lowQualScore : 11111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111 222222222222222222222
lowQualScore : 4 1 4 2222 4 1 4 55 1 4 2 2222 2 1 999999999999999999999999999999999999999999999999999 222 11 3333333333333 1 22 1 1 1 2222222222222222 1111 22222222222 1 222222222 1 1 99999999999999999999999999999999999999999999 11111 444444444 2222222 1 1 22 111111 11 111 11111 1 11 55555555555555555555555555555555 1 111111111111 111 22222222 1 11 4444444 1 11 2 222222 555555555 11 22222222222222222222222222222222222222222222222222222 22222 11 11 1111 11 1 44444444444444444444444444444 222222 333333333 2222222222222222222 333333333 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2222 11 111 222222 11 222 55555555555555 11 33333 222 111 1 4444 22 0000000000000 1 666666666666666666666 11 11 1 555555555555 11 77777777777 6666666666666666666666666 1 1111 222222222 11 11 11 11 2222222 1111111111 11 11 999999999999999 111 3333 22 11 1 1 444444444 1 55555555555555555555555 2 222 11 1 22222 11 2 3333 333 222 33333 1 1 11111 4444 4
lowQualScore : 6 6 0 6 6 7 0 6 9999 0 5 0 55 4 5 0 0 5555 2 3 3 0 3 3 2 8 2 555555555555555555555555555555555555555555555555555 4 222 4 1 88 6666666666666 5 2 55 2 66 3 0 5 5 4 8888888888888888 2 777 1111 7 3 9 2 77777777777 4 0 888888888 0 5 1 1 5 33333333333333333333333333333333333333333333 1 11111 8 000000000 1111111 1 2 5 3 2 0 99 88 333333 1 5 999 33 3 111 33333 6 4 55 3 5 7 00000000000000000000000000000000 9 5 2 4 1 999999999999 444 00000000 0 33 7777777 0 4 33 0 2 0 3 0 777777 4 4 2 6 1 999999999 3 3 999 11 11111111111111111111111111111111111111111111111111111 66666 6 4 77 0 88 7 77 77 1111 11 0 66666666666666666666666666666 1 55 4 22 3 6 333333 333333333 111 7777777777777777777 333333333 3 1 0 5 3 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 3 2222 0 33 111 3 55 8 111111 3 55 00 2 555 2 22222222222222 3 44 11 33333 0 1 0 333 2 000 5 2 3 2 3 2 3333 11 4444444444444 6 6 6 5 777777777777777777777 6 6 6 555 6 22 2 3 22 6 3 6 99 4 3 55 2 0 333333333333 44 00000000000 1111111111111111111111111 6 9 0 4 2 0 9 6 2222 444444444 2 3 99 3 22 0 0 3 8 11 33 2 77 1 8888888 1 4444444444 5 22 5 33 2 0 0 888888888888888 111 8888 3 77 11 0 44 2 7 5 6 222222222 1 1 3 99999999999999999999999 77 1 6 111 7 66 5 77777 88 0 8888 6 555 111 00000 6 2 6 2 5 99999 2 999 2 2222 0
lowQualScore : . . . . . . . . .... . . . .. . . . . .... . . . . . . . . . ................................................... . ... . . .. ............. . . .. . .. . . . . . ................ . ... .... . . . . ........... . . ......... . . . . . ............................................ . ..... . ......... ....... . . . . . . .. .. ...... . . ... .. . ... ..... . . .. . . . ................................ . . . . . ............ ... ........ . .. ....... . . .. . . . . . ...... . . . . . ......... . . ... .. ..................................................... ..... . . .. . .. . .. .. .... .. . ............................. . .. . .. . . ...... ......... ... ................... ......... . . . . . ............................................................................................. . . .... . .. ... . .. . ...... . .. .. . ... . .............. . .. .. ..... . . . ... . ... . . . . . . .... .. ............. . . . . ..................... . . . ... . .. . . .. . . . .. . . .. . . ............ .. ........... ......................... . . . . . . . . .... ......... . . .. . .. . . . . .. .. . .. . ....... . .......... . .. . .. . . . ............... ... .... . .. .. . .. . . . . ......... . . . ....................... .. . . ... . .. . ..... .. . .... . ... ... ..... . . . . . ..... . ... . .... .
lowQualScore : 0 0 0 0 0 0 0 0 0000 0 0 0 00 0 5 0 0 0000 5 0 7 3 3 2 2 8 0 444444444444444444444444444444444444444444444444444 7 000 0 0 33 8888888888888 5 0 88 5 88 5 0 0 0 2 8888888888888888 5 555 5555 0 2 5 0 22222222222 0 5 555555555 0 0 4 4 0 88888888888888888888888888888888888888888888 2 00000 3 000000000 2222222 4 2 0 6 2 6 88 00 555555 7 7 777 88 4 555 55555 0 0 77 0 3 6 66666666666666666666666666666666 3 0 5 0 7 444444444444 000 88888888 0 88 2222222 5 0 00 2 5 8 2 0 000000 0 0 0 7 0 777777777 0 3 666 55 33333333333333333333333333333333333333333333333333333 77777 7 7 77 7 33 8 77 33 8888 22 6 44444444444444444444444444444 7 55 2 22 0 0 000000 333333333 777 1111111111111111111 222222222 7 7 3 7 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 8 4444 6 88 444 0 22 2 777777 2 88 88 5 888 5 88888888888888 2 22 22 55555 2 0 7 777 5 555 0 5 0 5 0 5 0000 00 0000000000000 0 0 0 0 000000000000000000000 0 0 0 000 0 00 5 0 00 0 0 0 00 0 0 00 5 5 555555555555 55 55555555555 7777777777777777777777777 0 0 0 0 5 2 0 0 7777 222222222 2 7 22 7 77 3 3 8 0 00 88 5 55 2 8888888 0 8888888888 2 22 5 88 5 7 7 777777777777777 000 7777 7 33 33 7 33 7 3 0 0 000000000 0 0 3 77777777777777777777777 77 0 7 333 0 00 0 00000 55 0 5555 0 000 000 00000 0 5 0 5 0 00000 5 000 5 5555 0
consensus : CAATGAAATTTAC-ACGAGTATAGGTTGTGAAGAGAGGCGAGGAGTAAAGTCTGGT-GGGCTTAACATACGTTCATTCT-GCAAAGTCATTCGATTTTATTCAATTGCCANTTTCTCCTTGTTTT-TTCGTTTCNAGNGTCGNTCCAGTNAGNGTT-TG-GTCAATAACCACTACTGT---------CAT--GT----CC-------TCC----T---ACG--------GGNTCGN--TGNTCCGT--TTGGTCCTN--ATGGC-GNATCGGTGGTTGTTGATCCTTCNACGNAGGTCNCCT-GTTTCACCTACGTATTGCTTTT-GG---CAAACCTTACAACTNATAAGGTAGATACAGTCGTCCGTGCGACAGG-ACGNNG-CT-CCCAANATTCTGTAGCTNCGN---CCTGTGACAGGACTGCTGAAANTGTCAGT---GGT-C-G--CTGTGTTTGCACA--TNAGGCATC--C-CA--TCGGAACATGTGTTGA---------AACC-C--CCGTTGGGTAATGGGTTGTCCAGTCTAGTTCTNACCACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCAT--TGGN-GGNTCTTT--GAAGACCCTAGCCATTCNTTNGTTGT--TGTGNAGAATGGGNAAATG--N---CTTT-TCAGGATG-GTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGT----GACTAAGNGGA---CT-CTATCG-CCT-TC--TTCTCTCTGTTTGTATTGNAGNAGGGANTTTCTGTC-TGTTC----TGGNCANCTCATCAACTGCTGNTTGCACT---TGGG-GGCTTNGTAGCCTCTCTTGCACAGGTGNTTTTTC-----GA--GA-GT-TGCT-TTGTTCT---T-ATAA----G---NA--A---CAGA--G--GAGCAG-ATACGACGNA-CTCGT-GTGGCTAAA-CC-TTTAGGTACTCCTTTGAAGGTATGAGGTGG-TGACAACTNGANGGCATGGNATATATAAATGTGAGTCAGCGGGTTTNGTATGGAGGCT------GAATTC---------GATTTCACCGTTC----AAG---ANNGTG---GAAGTG----GTA--TCCAAGAANACGTTCTTGGA-GCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---T---------GG-TA----AATAAAG---------TTTTCAAGNCTATCTCGGCCCTCCG-TCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAAGG--GATTGTCTGAGT-AAGTTGCGTTCNA--NTCTT-------CCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCACT-ACTTGTAAGTAATGTTCNCCNNNGAACGCGAAGTNGTTNAGTTNGANGACATNNCCTCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTG---GGGCCTTGTTATTCCAACCCTCTCTGCAGGCTTCAATGCCTTCCATCATAGGGGATGTNCGTGTAAAGTGAAGTCGCATCCNTGGTCACAAGGNGAGTATNGTCNGGCGGGNTNNAANANGGGTTTTTGTTACNNGTAGCCAGNNGTGTTCTTCAGGTATGACGGTA----GCTTCACAGCGTGCGG----NCGGAGATGTAGGTCAATGAATT-CNGANATTTTCTCCGTGGGGTGTCCGATGGCACNNAC-ATGGGACGNCCAGGCACGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GGTCTA--CAGTCGAG--AGGNAGCAGTGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTTTCGGTGATGGTGGCAGAAAACGTT--TTNGTAGGGTCGGAATCCAG-TT------CTAGTGTAAAACCGTTCATCCGAGAGT--TGTCTGTGCGCTTCNNCCATATAC-GTTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGCC---TTTTTTTACGACAATGTCGTC-CCG---TN-TTTT---AGC-NT--T-AAGGNCGGCTCTCTCTTCTTTGCTGAGATTGTCC-GGAACNTTNNTGTNTCGTCGAGACAGGATATCTTCGATGTCAGACTGCTCAACTGCNTGGATGTAGGACTCNAGGGCCGCACATTTTNCNGGTGGAGGTTCCNANNNGCTCTTAGNCCTACAGGTAG-AGTTT
Reference ( gi|1 ) : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCAAGGTGTAAAGTCTGGTGGGGCTTAGCTCAAGTTCATTCTAGCAAATTCATT-GATTTTATT--ATTGCCAATTTCTCTTTGTTTTATTC-TTTCA-GAGTCACTCCAGTTAGGGTTGTG-GTCAATAACTACGACCGT---------CAT--GT----CC-------TCT----T---ACG--------GGTTCGG--TGATTCGT--TTGGTCTTT--ATAAT-ATACCGGTGTTTGTTGACTCTTCTTCGGAGGTCACCT-GTTTCACATACCTACTGCTTTT-GG---CATTTCTTACAACTGATAAGGTAGGTGCAGTTGTCAGTGCGGCAGG-ACGAAG-CT-CCCAAAATTTAGTAGCTCTGT---CCTGTCACCGGACTGCTGAAAGTGTCAGT--TGGCCC-G--CTGAATTTGCACA--TGAGGCATC-ACTTA--TCAGAACACGTGATGA---------AACC-C--CAGTTGGGTAATGGGTTATACAGCCTAGTTCTAACTACAATGTCCTTTATATTTCAAGGT-TG--TCTGAAGGCCG-CCAT--TGGA-GGGTCTTT--AAAGATCCTAGCCATTCGTTTGTTGT--TATGCAGAATGGGCAAATG--G---CTTT-TAAAGATG-GTATTGAGGTTCTTCAGGGCGTGATGAAATGTAGT----AACTAAATGGA---CT-CTATTG-CCT-TC--TTCTCTCCGGTTATATAGAAGCAGAGAGTTTCTGTC-TGTTC----TGGACAACTCGTCAATTGCTGCTTGTACT---CGAACAGCTTTATAGCCTCTTTTACATAGGTGGCTTTTC-----AA--GA-GTCTGCT-TTGTTTT---T-CTAATTCCG---AA--C---CAGA--G--GAACAG-ATACGACGAA-CTCGT-GTAGCTAAA-AC-CTTAGGTACTCCTTTGAAGGTATGAGATGGGTGACAGCTTGAAGGCAT--CATGTATAAATGTGAGTCAGCGGGCTTTGTGTGGAGGTT------GAATTC---------AATTTTATCATTC----AAG---AGAGTG---GAAGTG----ATA--TCCAAGAATATGTTCTTGGA-GCTGGAAATTTC---------CA---------T-----------TG--GAA---TGGTGAAATGAGT---T---------GG---------TAAAG---------TTTTCAAGCCTATCTCGGCCCTCCT-TCCATTTCATTTCAATGTCATCAATGAAACACAACCAACTATGGGGTTTAAAGGGCGATTGTCTGAGT-AAGTTGTGTTCCA--ATCTT-------CCCATGAAAATGTTGGGATACGAATGAGCCATTTTCGTTCCCATAGCTGTGCCACTAACTTGTAAGTAATGTTCGCCGTTGAACACGAAGTTATTGAGTTTGAGGACATAA--TCAAGGAGCTTGACCAATTATTCTGTGGAAGGA---TGTGTCAGAACCCTGCTATCCCAAACCTC----------------CCTT-CATCGTGGGAGATGTTTGTGTGAAGCAAAGTCATATCCATGGTTGCGAGAAGGATATTATCAGGTAGGTTGGAAGAGAGGGTTTTGTTA-AGGTAATCAGTGGTGTCCTTCAAGGATGATGGTA----GTTT---AACATGTAG----GCGGAGGTGTAGGTCAATAAATT-CTGAGATTTTCTCCTTGGGGTATCCAATTGCACTCACTATAGGGCGGCCAGGCATACCTTCTTT--GTGGATTTTAGGCGGTAAATAAAATTGTCCA-GGTCTA--CAGTTGAG--AGGCATCAATGTTTCAAAGACAT--TATTACCAATTTTCTCGTCTTTGTACATTTGCTCAAGAGTGTCGTTGATTGTGGCAGAAAACGTT--TTGGTGGGGTCGGAGTCCAGTTTAGCAGTTTAGTGTAAAACCGTTCATCCGGGACA--TGTCTGTGCGCTTCCGCTGTGTAT-ATTATCTTGTCTAATACCACCAATGTTGACCCTCTGTCTGCTTTTTTTTTTTATAACAATGTCATC-CCG--TTTGTTTT---AGCTCT--T-AAGGCTAAC-CTCTCTTATTTGCTTAACTTGTCCGGGAATATTTCTGTTTTGTTGAG-TAG--T-TTTTCAATGTC---CTGCTCAACTAATTCGATGTAGGGCTCGATGGCTGCACATGTTCCTATTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAGTAGTTT
gi|8 : CAATGAAATTTAC-ACGAGTATAGGTTGTGAAGAGAGGCGAGGAGTAAAGTCTGGT-GGGCTTAACATACGTTCATTCT-GCAAAGTCATTCGATTTTATTCAATTGCCATTTT
gi|9 : AACCTCTCCTTATTTT-TTC-TTTCC-ATATTGGTCCAGTGCACGTTTTG-GTCAATAGCCACTACTGT---------CAT--GTTTTCCCATTCATGTCC----T---GCG--------AGATCGAAATGCTCTGCAACTGATTCTT--TCAACCAT-TTGGTAGTTATTGATCCTCCTACGTAAGTCTCCT-GTTTCATCTACGTATTGTTGAT-CA---CAGAGCTTACAGTTTATGTTGGAAATGCAATTATCCGTGCGACAGG-CTGTTT-CC-CCCAGAATTCAGTAG---TGTCAACTTGTGACAGGACTCTTAAAACTGTTACTTCTAG--C-G--CTGTGTTTGCATA--TCGGGCATCTAC-CA--TCAGAACATGgaggccgaaatgactttaaatctgtgcatcagaattttctcttgttttttcgtttcaagagtcactccagttagggtttgcgtcaaaactacgactgtccttcttcccatttgtaaccctctaggttgaaatgttcccaacggttcggtgatccgtttggtcttaataagtgacggtgattgttgactcttctcggagtcacctgtttcacctacgtactgctttttggcatttcttacaaccgataaggtagatcagtgcagtacggcagggacatagctcccaaaattttgtagctctgttcctgtcaccgggctgctgaaagtgtcagt
gi|8 : cattctggtgaagtaattaggtttgttcatgtcattggggcggaatgacctcaacctatgcatccagTTTCTCTT-GTTTT-TTCGTTTCAAGAGTCACTCCAGTTAGGGTT-TGCGTCAA-AACTACGACTGTCCTTCTTCCCATTTGTAAC-CC-------TCTAGGTTGAAATGTTCCCAACGGTTCGG--TGATCCGT--TTGGTCTTA--ATAA--GTGACGGTGATTGTTGACTCTTCT-CGGAG-TCACCT-GTTTCACCTACGTACTGCTTTTTGG---CATTTCTTACAACCGATAAGGTAGAT-CAGT-G-CAGTACGGCAGGGACATAG-CT-CCCAAAATTTTGTAGCTCTGTT--CCTGTCACCGGGCTGCTGAAAGTGTCAGT--
gi|4 : caatgaaatttacacgagtataggttgtgaagagaggcgaggagtaaagtctggtgggcttaacatacgttcattctgcaaagtcattcgattttattcaattgccattttgaggccgaaatgactttaaatctgtgcatcagaatAGAATTATG-GTCAATTACCACTACTGT---------CAT--AT----CC-------TC
gi|30 : gTCAATAACCACCACCGT---------CAT--GT----CT-------TCC----C---ATG--------ccatctgtgaccattaagattgaggtgttccccgacgggctctttggttctttttgtcctaatggtggatcggtggttgtttattctttggcggatgtcacccgtttctccaacatattgctttgagcaaaccttacaattgagatacacacagttgtctgtgtgacaggacatgttacccaatattttgtagatgcgaccagtaacgggctagtaaatttgtcagtgctgtgcttacacaaaaggcatctggcatcggaacaagttttaaaaccaccattgggtaatgggttgtctaatttcgctctcactaccatgtccttttcctaggccgtctaaatgcagccattggtggatccttgaaaagatccgtcattcttttattattgtgaagaatatgtacatgtagattctctctcaggatgctgttaaagttcttaaggacggggtgaaatgttgtgacatgtggaaccctactattgtctttcttctcattgtattgaaaaagggtttccctgttctttgtggttatctcatcaattgcggattgcactgtgtgggctttgtagcctcgattacacagatg
gi|4 : T--GT----TC-------CCC----G---ACG--------GGCTCTT--TGGTTCTT--TTTGTCCTA--ATGGT-GGATCGGTGGTTGTTTATTCTTTGGCGGATGTCACCC-GTTTCTCCAACATATTGCTTTG-AG---CAAACCTTACAATTGA---GATACACACAGTTGTCTGTGTGACAGG-AC-ATG-TTACCCAATATTTTGTAGATGCGA---CCAGTAAC-GGGCTAGTAAATTTGTCAGT---------G--CTGTGCTTACACA--AAAGGCATC-TGGCA--TCGGAACAAGTTTTAA---------AACCAC--CA-TTGGGTAATGGGTTGTCTAATTTCGCTCTCACTACCATGTCCTTT----TCCTAGGC-CG--TCTAAATGCAG-CCAT--TGGT-GGATCCTTGAAAAGATCC--GTCATTCTTTTATTAT--TGTGAAGAATATGTACATGTAGATTCTCTCTCAGGATG-CTGTTAAAGTTCTTAAGGACGGGGTGAAATGTTGT----GAC-ATGTGGAACCCTACTATTGTCTT-TC--TTCTC----ATTGTATTGAA--AAAGGGTTTC--CC-TGTTCTTTGTGGTTATCTCATCAATTGCGGATTGCACTGTGTG---GGCTTTGTAGCCTCGATTACACAGATGcatatgagtgtccctcgagatgaaaatgctcggcgacgggttcttggacccttttggttcttatggtagaccgatga
gi|22 : gagaattatggtcaattaccactactgtcatatcctcccatctgtgaccattaagattgaggTCTTTTAATGGT-AGACCGGTGGTTATAGATCTTTCAACATAGATACCCTAGTTTCACCTACGTAGCG---TT-GGTCACAAACTTTGCAACTTTTAAGATAGATACAGTCGTCCGTGCGACAGG-ATG
gi|10 : GAAGTCG-CCTAATATTCTGTAACTACGG---TCTGTGATAGGACTGCTGAAGGTCTCAGG--GGGTAGAG--TTGTATTTGCATA----AGATATC--------TGAGA-----TGATGATAGATCTTAAATC-CTCCAATCGG-TAATAGGTTGTCCAGTCTAGTCCTCACCAATATGTCCTTTATGTTCC-TGGTGCA--CCTAAGGGCAGTCCGT--AGGT-GGACCTTT------------GTCATTCGTTGGTTCT--TGTGTAGAATAG--AAATG--A---C------AGGATG-GT------------------------AAGTG--GT----GACTAAG-GGA---CC--------CCT-GC--TTCTCTC----TACATTGTAAAATAGATCGTCTGTCTTGTTC-----GGTTAACTCATCAACTGtgtcctcaaggattataatataagccagtggcagggctct
gi|11 : actgcttctgatgacaaactttgcaaccgaggagataaacaaagttatt---CCTGTGATAGGACTGTTCAAACTTTCAGT----GTCT-GAGCTACATTCGCACAATTGATGT-----CTGAGGTCTGAGCATATGTTGA---------AACC-T--CCATTAGGTAAAGAATTATCCAGTCTATCCCTAACATCCATGTCCTTTAGGTTTCTAGG--CG--TCTGGAGGACG-GCAT--AGGG-GACTCATT--GAAAACATCAGCCTTTCATTTATTGG--GATGCAGAATGGGCAGATA--C---C-------------GTCTCGAG--TCTTGAGGGCGGGATGGTATGTAATTTTGAGGTAAAT-GA---CT-TTagg
gi|3 : TGA---------AACC-C--CCGATAGGTAGTGGGTTATCCAGCCTAGTTCTGACTACAATGTTCTTTAAATTTCTAGGT-TG--TCTGAAGGCCT-CCAT--TGCA-GGGTCTTT--AAAGACCCTAGCTATTCTTTCGTTGT--TATATAGAATAGGTAAATG--G---CTTT-TAAGGATG-GTATTGAAGTTCTTCAGTGCGGGGTAAAATGTAGT----CACTAAGGGGA---CT-CTATTG-CCT-TC--TTCTTTCTGTTTATATAGAAGCAGGGAGTTTCTGTC-TGTTC----TGGACAACTCGTCAATTGCTGGTTGTACT---GGAGCAGCTCTAAAGCCTCTTTTACATAGGTGACTTTTC-----AG--GA-GTTTGCT-TTGTTTTGAGT-TTAATTTCG---TG--A---CAGA--G--GAACAG-ATACGACAAA-CTTGT-GTTGCTAAA-CC-CTTAGGTACTCCTTTGAAGATATGAGGTGGGTAACAGCCTGAAGGCAT--CACATACCAGTGTGAGTCAGTGGGTTTTGTGCGGTGGCT------GAATTC---------AATTTCACCGTTC----ATG---AGAGTGATCGAAGTGGTAAGTA--TCCAAGAATACGTTCTTGGA-GCTTGAAATTTC---------CT---------T-----------TG--TAAATTTAATGAAATGAGGAAAT---------GG---------TAAAGGAGATAAAATTTTCAAGTCCATCTCGGCCCTCCT-TTCTTTTCAACTCAATGTCATCTTTGAAACCCAACCAACTATGAAGTTTAAAGGCCGATTGTCTGAGTAAAGTTGCATTCAA--CTGTT-------CCCATGAAAATGTAGGCATACTATGGAGCCAtgaggatctttccttgtttt
gi|40 : TTGGGTAAAGGATTTTCCTACTTGGTTCGAACCACCATGTCTT
gi|31 : caggttttaaagccatcaACGTTTTTCAGATTTCCTGGG-CG--TCTGAAAGCCA-CCA---TGGATGGTTCTTT--GAAGACCATGGCCATTC--TAGAGGTAATGTGAAGAGTGGGAAAAT---G---CTTC-T
gi|18 : ttcagTCATGTTTC--TGT-TGCCTCTGAAGGATG-TCATAGTGG--GGGTCTTT--GAAAACATAAGACGTTCATTTGTCGG--CCTACTGAATGGGTAGACA--T---TTTC-TCAGAATGCAT-TTGAAATACTTGAGGGCGGGATGGTAAGCAGT----tc
gi|5 : atcagtattgaG--TCTGAAGGCTG-TCAT--GTGT-CGTTCTTT--GAAGATCATGGCCATTC--TAGGGGTAATGTGAAGAGGGGGGAAATA--C---TTCT-TCAGAATT-TTGTTCAAATCTTTTAAGACAGGGTGGTACGTAGT----GACCACTGGGA---CT-ATGTCA-CCTATCGATTC---GTGTTTGTATTGTAGTAGGGATTCTCTGTCGTGTTC----T-GACATCTCATCAACAGCTGCTTGCACT---TTGGGGGTTTGATAACCTCTCTTGCACAGATG--TTTT-------A--GATGGGTGCT-CTGTTCT---T--TA----TG---AAGTG---CAGAGTG--GAGCAG-GTACGACGGA--TTGTGGTGGCTACA-CC-TTTAGGTACTACTTTGAATGTATCAGTAGGATGACAACT-------AT--GAGATACAAATTTGAGTCAGTCGGTTTGGTATGGAGACT------GATTTC---------AACATTTCCGTTA----AAA---ATCTTGT--TAACAG----A-------AAAAAGACGTTACTGGA-TGTGGAAATATCAACAGTTAACA---------TGA---------TC--AAA---TTATGGAATGAGT---T---------GGCTAGTTTAATAAAG---------ATGTCAAGATT-TCTCATACTTTTTACCCACTTCGTCGCAATttgtcattttgaggttttctctgtattgtttga
gi|3 : A-GGGTCTTT--AAAGACCCTcaacttacagacc
gi|21 : tgaaacccccgataggtagtgggttatccagcctagttctgactacaatgttctttaaatttctaggttgtctgaaggcctccattgcGCTTGGTTGCCTCTCTTGCAC--GTTTTTTTTT-----GATGGA----TGCTCTTGTTCT---T-ATA-----G---AA--AGTGCAGA--GTAGAGCAG-ATATGGCGTA-CTTG--GTGGCTAAA-CC-TTTAGGTA-----TTG--GGTA-GA-ATGG----CAACTAGATGGCATGGAAT-TATAAAagctattctttcgttgttatatagaataggtaaatggcttttaaggatggtattgaagttcttcagtgcggggtaaaatgtagtcactaaggggactctattgccttcttctttctgtttatatagaagcagggagtttctgtctgttctggacaactcgtcaattgctggttgtactggagcagctctaaagcctcttttacataggtgacttttcaggagtttgctttgttttgagtttaatttcgtgacagaggaacagatacgacaaacttgtgttgctaaacccttaggtactcctttgaagatatgaggtgggtaacagcctgaaggcatcacataccagtgtgagtcagtgggttttgtgcggtggctgaattcaatttcaccgttcatgagagtgatcgaagtggtaagtatccaagaatacgttcttggagcttgaaatttcctttgtaaatttaatgaaatgaggaaatggtaaaggagataaaattttcaagtccatctcggccctcctttcttttcaactcaatgtcatctttgaaacccaaccaactatgaagtttaaaggccgattgtctgagtaaagttgcattcaactgttcccatgaaaatgtaggcatactatggagcca
gi|20 : agGCTTGGTTGCCTCTCTTGCAC--GTTTTTTTTT-----GATGGA----TGCTCTTGTTCT---T-ATA-----G---AA--AGTGCAGA--GTAGAGCAG-ATATGGCGTA-CTTG--GTGGCTAAA-CC-TTTAGGTA-----TTG--GGTA-GA-ATGG----CAACTAGATGGCATGGAAT-TATAAAatacatcacgaggcagccgagt
gi|28 : agCTTTATAGCCTCTCTTGCACACATGGTTTTTC-----AT--G--GTA-ATT-TTGTTCT---TGATAA---AG---TG--C---AAGATTG--AAACAG-ATGCGATGGA-TTCGA-AGGGCTAAGTACTCTCAGGTATTCCTTTatacatcacgaggcagccgagt
gi|12 : CTTTTA-ACAGATAGCTTTGCTTTTAAA--TA-CTCTACT-CTGTTTT---G-G-AATGCTGTGGGA--G---AAGA--G--AGAGAGCATGTGACAAAACTCTT-GTGCCTACA-CC-TTTAGGTACTCTTATAAAGGTATAAAGTG---GATAGCAT-AAGATA---CA-GAATA-----GAATCCACAGACTTTGTATGGAGGCTGCATCAGAATTCTTGCATAATGATTTCATCATT
gi|25 : aaaacatcTATAGATGGCAGTTAGCAGTTTTGGCGTGGAGCCT------GAACTC---------GATATTTCCGTTA----ACG---ACCTTA---GACGTG----CTG--TCTAGAAAGACGATAGTGGA-TGTGGAAATattgagattaacaaaattgggaacattttcaag
gi|15 : aggaggatggcgggattagatatacaGTATGGAGGCT------GAATTTT--------AATTTCACCATTC----CAG---AATGTG---GAAGTG----GTA--TCCGAGAATACGTTCTTGGA-GCTAGAAATTTC---------CA---------CTGTAAATTTTATG--GAA---TGATGAAATGAGT---T---------AGTTAAGGAAATAAAG---------TTTTCAAGTTTATCTCGGCCCTCCG-TCCATTTCATCTCAATGGCATCAATGAAATGCAACTAACTATGGGG
gi|15 : acaagtgtgaatataAACTC---------A-TTTCATCATTCCATAAAATTTACAGTG---GAAATTT---CTAGCTCCAAGAACGTATTCTCGGATACC----ACTTC---------CA---------CATTC-------TG--GAA---TGGTGAAAT
gi|17 : acaagtgtgaatatagtatggaggctgaattttaAGTG---GAAGTG----GTA--TCCAAGAATACGTTCATGGA-GCTGGAAATTTC---------C---------------------------AA---T-GT--AATCTGT---C--------------------TA------------TTTTC------------GCCCTCCG-TCCATTTCA---------CCTCAATGAAACGCAACCAATTATGGGGTTTAAAGGAAG-TTGTCTGAGC-AAGTT---TTCCA-----------------ATGAAAATGCGGGGATACGATGGAGTCATCTTCGTTCCCATAGCTATGCCACTTACTTGTAAGTAATGTTCagttaaggaaataaagttttcaagtttatctcggccctccgtccatttcatctcaatggcatcaatgaaatgcaactaactatgggg
gi|7 : CCAACAAAATATTCTTGAA-GTTGGAAATTTC---------CACCGTGAACCT-----------TGTAGAA---TAATGGAAAGAGT---TTGCAGTCATGA---------TAAAG---------TCATAGAGGCTTTCGCGACTTTCAA-ACCACTTCATTTCAATGTTATATGTGAAATGTAGCCAACTACGAGGTTTA------GATAG--TGAAT-GA------TTCCATTATCTTTATAAAACCC---AAAATGGTG---TA----------ATTTTTGTTCTCATAGTTGTGCCACTGATTTACAGATAATATGAGTCCAAGAA-GCTAAGTGATTCAGTTGAAGAACATTACCTCAAG
gi|2 : ATTGTATGAGG-ATGTTGCGTTCAA--GTCTT-------CCCATGAAAATGTTGGCATACGATGGAGCCATCTTTGTTCCCATAGCTGTGCCACT----TGTAAGTAATGTTCTCCGTTGAACATGAAGTTGTTGAGTTTGATGATATGT--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTG---GGGCCTTGTTATTCCAACCCTCTCTGCAGGCTTCAATGCCTTCCATCATAGGGGATGTTCTTATAAAGTGAAGTCACATCCCTGGTCACAAGAAGAATATTGTCAGGTAGGTTGGAAGAAGGGTTTTTGTTA-TGGTAGCTAGTAGT-----------ATGATGGTA----GCTTTACAACATGTGG----TCGGAGATGTtgtaatgtatgtgtaaagtgaaatagtatccatggtcacaaggcgagtatggtctggcggggtttaatataggtacatgtaatcagatgtgttcttcaggtatgacggtaaatcgtctatgtgctgacggagatgcaagtcattgaattcagatattttatctttggggtgtc
