lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 33333 1 11 444444444444444444 2222222 11111 11 22 2222222 1 77777777777777 1 11111 1 11 1111111 1 1 111 22222 11111111 1111111 5555555555555555555555555555555555555555555555555555 11 11111 1111 1111111 11111111 11111 22 333333333 1111111111 11111111111 1 666666666666666666666666666666666666666666666
lowQualScore : 3 0 33 3 00000 8 8 44 0 3 8 55 44 6 444444444444444444 99 1111111 99999 66666 5 9 66 99 1 5 11 6666666 0 5 77 1 3 3 0 22222222222222 1 44 5 8 0 11111 1 7 44 1 99 2 66 5555555 0 3 4 1 4 9999 5 2 6 5 1 33 222 5 9 2 55555 5 0 1 0 88888888 5 5 6666666 0 4444444444444444444444444444444444444444444444444444 4 66 22 66 99999 8 5555 3333333 4 4 4 4 4 88888888 4 00000 99999 88 3 55 99 4 9 0 55 4 4 44 77 4 4 4 111111111 6 77 6 555 3333333333 44 3 33333333333 5 2 66 2 2 6666 888888 33 222222222222222222222222222222222222222222222 555 2 3 2 2 2 77777
lowQualScore : . . .. . ..... . . .. . . . .. .. . .................. .. ....... ..... ..... . . .. .. . . .. ....... . . .. . . . . .............. . .. . . . ..... . . .. . .. . .. ....... . . . . . .... . . . . . .. ... . . . ..... . . . . ........ . . ....... . .................................................... . .. .. .. ..... . .... ....... . . . . . ........ . ..... ..... .. . .. .. . . . .. . . .. .. . . . ......... . .. . ... .......... .. . ........... . . .. . . .... ...... .. ............................................. ... . . . . . .....
lowQualScore : 2 2 22 2 55555 0 0 00 0 2 8 22 88 6 222222222222222222 00 7777777 33333 77777 2 8 00 88 0 0 66 0000000 8 0 88 4 0 2 0 55555555555555 2 44 8 0 8 22222 0 0 33 0 22 5 11 1111111 3 7 4 8 7 4444 0 2 7 7 6 11 333 0 5 5 00000 0 1 4 1 11111111 0 0 2222222 4 0000000000000000000000000000000000000000000000000000 4 11 22 11 66666 9 9999 0000000 0 0 0 0 0 55555555 0 22222 11111 66 6 00 55 0 6 7 55 0 4 44 66 0 0 0 333333333 2 99 7 888 5555555555 22 1 66666666666 1 9 88 9 9 1111 111111 99 000000000000000000000000000000000000000000000 000 9 4 9 9 9 11111
consensus : TTATTGTTAGAAGAAGGACAAAATTAAA-AAN-AT-T-ATGTACAAAATTTATCA-TAATATGGTACTAGATTATCTTCAAA-GTATTCTACCAAGTATACGGT-----CA-----------CA-AGAAT-------C--A--AAT-----TATGCCACCAGACAATC-GCAAAATTA-CAGCATTCCCAAATGTNGATTAAACAT-------TTATAAGTCATCCTTTGTCCCAGTAGCGATAGACGAATGGAATTCANTACCTATGGAANTAAGA-CAATCAACTTCTCTGAAN----CTTTCAAAAACAATTTACATTTACCAAAATC-ACAACCTCCTCCTTATTTTTCGCATGGAGAGCGCTA--CTGGAATGTGATACAT--ACA------AGACTAAGGCATAATTGTGTACTAAATAAA-GACTTATTCAGAC----G-TAACATTATTGATAGTCCT-CTGTGTTCTTGTGGTAAAACAGAGGACGCTTATCATTACTTTTTCTCCTGC-ACTAAGTACTCTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------T--------------G-AC--AATG--AA--A---T-TT-TTTTCCCCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTTTA----AGTTT-----ATTTT--CG-T--A--TATA-GAATAGC--A-TATCGAT-AA-TCTGT-GAAATTCAA-GA-AGTA-TATTTACA----G----AATTT-TT-C---ATAA----------GTA--TG-TTA-----------AAATGACCTT-T--GAT-ATCATT-G----T-G----GT--T--------A----------G-------------A-----------TT---TT-GTGT-CA-T-C-----TATTGTAACAT
Reference ( gi|3 ) : TTATTGTTAGAAGAAGGACAAAATTAAA-ACA-AT-T-ATGTACAAAATTTATCA-TAATATGGTACCAGATTATCTTCAAA-ATATTCTTCCAAGTATACGGT-----CA-----------CA-AGAAT-------C--A--AAT-----TATGCCACAAGACAATC-CCAAAATTA-CAGCATTTCCAAATGTATATTAAACAT-------TTATAAGTCATCCTTTGTCCCAGTAGCGATAGGCCAATGGAATTCAGTACCCATAGAACTAAGA-CAATCAACTTCTCTGAAAA---CTTTCAAAAACAATTTACATTTACCAAAATC-ACAACCTCCTTCTTAATTTTCGCATACAGAGCGCTA--CTGGAATGTGATACAT--ACA------AGATTAAGGCATAATTGTGTACTAAATAAA-GACTTATTCAGAT----G-TAACATTATTGAAAGTCCT-CTTTGTTCTTGTGGTAAAACAGAGGACGCTTATCATTACTTTTTCTCCTGC-ACTAAGTACTCTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------T--------------G-AC--AATG--AA--A---T-TT-TTTTCCCCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTTTA----AGTTT-----ATTTT--TG-T--A--TATA-GAATAGC--A-TATCGAT-AA--CTGT-AAAATTCAA-GA-AGTA-TATTTACA----G----AAATG-TT-C---ATAA----------GTA--TG-TTA-----------AAATTACCTT-T--GAT-ATCATT-G----T-A----GT--T--------A----------G-------------A-----------TT---TT-GTAT-CA-T-C-----TATTGTAACAT
gi|1 : TTATTGT-ATAAGAAG--CAAAATTAAA-AAC-ATAT-ATGTACAAAATTT--CAATAATATG-TACTAGATTATCTTCAAA--TATTCTTCCAAGTATATGGT-----CA-----------CA-AGAAT-------C--A--AAT-----TATGC-ACA-GACAATC-GCAAAATTA-CAGCATTCCCAAATGTAGATTAAACAT-------TTATAAGTCATCCTTTGTCCCAGCA-CGA-AGGCCAATGGAACTCAGTACCCATAGAACTAAGA-CAATCAACTTCTCTGAAA----CTTTCAAAAACAATTTACATTTACCTAAATC-ACAACCTCCTTCTTCTTTTTCGCATGGAGAGCGCTA--CTG-AATGTGATACAC--ACA------AGATTAAG-CATAATTGTGTA-TAAATAAAAGACT-ATT-AGATCTATG-TAACATTATTGATAGTCCT-ATGTGTTCTTGTGGTAAAACAGAGGAC-CTTATCATTACTTTTTCTCCTGC-ACTAAGTACT--GCTCCCAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GA-ATGACTCTATTAATATTA---C------------------T--------------G-AC--AATGAAAA--A---T-TG-TTTT--CCTA-------T-GTA-------------ATAAAA--------AGAT-CTGGTCGTTTTTA----AGTTT-----A-TTT--TG-T--A--TATT-GAA-AGC--A-TATCGAT-AA--CTGT-AAAATTCAA-GA-AGTA-TATTTACA----G----AAATG-TT-C---ATAA----------TTA--TG-TCATTAATTATGTTAAATGACCTT-T--GAT-ATCATTGG----T-A----G---T--------A----------G-------------A------------T---TT-GTAT-CA-T-C-----TATTGT-ACAT
gi|11 : ctggtcggcatacattggactgtcaaaattaccaaatgcttaataaaaaaaactgggattgcttaaaaaattacagtttaagggtcaattgcaaaactttatcacttttatactacttttataggccgtcgctagaatatgcatctgaggtagggggtgggtgttcaatcaagattcagaaaaactagaaaaattacagttagcagccgcgaggattatccacaggtcttacttccttggcatcgcgtgactctctcattttgaacgggtggaacgcgcTTACTGTTAAAAGAAGGGTAAGATTAAACACA-AT-T-ATGTACAAAATTTATCA-TAATATGGTACTTTGGTATCTCCAAA-GTATTCTACCAAGTATATGGTATCTCCAAAGTATTCTACCA-AGTATACGGTCGC--ATGAATCAAATTACGTCACCAGACAATCGCTAAAATAA-CAGCATTCCCAAACGg
gi|16 : aactagaaaaattgcagttggcagctacaatgttagtcacaggtcttactttcttgacatcacgagactctctctatttcgaaactgggtgggaactacTTCTTGTTAGAGGAATGACAAA-----------AT-T-ATGTACAAAATTT
gi|2 : atctgcctctgaagtagtggttttgggtgttcaaatcaagattctgaaaaaaattacagcttgcagcagcaagattagtttctggactaacttcattggcgtcacgggaacttcgttattttgaaactggataggaaccacTATTGTTAGAAGAAGGACAAAATTAAA-AAGGAT-T-GTGTACAAAATTTATCA-TAATATGGTACCAGATTATCTTCAAA-ATATTCTATTAAGTATATGGT-----CT-----------CA-TGATT-------C--A--AAT-----TATGCCACCAGACAATC-GCAAAATTA-CAACATTCCCAAATGTAGATTAAACAT-------TTATAAGTCATCCTTTGTCCCATTAGCGATAGGTCAATGGAATTCAATACCCATGGAATGACGA-CAATCAACTTCTCT--------------AAAATATTTTACATTTACCAAAATC-ACAACCTCCTTCTTATTTTTTACACGGAGAGCGCTT--CTGGAATGTGATACAT--ACA------AGATTAAGGCATACTTGTGTACTAAATAAA-GACTTATTCAGAT----G-GAACATTATTGATAGTCCT-CTGTGTTCTTGTGGTAAAACAGAGGACGCTTATCATTATTTTTTCTCCTGC-ACTAAGTACTCTGCTCACAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATGACTATTGATATT--A---C------------------T--------------G-AC--AATG---A--A---T-TT-TTTCCCCCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-TTGGTCGTTTTTG----AGTTA-----ATTTT--CG-T--A--TATA-GAATAAC--A-TATCGAT-AACTCTGT-GAAATTCAA-AA-AGTA-TATTTACAGTCCG----AATTT-TT-C---ATAA----------GTA--TG-TTA-----------AAATGACCTT-T--GAT-ATCATT-GGGATT-A----GT--TTTATATTCA----------GATT----------A-----------TT---TT-GTGT-CA-T-A-----TATTGTAAC
gi|4 : -AT-TGATGTATTAAATTTACCA-CAA----------GACAATCTCAAAA-GCATATTACCAAATATACGCT-----CA-----------GA-CGAAT-------C--A--AAT-----TATGTGACTAGGCAGTC-TCAG-------------------TGTCGATTACATAC-------GTACACATCATCCTTTGTCCCAGTAGCGATAGACAAATGGAATTCTTTACCTTTGGAAATAAGA-CAATCTACCACTTT--AGGTTCCTTT--AAAACTGTTTGCAAATGTCAAAAACTAC-GCCTCCCCCATATTTTTCTCGTGGAGAACGCTA--CTGGAACATAATATAC--ACT------AGACTGAGA-ATAATTG------------------------GAC----G-CAATAGCATTGATAGGCCT-TTGTGCACTGGTCGTAAAACAGAAG-------------TTTTTTCTCTTGT-ATAGAATATTCCGGTCCCAGAAATGATTTATTTAA-----TGCCATCTTTAGAATA-GAAAATTTACACATAGTTGATACTCGTGTACAACTCCTTTAG-TATTAGA-------GAAA--------------------------------------------------------AC--AAAA--AATTA---T-TTATTTTTTTTTATAAATGCT-GTA-CA-ATTAGTTT--TAAAG--------AGAT-ATTGCTGTTTTT-----AGTTT-----AATTC--CG-T--
gi|20 : AGATTATCTTCAAATATATCTCTCCAAGTATACGGT-----CA-----------CATAGAAT-------CCAA--AAT-----TATGCCACCAGACAATC-GCAAAATTACCAGCATCTttg
gi|17 : taaaaatattaagcatatcatacattcattattcttccaGAAT-------C--A--AAT-----T--GTTACGAGACGGT----AAAGTT--------TCCCAAGTTTTAATTAAATAGGAACAAATTACTAGT-ATATATTGTCCCTGTAGTGATAGATGAGTGGCATTCTATACCTTTGGAACgg
gi|12 : AATGTTGATTAAACAT-------TTATAAATCACCCTTT-TCCAATTGGCGATAGATAAATGAAATTCACTACCTATGGAAATAAAAACAATCAACTTTTCTAATTT---CCTTCAAAAACAATTCAATTTTCCCAAAA-C-ACAACC----CCTTATTTTTCGCATGGAAAACGCTA--CTGGAATG-----------------------TAGGACACAATTATGTATTAGATA--------------AC----G-TAACATTATTGATAATCCT-CTGTGTTCTTGCGGT-AAACAGAGGAC----ATCACTACTTTaatctgtatagtaatttaaaaagtgtttgcgagtgtcaaa
gi|22 : ACACT--CCAAAA-C-ACAACCT------TATTTTTCGCATGGAGGGCACTATACCGTAATGTGATACAT--ACATGTACTAGACTAAGGCATAATTGTGTATTAGATAAA-GACTTATTCAGAT----
gi|8 : GCATACA-------A--TTAGA--GTGAAACAT--ACA------AGATTAAGGCATAATTGTGTACTAAATAAA-GACTTGTTCAGAT----G-TAATATTATTGATAGTCCT-CTGTGTTCTTGTGGTAAAACAGAGGACGCTTATCGTTACTTTTTCTCCTGC-ACTAAGTACTCTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTGTAGGATG-GATAATTTATACATAGTAGACACTCGTGTG--------TTAC-TA-TGGGGAGAATAGAGATG--------------A---CTCTATTAATTAGTATTATT--------------G-AC--AATGAAAA--A---T-TG-TTTT--CCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGT
gi|23 : catagtATATTATTCGT--ACT------AAACCAAGGTGTAACTGTTTACTAAACTAA-GATTTACATAAGC----G-TAACATAATCGACAGTCCT-TTT--TTCTTGTGGACAAAGTGAAGATGTGTATC
gi|5 : ctTATAATGCAC--ACT------AGACTGAGGCATGGTTGTATTTTAAACAAA-GATTTATTTAGAT----GGTAATAT-ATTGATAGTCCTGCTGTGCT---GTGG-AAAATTGAAGACGCATACCACTTCTTTT-CTCTTGT-GTGAAATATT----TCCCAGAAATGATTTGTTTAA-----TGC-ATATTTAAAATA-GAAAATTTACAC-TAGTTGATAC-CGTGTT--------TTACTTT-TGGG-------GAGAAA--------------AATCC------------------TTTA-----------GTATTAAACG--AA--A---T-TTATTTT---CTA-------TAGTA-CA-ATT-ATTT-CTAAAG--------AGAT-CTGGTCGTTTTTAGTTCAATTCCTTTAATTTTTATG-T--AT-TATA-GATTATCCAA-TAT
gi|28 : GATACATGTACA------AGATTAAGGCATAATTGTGTACTAAATAAA-GACTTGTTCAGAT----G-TAACATTATTGAatgcattgttatttgtactcattatgcaatatatatt
gi|6 : acagtggacagacagagagaACTTTTTCTCC-GC-AC--GGTACTCTGCTCCCAGAAATGATTTATTTAAATAAATGCTATTTTTAGGATGTGATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------TCTATTAATATTACTG-AC--AATG--AA--A---AATT-GTTTCCTATA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTT-A----AGTTT-----ATTTT--TG-T--A--TATA-GAATAGC--A-TATCGAT-AA--CTGT-AAAATTCAAAGA-AGTA-TATTTACA----G----AAATG-TT-C---ATAA----------GTA--TG-TCA-----------AAATGACCTT-T--GAT-ATCATT-G----T-A----GT--T--------A----------G-------------A-----------TT---TT-GTGT-CA-T-C-----TATTGTAACAT
