAT-TTTTGCAG-T-TTAA------CA-T--CTCA--TGACGTAA-G--TTA-CA-T-GTCCCCAAAGTAAAG-TA-TT--TGT----GTCTATAAGAGA-AACTCATCTTTTAA-AGT-AAACAATATGA-CAAACCAAACTTGTCTT-GC-ATTAGAATA-C--TTTTTA-CA--AAT---AAGAGAAAAA-GT--GGTTAAGC--A---C----TTCT--TG-TTGTC-----CAC--ATAAACAA-TTAGGTGTG-TCAATAATGTTTTTTCT-A--TACAAGT----CA-TA--ATTCAAG-ATAC-AATTATGCC--T--CAGC--TTTG--TG--TGA-ATAATATGT-AATAGGC-GT---TTTCCC-AAA-A-TTGA-AATG--CTTTGGAGGCAGTGCAGTGCTATTT--TTGACAATATTAGATAT---G-CGTCT-T-CGAAATTGA-TTGATTGACG-AAGATTTTGTTACTA----CAT-TTGG--T-AAATCA-TTCC--ATTTAC-AAATGGCA-TCCGGAATGAAAGA-T-T-TCTTGT--AAATTTCAAG--TC-TA--CATT-TT--GGTAAT--ATATAATTTT-CTT-CATT---TCG-ATTG-CTGTA-TTGAAAACTTACTTTT---------GTCA--T--ACTA-TTGTCAAATAT-GT-CCA-TGTAAA-TATATGTAGGTA-CTGTAGTATACTATCAT
gi|6 : ATTTAA-ATACCAAATGCT-ATTAG---T--------------ATGTAATGCAG-AT--ACTATA--TATATA---AA-TTG-ACAAATT-AATTA-AA-TC-TA--TCT-GACAT-----AGATA-ATATAG-ATTT-GAACTG---CAG----AAATT-TTTTACAGTT-T-AA------TA-T--C--ATTTAATGCAA-GTTTT--CA-TGGTCCCCACAACAAAGTTATTT--TGT----ATCTATAATAGATAACTC-TTTTCTAA-AGCAAAACAACTTGTCCAAACATAACATGTCTT-GCAATTAGAATA-T--TTTTTACCA--AGT---AA-AG-AAAA-GTTCGG-TCGGC--A--TCT---TTCT--TGTTTTTC-----CACCAATAAACAA--TAGGTGTGTTCGATAATGTTTTTTCTAA--AACAAGC----CATTA--ATTTAAT-ACAC-ATTTATGCC--TAACGTT--TTTGTTTGGTTGA-ATAATATTTAAACTGGC-G----TTTTCC-AAA-ATTTGAGAATG--CTTT-G-----GAGCA-TGCTATTG--TTGACAATATTAGATATTACG-CTCTT-T-CTAATTTGAGCTGATTGACG-AAGA-TTTGTTATCT----CAT-TTGGGTTAAAAGCA-TTCC--ATTTAC-AGATGACATTCTGGAATGAAAGA-----TCTTA---AAAATTCG-G--TC-TA--CA-T-TTTCAGTATT--ATATAATTTT-CTT-CATTTCGTCG-AGTGCCTGTAGTTGAA-----ACATTT---------TTCCTAT--A--A-TTG---ACTATAGTATCACCATAAAGTAT
gi|7 : taTTTCTAAGTTAAGCC-AAGTCTT--TA-TTC--GCATTATTTAC--AATGTT-ATTAG-CATACATA-----GTGACCAGCTTAAATTAAT--TCATTCGTAAAAG--TAAGACCAAGGTGCTTTG---TGAACAGTAAAAT-AT-G-CAGGCTGACATTGTTGAAACATTACTT----TTTTTTTTTTTGGTCATGGT------AAAAGTATTGATTTTGTTTTATTC-AAATTAATTTGAAAATTAATTTATTTCAAAT---TA-ATCACAAGAAGTTTGGACCA-CTCATCTAAG-ATTAT-TA-GATCATGATT-ATTT-T-A----AC---ATGTTGTTTA-ATCACTGCAACATTATACGACG-ATCTTTGAATA--GAATT-GTCAT-CTGCAAATAATCTA----CACATTGACAACA--TAC--TGTCTGATACAACGTA-AATATA-----GATTTTAAAAAT-GC-AGAGGTCTC-AGGACTGAGCCT-TGGGGAACACCAACAGTATG-CT-T-C-------------C--GGTTGAAGAAAT-AGAAATGTATATATA-TA-------TAC-GTC--A--CTAT--ATATAT-TTGTTC-TCTATTA--TTTAAATA-ATT-----TG---T-AAACT-TATG-GGCTTAGTTTGA--AAAAAAGGCCTTTA--TTTCA----CACTTTGTCGAAGG-CTTATAG-AAGG-GTCAC---A-----------------------A-AAAT-C-CATACGAAATAATCTTCCCTCAT
gi|8 : A---T--------------ATG-AATA-GGTCC--ACTA-A--T-TATA---AAGTTGGATACATC-AAGTATAA-TC-TAAATTT-GACAT-----ACATT-ATGTAAATTTT-GAACTGATGCAG--AAAAA-C-TTTTGCAA-TGT-AA------CA-CAAC--A--TAACATAG-GG-TT--TA-T--TTCCCAAATAGAAG-TA-CTAGTGT----ATCTATAG--AATAATTCGTGTT--AATAGC-AA-CAATTTGT-CAAACAAAACGTGTCTTGGC-ATTA-AATA-CTTTTTTTA-C---AAT---AA-AG---AA-GT--GA-TTAGCATA--TC----TTCT--GG-TTTTC-----CAC--ATAAACAA-TTAGGTGTG--CAATAATGGTTTTTCT-AATAACAAATAGAATA-TA--ATTTAGGAACAC-AAGT---TC--T--CA-CTTTTTG--TGT-TGG-ATAATATTT-AA-AGAT-ATGACTTATCC-AAA-A-TTGA-AATG--CTTT-G-----GAGCAGTGCT-TTT--TTGACAA-ATTAGATAT---G-CTTCTCT-CGAATGTGA-CTGATTGACA-AAGA--TTGTTAACT----TGTGTTTG--TGAAACTCGTTCC--ATTTACTAAAT-GTA-TCCAGAAGTAAAGA-T-TCTCTTG---TAATTTCGAG--TCTTA--CA-T-ta
gi|9 : atatacaatagaaaatagtataataaagactAG-----------T--AACGCCCATGTA--------TT-AGACCAGTTTTTTTAATCATATC-AA-GGTCATTTGT-AAGTTA-A----AGAGAATG--GTTTACA--ATA-C--CATTATCAA-TG-ATAGC-AAATAAGGAGAT-GTAAT-CAGCAAATAATCGAATTTTATTAGGA----A--TAT--CATTGGTGACGTCATT-GATATA-----AA--GTAAGGACAAG-AATAGAC-CTAGTACTGACCCC-TGAGGTACCCCATCATTA-A-TTATACAGTAATATTTTCTT--TGTAG-----AT-GTAAAACCTTCTACAGTTA-CTCTTTGCTGTT-TC--TGAG--TTA-AG-TAGTTT-TAATCCAGCTT--AATATATTAC--CTA---CAAAACCCAACC-TCTGAAGTTTAT--GAACAAAA--CTTAAGTGCCA----AACTCGGTTAAACG-CTT-T-G-GGAA-AT------A-----------------------ATAAAA-CGAATAT--C----TTTCCCTTTATCAAGACTTTGAATTATTTT-------AT---TA-CACATTT-CTACCAGCTGGT-ggt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTAACAGTAATTTCTATTTCAGCAACGCTATTTGATGAATATTGGAAAGAATTATCAACTGCAAAAAGTCTGCACATAGACAGCATTTTGTCTGAAAC