gi|7 : ATGTATGTGTAAAGTGAAATAGTATCCATGGTCACAAGGCGAGTATGGTCTGGCGGGGTTTAATATAGG-------TACATGTAATCAGATGTGTTCTTCAGGTATGACGGTAAATCGTCT---A-TGTGCTG----ACGGAGATGCAAGTCATTGAATT-CAGATATTTTATCTTTGGGGTGTCccaatgacaccatgggacggccaggcatacactctgtttagggggtagataaaattgtccagatctacagttgagagaaagcagtgatacaaagacattgtcaccaagttccttgtctttgtacatctgcttaagagtttttgtgatggtggcaaaaaacgttttcgtagggttggagtccagttaagtgtaaaaccgttcatccgagagttgtctgtgtgcttctaccatgtatgtttccttgtctaataccaccactgttgaccctttgtctgcctttttgttaacaatgtcatcctggtcttttagcttttgtaagactgacctttctttccttagattgtcctggaaccttgctgttttgtcaagtagtttttcgatgtcctgctcaactgcttggatgtaggactcgagggctgcacattttactgatggaggttccaatttgctcttagttcggtagagttt
gi|13 : ccaacaaaatattcttgaagttggaaatttccaccgtgaaccttgtagaataatggaaagagtttgcagtcatgataaagtcatagaggctttcgcgactttcaaaccacttcatttcaatgttatatgtgaaatgtagccaactacgaggtttagatagtgaatgattccattatctttataaaacccaaaatggtgtaatttttgttctcatagttgtgccactgatttacagataatatgagtccaagaagctaagtgattcagttgaagaacattacctcaagtgtaATGATGGTA----GCTTCATAGCATATGGACATGCAGAGATGTAGGTCAATCAATT-CTGAGATTTGCTCCGTGGGGTGCCCAATGGCACACACTAT-GGGTGACCAGGCACACCCTCCTT--GTGGATTTTAGGCAGTAGATAGAATTGCCCA-GGTATATACAGTTGAG--AGGAAGCAATGTTTCAAAGACAT--TTTCACCAATTTCCTCGTCTTTGT-----------AGAGTTTCACTGATGGTGGCAGAAAACGCT--TTG
gi|33 : aaaGTTAATGAATTTCTGGGATTTTTTCCGTGGGGTGTCCG-------TCA------GACACCCTGACATGGCTGTTTT--GTGTATTTCGGGTAGCAAATAAAATTGTTCA-
gi|6 : AATT-CAGATAATCTCTCCGTGGGATGTCTGATGGCACTGACAATGAGTCGACCAGGCACGCCTTCTTT--GTGAATTTTAGGGAGAAAATAAAACTG-CCATGGTCTG--CAGTC-AGCCGGACAG-AGTGCTTCGTAAACGTAGTCTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTCCTCTGTGGGGTCTGAATTCAGCTT------CT--TGTAATACTGCTCATC--AGATAGCTGCCTGTTGGCTTCAGCTACATACGATTCTCT-GTCTAGAACAACTACTGTAGACCCTTTGTCTGC----TTTCTTTACGACAATATCGTC-ACG----GGTTTTGAGAGA-CT--G-AAGGGCAGCTCTCTCTTCCTTGTTGAAGTTATCC-GAAATA--TATG-GTCGTTGAGACAGGATATCTTCGATATTAGACTGC---ACTGCGTAGATATAAGATTCCAAGGCCCCACATTTTTCAAGTGGAGGTTCCCAGGGATTCTTAGGCTTACAAGTAG-AGTTTcttc
gi|29 : TGGGATGTCCTGTAGCAATGACTATTGGACTTCCATGCATGTTTTTTTTTTATGAATTTTAGGAATTAAGT-AAATTTTCCT-GATCTA--CAGTCG
gi|2 : GAGATGTCCAATGACACC----ATGGGACGGCCAGGCATACACTCT-------G--TTTAGGGGGTAGATAAAATTGTCCA-GATCTA--CAGTTGAG--AGAAAGCAGTGATACAAAGACAT--TGTCACCAAGTTCCTTGTCTTTGTACATCTGCTTAAGAGTTTTTGTGATGGTGGCAAAAAACGTT--TTCGTAGGGTTGGAGTCCAG-TTA-------AGTGTAAAACCGTTCATCCGAGAGT--TGTCTGTGTGCTTCTACCATGTAT-GTTTCCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGCCTTTTTGT----TAACAATGTCATC-CTG--GTC-TTTT---AGCTTTTGT-AAGACTGAC-CTTTC---TTTCCTTAGATTGTCCTGGAACCTTGCTGTTTTGTCAAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTGGATGTAGGACTCGAGGGCTGCACATTTTACTGATGGAGGTTCCAATTTGCTCTTAGTTC----GGTAG-AGTTTttggaacaaagcacttc
gi|38 : attgtatgaggatgttgcgttcaagtcttcccatgaaaatgttggcatacgatggagccatctttgttcccatagctgtgccacttgtaagtaatgttctccgttgaacatgaagttgttgagtttgatgatatgttcaaggagcttgaccaacgattctgtggaaggaatttgtggggccttgttattccaaccctctctgcaggcttcaatgccttccatcataggggatgttcttataaagtgaagtcacatccctggtcacaagaagaatattgtcaggtaggttggaagaagggtttttgttatggtagctagtagtatgatggtagctttacaacatgtggtcgACTGCAGATACAATGGGGCGGCCAGGAATATTCTGTTT--GTGTATTTTAGGAAGCATGTAAAAT
gi|14 : ctA--CAGTTGAG--AGGCAGCAATGTTTCAAAGACA-------ACCAATTTTGTCATCTTTGTACATCTGCTTAAGAGTGTCGGTGATTGTGGCAGAAAACGTT--TTGGTAGGGTCGGAATC--------CAGTTTAGTGTAAAACCGTTCATCCGAGAGT--TGTCTATGCGCTTCCTC--TATAT-GTTGTCTTGTCTAATACCACCACTGTTAAC
gi|35 : TGTCTGCT-----TTTTTATGACTATGTCGTCACCGGTTTTTTTTT---AGCAAT--TGGAGGACAGCTCTCTCTTCTTTGCTGAGATTGTCTGaatgtcatactggttttatcaaaatgtc
11 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TGGTGATAGACTCGCAGACAAAAAAATGAACGGCAACCCCCAACCCCCCCTCCCCCCCTCCAGAACAACACCTAATATTAACCACGAGTCAGAAACTATGTCACATTCATTTGTTTGTGTCATGTCATTGGAGGCAATGACCTCCAACCTAATACTGATAGGCATCCAAAACTTCTTGGAGCCTTTTTCGTTGTCTTGTCGCAATATCGACCCAGT
Unaligned ( gi|19 ): GGTGAAGTCATTTAAGTTTATTCAAACCATCAGGGCAAAATGACTTCAGTCTACTTTGTCCAGAACTTCTCCTTGCCTATTCTCTCTGCATCAGAGAGGCATCTAGAGTCGTGATCTGTCATATCCTTCCATCTATGGCCATTAAGGCTGAAGTGATCCCCAACAGATTC
Unaligned ( gi|23 ): ATATTGCTCTAATGAACTGGTAATGGTTTAGCCCGTTGTCATCTTGGAAAAGTCATAGAGTTTGTTAATACCTTGATGTTCGAATGACTTCAGCCTATGCATTTAGAATTTCTCCTTTCGTTTTCTTTAAATATCTGACCA
Unaligned ( gi|24 ): ATGCGCACGAAATCATTCAGTTTGTTCATTCCATCTGGGCGGAATGATTTCAAGCGATGCATCTATGATTTTTCCTGTCTTTTCCTCTCTGCATCGGTCCATGTTGGGTTATAATCGATAATCACCACCTGCATATCT
Unaligned ( gi|26 ): GACTAGGACTGTCGATGAGATTCTCGGTGCTAGAGTTGTGTTTGCGTGATTCTAGACATCCTGATATCAGTATGTTAAAACTGCCTCCATTTAAGCATTAAATTGTTAAGTCTAGTCTTCATCA
Unaligned ( gi|27 ): TGAAAGTTCAATAATTATCAGGCGAATTTGGTGTTGCAGGTCCAATAAATGTAATTTTAATTTAGGGTAACCATTCGGGTCCTTAAGGTGTGACGGTAAATCCTTTACATGCTGACGGGGG
Unaligned ( gi|32 ): AGCAAAGTAATTGAACTATTTTAAACCATCATGGTGAAATTACATCAGCCTGTGAATCTTCTCTTCTTCATCTCTGCAAAAGACTATCTAGACTCGTGAT
Unaligned ( gi|34 ): AGAATAGTGATCAATAACAAACTCATGAATGTCATCCCATTCAGGACCATTGAGGCTGAGACGTTCCATAACTGGTTGTTTTGACGGTGGATCGG
Unaligned ( gi|36 ): TCATTCTATTGAAATTTCTGGTATTTTTCCTGCCATAGGGGCGGAATGATTGCAATATATGCATCGATCAAGGAATGTTAT
Unaligned ( gi|37 ): ATGATGATGCTCAAACAAAGAATAAATGACAAAATCCCCCACAGAACAACACATAGTATTAACTAGGCGAAGCTAGACCAC
Unaligned ( gi|39 ): ATCAATAATCACTACTGTCATGTCTTTCCATTTGTTGAATGCAAAATTAAAATGCTCGGTGAC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2 2 2 1 11 1 2 1111 1 22222 1111 1111111 22222222222 22222 7777777777777777777777 11111111 11 222 11 1111 6666666666 1111111 444444444444 111 111111111 111 111 11111111 11 222222 1 222 111 1 11111 555555555555 22 11 3333333 222 111111 444444444444 111 1111 1111111111111111111111111111111111111111111111111111111111111111111111111111111 22 1111 22222 3333 222 333 5555555555555555 1 1 333333333333333 111 222 1111 22222222 11 11 111 11 4444444444444 11 1 3333 1 11 333333333 111 3333333333 1 2 111 55555555 333 4444 1
lowQualScore : 0 4 0 4 2 0 2 5 88 1 6 3 0 1 7777 1 0 66 1 44444 2 5 0 0000 8888888 3 77777777777 1 88888 1 5555555555555555555555 1 77777777 00 1 8 1 8 2 77 333 2 1 3 4 9 9 6 333 00 1 2 1 77 5 0 0000 1 0 0000000000 99 5555555 222222222222 6 99 3 2 000 4 1 66 0 1 0 1 2 33 8 99 66 0 5 6 5 1 1 66 999 1 1 3 1 2 777777777 111 3 11 3 0 33 0 3 1 8 444 44444444 8 11 333333 1 1 1 1 1 6 0 1 1 1 333 0 6 99 1 55 7 3 77 777 3 6 33333 444444444444 77 11 1 5 44 77 6 0 7 7 1111111 9 3 222 7 2 5 1 1 999999 333333333333 3 1 22 111 4444 1 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 1 3 6 3 5 77 3 77 8 0 8 5 1 6666 0 3 44444 1 333 77 11 1 1 1 2222 2 111 555 2 6666666666666666 5 11 11 1 1 2 1 1 2 0 22 1 33 666666666666666 2 7777 4 2 0 444 6 666 3 1 7777 33 8 1 1 33 1 88888888 6 1 1 77 6 1 1 6 11 0 11 1 111 3 1 2 0 0 2 22 2 11 1 3333333333333 1 0 22 11 2 0 1 3 6666 0 00 555555555 1 777 1111111111 1 2 5 2 2 0 0 11 444 88 0 0 00000000 0 777 7 1 3 1 3 0 1 555 1 333 11 4444 3
lowQualScore : . . . . . . . . .. . . . . . .... . . .. . ..... . . . .... ....... . ........... . ..... . ...................... . ........ .. . . . . . .. ... . . . . . . . ... .. . . . .. . . .... . . .......... .. ....... ............ . .. . . ... . . .. . . . . . .. . .. .. . . . . . . .. ... . . . . . ......... ... . .. . . .. . . . . ... ........ . .. ...... . . . . . . . . . . ... . . .. . .. . . .. ... . . ..... ............ .. .. . . .. .. . . . . ....... . . ... . . . . . ...... ............ . . .. ... .... . . ............................................................................... . . . . . . . .. . .. . . . . . .... . . ..... . ... .. .. . . . .... . ... ... . ................ . .. .. . . . . . . . .. . .. ............... . .... . . . ... . ... . . .... .. . . . .. . ........ . . . .. . . . . .. . .. . ... . . . . . . .. . .. . ............. . . .. .. . . . . .... . .. ......... . ... .......... . . . . . . . .. ... .. . . ........ . ... . . . . . . . ... . ... .. .... .
lowQualScore : 0 0 0 0 5 0 5 0 00 0 5 2 0 2 5555 0 0 66 0 22222 1 7 2 6666 6666666 0 11111111111 0 55555 0 8888888888888888888888 0 00000000 00 0 2 0 0 5 77 333 2 0 2 2 0 3 7 000 88 0 2 0 77 0 9 4444 0 7 7777777777 22 2222222 555555555555 3 22 7 5 000 0 4 11 4 0 4 0 3 44 7 33 99 2 0 8 0 0 0 99 444 0 0 5 0 8 888888888 333 0 77 0 4 44 3 8 0 8 000 22222222 0 00 222222 4 0 0 0 8 0 8 0 0 0 222 2 7 22 0 77 5 7 77 000 3 7 33333 444444444444 99 44 0 7 44 99 6 7 3 3 5555555 8 3 000 1 3 6 4 0 222222 222222222222 7 0 00 777 2222 0 3 2222222222222222222222222222222222222222222222222222222222222222222222222222222 8 5 0 5 7 7 6 88 2 55 0 8 0 0 4 0000 8 8 55555 0 000 33 77 0 0 0 0000 5 555 000 5 5555555555555555 0 77 33 0 0 0 0 0 0 8 00 0 00 555555555555555 0 5555 5 5 2 000 4 000 2 0 0000 55 0 0 0 88 0 77777777 0 0 4 99 6 0 7 7 00 7 00 0 888 8 4 8 4 8 6 66 2 00 0 8888888888888 2 2 00 22 0 0 0 2 5555 0 88 222222222 0 555 2222222222 0 0 5 5 5 8 0 77 000 33 7 7 33333333 7 333 3 0 7 0 7 7 0 333 0 000 77 3333 3
consensus : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCGAGGNGTAAAGTCTGGTGGGGCTTAGCNCANGTTCATTCTAGCAAANTCATTCGATTTTATTCAATTGCCATTTTCTCCTTGTTTT-TTC-TTTCNAGNGTCGNTCCA-GTTAGGGTTAT-G-GTCAATAACCACNA-CCGTCATGT----CC-------TCCCA-----------CGGGNTCG--A--TGNTCC-----GT--T------------TGGTCCTAAT-AGTGGACCGGTGGTTGTTGATTCTTCTACGGAGGTCACCT-GTTTCACCTACGTACTGC-TTTTGG---CANACCTTACAACCGATAAGGTAGACGCAGTTGTCCGTGCGACA-GGACGTNGCT-CCCAANATTTTGTAGCTNCG-NCCTGTGAC-AGGACTGC---TGAAANTGTCAGT-G-T--C---G--CTGCGTTTGCAC-ATN--AGGCATC--T--C---A--TCNGA--ACANGTNTTGAAAC---CNCCGTT-GGGTAATGGGTTGTCCAGCCTAGTCCTNACCACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATNG-GNGGNTCTTTG--AAGACCCTAGCCATTCNTTNGTTGNTGTGNAGAATGGGNAAATG-----NCT-TCTCAGGATGNTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCG-CCT-TC--TTCTCTCCGNTTATATTGAAGNAGGGATTCTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGNTTGCAC-T-TGGG-G--GCTTTGTAGCCTCTCTTGCACAGGTGNTTTTTCGATGG-N-TGCT-TTGTTC-TT-A---TAA--C-GNAA---CAGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCCTTAGGTACTCCTTTGAAGGTATGAGGT-GG-TGACAACT-GATGGCATGGNATATATAAATGTGAGTCAGCGGGTTTNGTGTGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANCGTG---GAAGTG----GTATCCAAGAATACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----ATAAAGTTNTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAAGG-CGA-TTGTCTGAGT-AAGTTGCGTTCAAATCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCAC-TGACTTGTAAGTAATGTTCGCCGTTGAACGCGAAGTTATTGAGTTTGAGGACATNA--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTGTCAGGGCCCTGCTATCCCAANCCTCTCTGCAGGCTTCAATGCCTTCCATCGTGGGGGATGTTCGTGTAAAGCGAAGTCGTATCCATGGTCGCGAGGNGAATATNGTCNGGCAGGTTNNAANAAAGGT--TTTTG--TTA-AGGTAACCAGTNGTGTCCTTCAGGTATGACGGTAG---CTTNACAACGTGCGGACG----GAGATGTAGGTCAATGAATT-CTGAGATTTTCTCCGTGGGGTGTCCGATGGCACTNACTA-TGGGACGGCCAGGCATGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GG--TCTACAGTCGAG--AGGCAGCAATGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTNTCGNTGATNGTGGCAGAAAACGTT--TTNGTGGGGTCGGAGTCCAG-T-------TNTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCCGCTATGTATG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CC-G-T--TNTTTT---AGC-C-T---TA-AGGNCAGCTCTCTCTTCTTTGCTNAGATTGTCC-GGAATATT-CTGTTTCGTCGAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTNGATGTAGGACTCGANGGCCGCACATTTTNCTANTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAG-AGTTT
Reference ( family-3283 ) : CAATGAAATTTAC-ACGAGTATAGGTTGTGAAGAGAGGCGAGGAGTAAAGTCTGGTGGG-CTTAACATACGTTCATTCT-GCAAAGTCATTCGATTTTATTCAATTGCCANTTTCTCCTTGTTTT-TTCGTTTCNAGNGTCGNTCCA-GTNAGNGTT-T-G-GTCAATAACCACTA-CTGTCATGT----CC-------TCCTA-----------CGGGNTCG--N--TGNTCC-----GT--T------------TGGTCCTNAT-GGCGNATCGGTGGTTGTTGATCCTTCNACGNAGGTCNCCT-GTTTCACCTACGTATTGC-TTTTGG---CAAACCTTACAACTNATAAGGTAGATACAGTCGTCCGTGCGACA-GGACGNNGCT-CCCAANATTCTGTAGCTNCG-NCCTGTGAC-AGGACTGC---TGAAANTGTCAGT-GGT--C---G--CTGTGTTTGCAC-ATN--AGGCATC--C--C---A--TCGGA--ACATGTGTTGAAAC---CCCCGTT-GGGTAATGGGTTGTCCAGTCTAGTTCTNACCACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATTG-GNGGNTCTTTG--AAGACCCTAGCCATTCNTTNGTTGTTGTGNAGAATGGGNAAATG-----NCT-TTTCAGGATGGTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCG-CCT-TC--TTCTCTCTGTTTGTATTGNAGNAGGGANTTTCTGTC-TGTTCTGGNCANCTCATCAACTGCTGNTTGCAC-T-TGGG-G--GCTTNGTAGCCTCTCTTGCACAGGTGNTTTTTCGAGAG-T-TGCT-TTGTTC-TT-A---TAA----GNAA---CAGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCTTTAGGTACTCCTTTGAAGGTATGAGGT-GG-TGACAACTNGANGGCATGGNATATATAAATGTGAGTCAGCGGGTTTNGTATGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANNGTG---GAAGTG----GTATCCAAGAANACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----ATAAAGTTTTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAAGG--GA-TTGTCTGAGT-AAGTTGCGTTCNANTCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCAC-T-ACTTGTAAGTAATGTTCNCCNNNGAACGCGAAGTNGTTNAGTTNGANGACATNNCCTCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTG---GGGCCTTGTTATTCCAACCCTCTCTGCAGGCTTCAATGCCTTCCATCATAGGGGATGTNCGTGTAAAGTGAAGTCGCATCCNTGGTCACAAGGNGAGTATNGTCNGGCGGGNTNNAANANGGGT--TTTTG--TTACNNGTAGCCAGNNGTGTTCTTCAGGTATGACGGTAG---CTTCACAGCGTGCGGNCG----GAGATGTAGGTCAATGAATT-CNGANATTTTCTCCGTGGGGTGTCCGATGGCACNNAC-A-TGGGACGNCCAGGCACGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GG--TCTACAGTCGAG--AGGNAGCAGTGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTTTCGGTGATGGTGGCAGAAAACGTT--TTNGTAGGGTCGGAATCCAG-T-------TCTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCNNCCATATACG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CC-G----TNTTTT---AGC-N-T---TA-AGGNCGGCTCTCTCTTCTTTGCTGAGATTGTCC-GGAACNTTNNTGTNTCGTCGAGACAGGATATCTTCGATGTCAGACTGCTCAACTGCNTGGATGTAGGACTCNAGGGCCGCACATTTTNCNGGTGGAGGTTCCNANNNGCTCTTAGNCCTACAGGTAG-AGTTT
gi|1 : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCAAGGTGTAAAGTCTGGTGGGGCTTAGCTCAAGTTCATTCTAGCAAATTCATT-GATTTTATT--ATTGCCAATTTCTCTTTGTTTTATTC-TTTC-AGAGTCACTCCA-GTTAGGGTTGT-G-GTCAATAACTACGA-CCGTCATGT----CC-------TCTTA-----------CGGGTTCG--G--TGATTC-----GT--T------------TGGTCTTTAT-AATATACCGGTGTTTGTTGACTCTTCTTCGGAGGTCACCT-GTTTCACATACCTACTGC-TTTTGG---CATTTCTTACAACTGATAAGGTAGGTGCAGTTGTCAGTGCGGCA-GGACGAAGCT-CCCAAAATTTAGTAGCTCTG-TCCTGTCAC-CGGACTGC---TGAAAGTGTCAGTTGGC--CC--G--CTGAATTTGCAC-ATG--AGGCATC--A--CTT-A--TCAGA--ACACGTGATGAAAC---CCCAGTT-GGGTAATGGGTTATACAGCCTAGTTCTAACTACAATGTCCTTTATATTTCAAGGT-TG--TCTGAAGGCCG-CCATTG-GAGGGTCTTTA--AAGATCCTAGCCATTCGTTTGTTGTTATGCAGAATGGGCAAATG-----GCT-TTTAAAGATGGTATTGAGGTTCTTCAGGGCGTGATGAAATGTAGTAACTAAATGGA---CT-CTATTG-CCT-TC--TTCTCTCCGGTTATATAGAAGCAGAGAGTTTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGCTTGTAC-T-CGAACA--GCTTTATAGCCTCTTTTACATAGGTGGCTTTTCAAGAG-TCTGCT-TTGTTT-TT-C---TAATTCCGAAC---CAGA--G--GAACAGATACGACGAA-CTCGT-GTAGCTAA--AACCTTAGGTACTCCTTTGAAGGTATGAGATGGG-TGACAGCTTGAAGGCAT--CATGTATAAATGTGAGTCAGCGGGCTTTGTGTGGAGGTTG------AATTC---------A--ATTTTATCATTCAAGAGAGTG---GAAGTG----ATATCCAAGAATATGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGGTGAAATGAGT---TGG-------------------TAAAGTTTTCAAGCCTATCTCG-GCCCTCCTTCCATTTCATTTCAATGTCATCAATGAAACACAACCAACTATGGGGTTTAAAGGGCGA-TTGTCTGAGT-AAGTTGTGTTCCAATCTTCCCATGAAAATGTTGGGATACGAATGAGCCATTTTCGTTCCCATAGCTGTGCCAC-TAACTTGTAAGTAATGTTCGCCGTTGAACACGAAGTTATTGAGTTTGAGGACATAA--TCAAGGAGCTTGACCAATTATTCTGTGGAAGGA---TGTGTCAGAACCCTGCTATCCCAAACCTC----------------CCTT-CATCGTGGGAGATGTTTGTGTGAAGCAAAGTCATATCCATGGTTGCGAGAAGGATATTATCAGGTAGGTTGGAAGAGAGGG--TTTTG--TTA-AGGTAATCAGTGGTGTCCTTCAAGGATGATGGTAG---TTTAACA---TGTAGGCG----GAGGTGTAGGTCAATAAATT-CTGAGATTTTCTCCTTGGGGTATCCAATTGCACTCACTA-TAGGGCGGCCAGGCATACCTTCTTT--GTGGATTTTAGGCGGTAAATAAAATTGTCCA-GG--TCTACAGTTGAG--AGGCATCAATGTTTCAAAGACAT--TATTACCAATTTTCTCGTCTTTGTACATTTGCTCAAGAGTGTCGTTGATTGTGGCAGAAAACGTT--TTGGTGGGGTCGGAGTCCAG-TTTAGCAGTTTAGTGTAAAACCGTTCATCCGGGACATGTCTGTGCGCTTCCGCTGTGTATA-TTATCTTGTCTAATACCACCAATGTTGACCCTCTGTCTGCTTTTTTTTT-TTATAACAATGTCATC-CC-GTT--TGTTTT---AGCTC-T---TA-AGGCTAAC-CTCTCTTATTTGCTTAACTTGTCCGGGAATATTTCTGTTTTGTTGAG-TAG--T-TTTTCAATGTC---CTGCTCAACTAATTCGATGTAGGGCTCGATGGCTGCACATGTTCCTATTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAGTAGTTT
gi|10 : ACTGC-TTCTGATGACAAACTTTGCAACCGAGGAGATAAACAAAGTTATT-----------GAAGTCGC---CTAATATTCTGTAACTACG-GTCTGTGAT-AGGACTGC---TGAAGGTCTCAGG-GGG--TAGAG--TTGTATTTGCA---TA--AGATATC--T--G---A--GATGATGATAGATCTTAAATC---CTCCAAT-CGGTAATAGGTTGTCCAGTCTAGTCCTCACCAATATGTCCTTTATGTTCCT-GGTGCA--CCTAAGGGCAGTCCGTAG-GTGGACCTTTG------------TCATTCGTTGGTTCTTGTGTAGAATAG--AAATG-----A------CAGGATGGT----AAG----------------------TGGTGACTAAG-GGA---CC--------CCT-GC--TTCTCTC----TACATTGTAAAATAGATCGTCTGTCTTGTTC-GGTTAACTCATCAACTG
gi|11 : CCTGTGAT-AGGACTGT---TCAAACTTTCAGT-G-T--CTGAG--CTACATTCGCAC-AAT--TGATGTC--T--G---AGGTCTGA--GCATATGTTGAAAC---CTCCATT-AGGTAAAGAATTATCCAGTCTATCCCTAACATCCATGTCCTTTAGGTTTCTAGG--CG--TCTGGAGGACG-GCATAG-GGGACTCATTG--AAAACATCAGCCTTTCATTTATTGGGATGCAGAATGGGCAGATA-----CCG-TCTCGAG-------------TCTTGAGGGCGGGATGGTATGTAATagg
gi|12 : AA---GAGA--GA-GAGCA--TGTGACAAAACTCTT-GTGCCTAC--ACCTTTAGGTACTCTTATAAAGGTATAAAGT-GG-----------ATAGCATAAGATACA-GAATA-GAATCCACAGACTTTGTATGGAGGCTGCATCAGAATTCTTGCATAATG--ATTTCATCATTtttgaggtaaatgacttttgaggatctttccttgtttt
gi|13 : aaaacatccttttaacagatagctttgcttttaaatactctactctgttttggaatgctgtgggagATGATGGTAG---CTTCATAGCATATGGACATGCAGAGATGTAGGTCAATCAATT-CTGAGATTTGCTCCGTGGGGTGCCCAATGGCACACACTA-TGGG-TGACCAGGCACACCCTCCTT--GTGGATTTTAGGCAGTAGATAGAATTGCCCA-GGTATATACAGTTGAG--AGGAAGCAATGTTTCAAAGACAT--TTTCACCAATTTCCTCGTCTTTGT-----------AGAGTTTCACTGATGGTGGCAGAAAACGCT--TTattgagattaacaaaattgggaacattttcaag
gi|14 : aaaACAGTTGAG--AGGCAGCAATGTTTCAAAGACA-------ACCAATTTTGTCATCTTTGTACATCTGCTTAAGAGTGTCGGTGATTGTGGCAGAAAACGTT--TTGGTAGGGTCGGAATCCAG-T-------T-TAGTGTAAAACCGTTCATCCGAGAGTTGTCTATGCGCTTCCTC--TATATG-TTGTCTTGTCTAATACCACCACTGTTAACg
gi|15 : TAGTATGGAGGCTG------AATTTT--------A--ATTTCACCATTCCAGAATGTG---GAAGTG----GTATCCGAGAATACGTTCTTGGAGCTAGAAATTTC---------CA---------CTGTAAATTTTATG--GAA---TGATGAAATGAGT---TAG-TTAAGGA----A-----ATAAAGTTTTCAAGTTTATCTCG-GCCCTCCGTCCATTTCATCTCAATGGCATCAATGAAATGCAACTAACTATGGGGaatgtcatactggttttatcaaaatgtc
gi|17 : acaagtgtgaataGTG---GAAGTG----GTATCCAAGAATACGTTCATGGAGCTGGAAATTTC---------C--------------------------------------AATG----------------------------TAA---TCT---GTCTATTTTC-GCCCTCCGTCCATTTCACCTCAATG---------AAACGCAACCAATTATGGGGTTTAAAGG--AAGTTGTCTGAGC-AAGTT-----------TTCCAATGAAAATGCGGGGATACGATGGAGTCATCTTCGTTCCCATAGCTATGCCACTT-ACTTGTAAGTAATGTTC
gi|18 : aTCATGTTTCT--GT-TGCCTCTGAAGGATG-TCATAGTGGGGGTCTTTG--AAAACATAAGACGTTCATTTGTCGGCCTACTGAATGGGTAGACA-----TTT-TCTCAGAATGCATTTGAAATACTTGAGGGCGGGATGGTAAGCAGT
gi|2 : atcagtattgaA-TTGTATGAGG-ATGTTGCGTTCAAGTCTTCCCATGAAAATGTTGGCATACGATGGAGCCATCTTTGTTCCCATAGCTGTGCCAC-T----TGTAAGTAATGTTCTCCGTTGAACATGAAGTTGTTGAGTTTGATGATATGT--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTG---GGGCCTTGTTATTCCAACCCTCTCTGCAGGCTTCAATGCCTTCCATCATAGGGGATGTTCTTATAAAGTGAAGTCACATCCCTGGTCACAAGAAGAATATTGTCAGGTAGGTTGGAAGAAGGGT--TTTTG--TTA-TGGTAGCTAGTA-----------GTATGATGGTAG---CTTTACAACATGTGGTCG----GAGATGT---CCAATGAttgtcattttgaggttttctctgtattgtttga
gi|2 : GAGATGTCCAATGACAC---C-A-TGGGACGGCCAGGCATACACTCT------G---TTTAGGGGGTAGATAAAATTGTCCA-GA--TCTACAGTTGAG--AGAAAGCAGTGATACAAAGACAT--TGTCACCAAGTTCCTTGTCTTTGTACATCTGCTTAAGAGTTTTTGTGATGGTGGCAAAAAACGTT--TTCGTAGGGTTGGAGTCCAG-T-------TA-AGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGTGCTTCTACCATGTATG-TTTCCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTTGTTA--ACAATGTCATC-CTGG----TCTTTT---AGC-T-TTTGTA-AGACTGAC-CT---TTCTTTCCTTAGATTGTCCTGGAACCTTGCTGTTTTGTCAAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTGGATGTAGGACTCGAGGGCTGCACATTTTACTGATGGAGGTTCCAATTTGCTCTTAGTTC----GGTAG-AGTTTcaccatgggacggccaggcatacactctgtttagggggtagataaaattgtccagatctacagttgagagaaagcagtgatacaaagacattgtcaccaagttccttgtctttgtacatctgcttaagagtttttgtgatggtggcaaaaaacgttttcgtagggttggagtccagttaagtgtaaaaccgttcatccgagagttgtctgtgtgcttctaccatgtatgtttccttgtctaataccaccactgttgaccctttgtctgcctttttgttaacaatgtcatcctggtcttttagcttttgtaagactgacctttctttccttagattgtcctggaaccttgctgttttgtcaagtagtttttcgatgtcctgctcaactgcttggatgtaggactcgagggctgcacattttactgatggaggttccaatttgctcttagttcggtagagttt