gi|7 : ACTTTTTCTCCTGC-AC--GGTACTCTGCTCCCAGAAATGATTTATTTAAATAAATGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------TCTATTAATATTACTG-AC--AATG--AA--AAA-TGTT-TTTTCCTATA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTTTA----AGTTT-----ATTTT--TG-T--A--TATA-GAATAGC--A-TATCGAT-AA--CTGT-AAAATTCAA-GA-AGTA-TATTTACA----G----AAATG--T-C---ATAA----------GTA--TG-TCA-----------AAATGA-CTT-T--GAT-ATCATT-G----T-A----GT--T--------A----------G-------------A-----------TT---TT-GTGT-CA-TAC-----TATTGTA
gi|9 : CTTGTTTTTCTGCCACTAGGAATTCTACTCC-AGAAATGATTTATTTAA-----TGCTA-TTTTAGAATG-GATAATTT-----------------GTCTG--------TTAC-TA-TAGC-------AAGATGACTCATTAGTATT-A---C------------------T--------------G-AC--AATG--AA--A---A-TT-TATCTTCCTG-------T-GTA-CA-ATT-GTTT-ATAAAA--------CGAT-AGGGTAGTTTTTC----GGTTT-----ATTTT--TG-T--ATCTGTA-CCATTGC--A-TATCAAC-AATTCTGT-GAATTTCAA-GA-AGTA-TATTTTTAATCTG----AATCT-TT-CATTATAATCTATGTAATATA--TT-TTA-----------AAATGACCTT-T--GAT-ATCATT---------------------------------------------------A-----------TT---TT-GTGA-CA-T-CAATATTATTGTAACATca
gi|13 : --------------A---C------------------T--------------G-AC--AATG--AA--AACAT-TG-TTTTCC--TA-------T-GTAGCACATT-GTTT-ATAAAAT-------AGATTCTGGTCGTTCTTA----AGTTT-----ATTTTC-TG-CTCA--CACATGAA-AGC--AGTATCGAT-AA--CTGT-AGAAATAAA-GACAGT--TATTTACA----G----AAATG-TTCC---ATAA----------TTGATTGATTA-----------AAATGACTTTGTA-GAT-AGTATA-G----TAA----GCTAT--------A----------G-------------AC----------TT---TT-GTAT-CA-T-C-----TATTGTA
gi|15 : actcgtattaatatA-------T-G-A-CA-ATG-ATTTCATAAAATGTATTTTAGAA-CTAGTAAGCTTTA----AGTTT-----ATTTT--CGCT--A--TATA-AAA---C--A-TATCGATTAAGTCTGTTGAAATTCAA-AA-AGTA-T--TTACA----ACCC-AATTGATT-C---ACA-----------GTA--TG-TTA-----------AACTGACCTT-TTTGAT-ATCATG-A----T-G----GT--T--------A----------GTTTTTAACAGATTA-----------TT---TT-GTGT-CAGT-C-----TATca
gi|18 : GTTT-----ATTTT--CG-T--A--TATA----------A-CATCGAT-AATTCTGT-GAAATTCAA-AA-AGTAATATTTACA----GTCC-AAATT-TTTC---ATTA----------GCA--TG-TTA-----------TAATGACCTT-T--GCT-ATCATT-G----T-G----GT--T--------A----------GTTTTTAACAGATTA-----------TT---TT-GTGT-TA-T-C-----TATTGTAACATgaaca
gi|21 : GTTT-----TTTTT--CG-T--A--TATA-GAACAAC--A-TATCGAT-AA--CTCT---------------GTG-AATTTACA----GTCCGAATTT-TT-C---ACAA----------GTA--TG-TTA-----------AAATGACCTT-T--GAT-ATCATT-G----T-G----GT--T--------A----------T-------------A-----------GT---TT-----------------TATTGTAAC
gi|26 : aaagtTTCAA-AA-AGTA-TATTTACA----G----AATTT-TT-C---ATAC----------GTT--TG-TTA-----------GAATAACCTT-T--GAA-ATCAAT-G----T-A----GT--T--------A----------G-------------A-----------TT---CT-GTGT-CA-T-C-----TATTGTAACAT
gi|24 : TTACA----GTCCGAATTT-TT-C---ACAA----------ATA--TG-TTA-----------AAATGACCTT-T--GAT-ATAATT-G----C-ACATTGT--T--------A----------G-------------T-----------TT---TTAGCATATA-T-C-----TATTGTAACg
gi|27 : caataaatctgtgaaa----G----AATTT-TT-T---ATTA----------GTA--TT-TTA-----------AAATGAGCTT-T--GGT-ATCAAT-G----T-G----GT--T--------AATTTTTAACGG-------------A-----------TTATCTT-GCGT-CA-T-C-----TATTGTAACAT
gi|30 : tccA----------ATA--TG-TTA-----------AAATGATCTT-T--CATCGTCATT-G----T-G----GT--T--------A----------G-------------ACTTAA------TT---TT-GTGC-CA-T-C-----TATTGTAACA
gi|32 : ttcttatgtac-----------AAATGATCTA-T--GAT-ATCATT-G----T-G----GT--T--------A----------G-------------AATAAATAAAACTT---TT-GTGT-CA-T-T-----AATTGTAAC
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): GTTATTTAAATCAGTTACAGTTCAAGTCAGTTCTAAAACTTTAACTTTTATTATACTACCATGTACTTCAATAGACACTCGCGGGAATATGCTCAGAATGCAAGGTGGATGTCACAATCAAGATCCGAAAAACTTGAAAAATGACAACTTGCAGCGCAAGATTAGTCACTGGTGACTTATTGACGTCACCGGAATCTCTGTATTTCGAAACTGGGTGGACCACTTATTGAAACATTAGGGATGAATGGACAAAATTAGAGAATAACTATACACTGCAATAAAATATATCATTATATGGA
Unaligned ( gi|14 ): CAAGAAGAATTTAAGGTCAATTGCAAAACTTTATCACTTTTATACGCTACTTTTATAAGGCCGTTGCTAGAATATGCATCTGAGGTATGGGGTGGGTGTTCAAATCAAGATTCAGAAAAACTAGAAAAATTACAGTTAGCAGCCGCGAGGATAGTCACAGGTATTACCTACTTGGCATCGTGAGACTCTTTCTATTTCGAAACTGGGTGGGAACCGCT
Unaligned ( gi|19 ): GTTAAAAATTACAGTTTAAGGTCCTGAAACTTTATCACTTTTATACAGTACTTTTAAAAGTCTTCCTTTAATGTTGGAATATGCATCTGAAGTATGGGATGGGTGTTCAATCATTTCAAATTTAAAAAAAAAAAAAA
Unaligned ( gi|25 ): GAGATCTGGTCGTTTTTAGTTCAATTCCTTAATTTTTTATGTATTATAATTATCCAATATATGCATTTTATTTGTACTCATTATGCAATATATATTT
Unaligned ( gi|29 ): GATACTTTGTTATTTCGCAATTTTATACACTACTTTCATAAGACCTCATTTTGGAATATGCATCCGAAGTATGGATTGGG
Unaligned ( gi|31 ): ATATCAATATTATTATTCATACTAAACTAAGGTATTTAACTGTTTACTCAATGAAACTATGATTTACACAAG
Unaligned ( gi|33 ): AGCTGGTCAATATACATCGATTCGTTATATTAGCCAACGCGTATATAAAAAAAACCCTGG
Unaligned ( gi|34 ): TTATACTGAACTAAGGTATAACTGTTTACTCAACTGTAATTTACA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 77777777777777777777777777777777777777777777 11 11 2222222 4444444 1 1111111 22222 11111111 1111111 3333333333333333333333333333333333333333333333333333 11 11111 111 1111111 11111111 222 222222222 1111111111 11111111111 66666666666666666666666666666666666666
lowQualScore : 0 0 9999 5 5 6 6 77777777777777777777777777777777777777777777 99 33 6 7 00 77 3 6 0 0 5 77 1 1111111 7 1 1 8 4444444 55 1 1 6 4444 99 55 2222222 0 2 4 0 3 8888 0 4 1 5 00 777 4 7 0 22222 4 0 66666666 4 4 4444444 5555555555555555555555555555555555555555555555555555 4 55 55 55 22222 8 111 1111111 3 3 3 3 3 55555555 3 7 3 77 55 4 9 4 55 777 3 3 3 3 44 555555555 0 3 555 2222222222 33 2 22222222222 2 66 2 2 5555 33 2 55555555555555555555555555555555555555 444 2 2 2 2 66666
lowQualScore : . . .... . . . . ............................................ .. .. . . .. .. . . . . . .. . ....... . . . . ....... .. . . . .... .. .. ....... . . . . . .... . . . . .. ... . . . ..... . . ........ . . ....... .................................................... . .. .. .. ..... . ... ....... . . . . . ........ . . . .. .. . . . .. ... . . . . .. ......... . . ... .......... .. . ........... . .. . . .... .. . ...................................... ... . . . . .....
lowQualScore : 8 8 2222 7 7 7 7 00000000000000000000000000000000000000000000 22 00 7 8 33 99 0 6 1 7 7 11 0 7777777 8 0 0 0 6666666 66 5 7 7 5555 22 55 7777777 5 3 0 7 2 5555 7 4 0 0 55 111 4 4 9 22222 4 1 11111111 4 4 4444444 8888888888888888888888888888888888888888888888888888 0 55 00 55 77777 0 222 8888888 6 6 6 6 6 44444444 3 9 1 99 00 0 6 0 00 888 6 3 3 3 55 888888888 8 1 444 5555555555 99 9 77777777777 7 33 7 7 7777 77 7 77777777777777777777777777777777777777 777 7 7 7 7 77777
consensus : TTATTGTTAGAAGAAGGACAAAATTAAAAAN-A-T-T-ATGTACAAAATTTATCA-TA-AT--A--------TGGTA-------------CT----A----G---AT--TATCTTCAAA-ATAT-TCTACCAAGTATACGGTCACA-NGAATC--AAATTATGCCACCAGACAATCGC-AAAATTA-CAGCATTCCCAAATGTNGATTAAACAT-------TTATAAGTCATCCTTTGTCCCAGTAGCGATAGGCNAATGGAATTCANTACCCATGGAANT-AAGACAATCAACTTCTCTGAATTN-CTTTCAAAAACAATTTACATTTACCAAAATC-ACAACCTCCTTCTTATTTTTCGCATGGAGAGCGCTA--CTGGAATGTGATACAT--ACA------AGACTAAGGCATAATTGTGTACTAAAT-AAAGACTTATTCAG----ACG-TAACATTATTGATAGTCCT-CTGTGTTCTTGTGGTAAAACAGAGGACGCTTATCATTACTTTTTCTCCTGC-ACTAAGTACTCTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------T--------------G-AC--AATG--AA--A---T-TT-TTTTCCCCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTTC-G--TA--TATA-GAATAGCA-TATCGAT--AA-T-CTGT-GAAATT-C-AAGA-AGTA-TATTTACA----G----AATTT-TTC---ATAA----------GTA--TG-TTA-----------AAATGACCTT-T--GAT-ATCATT-G----T--GGT-TA----------G---------------A-----------TT---TT-GTGT-CA-T-C-----TATTGTAACAT
Reference ( family-3299 ) : TTATTGTTAGAAGAAGGACAAAATTAAAAAN-A-T-T-ATGTACAAAATTTATCA-TA-AT--A--------TGGTA-------------CT----A----G---AT--TATCTTCAAA-GTAT-TCTACCAAGTATACGGTCACA-AGAATC--AAATTATGCCACCAGACAATCGC-AAAATTA-CAGCATTCCCAAATGTNGATTAAACAT-------TTATAAGTCATCCTTTGTCCCAGTAGCGATAGACGAATGGAATTCANTACCTATGGAANT-AAGACAATCAACTTCTCTGAA--N-CTTTCAAAAACAATTTACATTTACCAAAATC-ACAACCTCCTCCTTATTTTTCGCATGGAGAGCGCTA--CTGGAATGTGATACAT--ACA------AGACTAAGGCATAATTGTGTACTAAAT-AAAGACTTATTCAG----ACG-TAACATTATTGATAGTCCT-CTGTGTTCTTGTGGTAAAACAGAGGACGCTTATCATTACTTTTTCTCCTGC-ACTAAGTACTCTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------T--------------G-AC--AATG--AA--A---T-TT-TTTTCCCCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTTC-G--TA--TATA-GAATAGCA-TATCGAT--AA-T-CTGT-GAAATT-C-AAGA-AGTA-TATTTACA----G----AATTT-TTC---ATAA----------GTA--TG-TTA-----------AAATGACCTT-T--GAT-ATCATT-G----T--GGT-TA----------G---------------A-----------TT---TT-GTGT-CA-T-C-----TATTGTAACAT
gi|1 : TTATTGT-ATAAGAAG--CAAAATTAAAAAC-A-TAT-ATGTACAAAATTT--CAATA-AT--A--------TG-TA-------------CT----A----G---AT--TATCTTCAAA--TAT-TCTTCCAAGTATATGGTCACA-AGAATC--AAATTATGC-AC-AGACAATCGC-AAAATTA-CAGCATTCCCAAATGTAGATTAAACAT-------TTATAAGTCATCCTTTGTCCCAGCA-CGA-AGGCCAATGGAACTCAGTACCCATAGAACT-AAGACAATCAACTTCTCTGAA--A-CTTTCAAAAACAATTTACATTTACCTAAATC-ACAACCTCCTTCTTCTTTTTCGCATGGAGAGCGCTA--CT-GAATGTGATACAC--ACA------AGATTAA-GCATAATTGTGTA-TAAATAAAAGAC-TATT-AGATCTATG-TAACATTATTGATAGTCCT-ATGTGTTCTTGTGGTAAAACAGAGGAC-CTTATCATTACTTTTTCTCCTGC-ACTAAGTA--CTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GA-ATGACTCTATTAATATTA---C------------------T--------------G-AC--AATGAAAA--A---T-TG-TTTT--CCTA-------T-GTA-------------ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTT--G--TA--TATT-GAA-AGCA-TATCGAT--AA---CTGT-AAAATT-C-AAGA-AGTA-TATTTACA----G----AAATG-TTC---ATAA----------TTA--TG-TCATTAATTATGTTAAATGACCTT-T--GAT-ATCATTGG----T--AG--TA----------G---------------A------------T---TT-GTAT-CA-T-C-----TATTGT-ACAT
gi|11 : ctggtcggcatacattggactgtcaaaattaccaaatgcttaataaaaaaaactgggattgcttaaaaaattacagtttaagggtcaattgcaaaactttatcacttttatactacttttataggccgtcgctagaatatgcatctgaggtagggggtgggtgttcaatcaagattcagaaaaactagaaaaattacagttagcagccgcgaggattatccacaggtcttacttccttggcatcgcgtgactctctcattttgaacgggtggaacgcgcTTACTGTTAAAAGAAGGGTAAGATTAAACAC-AAT-T-ATGTACAAAATTTATCA-TA-AT--ATGGTACTTTGGTATCTCCAAAGTATTCT----ACCAAGTATATGGTATCTCCAAA-GTAT-TCTACCAAGTATACGGTCGCA-TGAATC--AAATTACGTCACCAGACAATCGCTAAAATAA-CAGCATTCCCAAACGg
gi|12 : aactagaaaaattgcagttggcagctacaatgttagtcacaggtcttactttcttgacatcacgagactctctctatttcgaaactgggtgggaactacAATGTTGATTAAACAT-------TTATAAATCACCCTTT-TCCAATTGGCGATAGATAAATGAAATTCACTACCTATGGAAATAAAAACAATCAACTTTTCT-AATTT-CCTTCAAAAACAATTCAATTTTCCCAAAA-C-ACAACC----CCTTATTTTTCGCATGGAAAACGCTA--CTGGAATG-----------------------TAGGACACAATTATGTATTAGAT-A-----------------ACG-TAACATTATTGATAATCCT-CTGTGTTCTTGCGGT-AAACAGAGGAC----ATCACTACTTT
gi|13 : --------------A---C------------------T--------------G-AC--AATG--AA--AACAT-TG-TTTTCC--TA-------T-GTAGCACATT-GTTT-ATAAAAT-------AGATTCTGGTCGTTCTTAAGTTTATTTTCTGCTCA--CACATGAA-AGCAGTATCGAT--AA---CTGT-AGAAAT-A-AAGACAGT--TATTTACA----GA---AATGT-TCC---ATAA----------TTGATTGATTA-----------AAATGACTTTGTA-GAT-AGTATA-G----TAAGCTATA----------G---------------AC----------TT---TT-GTAT-CA-T-C-----TATTGTA