gi|20 : attgtatgaggatgttgcgttcaagtcttcccatgaaaatgttggcatacgatggagccatctttgttcccatagctgtgccacttgtaagtaatgttctccgttgaacatgaagttgttgagtttgatgatatgttcaaggagcttgaccaacgattctgtggaaggaatttgtggggccttgttattccaaccctctctgcaggcttcaatgccttccatcataggggatgttcttataaagtgaagtcacatccctggtcacaagaagaatattgtcaggtaggttggaagaagggtttttgttatggtagctagtagtatgatggtagctttacaacatgtggtcg-G--GCTTGGTTGCCTCTCTTGCAC--GTTTTTTTTTGATGG-A-TGCTCTTGTTC-TT-A---TA-----GAAAGTGCAGA--GTAGAGCAGATATGGCGTA-CTTG--GTGGCTAA--ACCTTTAGGTA-----TTG--GGTA-GA-----A-TGGCAACTAGATGGCATGGAAT-TATAAA
gi|21 : a-G--GCTTGGTTGCCTCTCTTGCAC--GTTTTTTTTTGATGG-A-TGCTCTTGTTC-TT-A---TA-----GAAAGTGCAGA--GTAGAGCAGATATGGCGTA-CTTG--GTGGCTAA--ACCTTTAGGTA-----TTG--GGTA-GA-----A-TGGCAACTAGATGGCATGGAAT-TATAAAatacatcacgaggcagccgagt
gi|22 : aTAAT-GGTAGACCGGTGGTTATAGATCTTTCAACATAGATACCCTAGTTTCACCTACGTAGCG----TTGGTCACAAACTTTGCAACTTTTAAGATAGATACAGTCGTCCGTGCGACA-GGATGTGTCC-TCAAGGAT--TATAATATAA-GCCAGTGGC-AGGGCTatacatcacgaggcagccgagt
gi|24 : tctttTTTTTCCT-GTCTT-TTCCTCTCT-GCATCGGTCCATGTT-GGGTTAT-A-ATCGATAATCACCACCTG-CATAT----Cct
gi|25 : atgcgcacgaaatcattcagtttgttcattccatctgggcggaatgatttcaagcgatgcatctatgaACATATAGATGGCAGTTAGCAGTTTTGGCGTGGAGCCTG------AACTC---------G--ATATTTCCGTTAACGACCTTA---GACGTG----CTGTCTAGAAAGACGATAGTGGATGTGGAAATt
gi|26 : aggaggatggcgggattagatatGACTAGGACTGTCGATGAGATTCTCGGT-GCT--A---GAGTTGTGTTTGCGTGATTCTAGACATC--C--TGATA--TCAG------TATGTTAAAACTGCCTCCATTTAAGCATTAAATTGTTAAGTCTAGTCTTCATCA
gi|27 : AGGCGAATTTGGTGTTGCAGG-TCCAATAAATGTAATTTTAATTTA-GGGTAACCATTCGGGTCCTTAAGGTGTGACGGTAAATCCTTTACA---TGCTGACG----GGG
gi|28 : tgaaagttcaataattatcCTTTATAGCCTCTCTTGCACACATGGTTTTTC-ATGG-T-AATT-TTGTTC-TTGA---TAAAGT-GCAA---GATT--G--AAACAGATGCGATGGA-TTCGA-AGGGCTAAGTACTCTCAGGTATTCCTTTg
gi|29 : TGGGATGTCCTGTAGCAATGACTA-TTGGACTTCCATGCATGTTTTTTTTTTATGAATTTTAGGAATTAAGTAAA-TTTTCCT-GA--TCTACAGTCG
gi|3 : TGAAAC---CCCCGAT-AGGTAGTGGGTTATCCAGCCTAGTTCTGACTACAATGTTCTTTAAATTTCTAGGT-TG--TCTGAAGGCCT-CCATTG-CAGGGTCTTTA--AAGACCCTAGCTATTCTTTCGTTGTTATATAGAATAGGTAAATG-----GCT-TTTAAGGATGGTATTGAAGTTCTTCAGTGCGGGGTAAAATGTAGTCACTAAGGGGA---CT-CTATTG-CCT-TC--TTCTTTCTGTTTATATAGAAGCAGGGAGTTTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGGTTGTAC---TGGA-GCAGCTCTAAAGCCTCTTTTACATAGGTGACTTTTCAGGAGTT-TGCT-TTGTTT-TG-AGTTTAATTTCGTGA---CAGA--G--GAACAGATACGACAAA-CTTGT-GTTGCTAA--ACCCTTAGGTACTCCTTTGAAGATATGAGGTGGG-TAACAGCCTGAAGGCAT--CACATACCAGTGTGAGTCAGTGGGTTTTGTGCGGTGGCTG------AATTC---------A--ATTTCACCGTTCATGAGAGTGATCGAAGTGGTAAGTATCCAAGAATACGTTCTTGGAGCTTGAAATTTC---------CT---------T-----------TG--TAAATTTAATGAAATGAGGAAATGG-T-----A----AAGGAGATAAAATTTTCAAGTCCATCTCG-GCCCTCCTTTCTTTTCAACTCAATGTCATCTTTGAAACCCAACCAACTATGAAGTTTAAAGGCCGA-TTGTCTGAGTAAAGTTGCATTCAACTGTTCCCATGAAAATGTAGGCATACTATGGAGCCAttggaacaaagcacttc
gi|30 : TCAATAACCACCA-CCGTCATGT----CT-------TCCCA-----------TG
gi|31 : ACGTTTTTCAGATTTCCTGGG-CG--TCTGAAAGCCA-CCATGG-ATGGTTCTTTG--AAGACCATGGCCATTCTAGAGGTAATGTGAAGAGTGGGAAAATG-----CTT-CTTCcatatgagtgtccctcgagatgaaaatgctcggcgacgggttcttggacccttttggttcttatggtagaccgatga
gi|33 : ttcagGTTAATGAATTTCTGGGATTTTTTCCGTGGGGTGTCCG--------------TCAGACACCCTGACATGGCTGTTTT--GTGTATTTCGGGTAGCAAATAAAATTGTTCA-
gi|35 : TTGTCTGC-----TTTT-TTATGACTATGTCGTCACC-GGTTTTTTTTT---AGC-AAT---TGGAGGACAGCTCTCTCTTCTTTGCTGAGATTGTCT-Gcttc
gi|38 : GCAGATAC-AATGGGGCGGCCAGGAATATTCTGTTT--GTGTATTTTAGGAAGCATGTAAAATa
gi|39 : ctactTCAATAATCACTA-CTGTCATGT----CT-------TTCCA-----------
gi|4 : aAGAATTAT-G-GTCAATTACCACTA-CTGTCATAT----CC-------TCCCA-----------tttgttgaatgcaaaattaaaatgctcggtgac
gi|4 : gTGT----TC-------CCCGA-----------CGGGCTCT--T--TGGTTC-----TT--T------------TTGTCCTAAT-GGTGGATCGGTGGTTGTTTATTCTTTGGCGGATGTCACCC-GTTTCTCCAACATATTGC-TTTGAG---CAAACCTTACAATTGA---GATACACACAGTTGTCTGTGTGACA-GGAC-ATGTTACCCAATATTTTGTAGATGCG-ACCAGTAAC-GGG-CTAG---TAAATTTGTCAGT----------G--CTGTGCTTACAC-AAA--AGGCATC--TGGC---A--TCGGA--ACAAGTTTTAAAAC---CACCATT-GGGTAATGGGTTGTCTAATTTCGCTCTCACTACCATGTCCTT----TTCCTAGGC-CG--TCTAAATGCAG-CCATTG-GTGGATCCTTGAAAAGATCC--GTCATTCTTTTATTATTGTGAAGAATATGTACATGTAGATTCTCTCTCAGGATGCTGTTAAAGTTCTTAAGGACGGGGTGAAATGTTGTGAC-ATGTGGAACCCTACTATTGTCTT-TC--TTCTC----ATTGTATTGAAAAAGGGTTTCCCTGTT-CTTTGTGGTTATCTCATCAATTGCGGATTGCAC-TGTGTG-G--GCTTTGTAGCCTCGATTACACAGATGtctgtgaccattaagattgaggtgttccccgacgggctctttggttctttttgtcctaatggtggatcggtggttgtttattctttggcggatgtcacccgtttctccaacatattgctttgagcaaaccttacaattgagatacacacagttgtctgtgtgacaggacatgttacccaatattttgtagatgcgaccagtaacgggctagtaaatttgtcagtgctgtgcttacacaaaaggcatctggcatcggaacaagttttaaaaccaccattgggtaatgggttgtctaatttcgctctcactaccatgtccttttcctaggccgtctaaatgcagccattggtggatccttgaaaagatccgtcattcttttattattgtgaagaatatgtacatgtagattctctctcaggatgctgttaaagttcttaaggacggggtgaaatgttgtgacatgtggaaccctactattgtctttcttctcattgtattgaaaaagggtttccctgttctttgtggttatctcatcaattgcggattgcactgtgtgggctttgtagcctcgattacacagatg
gi|40 : gagaattatggtcaattaccactactgtcatatcctcccatctgtgaccattaagattgaggCAGGTTTTAAAGC---CATCATT-GGGTAAAGGATTTTCCTACTTGGTTCGAACCACCATGTCTT
gi|5 : G--TCTGAAGGCTG-TCATGT-GTCGTTCTTTG--AAGATCATGGCCATTCTAGGGGTAATGTGAAGAGGGGGGAAATA-----CTT-CTTCAGAATTTTGTTCAAATCTTTTAAGACAGGGTGGTACGTAGTGACCACTGGGA---CT-ATGTCA-CCTATCGATTCG---TGTTTGTATTGTAGTAGGGATTCTCTGTCGTGTTCT-GACATCTCATCAACAGCTGCTTGCACTT-TGGG-G--GTTTGATAACCTCTCTTGCACAGATG--TTTTAGATGG-G-TGCT-CTGTTCTTT-A---TGA----AGTG---CAGAGTG--GAGCAGGTACGACGGA--TTGTGGTGGCTAC--ACCTTTAGGTACTACTTTGAATGTATCAGTA-GGATGACAACT-------ATG--AGATACAAATTTGAGTCAGTCGGTTTGGTATGGAGACTG------ATTTC---------AACATTT--CCGTTAAAAATCTTG---TTAACA----G-A---AAAAAGACGTTACTGGATGTGGAAATATCAACAGTTAACA---------TGA---------TC--AAA---TTATGGAATGAGT---TGGCT-----AGTTTA-----ATAAAGATGTCAAGATT-TCTCATACTTTTTACCCACTTCGTCGCAAT
gi|6 : AATT-CAGATAATCTCTCCGTGGGATGTCTGATGGCACTGAC-AATGAGTCGACCAGGCACGCCTTCTTT--GTGAATTTTAGGGAGAAAATAAAACTG-CCATGG--TCTGCAGTC-AGCCGGACAG-AGTGCTTCGTAAACGTAGTCTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTCCTCTGTGGGGTCTGAATTCAGCT-------TCT--TGTAATACTGCTCATCAGATAGCTGCCTGTTGGCTTCAGCTACATACGATTCTCT-GTCTAGAACAACTACTGTAGACCCTTTGTCTGC----TTTCT-TTACGACAATATCGTC-AC-G----GGTTTTGAGAGA-C-T---GA-AGGGCAGCTCTCTCTTCCTTGTTGAAGTTATCC-GAAATAT--ATG-GTCGTTGAGACAGGATATCTTCGATATTAGACTGC---ACTGCGTAGATATAAGATTCCAAGGCCCCACATTTTTCAAGTGGAGGTTCCCAGGGATTCTTAGGCTTACAAGTAG-AGTTTcaacttacagacc
gi|7 : CCAACAAAATATTCTTGAAGTTGGAAATTTC---------CACCGTGAACCT-----------TGTAGAA---TAATGGAAAGAGT---TTG-C-----A----GTCATGATAAAGTCATAGAGGCTTTCGCG-ACTTTCAAACCACTTCATTTCAATGTTATATGTGAAATGTAGCCAACTACGAGGTTTA------GA-TAG--TGAAT-GA-TTCCATT---ATCTT--TATAAAA-------CCCAAAATGGTGTAATTTTTGTTCTCATAGTTGTGCCAC-TGATTTACAGATAATATGAGTCCAAGAA-GCTAAGTGATTCAGTTGAAGAACATTACCTCAAG
gi|7 : ATGTATGTGTAAAGTGAAATAGTATCCATGGTCACAAGGCGAGTATGGTCTGGCGGGGTTTAATATAGGT-----------ACATGTAATCAGATGTGTTCTTCAGGTATGACGGTAA---ATCGTCTATGTGCTGACG----GAGATGCAAGTCATTGAATT-CAGATATTTTATCTTTGGGGTGTCtgtaatgtatgtgtaaagtgaaatagtatccatggtcacaaggcgagtatggtctggcggggtttaatataggtacatgtaatcagatgtgttcttcaggtatgacggtaaatcgtctatgtgctgacggagatgcaagtcattgaattcagatattttatctttggggtgtc
gi|8 : ccaacaaaatattcttgaagttggaaatttccaccgtgaaccttgtagaataatggaaagagtttgcagtcatgataaagtcatagaggctttcgcgactttcaaaccacttcatttcaatgttatatgtgaaatgtagccaactacgaggtttagatagtgaatgattccattatctttataaaacccaaaatggtgtaatttttgttctcatagttgtgccactgatttacagataatatgagtccaagaagctaagtgattcagttgaagaacattacctcaagtgtaCAATGAAATTTAC-ACGAGTATAGGTTGTGAAGAGAGGCGAGGAGTAAAGTCTGGTGGG-CTTAACATACGTTCATTCT-GCAAAGTCATTCGATTTTATTCAATTGCCATTTT
gi|8 : ATTTTCTC-TTGTTTT-TTCGTTTCAAGAGTCACTCCA-GTTAGGGTT-T-GCGTCAA-AACTACGA-CTGTCCT-T----CT-------TCCCATTTGTAACCCTCTAGGTTGAAA--TGTTCCCAACGGT--TCGGTGATCCGTTTGGTCTTAATAAGTGA--CGGTGATTGTTGACTCTTCT-CGGA-GTCACCT-GTTTCACCTACGTACTGCTTTTTGG---CATTTCTTACAACCGATAAGGTAGAT-CAGT-G-CAGTACGGCAGGGACATAGCT-CCCAAAATTTTGTAGCTCTGTTCCTGTCAC-CGGGCTGC---TGAAAGTGTCAGT-gaggccgaaatgactttaaatctgtgcatcagaattttctcttgttttttcgtttcaagagtcactccagttagggtttgcgtcaaaactacgactgtccttcttcccatttgtaaccctctaggttgaaatgttcccaacggttcggtgatccgtttggtcttaataagtgacggtgattgttgactcttctcggagtcacctgtttcacctacgtactgctttttggcatttcttacaaccgataaggtagatcagtgcagtacggcagggacatagctcccaaaattttgtagctctgttcctgtcaccgggctgctgaaagtgtcagt
gi|9 : caatgaaatttacacgagtataggttgtgaagagaggcgaggagtaaagtctggtgggcttaacatacgttcattctgcaaagtcattcgattttattcaattgccattttgaggccgaaatgactttaaatctgtgcatcagaTCTCCTTATTTT-TTC-TTTCCA-TATTGGTCCA-GTGCACGTT-TTG-GTCAATAGCCACTA-CTGTCATGTTTTCCCATTCATGTCCTG-----------CGAGATCG--AAATGCTCT-----GCAAC------------TGATTCTTTC-AACCATTTGGTAGTTATTGATCCTCCTACGTAAGTCTCCT-GTTTCATCTACGTATTGT-TGATCA---CAGAGCTTACAGTTTATGTTGGAAATGCAATTATCCGTGCGACA-GGCTGTTTCC-CCCAGAATTCAGTAGTGTCA-ACTTGTGAC-AGGACTCT---TAAAACTGTTACT-TCTAGC---G--CTGTGTTTGCAT-ATC--GGGCATCTAC--C---A--TCAGA--ACATG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TGGTGATAGACTCGCAGACAAAAAAATGAACGGCAACCCCCAACCCCCCCTCCCCCCCTCCAGAACAACACCTAATATTAACCACGAGTCAGAAACTATGTCACATTCATTTGTTTGTGTCATGTCATTGGAGGCAATGACCTCCAACCTAATACTGATAGGCATCCAAAACTTCTTGGAGCCTTTTTCGTTGTCTTGTCGCAATATCGACCCAGT
Unaligned ( gi|19 ): GGTGAAGTCATTTAAGTTTATTCAAACCATCAGGGCAAAATGACTTCAGTCTACTTTGTCCAGAACTTCTCCTTGCCTATTCTCTCTGCATCAGAGAGGCATCTAGAGTCGTGATCTGTCATATCCTTCCATCTATGGCCATTAAGGCTGAAGTGATCCCCAACAGATTC
Unaligned ( gi|23 ): ATATTGCTCTAATGAACTGGTAATGGTTTAGCCCGTTGTCATCTTGGAAAAGTCATAGAGTTTGTTAATACCTTGATGTTCGAATGACTTCAGCCTATGCATTTAGAATTTCTCCTTTCGTTTTCTTTAAATATCTGACCA
Unaligned ( gi|32 ): AGCAAAGTAATTGAACTATTTTAAACCATCATGGTGAAATTACATCAGCCTGTGAATCTTCTCTTCTTCATCTCTGCAAAAGACTATCTAGACTCGTGAT
Unaligned ( gi|34 ): AGAATAGTGATCAATAACAAACTCATGAATGTCATCCCATTCAGGACCATTGAGGCTGAGACGTTCCATAACTGGTTGTTTTGACGGTGGATCGG
Unaligned ( gi|36 ): TCATTCTATTGAAATTTCTGGTATTTTTCCTGCCATAGGGGCGGAATGATTGCAATATATGCATCGATCAAGGAATGTTAT
Unaligned ( gi|37 ): ATGATGATGCTCAAACAAAGAATAAATGACAAAATCCCCCACAGAACAACACATAGTATTAACTAGGCGAAGCTAGACCAC
Alignments
lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 11 1 1 1111 1 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 1111 11 222 11 666666666666666 222222222 11 1111111111 111 111 11111111 11 22222 1 11 111 1 11111 555555555555 22222 11 3333333333333333333 222 111111 444444444444 111 1111 1111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111 1111 1 1111 222 222 5555555555555555 1 222222222 11 111 222 1111 11 111 11 4444444444444 1 22222 1 11 1 3333 111 33333333 1 2 1111 1 2222 222 2222 1
lowQualScore : 5 1 5 1 1 5 1 5 88 6 3 0 0 1111 1 0 5 9 8 1 1 0 66666666666666666666666666666666666666666666666666666666666666666666666666666666666 6 44 333 7777 00 8 1 8 77 333 1 0 3 77 9 6 7 00 1 1 77 4 1 777777777777777 4 3 22 999999999 1 11 1 1 1 0 2 0 1 2 1 2 33 8 99 66 0 5 1 5 1 1 777 999 1 1 1 1 2 8888888888 5 000 3 11 3 0 33 0 3 1 8 444 44444444 8 11 77777 1 1 1 0 1 6 0 1 1 1 33 0 6 99 5 55 7 000 3 77 3 6 33333 000000000000 77777 1 5 44 77 6 0 7 7 5555555555555555555 222 7 2 5 1 1 999999 333333333333 3 1 44 111 4444 1 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 1 3 6 3 5 77 5555555 0 8 5 1 4444 0 3 2 0 77 9999 2 111 111 1 6666666666666666 5 0 0 0 0 0 1 1 1 555 1 1 222222222 11 666 0 2 0 444 1 333 3 7777 33 8 1 33 1 7777 6 1 77 6 1 1 6 99 0 11 111 3 1 2 0 0 1 11 1 11 1 1111111111111 1 0 00 77 0 1 3 66666 0 00 0 6666 1 777 33333333 1 5 2 1 0 0 7777 7 0 0 3 2222 333 7 1 1 0 1 1 8888 3
lowQualScore : . . . . . . . . .. . . . . .... . . . . . . . . ................................................................................... . .. ... .... .. . . . .. ... . . . .. . . . .. . . .. . . ............... . . .. ......... . .. . . . . . . . . . . .. . .. .. . . . . . . ... ... . . . . . .......... . ... . .. . . .. . . . . ... ........ . .. ..... . . . . . . . . . . .. . . .. . .. . ... . .. . . ..... ............ ..... . . .. .. . . . . ................... ... . . . . . ...... ............ . . .. ... .... . . ............................................................................... . . . . . . . .. ....... . . . . .... . . . . .. .... . ... ... . ................ . . . . . . . . . ... . . ......... .. ... . . . ... . ... . .... .. . . .. . .... . . .. . . . . .. . .. ... . . . . . . .. . .. . ............. . . .. .. . . . ..... . .. . .... . ... ........ . . . . . . .... . . . . .... ... . . . . . . .... .
lowQualScore : 5 0 0 0 0 5 0 0 00 5 2 0 0 8888 0 0 6 0 0 0 7 7 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 88 666 0000 00 2 0 0 77 333 0 7 5 00 3 7 5 88 0 0 77 9 0 111111111111111 6 2 44 222222222 0 00 0 0 0 7 2 7 0 2 0 3 44 7 33 99 2 0 0 0 0 0 111 444 0 0 0 0 8 9999999999 0 000 0 77 0 4 44 3 8 0 8 000 22222222 0 00 66666 4 4 0 6 4 0 8 4 4 0 22 2 7 22 7 77 5 222 2 77 3 7 33333 666666666666 11111 0 7 44 99 6 7 3 3 0000000000000000000 000 1 3 6 4 0 222222 222222222222 7 0 22 777 2222 6 3 2222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 0 5 7 7 6 88 2222222 8 0 0 4 6666 8 8 8 2 33 0000 5 555 000 0 5555555555555555 0 7 7 7 7 7 0 0 0 222 0 2 000000000 22 555 2 5 2 000 0 222 2 0000 55 0 4 88 0 9999 0 7 99 6 0 7 7 22 7 00 888 8 4 8 4 8 0 44 0 00 0 8888888888888 2 2 55 22 0 0 2 55555 0 88 0 8888 0 555 22222222 0 5 5 0 8 0 3333 3 7 7 3 7777 333 3 0 0 7 0 0 3333 3
consensus : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCGAGGNGTAAAGTCTGGTGGGGCTTAGCNCANGTTCATTCTAGCAAANTCATTCGATTTTATTCAATTGCCATTTTCTCCTTGTTTT-TTC-TTTCCAGNGTCGNTCCA-GTTAGGGTTATG-GTCAATAACCACNACCGTCATGTCTTCCCAT----------CGG----------GATCG--AGGTGTT--CC-----------------G--------T--TTG---------GTCCTAAT-GGTGGACC----GGTGGTTGTTGATTCTTCTACGGAGGTCACCT-GTTTCACCTACGTACTGC-TTTTGG---CANACCTTACAACCGATAAGGTAGACGCAGTTGTCCGTGCGACA-GGACGTNGCT-CCCAANATTTTGTAGCTNCG-NCCTGTGACAGGGCTGCTGAAANTGTCAG----T----G-C---GCTGCGTTTGCACATNAGGCATC--T--NA--TCNGA--ACANGTNTTGAAACCNCCGTTGGGTAATGGGTTATCCAGCCTAGTTCTAACTACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATNG-GNGGNTCTTTG--AAGACCCTAGCCATTCNTTNGTTGNTGTGNAGAATGGGNAAATG-----NCT-TCT-CAGGATGNTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCG-CCT-TC--TTCTCTC-GNTTATATTGAAGNAGGGATTCTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGNTTGCACT-TGGG-G--GCTTTG-TAGCCTCTCTTGCACAGGTGNTTTTTC--GATGG-NTGCT-TTGTTC-TT-A---TAA----GNAA---CAGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCCTTAGGTACTCCTTTGAAGGTATGAGGT-GG-TGACAA-C-T-GATGGCATGGNATATATAAATGTGAGTCAGCGGGTTTNGTGTGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANCGTG---GAAGTG----GTATCCAAGAATACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----ATAAAGTTNTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAA-GG-CGATTGTCTGAGT-AAGTTGCGTTCAAATCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCACTNACTTGTAAGTAATGTTCGCCGTTGAACGCGAAGTTATTGAGTTTGAGGACATNA--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTGTCAGGGCCCTGCTATCCCAANCCTCTCTGCAGGCTTCAATGCCTTCCATCGTGGGGGATGTTCGTGTAAAGCGAAGTCGTATCCATGGTCGCGAGGNGAATATNGTCNGGCAGGTTNNAANAAAGGT--TTTTG--TTA-AGGTAACCAGTNGTGTCCTTCAGGTATGACGGTAG---CTTNACAACGTGCGGACG----GAGATGTAGGTCAATGAATT-CTGAGATTTTCTCCGTGGGGTGTCCGATGGCACTCACTATGGGACGGCCAGGCATGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GGTCTA--CAGTCGAG--AGGCAGCAATGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTNTCGNTGATNGTGGCAGAAAACGTT--TTNGTGGGGTCGGAGTCCAG-T-------TNTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCCGCTACGTATG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CCG---TTNTTTT---AGC--CT---NAAGGNCAGCTCTCTCTTCTTTGCTNAGATTGTCC-GGAATA-TT-CTGTTTCGTCGAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTNGATGTAGGACTCGANGGCCGCACATTTTNCTANTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAG-AGTTT
Reference ( family-3283 ) : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCGAGGNGTAAAGTCTGGTGGGGCTTAGCNCANGTTCATTCTAGCAAANTCATTCGATTTTATTCAATTGCCATTTTCTCCTTGTTTT-TTC-TTTCNAGNGTCGNTCCA-GTTAGGGTTATG-GTCAATAACCACNACCGTCATGTCCTCCCA-----------CGG----------GNTCG--A--TGNT--CC-----------------G--------T--TTG---------GTCCTAAT-AGTGGACC----GGTGGTTGTTGATTCTTCTACGGAGGTCACCT-GTTTCACCTACGTACTGC-TTTTGG---CANACCTTACAACCGATAAGGTAGACGCAGTTGTCCGTGCGACA-GGACGTNGCT-CCCAANATTTTGTAGCTNCG-NCCTGTGACAGGACTGCTGAAANTGTCAG----T----GTC---GCTGCGTTTGCACATNAGGCATC--T--CA--TCNGA--ACANGTNTTGAAACCNCCGTTGGGTAATGGGTTGTCCAGCCTAGTCCTNACCACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATNG-GNGGNTCTTTG--AAGACCCTAGCCATTCNTTNGTTGNTGTGNAGAATGGGNAAATG-----NCT-TCT-CAGGATGNTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCG-CCT-TC--TTCTCTCCGNTTATATTGAAGNAGGGATTCTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGNTTGCACT-TGGG-G--GCTTTG-TAGCCTCTCTTGCACAGGTGNTTTTTC--GATGG-NTGCT-TTGTTC-TT-A---TAA---CGNAA---CAGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCCTTAGGTACTCCTTTGAAGGTATGAGGT-GG-TGACAA-C-T-GATGGCATGGNATATATAAATGTGAGTCAGCGGGTTTNGTGTGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANCGTG---GAAGTG----GTATCCAAGAATACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----ATAAAGTTNTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAA-GG-CGATTGTCTGAGT-AAGTTGCGTTCAAATCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCACTGACTTGTAAGTAATGTTCGCCGTTGAACGCGAAGTTATTGAGTTTGAGGACATNA--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTGTCAGGGCCCTGCTATCCCAANCCTCTCTGCAGGCTTCAATGCCTTCCATCGTGGGGGATGTTCGTGTAAAGCGAAGTCGTATCCATGGTCGCGAGGNGAATATNGTCNGGCAGGTTNNAANAAAGGT--TTTTG--TTA-AGGTAACCAGTNGTGTCCTTCAGGTATGACGGTAG---CTTNACAACGTGCGGACG----GAGATGTAGGTCAATGAATT-CTGAGATTTTCTCCGTGGGGTGTCCGATGGCACTNACTATGGGACGGCCAGGCATGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GGTCTA--CAGTCGAG--AGGCAGCAATGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTNTCGNTGATNGTGGCAGAAAACGTT--TTNGTGGGGTCGGAGTCCAG-T-------TNTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCCGCTATGTATG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CCG---TTNTTTT---AGC--CT---TAAGGNCAGCTCTCTCTTCTTTGCTNAGATTGTCC-GGAATA-TT-CTGTTTCGTCGAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTNGATGTAGGACTCGANGGCCGCACATTTTNCTANTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAG-AGTTT
gi|1 : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCAAGGTGTAAAGTCTGGTGGGGCTTAGCTCAAGTTCATTCTAGCAAATTCATT-GATTTTATT--ATTGCCAATTTCTCTTTGTTTTATTC-TTTC-AGAGTCACTCCA-GTTAGGGTTGTG-GTCAATAACTACGACCGTCATGTCCTCTTA-----------CGG----------GTTCG--G--TGAT--TC-----------------G--------T--TTG---------GTCTTTAT-AATATACC----GGTGTTTGTTGACTCTTCTTCGGAGGTCACCT-GTTTCACATACCTACTGC-TTTTGG---CATTTCTTACAACTGATAAGGTAGGTGCAGTTGTCAGTGCGGCA-GGACGAAGCT-CCCAAAATTTAGTAGCTCTG-TCCTGTCACCGGACTGCTGAAAGTGTCAG----TTG--GCCC--GCTGAATTTGCACATGAGGCATCACT--TA--TCAGA--ACACGTGATGAAACCCCAGTTGGGTAATGGGTTATACAGCCTAGTTCTAACTACAATGTCCTTTATATTTCAAGGT-TG--TCTGAAGGCCG-CCATTG-GAGGGTCTTTA--AAGATCCTAGCCATTCGTTTGTTGTTATGCAGAATGGGCAAATG-----GCT-TTT-AAAGATGGTATTGAGGTTCTTCAGGGCGTGATGAAATGTAGTAACTAAATGGA---CT-CTATTG-CCT-TC--TTCTCTCCGGTTATATAGAAGCAGAGAGTTTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGCTTGTACT-CGAACA--GCTTTA-TAGCCTCTTTTACATAGGTGGCTTTTC--AAGAGTCTGCT-TTGTTT-TT-C---TAATTCCGAAC---CAGA--G--GAACAGATACGACGAA-CTCGT-GTAGCTAA--AACCTTAGGTACTCCTTTGAAGGTATGAGATGGG-TGACAG-CTT-GAAGGCAT--CATGTATAAATGTGAGTCAGCGGGCTTTGTGTGGAGGTTG------AATTC---------A--ATTTTATCATTCAAGAGAGTG---GAAGTG----ATATCCAAGAATATGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGGTGAAATGAGT---TGG-------------------TAAAGTTTTCAAGCCTATCTCG-GCCCTCCTTCCATTTCATTTCAATGTCATCAATGAAACACAACCAACTATGGGGTTTAAAGGG-CGATTGTCTGAGT-AAGTTGTGTTCCAATCTTCCCATGAAAATGTTGGGATACGAATGAGCCATTTTCGTTCCCATAGCTGTGCCACTAACTTGTAAGTAATGTTCGCCGTTGAACACGAAGTTATTGAGTTTGAGGACATAA--TCAAGGAGCTTGACCAATTATTCTGTGGAAGGA---TGTGTCAGAACCCTGCTATCCCAAACCTC----------------CCTT-CATCGTGGGAGATGTTTGTGTGAAGCAAAGTCATATCCATGGTTGCGAGAAGGATATTATCAGGTAGGTTGGAAGAGAGGG--TTTTG--TTA-AGGTAATCAGTGGTGTCCTTCAAGGATGATGGTAG---TTTAACA---TGTAGGCG----GAGGTGTAGGTCAATAAATT-CTGAGATTTTCTCCTTGGGGTATCCAATTGCACTCACTATAGGGCGGCCAGGCATACCTTCTTT--GTGGATTTTAGGCGGTAAATAAAATTGTCCA-GGTCTA--CAGTTGAG--AGGCATCAATGTTTCAAAGACAT--TATTACCAATTTTCTCGTCTTTGTACATTTGCTCAAGAGTGTCGTTGATTGTGGCAGAAAACGTT--TTGGTGGGGTCGGAGTCCAG-TTTAGCAGTTTAGTGTAAAACCGTTCATCCGGGACATGTCTGTGCGCTTCCGCTGTGTATA-TTATCTTGTCTAATACCACCAATGTTGACCCTCTGTCTGCTTTTTTTTT-TTATAACAATGTCATC-CCGT--TTGTTTT---AGCT-CT---TAAGGCTAAC-CTCTCTTATTTGCTTAACTTGTCCGGGAATATTT-CTGTTTTGTTGAG-TAG--T-TTTTCAATGTC---CTGCTCAACTAATTCGATGTAGGGCTCGATGGCTGCACATGTTCCTATTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAGTAGTTT
gi|10 : ACTGC-TTCTGATGACAAACTTTGCAACCGAGGAGATAAACAAAGTTATT-----------GAAGTCGC---CTAATATTCTGTAACTACG-GTCTGTGATAGGACTGCTGAAGGTCTCAGGGGGT----AGA---GTTGTATTTGCA--TAAGATATC--T--GA--GATGATGATAGATCTTAAATCCTCCAATCGGTAATAGGTTGTCCAGTCTAGTCCTCACCAATATGTCCTTTATGTTCCT-GGTGCA--CCTAAGGGCAGTCCGTAG-GTGGACCTTT------------GTCATTCGTTGGTTCTTGTGTAGAATAG--AAATG-----A-------CAGGATGGT----AAG----------------------TGGTGACTAAG-GGA---CC--------CCT-GC--TTCTCTC----TACATTGTAAAATAGATCGTCTGTCTTGTTC-GGTTAACTCATCAACTG
gi|11 : CCTGTGATAGGACTGTTCAAACTTTCAG----T----GTCTGAGCTACATTCGCACAATTGATGTC--T--GAGGTCTGA--GCATATGTTGAAACCTCCATTAGGTAAAGAATTATCCAGTCTATCCCTAACATCCATGTCCTTTAGGTTTCTAGG--CG--TCTGGAGGACG-GCATAG-GGGACTCATTG--AAAACATCAGCCTTTCATTTATTGGGATGCAGAATGGGCAGATA-----CCG-TCT-CGAG-------------TCTTGAGGGCGGGATGGTATGTAATagg
gi|12 : AA---GAGA--GA-GAGCA--TGTGACAAAACTCTT-GTGCCTAC--ACCTTTAGGTACTCTTATAAAGGTATAAAGT-GG-------------ATAGCATAAGATACA-GAATA-GAATCCACAGACTTTGTATGGAGGCTGCATCAGAATTCTTGCATAATG--ATTTCATCATTtttgaggtaaatgacttttgaggatctttccttgtttt
gi|13 : aaaacatccttttaacagatagctttgcttttaaatactctactctgttttggaatgctgtgggagATGATGGTAG---CTTCATAGCATATGGACATGCAGAGATGTAGGTCAATCAATT-CTGAGATTTGCTCCGTGGGGTGCCCAATGGCACACACTATGGG-TGACCAGGCACACCCTCCTT--GTGGATTTTAGGCAGTAGATAGAATTGCCCA-GGTATATACAGTTGAG--AGGAAGCAATGTTTCAAAGACAT--TTTCACCAATTTCCTCGTCTTTGT-----------AGAGTTTCACTGATGGTGGCAGAAAACGCT--TTattgagattaacaaaattgggaacattttcaag
gi|14 : aaaA--CAGTTGAG--AGGCAGCAATGTTTCAAAGACA-------ACCAATTTTGTCATCTTTGTACATCTGCTTAAGAGTGTCGGTGATTGTGGCAGAAAACGTT--TTGGTAGGGTCGGAATCCAG-T-------T-TAGTGTAAAACCGTTCATCCGAGAGTTGTCTATGCGCTTCCTCTA--TATG-TTGTCTTGTCTAATACCACCACTGTTAACg
gi|15 : TAGTATGGAGGCTG------AATTTT--------A--ATTTCACCATTCCAGAATGTG---GAAGTG----GTATCCGAGAATACGTTCTTGGAGCTAGAAATTTC---------CA---------CTGTAAATTTTATG--GAA---TGATGAAATGAGT---TAG-TTAAGGA----A-----ATAAAGTTTTCAAGTTTATCTCG-GCCCTCCGTCCATTTCATCTCAATGGCATCAATGAAATGCAACTAACTATGGGGaatgtcatactggttttatcaaaatgtc
gi|17 : acaagtgtgaataGTG---GAAGTG----GTATCCAAGAATACGTTCATGGAGCTGGAAATTTC---------C--------------------------------------AATG----------------------------TAA---TCT---GTCTATTTTC-GCCCTCCGTCCATTTCACCTCAATG---------AAACGCAACCAATTATGGGGTTTAAA-GG-AAGTTGTCTGAGC-AAGTT-----------TTCCAATGAAAATGCGGGGATACGATGGAGTCATCTTCGTTCCCATAGCTATGCCACTTACTTGTAAGTAATGTTC
gi|18 : aTCATGTTTCT--GT-TGCCTCTGAAGGATG-TCATAGTGGGGGTCTTTG--AAAACATAAGACGTTCATTTGTCGGCCTACTGAATGGGTAGACA-----TTT-TCT-CAGAATGCATTTGAAATACTTGAGGGCGGGATGGTAAGCAGT
gi|2 : atcagtattgaATTGTATGAGG-ATGTTGCGTTCAAGTCTTCCCATGAAAATGTTGGCATACGATGGAGCCATCTTTGTTCCCATAGCTGTGCCACT----TGTAAGTAATGTTCTCCGTTGAACATGAAGTTGTTGAGTTTGATGATATGT--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTG---GGGCCTTGTTATTCCAACCCTCTCTGCAGGCTTCAATGCCTTCCATCATAGGGGATGTTCTTATAAAGTGAAGTCACATCCCTGGTCACAAGAAGAATATTGTCAGGTAGGTTGGAAGAAGGGT--TTTTG--TTA-TGGTAGCTAGTA-----------GTATGATGGTAG---CTTTACAACATGTGGTCG----GAGATGT---CCAATGAttgtcattttgaggttttctctgtattgtttga
gi|2 : GAGATGTCCAATGACACC----ATGGGACGGCCAGGCATACACTCT------G---TTTAGGGGGTAGATAAAATTGTCCA-GATCTA--CAGTTGAG--AGAAAGCAGTGATACAAAGACAT--TGTCACCAAGTTCCTTGTCTTTGTACATCTGCTTAAGAGTTTTTGTGATGGTGGCAAAAAACGTT--TTCGTAGGGTTGGAGTCCAG-T-------TA-AGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGTGCTTCTACCATGTATG-TTTCCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTTGTTA--ACAATGTCATC-CTG---GTCTTTT---AGC--TTTTGTAAGACTGAC-CT---TTCTTTCCTTAGATTGTCCTGGAACC-TTGCTGTTTTGTCAAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTGGATGTAGGACTCGAGGGCTGCACATTTTACTGATGGAGGTTCCAATTTGCTCTTAGTTC----GGTAG-AGTTTcaccatgggacggccaggcatacactctgtttagggggtagataaaattgtccagatctacagttgagagaaagcagtgatacaaagacattgtcaccaagttccttgtctttgtacatctgcttaagagtttttgtgatggtggcaaaaaacgttttcgtagggttggagtccagttaagtgtaaaaccgttcatccgagagttgtctgtgtgcttctaccatgtatgtttccttgtctaataccaccactgttgaccctttgtctgcctttttgttaacaatgtcatcctggtcttttagcttttgtaagactgacctttctttccttagattgtcctggaaccttgctgttttgtcaagtagtttttcgatgtcctgctcaactgcttggatgtaggactcgagggctgcacattttactgatggaggttccaatttgctcttagttcggtagagttt
gi|20 : attgtatgaggatgttgcgttcaagtcttcccatgaaaatgttggcatacgatggagccatctttgttcccatagctgtgccacttgtaagtaatgttctccgttgaacatgaagttgttgagtttgatgatatgttcaaggagcttgaccaacgattctgtggaaggaatttgtggggccttgttattccaaccctctctgcaggcttcaatgccttccatcataggggatgttcttataaagtgaagtcacatccctggtcacaagaagaatattgtcaggtaggttggaagaagggtttttgttatggtagctagtagtatgatggtagctttacaacatgtggtcg-G--GCTTGG-TTGCCTCTCTTGCAC--GTTTTTTTTT--GATGG-ATGCTCTTGTTC-TT-A---TA-----GAAAGTGCAGA--GTAGAGCAGATATGGCGTA-CTTG--GTGGCTAA--ACCTTTAGGTA-----TTG--GGTA-GA-----A-TGGCAA-C-TAGATGGCATGGAAT-TATAAA
gi|21 : a-G--GCTTGG-TTGCCTCTCTTGCAC--GTTTTTTTTT--GATGG-ATGCTCTTGTTC-TT-A---TA-----GAAAGTGCAGA--GTAGAGCAGATATGGCGTA-CTTG--GTGGCTAA--ACCTTTAGGTA-----TTG--GGTA-GA-----A-TGGCAA-C-TAGATGGCATGGAAT-TATAAAatacatcacgaggcagccgagt
gi|22 : aTAAT-GGTAGACC----GGTGGTTATAGATCTTTCAACATAGATACCCTAGTTTCACCTACGTAGCG----TTGGTCACAAACTTTGCAACTTTTAAGATAGATACAGTCGTCCGTGCGACA-GGATGTGTCC-TCAAGGA--TTATAATATAA-GCCAGTGGCAGGGCTatacatcacgaggcagccgagt
gi|24 : tctttTTTTTCCT-GTCTT-TTC-CTCTCTGCATCGGTCCATGTT-GGGTTATA-ATCGATAATCACCACCTGCATATCct
gi|25 : atgcgcacgaaatcattcagtttgttcattccatctgggcggaatgatttcaagcgatgcatctatgaACATATAGATGGCAGTTAGCAGTTTTGGCGTGGAGCCTG------AACTC---------G--ATATTTCCGTTAACGACCTTA---GACGTG----CTGTCTAGAAAGACGATAGTGGATGTGGAAATt
gi|27 : aggaggatggcgggattagatatAGGCGAATTTGGTGTTGCAGGT-CCAATAAATGTAATTTTAATTTA-GGGTAACCATTCGGGTCCTTAAGGTGTGACGGTAAATCCTTTACA---TGCTGACG----GGG
gi|28 : tgaaagttcaataattatcCTTTA-TAGCCTCTCTTGCACACATGGTTTTTC---ATGG-TAATT-TTGTTC-TTGA---TAA---AGTGC---AAGATTG--AAACAGATGCGATGGA-TTCGA-AGGGCTAAGTACTCTCAGGTATTCCTTTg
gi|29 : TGGGATGTCCTGTAGCAATGACTATTGGACTTCCATGCATGTTTTTTTTTTATGAATTTTAGGAATTAAGT-AAATTTTCCT-GATCTA--CAGTCG
gi|3 : TGAAACCCCCGATAGGTAGTGGGTTATCCAGCCTAGTTCTGACTACAATGTTCTTTAAATTTCTAGGT-TG--TCTGAAGGCCT-CCATTG-CAGGGTCTTTA--AAGACCCTAGCTATTCTTTCGTTGTTATATAGAATAGGTAAATG-----GCT-TTT-AAGGATGGTATTGAAGTTCTTCAGTGCGGGGTAAAATGTAGTCACTAAGGGGA---CT-CTATTG-CCT-TC--TTCTTTCTGTTTATATAGAAGCAGGGAGTTTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGGTTGTAC--TGGA-GCAGCTCTA-AAGCCTCTTTTACATAGGTGACTTTTCAGGA-GT-TTGCT-TTGTTT-TG-AGTTTAATTTCGTGA---CAGA--G--GAACAGATACGACAAA-CTTGT-GTTGCTAA--ACCCTTAGGTACTCCTTTGAAGATATGAGGTGGG-TAACAGCC-T-GAAGGCAT--CACATACCAGTGTGAGTCAGTGGGTTTTGTGCGGTGGCTG------AATTC---------A--ATTTCACCGTTCATGAGAGTGATCGAAGTGGTAAGTATCCAAGAATACGTTCTTGGAGCTTGAAATTTC---------CT---------T-----------TG--TAAATTTAATGAAATGAGGAAATGG-T-----A----AAGGAGATAAAATTTTCAAGTCCATCTCG-GCCCTCCTTTCTTTTCAACTCAATGTCATCTTTGAAACCCAACCAACTATGAAGTTTAAA-GGCCGATTGTCTGAGTAAAGTTGCATTCAACTGTTCCCATGAAAATGTAGGCATACTATGGAGCCAttggaacaaagcacttc
gi|30 : TCAATAACCACCACCGTCATGTCTTCCCA-----------TG
gi|31 : ACGTTTTTCAGATTTCCTGGG-CG--TCTGAAAGCCA-CCATGG-ATGGTTCTTTG--AAGACCATGGCCATTCTAGAGGTAATGTGAAGAGTGGGAAAATG------CT-TCT-catatgagtgtccctcgagatgaaaatgctcggcgacgggttcttggacccttttggttcttatggtagaccgatga
gi|33 : ttcagGTTAATGAATTTCTGGGATTTTTTCCGTGGGGTGTCCG-------TCA------GACACCCTGACATGGCTGTTTT--GTGTATTTCGGGTAGCAAATAAAATTGTTCA-tc
gi|35 : TTGTCTGC-----TTTT-TTATGACTATGTCGTCACCGGTTTTTTTTT---AGCAATT---GGAGGACAGCTCTCTCTTCTTTGCTGAGATTGTCT-Gcttc
gi|38 : ACAATGGGGCGGCCAGGAATATTCTGTTT--GTGTATTTTAGGAAGCATGTAAAATa
gi|39 : ctactgcagatTCAATAATCACTACTGTCATGTCTTTCCA-----------
gi|4 : aAGAATTATG-GTCAATTACCACTACTGTCATATCCTCCCAT----------CTGTGACCATTAAGATTG--AGGTGTTCCCC-----------------GACGGGCTCT--TTGGTTCTTTTTGTCCTAAT-GGTGGATC----GGTGGTTGTTTATTCTTTGGCGGATGTCACCC-GTTTCTCCAACATATTGC-TTTGAG---CAAACCTTACAATTG---AGATACACACAGTTGTCTGTGTGACA-GGACAT-GTTACCCAATATTTTGTAGATGCG-ACCAGTAAC-GGGCTAGTAAATTTGTCAG----T----------GCTGTGCTTACACAAAAGGCATC--TGGCA--TCGGA--ACAAGTTTTAAAACCACCATTGGGTAATGGGTTGTCTAATTTCGCTCTCACTACCATGTCCTT----TTCCTAGGC-CG--TCTAAATGCAG-CCATTG-GTGGATCCTTGAAAAGATCC--GTCATTCTTTTATTATTGTGAAGAATATGTACATGTAGATTCTCTCT-CAGGATGCTGTTAAAGTTCTTAAGGACGGGGTGAAATGTTGTGAC-ATGTGGAACCCTACTATTGTCTT-TC--TTCTC----ATTGTATTGAAAAAGGGTTTCCCTGTT-CTTTGTGGTTATCTCATCAATTGCGGATTGCACTGTGTG-G--GCTTTG-TAGCCTCGATTACACAGATGtttgttgaatgcaaaattaaaatgctcggtgac
gi|40 : gCAGGTTTTAAAGCCATCATTGGGTAAAGGATTTTCCTACTTGGTTCGAACCACCATGTCTT
gi|5 : G--TCTGAAGGCTG-TCATGT-GTCGTTCTTTG--AAGATCATGGCCATTCTAGGGGTAATGTGAAGAGGGGGGAAAT------ACT-TCTTCAGAATTTTGTTCAAATCTTTTAAGACAGGGTGGTACGTAGTGACCACTGGGA---CT-ATGTCA-CCTATCGATTCGT---GTTTGTATTGTAGTAGGGATTCTCTGTCGTGTTCT-GACATCTCATCAACAGCTGCTTGCACT-TTGG-G--GGTTTGATAACCTCTCTTGCACAGATG--TTTTA--GATGG-GTGCT-CTGTTCTTT-A---TGA---AGT-G---CAGAGTG--GAGCAGGTACGACGGA--TTGTGGTGGCTAC--ACCTTTAGGTACTACTTTGAATGTATCAGTA-GGATGACAA-C-T--ATG-------AGATACAAATTTGAGTCAGTCGGTTTGGTATGGAGACTG------ATTTC---------AACATTT--CCGTTAAAAATCTTG---TTAACA----G-A---AAAAAGACGTTACTGGATGTGGAAATATCAACAGTTAACA---------TGA---------TC--AAA---TTATGGAATGAGT---TGGCT-----AGTTTA-----ATAAAGATGTCAAGATT-TCTCATACTTTTTACCCACTTCGTCGCAAT
gi|6 : AATT-CAGATAATCTCTCCGTGGGATGTCTGATGGCACTGACAATGAGTCGACCAGGCACGCCTTCTTT--GTGAATTTTAGGGAGAAAATAAAACTG-CCATGGTCTG--CAGTC-AGCCGGACAG-AGTGCTTCGTAAACGTAGTCTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTCCTCTGTGGGGTCTGAATTCAGCT-------TCT--TGTAATACTGCTCATCAGATAGCTGCCTGTTGGCTTCAGCTACATACGATTCTCT-GTCTAGAACAACTACTGTAGACCCTTTGTCTG----CTTTCT-TTACGACAATATCGTC-ACG----GGTTTTGAGAGA--CT---GAAGGGCAGCTCTCTCTTCCTTGTTGAAGTTATCC-GAAATA-TA-TGG--TCGTTGAGACAGGATATCTTCGATATTAGACTGC---ACTGCGTAGATATAAGATTCCAAGGCCCCACATTTTTCAAGTGGAGGTTCCCAGGGATTCTTAGGCTTACAAGTAG-AGTTTcaacttacagacc
gi|7 : CCAACAAAATATTCTTGAAGTTGGAAATTTC---------CACCGTGAACCT-----------TGTAGAA---TAATGGAAAGAGT---TTG-C-----A----GTCATGATAAAGTCATAGAGGCTTTCGCG-ACTTTCAAACCACTTCATTTCAATGTTATATGTGAAATGTAGCCAACTACGAGGTTTA-------GATAG--TGAAT-GA-TTCCATT---ATCTT--TATAAAA-------CCCAAAATGGTGTAATTTTTGTTCTCATAGTTGTGCCACTGATTTACAGATAATATGAGTCCAAGAA-GCTAAGTGATTCAGTTGAAGAACATTACCTCAAG
gi|7 : ATGTATGTGTAAAGTGAAATAGTATCCATGGTCACAAGGCGAGTATGGTCTGGCGGGGTTTAATATAGGT-----------ACATGTAATCAGATGTGTTCTTCAGGTATGACGGTAA---ATCGTCTATGTGCTGACG----GAGATGCAAGTCATTGAATT-CAGATATTTTATCTTTGGGGTGTCtgtaatgtatgtgtaaagtgaaatagtatccatggtcacaaggcgagtatggtctggcggggtttaatataggtacatgtaatcagatgtgttcttcaggtatgacggtaaatcgtctatgtgctgacggagatgcaagtcattgaattcagatattttatctttggggtgtc
gi|8 : ccaacaaaatattcttgaagttggaaatttccaccgtgaaccttgtagaataatggaaagagtttgcagtcatgataaagtcatagaggctttcgcgactttcaaaccacttcatttcaatgttatatgtgaaatgtagccaactacgaggtttagatagtgaatgattccattatctttataaaacccaaaatggtgtaatttttgttctcatagttgtgccactgatttacagataatatgagtccaagaagctaagtgattcagttgaagaacattacctcaagtgtaCAATGAAATTTAC-ACGAGTATAGGTTGTGAAGAGAGGCGAGGAGTAAAGTCTGGT-GGGCTTAACATACGTTCATTCT-GCAAAGTCATTCGATTTTATTCAATTGCCATTTT
gi|8 : ATTTTCTC-TTGTTTT-TTCGTTTCAAGAGTCACTCCA-GTTAGGGTT-TGCGTCAA-AACTACGACTGTCCT-TCTTCCCATTTGTAACCCTCTA----------GGTTGAAA--TGTT--CCCAACGGTTCGGTGATCCG--------T--TTG---------GTCTTAATAAGTGA--C----GGTGATTGTTGACTCTTCT-CGGA-GTCACCT-GTTTCACCTACGTACTGCTTTTTGG---CATTTCTTACAACCGATAAGGTAGAT-CAG-TG-CAGTACGGCAGGGACATAGCT-CCCAAAATTTTGTAGCTCTGTTCCTGTCACCGGGCTGCTGAAAGTGTCAG----T----gaggccgaaatgactttaaatctgtgcatcagaattttctcttgttttttcgtttcaagagtcactccagttagggtttgcgtcaaaactacgactgtccttcttcccatttgtaaccctctaggttgaaatgttcccaacggttcggtgatccgtttggtcttaataagtgacggtgattgttgactcttctcggagtcacctgtttcacctacgtactgctttttggcatttcttacaaccgataaggtagatcagtgcagtacggcagggacatagctcccaaaattttgtagctctgttcctgtcaccgggctgctgaaagtgtcagt
gi|9 : caatgaaatttacacgagtataggttgtgaagagaggcgaggagtaaagtctggtgggcttaacatacgttcattctgcaaagtcattcgattttattcaattgccattttgaggccgaaatgactttaaatctgtgcatcagaTCTCCTTATTTT-TTC-TTTCCA-TATTGGTCCA-GTGCACGTTTTG-GTCAATAGCCACTACTGTCATGTTTTCCCATTCATGTCCTGCGA----------GATCG--AAATGCT--CT-----------------G--------CAACTG---------ATTCT--T---TCAACCATTTGGTAGTTATTGATCCTCCTACGTAAGTCTCCT-GTTTCATCTACGTATTGT-TGATCA---CAGAGCTTACAGTTTATGTTGGAAATGCAATTATCCGTGCGACA-GGCTGTTTCC-CCCAGAATTCAGTAGTGTCA-ACTTGTGACAGGACTCTTAAAACTGTTAC----TTCTAG-C---GCTGTGTTTGCATATCGGGCATC--TACCA--TCAGA--ACATG
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TGGTGATAGACTCGCAGACAAAAAAATGAACGGCAACCCCCAACCCCCCCTCCCCCCCTCCAGAACAACACCTAATATTAACCACGAGTCAGAAACTATGTCACATTCATTTGTTTGTGTCATGTCATTGGAGGCAATGACCTCCAACCTAATACTGATAGGCATCCAAAACTTCTTGGAGCCTTTTTCGTTGTCTTGTCGCAATATCGACCCAGT
Unaligned ( gi|19 ): GGTGAAGTCATTTAAGTTTATTCAAACCATCAGGGCAAAATGACTTCAGTCTACTTTGTCCAGAACTTCTCCTTGCCTATTCTCTCTGCATCAGAGAGGCATCTAGAGTCGTGATCTGTCATATCCTTCCATCTATGGCCATTAAGGCTGAAGTGATCCCCAACAGATTC
Unaligned ( gi|23 ): ATATTGCTCTAATGAACTGGTAATGGTTTAGCCCGTTGTCATCTTGGAAAAGTCATAGAGTTTGTTAATACCTTGATGTTCGAATGACTTCAGCCTATGCATTTAGAATTTCTCCTTTCGTTTTCTTTAAATATCTGACCA
Unaligned ( gi|26 ): GACTAGGACTGTCGATGAGATTCTCGGTGCTAGAGTTGTGTTTGCGTGATTCTAGACATCCTGATATCAGTATGTTAAAACTGCCTCCATTTAAGCATTAAATTGTTAAGTCTAGTCTTCATCA
Unaligned ( gi|32 ): AGCAAAGTAATTGAACTATTTTAAACCATCATGGTGAAATTACATCAGCCTGTGAATCTTCTCTTCTTCATCTCTGCAAAAGACTATCTAGACTCGTGAT
Unaligned ( gi|34 ): AGAATAGTGATCAATAACAAACTCATGAATGTCATCCCATTCAGGACCATTGAGGCTGAGACGTTCCATAACTGGTTGTTTTGACGGTGGATCGG
Unaligned ( gi|36 ): TCATTCTATTGAAATTTCTGGTATTTTTCCTGCCATAGGGGCGGAATGATTGCAATATATGCATCGATCAAGGAATGTTAT
Unaligned ( gi|37 ): ATGATGATGCTCAAACAAAGAATAAATGACAAAATCCCCCACAGAACAACACATAGTATTAACTAGGCGAAGCTAGACCAC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 11 1 1 1 11111 1111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 1111 11 222 11 666666666666666666 11 222222 11 1111111111 111 111 11111111 222222 1 11 111 1 11111 555555555555 22 11 3333333333333333333 222 111111 444444444444 111 1111 1111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111 1111 1 1111 222 222 5555555555555555 1 222222222 11 111 222 1111 11 11 111 11 4444444444444 11 1 22222 1 11 1 3333 111 33333333 1 2 1111 1 2222 222 2222 1
lowQualScore : 5 1 5 1 1 5 1 5 88 6 3 0 0 6 33 1 0 5 9 6 22222 1 3 5 2222 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 00 4444 00 8 1 8 77 333 1 0 3 77 9 6 7 00 1 77 1 77 4 1 666666666666666666 4 3 22 11 555555 1 11 1 1 1 0 0 1 0 1 2 33 8 99 66 0 5 1 5 1 1 777 999 1 1 1 1 2 8888888888 5 000 3 11 3 0 33 0 3 1 8 444 44444444 8 888888 1 1 1 0 1 6 0 1 1 1 33 0 6 99 5 55 7 000 3 77 3 6 33333 444444444444 77 11 1 5 44 77 6 0 7 7 5555555555555555555 222 7 2 5 1 1 999999 333333333333 3 1 44 111 4444 1 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 1 3 6 3 5 77 5555555 0 8 5 1 4444 0 3 0 0 77 9999 2 111 111 1 6666666666666666 5 0 0 0 0 0 1 1 1 555 1 1 222222222 11 666 0 2 0 444 1 333 3 7777 33 8 1 33 1 7777 6 1 77 6 1 1 6 11 0 11 111 3 1 2 0 0 1 11 1 11 1 1111111111111 1 0 00 00 0 1 3 66666 0 00 0 6666 1 777 11111111 1 5 2 1 0 0 7777 7 0 0 3 2222 333 7 1 1 0 1 1 8888 3
lowQualScore : . . . . . . . . .. . . . . . .. . . . . . ..... . . . .... ................................................................................................ . .. .... .. . . . .. ... . . . .. . . . .. . .. . .. . . .................. . . .. .. ...... . .. . . . . . . . . . .. . .. .. . . . . . . ... ... . . . . . .......... . ... . .. . . .. . . . . ... ........ . ...... . . . . . . . . . . .. . . .. . .. . ... . .. . . ..... ............ .. .. . . .. .. . . . . ................... ... . . . . . ...... ............ . . .. ... .... . . ............................................................................... . . . . . . . .. ....... . . . . .... . . . . .. .... . ... ... . ................ . . . . . . . . . ... . . ......... .. ... . . . ... . ... . .... .. . . .. . .... . . .. . . . . .. . .. ... . . . . . . .. . .. . ............. . . .. .. . . . ..... . .. . .... . ... ........ . . . . . . .... . . . . .... ... . . . . . . .... .
lowQualScore : 5 0 0 0 0 5 0 0 00 5 2 0 0 5 55 0 0 6 0 7 55555 0 4 0 1111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 33 2222 00 2 0 0 77 333 0 7 5 00 3 7 5 88 0 88 0 77 9 0 999999999999999999 6 2 44 00 000000 0 00 0 0 0 7 3 5 3 0 3 44 7 33 99 2 0 0 0 0 0 111 444 0 0 0 0 8 9999999999 0 000 0 77 0 4 44 3 8 0 8 000 22222222 0 666666 4 4 0 6 4 0 8 4 4 0 22 2 7 22 7 77 5 222 2 77 3 7 33333 444444444444 99 44 0 7 44 99 6 7 3 3 0000000000000000000 000 1 3 6 4 0 222222 222222222222 7 0 22 777 2222 6 3 2222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 0 5 7 7 6 88 2222222 8 0 0 4 6666 8 8 8 2 33 0000 5 555 000 0 5555555555555555 0 7 7 7 7 7 0 0 0 222 0 2 000000000 22 555 2 5 2 000 0 222 2 0000 55 0 4 88 0 1111 0 7 99 6 0 7 7 00 7 00 888 8 4 8 4 8 0 44 0 00 0 8888888888888 2 2 55 88 0 0 2 55555 0 88 0 8888 0 555 22222222 0 5 5 0 8 0 3333 3 7 7 3 7777 333 3 0 0 7 0 0 3333 3
consensus : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCGAGGNGTAAAGTCTGGTGGGGCTTAGCNCANGTTCATTCTAGCAAANTCATTCGATTTTATTCAATTGCCATTTTCTCCTTGTTTT-TTC-TTTCCAGNGTCGNTCCA-GTTAGGGTTATG-GTCAATAAC-----CACNACCGTCATGTC-TTC----CCA----------T----------CGA----------GGTCGAGATGT-----------------TCC-------G---TAATTG---GT---------CTTAAT-GGTGGACC----GGTGGTTGTTGATTCTTCTACGGAGGTCACCT-GTTTCACCTACGTACTGC-TTTTGG---CANACCTTACAACCGATAAGGTAGACGCAGTTGTCCGTGCGACA-GGACGTNGCT-CCCAANATTTTGTAGCTNCG-NCCTGTGACAGGGCTGCTGAAANTGTCAG----T----G---C----GCTGCGTTTGCACATNAGGCAT--CT--NA--TCNGA--ACANGTNTTGAAACCNCCGTTGGGTAATGGGTTATCCAGCCTAGTTCTAACTACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATNG-GNGGNTCTTTG--AAGACCCTAGCCATTCNTTNGTTGNTGTGNAGAATGGGNAAATG-----NCT-TC-TCAGGATGNTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCG-CCT-TCTTCTCT-C-GNTTATATTGAAGNAGGGATTCTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGNTTGCACT-TGGG-G--GCTTTG-TAGCCTCTCTTGCACAGGTGNTTTTTC--GATGG-NTGCT-TTGTTC-TT-A---TAA--C-GNAA---CAGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCCTTAGGTACTCCTTTGAAGGTATGAGGT-GG-TGACAA-C-T-GATGGCATGGNATATATAAATGTGAGTCAGCGGGTTTNGTGTGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANCGTG---GAAGTG----GTATCCAAGAATACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----ATAAAGTTNTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAA-GG-CGATTGTCTGAGT-AAGTTGCGTTCAAATCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCACTNACTTGTAAGTAATGTTCGCCGTTGAACGCGAAGTTATTGAGTTTGAGGACATNA--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTGTCAGGGCCCTGCTATCCCAANCCTCTCTGCAGGCTTCAATGCCTTCCATCGTGGGGGATGTTCGTGTAAAGCGAAGTCGTATCCATGGTCGCGAGGNGAATATNGTCNGGCAGGTTNNAANAAAGGT--TTTTG--TTA-AGGTAACCAGTNGTGTCCTTCAGGTATGACGGTAG---CTTNACAACGTGCGGACG----GAGATGTAGGTCAATGAATT-CTGAGATTTTCTCCGTGGGGTGTCCGATGGCACTCACTATGGGACGGCCAGGCATGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GG--TCTACAGTCGAG--AGGCAGCAATGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTNTCGNTGATNGTGGCAGAAAACGTT--TTNGTGGGGTCGGAGTCCAG-T-------TNTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCCGCTACGTATG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CCG---TTNTTTT---AGC--CT---NAAGGNCAGCTCTCTCTTCTTTGCTNAGATTGTCC-GGAATA-TT-CTGTTTCGTCGAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTNGATGTAGGACTCGANGGCCGCACATTTTNCTANTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAG-AGTTT
Reference ( family-3283 ) : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCGAGGNGTAAAGTCTGGTGGGGCTTAGCNCANGTTCATTCTAGCAAANTCATTCGATTTTATTCAATTGCCATTTTCTCCTTGTTTT-TTC-TTTCCAGNGTCGNTCCA-GTTAGGGTTATG-GTCAATAAC-----CACNACCGTCATGTC-TTC----CCA----------T----------CGG----------GATCGAGGTGT-----------------TCC-------G---T--TTG---GT---------CCTAAT-GGTGGACC----GGTGGTTGTTGATTCTTCTACGGAGGTCACCT-GTTTCACCTACGTACTGC-TTTTGG---CANACCTTACAACCGATAAGGTAGACGCAGTTGTCCGTGCGACA-GGACGTNGCT-CCCAANATTTTGTAGCTNCG-NCCTGTGACAGGGCTGCTGAAANTGTCAG----T----G---C----GCTGCGTTTGCACATNAGGCAT--CT--NA--TCNGA--ACANGTNTTGAAACCNCCGTTGGGTAATGGGTTATCCAGCCTAGTTCTAACTACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATNG-GNGGNTCTTTG--AAGACCCTAGCCATTCNTTNGTTGNTGTGNAGAATGGGNAAATG-----NCT-TC-TCAGGATGNTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCG-CCT-TCTTCTCT-C-GNTTATATTGAAGNAGGGATTCTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGNTTGCACT-TGGG-G--GCTTTG-TAGCCTCTCTTGCACAGGTGNTTTTTC--GATGG-NTGCT-TTGTTC-TT-A---TAA----GNAA---CAGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCCTTAGGTACTCCTTTGAAGGTATGAGGT-GG-TGACAA-C-T-GATGGCATGGNATATATAAATGTGAGTCAGCGGGTTTNGTGTGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANCGTG---GAAGTG----GTATCCAAGAATACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----ATAAAGTTNTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAA-GG-CGATTGTCTGAGT-AAGTTGCGTTCAAATCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCACTNACTTGTAAGTAATGTTCGCCGTTGAACGCGAAGTTATTGAGTTTGAGGACATNA--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTGTCAGGGCCCTGCTATCCCAANCCTCTCTGCAGGCTTCAATGCCTTCCATCGTGGGGGATGTTCGTGTAAAGCGAAGTCGTATCCATGGTCGCGAGGNGAATATNGTCNGGCAGGTTNNAANAAAGGT--TTTTG--TTA-AGGTAACCAGTNGTGTCCTTCAGGTATGACGGTAG---CTTNACAACGTGCGGACG----GAGATGTAGGTCAATGAATT-CTGAGATTTTCTCCGTGGGGTGTCCGATGGCACTCACTATGGGACGGCCAGGCATGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GG--TCTACAGTCGAG--AGGCAGCAATGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTNTCGNTGATNGTGGCAGAAAACGTT--TTNGTGGGGTCGGAGTCCAG-T-------TNTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCCGCTACGTATG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CCG---TTNTTTT---AGC--CT---NAAGGNCAGCTCTCTCTTCTTTGCTNAGATTGTCC-GGAATA-TT-CTGTTTCGTCGAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTNGATGTAGGACTCGANGGCCGCACATTTTNCTANTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAG-AGTTT
gi|1 : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCAAGGTGTAAAGTCTGGTGGGGCTTAGCTCAAGTTCATTCTAGCAAATTCATT-GATTTTATT--ATTGCCAATTTCTCTTTGTTTTATTC-TTT-CAGAGTCACTCCA-GTTAGGGTTGTG-GTCAATAAC-----TACGACCGTCATGTC-CTC----TTA---------------------CGG----------GTTC--GGTGA-----------------TTC-------G---T--TTG---GT---------CTTTAT-AATATACC----GGTGTTTGTTGACTCTTCTTCGGAGGTCACCT-GTTTCACATACCTACTGC-TTTTGG---CATTTCTTACAACTGATAAGGTAGGTGCAGTTGTCAGTGCGGCA-GGACGAAGCT-CCCAAAATTTAGTAGCTCTG-TCCTGTCACCGGACTGCTGAAAGTGTCAGT---T----GGCCC----GCTGAATTTGCACATGAGGCATCACT--TA--TCAGA--ACACGTGATGAAACCCCAGTTGGGTAATGGGTTATACAGCCTAGTTCTAACTACAATGTCCTTTATATTTCAAGGT-TG--TCTGAAGGCCG-CCATTG-GAGGGTCTTTA--AAGATCCTAGCCATTCGTTTGTTGTTATGCAGAATGGGCAAATG-----GCT-TT-TAAAGATGGTATTGAGGTTCTTCAGGGCGTGATGAAATGTAGTAACTAAATGGA---CT-CTATTG-CCT-TCTTCTCTCC-GGTTATATAGAAGCAGAGAGTTTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGCTTGTACT-CGAACA--GCTTTA-TAGCCTCTTTTACATAGGTGGCTTTTC--AAGAGTCTGCT-TTGTTT-TT-C---TAATTCCGAAC---CAGA--G--GAACAGATACGACGAA-CTCGT-GTAGCTAA--AACCTTAGGTACTCCTTTGAAGGTATGAGATGGG-TGACAG-CTT-GAAGGCAT--CATGTATAAATGTGAGTCAGCGGGCTTTGTGTGGAGGTTG------AATTC---------A--ATTTTATCATTCAAGAGAGTG---GAAGTG----ATATCCAAGAATATGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGGTGAAATGAGT---TGG-------------------TAAAGTTTTCAAGCCTATCTCG-GCCCTCCTTCCATTTCATTTCAATGTCATCAATGAAACACAACCAACTATGGGGTTTAAAGGG-CGATTGTCTGAGT-AAGTTGTGTTCCAATCTTCCCATGAAAATGTTGGGATACGAATGAGCCATTTTCGTTCCCATAGCTGTGCCACTAACTTGTAAGTAATGTTCGCCGTTGAACACGAAGTTATTGAGTTTGAGGACATAA--TCAAGGAGCTTGACCAATTATTCTGTGGAAGGA---TGTGTCAGAACCCTGCTATCCCAAACCTC----------------CCTT-CATCGTGGGAGATGTTTGTGTGAAGCAAAGTCATATCCATGGTTGCGAGAAGGATATTATCAGGTAGGTTGGAAGAGAGGG--TTTTG--TTA-AGGTAATCAGTGGTGTCCTTCAAGGATGATGGTAG---TTTAACA---TGTAGGCG----GAGGTGTAGGTCAATAAATT-CTGAGATTTTCTCCTTGGGGTATCCAATTGCACTCACTATAGGGCGGCCAGGCATACCTTCTTT--GTGGATTTTAGGCGGTAAATAAAATTGTCCA-GG--TCTACAGTTGAG--AGGCATCAATGTTTCAAAGACAT--TATTACCAATTTTCTCGTCTTTGTACATTTGCTCAAGAGTGTCGTTGATTGTGGCAGAAAACGTT--TTGGTGGGGTCGGAGTCCAG-TTTAGCAGTTTAGTGTAAAACCGTTCATCCGGGACATGTCTGTGCGCTTCCGCTGTGTATA-TTATCTTGTCTAATACCACCAATGTTGACCCTCTGTCTGCTTTTTTTTT-TTATAACAATGTCATC-CCGT--TTGTTTT---AGCT-CT---TAAGGCTAAC-CTCTCTTATTTGCTTAACTTGTCCGGGAATATTT-CTGTTTTGTTGAG-TAG--T-TTTTCAATGTC---CTGCTCAACTAATTCGATGTAGGGCTCGATGGCTGCACATGTTCCTATTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAGTAGTTT
gi|10 : ACTGC-TTCTGATGACAAACTTTGCAACCGAGGAGATAAACAAAGTTATT-----------GAAGTCGC---CTAATATTCTGTAACTACG-GTCTGTGATAGGACTGCTGAAGGTCTCAGGGGGTA---G---A----GTTGTATTTGCA--TAAGATAT--CT--GA--GATGATGATAGATCTTAAATCCTCCAATCGGTAATAGGTTGTCCAGTCTAGTCCTCACCAATATGTCCTTTATGTTCCT-GGTGCA--CCTAAGGGCAGTCCGTAG-GTGGACCTTT------------GTCATTCGTTGGTTCTTGTGTAGAATAG--AAATG-----A-------CAGGATGGT----AAG----------------------TGGTGACTAAG-GGA---CC--------CCT-GCTTCTCT-C----TACATTGTAAAATAGATCGTCTGTCTTGTTC-GGTTAACTCATCAACTG
gi|11 : CCTGTGATAGGACTGTTCAAACTTTCAG----T----G---TCTGAGCTACATTCGCACAATTGATGT--CT--GAGGTCTGA--GCATATGTTGAAACCTCCATTAGGTAAAGAATTATCCAGTCTATCCCTAACATCCATGTCCTTTAGGTTTCTAGG--CG--TCTGGAGGACG-GCATAG-GGGACTCATTG--AAAACATCAGCCTTTCATTTATTGGGATGCAGAATGGGCAGATA-----CCG-TC-TCGAG-------------TCTTGAGGGCGGGATGGTATGTAATagg
gi|12 : AA---GAGA--GA-GAGCA--TGTGACAAAACTCTT-GTGCCTAC--ACCTTTAGGTACTCTTATAAAGGTATAAAGT-GG-------------ATAGCATAAGATACA-GAATA-GAATCCACAGACTTTGTATGGAGGCTGCATCAGAATTCTTGCATAATG--ATTTCATCATTtttgaggtaaatgacttttgaggatctttccttgtttt
gi|13 : aaaacatccttttaacagatagctttgcttttaaatactctactctgttttggaatgctgtgggagATGATGGTAG---CTTCATAGCATATGGACATGCAGAGATGTAGGTCAATCAATT-CTGAGATTTGCTCCGTGGGGTGCCCAATGGCACACACTATGGG-TGACCAGGCACACCCTCCTT--GTGGATTTTAGGCAGTAGATAGAATTGCCCA-GGTATATACAGTTGAG--AGGAAGCAATGTTTCAAAGACAT--TTTCACCAATTTCCTCGTCTTTGT-----------AGAGTTTCACTGATGGTGGCAGAAAACGCT--TTattgagattaacaaaattgggaacattttcaag
gi|14 : aaaACAGTTGAG--AGGCAGCAATGTTTCAAAGACA-------ACCAATTTTGTCATCTTTGTACATCTGCTTAAGAGTGTCGGTGATTGTGGCAGAAAACGTT--TTGGTAGGGTCGGAATCCAG-T-------T-TAGTGTAAAACCGTTCATCCGAGAGTTGTCTATGCGCTTCCTCTA--TATG-TTGTCTTGTCTAATACCACCACTGTTAACg
gi|15 : TAGTATGGAGGCTG------AATTTT--------A--ATTTCACCATTCCAGAATGTG---GAAGTG----GTATCCGAGAATACGTTCTTGGAGCTAGAAATTTC---------CA---------CTGTAAATTTTATG--GAA---TGATGAAATGAGT---TAG-TTAAGGA----A-----ATAAAGTTTTCAAGTTTATCTCG-GCCCTCCGTCCATTTCATCTCAATGGCATCAATGAAATGCAACTAACTATGGGGaatgtcatactggttttatcaaaatgtc
gi|17 : acaagtgtgaataGTG---GAAGTG----GTATCCAAGAATACGTTCATGGAGCTGGAAATTTC---------C--------------------------------------AATG----------------------------TAA---TCT---GTCTATTTTC-GCCCTCCGTCCATTTCACCTCAATG---------AAACGCAACCAATTATGGGGTTTAAA-GG-AAGTTGTCTGAGC-AAGTT-----------TTCCAATGAAAATGCGGGGATACGATGGAGTCATCTTCGTTCCCATAGCTATGCCACTTACTTGTAAGTAATGTTC
gi|18 : aTCATGTTTCT--GT-TGCCTCTGAAGGATG-TCATAGTGGGGGTCTTTG--AAAACATAAGACGTTCATTTGTCGGCCTACTGAATGGGTAGACA-----TTT-TC-TCAGAATGCATTTGAAATACTTGAGGGCGGGATGGTAAGCAGT
gi|2 : atcagtattgaATTGTATGAGG-ATGTTGCGTTCAAGTCTTCCCATGAAAATGTTGGCATACGATGGAGCCATCTTTGTTCCCATAGCTGTGCCACT----TGTAAGTAATGTTCTCCGTTGAACATGAAGTTGTTGAGTTTGATGATATGT--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTG---GGGCCTTGTTATTCCAACCCTCTCTGCAGGCTTCAATGCCTTCCATCATAGGGGATGTTCTTATAAAGTGAAGTCACATCCCTGGTCACAAGAAGAATATTGTCAGGTAGGTTGGAAGAAGGGT--TTTTG--TTA-TGGTAGCTAGTA-----------GTATGATGGTAG---CTTTACAACATGTGGTCG----GAGATGT---CCAATGAttgtcattttgaggttttctctgtattgtttga
gi|2 : GAGATGTCCAATGACACC----ATGGGACGGCCAGGCATACACTCT------G---TTTAGGGGGTAGATAAAATTGTCCA-GA--TCTACAGTTGAG--AGAAAGCAGTGATACAAAGACAT--TGTCACCAAGTTCCTTGTCTTTGTACATCTGCTTAAGAGTTTTTGTGATGGTGGCAAAAAACGTT--TTCGTAGGGTTGGAGTCCAG-T-------TA-AGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGTGCTTCTACCATGTATG-TTTCCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTTGTTA--ACAATGTCATC-CTG---GTCTTTT---AGC--TTTTGTAAGACTGAC-CT---TTCTTTCCTTAGATTGTCCTGGAACC-TTGCTGTTTTGTCAAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTGGATGTAGGACTCGAGGGCTGCACATTTTACTGATGGAGGTTCCAATTTGCTCTTAGTTC----GGTAG-AGTTTcaccatgggacggccaggcatacactctgtttagggggtagataaaattgtccagatctacagttgagagaaagcagtgatacaaagacattgtcaccaagttccttgtctttgtacatctgcttaagagtttttgtgatggtggcaaaaaacgttttcgtagggttggagtccagttaagtgtaaaaccgttcatccgagagttgtctgtgtgcttctaccatgtatgtttccttgtctaataccaccactgttgaccctttgtctgcctttttgttaacaatgtcatcctggtcttttagcttttgtaagactgacctttctttccttagattgtcctggaaccttgctgttttgtcaagtagtttttcgatgtcctgctcaactgcttggatgtaggactcgagggctgcacattttactgatggaggttccaatttgctcttagttcggtagagttt
gi|20 : attgtatgaggatgttgcgttcaagtcttcccatgaaaatgttggcatacgatggagccatctttgttcccatagctgtgccacttgtaagtaatgttctccgttgaacatgaagttgttgagtttgatgatatgttcaaggagcttgaccaacgattctgtggaaggaatttgtggggccttgttattccaaccctctctgcaggcttcaatgccttccatcataggggatgttcttataaagtgaagtcacatccctggtcacaagaagaatattgtcaggtaggttggaagaagggtttttgttatggtagctagtagtatgatggtagctttacaacatgtggtcg-G--GCTTGG-TTGCCTCTCTTGCAC--GTTTTTTTTT--GATGG-ATGCTCTTGTTC-TT-A---TA-----GAAAGTGCAGA--GTAGAGCAGATATGGCGTA-CTTG--GTGGCTAA--ACCTTTAGGTA-----TTG--GGTA-GA-----A-TGGCAA-C-TAGATGGCATGGAAT-TATAAA
gi|21 : a-G--GCTTGG-TTGCCTCTCTTGCAC--GTTTTTTTTT--GATGG-ATGCTCTTGTTC-TT-A---TA-----GAAAGTGCAGA--GTAGAGCAGATATGGCGTA-CTTG--GTGGCTAA--ACCTTTAGGTA-----TTG--GGTA-GA-----A-TGGCAA-C-TAGATGGCATGGAAT-TATAAAatacatcacgaggcagccgagt
gi|22 : aTAAT-GGTAGACC----GGTGGTTATAGATCTTTCAACATAGATACCCTAGTTTCACCTACGTAGCG----TTGGTCACAAACTTTGCAACTTTTAAGATAGATACAGTCGTCCGTGCGACA-GGATGTGTCC-TCAAGGATT--ATAATATAA-GCCAGTGGCAGGGCTatacatcacgaggcagccgagt
gi|24 : tctttTTTTTCCT-GTCTT-TTC-CTCTCTGCATCGGTCCATGTT-GGGTTATA-ATCGATAAT-----CACCACCTGCATATC-Tct
gi|25 : atgcgcacgaaatcattcagtttgttcattccatctgggcggaatgatttcaagcgatgcatctatgaACATATAGATGGCAGTTAGCAGTTTTGGCGTGGAGCCTG------AACTC---------G--ATATTTCCGTTAACGACCTTA---GACGTG----CTGTCTAGAAAGACGATAGTGGATGTGGAAAT
gi|27 : aggaggatggcgggattagatatAGGCGAATTTGGTGTTGCAGGT-CCAATAAATGTAATTTTAATTTA-GGGTAACCATTCGGGTCCTTAAGGTGTGACGGTAAATCCTTTACA---TGCTGACG----GGG
gi|28 : tgaaagttcaataattatcCTTTA-TAGCCTCTCTTGCACACATGGTTTTTC---ATGG-TAATT-TTGTTC-TTGA---TAAAGT-GCAA---GATT--G--AAACAGATGCGATGGA-TTCGA-AGGGCTAAGTACTCTCAGGTATTCCTTTg
gi|29 : TGGGATGTCCTGTAGCAATGACTATTGGACTTCCATGCATGTTTTTTTTTTATGAATTTTAGGAATTAAGT-AAATTTTCCT-GA--TCTACAGTCG
gi|3 : TGAAACCCCCGATAGGTAGTGGGTTATCCAGCCTAGTTCTGACTACAATGTTCTTTAAATTTCTAGGT-TG--TCTGAAGGCCT-CCATTG-CAGGGTCTTTA--AAGACCCTAGCTATTCTTTCGTTGTTATATAGAATAGGTAAATG-----GCT-TT-TAAGGATGGTATTGAAGTTCTTCAGTGCGGGGTAAAATGTAGTCACTAAGGGGA---CT-CTATTG-CCT-TCTTCTTT-CTGTTTATATAGAAGCAGGGAGTTTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGGTTGTAC--TGGA-GCAGCTCTA-AAGCCTCTTTTACATAGGTGACTTTTCAGGA-GT-TTGCT-TTGTTT-TG-AGTTTAATTTCGTGA---CAGA--G--GAACAGATACGACAAA-CTTGT-GTTGCTAA--ACCCTTAGGTACTCCTTTGAAGATATGAGGTGGG-TAACAGCC-T-GAAGGCAT--CACATACCAGTGTGAGTCAGTGGGTTTTGTGCGGTGGCTG------AATTC---------A--ATTTCACCGTTCATGAGAGTGATCGAAGTGGTAAGTATCCAAGAATACGTTCTTGGAGCTTGAAATTTC---------CT---------T-----------TG--TAAATTTAATGAAATGAGGAAATGG-T-----A----AAGGAGATAAAATTTTCAAGTCCATCTCG-GCCCTCCTTTCTTTTCAACTCAATGTCATCTTTGAAACCCAACCAACTATGAAGTTTAAA-GGCCGATTGTCTGAGTAAAGTTGCATTCAACTGTTCCCATGAAAATGTAGGCATACTATGGAGCCAttggaacaaagcacttc
gi|30 : TCAATAAC-----CACCACCGTCATGTC-TTC----CCA----------T----------
gi|31 : ACGTTTTTCAGATTTCCTGGG-CG--TCTGAAAGCCA-CCATGG-ATGGTTCTTTG--AAGACCATGGCCATTCTAGAGGTAATGTGAAGAGTGGGAAAATG------CT-TC-Tgcatatgagtgtccctcgagatgaaaatgctcggcgacgggttcttggacccttttggttcttatggtagaccgatga
gi|33 : ttcagGTTAATGAATTTCTGGGATTTTTTCCGTGGGGTGTCCG-------TCA------GACACCCTGACATGGCTGTTTT--GTGTATTTCGGGTAGCAAATAAAATTGTTCA-tc
gi|34 : TG-ATCAATAACAAACTCATGAATGTCATCCCATTCAGGACCA----------T----------TGA----------GGCTGAGACGT-----------------TCC-------A---TAACTGGTTGT---------TTTGAC-GGTGGATC----GGcttc
gi|35 : agaatagTTGTCTGC-----TTTT-TTATGACTATGTCGTCACCGGTTTTTTTTT---AGCAATT---GGAGGACAGCTCTCTCTTCTTTGCTGAGATTGTCT-G
gi|38 : ACAATGGGGCGGCCAGGAATATTCTGTTT--GTGTATTTTAGGAAGCATGTAAAATa
gi|39 : ctactgcagatTCAATAAT-----CACTACTGTCATGTC-TTT----CCA----------T----------
gi|4 : aAGAATTATG-GTCAATTAC-----CACTACTGTCATATC-CTC----CCA----------T----------CTGTGACCATTAAGATTGAGGTGT-----------------TCCCCGACGGGCTCT--TTG---GTTCTTTTTGTCCTAAT-GGTGGATC----GGTGGTTGTTTATTCTTTGGCGGATGTCACCC-GTTTCTCCAACATATTGC-TTTGAG---CAAACCTTACAATTG---AGATACACACAGTTGTCTGTGTGACA-GGACAT-GTTACCCAATATTTTGTAGATGCG-ACCAGTAAC-GGGCTAGTAAATTTGTCAG----T-------------GCTGTGCTTACACAAAAGGCAT--CTGGCA--TCGGA--ACAAGTTTTAAAACCACCATTGGGTAATGGGTTGTCTAATTTCGCTCTCACTACCATGTCCTT----TTCCTAGGC-CG--TCTAAATGCAG-CCATTG-GTGGATCCTTGAAAAGATCC--GTCATTCTTTTATTATTGTGAAGAATATGTACATGTAGATTCTCTC-TCAGGATGCTGTTAAAGTTCTTAAGGACGGGGTGAAATGTTGTGAC-ATGTGGAACCCTACTATTGTCTT-TCTTCTC-----ATTGTATTGAAAAAGGGTTTCCCTGTT-CTTTGTGGTTATCTCATCAATTGCGGATTGCACTGTGTG-G--GCTTTG-TAGCCTCGATTACACAGATGttgttgaatgcaaaattaaaatgctcggtgac
gi|40 : gCAGGTTTTAAAGCCATCATTGGGTAAAGGATTTTCCTACTTGGTTCGAACCACCATGTCTT
gi|5 : G--TCTGAAGGCTG-TCATGT-GTCGTTCTTTG--AAGATCATGGCCATTCTAGGGGTAATGTGAAGAGGGGGGAAAT------ACT-TCTTCAGAATTTTGTTCAAATCTTTTAAGACAGGGTGGTACGTAGTGACCACTGGGA---CT-ATGTCA-CCTATCGATTCG-T-GTTTGTATTGTAGTAGGGATTCTCTGTCGTGTTCT-GACATCTCATCAACAGCTGCTTGCACT-TTGG-G--GGTTTGATAACCTCTCTTGCACAGATG--TTTTA--GATGG-GTGCT-CTGTTCTTT-A---TGA----AGTG---CAGAGTG--GAGCAGGTACGACGGA--TTGTGGTGGCTAC--ACCTTTAGGTACTACTTTGAATGTATCAGTA-GGATGACAA-C-T--ATG-------AGATACAAATTTGAGTCAGTCGGTTTGGTATGGAGACTG------ATTTC---------AACATTT--CCGTTAAAAATCTTG---TTAACA----G-A---AAAAAGACGTTACTGGATGTGGAAATATCAACAGTTAACA---------TGA---------TC--AAA---TTATGGAATGAGT---TGGCT-----AGTTTA-----ATAAAGATGTCAAGATT-TCTCATACTTTTTACCCACTTCGTCGCAAT
gi|6 : AATT-CAGATAATCTCTCCGTGGGATGTCTGATGGCACTGACAATGAGTCGACCAGGCACGCCTTCTTT--GTGAATTTTAGGGAGAAAATAAAACTG-CCATGG--TCTGCAGTC-AGCCGGACAG-AGTGCTTCGTAAACGTAGTCTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTCCTCTGTGGGGTCTGAATTCAGCT-------TCT--TGTAATACTGCTCATCAGATAGCTGCCTGTTGGCTTCAGCTACATACGATTCTCT-GTCTAGAACAACTACTGTAGACCCTTTGTCTG----CTTTCT-TTACGACAATATCGTC-ACG----GGTTTTGAGAGA--CT---GAAGGGCAGCTCTCTCTTCCTTGTTGAAGTTATCC-GAAATA-TA-TGG--TCGTTGAGACAGGATATCTTCGATATTAGACTGC---ACTGCGTAGATATAAGATTCCAAGGCCCCACATTTTTCAAGTGGAGGTTCCCAGGGATTCTTAGGCTTACAAGTAG-AGTTTcaacttacagacc
gi|7 : CCAACAAAATATTCTTGAAGTTGGAAATTTC---------CACCGTGAACCT-----------TGTAGAA---TAATGGAAAGAGT---TTG-C-----A----GTCATGATAAAGTCATAGAGGCTTTCGCG-ACTTTCAAACCACTTCATTTCAATGTTATATGTGAAATGTAGCCAACTACGAGGTTTA-------GATAG--TGAAT-GA-TTCCATT---ATCTT--TATAAAA-------CCCAAAATGGTGTAATTTTTGTTCTCATAGTTGTGCCACTGATTTACAGATAATATGAGTCCAAGAA-GCTAAGTGATTCAGTTGAAGAACATTACCTCAAG
gi|7 : ATGTATGTGTAAAGTGAAATAGTATCCATGGTCACAAGGCGAGTATGGTCTGGCGGGGTTTAATATAGGT-----------ACATGTAATCAGATGTGTTCTTCAGGTATGACGGTAA---ATCGTCTATGTGCTGACG----GAGATGCAAGTCATTGAATT-CAGATATTTTATCTTTGGGGTGTCtgtaatgtatgtgtaaagtgaaatagtatccatggtcacaaggcgagtatggtctggcggggtttaatataggtacatgtaatcagatgtgttcttcaggtatgacggtaaatcgtctatgtgctgacggagatgcaagtcattgaattcagatattttatctttggggtgtc
gi|8 : ccaacaaaatattcttgaagttggaaatttccaccgtgaaccttgtagaataatggaaagagtttgcagtcatgataaagtcatagaggctttcgcgactttcaaaccacttcatttcaatgttatatgtgaaatgtagccaactacgaggtttagatagtgaatgattccattatctttataaaacccaaaatggtgtaatttttgttctcatagttgtgccactgatttacagataatatgagtccaagaagctaagtgattcagttgaagaacattacctcaagtgtaCAATGAAATTTAC-ACGAGTATAGGTTGTGAAGAGAGGCGAGGAGTAAAGTCTGGT-GGGCTTAACATACGTTCATTCT-GCAAAGTCATTCGATTTTATTCAATTGCCATTTT
gi|8 : ATTTTCTC-TTGTTTT-TTCGTTTCAAGAGTCACTCCA-GTTAGGGTT-TGCGTCAA-AAC-----TACGACTGTCCT-TC-TTC----CCATTTGTAACCCT----------CTA----------GGTTGAAATGTTCCCAACGGTTCGGTGATCC-------G---T--TTG---GT---------CTTAATAAGTGA--C----GGTGATTGTTGACTCTTCT-CGGA-GTCACCT-GTTTCACCTACGTACTGCTTTTTGG---CATTTCTTACAACCGATAAGGTAGAT-CAG-TG-CAGTACGGCAGGGACATAGCT-CCCAAAATTTTGTAGCTCTGTTCCTGTCACCGGGCTGCTGAAAGTGTCAG----T----gaggccgaaatgactttaaatctgtgcatcagaattttctcttgttttttcgtttcaagagtcactccagttagggtttgcgtcaaaactacgactgtccttcttcccatttgtaaccctctaggttgaaatgttcccaacggttcggtgatccgtttggtcttaataagtgacggtgattgttgactcttctcggagtcacctgtttcacctacgtactgctttttggcatttcttacaaccgataaggtagatcagtgcagtacggcagggacatagctcccaaaattttgtagctctgttcctgtcaccgggctgctgaaagtgtcagt
gi|9 : caatgaaatttacacgagtataggttgtgaagagaggcgaggagtaaagtctggtgggcttaacatacgttcattctgcaaagtcattcgattttattcaattgccattttgaggccgaaatgactttaaatctgtgcatcagaTCTCCTTATTTT-TTC-TTTCCA-TATTGGTCCA-GTGCACGTTTTG-GTCAATAGC-----CACTACTGTCATGTT-TTC----CCA----------TTCATGTCCTGCGA----------GATCGAAATGC-----------------TCT-------G---CAACTG---AT---------TCT--T---TCAACCATTTGGTAGTTATTGATCCTCCTACGTAAGTCTCCT-GTTTCATCTACGTATTGT-TGATCA---CAGAGCTTACAGTTTATGTTGGAAATGCAATTATCCGTGCGACA-GGCTGTTTCC-CCCAGAATTCAGTAGTGTCA-ACTTGTGACAGGACTCTTAAAACTGTTAC----TTCTAG---C----GCTGTGTTTGCATATCGGGCAT--CTACCA--TCAGA--ACATG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TGGTGATAGACTCGCAGACAAAAAAATGAACGGCAACCCCCAACCCCCCCTCCCCCCCTCCAGAACAACACCTAATATTAACCACGAGTCAGAAACTATGTCACATTCATTTGTTTGTGTCATGTCATTGGAGGCAATGACCTCCAACCTAATACTGATAGGCATCCAAAACTTCTTGGAGCCTTTTTCGTTGTCTTGTCGCAATATCGACCCAGT
Unaligned ( gi|19 ): GGTGAAGTCATTTAAGTTTATTCAAACCATCAGGGCAAAATGACTTCAGTCTACTTTGTCCAGAACTTCTCCTTGCCTATTCTCTCTGCATCAGAGAGGCATCTAGAGTCGTGATCTGTCATATCCTTCCATCTATGGCCATTAAGGCTGAAGTGATCCCCAACAGATTC
Unaligned ( gi|23 ): ATATTGCTCTAATGAACTGGTAATGGTTTAGCCCGTTGTCATCTTGGAAAAGTCATAGAGTTTGTTAATACCTTGATGTTCGAATGACTTCAGCCTATGCATTTAGAATTTCTCCTTTCGTTTTCTTTAAATATCTGACCA
Unaligned ( gi|26 ): GACTAGGACTGTCGATGAGATTCTCGGTGCTAGAGTTGTGTTTGCGTGATTCTAGACATCCTGATATCAGTATGTTAAAACTGCCTCCATTTAAGCATTAAATTGTTAAGTCTAGTCTTCATCA
Unaligned ( gi|32 ): AGCAAAGTAATTGAACTATTTTAAACCATCATGGTGAAATTACATCAGCCTGTGAATCTTCTCTTCTTCATCTCTGCAAAAGACTATCTAGACTCGTGAT
Unaligned ( gi|36 ): TCATTCTATTGAAATTTCTGGTATTTTTCCTGCCATAGGGGCGGAATGATTGCAATATATGCATCGATCAAGGAATGTTAT
Unaligned ( gi|37 ): ATGATGATGCTCAAACAAAGAATAAATGACAAAATCCCCCACAGAACAACACATAGTATTAACTAGGCGAAGCTAGACCAC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 11 1 1 1 11111 1111 999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111 11 222 11 555555555555555 22222222222 11 1111111111 111 111 11 111 222222 1 11 111 1 11111 555555555555 22222 11 3333333333333333333 222 111111 444444444444 111 1111 1111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111 1111 1 1111 222 222 5555555555555555 1 222222222 11 111 222 1111 11 111 11 4444444444444 11 1 22222 1 11 1 3333 111 33333333 1 2 1111 1 2222 222 2222 1
lowQualScore : 5 1 5 1 1 5 1 5 88 6 3 0 0 9999 1 0 5 9 6 22222 1 3 5 2222 666666666666666666666666666666666666666666666666666666666666666666666666666666666 6 6 4444 00 3 1 8 77 333 1 0 3 77 9 6 7 00 1 1 77 4 1 111111111111111 4 3 22 77777777777 1 11 1 1 1 0 0 1 0 1 33 8 99 66 0 5 1 5 1 1 0 66 999 1 1 1 1 2 8888888888 5 000 3 11 3 0 33 0 3 1 8 444 33 4 111 888888 1 1 1 0 1 6 0 1 1 1 33 0 6 99 5 55 7 000 3 77 3 6 33333 000000000000 77777 1 5 44 77 6 0 7 7 5555555555555555555 222 7 2 5 1 1 999999 333333333333 3 1 44 111 4444 1 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 1 3 6 3 5 77 5555555 0 8 5 1 4444 0 3 0 0 77 9999 2 111 111 1 6666666666666666 5 0 0 0 0 0 1 1 1 555 1 1 222222222 11 666 0 2 0 444 1 333 3 7777 33 8 1 33 1 7777 6 1 77 6 1 1 6 99 0 11 111 3 1 2 0 0 1 11 1 11 1 1111111111111 1 0 00 00 0 1 3 66666 0 00 0 6666 1 777 11111111 1 5 2 1 0 0 7777 7 0 0 3 2222 333 7 1 1 0 1 1 8888 3
lowQualScore : . . . . . . . . .. . . . . .... . . . . . ..... . . . .... ................................................................................. . . .... .. . . . .. ... . . . .. . . . .. . . .. . . ............... . . .. ........... . .. . . . . . . . . .. . .. .. . . . . . . . .. ... . . . . . .......... . ... . .. . . .. . . . . ... .. . ... ...... . . . . . . . . . . .. . . .. . .. . ... . .. . . ..... ............ ..... . . .. .. . . . . ................... ... . . . . . ...... ............ . . .. ... .... . . ............................................................................... . . . . . . . .. ....... . . . . .... . . . . .. .... . ... ... . ................ . . . . . . . . . ... . . ......... .. ... . . . ... . ... . .... .. . . .. . .... . . .. . . . . .. . .. ... . . . . . . .. . .. . ............. . . .. .. . . . ..... . .. . .... . ... ........ . . . . . . .... . . . . .... ... . . . . . . .... .