gi|15 : actcgtattaatatA-------T-G-A-CA-ATG-ATTTCATAAAATGTATTTTAGAA-CTAGTAAGCTTTAAGTTTATTTTC-GC-TA--TATA-AAA---CA-TATCGATTAAG-T-CTGTTGAAATT-C-AAAA-AGTA-T--TTACA----ACCC-AATTGATTC---ACA-----------GTA--TG-TTA-----------AACTGACCTT-TTTGAT-ATCATG-A----T--GGT-TA----------GTTTTTAACAGATT--A-----------TT---TT-GTGT-CAGT-C-----TATca
gi|16 : TTCTTGTTAGAGGAATGACAAAA-----------T-T-ATGTACAAAATTTgaaca
gi|17 : atctgcctctgaagtagtggttttgggtgttcaaatcaagattctgaaaaaaattacagcttgcagcagcaagattagtttctggactaacttcattggcgtcacgggaacttcgttattttgaaactggataggaaccacGAATC--AAATT--GTTACGAGACG---GT-AAAGTT--------TCCCAAGTTTTAATTAAATAGGAACAAATTACTAGT-ATATATTGTCCCTGTAGTGATAGATGAGTGGCATTCTATACCTTTGGAA
gi|18 : GTTTATTTTC-G--TA--TATA--------A-CATCGAT--AA-TTCTGT-GAAATT-C-AAAA-AGTAATATTTACA----GTCCAAATTT-TTC---ATTA----------GCA--TG-TTA-----------TAATGACCTT-T--GCT-ATCATT-G----T--GGT-TA----------GTTTTTAACAGATT--A-----------TT---TT-GTGT-TA-T-C-----TATTGTAACATcaatctgtatagtaatttaaaaagtgtttgcgagtgtcaaa
gi|2 : TATTGTTAGAAGAAGGACAAAATTAAAAAGGA-T-T-GTGTACAAAATTTATCA-TA-AT--A--------TGGTA-------------CC----A----G---AT--TATCTTCAAA-ATAT-TCTATTAAGTATATGGTCTCA-TGATTC--AAATTATGCCACCAGACAATCGC-AAAATTA-CAACATTCCCAAATGTAGATTAAACAT-------TTATAAGTCATCCTTTGTCCCATTAGCGATAGGTCAATGGAATTCAATACCCATGGAATG-ACGACAATCAACTTCTCT-------------AAAATATTTTACATTTACCAAAATC-ACAACCTCCTTCTTATTTTTTACACGGAGAGCGCTT--CTGGAATGTGATACAT--ACA------AGATTAAGGCATACTTGTGTACTAAAT-AAAGACTTATTCAG----ATG-GAACATTATTGATAGTCCT-CTGTGTTCTTGTGGTAAAACAGAGGACGCTTATCATTATTTTTTCTCCTGC-ACTAAGTACTCTGCTCACAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATGACTATTGATATT--A---C------------------T--------------G-AC--AATG---A--A---T-TT-TTTCCCCCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-TTGGTCGTTTTTGAGTTAATTTTC-G--TA--TATA-GAATAACA-TATCGAT--AACT-CTGT-GAAATT-C-AAAA-AGTA-TATTTACAGTCCG----AATTT-TTC---ATAA----------GTA--TG-TTA-----------AAATGACCTT-T--GAT-ATCATT-G----G--GAT-TA----------GTTTTATATTCAGATTA-----------TT---TT-GTGT-CA-T-A-----TATTGTAAC
gi|20 : TAAAAAT-A-T-T-AAGCA-------TATCA-TACATTCA--------TTATT-------------CTTCCAA----G---AT--TATCTTCAAATATATCTCT-CCAAGTATACGGTCACATAGAATCCAAAATTATGCCACCAGACAATCGC-AAAATTACCAGCAT
gi|21 : GTTTTTTTTC-G--TA--TATA-GAACAACA-TATCGAT--AACT-CTGT-GAA------------------TTTACA----GTCCGAATTT-TTC---ACAA----------GTA--TG-TTA-----------AAATGACCTT-T--GAT-ATCATT-G----T--GGT-TA----------T---------------A-----------GT---TT-----------------TATTGTAACctgg
gi|22 : aaagtACACT--CCAAAA-C-ACAACCT------TATTTTTCGCATGGAGGGCACTATACCGTAATGTGATACAT--ACATGTACTAGACTAAGGCATAATTGTGTATTAGAT-AAAGACTTATTCAG----A
gi|23 : ATATTATTCGT--ACT------AAACCAAGGTGTAACTGTTTACTAAAC-TAAGATTTACATAA----GCG-TAACATAATCGACAGTCCT-TT-T-TTCTTGTGGACAAAGTGAAGATGTGTATCt
gi|24 : ct--AA-T-CTGT-GAAATTAC-A-----GT--------CC----G----AATTT-TTC---ACAA----------ATA--TG-TTA-----------AAATGACCTT-T--GAT-ATAATT-GCACAT--TGT-TA----------G---------------T-----------TT---TTAGCATATA-T-C-----TATTGTAAC
gi|25 : caata--------AGAT-CTGGTCGTTTTT-AGTTCAATTCC-T--TA--
gi|26 : gTT-C-AAAA-AGTA-TATTTACA----G----AATTT-TTC---ATAC----------GTT--TG-TTA-----------GAATAACCTT-T--GAA-ATCAAT-G----T--AGT-TA----------G---------------A-----------TT---CT-GTGT-CA-T-C-----TATTGTAACATattttttatgtattataattatccaatatatgcattttatttgtactcattatgcaatatatattt
gi|27 : ----G----AATTT-TTT---ATTA----------GTA--TT-TTA-----------AAATGAGCTT-T--GGT-ATCAAT-G----T--GGT-TAATTTTTAACGG---------------A-----------TTATCTT-GCGT-CA-T-C-----TATTGTAACATg
gi|28 : tccGATACATGTACA------AGATTAAGGCATAATTGTGTACTAAAT-AAAGACTTGTTCAG----ATG-TAACATTATTGA
gi|3 : acagtggacagacagagagaTTATTGTTAGAAGAAGGACAAAATTAAAACA-A-T-T-ATGTACAAAATTTATCA-TA-AT--A--------TGGTA-------------CC----A----G---AT--TATCTTCAAA-ATAT-TCTTCCAAGTATACGGTCACA-AGAATC--AAATTATGCCACAAGACAATCCC-AAAATTA-CAGCATTTCCAAATGTATATTAAACAT-------TTATAAGTCATCCTTTGTCCCAGTAGCGATAGGCCAATGGAATTCAGTACCCATAGAACT-AAGACAATCAACTTCTCTGAA--AACTTTCAAAAACAATTTACATTTACCAAAATC-ACAACCTCCTTCTTAATTTTCGCATACAGAGCGCTA--CTGGAATGTGATACAT--ACA------AGATTAAGGCATAATTGTGTACTAAAT-AAAGACTTATTCAG----ATG-TAACATTATTGAAAGTCCT-CTTTGTTCTTGTGGTAAAACAGAGGACGCTTATCATTACTTTTTCTCCTGC-ACTAAGTACTCTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------T--------------G-AC--AATG--AA--A---T-TT-TTTTCCCCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTTT-G--TA--TATA-GAATAGCA-TATCGAT--AA---CTGT-AAAATT-C-AAGA-AGTA-TATTTACA----G----AAATG-TTC---ATAA----------GTA--TG-TTA-----------AAATTACCTT-T--GAT-ATCATT-G----T--AGT-TA----------G---------------A-----------TT---TT-GTAT-CA-T-C-----TATTGTAACAT
gi|30 : A----------ATA--TG-TTA-----------AAATGATCTT-T--CATCGTCATT-G----T--GGT-TA----------G---------------ACTTAA------TT---TT-GTGC-CA-T-C-----TATTGTAACA
gi|32 : ttcttatgtac-----------AAATGATCTA-T--GAT-ATCATT-G----T--GGT-TA----------G---------------AATAAATAAAACTT---TT-GTGT-CA-T-T-----AATTGTAAC
gi|4 : tcat-A-T-TGATGTATTAAATTTACCA-CA-A-----------------------------------------G---AC--AATCTCAAAA-GCAT-ATTACCAAATATACGCTCAGA-CGAATC--AAATTATGTGACTAGGCAGTC-----------------TC---AGTGTCGATTACATAC-------GTACACATCATCCTTTGTCCCAGTAGCGATAGACAAATGGAATTCTTTACCTTTGGAAAT-AAGACAATCTACCACTTTAGGTTC-CTTT--AAAACTGTTTGCAAATGTCAAAAACTAC-GCCTCCCCCATATTTTTCTCGTGGAGAACGCTA--CTGGAACATAATATAC--ACT------AGACTGAGA-ATAATTG------------------------G----ACG-CAATAGCATTGATAGGCCT-TTGTGCACTGGTCGTAAAACAGAAG-------------TTTTTTCTCTTGT-ATAGAATATTCCGGTCCCAGAAATGATTTATTTAA-----TGCCATCTTTAGAATA-GAAAATTTACACATAGTTGATACTCGTGTACAACTCCTTTAG-TATTAGA-------GAAA--------------------------------------------------------AC--AAAA--AATTA---T-TTATTTTTTTTTATAAATGCT-GTA-CA-ATTAGTTT--TAAAG--------AGAT-ATTGCTGTTTTT-AGTTTAATTCC-G--Tg
gi|5 : TATAATGCAC--ACT------AGACTGAGGCATGGTTGTATTTTAAAC-AAAGATTTATTTAG----ATGGTAATAT-ATTGATAGTCCTGCTGTG---CTGTGG-AAAATTGAAGACGCATACCACTTC-TTTTCTCTTGT-GTGAAATATT----TCCCAGAAATGATTTGTTTAA-----TGC-ATATTTAAAATA-GAAAATTTACAC-TAGTTGATAC-CGTGTT--------TTACTTT-TGGG-------GAGAAA--------------AATCC------------------TTTA-----------GTATTAAACG--AA--A---T-TTATTTT---CTA-------TAGTA-CA-ATT-ATTT-CTAAAG--------AGAT-CTGGTCGTTTTT-AGTTCAATTCC-ttg
gi|6 : ACTTTTTCTCC-GC-AC--GGTACTCTGCTCCCAGAAATGATTTATTTAAATAAATGCTATTTTTAGGATGTGATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------TCTATTAATATTACTG-AC--AATGA-AA--A---A-TT-GTTTCCTATA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCG-TTTTAAGTTTATTTTT-G--TA--TATA-GAATAGCA-TATCGAT--AA---CTGT-AAAATT-CAAAGA-AGTA-TATTTACA----G----AAATG-TTC---ATAA----------GTA--TG-TCA-----------AAATGACCTT-T--GAT-ATCATT-G----T--AGT-TA----------G---------------A-----------TT---TT-GTGT-CA-T-C-----TATTGTAACATtttaatttttatgtattatagattatccaatatatgcattgttatttgtactcattatgcaatatatatt
gi|7 : ACTTTTTCTCCTGC-AC--GGTACTCTGCTCCCAGAAATGATTTATTTAAATAAATGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------TCTATTAATATTACTG-AC--AATG--AA--AAA-TGTT-TTTTCCTATA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTTT-G--TA--TATA-GAATAGCA-TATCGAT--AA---CTGT-AAAATT-C-AAGA-AGTA-TATTTACA----G----AA-AT-GTC---ATAA----------GTA--TG-TCA-----------AAATGA-CTT-T--GAT-ATCATT-G----T--AGT-TA----------G---------------A-----------TT---TT-GTGT-CA-TAC-----TATTGTA
gi|8 : GTGAAACAT--ACA------AGATTAAGGCATAATTGTGTACTAAAT-AAAGACTTGTTCAG----ATG-TAATATTATTGATAGTCCT-CTGTGTTCTTGTGGTAAAACAGAGGACGCTTATCGTTACTTTTTCTCCTGC-ACTAAGTACTCTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTGTAGGATG-GATAATTTATACATAGTAGACACTCGTGTG--------TTAC-TA-TGGGGAGAATAGAGATG--------------A---CTCTATTAATTAGTATTATT--------------G-AC--AATGAAAA--A---T-TG-TTTT--CCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTca
gi|9 : catagtgcatacaattagaCTTGTTTTTCTGCCACTAGGAATTCTACTCC-AGAAATGATTTATTTAA-----TGCTA-TTTTAGAATG-GATAATTT-----------------GTCTG--------TTAC-TA-TAGC-------AAGATGACTCATTAGTATT-A---C------------------T--------------G-AC--AATG--AA--A---A-TT-TATCTTCCTG-------T-GTA-CA-ATT-GTTT-ATAAAA--------CGAT-AGGGTAGTTTTTCGGTTTATTTTT-G--TATCTGTA-CCATTGCA-TATCAAC--AATT-CTGT-GAATTT-C-AAGA-AGTA-TATTTTTAATCTG----AATCT-TTCATTATAATCTATGTAATATA--TT-TTA-----------AAATGACCTT-T--GAT-ATCATT-----------------------------------------A-----------TT---TT-GTGA-CA-T-CAATATTATTGTAACAT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTTATTTAAATCAGTTACAGTTCAAGTCAGTTCTAAAACTTTAACTTTTATTATACTACCATGTACTTCAATAGACACTCGCGGGAATATGCTCAGAATGCAAGGTGGATGTCACAATCAAGATCCGAAAAACTTGAAAAATGACAACTTGCAGCGCAAGATTAGTCACTGGTGACTTATTGACGTCACCGGAATCTCTGTATTTCGAAACTGGGTGGACCACTTATTGAAACATTAGGGATGAATGGACAAAATTAGAGAATAACTATACACTGCAATAAAATATATCATTATATGGA
Unaligned ( gi|14 ): CAAGAAGAATTTAAGGTCAATTGCAAAACTTTATCACTTTTATACGCTACTTTTATAAGGCCGTTGCTAGAATATGCATCTGAGGTATGGGGTGGGTGTTCAAATCAAGATTCAGAAAAACTAGAAAAATTACAGTTAGCAGCCGCGAGGATAGTCACAGGTATTACCTACTTGGCATCGTGAGACTCTTTCTATTTCGAAACTGGGTGGGAACCGCT
Unaligned ( gi|19 ): GTTAAAAATTACAGTTTAAGGTCCTGAAACTTTATCACTTTTATACAGTACTTTTAAAAGTCTTCCTTTAATGTTGGAATATGCATCTGAAGTATGGGATGGGTGTTCAATCATTTCAAATTTAAAAAAAAAAAAAA
Unaligned ( gi|29 ): GATACTTTGTTATTTCGCAATTTTATACACTACTTTCATAAGACCTCATTTTGGAATATGCATCCGAAGTATGGATTGGG
Unaligned ( gi|31 ): ATATCAATATTATTATTCATACTAAACTAAGGTATTTAACTGTTTACTCAATGAAACTATGATTTACACAAG
Unaligned ( gi|33 ): AGCTGGTCAATATACATCGATTCGTTATATTAGCCAACGCGTATATAAAAAAAACCCTGG
Unaligned ( gi|34 ): TTATACTGAACTAAGGTATAACTGTTTACTCAACTGTAATTTACA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 77777777777777777777777777777777777777777777 11 2222222 333333 1 1111111 11111 22222 11111111 1111111 3333333333333333333333333333333333333333333333333333 11 11111 111 1111111 11111111 222 222222222 1111111111 11111111111 66666666666666666666666666666666666666
lowQualScore : 0 0 99 5 5 5 6 6 77777777777777777777777777777777777777777777 99 00 6 7 66 77 3 6 0 0 5 77 1 1111111 1 1 1 8 555555 55 1 1 6 2 1 99 2 55 2222222 0 2 4 0 3 00000 4 1 5 00 777 4 7 1 22222 4 0 66666666 4 4 4444444 5555555555555555555555555555555555555555555555555555 4 55 55 55 22222 8 111 1111111 3 3 3 3 3 55555555 3 7 3 77 55 4 9 4 55 777 3 3 3 3 44 555555555 0 3 555 2222222222 33 2 22222222222 2 66 2 2 5555 33 2 55555555555555555555555555555555555555 444 2 2 2 2 66666
lowQualScore : . . .. . . . . . ............................................ .. .. . . .. .. . . . . . .. . ....... . . . . ...... .. . . . . . .. . .. ....... . . . . . ..... . . . .. ... . . . ..... . . ........ . . ....... .................................................... . .. .. .. ..... . ... ....... . . . . . ........ . . . .. .. . . . .. ... . . . . .. ......... . . ... .......... .. . ........... . .. . . .... .. . ...................................... ... . . . . .....