lowQualScore : 5 0 0 0 0 5 0 0 00 5 2 0 0 8888 0 0 6 0 7 55555 0 4 0 1111 555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 7 2222 00 2 0 0 77 333 0 7 2 00 3 7 5 88 0 0 77 9 0 444444444444444 6 2 44 00000000000 0 00 0 0 0 7 3 5 3 0 44 7 33 99 2 0 0 0 0 0 2 99 444 0 0 0 0 8 9999999999 0 000 0 77 0 4 44 3 8 0 8 000 00 6 888 666666 4 4 0 6 4 0 8 4 4 0 22 2 7 22 7 77 5 222 2 77 3 7 33333 666666666666 11111 0 7 44 99 6 7 3 3 0000000000000000000 000 1 3 6 4 0 222222 222222222222 7 0 22 777 2222 6 3 2222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 0 5 7 7 6 88 2222222 8 0 0 4 6666 8 8 8 2 33 0000 5 555 000 0 5555555555555555 0 7 7 7 7 7 0 0 0 222 0 2 000000000 22 555 2 5 2 000 0 222 2 0000 55 0 4 88 0 1111 0 7 99 6 0 7 7 22 7 00 888 8 4 8 4 8 0 44 0 00 0 8888888888888 2 2 55 88 0 0 2 55555 0 88 0 8888 0 555 22222222 0 5 5 0 8 0 3333 3 7 7 3 7777 333 3 0 0 7 0 0 3333 3
consensus : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCGAGGNGTAAAGTCTGGTGGGGCTTAGCNCANGTTCATTCTAGCAAANTCATTCGATTTTATTCAATTGCCATTTTCTCCTTGTTTT-TTC-TTTCCAGNGTCGNTCCA-GTTAGGGTTATG-GTCAATAAC-----CACNACCGTCATGTC-TTC----CCAT----------C----------GAGGTCGAGATGTTCC----------GCGA--------T-----TG---GT---------CTTAATG-GTGGACC----GGTGGTTGTTGATTCTTCTACGGAGGTCACCT-GTTTCACCTACGTACTGC-TTTTGG---CANACCTTACAACCGATAAGGTAGACGCAGTTGTCCGTGCGACA-GGACGTNGCT-CCCAANATTTTGTAGCTNCG-NCCTGTGACAGGGCTGCTGAAANTGTCAG----T----GCC---GCTGCGTTTGCACATNAGGCATC--T--G--A--TCNGA--ACANGTNTTGAAACCNCCGTTGGGTAATGGGTTATCCAGCCTAGTTCTAACTACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATNG-GNGGNTCTTTGAA--GACCCTAGCCATTCNTTNGTTGNTGTGNAGAATGGGNAAATGN-----CT-TC-TCAGGATGNTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCGCCT-T-CTTCTCT-C-GNTTATATTGAAGNAGGGATTCTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGNTTGCACT-TGGG-G--GCTTTG-TAGCCTCTCTTGCACAGGTGNTTTTTC--GATGG-NTGCT-TTGTTC-TT-A---TAA----GNAA---CAGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCCTTAGGTACTCCTTTGAAGGTATGAGGT-GG-TGACAA-C-T-GATGGCATGGNATATATAAATGTGAGTCAGCGGGTTTNGTGTGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANCGTG---GAAGTG----GTATCCAAGAATACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----ATAAAGTTNTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAA-GG-CGATTGTCTGAGT-AAGTTGCGTTCAAATCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCACTNACTTGTAAGTAATGTTCGCCGTTGAACGCGAAGTTATTGAGTTTGAGGACATNA--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTGTCAGGGCCCTGCTATCCCAANCCTCTCTGCAGGCTTCAATGCCTTCCATCGTGGGGGATGTTCGTGTAAAGCGAAGTCGTATCCATGGTCGCGAGGNGAATATNGTCNGGCAGGTTNNAANAAAGGT--TTTTG--TTA-AGGTAACCAGTNGTGTCCTTCAGGTATGACGGTAG---CTTNACAACGTGCGGACG----GAGATGTAGGTCAATGAATT-CTGAGATTTTCTCCGTGGGGTGTCCGATGGCACTCACTATGGGACGGCCAGGCATGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GGTCTA--CAGTCGAG--AGGCAGCAATGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTNTCGNTGATNGTGGCAGAAAACGTT--TTNGTGGGGTCGGAGTCCAG-T-------TNTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCCGCTACGTATG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CCG---TTNTTTT---AGC--CT---NAAGGNCAGCTCTCTCTTCTTTGCTNAGATTGTCC-GGAATA-TT-CTGTTTCGTCGAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTNGATGTAGGACTCGANGGCCGCACATTTTNCTANTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAG-AGTTT
Reference ( family-3283 ) : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCGAGGNGTAAAGTCTGGTGGGGCTTAGCNCANGTTCATTCTAGCAAANTCATTCGATTTTATTCAATTGCCATTTTCTCCTTGTTTT-TTC-TTTCCAGNGTCGNTCCA-GTTAGGGTTATG-GTCAATAAC-----CACNACCGTCATGTC-TTC----CCAT----------C----------GAGGTCGAGATGTTCC----------GTAA--------T-----TG---GT---------CTTAATG-GTGGACC----GGTGGTTGTTGATTCTTCTACGGAGGTCACCT-GTTTCACCTACGTACTGC-TTTTGG---CANACCTTACAACCGATAAGGTAGACGCAGTTGTCCGTGCGACA-GGACGTNGCT-CCCAANATTTTGTAGCTNCG-NCCTGTGACAGGGCTGCTGAAANTGTCAG----T----GC----GCTGCGTTTGCACATNAGGCATC--T--N--A--TCNGA--ACANGTNTTGAAACCNCCGTTGGGTAATGGGTTATCCAGCCTAGTTCTAACTACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATNG-GNGGNTCTTTGAA--GACCCTAGCCATTCNTTNGTTGNTGTGNAGAATGGGNAAATGN-----CT-TC-TCAGGATGNTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCGCCT-T-CTTCTCT-C-GNTTATATTGAAGNAGGGATTCTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGNTTGCACT-TGGG-G--GCTTTG-TAGCCTCTCTTGCACAGGTGNTTTTTC--GATGG-NTGCT-TTGTTC-TT-A---TAA---CGNAA---CAGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCCTTAGGTACTCCTTTGAAGGTATGAGGT-GG-TGACAA-C-T-GATGGCATGGNATATATAAATGTGAGTCAGCGGGTTTNGTGTGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANCGTG---GAAGTG----GTATCCAAGAATACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----ATAAAGTTNTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAA-GG-CGATTGTCTGAGT-AAGTTGCGTTCAAATCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCACTNACTTGTAAGTAATGTTCGCCGTTGAACGCGAAGTTATTGAGTTTGAGGACATNA--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTGTCAGGGCCCTGCTATCCCAANCCTCTCTGCAGGCTTCAATGCCTTCCATCGTGGGGGATGTTCGTGTAAAGCGAAGTCGTATCCATGGTCGCGAGGNGAATATNGTCNGGCAGGTTNNAANAAAGGT--TTTTG--TTA-AGGTAACCAGTNGTGTCCTTCAGGTATGACGGTAG---CTTNACAACGTGCGGACG----GAGATGTAGGTCAATGAATT-CTGAGATTTTCTCCGTGGGGTGTCCGATGGCACTCACTATGGGACGGCCAGGCATGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GGTCTA--CAGTCGAG--AGGCAGCAATGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTNTCGNTGATNGTGGCAGAAAACGTT--TTNGTGGGGTCGGAGTCCAG-T-------TNTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCCGCTACGTATG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CCG---TTNTTTT---AGC--CT---NAAGGNCAGCTCTCTCTTCTTTGCTNAGATTGTCC-GGAATA-TT-CTGTTTCGTCGAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTNGATGTAGGACTCGANGGCCGCACATTTTNCTANTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAG-AGTTT
gi|1 : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCAAGGTGTAAAGTCTGGTGGGGCTTAGCTCAAGTTCATTCTAGCAAATTCATT-GATTTTATT--ATTGCCAATTTCTCTTTGTTTTATTC-TTTC-AGAGTCACTCCA-GTTAGGGTTGTG-GTCAATAAC-----TACGACCGTCATGTC-CTC----TTA-----------C----------GGGTTCGG--TGATTC----------GT----------T-----TG---GT---------CTTTATA-ATATACC----GGTGTTTGTTGACTCTTCTTCGGAGGTCACCT-GTTTCACATACCTACTGC-TTTTGG---CATTTCTTACAACTGATAAGGTAGGTGCAGTTGTCAGTGCGGCA-GGACGAAGCT-CCCAAAATTTAGTAGCTCTG-TCCTGTCACCGGACTGCTGAAAGTGTCAG----TTG--GCCC--GCTGAATTTGCACATGAGGCATCACT--T--A--TCAGA--ACACGTGATGAAACCCCAGTTGGGTAATGGGTTATACAGCCTAGTTCTAACTACAATGTCCTTTATATTTCAAGGT-TG--TCTGAAGGCCG-CCATTG-GAGGGTCTTTAAA--GATCCTAGCCATTCGTTTGTTGTTATGCAGAATGGGCAAATGG-----CT-TT-TAAAGATGGTATTGAGGTTCTTCAGGGCGTGATGAAATGTAGTAACTAAATGGA---CT-CTATTGCCT-T-CTTCTCTCC-GGTTATATAGAAGCAGAGAGTTTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGCTTGTACT-CGAACA--GCTTTA-TAGCCTCTTTTACATAGGTGGCTTTTC--AAGAGTCTGCT-TTGTTT-TT-C---TAATTCCGAAC---CAGA--G--GAACAGATACGACGAA-CTCGT-GTAGCTAA--AACCTTAGGTACTCCTTTGAAGGTATGAGATGGG-TGACAG-CTT-GAAGGCAT--CATGTATAAATGTGAGTCAGCGGGCTTTGTGTGGAGGTTG------AATTC---------A--ATTTTATCATTCAAGAGAGTG---GAAGTG----ATATCCAAGAATATGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGGTGAAATGAGT---TGG-------------------TAAAGTTTTCAAGCCTATCTCG-GCCCTCCTTCCATTTCATTTCAATGTCATCAATGAAACACAACCAACTATGGGGTTTAAAGGG-CGATTGTCTGAGT-AAGTTGTGTTCCAATCTTCCCATGAAAATGTTGGGATACGAATGAGCCATTTTCGTTCCCATAGCTGTGCCACTAACTTGTAAGTAATGTTCGCCGTTGAACACGAAGTTATTGAGTTTGAGGACATAA--TCAAGGAGCTTGACCAATTATTCTGTGGAAGGA---TGTGTCAGAACCCTGCTATCCCAAACCTC----------------CCTT-CATCGTGGGAGATGTTTGTGTGAAGCAAAGTCATATCCATGGTTGCGAGAAGGATATTATCAGGTAGGTTGGAAGAGAGGG--TTTTG--TTA-AGGTAATCAGTGGTGTCCTTCAAGGATGATGGTAG---TTTAACA---TGTAGGCG----GAGGTGTAGGTCAATAAATT-CTGAGATTTTCTCCTTGGGGTATCCAATTGCACTCACTATAGGGCGGCCAGGCATACCTTCTTT--GTGGATTTTAGGCGGTAAATAAAATTGTCCA-GGTCTA--CAGTTGAG--AGGCATCAATGTTTCAAAGACAT--TATTACCAATTTTCTCGTCTTTGTACATTTGCTCAAGAGTGTCGTTGATTGTGGCAGAAAACGTT--TTGGTGGGGTCGGAGTCCAG-TTTAGCAGTTTAGTGTAAAACCGTTCATCCGGGACATGTCTGTGCGCTTCCGCTGTGTATA-TTATCTTGTCTAATACCACCAATGTTGACCCTCTGTCTGCTTTTTTTTT-TTATAACAATGTCATC-CCGT--TTGTTTT---AGCT-CT---TAAGGCTAAC-CTCTCTTATTTGCTTAACTTGTCCGGGAATATTT-CTGTTTTGTTGAG-TAG--T-TTTTCAATGTC---CTGCTCAACTAATTCGATGTAGGGCTCGATGGCTGCACATGTTCCTATTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAGTAGTTT
gi|10 : ACTGC-TTCTGATGACAAACTTTGCAACCGAGGAGATAAACAAAGTTATT-----------GAAGTCGC---CTAATATTCTGTAACTACG-GTCTGTGATAGGACTGCTGAAGGTCTCAGGGGGTA---GA----GTTGTATTTGCA--TAAGATATC--T--G--A--GATGATGATAGATCTTAAATCCTCCAATCGGTAATAGGTTGTCCAGTCTAGTCCTCACCAATATGTCCTTTATGTTCCT-GGTGCA--CCTAAGGGCAGTCCGTAG-GTGGACCTTT------------GTCATTCGTTGGTTCTTGTGTAGAATAG--AAATGA------------CAGGATGGT----AAG----------------------TGGTGACTAAG-GGA---CC-------CCT-G-CTTCTCT-C----TACATTGTAAAATAGATCGTCTGTCTTGTTC-GGTTAACTCATCAACTG
gi|11 : CCTGTGATAGGACTGTTCAAACTTTCAG----T----GTCTGAGCTACATTCGCACAATTGATGTC--T--G--AGGTCTGA--GCATATGTTGAAACCTCCATTAGGTAAAGAATTATCCAGTCTATCCCTAACATCCATGTCCTTTAGGTTTCTAGG--CG--TCTGGAGGACG-GCATAG-GGGACTCATTGAA--AACATCAGCCTTTCATTTATTGGGATGCAGAATGGGCAGATAC-----CG-TC-TCGAG-------------TCTTGAGGGCGGGATGGTATGTAATagg
gi|12 : AA---GAGA--GA-GAGCA--TGTGACAAAACTCTT-GTGCCTAC--ACCTTTAGGTACTCTTATAAAGGTATAAAGT-GG-------------ATAGCATAAGATACA-GAATA-GAATCCACAGACTTTGTATGGAGGCTGCATCAGAATTCTTGCATAATG--ATTTCATCATTtttgaggtaaatgacttttgaggatctttccttgtttt
gi|13 : aaaacatccttttaacagatagctttgcttttaaatactctactctgttttggaatgctgtgggagATGATGGTAG---CTTCATAGCATATGGACATGCAGAGATGTAGGTCAATCAATT-CTGAGATTTGCTCCGTGGGGTGCCCAATGGCACACACTATGGG-TGACCAGGCACACCCTCCTT--GTGGATTTTAGGCAGTAGATAGAATTGCCCA-GGTATATACAGTTGAG--AGGAAGCAATGTTTCAAAGACAT--TTTCACCAATTTCCTCGTCTTTGT-----------AGAGTTTCACTGATGGTGGCAGAAAACGCT--TTattgagattaacaaaattgggaacattttcaag
gi|14 : aaaA--CAGTTGAG--AGGCAGCAATGTTTCAAAGACA-------ACCAATTTTGTCATCTTTGTACATCTGCTTAAGAGTGTCGGTGATTGTGGCAGAAAACGTT--TTGGTAGGGTCGGAATCCAG-T-------T-TAGTGTAAAACCGTTCATCCGAGAGTTGTCTATGCGCTTCCTCTA--TATG-TTGTCTTGTCTAATACCACCACTGTTAACg
gi|15 : TAGTATGGAGGCTG------AATTTT--------A--ATTTCACCATTCCAGAATGTG---GAAGTG----GTATCCGAGAATACGTTCTTGGAGCTAGAAATTTC---------CA---------CTGTAAATTTTATG--GAA---TGATGAAATGAGT---TAG-TTAAGGA----A-----ATAAAGTTTTCAAGTTTATCTCG-GCCCTCCGTCCATTTCATCTCAATGGCATCAATGAAATGCAACTAACTATGGGGaatgtcatactggttttatcaaaatgtc
gi|17 : acaagtgtgaataGTG---GAAGTG----GTATCCAAGAATACGTTCATGGAGCTGGAAATTTC---------C--------------------------------------AATG----------------------------TAA---TCT---GTCTATTTTC-GCCCTCCGTCCATTTCACCTCAATG---------AAACGCAACCAATTATGGGGTTTAAA-GG-AAGTTGTCTGAGC-AAGTT-----------TTCCAATGAAAATGCGGGGATACGATGGAGTCATCTTCGTTCCCATAGCTATGCCACTTACTTGTAAGTAATGTTC
gi|18 : aTCATGTTTCT--GT-TGCCTCTGAAGGATG-TCATAGTGGGGGTCTTTGAA--AACATAAGACGTTCATTTGTCGGCCTACTGAATGGGTAGACAT-----TT-TC-TCAGAATGCATTTGAAATACTTGAGGGCGGGATGGTAAGCAGT
gi|2 : atcagtattgaATTGTATGAGG-ATGTTGCGTTCAAGTCTTCCCATGAAAATGTTGGCATACGATGGAGCCATCTTTGTTCCCATAGCTGTGCCACT----TGTAAGTAATGTTCTCCGTTGAACATGAAGTTGTTGAGTTTGATGATATGT--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTG---GGGCCTTGTTATTCCAACCCTCTCTGCAGGCTTCAATGCCTTCCATCATAGGGGATGTTCTTATAAAGTGAAGTCACATCCCTGGTCACAAGAAGAATATTGTCAGGTAGGTTGGAAGAAGGGT--TTTTG--TTA-TGGTAGCTAGTA-----------GTATGATGGTAG---CTTTACAACATGTGGTCG----GAGATGT---CCAATGAttgtcattttgaggttttctctgtattgtttga
gi|2 : GAGATGTCCAATGACACC----ATGGGACGGCCAGGCATACACTCT------G---TTTAGGGGGTAGATAAAATTGTCCA-GATCTA--CAGTTGAG--AGAAAGCAGTGATACAAAGACAT--TGTCACCAAGTTCCTTGTCTTTGTACATCTGCTTAAGAGTTTTTGTGATGGTGGCAAAAAACGTT--TTCGTAGGGTTGGAGTCCAG-T-------TA-AGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGTGCTTCTACCATGTATG-TTTCCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTTGTTA--ACAATGTCATC-CTG---GTCTTTT---AGC--TTTTGTAAGACTGAC-CT---TTCTTTCCTTAGATTGTCCTGGAACC-TTGCTGTTTTGTCAAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTGGATGTAGGACTCGAGGGCTGCACATTTTACTGATGGAGGTTCCAATTTGCTCTTAGTTC----GGTAG-AGTTTcaccatgggacggccaggcatacactctgtttagggggtagataaaattgtccagatctacagttgagagaaagcagtgatacaaagacattgtcaccaagttccttgtctttgtacatctgcttaagagtttttgtgatggtggcaaaaaacgttttcgtagggttggagtccagttaagtgtaaaaccgttcatccgagagttgtctgtgtgcttctaccatgtatgtttccttgtctaataccaccactgttgaccctttgtctgcctttttgttaacaatgtcatcctggtcttttagcttttgtaagactgacctttctttccttagattgtcctggaaccttgctgttttgtcaagtagtttttcgatgtcctgctcaactgcttggatgtaggactcgagggctgcacattttactgatggaggttccaatttgctcttagttcggtagagttt
gi|20 : attgtatgaggatgttgcgttcaagtcttcccatgaaaatgttggcatacgatggagccatctttgttcccatagctgtgccacttgtaagtaatgttctccgttgaacatgaagttgttgagtttgatgatatgttcaaggagcttgaccaacgattctgtggaaggaatttgtggggccttgttattccaaccctctctgcaggcttcaatgccttccatcataggggatgttcttataaagtgaagtcacatccctggtcacaagaagaatattgtcaggtaggttggaagaagggtttttgttatggtagctagtagtatgatggtagctttacaacatgtggtcg-G--GCTTGG-TTGCCTCTCTTGCAC--GTTTTTTTTT--GATGG-ATGCTCTTGTTC-TT-A---TA-----GAAAGTGCAGA--GTAGAGCAGATATGGCGTA-CTTG--GTGGCTAA--ACCTTTAGGTA-----TTG--GGTA-GA-----A-TGGCAA-C-TAGATGGCATGGAAT-TATAAA
gi|21 : a-G--GCTTGG-TTGCCTCTCTTGCAC--GTTTTTTTTT--GATGG-ATGCTCTTGTTC-TT-A---TA-----GAAAGTGCAGA--GTAGAGCAGATATGGCGTA-CTTG--GTGGCTAA--ACCTTTAGGTA-----TTG--GGTA-GA-----A-TGGCAA-C-TAGATGGCATGGAAT-TATAAAatacatcacgaggcagccgagt
gi|22 : aT---------TTTAATG-GTAGACC----GGTGGTTATAGATCTTTCAACATAGATACCCTAGTTTCACCTACGTAGCG----TTGGTCACAAACTTTGCAACTTTTAAGATAGATACAGTCGTCCGTGCGACA-GGATGTGTCC-TCAAGGA--TTATAATATAA-GCCAGTGGCAGGGCTatacatcacgaggcagccgagt
gi|24 : tcTTTTTCCT-GTCTT-TTC-CTCTCTGCATCGGTCCATGTT-GGGTTATA-ATCGATAAT-----CACCACCTGCATATC-Tct
gi|25 : atgcgcacgaaatcattcagtttgttcattccatctgggcggaatgatttcaagcgatgcatctatgaACATATAGATGGCAGTTAGCAGTTTTGGCGTGGAGCCTG------AACTC---------G--ATATTTCCGTTAACGACCTTA---GACGTG----CTGTCTAGAAAGACGATAGTGGATGTGGAAAT
gi|27 : aggaggatggcgggattagatatAGGCGAATTTGGTGTTGCAGGT-CCAATAAATGTAATTTTAATTTA-GGGTAACCATTCGGGTCCTTAAGGTGTGACGGTAAATCCTTTACA---TGCTGACG----GGG
gi|28 : tgaaagttcaataattatcCTTTA-TAGCCTCTCTTGCACACATGGTTTTTC---ATGG-TAATT-TTGTTC-TTGA---TAA---AGTGC---AAGATTG--AAACAGATGCGATGGA-TTCGA-AGGGCTAAGTACTCTCAGGTATTCCTTTg
gi|29 : TGGGATGTCCTGTAGCAATGACTATTGGACTTCCATGCATGTTTTTTTTTTATGAATTTTAGGAATTAAGTAAA-TTTTCCT-GATCTA--CAGTCG
gi|3 : TGAAACCCCCGATAGGTAGTGGGTTATCCAGCCTAGTTCTGACTACAATGTTCTTTAAATTTCTAGGT-TG--TCTGAAGGCCT-CCATTG-CAGGGTCTTTAAA--GACCCTAGCTATTCTTTCGTTGTTATATAGAATAGGTAAATGG-----CT-TT-TAAGGATGGTATTGAAGTTCTTCAGTGCGGGGTAAAATGTAGTCACTAAGGGGA---CT-CTATTGCCT-T-CTTCTTT-CTGTTTATATAGAAGCAGGGAGTTTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGGTTGTAC--TGGA-GCAGCTCTA-AAGCCTCTTTTACATAGGTGACTTTTCAGGA-GT-TTGCT-TTGTTT-TG-AGTTTAATTTCGTGA---CAGA--G--GAACAGATACGACAAA-CTTGT-GTTGCTAA--ACCCTTAGGTACTCCTTTGAAGATATGAGGTGGG-TAACAGCC-T-GAAGGCAT--CACATACCAGTGTGAGTCAGTGGGTTTTGTGCGGTGGCTG------AATTC---------A--ATTTCACCGTTCATGAGAGTGATCGAAGTGGTAAGTATCCAAGAATACGTTCTTGGAGCTTGAAATTTC---------CT---------T-----------TG--TAAATTTAATGAAATGAGGAAATGG-T-----A----AAGGAGATAAAATTTTCAAGTCCATCTCG-GCCCTCCTTTCTTTTCAACTCAATGTCATCTTTGAAACCCAACCAACTATGAAGTTTAAA-GGCCGATTGTCTGAGTAAAGTTGCATTCAACTGTTCCCATGAAAATGTAGGCATACTATGGAGCCAttggaacaaagcacttc
gi|30 : TCAATAAC-----CACCACCGTCATGTC-TTC----CCAT----------
gi|31 : ACGTTTTTCAGATTTCCTGGG-CG--TCTGAAAGCCA-CCATGG-ATGGTTCTTTGAA--GACCATGGCCATTCTAGAGGTAATGTGAAGAGTGGGAAAATG------CT-TC-Tgcatatgagtgtccctcgagatgaaaatgctcggcgacgggttcttggacccttttggttcttatggtagaccgatga
gi|33 : ttcagGTTAATGAATTTCTGGGATTTTTTCCGTGGGGTGTCCG-------TCA------GACACCCTGACATGGCTGTTTT--GTGTATTTCGGGTAGCAAATAAAATTGTTCA-tc
gi|34 : TG-ATCAATAACAAACTCATGAATGTCATCCCATTCAGGACCAT----------T----------GAGGCTGAGACGTTCC----------ATAA--------C-----TGGTTGT---------TTTGACG-GTGGATC----GGcttc
gi|35 : agaatagTTGTCTGC-----TTTT-TTATGACTATGTCGTCACCGGTTTTTTTTT---AGCAATT---GGAGGACAGCTCTCTCTTCTTTGCTGAGATTGTCT-G
gi|38 : ACAATGGGGCGGCCAGGAATATTCTGTTT--GTGTATTTTAGGAAGCATGTAAAATa
gi|39 : ctactgcagatTCAATAAT-----CACTACTGTCATGTC-TTT----CCAT----------
gi|4 : aAGAATTATG-GTCAATTAC-----CACTACTGTCATATC-CTC----CCAT----------CTGTGACCATTAAGATTGAGGTGTTCC----------CCGACGGGCTCTT-----TG---GTTCTTTTTGTCCTAATG-GTGGATC----GGTGGTTGTTTATTCTTTGGCGGATGTCACCC-GTTTCTCCAACATATTGC-TTTGAG---CAAACCTTACAATTGA---GATACACACAGTTGTCTGTGTGACA-GGACAT-GTTACCCAATATTTTGTAGATGCG-ACCAGTAAC-GGGCTAGTAAATTTGTCAG----T----GC------TGTGCTTACACAAAAGGCATC--T--GGCA--TCGGA--ACAAGTTTTAAAACCACCATTGGGTAATGGGTTGTCTAATTTCGCTCTCACTACCATGTCCTTT----TCCTAGGC-CG--TCTAAATGCAG-CCATTG-GTGGATCCTTGAAAAGATCC--GTCATTCTTTTATTATTGTGAAGAATATGTACATGTAGATTCTCTC-TCAGGATGCTGTTAAAGTTCTTAAGGACGGGGTGAAATGTTGTGAC-ATGTGGAACCCTACTATTGTCT-TTCTTCTC-----ATTGTATTGAAAAAGGGTTTCCCTGTT-CTTTGTGGTTATCTCATCAATTGCGGATTGCACTGTGTG-G--GCTTTG-TAGCCTCGATTACACAGATGttgttgaatgcaaaattaaaatgctcggtgac
gi|40 : gCAGGTTTTAAAGCCATCATTGGGTAAAGGATTTTCCTACTTGGTTCGAACCACCATGTCTT
gi|5 : G--TCTGAAGGCTG-TCATGT-GTCGTTCTTTGAA--GATCATGGCCATTCTAGGGGTAATGTGAAGAGGGGGGAAAT-A-----CT-TCTTCAGAATTTTGTTCAAATCTTTTAAGACAGGGTGGTACGTAGTGACCACTGGGA---CT-ATGTCACCTAT-CGATTCG-T-GTTTGTATTGTAGTAGGGATTCTCTGTCGTGTTCT-GACATCTCATCAACAGCTGCTTGCACT-TTGG-G--GGTTTGATAACCTCTCTTGCACAGATG--TTTTA--GATGG-GTGCT-CTGTTCTTT-A---TGA---AGT-G---CAGAGTG--GAGCAGGTACGACGGA--TTGTGGTGGCTAC--ACCTTTAGGTACTACTTTGAATGTATCAGTA-GGATGACAA-C-T--ATG-------AGATACAAATTTGAGTCAGTCGGTTTGGTATGGAGACTG------ATTTC---------AACATTT--CCGTTAAAAATCTTG---TTAACA----G-A---AAAAAGACGTTACTGGATGTGGAAATATCAACAGTTAACA---------TGA---------TC--AAA---TTATGGAATGAGT---TGGCT-----AGTTTA-----ATAAAGATGTCAAGATT-TCTCATACTTTTTACCCACTTCGTCGCAAT
gi|6 : AATT-CAGATAATCTCTCCGTGGGATGTCTGATGGCACTGACAATGAGTCGACCAGGCACGCCTTCTTT--GTGAATTTTAGGGAGAAAATAAAACTG-CCATGGTCTG--CAGTC-AGCCGGACAG-AGTGCTTCGTAAACGTAGTCTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTCCTCTGTGGGGTCTGAATTCAGCT-------TCT--TGTAATACTGCTCATCAGATAGCTGCCTGTTGGCTTCAGCTACATACGATTCTCT-GTCTAGAACAACTACTGTAGACCCTTTGTCTG----CTTTCT-TTACGACAATATCGTC-ACG----GGTTTTGAGAGA--CT---GAAGGGCAGCTCTCTCTTCCTTGTTGAAGTTATCC-GAAATA-TA-TGG--TCGTTGAGACAGGATATCTTCGATATTAGACTGC---ACTGCGTAGATATAAGATTCCAAGGCCCCACATTTTTCAAGTGGAGGTTCCCAGGGATTCTTAGGCTTACAAGTAG-AGTTTcaacttacagacc
gi|7 : CCAACAAAATATTCTTGAAGTTGGAAATTTC---------CACCGTGAACCT-----------TGTAGAA---TAATGGAAAGAGT---TTG-C-----A----GTCATGATAAAGTCATAGAGGCTTTCGCG-ACTTTCAAACCACTTCATTTCAATGTTATATGTGAAATGTAGCCAACTACGAGGTTTA-------GATAG--TGAAT-GA-TTCCATT---ATCTT--TATAAAA-------CCCAAAATGGTGTAATTTTTGTTCTCATAGTTGTGCCACTGATTTACAGATAATATGAGTCCAAGAA-GCTAAGTGATTCAGTTGAAGAACATTACCTCAAG
gi|7 : ATGTATGTGTAAAGTGAAATAGTATCCATGGTCACAAGGCGAGTATGGTCTGGCGGGGTTTAATATAGGT-----------ACATGTAATCAGATGTGTTCTTCAGGTATGACGGTAA---ATCGTCTATGTGCTGACG----GAGATGCAAGTCATTGAATT-CAGATATTTTATCTTTGGGGTGTCtgtaatgtatgtgtaaagtgaaatagtatccatggtcacaaggcgagtatggtctggcggggtttaatataggtacatgtaatcagatgtgttcttcaggtatgacggtaaatcgtctatgtgctgacggagatgcaagtcattgaattcagatattttatctttggggtgtc
gi|8 : ccaacaaaatattcttgaagttggaaatttccaccgtgaaccttgtagaataatggaaagagtttgcagtcatgataaagtcatagaggctttcgcgactttcaaaccacttcatttcaatgttatatgtgaaatgtagccaactacgaggtttagatagtgaatgattccattatctttataaaacccaaaatggtgtaatttttgttctcatagttgtgccactgatttacagataatatgagtccaagaagctaagtgattcagttgaagaacattacctcaagtgtaCAATGAAATTTAC-ACGAGTATAGGTTGTGAAGAGAGGCGAGGAGTAAAGTCTGGT-GGGCTTAACATACGTTCATTCT-GCAAAGTCATTCGATTTTATTCAATTGCCATTTT
gi|8 : ATTTTCTC-TTGTTTT-TTCGTTTCAAGAGTCACTCCA-GTTAGGGTT-TGCGTCAA-AAC-----TACGACTGTCCT-TC-TTC----CCATTTGTAACCCTC----------TAGGTTGAAATGTTCCCAACGGTTCGGTGA--------TCCGTTTG---GT---------CTTAATAAGTGA--C----GGTGATTGTTGACTCTTCT-CGGAG-TCACCT-GTTTCACCTACGTACTGCTTTTTGG---CATTTCTTACAACCGATAAGGTAGAT-CAG-TG-CAGTACGGCAGGGACATAGCT-CCCAAAATTTTGTAGCTCTGTTCCTGTCACCGGGCTGCTGAAAGTGTCAG----T----gaggccgaaatgactttaaatctgtgcatcagaattttctcttgttttttcgtttcaagagtcactccagttagggtttgcgtcaaaactacgactgtccttcttcccatttgtaaccctctaggttgaaatgttcccaacggttcggtgatccgtttggtcttaataagtgacggtgattgttgactcttctcggagtcacctgtttcacctacgtactgctttttggcatttcttacaaccgataaggtagatcagtgcagtacggcagggacatagctcccaaaattttgtagctctgttcctgtcaccgggctgctgaaagtgtcagt
gi|9 : caatgaaatttacacgagtataggttgtgaagagaggcgaggagtaaagtctggtgggcttaacatacgttcattctgcaaagtcattcgattttattcaattgccattttgaggccgaaatgactttaaatctgtgcatcagaTCTCCTTATTTT-TTC-TTTCCA-TATTGGTCCA-GTGCACGTTTTG-GTCAATAGC-----CACTACTGTCATGTT-TTC----CCATTCATGTCCTGC----------GAGATCGAAATGCTCT----------GCAA--------C-----TG---ATT--------CTT------TCAACCATTTGGTAGTTATTGATCCTCCTACGTAAGTCTCCT-GTTTCATCTACGTATTGT-TGATCA---CAGAGCTTACAGTTTATGTTGGAAATGCAATTATCCGTGCGACA-GGCTGTTTCC-CCCAGAATTCAGTAGTGTCA-ACTTGTGACAGGACTCTTAAAACTGTTAC----TTCTAGC----GCTGTGTTTGCATATCGGGCATC--TACC--A--TCAGA--ACATG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TGGTGATAGACTCGCAGACAAAAAAATGAACGGCAACCCCCAACCCCCCCTCCCCCCCTCCAGAACAACACCTAATATTAACCACGAGTCAGAAACTATGTCACATTCATTTGTTTGTGTCATGTCATTGGAGGCAATGACCTCCAACCTAATACTGATAGGCATCCAAAACTTCTTGGAGCCTTTTTCGTTGTCTTGTCGCAATATCGACCCAGT
Unaligned ( gi|19 ): GGTGAAGTCATTTAAGTTTATTCAAACCATCAGGGCAAAATGACTTCAGTCTACTTTGTCCAGAACTTCTCCTTGCCTATTCTCTCTGCATCAGAGAGGCATCTAGAGTCGTGATCTGTCATATCCTTCCATCTATGGCCATTAAGGCTGAAGTGATCCCCAACAGATTC
Unaligned ( gi|23 ): ATATTGCTCTAATGAACTGGTAATGGTTTAGCCCGTTGTCATCTTGGAAAAGTCATAGAGTTTGTTAATACCTTGATGTTCGAATGACTTCAGCCTATGCATTTAGAATTTCTCCTTTCGTTTTCTTTAAATATCTGACCA
Unaligned ( gi|26 ): GACTAGGACTGTCGATGAGATTCTCGGTGCTAGAGTTGTGTTTGCGTGATTCTAGACATCCTGATATCAGTATGTTAAAACTGCCTCCATTTAAGCATTAAATTGTTAAGTCTAGTCTTCATCA
Unaligned ( gi|32 ): AGCAAAGTAATTGAACTATTTTAAACCATCATGGTGAAATTACATCAGCCTGTGAATCTTCTCTTCTTCATCTCTGCAAAAGACTATCTAGACTCGTGAT
Unaligned ( gi|36 ): TCATTCTATTGAAATTTCTGGTATTTTTCCTGCCATAGGGGCGGAATGATTGCAATATATGCATCGATCAAGGAATGTTAT
Unaligned ( gi|37 ): ATGATGATGCTCAAACAAAGAATAAATGACAAAATCCCCCACAGAACAACACATAGTATTAACTAGGCGAAGCTAGACCAC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 11 1 1 1 11111 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111 1111 11 222 11 6666666666666666 222222222 11 1111111111 111 111 11111111 222222 1 11 111 1 11111 555555555555 22 11 3333333333333333333 222 111111 444444444444 111 1111 1111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111 1111 1 1111 222 222 5555555555555555 1 222222222 11 111 222 1111 11 11 111 11 4444444444444 11 1 22222 1 11 1 3333 111 33333333 1 2 1111 1 2222 222 2222 1
lowQualScore : 5 1 5 1 1 5 1 5 88 6 3 0 0 9999 1 0 5 9 6 22222 1 3 5 2222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 66666 2222 1 00 3 1 8 77 333 1 0 3 77 9 6 7 00 1 1 77 4 1 1111111111111111 4 3 22 444444444 1 11 1 1 1 0 0 1 0 1 2 33 8 99 66 0 5 1 5 1 1 66 999 1 1 1 1 2 8888888888 5 000 3 11 3 0 33 0 3 1 8 444 44444444 8 888888 1 1 1 0 1 6 0 1 1 1 33 0 6 99 5 55 7 000 3 77 3 6 33333 444444444444 77 11 1 5 44 77 6 0 7 7 5555555555555555555 222 7 2 5 1 1 999999 333333333333 3 1 44 111 4444 1 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 1 3 6 3 5 77 5555555 0 8 5 1 4444 0 3 0 0 77 9999 2 111 111 1 6666666666666666 5 0 0 0 0 0 1 1 1 555 1 1 222222222 11 666 0 2 0 444 1 333 3 7777 33 8 1 33 1 7777 6 1 77 6 1 1 6 11 0 11 111 3 1 2 0 0 1 11 1 11 1 1111111111111 1 0 00 00 0 1 3 66666 0 00 0 6666 1 777 11111111 1 5 2 1 0 0 7777 7 0 0 3 2222 333 7 1 1 0 1 1 8888 3
lowQualScore : . . . . . . . . .. . . . . .... . . . . . ..... . . . .... .................................................................................................. ..... .... . .. . . . .. ... . . . .. . . . .. . . .. . . ................ . . .. ......... . .. . . . . . . . . . .. . .. .. . . . . . . .. ... . . . . . .......... . ... . .. . . .. . . . . ... ........ . ...... . . . . . . . . . . .. . . .. . .. . ... . .. . . ..... ............ .. .. . . .. .. . . . . ................... ... . . . . . ...... ............ . . .. ... .... . . ............................................................................... . . . . . . . .. ....... . . . . .... . . . . .. .... . ... ... . ................ . . . . . . . . . ... . . ......... .. ... . . . ... . ... . .... .. . . .. . .... . . .. . . . . .. . .. ... . . . . . . .. . .. . ............. . . .. .. . . . ..... . .. . .... . ... ........ . . . . . . .... . . . . .... ... . . . . . . .... .