lowQualScore : 8 8 00 7 7 7 7 7 00000000000000000000000000000000000000000000 22 88 7 8 77 99 0 6 1 7 7 11 0 7777777 0 0 0 0 888888 66 5 7 7 5 5 22 5 55 7777777 5 3 0 7 2 11111 4 0 0 55 111 4 4 1 22222 4 1 11111111 4 4 4444444 8888888888888888888888888888888888888888888888888888 0 55 00 55 77777 0 222 8888888 6 6 6 6 6 44444444 3 9 1 99 00 0 6 0 00 888 6 3 3 3 55 888888888 8 1 444 5555555555 99 9 77777777777 7 33 7 7 7777 77 7 77777777777777777777777777777777777777 777 7 7 7 7 77777
consensus : TTATTGTTAGAAGAAGGACAAAATTAAAAAN-A-T-T-ATGTACAAAATTTATCA-TA-AT--A--------TGGTA-------------CT----A----G---AT--TATCTTCAAA-ATAT-TCTACCAAGTATACGGTCACAN-GAATC--AAATTATGCCACCAGACAATCGC-AAAATTA-CAGCATTCCCAAATGTNGATTAAACAT-------TTATAAGTCATCCTTTGTCCCAGTAGCGATAGGCNAATGGAATTCANTACCCATGGAANTAAGA-CAATCAACTTCTCTGAATTNCTTTCAAAAACAATTTACATTTACCAAAATC-ACAACCTCCTTCTTATTTTTCGCATGGAGAGCGCTA--CTGGAATGTGATACAT--ACA------AGACTAAGGCATAATTGTGTACTAAATAAA-GACTTATTCAGAC----G-TAACATTATTGATAGTCCT-CTGTGTTCTTGTGGTAAAACAGAGGACGCTTATCATTACTTTTTCTCCTGC-ACTAAGTACTCTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------T--------------G-AC--AATG--AA--A---T-TT-TTTTCCCCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTTC-G--TA--TATA-GAATAGCA-TATCGAT--AA-T-CTGT-GAAATT-C-AAGA-AGTA-TATTTACA----G----AATTT-TTC---ATAA----------GTA--TG-TTA-----------AAATGACCTT-T--GAT-ATCATT-G----T--GGT-TA----------G---------------A-----------TT---TT-GTGT-CA-T-C-----TATTGTAACAT
Reference ( family-3299 ) : TTATTGTTAGAAGAAGGACAAAATTAAAAAN-A-T-T-ATGTACAAAATTTATCA-TA-AT--A--------TGGTA-------------CT----A----G---AT--TATCTTCAAA-ATAT-TCTACCAAGTATACGGTCACAN-GAATC--AAATTATGCCACCAGACAATCGC-AAAATTA-CAGCATTCCCAAATGTNGATTAAACAT-------TTATAAGTCATCCTTTGTCCCAGTAGCGATAGGCNAATGGAATTCANTACCCATGGAANTAAGA-CAATCAACTTCTCTGAATTNCTTTCAAAAACAATTTACATTTACCAAAATC-ACAACCTCCTTCTTATTTTTCGCATGGAGAGCGCTA--CTGGAATGTGATACAT--ACA------AGACTAAGGCATAATTGTGTACTAAATAAA-GACTTATTCAGAC----G-TAACATTATTGATAGTCCT-CTGTGTTCTTGTGGTAAAACAGAGGACGCTTATCATTACTTTTTCTCCTGC-ACTAAGTACTCTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------T--------------G-AC--AATG--AA--A---T-TT-TTTTCCCCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTTC-G--TA--TATA-GAATAGCA-TATCGAT--AA-T-CTGT-GAAATT-C-AAGA-AGTA-TATTTACA----G----AATTT-TTC---ATAA----------GTA--TG-TTA-----------AAATGACCTT-T--GAT-ATCATT-G----T--GGT-TA----------G---------------A-----------TT---TT-GTGT-CA-T-C-----TATTGTAACAT
gi|1 : TTATTGT-ATAAGAAG--CAAAATTAAAAAC-A-TAT-ATGTACAAAATTT--CAATA-AT--A--------TG-TA-------------CT----A----G---AT--TATCTTCAAA--TAT-TCTTCCAAGTATATGGTCACAA-GAATC--AAATTATGC-AC-AGACAATCGC-AAAATTA-CAGCATTCCCAAATGTAGATTAAACAT-------TTATAAGTCATCCTTTGTCCCAGCA-CGA-AGGCCAATGGAACTCAGTACCCATAGAACTAAGA-CAATCAACTTCTCTGAA--ACTTTCAAAAACAATTTACATTTACCTAAATC-ACAACCTCCTTCTTCTTTTTCGCATGGAGAGCGCTA--CTG-AATGTGATACAC--ACA------AGATTAAG-CATAATTGTGTA-TAAATAAAAGACT-ATT-AGATCTATG-TAACATTATTGATAGTCCT-ATGTGTTCTTGTGGTAAAACAGAGGAC-CTTATCATTACTTTTTCTCCTGC-ACTAAGTACT--GCTCCCAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GA-ATGACTCTATTAATATTA---C------------------T--------------G-AC--AATGAAAA--A---T-TG-TTTT--CCTA-------T-GTA-------------ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTT--G--TA--TATT-GAA-AGCA-TATCGAT--AA---CTGT-AAAATT-C-AAGA-AGTA-TATTTACA----G----AAATG-TTC---ATAA----------TTA--TG-TCATTAATTATGTTAAATGACCTT-T--GAT-ATCATTGG----T--AG--TA----------G---------------A------------T---TT-GTAT-CA-T-C-----TATTGT-ACAT
gi|11 : ctggtcggcatacattggactgtcaaaattaccaaatgcttaataaaaaaaactgggattgcttaaaaaattacagtttaagggtcaattgcaaaactttatcacttttatactacttttataggccgtcgctagaatatgcatctgaggtagggggtgggtgttcaatcaagattcagaaaaactagaaaaattacagttagcagccgcgaggattatccacaggtcttacttccttggcatcgcgtgactctctcattttgaacgggtggaacgcgcTTACTGTTAAAAGAAGGGTAAGATTAAACAC-AAT-T-ATGTACAAAATTTATCA-TA-AT--ATGGTACTTTGGTATCTCCAAAGTATTCT----ACCAAGTATATGGTATCTCCAAA-GTAT-TCTACCAAGTATACGGTCGCAT-GAATC--AAATTACGTCACCAGACAATCGCTAAAATAA-CAGCATTCCCAAACGg
gi|12 : aactagaaaaattgcagttggcagctacaatgttagtcacaggtcttactttcttgacatcacgagactctctctatttcgaaactgggtgggaactacAATGTTGATTAAACAT-------TTATAAATCACCCTTT-TCCAATTGGCGATAGATAAATGAAATTCACTACCTATGGAAATAAAAACAATCAACTTTTCT-AATTTCCTTCAAAAACAATTCAATTTTCCCAAAA-C-ACAACC----CCTTATTTTTCGCATGGAAAACGCTA--CTGGAATG-----------------------TAGGACACAATTATGTATTAGATA--------------AC----G-TAACATTATTGATAATCCT-CTGTGTTCTTGCGGT-AAACAGAGGAC----ATCACTACTTT
gi|13 : --------------A---C------------------T--------------G-AC--AATG--AA--AACAT-TG-TTTTCC--TA-------T-GTAGCACATT-GTTT-ATAAAAT-------AGATTCTGGTCGTTCTTAAGTTTATTTTCTGCTCA--CACATGAA-AGCAGTATCGAT--AA---CTGT-AGAAAT-A-AAGACAGT--TATTTACA----GA---AATGT-TCC---ATAA----------TTGATTGATTA-----------AAATGACTTTGTA-GAT-AGTATA-G----TAAGCTATA----------G---------------AC----------TT---TT-GTAT-CA-T-C-----TATTGTA
gi|15 : actcgtattaatatA-------T-G-A-CA-ATG-ATTTCATAAAATGTATTTTAGAA-CTAGTAAGCTTTAAGTTTATTTTC-GC-TA--TATA-AAA---CA-TATCGATTAAG-T-CTGTTGAAATT-C-AAAA-AGTA-T--TTACA----ACCC-AATTGATTC---ACA-----------GTA--TG-TTA-----------AACTGACCTT-TTTGAT-ATCATG-A----T--GGT-TA----------GTTTTTAACAGATT--A-----------TT---TT-GTGT-CAGT-C-----TATca
gi|16 : TTCTTGTTAGAGGAATGACAAA----------A-T-T-ATGTACAAAATTTgaaca
gi|17 : atctgcctctgaagtagtggttttgggtgttcaaatcaagattctgaaaaaaattacagcttgcagcagcaagattagtttctggactaacttcattggcgtcacgggaacttcgttattttgaaactggataggaaccac-GAATC--AAATT--GTTACGAGACG---GT-AAAGTT--------TCCCAAGTTTTAATTAAATAGGAACAAATTACTAGT-ATATATTGTCCCTGTAGTGATAGATGAGTGGCATTCTATACCTTTGGAA
gi|18 : GTTTATTTTC-G--TA--TATA--------A-CATCGAT--AA-TTCTGT-GAAATT-C-AAAA-AGTAATATTTACA----GTCCAAATTT-TTC---ATTA----------GCA--TG-TTA-----------TAATGACCTT-T--GCT-ATCATT-G----T--GGT-TA----------GTTTTTAACAGATT--A-----------TT---TT-GTGT-TA-T-C-----TATTGTAACATcaatctgtatagtaatttaaaaagtgtttgcgagtgtcaaa
gi|2 : TATTGTTAGAAGAAGGACAAAATTAAAAAGGA-T-T-GTGTACAAAATTTATCA-TA-AT--A--------TGGTA-------------CC----A----G---AT--TATCTTCAAA-ATAT-TCTATTAAGTATATGGTCTCAT-GATTC--AAATTATGCCACCAGACAATCGC-AAAATTA-CAACATTCCCAAATGTAGATTAAACAT-------TTATAAGTCATCCTTTGTCCCATTAGCGATAGGTCAATGGAATTCAATACCCATGGAATGACGA-CAATCAACTTCTCT------------AAAATATTTTACATTTACCAAAATC-ACAACCTCCTTCTTATTTTTTACACGGAGAGCGCTT--CTGGAATGTGATACAT--ACA------AGATTAAGGCATACTTGTGTACTAAATAAA-GACTTATTCAGAT----G-GAACATTATTGATAGTCCT-CTGTGTTCTTGTGGTAAAACAGAGGACGCTTATCATTATTTTTTCTCCTGC-ACTAAGTACTCTGCTCACAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATGACTATTGATATT--A---C------------------T--------------G-AC--AATG---A--A---T-TT-TTTCCCCCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-TTGGTCGTTTTTGAGTTAATTTTC-G--TA--TATA-GAATAACA-TATCGAT--AACT-CTGT-GAAATT-C-AAAA-AGTA-TATTTACAGTCCG----AATTT-TTC---ATAA----------GTA--TG-TTA-----------AAATGACCTT-T--GAT-ATCATT-G----G--GAT-TA----------GTTTTATATTCAGATTA-----------TT---TT-GTGT-CA-T-A-----TATTGTAAC
gi|20 : TAAAAAT-A-T-T-AAGCA-------TATCA-TACATTCA--------TTATT-------------CTTCCAA----G---AT--TATCTTCAAATATATCTCT-CCAAGTATACGGTCACATAGAATCCAAAATTATGCCACCAGACAATCGC-AAAATTACCAGCAT
gi|21 : GTTTTTTTTC-G--TA--TATA-GAACAACA-TATCGAT--AACT-CTGT-GAA------------------TTTACA----GTCCGAATTT-TTC---ACAA----------GTA--TG-TTA-----------AAATGACCTT-T--GAT-ATCATT-G----T--GGT-TA----------T---------------A-----------GT---TT-----------------TATTGTAACctgg
gi|22 : aaagtACACT--CCAAAA-C-ACAACCT------TATTTTTCGCATGGAGGGCACTATACCGTAATGTGATACAT--ACATGTACTAGACTAAGGCATAATTGTGTATTAGATAAA-GACTTATTCAGA
gi|23 : ATATTATTCGT--ACT------AAACCAAGGTGTAACTGTTTACTAAACTAA-GATTTACATAAGC----G-TAACATAATCGACAGTCCT-TT-T-TTCTTGTGGACAAAGTGAAGATGTGTATCt
gi|24 : ct--AA-T-CTGT-GAAATTAC-A-----GT--------CC----G----AATTT-TTC---ACAA----------ATA--TG-TTA-----------AAATGACCTT-T--GAT-ATAATT-GCACAT--TGT-TA----------G---------------T-----------TT---TTAGCATATA-T-C-----TATTGTAAC
gi|25 : caata--------AGAT-CTGGTCGTTTTT-AGTTCAATTCC-T--TA--
gi|26 : gTT-C-AAAA-AGTA-TATTTACA----G----AATTT-TTC---ATAC----------GTT--TG-TTA-----------GAATAACCTT-T--GAA-ATCAAT-G----T--AGT-TA----------G---------------A-----------TT---CT-GTGT-CA-T-C-----TATTGTAACATattttttatgtattataattatccaatatatgcattttatttgtactcattatgcaatatatattt
gi|27 : ----G----AATTT-TTT---ATTA----------GTA--TT-TTA-----------AAATGAGCTT-T--GGT-ATCAAT-G----T--GGT-TAATTTTTAACGG---------------A-----------TTATCTT-GCGT-CA-T-C-----TATTGTAACATg
gi|28 : tccGATACATGTACA------AGATTAAGGCATAATTGTGTACTAAATAAA-GACTTGTTCAGAT----G-TAACATTATTGA
gi|3 : acagtggacagacagagagaTTATTGTTAGAAGAAGGACAAAATTAAAACA-A-T-T-ATGTACAAAATTTATCA-TA-AT--A--------TGGTA-------------CC----A----G---AT--TATCTTCAAA-ATAT-TCTTCCAAGTATACGGTCACAA-GAATC--AAATTATGCCACAAGACAATCCC-AAAATTA-CAGCATTTCCAAATGTATATTAAACAT-------TTATAAGTCATCCTTTGTCCCAGTAGCGATAGGCCAATGGAATTCAGTACCCATAGAACTAAGA-CAATCAACTTCTCTGAAA-ACTTTCAAAAACAATTTACATTTACCAAAATC-ACAACCTCCTTCTTAATTTTCGCATACAGAGCGCTA--CTGGAATGTGATACAT--ACA------AGATTAAGGCATAATTGTGTACTAAATAAA-GACTTATTCAGAT----G-TAACATTATTGAAAGTCCT-CTTTGTTCTTGTGGTAAAACAGAGGACGCTTATCATTACTTTTTCTCCTGC-ACTAAGTACTCTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------T--------------G-AC--AATG--AA--A---T-TT-TTTTCCCCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTTT-G--TA--TATA-GAATAGCA-TATCGAT--AA---CTGT-AAAATT-C-AAGA-AGTA-TATTTACA----G----AAATG-TTC---ATAA----------GTA--TG-TTA-----------AAATTACCTT-T--GAT-ATCATT-G----T--AGT-TA----------G---------------A-----------TT---TT-GTAT-CA-T-C-----TATTGTAACAT
gi|30 : A----------ATA--TG-TTA-----------AAATGATCTT-T--CATCGTCATT-G----T--GGT-TA----------G---------------ACTTAA------TT---TT-GTGC-CA-T-C-----TATTGTAACA
gi|32 : ttcttatgtac-----------AAATGATCTA-T--GAT-ATCATT-G----T--GGT-TA----------G---------------AATAAATAAAACTT---TT-GTGT-CA-T-T-----AATTGTAAC
gi|4 : tcat-A-T-TGATGTATTAAATTTACCA-CA-A-----------------------------------------G---AC--AATCTCAAAA-GCAT-ATTACCAAATATACGCTCAGAC-GAATC--AAATTATGTGACTAGGCAGTC-----------------TC---AGTGTCGATTACATAC-------GTACACATCATCCTTTGTCCCAGTAGCGATAGACAAATGGAATTCTTTACCTTTGGAAATAAGA-CAATCTACCACTTTAGGTTCCTTT--AAAACTGTTTGCAAATGTCAAAAACTAC-GCCTCCCCCATATTTTTCTCGTGGAGAACGCTA--CTGGAACATAATATAC--ACT------AGACTGAGA-ATAATTG------------------------GAC----G-CAATAGCATTGATAGGCCT-TTGTGCACTGGTCGTAAAACAGAAG-------------TTTTTTCTCTTGT-ATAGAATATTCCGGTCCCAGAAATGATTTATTTAA-----TGCCATCTTTAGAATA-GAAAATTTACACATAGTTGATACTCGTGTACAACTCCTTTAG-TATTAGA-------GAAA--------------------------------------------------------AC--AAAA--AATTA---T-TTATTTTTTTTTATAAATGCT-GTA-CA-ATTAGTTT--TAAAG--------AGAT-ATTGCTGTTTTT-AGTTTAATTCC-G--Tg
gi|5 : TATAATGCAC--ACT------AGACTGAGGCATGGTTGTATTTTAAACAAA-GATTTATTTAGAT----GGTAATAT-ATTGATAGTCCTGCTGTG---CTGTGG-AAAATTGAAGACGCATACCACTTC-TTTTCTCTTGT-GTGAAATATT----TCCCAGAAATGATTTGTTTAA-----TGC-ATATTTAAAATA-GAAAATTTACAC-TAGTTGATAC-CGTGTT--------TTACTTT-TGGG-------GAGAAA--------------AATCC------------------TTTA-----------GTATTAAACG--AA--A---T-TTATTTT---CTA-------TAGTA-CA-ATT-ATTT-CTAAAG--------AGAT-CTGGTCGTTTTT-AGTTCAATTCC-ttg
gi|6 : ACTTTTTCTCC-GC-AC--GGTACTCTGCTCCCAGAAATGATTTATTTAAATAAATGCTATTTTTAGGATGTGATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------TCTATTAATATTACTG-AC--AATGA-AA--A---A-TT-GTTTCCTATA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCG-TTTTAAGTTTATTTTT-G--TA--TATA-GAATAGCA-TATCGAT--AA---CTGT-AAAATT-CAAAGA-AGTA-TATTTACA----G----AAATG-TTC---ATAA----------GTA--TG-TCA-----------AAATGACCTT-T--GAT-ATCATT-G----T--AGT-TA----------G---------------A-----------TT---TT-GTGT-CA-T-C-----TATTGTAACATtttaatttttatgtattatagattatccaatatatgcattgttatttgtactcattatgcaatatatatt
gi|7 : ACTTTTTCTCCTGC-AC--GGTACTCTGCTCCCAGAAATGATTTATTTAAATAAATGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------TCTATTAATATTACTG-AC--AATG--AA--AAA-TGTT-TTTTCCTATA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTTT-G--TA--TATA-GAATAGCA-TATCGAT--AA---CTGT-AAAATT-C-AAGA-AGTA-TATTTACA----G----AA-AT-GTC---ATAA----------GTA--TG-TCA-----------AAATGA-CTT-T--GAT-ATCATT-G----T--AGT-TA----------G---------------A-----------TT---TT-GTGT-CA-TAC-----TATTGTA
gi|8 : GTGAAACAT--ACA------AGATTAAGGCATAATTGTGTACTAAATAAA-GACTTGTTCAGAT----G-TAATATTATTGATAGTCCT-CTGTGTTCTTGTGGTAAAACAGAGGACGCTTATCGTTACTTTTTCTCCTGC-ACTAAGTACTCTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTGTAGGATG-GATAATTTATACATAGTAGACACTCGTGTG--------TTAC-TA-TGGGGAGAATAGAGATG--------------A---CTCTATTAATTAGTATTATT--------------G-AC--AATGAAAA--A---T-TG-TTTT--CCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTca
gi|9 : catagtgcatacaattagaCTTGTTTTTCTGCCACTAGGAATTCTACTCC-AGAAATGATTTATTTAA-----TGCTA-TTTTAGAATG-GATAATTT-----------------GTCTG--------TTAC-TA-TAGC-------AAGATGACTCATTAGTATT-A---C------------------T--------------G-AC--AATG--AA--A---A-TT-TATCTTCCTG-------T-GTA-CA-ATT-GTTT-ATAAAA--------CGAT-AGGGTAGTTTTTCGGTTTATTTTT-G--TATCTGTA-CCATTGCA-TATCAAC--AATT-CTGT-GAATTT-C-AAGA-AGTA-TATTTTTAATCTG----AATCT-TTCATTATAATCTATGTAATATA--TT-TTA-----------AAATGACCTT-T--GAT-ATCATT-----------------------------------------A-----------TT---TT-GTGA-CA-T-CAATATTATTGTAACAT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTTATTTAAATCAGTTACAGTTCAAGTCAGTTCTAAAACTTTAACTTTTATTATACTACCATGTACTTCAATAGACACTCGCGGGAATATGCTCAGAATGCAAGGTGGATGTCACAATCAAGATCCGAAAAACTTGAAAAATGACAACTTGCAGCGCAAGATTAGTCACTGGTGACTTATTGACGTCACCGGAATCTCTGTATTTCGAAACTGGGTGGACCACTTATTGAAACATTAGGGATGAATGGACAAAATTAGAGAATAACTATACACTGCAATAAAATATATCATTATATGGA
Unaligned ( gi|14 ): CAAGAAGAATTTAAGGTCAATTGCAAAACTTTATCACTTTTATACGCTACTTTTATAAGGCCGTTGCTAGAATATGCATCTGAGGTATGGGGTGGGTGTTCAAATCAAGATTCAGAAAAACTAGAAAAATTACAGTTAGCAGCCGCGAGGATAGTCACAGGTATTACCTACTTGGCATCGTGAGACTCTTTCTATTTCGAAACTGGGTGGGAACCGCT
Unaligned ( gi|19 ): GTTAAAAATTACAGTTTAAGGTCCTGAAACTTTATCACTTTTATACAGTACTTTTAAAAGTCTTCCTTTAATGTTGGAATATGCATCTGAAGTATGGGATGGGTGTTCAATCATTTCAAATTTAAAAAAAAAAAAAA
Unaligned ( gi|29 ): GATACTTTGTTATTTCGCAATTTTATACACTACTTTCATAAGACCTCATTTTGGAATATGCATCCGAAGTATGGATTGGG
Unaligned ( gi|31 ): ATATCAATATTATTATTCATACTAAACTAAGGTATTTAACTGTTTACTCAATGAAACTATGATTTACACAAG
Unaligned ( gi|33 ): AGCTGGTCAATATACATCGATTCGTTATATTAGCCAACGCGTATATAAAAAAAACCCTGG
Unaligned ( gi|34 ): TTATACTGAACTAAGGTATAACTGTTTACTCAACTGTAATTTACA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 77777777777777777777777777777777777777777777 11 2222222 333333 1 1111111 11111 22222 11111111 1111111 3333333333333333333333333333333333333333333333333333 11 11111 111 1111111 11111111 222 222222222 1111111111 11111111111 66666666666666666666666666666666666666
lowQualScore : 0 0 99 5 5 5 6 6 77777777777777777777777777777777777777777777 99 00 6 7 66 77 3 6 0 0 5 77 1 1111111 1 1 1 8 555555 55 1 1 6 2 1 99 2 55 2222222 0 2 4 0 3 00000 4 1 5 00 777 4 7 1 22222 4 0 66666666 4 4 4444444 5555555555555555555555555555555555555555555555555555 4 55 55 55 22222 8 111 1111111 3 3 3 3 3 55555555 3 7 3 77 55 4 9 4 55 777 3 3 3 3 44 555555555 0 3 555 2222222222 33 2 22222222222 2 66 2 2 5555 33 2 55555555555555555555555555555555555555 444 2 2 2 2 66666
lowQualScore : . . .. . . . . . ............................................ .. .. . . .. .. . . . . . .. . ....... . . . . ...... .. . . . . . .. . .. ....... . . . . . ..... . . . .. ... . . . ..... . . ........ . . ....... .................................................... . .. .. .. ..... . ... ....... . . . . . ........ . . . .. .. . . . .. ... . . . . .. ......... . . ... .......... .. . ........... . .. . . .... .. . ...................................... ... . . . . .....
lowQualScore : 8 8 00 7 7 7 7 7 00000000000000000000000000000000000000000000 22 88 7 8 77 99 0 6 1 7 7 11 0 7777777 0 0 0 0 888888 66 5 7 7 5 5 22 5 55 7777777 5 3 0 7 2 11111 4 0 0 55 111 4 4 1 22222 4 1 11111111 4 4 4444444 8888888888888888888888888888888888888888888888888888 0 55 00 55 77777 0 222 8888888 6 6 6 6 6 44444444 3 9 1 99 00 0 6 0 00 888 6 3 3 3 55 888888888 8 1 444 5555555555 99 9 77777777777 7 33 7 7 7777 77 7 77777777777777777777777777777777777777 777 7 7 7 7 77777
consensus : TTATTGTTAGAAGAAGGACAAAATTAAAAAN-A-T-T-ATGTACAAAATTTATCA-TA-AT--A--------TGGTA-------------CT----A----G---AT--TATCTTCAAA-ATAT-TCTACCAAGTATACGGTCACAN-GAATC--AAATTATGCCACCAGACAATCGC-AAAATTA-CAGCATTCCCAAATGTNGATTAAACAT-------TTATAAGTCATCCTTTGTCCCAGTAGCGATAGGCNAATGGAATTCANTACCCATGGAANTAAGA-CAATCAACTTCTCTGAATTNCTTTCAAAAACAATTTACATTTACCAAAATC-ACAACCTCCTTCTTATTTTTCGCATGGAGAGCGCTA--CTGGAATGTGATACAT--ACA------AGACTAAGGCATAATTGTGTACTAAATAAA-GACTTATTCAGAC----G-TAACATTATTGATAGTCCT-CTGTGTTCTTGTGGTAAAACAGAGGACGCTTATCATTACTTTTTCTCCTGC-ACTAAGTACTCTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------T--------------G-AC--AATG--AA--A---T-TT-TTTTCCCCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTTC-G--TA--TATA-GAATAGCA-TATCGAT--AA-T-CTGT-GAAATT-C-AAGA-AGTA-TATTTACA----G----AATTT-TTC---ATAA----------GTA--TG-TTA-----------AAATGACCTT-T--GAT-ATCATT-G----T--GGT-TA----------G---------------A-----------TT---TT-GTGT-CA-T-C-----TATTGTAACAT
Reference ( family-3299 ) : TTATTGTTAGAAGAAGGACAAAATTAAAAAN-A-T-T-ATGTACAAAATTTATCA-TA-AT--A--------TGGTA-------------CT----A----G---AT--TATCTTCAAA-ATAT-TCTACCAAGTATACGGTCACAN-GAATC--AAATTATGCCACCAGACAATCGC-AAAATTA-CAGCATTCCCAAATGTNGATTAAACAT-------TTATAAGTCATCCTTTGTCCCAGTAGCGATAGGCNAATGGAATTCANTACCCATGGAANTAAGA-CAATCAACTTCTCTGAATTNCTTTCAAAAACAATTTACATTTACCAAAATC-ACAACCTCCTTCTTATTTTTCGCATGGAGAGCGCTA--CTGGAATGTGATACAT--ACA------AGACTAAGGCATAATTGTGTACTAAATAAA-GACTTATTCAGAC----G-TAACATTATTGATAGTCCT-CTGTGTTCTTGTGGTAAAACAGAGGACGCTTATCATTACTTTTTCTCCTGC-ACTAAGTACTCTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------T--------------G-AC--AATG--AA--A---T-TT-TTTTCCCCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTTC-G--TA--TATA-GAATAGCA-TATCGAT--AA-T-CTGT-GAAATT-C-AAGA-AGTA-TATTTACA----G----AATTT-TTC---ATAA----------GTA--TG-TTA-----------AAATGACCTT-T--GAT-ATCATT-G----T--GGT-TA----------G---------------A-----------TT---TT-GTGT-CA-T-C-----TATTGTAACAT
gi|1 : TTATTGT-ATAAGAAG--CAAAATTAAAAAC-A-TAT-ATGTACAAAATTT--CAATA-AT--A--------TG-TA-------------CT----A----G---AT--TATCTTCAAA--TAT-TCTTCCAAGTATATGGTCACAA-GAATC--AAATTATGC-AC-AGACAATCGC-AAAATTA-CAGCATTCCCAAATGTAGATTAAACAT-------TTATAAGTCATCCTTTGTCCCAGCA-CGA-AGGCCAATGGAACTCAGTACCCATAGAACTAAGA-CAATCAACTTCTCTGAA--ACTTTCAAAAACAATTTACATTTACCTAAATC-ACAACCTCCTTCTTCTTTTTCGCATGGAGAGCGCTA--CTG-AATGTGATACAC--ACA------AGATTAAG-CATAATTGTGTA-TAAATAAAAGACT-ATT-AGATCTATG-TAACATTATTGATAGTCCT-ATGTGTTCTTGTGGTAAAACAGAGGAC-CTTATCATTACTTTTTCTCCTGC-ACTAAGTACT--GCTCCCAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GA-ATGACTCTATTAATATTA---C------------------T--------------G-AC--AATGAAAA--A---T-TG-TTTT--CCTA-------T-GTA-------------ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTT--G--TA--TATT-GAA-AGCA-TATCGAT--AA---CTGT-AAAATT-C-AAGA-AGTA-TATTTACA----G----AAATG-TTC---ATAA----------TTA--TG-TCATTAATTATGTTAAATGACCTT-T--GAT-ATCATTGG----T--AG--TA----------G---------------A------------T---TT-GTAT-CA-T-C-----TATTGT-ACAT
gi|11 : ctggtcggcatacattggactgtcaaaattaccaaatgcttaataaaaaaaactgggattgcttaaaaaattacagtttaagggtcaattgcaaaactttatcacttttatactacttttataggccgtcgctagaatatgcatctgaggtagggggtgggtgttcaatcaagattcagaaaaactagaaaaattacagttagcagccgcgaggattatccacaggtcttacttccttggcatcgcgtgactctctcattttgaacgggtggaacgcgcTTACTGTTAAAAGAAGGGTAAGATTAAACAC-AAT-T-ATGTACAAAATTTATCA-TA-AT--ATGGTACTTTGGTATCTCCAAAGTATTCT----ACCAAGTATATGGTATCTCCAAA-GTAT-TCTACCAAGTATACGGTCGCAT-GAATC--AAATTACGTCACCAGACAATCGCTAAAATAA-CAGCATTCCCAAACGg