lowQualScore : 5 0 0 0 0 5 0 0 00 5 2 0 0 8888 0 0 6 0 7 55555 0 4 0 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111 1111 0 00 2 0 0 77 333 0 7 5 00 3 7 5 88 0 0 77 9 0 7777777777777777 6 2 44 222222222 0 00 0 0 0 7 3 5 3 0 3 44 7 33 99 2 0 0 0 0 0 99 444 0 0 0 0 8 9999999999 0 000 0 77 0 4 44 3 8 0 8 000 22222222 0 666666 4 4 0 6 4 0 8 4 4 0 22 2 7 22 7 77 5 222 2 77 3 7 33333 444444444444 99 44 0 7 44 99 6 7 3 3 0000000000000000000 000 1 3 6 4 0 222222 222222222222 7 0 22 777 2222 6 3 2222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 0 5 7 7 6 88 2222222 8 0 0 4 6666 8 8 8 2 33 0000 5 555 000 0 5555555555555555 0 7 7 7 7 7 0 0 0 222 0 2 000000000 22 555 2 5 2 000 0 222 2 0000 55 0 4 88 0 1111 0 7 99 6 0 7 7 00 7 00 888 8 4 8 4 8 0 44 0 00 0 8888888888888 2 2 55 88 0 0 2 55555 0 88 0 8888 0 555 22222222 0 5 5 0 8 0 3333 3 7 7 3 7777 333 3 0 0 7 0 0 3333 3
consensus : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCGAGGNGTAAAGTCTGGTGGGGCTTAGCNCANGTTCATTCTAGCAAANTCATTCGATTTTATTCAATTGCCATTTTCTCCTTGTTTT-TTC-TTTCCAGNGTCGNTCCA-GTTAGGGTTATG-GTCAATAAC-----CACNACCGTCATGTC-TTC----CCA----------------T----------C----------GAGATCGAAATGTTCC----------GCGA--------C-----TG---GT---------CTTAATG-GTGGACC----GGTGGTTGTTGATTCTTCTACGGAGGTCACCT-GTTTCACCTACGTACTGC-TTTTGG---CANACCTTACAACCGATAAGGTAGACGCAGTTGTCCGTGCGACA-GGACGTNGCT-CCCAANATTTTGTAGCTNCG-NCCTGTGACAGGGCTGCTGAAANTGTCAG----T--GC---C---GCTGCGTTTGCACATNAGGCATC--TG-CA--TCNGA--ACANGTNTTGAAACCNCCGTTGGGTAATGGGTTATCCAGCCTAGTTCTAACTACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATNG-GNGGNTCTTTG--AAGACCCTAGCCATTCNTTNGTTGNTGTGNAGAATGGGNAAATG-----NCT-TC-TCAGGATGNTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCG-CCT-TCTTCTCT-C-GNTTATATTGAAGNAGGGATTCTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGNTTGCACT-TGGG-G--GCTTTG-TAGCCTCTCTTGCACAGGTGNTTTTTC--GATGG-NTGCT-TTGTTC-TT-A---TAA--C-GNAA---CAGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCCTTAGGTACTCCTTTGAAGGTATGAGGT-GG-TGACAA-C-T-GATGGCATGGNATATATAAATGTGAGTCAGCGGGTTTNGTGTGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANCGTG---GAAGTG----GTATCCAAGAATACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----ATAAAGTTNTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAA-GG-CGATTGTCTGAGT-AAGTTGCGTTCAAATCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCACTNACTTGTAAGTAATGTTCGCCGTTGAACGCGAAGTTATTGAGTTTGAGGACATNA--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTGTCAGGGCCCTGCTATCCCAANCCTCTCTGCAGGCTTCAATGCCTTCCATCGTGGGGGATGTTCGTGTAAAGCGAAGTCGTATCCATGGTCGCGAGGNGAATATNGTCNGGCAGGTTNNAANAAAGGT--TTTTG--TTA-AGGTAACCAGTNGTGTCCTTCAGGTATGACGGTAG---CTTNACAACGTGCGGACG----GAGATGTAGGTCAATGAATT-CTGAGATTTTCTCCGTGGGGTGTCCGATGGCACTCACTATGGGACGGCCAGGCATGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GG--TCTACAGTCGAG--AGGCAGCAATGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTNTCGNTGATNGTGGCAGAAAACGTT--TTNGTGGGGTCGGAGTCCAG-T-------TNTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCCGCTACGTATG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CCG---TTNTTTT---AGC--CT---NAAGGNCAGCTCTCTCTTCTTTGCTNAGATTGTCC-GGAATA-TT-CTGTTTCGTCGAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTNGATGTAGGACTCGANGGCCGCACATTTTNCTANTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAG-AGTTT
Reference ( family-3283 ) : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCGAGGNGTAAAGTCTGGTGGGGCTTAGCNCANGTTCATTCTAGCAAANTCATTCGATTTTATTCAATTGCCATTTTCTCCTTGTTTT-TTC-TTTCCAGNGTCGNTCCA-GTTAGGGTTATG-GTCAATAAC-----CACNACCGTCATGTC-TTC----CCA----------------T----------C----------GAGGTCGAGATGTTCC----------GCGA--------T-----TG---GT---------CTTAATG-GTGGACC----GGTGGTTGTTGATTCTTCTACGGAGGTCACCT-GTTTCACCTACGTACTGC-TTTTGG---CANACCTTACAACCGATAAGGTAGACGCAGTTGTCCGTGCGACA-GGACGTNGCT-CCCAANATTTTGTAGCTNCG-NCCTGTGACAGGGCTGCTGAAANTGTCAG----T--GC---C---GCTGCGTTTGCACATNAGGCATC--TG--A--TCNGA--ACANGTNTTGAAACCNCCGTTGGGTAATGGGTTATCCAGCCTAGTTCTAACTACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATNG-GNGGNTCTTTG--AAGACCCTAGCCATTCNTTNGTTGNTGTGNAGAATGGGNAAATG-----NCT-TC-TCAGGATGNTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCG-CCT-TCTTCTCT-C-GNTTATATTGAAGNAGGGATTCTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGNTTGCACT-TGGG-G--GCTTTG-TAGCCTCTCTTGCACAGGTGNTTTTTC--GATGG-NTGCT-TTGTTC-TT-A---TAA----GNAA---CAGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCCTTAGGTACTCCTTTGAAGGTATGAGGT-GG-TGACAA-C-T-GATGGCATGGNATATATAAATGTGAGTCAGCGGGTTTNGTGTGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANCGTG---GAAGTG----GTATCCAAGAATACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----ATAAAGTTNTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAA-GG-CGATTGTCTGAGT-AAGTTGCGTTCAAATCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCACTNACTTGTAAGTAATGTTCGCCGTTGAACGCGAAGTTATTGAGTTTGAGGACATNA--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTGTCAGGGCCCTGCTATCCCAANCCTCTCTGCAGGCTTCAATGCCTTCCATCGTGGGGGATGTTCGTGTAAAGCGAAGTCGTATCCATGGTCGCGAGGNGAATATNGTCNGGCAGGTTNNAANAAAGGT--TTTTG--TTA-AGGTAACCAGTNGTGTCCTTCAGGTATGACGGTAG---CTTNACAACGTGCGGACG----GAGATGTAGGTCAATGAATT-CTGAGATTTTCTCCGTGGGGTGTCCGATGGCACTCACTATGGGACGGCCAGGCATGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GG--TCTACAGTCGAG--AGGCAGCAATGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTNTCGNTGATNGTGGCAGAAAACGTT--TTNGTGGGGTCGGAGTCCAG-T-------TNTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCCGCTACGTATG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CCG---TTNTTTT---AGC--CT---NAAGGNCAGCTCTCTCTTCTTTGCTNAGATTGTCC-GGAATA-TT-CTGTTTCGTCGAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTNGATGTAGGACTCGANGGCCGCACATTTTNCTANTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAG-AGTTT
gi|1 : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCAAGGTGTAAAGTCTGGTGGGGCTTAGCTCAAGTTCATTCTAGCAAATTCATT-GATTTTATT--ATTGCCAATTTCTCTTTGTTTTATTC-TTTC-AGAGTCACTCCA-GTTAGGGTTGTG-GTCAATAAC-----TACGACCGTCATGTC-CTC----TTA---------------------------C----------GGGTTCGG--TGATTC----------GT----------T-----TG---GT---------CTTTATA-ATATACC----GGTGTTTGTTGACTCTTCTTCGGAGGTCACCT-GTTTCACATACCTACTGC-TTTTGG---CATTTCTTACAACTGATAAGGTAGGTGCAGTTGTCAGTGCGGCA-GGACGAAGCT-CCCAAAATTTAGTAGCTCTG-TCCTGTCACCGGACTGCTGAAAGTGTCAG----TTGGC---CC--GCTGAATTTGCACATGAGGCATCACTT--A--TCAGA--ACACGTGATGAAACCCCAGTTGGGTAATGGGTTATACAGCCTAGTTCTAACTACAATGTCCTTTATATTTCAAGGT-TG--TCTGAAGGCCG-CCATTG-GAGGGTCTTTA--AAGATCCTAGCCATTCGTTTGTTGTTATGCAGAATGGGCAAATG-----GCT-TT-TAAAGATGGTATTGAGGTTCTTCAGGGCGTGATGAAATGTAGTAACTAAATGGA---CT-CTATTG-CCT-TCTTCTCTCC-GGTTATATAGAAGCAGAGAGTTTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGCTTGTACT-CGAACA--GCTTTA-TAGCCTCTTTTACATAGGTGGCTTTTC--AAGAGTCTGCT-TTGTTT-TT-C---TAATTCCGAAC---CAGA--G--GAACAGATACGACGAA-CTCGT-GTAGCTAA--AACCTTAGGTACTCCTTTGAAGGTATGAGATGGG-TGACAG-CTT-GAAGGCAT--CATGTATAAATGTGAGTCAGCGGGCTTTGTGTGGAGGTTG------AATTC---------A--ATTTTATCATTCAAGAGAGTG---GAAGTG----ATATCCAAGAATATGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGGTGAAATGAGT---TGG-------------------TAAAGTTTTCAAGCCTATCTCG-GCCCTCCTTCCATTTCATTTCAATGTCATCAATGAAACACAACCAACTATGGGGTTTAAAGGG-CGATTGTCTGAGT-AAGTTGTGTTCCAATCTTCCCATGAAAATGTTGGGATACGAATGAGCCATTTTCGTTCCCATAGCTGTGCCACTAACTTGTAAGTAATGTTCGCCGTTGAACACGAAGTTATTGAGTTTGAGGACATAA--TCAAGGAGCTTGACCAATTATTCTGTGGAAGGA---TGTGTCAGAACCCTGCTATCCCAAACCTC----------------CCTT-CATCGTGGGAGATGTTTGTGTGAAGCAAAGTCATATCCATGGTTGCGAGAAGGATATTATCAGGTAGGTTGGAAGAGAGGG--TTTTG--TTA-AGGTAATCAGTGGTGTCCTTCAAGGATGATGGTAG---TTTAACA---TGTAGGCG----GAGGTGTAGGTCAATAAATT-CTGAGATTTTCTCCTTGGGGTATCCAATTGCACTCACTATAGGGCGGCCAGGCATACCTTCTTT--GTGGATTTTAGGCGGTAAATAAAATTGTCCA-GG--TCTACAGTTGAG--AGGCATCAATGTTTCAAAGACAT--TATTACCAATTTTCTCGTCTTTGTACATTTGCTCAAGAGTGTCGTTGATTGTGGCAGAAAACGTT--TTGGTGGGGTCGGAGTCCAG-TTTAGCAGTTTAGTGTAAAACCGTTCATCCGGGACATGTCTGTGCGCTTCCGCTGTGTATA-TTATCTTGTCTAATACCACCAATGTTGACCCTCTGTCTGCTTTTTTTTT-TTATAACAATGTCATC-CCGT--TTGTTTT---AGCT-CT---TAAGGCTAAC-CTCTCTTATTTGCTTAACTTGTCCGGGAATATTT-CTGTTTTGTTGAG-TAG--T-TTTTCAATGTC---CTGCTCAACTAATTCGATGTAGGGCTCGATGGCTGCACATGTTCCTATTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAGTAGTTT
gi|10 : ACTGC-TTCTGATGACAAACTTTGCAACCGAGGAGATAAACAAAGTTATT-----------GAAGTCGC---CTAATATTCTGTAACTACG-GTCTGTGATAGGACTGCTGAAGGTCTCAGGGGGT--AG---A---GTTGTATTTGCA--TAAGATATC--TG--A--GATGATGATAGATCTTAAATCCTCCAATCGGTAATAGGTTGTCCAGTCTAGTCCTCACCAATATGTCCTTTATGTTCCT-GGTGCA--CCTAAGGGCAGTCCGTAG-GTGGACCTTTG------------TCATTCGTTGGTTCTTGTGTAGAATAG--AAATG-----A-------CAGGATGGT----AAG----------------------TGGTGACTAAG-GGA---CC--------CCT-GCTTCTCT-C----TACATTGTAAAATAGATCGTCTGTCTTGTTC-GGTTAACTCATCAACTG
gi|11 : CCTGTGATAGGACTGTTCAAACTTTCAG----T--GT---CTGAGCTACATTCGCACAATTGATGTC--TG--AGGTCTGA--GCATATGTTGAAACCTCCATTAGGTAAAGAATTATCCAGTCTATCCCTAACATCCATGTCCTTTAGGTTTCTAGG--CG--TCTGGAGGACG-GCATAG-GGGACTCATTG--AAAACATCAGCCTTTCATTTATTGGGATGCAGAATGGGCAGATA-----CCG-TC-TCGAG-------------TCTTGAGGGCGGGATGGTATGTAATagg
gi|12 : AA---GAGA--GA-GAGCA--TGTGACAAAACTCTT-GTGCCTAC--ACCTTTAGGTACTCTTATAAAGGTATAAAGT-GG-------------ATAGCATAAGATACA-GAATA-GAATCCACAGACTTTGTATGGAGGCTGCATCAGAATTCTTGCATAATG--ATTTCATCATTtttgaggtaaatgacttttgaggatctttccttgtttt
gi|13 : aaaacatccttttaacagatagctttgcttttaaatactctactctgttttggaatgctgtgggagATGATGGTAG---CTTCATAGCATATGGACATGCAGAGATGTAGGTCAATCAATT-CTGAGATTTGCTCCGTGGGGTGCCCAATGGCACACACTATGGG-TGACCAGGCACACCCTCCTT--GTGGATTTTAGGCAGTAGATAGAATTGCCCA-GGTATATACAGTTGAG--AGGAAGCAATGTTTCAAAGACAT--TTTCACCAATTTCCTCGTCTTTGT-----------AGAGTTTCACTGATGGTGGCAGAAAACGCT--TTattgagattaacaaaattgggaacattttcaag
gi|14 : aaaACAGTTGAG--AGGCAGCAATGTTTCAAAGACA-------ACCAATTTTGTCATCTTTGTACATCTGCTTAAGAGTGTCGGTGATTGTGGCAGAAAACGTT--TTGGTAGGGTCGGAATCCAG-T-------T-TAGTGTAAAACCGTTCATCCGAGAGTTGTCTATGCGCTTCCTCTA--TATG-TTGTCTTGTCTAATACCACCACTGTTAACg
gi|15 : TAGTATGGAGGCTG------AATTTT--------A--ATTTCACCATTCCAGAATGTG---GAAGTG----GTATCCGAGAATACGTTCTTGGAGCTAGAAATTTC---------CA---------CTGTAAATTTTATG--GAA---TGATGAAATGAGT---TAG-TTAAGGA----A-----ATAAAGTTTTCAAGTTTATCTCG-GCCCTCCGTCCATTTCATCTCAATGGCATCAATGAAATGCAACTAACTATGGGGaatgtcatactggttttatcaaaatgtc
gi|17 : acaagtgtgaataGTG---GAAGTG----GTATCCAAGAATACGTTCATGGAGCTGGAAATTTC---------C--------------------------------------AATG----------------------------TAA---TCT---GTCTATTTTC-GCCCTCCGTCCATTTCACCTCAATG---------AAACGCAACCAATTATGGGGTTTAAA-GG-AAGTTGTCTGAGC-AAGTT-----------TTCCAATGAAAATGCGGGGATACGATGGAGTCATCTTCGTTCCCATAGCTATGCCACTTACTTGTAAGTAATGTTC
gi|18 : aTCATGTTTCT--GT-TGCCTCTGAAGGATG-TCATAGTGGGGGTCTTTG--AAAACATAAGACGTTCATTTGTCGGCCTACTGAATGGGTAGACA-----TTT-TC-TCAGAATGCATTTGAAATACTTGAGGGCGGGATGGTAAGCAGT
gi|2 : atcagtattgaATTGTATGAGG-ATGTTGCGTTCAAGTCTTCCCATGAAAATGTTGGCATACGATGGAGCCATCTTTGTTCCCATAGCTGTGCCACT----TGTAAGTAATGTTCTCCGTTGAACATGAAGTTGTTGAGTTTGATGATATGT--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTG---GGGCCTTGTTATTCCAACCCTCTCTGCAGGCTTCAATGCCTTCCATCATAGGGGATGTTCTTATAAAGTGAAGTCACATCCCTGGTCACAAGAAGAATATTGTCAGGTAGGTTGGAAGAAGGGT--TTTTG--TTA-TGGTAGCTAGTA-----------GTATGATGGTAG---CTTTACAACATGTGGTCG----GAGATGT---CCAATGAttgtcattttgaggttttctctgtattgtttga
gi|2 : GAGATGTCCAATGACACC----ATGGGACGGCCAGGCATACACTCT------G---TTTAGGGGGTAGATAAAATTGTCCA-GA--TCTACAGTTGAG--AGAAAGCAGTGATACAAAGACAT--TGTCACCAAGTTCCTTGTCTTTGTACATCTGCTTAAGAGTTTTTGTGATGGTGGCAAAAAACGTT--TTCGTAGGGTTGGAGTCCAG-T-------TA-AGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGTGCTTCTACCATGTATG-TTTCCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTTGTTA--ACAATGTCATC-CTG---GTCTTTT---AGC--TTTTGTAAGACTGAC-CT---TTCTTTCCTTAGATTGTCCTGGAACC-TTGCTGTTTTGTCAAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTGGATGTAGGACTCGAGGGCTGCACATTTTACTGATGGAGGTTCCAATTTGCTCTTAGTTC----GGTAG-AGTTTcaccatgggacggccaggcatacactctgtttagggggtagataaaattgtccagatctacagttgagagaaagcagtgatacaaagacattgtcaccaagttccttgtctttgtacatctgcttaagagtttttgtgatggtggcaaaaaacgttttcgtagggttggagtccagttaagtgtaaaaccgttcatccgagagttgtctgtgtgcttctaccatgtatgtttccttgtctaataccaccactgttgaccctttgtctgcctttttgttaacaatgtcatcctggtcttttagcttttgtaagactgacctttctttccttagattgtcctggaaccttgctgttttgtcaagtagtttttcgatgtcctgctcaactgcttggatgtaggactcgagggctgcacattttactgatggaggttccaatttgctcttagttcggtagagttt
gi|20 : attgtatgaggatgttgcgttcaagtcttcccatgaaaatgttggcatacgatggagccatctttgttcccatagctgtgccacttgtaagtaatgttctccgttgaacatgaagttgttgagtttgatgatatgttcaaggagcttgaccaacgattctgtggaaggaatttgtggggccttgttattccaaccctctctgcaggcttcaatgccttccatcataggggatgttcttataaagtgaagtcacatccctggtcacaagaagaatattgtcaggtaggttggaagaagggtttttgttatggtagctagtagtatgatggtagctttacaacatgtggtcg-G--GCTTGG-TTGCCTCTCTTGCAC--GTTTTTTTTT--GATGG-ATGCTCTTGTTC-TT-A---TA-----GAAAGTGCAGA--GTAGAGCAGATATGGCGTA-CTTG--GTGGCTAA--ACCTTTAGGTA-----TTG--GGTA-GA-----A-TGGCAA-C-TAGATGGCATGGAAT-TATAAA
gi|21 : a-G--GCTTGG-TTGCCTCTCTTGCAC--GTTTTTTTTT--GATGG-ATGCTCTTGTTC-TT-A---TA-----GAAAGTGCAGA--GTAGAGCAGATATGGCGTA-CTTG--GTGGCTAA--ACCTTTAGGTA-----TTG--GGTA-GA-----A-TGGCAA-C-TAGATGGCATGGAAT-TATAAAatacatcacgaggcagccgagt
gi|22 : aT---------TTTAATG-GTAGACC----GGTGGTTATAGATCTTTCAACATAGATACCCTAGTTTCACCTACGTAGCG----TTGGTCACAAACTTTGCAACTTTTAAGATAGATACAGTCGTCCGTGCGACA-GGATGTGTCC-TCAAGGA--TTATAATATAA-GCCAGTGGCAGGGCTatacatcacgaggcagccgagt
gi|24 : tcTTTTTCCT-GTCTT-TTC-CTCTCTGCATCGGTCCATGTT-GGGTTATA-ATCGATAAT-----CACCACCTGCATATC-Tct
gi|25 : atgcgcacgaaatcattcagtttgttcattccatctgggcggaatgatttcaagcgatgcatctatgaACATATAGATGGCAGTTAGCAGTTTTGGCGTGGAGCCTG------AACTC---------G--ATATTTCCGTTAACGACCTTA---GACGTG----CTGTCTAGAAAGACGATAGTGGATGTGGAAAT
gi|27 : aggaggatggcgggattagatatAGGCGAATTTGGTGTTGCAGGT-CCAATAAATGTAATTTTAATTTA-GGGTAACCATTCGGGTCCTTAAGGTGTGACGGTAAATCCTTTACA---TGCTGACG----GGG
gi|28 : tgaaagttcaataattatcCTTTA-TAGCCTCTCTTGCACACATGGTTTTTC---ATGG-TAATT-TTGTTC-TTGA---TAAAGT-GCAA---GATT--G--AAACAGATGCGATGGA-TTCGA-AGGGCTAAGTACTCTCAGGTATTCCTTTg
gi|29 : TGGGATGTCCTGTAGCAATGACTATTGGACTTCCATGCATGTTTTTTTTTTATGAATTTTAGGAATTAAGT-AAATTTTCCT-GA--TCTACAGTCG
gi|3 : TGAAACCCCCGATAGGTAGTGGGTTATCCAGCCTAGTTCTGACTACAATGTTCTTTAAATTTCTAGGT-TG--TCTGAAGGCCT-CCATTG-CAGGGTCTTTA--AAGACCCTAGCTATTCTTTCGTTGTTATATAGAATAGGTAAATG-----GCT-TT-TAAGGATGGTATTGAAGTTCTTCAGTGCGGGGTAAAATGTAGTCACTAAGGGGA---CT-CTATTG-CCT-TCTTCTTT-CTGTTTATATAGAAGCAGGGAGTTTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGGTTGTAC--TGGA-GCAGCTCTA-AAGCCTCTTTTACATAGGTGACTTTTCAGGA-GT-TTGCT-TTGTTT-TG-AGTTTAATTTCGTGA---CAGA--G--GAACAGATACGACAAA-CTTGT-GTTGCTAA--ACCCTTAGGTACTCCTTTGAAGATATGAGGTGGG-TAACAGCC-T-GAAGGCAT--CACATACCAGTGTGAGTCAGTGGGTTTTGTGCGGTGGCTG------AATTC---------A--ATTTCACCGTTCATGAGAGTGATCGAAGTGGTAAGTATCCAAGAATACGTTCTTGGAGCTTGAAATTTC---------CT---------T-----------TG--TAAATTTAATGAAATGAGGAAATGG-T-----A----AAGGAGATAAAATTTTCAAGTCCATCTCG-GCCCTCCTTTCTTTTCAACTCAATGTCATCTTTGAAACCCAACCAACTATGAAGTTTAAA-GGCCGATTGTCTGAGTAAAGTTGCATTCAACTGTTCCCATGAAAATGTAGGCATACTATGGAGCCAttggaacaaagcacttc
gi|30 : TCAATAAC-----CACCACCGTCATGTC-TTC----CCATGCATATGAGTGTCCCT----------C----------GAGATGAAAATGCTCG----------GCGA--------C-----GG---GT---------TCT------TGGACC---------CTTTTGGTTCTT
gi|31 : ACGTTTTTCAGATTTCCTGGG-CG--TCTGAAAGCCA-CCATGG-ATGGTTCTTTG--AAGACCATGGCCATTCTAGAGGTAATGTGAAGAGTGGGAAAATG------CT-TC-Tatggtagaccgatga
gi|33 : ttcagGTTAATGAATTTCTGGGATTTTTTCCGTGGGGTGTCCG-------TCA------GACACCCTGACATGGCTGTTTT--GTGTATTTCGGGTAGCAAATAAAATTGTTCA-tc
gi|34 : TG-ATCAATAACAAACTCATGAATGTCATCCCATTCAGGACCA----------------T----------T----------GAGGCTGAGACGTTCC----------ATAA--------C-----TGGTTGT---------TTTGACG-GTGGATC----GGcttc
gi|35 : agaatagTTGTCTGC-----TTTT-TTATGACTATGTCGTCACCGGTTTTTTTTT---AGCAATT---GGAGGACAGCTCTCTCTTCTTTGCTGAGATTGTCT-G
gi|38 : ACAATGGGGCGGCCAGGAATATTCTGTTT--GTGTATTTTAGGAAGCATGTAAAATa
gi|39 : ctactgcagatTCAATAAT-----CACTACTGTCATGTC-TTT----CCA----------------T----------
gi|4 : aAGAATTATG-GTCAATTAC-----CACTACTGTCATATC-CTC----CCA----------------T----------CTGTGACCATTAAGATTGAGGTGTTCC----------CCGACGGGCTCTT-----TG---GTTCTTTTTGTCCTAATG-GTGGATC----GGTGGTTGTTTATTCTTTGGCGGATGTCACCC-GTTTCTCCAACATATTGC-TTTGAG---CAAACCTTACAATTG---AGATACACACAGTTGTCTGTGTGACA-GGACAT-GTTACCCAATATTTTGTAGATGCG-ACCAGTAAC-GGGCTAGTAAATTTGTCAG----T-----------GCTGTGCTTACACAAAAGGCATC--TGGCA--TCGGA--ACAAGTTTTAAAACCACCATTGGGTAATGGGTTGTCTAATTTCGCTCTCACTACCATGTCCTT----TTCCTAGGC-CG--TCTAAATGCAG-CCATTG-GTGGATCCTTGAAAAGATCC--GTCATTCTTTTATTATTGTGAAGAATATGTACATGTAGATTCTCTC-TCAGGATGCTGTTAAAGTTCTTAAGGACGGGGTGAAATGTTGTGAC-ATGTGGAACCCTACTATTGTCTT-TCTTCTC-----ATTGTATTGAAAAAGGGTTTCCCTGTT-CTTTGTGGTTATCTCATCAATTGCGGATTGCACTGTGTG-G--GCTTTG-TAGCCTCGATTACACAGATGttgttgaatgcaaaattaaaatgctcggtgac
gi|40 : gCAGGTTTTAAAGCCATCATTGGGTAAAGGATTTTCCTACTTGGTTCGAACCACCATGTCTT
gi|5 : G--TCTGAAGGCTG-TCATGT-GTCGTTCTTTG--AAGATCATGGCCATTCTAGGGGTAATGTGAAGAGGGGGGAAAT------ACT-TCTTCAGAATTTTGTTCAAATCTTTTAAGACAGGGTGGTACGTAGTGACCACTGGGA---CT-ATGTCA-CCTATCGATTCG-T-GTTTGTATTGTAGTAGGGATTCTCTGTCGTGTTCT-GACATCTCATCAACAGCTGCTTGCACT-TTGG-G--GGTTTGATAACCTCTCTTGCACAGATG--TTTTA--GATGG-GTGCT-CTGTTCTTT-A---TGA----AGTG---CAGAGTG--GAGCAGGTACGACGGA--TTGTGGTGGCTAC--ACCTTTAGGTACTACTTTGAATGTATCAGTA-GGATGACAA-C-T--ATG-------AGATACAAATTTGAGTCAGTCGGTTTGGTATGGAGACTG------ATTTC---------AACATTT--CCGTTAAAAATCTTG---TTAACA----G-A---AAAAAGACGTTACTGGATGTGGAAATATCAACAGTTAACA---------TGA---------TC--AAA---TTATGGAATGAGT---TGGCT-----AGTTTA-----ATAAAGATGTCAAGATT-TCTCATACTTTTTACCCACTTCGTCGCAAT
gi|6 : AATT-CAGATAATCTCTCCGTGGGATGTCTGATGGCACTGACAATGAGTCGACCAGGCACGCCTTCTTT--GTGAATTTTAGGGAGAAAATAAAACTG-CCATGG--TCTGCAGTC-AGCCGGACAG-AGTGCTTCGTAAACGTAGTCTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTCCTCTGTGGGGTCTGAATTCAGCT-------TCT--TGTAATACTGCTCATCAGATAGCTGCCTGTTGGCTTCAGCTACATACGATTCTCT-GTCTAGAACAACTACTGTAGACCCTTTGTCTG----CTTTCT-TTACGACAATATCGTC-ACG----GGTTTTGAGAGA--CT---GAAGGGCAGCTCTCTCTTCCTTGTTGAAGTTATCC-GAAATA-TA-TGG--TCGTTGAGACAGGATATCTTCGATATTAGACTGC---ACTGCGTAGATATAAGATTCCAAGGCCCCACATTTTTCAAGTGGAGGTTCCCAGGGATTCTTAGGCTTACAAGTAG-AGTTTcaacttacagacc
gi|7 : CCAACAAAATATTCTTGAAGTTGGAAATTTC---------CACCGTGAACCT-----------TGTAGAA---TAATGGAAAGAGT---TTG-C-----A----GTCATGATAAAGTCATAGAGGCTTTCGCG-ACTTTCAAACCACTTCATTTCAATGTTATATGTGAAATGTAGCCAACTACGAGGTTTA-------GATAG--TGAAT-GA-TTCCATT---ATCTT--TATAAAA-------CCCAAAATGGTGTAATTTTTGTTCTCATAGTTGTGCCACTGATTTACAGATAATATGAGTCCAAGAA-GCTAAGTGATTCAGTTGAAGAACATTACCTCAAG
gi|7 : ATGTATGTGTAAAGTGAAATAGTATCCATGGTCACAAGGCGAGTATGGTCTGGCGGGGTTTAATATAGGT-----------ACATGTAATCAGATGTGTTCTTCAGGTATGACGGTAA---ATCGTCTATGTGCTGACG----GAGATGCAAGTCATTGAATT-CAGATATTTTATCTTTGGGGTGTCtgtaatgtatgtgtaaagtgaaatagtatccatggtcacaaggcgagtatggtctggcggggtttaatataggtacatgtaatcagatgtgttcttcaggtatgacggtaaatcgtctatgtgctgacggagatgcaagtcattgaattcagatattttatctttggggtgtc
gi|8 : ccaacaaaatattcttgaagttggaaatttccaccgtgaaccttgtagaataatggaaagagtttgcagtcatgataaagtcatagaggctttcgcgactttcaaaccacttcatttcaatgttatatgtgaaatgtagccaactacgaggtttagatagtgaatgattccattatctttataaaacccaaaatggtgtaatttttgttctcatagttgtgccactgatttacagataatatgagtccaagaagctaagtgattcagttgaagaacattacctcaagtgtaCAATGAAATTTAC-ACGAGTATAGGTTGTGAAGAGAGGCGAGGAGTAAAGTCTGGT-GGGCTTAACATACGTTCATTCT-GCAAAGTCATTCGATTTTATTCAATTGCCATTTT
gi|8 : ATTTTCTC-TTGTTTT-TTCGTTTCAAGAGTCACTCCA-GTTAGGGTT-TGCGTCAA-AAC-----TACGACTGTCCT-TC-TTC----CCA----------------TTTGTAACCCTC----------TAGGTTGAAATGTTCCCAACGGTTCGGTGA--------TCCGTTTG---GT---------CTTAATAAGTGA--C----GGTGATTGTTGACTCTTCT-CGGAG-TCACCT-GTTTCACCTACGTACTGCTTTTTGG---CATTTCTTACAACCGATAAGGTAGAT-CAG-TG-CAGTACGGCAGGGACATAGCT-CCCAAAATTTTGTAGCTCTGTTCCTGTCACCGGGCTGCTGAAAGTGTCAG----T--gaggccgaaatgactttaaatctgtgcatcagaattttctcttgttttttcgtttcaagagtcactccagttagggtttgcgtcaaaactacgactgtccttcttcccatttgtaaccctctaggttgaaatgttcccaacggttcggtgatccgtttggtcttaataagtgacggtgattgttgactcttctcggagtcacctgtttcacctacgtactgctttttggcatttcttacaaccgataaggtagatcagtgcagtacggcagggacatagctcccaaaattttgtagctctgttcctgtcaccgggctgctgaaagtgtcagt
gi|9 : caatgaaatttacacgagtataggttgtgaagagaggcgaggagtaaagtctggtgggcttaacatacgttcattctgcaaagtcattcgattttattcaattgccattttgaggccgaaatgactttaaatctgtgcatcagaTCTCCTTATTTT-TTC-TTTCCA-TATTGGTCCA-GTGCACGTTTTG-GTCAATAGC-----CACTACTGTCATGTT-TTC----CCA----------------TTCATGTCCTGC----------GAGATCGAAATGCTCT----------GCAA--------C-----TG---ATT--------CTT------TCAACCATTTGGTAGTTATTGATCCTCCTACGTAAGTCTCCT-GTTTCATCTACGTATTGT-TGATCA---CAGAGCTTACAGTTTATGTTGGAAATGCAATTATCCGTGCGACA-GGCTGTTTCC-CCCAGAATTCAGTAGTGTCA-ACTTGTGACAGGACTCTTAAAACTGTTAC----T--TCTAGC---GCTGTGTTTGCATATCGGGCATC--TACCA--TCAGA--ACATG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TGGTGATAGACTCGCAGACAAAAAAATGAACGGCAACCCCCAACCCCCCCTCCCCCCCTCCAGAACAACACCTAATATTAACCACGAGTCAGAAACTATGTCACATTCATTTGTTTGTGTCATGTCATTGGAGGCAATGACCTCCAACCTAATACTGATAGGCATCCAAAACTTCTTGGAGCCTTTTTCGTTGTCTTGTCGCAATATCGACCCAGT
Unaligned ( gi|19 ): GGTGAAGTCATTTAAGTTTATTCAAACCATCAGGGCAAAATGACTTCAGTCTACTTTGTCCAGAACTTCTCCTTGCCTATTCTCTCTGCATCAGAGAGGCATCTAGAGTCGTGATCTGTCATATCCTTCCATCTATGGCCATTAAGGCTGAAGTGATCCCCAACAGATTC
Unaligned ( gi|23 ): ATATTGCTCTAATGAACTGGTAATGGTTTAGCCCGTTGTCATCTTGGAAAAGTCATAGAGTTTGTTAATACCTTGATGTTCGAATGACTTCAGCCTATGCATTTAGAATTTCTCCTTTCGTTTTCTTTAAATATCTGACCA
Unaligned ( gi|26 ): GACTAGGACTGTCGATGAGATTCTCGGTGCTAGAGTTGTGTTTGCGTGATTCTAGACATCCTGATATCAGTATGTTAAAACTGCCTCCATTTAAGCATTAAATTGTTAAGTCTAGTCTTCATCA
Unaligned ( gi|32 ): AGCAAAGTAATTGAACTATTTTAAACCATCATGGTGAAATTACATCAGCCTGTGAATCTTCTCTTCTTCATCTCTGCAAAAGACTATCTAGACTCGTGAT
Unaligned ( gi|36 ): TCATTCTATTGAAATTTCTGGTATTTTTCCTGCCATAGGGGCGGAATGATTGCAATATATGCATCGATCAAGGAATGTTAT
Unaligned ( gi|37 ): ATGATGATGCTCAAACAAAGAATAAATGACAAAATCCCCCACAGAACAACACATAGTATTAACTAGGCGAAGCTAGACCAC
Alignments
lowQualScore : 11111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 11 1 1 1 11111 1111 22222222222222222222222222222222222222 5555555555555555555555555555555555555555 11111 1111 11 222 11 6666666666666666 333333333 11 1111111 111 111 11111111 222222 1 11 111 1 11111 555555555555 22222 11 3333333333333333333 222 111111 444444444444 111 1111 1111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111 1111 1 1111 222 222 5555555555555555 1 222222222 11 111 222 1111 11 11 111 11 4444444444444 11 1 22222 1 11 1 3333 111 33333333 1 2 1111 1 2222 222 2222 1
lowQualScore : 5 1 5 1 1 5 1 5 88 6 3 0 0 9999 1 0 5 9 6 22222 1 3 5 2222 88888888888888888888888888888888888888 2 2 1 4444444444444444444444444444444444444444 66666 2222 1 00 3 1 8 77 333 1 0 3 77 9 6 7 00 1 1 77 4 1 1111111111111111 4 3 22 111111111 1 11 1 1 1 0 0 1 0 1 2 33 8 99 66 0 5 1 5 1 1 66 999 1 1 1 1 2 8888888 55 5 0 000 3 11 3 0 33 0 3 1 8 444 44444444 8 888888 1 1 1 0 1 6 0 1 1 1 33 0 6 99 5 55 7 000 3 77 3 6 33333 000000000000 77777 1 5 44 77 6 0 7 7 5555555555555555555 222 7 2 5 1 1 999999 333333333333 3 1 44 111 4444 1 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 1 3 6 3 5 77 5555555 0 8 5 1 4444 0 3 0 0 77 9999 2 111 111 1 6666666666666666 5 0 0 0 0 0 1 1 1 555 1 1 222222222 11 666 0 2 0 444 1 333 3 7777 33 8 1 33 1 7777 6 1 77 6 1 1 6 11 0 11 111 3 1 2 0 0 1 11 1 11 1 1111111111111 1 0 00 00 0 1 3 66666 0 00 0 6666 1 777 11111111 1 5 2 1 0 0 7777 7 0 0 3 2222 333 7 1 1 0 1 1 8888 3
lowQualScore : . . . . . . . . .. . . . . .... . . . . . ..... . . . .... ...................................... . . . ........................................ ..... .... . .. . . . .. ... . . . .. . . . .. . . .. . . ................ . . .. ......... . .. . . . . . . . . . .. . .. .. . . . . . . .. ... . . . . . ....... .. . . ... . .. . . .. . . . . ... ........ . ...... . . . . . . . . . . .. . . .. . .. . ... . .. . . ..... ............ ..... . . .. .. . . . . ................... ... . . . . . ...... ............ . . .. ... .... . . ............................................................................... . . . . . . . .. ....... . . . . .... . . . . .. .... . ... ... . ................ . . . . . . . . . ... . . ......... .. ... . . . ... . ... . .... .. . . .. . .... . . .. . . . . .. . .. ... . . . . . . .. . .. . ............. . . .. .. . . . ..... . .. . .... . ... ........ . . . . . . .... . . . . .... ... . . . . . . .... .