gi|12 : aactagaaaaattgcagttggcagctacaatgttagtcacaggtcttactttcttgacatcacgagactctctctatttcgaaactgggtgggaactacAATGTTGATTAAACAT-------TTATAAATCACCCTTT-TCCAATTGGCGATAGATAAATGAAATTCACTACCTATGGAAATAAAAACAATCAACTTTTCT-AATTTCCTTCAAAAACAATTCAATTTTCCCAAAA-C-ACAACC----CCTTATTTTTCGCATGGAAAACGCTA--CTGGAATG-----------------------TAGGACACAATTATGTATTAGATA--------------AC----G-TAACATTATTGATAATCCT-CTGTGTTCTTGCGGT-AAACAGAGGAC----ATCACTACTTT
gi|13 : --------------A---C------------------T--------------G-AC--AATG--AA--AACAT-TG-TTTTCC--TA-------T-GTAGCACATT-GTTT-ATAAAAT-------AGATTCTGGTCGTTCTTAAGTTTATTTTCTGCTCA--CACATGAA-AGCAGTATCGAT--AA---CTGT-AGAAAT-A-AAGACAGT--TATTTACA----GA---AATGT-TCC---ATAA----------TTGATTGATTA-----------AAATGACTTTGTA-GAT-AGTATA-G----TAAGCTATA----------G---------------AC----------TT---TT-GTAT-CA-T-C-----TATTGTA
gi|15 : actcgtattaatatA-------T-G-A-CA-ATG-ATTTCATAAAATGTATTTTAGAA-CTAGTAAGCTTTAAGTTTATTTTC-GC-TA--TATA-AAA---CA-TATCGATTAAG-T-CTGTTGAAATT-C-AAAA-AGTA-T--TTACA----ACCC-AATTGATTC---ACA-----------GTA--TG-TTA-----------AACTGACCTT-TTTGAT-ATCATG-A----T--GGT-TA----------GTTTTTAACAGATT--A-----------TT---TT-GTGT-CAGT-C-----TATca
gi|16 : TTCTTGTTAGAGGAATGACAAA----------A-T-T-ATGTACAAAATTTgaaca
gi|17 : atctgcctctgaagtagtggttttgggtgttcaaatcaagattctgaaaaaaattacagcttgcagcagcaagattagtttctggactaacttcattggcgtcacgggaacttcgttattttgaaactggataggaaccac-GAATC--AAATT--GTTACGAGACG---GT-AAAGTT--------TCCCAAGTTTTAATTAAATAGGAACAAATTACTAGT-ATATATTGTCCCTGTAGTGATAGATGAGTGGCATTCTATACCTTTGGAA
gi|18 : GTTTATTTTC-G--TA--TATA--------A-CATCGAT--AA-TTCTGT-GAAATT-C-AAAA-AGTAATATTTACA----GTCCAAATTT-TTC---ATTA----------GCA--TG-TTA-----------TAATGACCTT-T--GCT-ATCATT-G----T--GGT-TA----------GTTTTTAACAGATT--A-----------TT---TT-GTGT-TA-T-C-----TATTGTAACATcaatctgtatagtaatttaaaaagtgtttgcgagtgtcaaa
gi|2 : TATTGTTAGAAGAAGGACAAAATTAAAAAGGA-T-T-GTGTACAAAATTTATCA-TA-AT--A--------TGGTA-------------CC----A----G---AT--TATCTTCAAA-ATAT-TCTATTAAGTATATGGTCTCAT-GATTC--AAATTATGCCACCAGACAATCGC-AAAATTA-CAACATTCCCAAATGTAGATTAAACAT-------TTATAAGTCATCCTTTGTCCCATTAGCGATAGGTCAATGGAATTCAATACCCATGGAATGACGA-CAATCAACTTCTCT------------AAAATATTTTACATTTACCAAAATC-ACAACCTCCTTCTTATTTTTTACACGGAGAGCGCTT--CTGGAATGTGATACAT--ACA------AGATTAAGGCATACTTGTGTACTAAATAAA-GACTTATTCAGAT----G-GAACATTATTGATAGTCCT-CTGTGTTCTTGTGGTAAAACAGAGGACGCTTATCATTATTTTTTCTCCTGC-ACTAAGTACTCTGCTCACAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATGACTATTGATATT--A---C------------------T--------------G-AC--AATG---A--A---T-TT-TTTCCCCCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-TTGGTCGTTTTTGAGTTAATTTTC-G--TA--TATA-GAATAACA-TATCGAT--AACT-CTGT-GAAATT-C-AAAA-AGTA-TATTTACAGTCCG----AATTT-TTC---ATAA----------GTA--TG-TTA-----------AAATGACCTT-T--GAT-ATCATT-G----G--GAT-TA----------GTTTTATATTCAGATTA-----------TT---TT-GTGT-CA-T-A-----TATTGTAAC
gi|20 : TAAAAAT-A-T-T-AAGCA-------TATCA-TACATTCA--------TTATT-------------CTTCCAA----G---AT--TATCTTCAAATATATCTCT-CCAAGTATACGGTCACATAGAATCCAAAATTATGCCACCAGACAATCGC-AAAATTACCAGCAT
gi|21 : GTTTTTTTTC-G--TA--TATA-GAACAACA-TATCGAT--AACT-CTGT-GAA------------------TTTACA----GTCCGAATTT-TTC---ACAA----------GTA--TG-TTA-----------AAATGACCTT-T--GAT-ATCATT-G----T--GGT-TA----------T---------------A-----------GT---TT-----------------TATTGTAACctgg
gi|22 : aaagtACACT--CCAAAA-C-ACAACCT------TATTTTTCGCATGGAGGGCACTATACCGTAATGTGATACAT--ACATGTACTAGACTAAGGCATAATTGTGTATTAGATAAA-GACTTATTCAGA
gi|23 : ATATTATTCGT--ACT------AAACCAAGGTGTAACTGTTTACTAAACTAA-GATTTACATAAGC----G-TAACATAATCGACAGTCCT-TT-T-TTCTTGTGGACAAAGTGAAGATGTGTATCt
gi|24 : ct--AA-T-CTGT-GAAATTAC-A-----GT--------CC----G----AATTT-TTC---ACAA----------ATA--TG-TTA-----------AAATGACCTT-T--GAT-ATAATT-GCACAT--TGT-TA----------G---------------T-----------TT---TTAGCATATA-T-C-----TATTGTAAC
gi|25 : caata--------AGAT-CTGGTCGTTTTT-AGTTCAATTCC-T--TA--
gi|26 : gTT-C-AAAA-AGTA-TATTTACA----G----AATTT-TTC---ATAC----------GTT--TG-TTA-----------GAATAACCTT-T--GAA-ATCAAT-G----T--AGT-TA----------G---------------A-----------TT---CT-GTGT-CA-T-C-----TATTGTAACATattttttatgtattataattatccaatatatgcattttatttgtactcattatgcaatatatattt
gi|27 : ----G----AATTT-TTT---ATTA----------GTA--TT-TTA-----------AAATGAGCTT-T--GGT-ATCAAT-G----T--GGT-TAATTTTTAACGG---------------A-----------TTATCTT-GCGT-CA-T-C-----TATTGTAACATg
gi|28 : tccGATACATGTACA------AGATTAAGGCATAATTGTGTACTAAATAAA-GACTTGTTCAGAT----G-TAACATTATTGA
gi|3 : acagtggacagacagagagaTTATTGTTAGAAGAAGGACAAAATTAAAACA-A-T-T-ATGTACAAAATTTATCA-TA-AT--A--------TGGTA-------------CC----A----G---AT--TATCTTCAAA-ATAT-TCTTCCAAGTATACGGTCACAA-GAATC--AAATTATGCCACAAGACAATCCC-AAAATTA-CAGCATTTCCAAATGTATATTAAACAT-------TTATAAGTCATCCTTTGTCCCAGTAGCGATAGGCCAATGGAATTCAGTACCCATAGAACTAAGA-CAATCAACTTCTCTGAAA-ACTTTCAAAAACAATTTACATTTACCAAAATC-ACAACCTCCTTCTTAATTTTCGCATACAGAGCGCTA--CTGGAATGTGATACAT--ACA------AGATTAAGGCATAATTGTGTACTAAATAAA-GACTTATTCAGAT----G-TAACATTATTGAAAGTCCT-CTTTGTTCTTGTGGTAAAACAGAGGACGCTTATCATTACTTTTTCTCCTGC-ACTAAGTACTCTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------T--------------G-AC--AATG--AA--A---T-TT-TTTTCCCCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTTT-G--TA--TATA-GAATAGCA-TATCGAT--AA---CTGT-AAAATT-C-AAGA-AGTA-TATTTACA----G----AAATG-TTC---ATAA----------GTA--TG-TTA-----------AAATTACCTT-T--GAT-ATCATT-G----T--AGT-TA----------G---------------A-----------TT---TT-GTAT-CA-T-C-----TATTGTAACAT
gi|30 : A----------ATA--TG-TTA-----------AAATGATCTT-T--CATCGTCATT-G----T--GGT-TA----------G---------------ACTTAA------TT---TT-GTGC-CA-T-C-----TATTGTAACA
gi|32 : ttcttatgtac-----------AAATGATCTA-T--GAT-ATCATT-G----T--GGT-TA----------G---------------AATAAATAAAACTT---TT-GTGT-CA-T-T-----AATTGTAAC
gi|4 : tcat-A-T-TGATGTATTAAATTTACCA-CA-A-----------------------------------------G---AC--AATCTCAAAA-GCAT-ATTACCAAATATACGCTCAGAC-GAATC--AAATTATGTGACTAGGCAGTC-----------------TC---AGTGTCGATTACATAC-------GTACACATCATCCTTTGTCCCAGTAGCGATAGACAAATGGAATTCTTTACCTTTGGAAATAAGA-CAATCTACCACTTTAGGTTCCTTT--AAAACTGTTTGCAAATGTCAAAAACTAC-GCCTCCCCCATATTTTTCTCGTGGAGAACGCTA--CTGGAACATAATATAC--ACT------AGACTGAGA-ATAATTG------------------------GAC----G-CAATAGCATTGATAGGCCT-TTGTGCACTGGTCGTAAAACAGAAG-------------TTTTTTCTCTTGT-ATAGAATATTCCGGTCCCAGAAATGATTTATTTAA-----TGCCATCTTTAGAATA-GAAAATTTACACATAGTTGATACTCGTGTACAACTCCTTTAG-TATTAGA-------GAAA--------------------------------------------------------AC--AAAA--AATTA---T-TTATTTTTTTTTATAAATGCT-GTA-CA-ATTAGTTT--TAAAG--------AGAT-ATTGCTGTTTTT-AGTTTAATTCC-G--Tg
gi|5 : TATAATGCAC--ACT------AGACTGAGGCATGGTTGTATTTTAAACAAA-GATTTATTTAGAT----GGTAATAT-ATTGATAGTCCTGCTGTG---CTGTGG-AAAATTGAAGACGCATACCACTTC-TTTTCTCTTGT-GTGAAATATT----TCCCAGAAATGATTTGTTTAA-----TGC-ATATTTAAAATA-GAAAATTTACAC-TAGTTGATAC-CGTGTT--------TTACTTT-TGGG-------GAGAAA--------------AATCC------------------TTTA-----------GTATTAAACG--AA--A---T-TTATTTT---CTA-------TAGTA-CA-ATT-ATTT-CTAAAG--------AGAT-CTGGTCGTTTTT-AGTTCAATTCC-ttg
gi|6 : ACTTTTTCTCC-GC-AC--GGTACTCTGCTCCCAGAAATGATTTATTTAAATAAATGCTATTTTTAGGATGTGATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------TCTATTAATATTACTG-AC--AATGA-AA--A---A-TT-GTTTCCTATA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCG-TTTTAAGTTTATTTTT-G--TA--TATA-GAATAGCA-TATCGAT--AA---CTGT-AAAATT-CAAAGA-AGTA-TATTTACA----G----AAATG-TTC---ATAA----------GTA--TG-TCA-----------AAATGACCTT-T--GAT-ATCATT-G----T--AGT-TA----------G---------------A-----------TT---TT-GTGT-CA-T-C-----TATTGTAACATtttaatttttatgtattatagattatccaatatatgcattgttatttgtactcattatgcaatatatatt
gi|7 : ACTTTTTCTCCTGC-AC--GGTACTCTGCTCCCAGAAATGATTTATTTAAATAAATGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------TCTATTAATATTACTG-AC--AATG--AA--AAA-TGTT-TTTTCCTATA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTTT-G--TA--TATA-GAATAGCA-TATCGAT--AA---CTGT-AAAATT-C-AAGA-AGTA-TATTTACA----G----AA-AT-GTC---ATAA----------GTA--TG-TCA-----------AAATGA-CTT-T--GAT-ATCATT-G----T--AGT-TA----------G---------------A-----------TT---TT-GTGT-CA-TAC-----TATTGTA
gi|8 : GTGAAACAT--ACA------AGATTAAGGCATAATTGTGTACTAAATAAA-GACTTGTTCAGAT----G-TAATATTATTGATAGTCCT-CTGTGTTCTTGTGGTAAAACAGAGGACGCTTATCGTTACTTTTTCTCCTGC-ACTAAGTACTCTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTGTAGGATG-GATAATTTATACATAGTAGACACTCGTGTG--------TTAC-TA-TGGGGAGAATAGAGATG--------------A---CTCTATTAATTAGTATTATT--------------G-AC--AATGAAAA--A---T-TG-TTTT--CCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTca
gi|9 : catagtgcatacaattagaCTTGTTTTTCTGCCACTAGGAATTCTACTCC-AGAAATGATTTATTTAA-----TGCTA-TTTTAGAATG-GATAATTT-----------------GTCTG--------TTAC-TA-TAGC-------AAGATGACTCATTAGTATT-A---C------------------T--------------G-AC--AATG--AA--A---A-TT-TATCTTCCTG-------T-GTA-CA-ATT-GTTT-ATAAAA--------CGAT-AGGGTAGTTTTTCGGTTTATTTTT-G--TATCTGTA-CCATTGCA-TATCAAC--AATT-CTGT-GAATTT-C-AAGA-AGTA-TATTTTTAATCTG----AATCT-TTCATTATAATCTATGTAATATA--TT-TTA-----------AAATGACCTT-T--GAT-ATCATT-----------------------------------------A-----------TT---TT-GTGA-CA-T-CAATATTATTGTAACAT
blockSeqs : GG A . G . C ATGGTACTTTGGTATCTCCAAAGTATTCTACCAAGTAT GG TA C A TA CA C C T AC T GAACAAA A C A A AGGTTC CA C T T C T TA G GT ATGTACT T . C C G T G GCT C T C ATAAA T CAACTCCT T T GAGAATA ACTCTATTAATTAGTATTATT T TA AA TT ACAT A CCC TAAATGC A G C A C TGTATTTT T A T CT TC T T G TA TT T A A C AA GTCCA A ATT TCTATGTAAT AT A . G TT C . CACA AA A GTTTTATATTCAGATTA ATC A A G A AATAT
blockSeqs : C . . . . . TCATTATTCTTCCAAG . G . A T . T G . A T . G A T . AATTT CA A T . C T . G . A C . C T . T . GTG . T C ATAAA . . . . . ACTCTATTAATATTACT . . A . AATG A CCC . . . . . . T . A . C . . C . . CT . . . . A GTCCG . . . . . . . A . . . . . GTTTTTAACAGATTA . . . . . .
blockSeqs : T . . . . . ATGGTACCAG . A . T T . C C . A A . C A C . GAAAA . A A . C C . T . T T . T C . A . GCT . A C . . . . . . ACTCTATTAATATTACT . . . . T . TTT . . . . . . . . G . . . . T . . CT . . . . A GTCCG . . . . . . . . . . . . . GTTTTTAACAGATTA . . . . . .
blockSeqs : A . . . . . ATGGTACCAG . A . A A . C C . A A . C G A . . . G . . . . . G . A C . C T . T . GCA . G C . . . . . . ACTCATTAGTATTACT . . . . T . CCT . . . . . . . . A . . . . T . . TT . . . . A ATCTG . . . . . . . . . . . . . GAATAAATAAAAC . . . . . .
blockSeqs : . . . . . . G . G . . C . C A . . C . A T . . . . . . G . A C . C T . T . GCT . T C . . . . . . ACTATTGATATTACT . . . . T . CCT . . . . . . . . A . . . . T . . T . . . . A ACCC . . . . . . . . . . . . . ATTTTTAACGGA . . . . . .
blockSeqs : . . . . G T . . . T C . T C . C . . . T C . . . . . . AATCCTTTA . . . . T . TTC . . . . . . . . A . . . . T . . T . . . . A GA . . . . . . . . . . . . . GACTTAA . . . . . .
blockSeqs : . T T . C T . T . . . . C . . . . . . ACT . . . . A . CC . . . . . . . . C . . . . . . . . . . . . A G . . . . . . . . . . . . . GAC . . . . . .
blockSeqs : . A C . . T . . . . . . . . . . . ACT . . . . T . C . . . . . . . . . . . . . . . . . . . . . A G . . . . . . . . . . . . . TA . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . GT . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . GA . . . . . .
blockSeqs : . . . . . . . . G . . . . . . . . . . . . . GA . . . . . .
blockSeqs : . G . . . . . . . . . . . . . GA . . . . . .
blockSeqs : . . . . . . . . . . . GA . . . . . .
blockSeqs : . . . . . . . . A . . . . . .
blockSeqCons : ATGGTACCAG********************************** G* GG**** ** T**** GCT ** CCC T** ***********
originalCons : TTATTGTTAGAAGAAGGACAAAATTAAAAAN-A-T-T-ATGTACAAAATTTATCA-TA-AT--A--------TGGTA-------------CT----A----G---AT--TATCTTCAAA-ATAT-TCTACCAAGTATACGGTCACAN-GAATC--AAATTATGCCACCAGACAATCGC-AAAATTA-CAGCATTCCCAAATGTNGATTAAACAT-------TTATAAGTCATCCTTTGTCCCAGTAGCGATAGGCNAATGGAATTCANTACCCATGGAANTAAGA-CAATCAACTTCTCTGAATTNCTTTCAAAAACAATTTACATTTACCAAAATC-ACAACCTCCTTCTTATTTTTCGCATGGAGAGCGCTA--CTGGAATGTGATACAT--ACA------AGACTAAGGCATAATTGTGTACTAAATAAA-GACTTATTCAGAC----G-TAACATTATTGATAGTCCT-CTGTGTTCTTGTGGTAAAACAGAGGACGCTTATCATTACTTTTTCTCCTGC-ACTAAGTACTCTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------T--------------G-AC--AATG--AA--A---T-TT-TTTTCCCCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTTC-G--TA--TATA-GAATAGCA-TATCGAT--AA-T-CTGT-GAAATT-C-AAGA-AGTA-TATTTACA----G----AATTT-TTC---ATAA----------GTA--TG-TTA-----------AAATGACCTT-T--GAT-ATCATT-G----T--GGT-TA----------G---------------A-----------TT---TT-GTGT-CA-T-C-----TATTGTAACAT
finalCons : TTATTGTTAGAAGAAGGACAAAATTAAAAAN-A-T-T-ATGTACAAAATTTATCA-TA-ATATGGTACCAG----------------------------------AT--TATCTTCAAAG-TAT-TCTACCAAGTATACGGTCACAN-GAATC--AAATTATGCCACCAGACAATCGC-AAAATTA-CAGCATTCCCAAATGTNGATTAAACAT-------TTATAAGTCATCCTTTGTCCCAGTAGCGATAGGCNAATGGAATTCANTACCCATGGAANTAAGA-CAATCAACTTCTCTGG----CTTT--AAAACAATTTACATTTACCAAAATC-ACAACCTCCTTCTTATTTTTCGCATGGAGAGCGCTA--CTGGAATGTGATACAT--ACA------AGACTAAGGCATAATTGTGTACTAAATAAA-GACTTATTCAGAT----G-TAACATTATTGATAGTCCT-CTGTGTTCTTGTGGTAAAACAGAGGACGCTTATCATTACTTTTTCTCCTGC-ACTAAGTACTCTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------T--------------G-AC--AATG--AA--A---T-TT-TTTTCCCCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTTC-G--TA--TATA-GAATAGCA-TATCGAT--AAT--CTGT-GAAATT-C-AAGA-AGTA-TATTTACA----G----AATTT-TTC---ATAA----------GTA--TG-TTA-----------AAATGACCTT-T--GAT-ATCATT-G----T--GGT-TA----------G---------------A-----------TT---TT-GTGT-CA-T-C-----TATTGTAACAT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTTATTTAAATCAGTTACAGTTCAAGTCAGTTCTAAAACTTTAACTTTTATTATACTACCATGTACTTCAATAGACACTCGCGGGAATATGCTCAGAATGCAAGGTGGATGTCACAATCAAGATCCGAAAAACTTGAAAAATGACAACTTGCAGCGCAAGATTAGTCACTGGTGACTTATTGACGTCACCGGAATCTCTGTATTTCGAAACTGGGTGGACCACTTATTGAAACATTAGGGATGAATGGACAAAATTAGAGAATAACTATACACTGCAATAAAATATATCATTATATGGA
Unaligned ( gi|14 ): CAAGAAGAATTTAAGGTCAATTGCAAAACTTTATCACTTTTATACGCTACTTTTATAAGGCCGTTGCTAGAATATGCATCTGAGGTATGGGGTGGGTGTTCAAATCAAGATTCAGAAAAACTAGAAAAATTACAGTTAGCAGCCGCGAGGATAGTCACAGGTATTACCTACTTGGCATCGTGAGACTCTTTCTATTTCGAAACTGGGTGGGAACCGCT
Unaligned ( gi|19 ): GTTAAAAATTACAGTTTAAGGTCCTGAAACTTTATCACTTTTATACAGTACTTTTAAAAGTCTTCCTTTAATGTTGGAATATGCATCTGAAGTATGGGATGGGTGTTCAATCATTTCAAATTTAAAAAAAAAAAAAA
Unaligned ( gi|29 ): GATACTTTGTTATTTCGCAATTTTATACACTACTTTCATAAGACCTCATTTTGGAATATGCATCCGAAGTATGGATTGGG
Unaligned ( gi|31 ): ATATCAATATTATTATTCATACTAAACTAAGGTATTTAACTGTTTACTCAATGAAACTATGATTTACACAAG
Unaligned ( gi|33 ): AGCTGGTCAATATACATCGATTCGTTATATTAGCCAACGCGTATATAAAAAAAACCCTGG
Unaligned ( gi|34 ): TTATACTGAACTAAGGTATAACTGTTTACTCAACTGTAATTTACA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 7777777777777777777777777 111111 11 2222222 888888888888888 1 1111111 22222 11111111 1111111 3333333333333333333333333333333333333333333333333333 11 11111 111 1111111 11111111 222 222222222 1111111111 11111111111 66666666666666666666666666666666666666
lowQualScore : 0 0 99 5 5 5 6 6 0000000000000000000000000 6 999999 33 6 7 66 77 3 6 0 0 5 77 1 1111111 1 1 1 8 333333333333333 1 1 6 2 1 99 2 55 2222222 0 2 4 0 3 8888 4 1 5 00 777 4 7 1 22222 4 0 66666666 4 4 4444444 5555555555555555555555555555555555555555555555555555 4 55 55 55 22222 8 111 1111111 3 3 3 3 3 55555555 3 7 3 77 55 4 9 4 55 777 3 3 3 3 44 555555555 0 3 555 2222222222 33 2 22222222222 2 66 2 2 5555 33 2 55555555555555555555555555555555555555 444 2 2 2 2 66666
lowQualScore : . . .. . . . . . ......................... . ...... .. . . .. .. . . . . . .. . ....... . . . . ............... . . . . . .. . .. ....... . . . . . .... . . . .. ... . . . ..... . . ........ . . ....... .................................................... . .. .. .. ..... . ... ....... . . . . . ........ . . . .. .. . . . .. ... . . . . .. ......... . . ... .......... .. . ........... . .. . . .... .. . ...................................... ... . . . . .....
lowQualScore : 8 8 00 7 7 7 7 7 8888888888888888888888888 7 222222 00 7 8 77 99 0 6 1 7 7 11 0 7777777 0 0 0 0 666666666666666 5 7 7 5 5 22 5 55 7777777 5 3 0 7 2 5555 4 0 0 55 111 4 4 1 22222 4 1 11111111 4 4 4444444 8888888888888888888888888888888888888888888888888888 0 55 00 55 77777 0 222 8888888 6 6 6 6 6 44444444 3 9 1 99 00 0 6 0 00 888 6 3 3 3 55 888888888 8 1 444 5555555555 99 9 77777777777 7 33 7 7 7777 77 7 77777777777777777777777777777777777777 777 7 7 7 7 77777
consensus : TTATTGTTAGAAGAAGGACAAAATTAAAAAN-A-T-T-ATGTACAAAATTTAT-CA-TAATATGG------------------------TACCA-GAT------TATCTTCAAA-ATAT-TCTACCAAGTATACGGTCACAN-GAATC--AAATTATGCCACCAGACAATCGC-AAAATTA-CAGCATTCCCAAATGTNGATTAAACAT-------TTATAAGTCATCCTTTGTCCCAGTAGCGATAGGCNAATGGAATTCANTACCCATGGAANT-AAGACAATCAACTTCTCTGAAA--CTTTCA---AAAACAATTTACATTTACCAAAATC-ACAACCTCCTTCTTATTTTTCGCATGGAGAGCGCTA--CTGGAATGTGATACAT--ACA------AGACTAAGGCATAATTGTGTACTAAATAAA-GACTTATTCAGAT----G-TAACATTATTGATAGTCCT-CTGTGTTCTTGTGGTAAAACAGAGGACGCTTATCATTACTTTTTCTCCTGC-ACTAAGTACTCTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------T--------------G-AC--AATG--AA--A---T-TT-TTTTCCCCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTTC-G--TA--TATA-GAATAGCA-TATCGAT--AA-T-CTGT-GAAATT-C-AAGA-AGTA-TATTTACA----G----AATTT-TTC---ATAA----------GTA--TG-TTA-----------AAATGACCTT-T--GAT-ATCATT-G----T--GGT-TA----------G---------------A-----------TT---TT-GTGT-CA-T-C-----TATTGTAACAT
Reference ( family-3299 ) : TTATTGTTAGAAGAAGGACAAAATTAAAAAN-A-T-T-ATGTACAAAATTTAT-CA-TAATATGG------------------------TACCA-GAT------TATCTTCAAA-GTAT-TCTACCAAGTATACGGTCACAN-GAATC--AAATTATGCCACCAGACAATCGC-AAAATTA-CAGCATTCCCAAATGTNGATTAAACAT-------TTATAAGTCATCCTTTGTCCCAGTAGCGATAGGCNAATGGAATTCANTACCCATGGAANT-AAGACAATCAACTTCTCTGG----CTTT-----AAAACAATTTACATTTACCAAAATC-ACAACCTCCTTCTTATTTTTCGCATGGAGAGCGCTA--CTGGAATGTGATACAT--ACA------AGACTAAGGCATAATTGTGTACTAAATAAA-GACTTATTCAGAT----G-TAACATTATTGATAGTCCT-CTGTGTTCTTGTGGTAAAACAGAGGACGCTTATCATTACTTTTTCTCCTGC-ACTAAGTACTCTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------T--------------G-AC--AATG--AA--A---T-TT-TTTTCCCCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTTC-G--TA--TATA-GAATAGCA-TATCGAT--AA-T-CTGT-GAAATT-C-AAGA-AGTA-TATTTACA----G----AATTT-TTC---ATAA----------GTA--TG-TTA-----------AAATGACCTT-T--GAT-ATCATT-G----T--GGT-TA----------G---------------A-----------TT---TT-GTGT-CA-T-C-----TATTGTAACAT
gi|1 : TTATTGT-ATAAGAAG--CAAAATTAAAAAC-A-TAT-ATGTACAAAATTT---CAATAATATG-------------------------TACTA-GAT------TATCTTCAAA--TAT-TCTTCCAAGTATATGGTCACAA-GAATC--AAATTATGC-AC-AGACAATCGC-AAAATTA-CAGCATTCCCAAATGTAGATTAAACAT-------TTATAAGTCATCCTTTGTCCCAGCA-CGA-AGGCCAATGGAACTCAGTACCCATAGAACT-AAGACAATCAACTTCTCTGAAA--CTTTCA---AAAACAATTTACATTTACCTAAATC-ACAACCTCCTTCTTCTTTTTCGCATGGAGAGCGCTA--CTG-AATGTGATACAC--ACA------AGATTAAG-CATAATTGTGTA-TAAATAAAAGACT-ATT-AGATCTATG-TAACATTATTGATAGTCCT-ATGTGTTCTTGTGGTAAAACAGAGGAC-CTTATCATTACTTTTTCTCCTGC-ACTAAGTACT--GCTCCCAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GA-ATGACTCTATTAATATTA---C------------------T--------------G-AC--AATGAAAA--A---T-TG-TTTT--CCTA-------T-GTA-------------ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTT--G--TA--TATT-GAA-AGCA-TATCGAT--AA---CTGT-AAAATT-C-AAGA-AGTA-TATTTACA----G----AAATG-TTC---ATAA----------TTA--TG-TCATTAATTATGTTAAATGACCTT-T--GAT-ATCATTGG----T--AG--TA----------G---------------A------------T---TT-GTAT-CA-T-C-----TATTGT-ACAT
gi|11 : ctggtcggcatacattggactgtcaaaattaccaaatgcttaataaaaaaaactgggattgcttaaaaaattacagtttaagggtcaattgcaaaactttatcacttttatactacttttataggccgtcgctagaatatgcatctgaggtagggggtgggtgttcaatcaagattcagaaaaactagaaaaattacagttagcagccgcgaggattatccacaggtcttacttccttggcatcgcgtgactctctcattttgaacgggtggaacgcgcTTACTGTTAAAAGAAGGGTAAGATTAAACAC-AAT-T-ATGTACAAAATTTAT-CA-TAATATGGTACTTTGGTATCTCCAAAGTATTCTACCA-AGTATATGGTATCTCCAAA-GTAT-TCTACCAAGTATACGGTCGCAT-GAATC--AAATTACGTCACCAGACAATCGCTAAAATAA-CAGCATTCCCAAACGg
gi|12 : aactagaaaaattgcagttggcagctacaatgttagtcacaggtcttactttcttgacatcacgagactctctctatttcgaaactgggtgggaactacAATGTTGATTAAACAT-------TTATAAATCACCCTTT-TCCAATTGGCGATAGATAAATGAAATTCACTACCTATGGAAATAAAAACAATCAACTTTTCTAA----TTTCCTTCAAAAACAATTCAATTTTCCCAAAA-C-ACAACC----CCTTATTTTTCGCATGGAAAACGCTA--CTGGAATG-----------------------TAGGACACAATTATGTATTAGATA--------------AC----G-TAACATTATTGATAATCCT-CTGTGTTCTTGCGGT-AAACAGAGGAC----ATCACTACTTT
gi|13 : --------------A---C------------------T--------------G-AC--AATG--AA--AACAT-TG-TTTTCC--TA-------T-GTAGCACATT-GTTT-ATAAAAT-------AGATTCTGGTCGTTCTTAAGTTTATTTTCTGCTCA--CACATGAA-AGCAGTATCGAT--AA---CTGT-AGAAAT-A-AAGACAGT--TATTTACA----GA---AATGT-TCC---ATAA----------TTGATTGATTA-----------AAATGACTTTGTA-GAT-AGTATA-G----TAAGCTATA----------G---------------AC----------TT---TT-GTAT-CA-T-C-----TATTGTA
gi|15 : actcgtattaatatA-------T-G-A-CA-ATG-ATTTCATAAAATGTATTTTAGAA-CTAGTAAGCTTTAAGTTTATTTTC-GC-TA--TATA-AAA---CA-TATCGATTAAG-T-CTGTTGAAATT-C-AAAA-AGTA-T--TTACA----ACCC-AATTGATTC---ACA-----------GTA--TG-TTA-----------AACTGACCTT-TTTGAT-ATCATG-A----T--GGT-TA----------GTTTTTAACAGATT--A-----------TT---TT-GTGT-CAGT-C-----TATca
gi|16 : TTCTTGTTAGAGGAATGACAAA----------A-T-T-ATGTACAAAATTTgaaca
gi|17 : atctgcctctgaagtagtggttttgggtgttcaaatcaagattctgaaaaaaattacagcttgcagcagcaagattagtttctggactaacttcattggcgtcacgggaacttcgttattttgaaactggataggaaccac-GAATC--AAATT--GTTACGAGACG---GT-AAAGTT--------TCCCAAGTTTTAATTAAATAGGAACAAATTACTAGT-ATATATTGTCCCTGTAGTGATAGATGAGTGGCATTCTATACCTTTGGAA
gi|18 : GTTTATTTTC-G--TA--TATA--------A-CATCGAT--AA-TTCTGT-GAAATT-C-AAAA-AGTAATATTTACA----GTCCAAATTT-TTC---ATTA----------GCA--TG-TTA-----------TAATGACCTT-T--GCT-ATCATT-G----T--GGT-TA----------GTTTTTAACAGATT--A-----------TT---TT-GTGT-TA-T-C-----TATTGTAACATcaatctgtatagtaatttaaaaagtgtttgcgagtgtcaaa
gi|2 : TATTGTTAGAAGAAGGACAAAATTAAAAAGGA-T-T-GTGTACAAAATTTAT-CA-TAATATGG------------------------TACCA-GAT------TATCTTCAAA-ATAT-TCTATTAAGTATATGGTCTCAT-GATTC--AAATTATGCCACCAGACAATCGC-AAAATTA-CAACATTCCCAAATGTAGATTAAACAT-------TTATAAGTCATCCTTTGTCCCATTAGCGATAGGTCAATGGAATTCAATACCCATGGAATG-ACGACAATCAACTTCTCT---------------AAAATATTTTACATTTACCAAAATC-ACAACCTCCTTCTTATTTTTTACACGGAGAGCGCTT--CTGGAATGTGATACAT--ACA------AGATTAAGGCATACTTGTGTACTAAATAAA-GACTTATTCAGAT----G-GAACATTATTGATAGTCCT-CTGTGTTCTTGTGGTAAAACAGAGGACGCTTATCATTATTTTTTCTCCTGC-ACTAAGTACTCTGCTCACAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATGACTATTGATATT--A---C------------------T--------------G-AC--AATG---A--A---T-TT-TTTCCCCCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-TTGGTCGTTTTTGAGTTAATTTTC-G--TA--TATA-GAATAACA-TATCGAT--AACT-CTGT-GAAATT-C-AAAA-AGTA-TATTTACAGTCCG----AATTT-TTC---ATAA----------GTA--TG-TTA-----------AAATGACCTT-T--GAT-ATCATT-G----G--GAT-TA----------GTTTTATATTCAGATTA-----------TT---TT-GTGT-CA-T-A-----TATTGTAAC
gi|20 : TAAAAAT-A-T-T-AAGCATATCATACATTCA-T--TATTC------------------------TTCCAAGAT------TATCTTCAAATATATCTCT-CCAAGTATACGGTCACATAGAATCCAAAATTATGCCACCAGACAATCGC-AAAATTACCAGCAT
gi|21 : GTTTTTTTTC-G--TA--TATA-GAACAACA-TATCGAT--AACT-CTGT-GAA------------------TTTACA----GTCCGAATTT-TTC---ACAA----------GTA--TG-TTA-----------AAATGACCTT-T--GAT-ATCATT-G----T--GGT-TA----------T---------------A-----------GT---TT-----------------TATTGTAACctgg
gi|22 : aaagtACACT--CCAAAA-C-ACAACCT------TATTTTTCGCATGGAGGGCACTATACCGTAATGTGATACAT--ACATGTACTAGACTAAGGCATAATTGTGTATTAGATAAA-GACTTATTCAGAT----
gi|23 : ATATTATTCGT--ACT------AAACCAAGGTGTAACTGTTTACTAAACTAA-GATTTACATAAGC----G-TAACATAATCGACAGTCCT-TT-T-TTCTTGTGGACAAAGTGAAGATGTGTATC
gi|24 : ct--AA-T-CTGT-GAAATTAC-A-----GT--------CC----G----AATTT-TTC---ACAA----------ATA--TG-TTA-----------AAATGACCTT-T--GAT-ATAATT-GCACAT--TGT-TA----------G---------------T-----------TT---TTAGCATATA-T-C-----TATTGTAAC
gi|25 : caata--------AGAT-CTGGTCGTTTTT-AGTTCAATTCC-T--TA--
gi|26 : gTT-C-AAAA-AGTA-TATTTACA----G----AATTT-TTC---ATAC----------GTT--TG-TTA-----------GAATAACCTT-T--GAA-ATCAAT-G----T--AGT-TA----------G---------------A-----------TT---CT-GTGT-CA-T-C-----TATTGTAACATattttttatgtattataattatccaatatatgcattttatttgtactcattatgcaatatatattt
gi|27 : ----G----AATTT-TTT---ATTA----------GTA--TT-TTA-----------AAATGAGCTT-T--GGT-ATCAAT-G----T--GGT-TAATTTTTAACGG---------------A-----------TTATCTT-GCGT-CA-T-C-----TATTGTAACATg
gi|28 : tccGATACATGTACA------AGATTAAGGCATAATTGTGTACTAAATAAA-GACTTGTTCAGAT----G-TAACATTATTGA
gi|3 : acagtggacagacagagagaTTATTGTTAGAAGAAGGACAAAATTAAAACA-A-T-T-ATGTACAAAATTTAT-CA-TAATATGG------------------------TACCA-GAT------TATCTTCAAA-ATAT-TCTTCCAAGTATACGGTCACAA-GAATC--AAATTATGCCACAAGACAATCCC-AAAATTA-CAGCATTTCCAAATGTATATTAAACAT-------TTATAAGTCATCCTTTGTCCCAGTAGCGATAGGCCAATGGAATTCAGTACCCATAGAACT-AAGACAATCAACTTCTCTGAAAA-CTTTCA---AAAACAATTTACATTTACCAAAATC-ACAACCTCCTTCTTAATTTTCGCATACAGAGCGCTA--CTGGAATGTGATACAT--ACA------AGATTAAGGCATAATTGTGTACTAAATAAA-GACTTATTCAGAT----G-TAACATTATTGAAAGTCCT-CTTTGTTCTTGTGGTAAAACAGAGGACGCTTATCATTACTTTTTCTCCTGC-ACTAAGTACTCTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------T--------------G-AC--AATG--AA--A---T-TT-TTTTCCCCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTTT-G--TA--TATA-GAATAGCA-TATCGAT--AA---CTGT-AAAATT-C-AAGA-AGTA-TATTTACA----G----AAATG-TTC---ATAA----------GTA--TG-TTA-----------AAATTACCTT-T--GAT-ATCATT-G----T--AGT-TA----------G---------------A-----------TT---TT-GTAT-CA-T-C-----TATTGTAACAT
gi|30 : A----------ATA--TG-TTA-----------AAATGATCTT-T--CATCGTCATT-G----T--GGT-TA----------G---------------ACTTAA------TT---TT-GTGC-CA-T-C-----TATTGTAACA
gi|32 : ttcttatgtac-----------AAATGATCTA-T--GAT-ATCATT-G----T--GGT-TA----------G---------------AATAAATAAAACTT---TT-GTGT-CA-T-T-----AATTGTAAC
gi|4 : tcat-A-T-TGATGTATTAAATTTAC-CA-CAA-----------------------------------GAC------AATCTCAAAA-GCAT-ATTACCAAATATACGCTCAGAC-GAATC--AAATTATGTGACTAGGCAGTC-----------------TC---AGTGTCGATTACATAC-------GTACACATCATCCTTTGTCCCAGTAGCGATAGACAAATGGAATTCTTTACCTTTGGAAAT-AAGACAATCTACCACTTTAGGTTCCTTT-----AAAACTGTTTGCAAATGTCAAAAACTAC-GCCTCCCCCATATTTTTCTCGTGGAGAACGCTA--CTGGAACATAATATAC--ACT------AGACTGAGA-ATAATTG------------------------GAC----G-CAATAGCATTGATAGGCCT-TTGTGCACTGGTCGTAAAACAGAAG-------------TTTTTTCTCTTGT-ATAGAATATTCCGGTCCCAGAAATGATTTATTTAA-----TGCCATCTTTAGAATA-GAAAATTTACACATAGTTGATACTCGTGTACAACTCCTTTAG-TATTAGA-------GAAA--------------------------------------------------------AC--AAAA--AATTA---T-TTATTTTTTTTTATAAATGCT-GTA-CA-ATTAGTTT--TAAAG--------AGAT-ATTGCTGTTTTT-AGTTTAATTCC-G--Tg
gi|5 : TATAATGCAC--ACT------AGACTGAGGCATGGTTGTATTTTAAACAAA-GATTTATTTAGAT----GGTAATAT-ATTGATAGTCCTGCTGTG---CTGTGG-AAAATTGAAGACGCATACCACTTC-TTTTCTCTTGT-GTGAAATATT----TCCCAGAAATGATTTGTTTAA-----TGC-ATATTTAAAATA-GAAAATTTACAC-TAGTTGATAC-CGTGTT--------TTACTTT-TGGG-------GAGAAA--------------AATCC------------------TTTA-----------GTATTAAACG--AA--A---T-TTATTTT---CTA-------TAGTA-CA-ATT-ATTT-CTAAAG--------AGAT-CTGGTCGTTTTT-AGTTCAATTCC-ttg
gi|6 : ACTTTTTCTCC-GC-AC--GGTACTCTGCTCCCAGAAATGATTTATTTAAATAAATGCTATTTTTAGGATGTGATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------TCTATTAATATTACTG-AC--AATGA-AA--A---A-TT-GTTTCCTATA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCG-TTTTAAGTTTATTTTT-G--TA--TATA-GAATAGCA-TATCGAT--AA---CTGT-AAAATT-CAAAGA-AGTA-TATTTACA----G----AAATG-TTC---ATAA----------GTA--TG-TCA-----------AAATGACCTT-T--GAT-ATCATT-G----T--AGT-TA----------G---------------A-----------TT---TT-GTGT-CA-T-C-----TATTGTAACATtttaatttttatgtattatagattatccaatatatgcattgttatttgtactcattatgcaatatatatt
gi|7 : ACTTTTTCTCCTGC-AC--GGTACTCTGCTCCCAGAAATGATTTATTTAAATAAATGCTATTTTTAGGATG-GATAATTTATACATAGTGGACACTCGTGTG--------TTAC-TA-TGGG-------GAGATG--------------A---C------------------TCTATTAATATTACTG-AC--AATG--AA--AAA-TGTT-TTTTCCTATA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTTTTTAAGTTTATTTTT-G--TA--TATA-GAATAGCA-TATCGAT--AA---CTGT-AAAATT-C-AAGA-AGTA-TATTTACA----G----AA-AT-GTC---ATAA----------GTA--TG-TCA-----------AAATGA-CTT-T--GAT-ATCATT-G----T--AGT-TA----------G---------------A-----------TT---TT-GTGT-CA-TAC-----TATTGTA
gi|8 : GTGAAACAT--ACA------AGATTAAGGCATAATTGTGTACTAAATAAA-GACTTGTTCAGAT----G-TAATATTATTGATAGTCCT-CTGTGTTCTTGTGGTAAAACAGAGGACGCTTATCGTTACTTTTTCTCCTGC-ACTAAGTACTCTGCTCCCAGAAATGATTTATTTAA-----TGCTATTTGTAGGATG-GATAATTTATACATAGTAGACACTCGTGTG--------TTAC-TA-TGGGGAGAATAGAGATG--------------A---CTCTATTAATTAGTATTATT--------------G-AC--AATGAAAA--A---T-TG-TTTT--CCTA-------T-GTA-CA-ATT-GTTT-ATAAAA--------AGAT-CTGGTCGTca
gi|9 : catagtgcatacaattagaCTTGTTTTTCTGCCACTAGGAATTCTACTCC-AGAAATGATTTATTTAA-----TGCTA-TTTTAGAATG-GATAATTT-----------------GTCTG--------TTAC-TA-TAGC-------AAGATGACTCATTAGTATT-A---C------------------T--------------G-AC--AATG--AA--A---A-TT-TATCTTCCTG-------T-GTA-CA-ATT-GTTT-ATAAAA--------CGAT-AGGGTAGTTTTTCGGTTTATTTTT-G--TATCTGTA-CCATTGCA-TATCAAC--AATT-CTGT-GAATTT-C-AAGA-AGTA-TATTTTTAATCTG----AATCT-TTCATTATAATCTATGTAATATA--TT-TTA-----------AAATGACCTT-T--GAT-ATCATT-----------------------------------------A-----------TT---TT-GTGA-CA-T-CAATATTATTGTAACAT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTTATTTAAATCAGTTACAGTTCAAGTCAGTTCTAAAACTTTAACTTTTATTATACTACCATGTACTTCAATAGACACTCGCGGGAATATGCTCAGAATGCAAGGTGGATGTCACAATCAAGATCCGAAAAACTTGAAAAATGACAACTTGCAGCGCAAGATTAGTCACTGGTGACTTATTGACGTCACCGGAATCTCTGTATTTCGAAACTGGGTGGACCACTTATTGAAACATTAGGGATGAATGGACAAAATTAGAGAATAACTATACACTGCAATAAAATATATCATTATATGGA
Unaligned ( gi|14 ): CAAGAAGAATTTAAGGTCAATTGCAAAACTTTATCACTTTTATACGCTACTTTTATAAGGCCGTTGCTAGAATATGCATCTGAGGTATGGGGTGGGTGTTCAAATCAAGATTCAGAAAAACTAGAAAAATTACAGTTAGCAGCCGCGAGGATAGTCACAGGTATTACCTACTTGGCATCGTGAGACTCTTTCTATTTCGAAACTGGGTGGGAACCGCT
Unaligned ( gi|19 ): GTTAAAAATTACAGTTTAAGGTCCTGAAACTTTATCACTTTTATACAGTACTTTTAAAAGTCTTCCTTTAATGTTGGAATATGCATCTGAAGTATGGGATGGGTGTTCAATCATTTCAAATTTAAAAAAAAAAAAAA
Unaligned ( gi|29 ): GATACTTTGTTATTTCGCAATTTTATACACTACTTTCATAAGACCTCATTTTGGAATATGCATCCGAAGTATGGATTGGG
Unaligned ( gi|31 ): ATATCAATATTATTATTCATACTAAACTAAGGTATTTAACTGTTTACTCAATGAAACTATGATTTACACAAG
Unaligned ( gi|33 ): AGCTGGTCAATATACATCGATTCGTTATATTAGCCAACGCGTATATAAAAAAAACCCTGG
Unaligned ( gi|34 ): TTATACTGAACTAAGGTATAACTGTTTACTCAACTGTAATTTACA