lowQualScore : 5 0 0 0 0 5 0 0 00 5 2 0 0 8888 0 0 6 0 7 55555 0 4 0 1111 11111111111111111111111111111111111111 7 3 1 6666666666666666666666666666666666666666 11111 1111 0 00 2 0 0 77 333 0 7 5 00 3 7 5 88 0 0 77 9 0 7777777777777777 6 2 44 222222222 0 00 0 0 0 7 3 5 3 0 3 44 7 33 99 2 0 0 0 0 0 99 444 0 0 0 0 8 6666666 11 0 7 000 0 77 0 4 44 3 8 0 8 000 22222222 0 666666 4 4 0 6 4 0 8 4 4 0 22 2 7 22 7 77 5 222 2 77 3 7 33333 666666666666 11111 0 7 44 99 6 7 3 3 0000000000000000000 000 1 3 6 4 0 222222 222222222222 7 0 22 777 2222 6 3 2222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 0 5 7 7 6 88 2222222 8 0 0 4 6666 8 8 8 2 33 0000 5 555 000 0 5555555555555555 0 7 7 7 7 7 0 0 0 222 0 2 000000000 22 555 2 5 2 000 0 222 2 0000 55 0 4 88 0 1111 0 7 99 6 0 7 7 00 7 00 888 8 4 8 4 8 0 44 0 00 0 8888888888888 2 2 55 88 0 0 2 55555 0 88 0 8888 0 555 22222222 0 5 5 0 8 0 3333 3 7 7 3 7777 333 3 0 0 7 0 0 3333 3
consensus : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCGAGGNGTAAAGTCTGGTGGGGCTTAGCNCANGTTCATTCTAGCAAANTCATTCGATTTTATTCAATTGCCATTTTCTCCTTGTTTT-TTC-TTTCCAGNGTCGNTCCA-GTTAGGGTTATG-GTCAATAAC-----CACNACCGTCATGTC-TTC----CCA----------------TT--T------C----------GAGATCGAAATGCTCC----------GCGAC--------TG---G-T---------CTTAATG-GTGGACC----GGTGGTTGTTGATTCTTCTACGGAGGTCACCT-GTTTCACCTACGTACTGC-TTTTGG---CANACCTTACAACCGATAAGGTAGACGCAGTTGTCCGTGCGACA-GGACGTNGCT-CCCAANATTTTGTAGCTNCG-NCCTGTGACAGGGCTGCTGAAANTGTCAG----T--GC---C---GCTGCGTTTGCACATNAGGCATCT-G-C--A-TCNGA--ACANGTNTTGAAACCNCCGTTGGGTAATGGGTTATCCAGCCTAGTTCTAACTACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATNG-GNGGNTCTTTG--AAGACCCTAGCCATTCNTTNGTTGNTGTGNAGAATGGGNAAATG-----NCT-TC-TCAGGATGNTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCG-CCT-TCTTCTCT-C-GNTTATATTGAAGNAGGGATTCTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGNTTGCACT-TGGG-G--GCTTTG-TAGCCTCTCTTGCACAGGTGNTTTTTC--GATGG-NTGCT-TTGTTC-TT-A---TAA----GNAA---CAGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCCTTAGGTACTCCTTTGAAGGTATGAGGT-GG-TGACAA-C-T-GATGGCATGGNATATATAAATGTGAGTCAGCGGGTTTNGTGTGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANCGTG---GAAGTG----GTATCCAAGAATACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----ATAAAGTTNTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAA-GG-CGATTGTCTGAGT-AAGTTGCGTTCAAATCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCACTNACTTGTAAGTAATGTTCGCCGTTGAACGCGAAGTTATTGAGTTTGAGGACATNA--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTGTCAGGGCCCTGCTATCCCAANCCTCTCTGCAGGCTTCAATGCCTTCCATCGTGGGGGATGTTCGTGTAAAGCGAAGTCGTATCCATGGTCGCGAGGNGAATATNGTCNGGCAGGTTNNAANAAAGGT--TTTTG--TTA-AGGTAACCAGTNGTGTCCTTCAGGTATGACGGTAG---CTTNACAACGTGCGGACG----GAGATGTAGGTCAATGAATT-CTGAGATTTTCTCCGTGGGGTGTCCGATGGCACTCACTATGGGACGGCCAGGCATGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GG--TCTACAGTCGAG--AGGCAGCAATGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTNTCGNTGATNGTGGCAGAAAACGTT--TTNGTGGGGTCGGAGTCCAG-T-------TNTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCCGCTACGTATG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CCG---TTNTTTT---AGC--CT---NAAGGNCAGCTCTCTCTTCTTTGCTNAGATTGTCC-GGAATA-TT-CTGTTTCGTCGAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTNGATGTAGGACTCGANGGCCGCACATTTTNCTANTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAG-AGTTT
Reference ( family-3283 ) : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCGAGGNGTAAAGTCTGGTGGGGCTTAGCNCANGTTCATTCTAGCAAANTCATTCGATTTTATTCAATTGCCATTTTCTCCTTGTTTT-TTC-TTTCCAGNGTCGNTCCA-GTTAGGGTTATG-GTCAATAAC-----CACNACCGTCATGTC-TTC----CCA----------------T----------C----------GAGATCGAAATGTTCC----------GCGAC--------TG---G-T---------CTTAATG-GTGGACC----GGTGGTTGTTGATTCTTCTACGGAGGTCACCT-GTTTCACCTACGTACTGC-TTTTGG---CANACCTTACAACCGATAAGGTAGACGCAGTTGTCCGTGCGACA-GGACGTNGCT-CCCAANATTTTGTAGCTNCG-NCCTGTGACAGGGCTGCTGAAANTGTCAG----T--GC---C---GCTGCGTTTGCACATNAGGCATCT-G-C--A-TCNGA--ACANGTNTTGAAACCNCCGTTGGGTAATGGGTTATCCAGCCTAGTTCTAACTACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATNG-GNGGNTCTTTG--AAGACCCTAGCCATTCNTTNGTTGNTGTGNAGAATGGGNAAATG-----NCT-TC-TCAGGATGNTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCG-CCT-TCTTCTCT-C-GNTTATATTGAAGNAGGGATTCTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGNTTGCACT-TGGG-G--GCTTTG-TAGCCTCTCTTGCACAGGTGNTTTTTC--GATGG-NTGCT-TTGTTC-TT-A---TAA---CGNAA---CAGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCCTTAGGTACTCCTTTGAAGGTATGAGGT-GG-TGACAA-C-T-GATGGCATGGNATATATAAATGTGAGTCAGCGGGTTTNGTGTGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANCGTG---GAAGTG----GTATCCAAGAATACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----ATAAAGTTNTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAA-GG-CGATTGTCTGAGT-AAGTTGCGTTCAAATCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCACTNACTTGTAAGTAATGTTCGCCGTTGAACGCGAAGTTATTGAGTTTGAGGACATNA--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTGTCAGGGCCCTGCTATCCCAANCCTCTCTGCAGGCTTCAATGCCTTCCATCGTGGGGGATGTTCGTGTAAAGCGAAGTCGTATCCATGGTCGCGAGGNGAATATNGTCNGGCAGGTTNNAANAAAGGT--TTTTG--TTA-AGGTAACCAGTNGTGTCCTTCAGGTATGACGGTAG---CTTNACAACGTGCGGACG----GAGATGTAGGTCAATGAATT-CTGAGATTTTCTCCGTGGGGTGTCCGATGGCACTCACTATGGGACGGCCAGGCATGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GG--TCTACAGTCGAG--AGGCAGCAATGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTNTCGNTGATNGTGGCAGAAAACGTT--TTNGTGGGGTCGGAGTCCAG-T-------TNTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCCGCTACGTATG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CCG---TTNTTTT---AGC--CT---NAAGGNCAGCTCTCTCTTCTTTGCTNAGATTGTCC-GGAATA-TT-CTGTTTCGTCGAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTNGATGTAGGACTCGANGGCCGCACATTTTNCTANTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAG-AGTTT
gi|1 : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCAAGGTGTAAAGTCTGGTGGGGCTTAGCTCAAGTTCATTCTAGCAAATTCATT-GATTTTATT--ATTGCCAATTTCTCTTTGTTTTATTC-TTTC-AGAGTCACTCCA-GTTAGGGTTGTG-GTCAATAAC-----TACGACCGTCATGTC-CTC----TTA---------------------------C----------GGGTTCGG--TGATTC----------GT--T--------TG---G-T---------CTTTATA-ATATACC----GGTGTTTGTTGACTCTTCTTCGGAGGTCACCT-GTTTCACATACCTACTGC-TTTTGG---CATTTCTTACAACTGATAAGGTAGGTGCAGTTGTCAGTGCGGCA-GGACGAAGCT-CCCAAAATTTAGTAGCTCTG-TCCTGTCACCGGACTGCTGAAAGTGTCAG----TTGGC---CC--GCTGAATTTGCACATGAGGCATC--A-CTTA-TCAGA--ACACGTGATGAAACCCCAGTTGGGTAATGGGTTATACAGCCTAGTTCTAACTACAATGTCCTTTATATTTCAAGGT-TG--TCTGAAGGCCG-CCATTG-GAGGGTCTTTA--AAGATCCTAGCCATTCGTTTGTTGTTATGCAGAATGGGCAAATG-----GCT-TT-TAAAGATGGTATTGAGGTTCTTCAGGGCGTGATGAAATGTAGTAACTAAATGGA---CT-CTATTG-CCT-TCTTCTCTCC-GGTTATATAGAAGCAGAGAGTTTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGCTTGTACT-CGAACA--GCTTTA-TAGCCTCTTTTACATAGGTGGCTTTTC--AAGAGTCTGCT-TTGTTT-TT-C---TAATTCCGAAC---CAGA--G--GAACAGATACGACGAA-CTCGT-GTAGCTAA--AACCTTAGGTACTCCTTTGAAGGTATGAGATGGG-TGACAG-CTT-GAAGGCAT--CATGTATAAATGTGAGTCAGCGGGCTTTGTGTGGAGGTTG------AATTC---------A--ATTTTATCATTCAAGAGAGTG---GAAGTG----ATATCCAAGAATATGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGGTGAAATGAGT---TGG-------------------TAAAGTTTTCAAGCCTATCTCG-GCCCTCCTTCCATTTCATTTCAATGTCATCAATGAAACACAACCAACTATGGGGTTTAAAGGG-CGATTGTCTGAGT-AAGTTGTGTTCCAATCTTCCCATGAAAATGTTGGGATACGAATGAGCCATTTTCGTTCCCATAGCTGTGCCACTAACTTGTAAGTAATGTTCGCCGTTGAACACGAAGTTATTGAGTTTGAGGACATAA--TCAAGGAGCTTGACCAATTATTCTGTGGAAGGA---TGTGTCAGAACCCTGCTATCCCAAACCTC----------------CCTT-CATCGTGGGAGATGTTTGTGTGAAGCAAAGTCATATCCATGGTTGCGAGAAGGATATTATCAGGTAGGTTGGAAGAGAGGG--TTTTG--TTA-AGGTAATCAGTGGTGTCCTTCAAGGATGATGGTAG---TTTAACA---TGTAGGCG----GAGGTGTAGGTCAATAAATT-CTGAGATTTTCTCCTTGGGGTATCCAATTGCACTCACTATAGGGCGGCCAGGCATACCTTCTTT--GTGGATTTTAGGCGGTAAATAAAATTGTCCA-GG--TCTACAGTTGAG--AGGCATCAATGTTTCAAAGACAT--TATTACCAATTTTCTCGTCTTTGTACATTTGCTCAAGAGTGTCGTTGATTGTGGCAGAAAACGTT--TTGGTGGGGTCGGAGTCCAG-TTTAGCAGTTTAGTGTAAAACCGTTCATCCGGGACATGTCTGTGCGCTTCCGCTGTGTATA-TTATCTTGTCTAATACCACCAATGTTGACCCTCTGTCTGCTTTTTTTTT-TTATAACAATGTCATC-CCGT--TTGTTTT---AGCT-CT---TAAGGCTAAC-CTCTCTTATTTGCTTAACTTGTCCGGGAATATTT-CTGTTTTGTTGAG-TAG--T-TTTTCAATGTC---CTGCTCAACTAATTCGATGTAGGGCTCGATGGCTGCACATGTTCCTATTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAGTAGTTT
gi|10 : ACTGC-TTCTGATGACAAACTTTGCAACCGAGGAGATAAACAAAGTTATT-----------GAAGTCGC---CTAATATTCTGTAACTACG-GTCTGTGATAGGACTGCTGAAGGTCTCAGGGGGT--AG---A---GTTGTATTTGCA--TAAGATATCT-G----A-GATGATGATAGATCTTAAATCCTCCAATCGGTAATAGGTTGTCCAGTCTAGTCCTCACCAATATGTCCTTTATGTTCCT-GGTGCA--CCTAAGGGCAGTCCGTAG-GTGGACCTTTG------------TCATTCGTTGGTTCTTGTGTAGAATAG--AAATG-----AC-------AGGATGGT----AAG----------------------TGGTGACTAAG-GGA---CC--------CCT-GCTTCTCT-C----TACATTGTAAAATAGATCGTCTGTCTTGTTC-GGTTAACTCATCAACTG
gi|11 : CCTGTGATAGGACTGTTCAAACTTTCAG----T--GT---CTGAGCTACATTCGCACAATTGATGTCT-G-A--GGTCTGA--GCATATGTTGAAACCTCCATTAGGTAAAGAATTATCCAGTCTATCCCTAACATCCATGTCCTTTAGGTTTCTAGG--CG--TCTGGAGGACG-GCATAG-GGGACTCATTG--AAAACATCAGCCTTTCATTTATTGGGATGCAGAATGGGCAGATA-----CCG-TC-TCGAG-------------TCTTGAGGGCGGGATGGTATGTAATagg
gi|12 : AA---GAGA--GA-GAGCA--TGTGACAAAACTCTT-GTGCCTAC--ACCTTTAGGTACTCTTATAAAGGTATAAAGT-GG-------------ATAGCATAAGATACA-GAATA-GAATCCACAGACTTTGTATGGAGGCTGCATCAGAATTCTTGCATAATG--ATTTCATCATTtttgaggtaaatgacttttgaggatctttccttgtttt
gi|13 : aaaacatccttttaacagatagctttgcttttaaatactctactctgttttggaatgctgtgggagATGATGGTAG---CTTCATAGCATATGGACATGCAGAGATGTAGGTCAATCAATT-CTGAGATTTGCTCCGTGGGGTGCCCAATGGCACACACTATGGG-TGACCAGGCACACCCTCCTT--GTGGATTTTAGGCAGTAGATAGAATTGCCCA-GGTATATACAGTTGAG--AGGAAGCAATGTTTCAAAGACAT--TTTCACCAATTTCCTCGTCTTTGT-----------AGAGTTTCACTGATGGTGGCAGAAAACGCT--TTattgagattaacaaaattgggaacattttcaag
gi|14 : aaaACAGTTGAG--AGGCAGCAATGTTTCAAAGACA-------ACCAATTTTGTCATCTTTGTACATCTGCTTAAGAGTGTCGGTGATTGTGGCAGAAAACGTT--TTGGTAGGGTCGGAATCCAG-T-------T-TAGTGTAAAACCGTTCATCCGAGAGTTGTCTATGCGCTTCCTCTA--TATG-TTGTCTTGTCTAATACCACCACTGTTAACg
gi|15 : TAGTATGGAGGCTG------AATTTT--------A--ATTTCACCATTCCAGAATGTG---GAAGTG----GTATCCGAGAATACGTTCTTGGAGCTAGAAATTTC---------CA---------CTGTAAATTTTATG--GAA---TGATGAAATGAGT---TAG-TTAAGGA----A-----ATAAAGTTTTCAAGTTTATCTCG-GCCCTCCGTCCATTTCATCTCAATGGCATCAATGAAATGCAACTAACTATGGGGaatgtcatactggttttatcaaaatgtc
gi|17 : acaagtgtgaataGTG---GAAGTG----GTATCCAAGAATACGTTCATGGAGCTGGAAATTTC---------C--------------------------------------AATG----------------------------TAA---TCT---GTCTATTTTC-GCCCTCCGTCCATTTCACCTCAATG---------AAACGCAACCAATTATGGGGTTTAAA-GG-AAGTTGTCTGAGC-AAGTT-----------TTCCAATGAAAATGCGGGGATACGATGGAGTCATCTTCGTTCCCATAGCTATGCCACTTACTTGTAAGTAATGTTC
gi|18 : aTCATGTTTCT--GT-TGCCTCTGAAGGATG-TCATAGTGGGGGTCTTTG--AAAACATAAGACGTTCATTTGTCGGCCTACTGAATGGGTAGACA-----TTT-TC-TCAGAATGCATTTGAAATACTTGAGGGCGGGATGGTAAGCAGT
gi|2 : atcagtattgaATTGTATGAGG-ATGTTGCGTTCAAGTCTTCCCATGAAAATGTTGGCATACGATGGAGCCATCTTTGTTCCCATAGCTGTGCCACT----TGTAAGTAATGTTCTCCGTTGAACATGAAGTTGTTGAGTTTGATGATATGT--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTG---GGGCCTTGTTATTCCAACCCTCTCTGCAGGCTTCAATGCCTTCCATCATAGGGGATGTTCTTATAAAGTGAAGTCACATCCCTGGTCACAAGAAGAATATTGTCAGGTAGGTTGGAAGAAGGGT--TTTTG--TTA-TGGTAGCTAGTA-----------GTATGATGGTAG---CTTTACAACATGTGGTCG----GAGATGT---CCAATGAttgtcattttgaggttttctctgtattgtttga
gi|2 : GAGATGTCCAATGACACC----ATGGGACGGCCAGGCATACACTCT------G---TTTAGGGGGTAGATAAAATTGTCCA-GA--TCTACAGTTGAG--AGAAAGCAGTGATACAAAGACAT--TGTCACCAAGTTCCTTGTCTTTGTACATCTGCTTAAGAGTTTTTGTGATGGTGGCAAAAAACGTT--TTCGTAGGGTTGGAGTCCAG-T-------TA-AGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGTGCTTCTACCATGTATG-TTTCCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTTGTTA--ACAATGTCATC-CTG---GTCTTTT---AGC--TTTTGTAAGACTGAC-CT---TTCTTTCCTTAGATTGTCCTGGAACC-TTGCTGTTTTGTCAAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTGGATGTAGGACTCGAGGGCTGCACATTTTACTGATGGAGGTTCCAATTTGCTCTTAGTTC----GGTAG-AGTTTcaccatgggacggccaggcatacactctgtttagggggtagataaaattgtccagatctacagttgagagaaagcagtgatacaaagacattgtcaccaagttccttgtctttgtacatctgcttaagagtttttgtgatggtggcaaaaaacgttttcgtagggttggagtccagttaagtgtaaaaccgttcatccgagagttgtctgtgtgcttctaccatgtatgtttccttgtctaataccaccactgttgaccctttgtctgcctttttgttaacaatgtcatcctggtcttttagcttttgtaagactgacctttctttccttagattgtcctggaaccttgctgttttgtcaagtagtttttcgatgtcctgctcaactgcttggatgtaggactcgagggctgcacattttactgatggaggttccaatttgctcttagttcggtagagttt
gi|20 : attgtatgaggatgttgcgttcaagtcttcccatgaaaatgttggcatacgatggagccatctttgttcccatagctgtgccacttgtaagtaatgttctccgttgaacatgaagttgttgagtttgatgatatgttcaaggagcttgaccaacgattctgtggaaggaatttgtggggccttgttattccaaccctctctgcaggcttcaatgccttccatcataggggatgttcttataaagtgaagtcacatccctggtcacaagaagaatattgtcaggtaggttggaagaagggtttttgttatggtagctagtagtatgatggtagctttacaacatgtggtcg-G--GCTTGG-TTGCCTCTCTTGCAC--GTTTTTTTTT--GATGG-ATGCTCTTGTTC-TT-A---TA-----GAAAGTGCAGA--GTAGAGCAGATATGGCGTA-CTTG--GTGGCTAA--ACCTTTAGGTA-----TTG--GGTA-GA-----A-TGGCAA-C-TAGATGGCATGGAAT-TATAAA
gi|21 : a-G--GCTTGG-TTGCCTCTCTTGCAC--GTTTTTTTTT--GATGG-ATGCTCTTGTTC-TT-A---TA-----GAAAGTGCAGA--GTAGAGCAGATATGGCGTA-CTTG--GTGGCTAA--ACCTTTAGGTA-----TTG--GGTA-GA-----A-TGGCAA-C-TAGATGGCATGGAAT-TATAAAatacatcacgaggcagccgagt
gi|22 : a-T---------TTTAATG-GTAGACC----GGTGGTTATAGATCTTTCAACATAGATACCCTAGTTTCACCTACGTAGCG----TTGGTCACAAACTTTGCAACTTTTAAGATAGATACAGTCGTCCGTGCGACA-GGATGTGTCC-TCAAGGA--TTATAATATAA-GCCAGTGGCAGGGCTatacatcacgaggcagccgagt
gi|24 : tcTTTTTCCT-GTCTT-TTC-CTCTCTGCATCGGTCCATGTT-GGGTTATA-ATCGATAAT-----CACCACCTGCATATC-Tct
gi|25 : atgcgcacgaaatcattcagtttgttcattccatctgggcggaatgatttcaagcgatgcatctatgaACATATAGATGGCAGTTAGCAGTTTTGGCGTGGAGCCTG------AACTC---------G--ATATTTCCGTTAACGACCTTA---GACGTG----CTGTCTAGAAAGACGATAGTGGATGTGGAAAT
gi|27 : aggaggatggcgggattagatatAGGCGAATTTGGTGTTGCAGGT-CCAATAAATGTAATTTTAATTTA-GGGTAACCATTCGGGTCCTTAAGGTGTGACGGTAAATCCTTTACA---TGCTGACG----GGG
gi|28 : tgaaagttcaataattatcCTTTA-TAGCCTCTCTTGCACACATGGTTTTTC---ATGG-TAATT-TTGTTC-TTGA---TAA---AGTGC---AAGATTG--AAACAGATGCGATGGA-TTCGA-AGGGCTAAGTACTCTCAGGTATTCCTTTg
gi|29 : TGGGATGTCCTGTAGCAATGACTATTGGACTTCCATGCATGTTTTTTTTTTATGAATTTTAGGAATTAAGT-AAATTTTCCT-GA--TCTACAGTCG
gi|3 : TGAAACCCCCGATAGGTAGTGGGTTATCCAGCCTAGTTCTGACTACAATGTTCTTTAAATTTCTAGGT-TG--TCTGAAGGCCT-CCATTG-CAGGGTCTTTA--AAGACCCTAGCTATTCTTTCGTTGTTATATAGAATAGGTAAATG-----GCT-TT-TAAGGATGGTATTGAAGTTCTTCAGTGCGGGGTAAAATGTAGTCACTAAGGGGA---CT-CTATTG-CCT-TCTTCTTT-CTGTTTATATAGAAGCAGGGAGTTTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGGTTGTAC--TGGA-GCAGCTCTA-AAGCCTCTTTTACATAGGTGACTTTTCAGGA-GT-TTGCT-TTGTTT-TG-AGTTTAATTTCGTGA---CAGA--G--GAACAGATACGACAAA-CTTGT-GTTGCTAA--ACCCTTAGGTACTCCTTTGAAGATATGAGGTGGG-TAACAGCC-T-GAAGGCAT--CACATACCAGTGTGAGTCAGTGGGTTTTGTGCGGTGGCTG------AATTC---------A--ATTTCACCGTTCATGAGAGTGATCGAAGTGGTAAGTATCCAAGAATACGTTCTTGGAGCTTGAAATTTC---------CT---------T-----------TG--TAAATTTAATGAAATGAGGAAATGG-T-----A----AAGGAGATAAAATTTTCAAGTCCATCTCG-GCCCTCCTTTCTTTTCAACTCAATGTCATCTTTGAAACCCAACCAACTATGAAGTTTAAA-GGCCGATTGTCTGAGTAAAGTTGCATTCAACTGTTCCCATGAAAATGTAGGCATACTATGGAGCCAttggaacaaagcacttc
gi|30 : TCAATAAC-----CACCACCGTCATGTC-TTC----CCATGCATATGAGTGTCCCT----------C----------GAGATGAAAATGCTCG----------GCGAC--------GG---G-T---------TCT------TGGACC---------CTTTTGGTTCTT
gi|31 : ACGTTTTTCAGATTTCCTGGG-CG--TCTGAAAGCCA-CCATGG-ATGGTTCTTTG--AAGACCATGGCCATTCTAGAGGTAATGTGAAGAGTGGGAAAATG------CT-TC-Tatggtagaccgatga
gi|33 : ttcagGTTAATGAATTTCTGGGATTTTTTCCGTGGGGTGTCCG-------TCA------GACACCCTGACATGGCTGTTTT--GTGTATTTCGGGTAGCAAATAAAATTGTTCA-tc
gi|34 : TG-ATCAATAACAAACTCATGAATGTCATCCCATTCAGGACCA----------------T----------T----------GAGGCTGAGACGTTCC----------ATAAC--------TGGTTG-T---------TTTGACG-GTGGATC----GGcttc
gi|35 : agaatagTTGTCTGC-----TTTT-TTATGACTATGTCGTCACCGGTTTTTTTTT---AGCAATT---GGAGGACAGCTCTCTCTTCTTTGCTGAGATTGTCT-G
gi|38 : ACAATGGGGCGGCCAGGAATATTCTGTTT--GTGTATTTTAGGAAGCATGTAAAATa
gi|39 : ctactgcagatTCAATAAT-----CACTACTGTCATGTC-TTT----CCA----------------TTTGTTGAATGC----------AAAATTAAAATGCTCG----------GTGAC--------
gi|4 : aAGAATTATG-GTCAATTAC-----CACTACTGTCATATC-CTC----CCA----------------T----------CTGTGACCATTAAGATTGAGGTGTTCC----------CCGACGGGCTCTTTG---G-TTCTTTTTGTCCTAATG-GTGGATC----GGTGGTTGTTTATTCTTTGGCGGATGTCACCC-GTTTCTCCAACATATTGC-TTTGAG---CAAACCTTACAATTG---AGATACACACAGTTGTCTGTGTGACA-GGACAT-GTTACCCAATATTTTGTAGATGCG-ACCAGTAAC-GGGCTAGTAAATTTGTCAG----T-----------GCTGTGCTTACACAAAAGGCATCTGG-C--A-TCGGA--ACAAGTTTTAAAACCACCATTGGGTAATGGGTTGTCTAATTTCGCTCTCACTACCATGTCCTT----TTCCTAGGC-CG--TCTAAATGCAG-CCATTG-GTGGATCCTTGAAAAGATCC--GTCATTCTTTTATTATTGTGAAGAATATGTACATGTAGATTCTCTC-TCAGGATGCTGTTAAAGTTCTTAAGGACGGGGTGAAATGTTGTGAC-ATGTGGAACCCTACTATTGTCTT-TCTTCTC-----ATTGTATTGAAAAAGGGTTTCCCTGTT-CTTTGTGGTTATCTCATCAATTGCGGATTGCACTGTGTG-G--GCTTTG-TAGCCTCGATTACACAGATG
gi|40 : gCAGGTTTTAAAGCCATCATTGGGTAAAGGATTTTCCTACTTGGTTCGAACCACCATGTCTT
gi|5 : G--TCTGAAGGCTG-TCATGT-GTCGTTCTTTG--AAGATCATGGCCATTCTAGGGGTAATGTGAAGAGGGGGGAAAT------ACT-TCTTCAGAATTTTGTTCAAATCTTTTAAGACAGGGTGGTACGTAGTGACCACTGGGA---CT-ATGTCA-CCTATCGATTCG-T-GTTTGTATTGTAGTAGGGATTCTCTGTCGTGTTCT-GACATCTCATCAACAGCTGCTTGCACT-TTGG-G--GGTTTGATAACCTCTCTTGCACAGATG--TTTTA--GATGG-GTGCT-CTGTTCTTT-A---TGA---AGT-G---CAGAGTG--GAGCAGGTACGACGGA--TTGTGGTGGCTAC--ACCTTTAGGTACTACTTTGAATGTATCAGTA-GGATGACAA-C-T--ATG-------AGATACAAATTTGAGTCAGTCGGTTTGGTATGGAGACTG------ATTTC---------AACATTT--CCGTTAAAAATCTTG---TTAACA----G-A---AAAAAGACGTTACTGGATGTGGAAATATCAACAGTTAACA---------TGA---------TC--AAA---TTATGGAATGAGT---TGGCT-----AGTTTA-----ATAAAGATGTCAAGATT-TCTCATACTTTTTACCCACTTCGTCGCAAT
gi|6 : AATT-CAGATAATCTCTCCGTGGGATGTCTGATGGCACTGACAATGAGTCGACCAGGCACGCCTTCTTT--GTGAATTTTAGGGAGAAAATAAAACTG-CCATGG--TCTGCAGTC-AGCCGGACAG-AGTGCTTCGTAAACGTAGTCTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTCCTCTGTGGGGTCTGAATTCAGCT-------TCT--TGTAATACTGCTCATCAGATAGCTGCCTGTTGGCTTCAGCTACATACGATTCTCT-GTCTAGAACAACTACTGTAGACCCTTTGTCTG----CTTTCT-TTACGACAATATCGTC-ACG----GGTTTTGAGAGA--CT---GAAGGGCAGCTCTCTCTTCCTTGTTGAAGTTATCC-GAAATA-TA-TGG--TCGTTGAGACAGGATATCTTCGATATTAGACTGC---ACTGCGTAGATATAAGATTCCAAGGCCCCACATTTTTCAAGTGGAGGTTCCCAGGGATTCTTAGGCTTACAAGTAG-AGTTTcaacttacagacc
gi|7 : CCAACAAAATATTCTTGAAGTTGGAAATTTC---------CACCGTGAACCT-----------TGTAGAA---TAATGGAAAGAGT---TTG-C-----A----GTCATGATAAAGTCATAGAGGCTTTCGCG-ACTTTCAAACCACTTCATTTCAATGTTATATGTGAAATGTAGCCAACTACGAGGTTTA-------GATAG--TGAAT-GA-TTCCATT---ATCTT--TATAAAA-------CCCAAAATGGTGTAATTTTTGTTCTCATAGTTGTGCCACTGATTTACAGATAATATGAGTCCAAGAA-GCTAAGTGATTCAGTTGAAGAACATTACCTCAAG
gi|7 : ATGTATGTGTAAAGTGAAATAGTATCCATGGTCACAAGGCGAGTATGGTCTGGCGGGGTTTAATATAGGT-----------ACATGTAATCAGATGTGTTCTTCAGGTATGACGGTAA---ATCGTCTATGTGCTGACG----GAGATGCAAGTCATTGAATT-CAGATATTTTATCTTTGGGGTGTCtgtaatgtatgtgtaaagtgaaatagtatccatggtcacaaggcgagtatggtctggcggggtttaatataggtacatgtaatcagatgtgttcttcaggtatgacggtaaatcgtctatgtgctgacggagatgcaagtcattgaattcagatattttatctttggggtgtc
gi|8 : ccaacaaaatattcttgaagttggaaatttccaccgtgaaccttgtagaataatggaaagagtttgcagtcatgataaagtcatagaggctttcgcgactttcaaaccacttcatttcaatgttatatgtgaaatgtagccaactacgaggtttagatagtgaatgattccattatctttataaaacccaaaatggtgtaatttttgttctcatagttgtgccactgatttacagataatatgagtccaagaagctaagtgattcagttgaagaacattacctcaagtgtaCAATGAAATTTAC-ACGAGTATAGGTTGTGAAGAGAGGCGAGGAGTAAAGTCTGGT-GGGCTTAACATACGTTCATTCT-GCAAAGTCATTCGATTTTATTCAATTGCCATTTT
gi|8 : ATTTTCTC-TTGTTTT-TTCGTTTCAAGAGTCACTCCA-GTTAGGGTT-TGCGTCAA-AAC-----TACGACTGTCCT-TC-TTC----CCA----------------TTTGTAACCCTC----------TAGGTTGAAATGTTCCCAACGGTTCGGTGATCCGTT---TG---G-T---------CTTAATAAGTGA--C----GGTGATTGTTGACTCTTCT-CGGAG-TCACCT-GTTTCACCTACGTACTGCTTTTTGG---CATTTCTTACAACCGATAAGGTAGAT-CAG-TG-CAGTACGGCAGGGACATAGCT-CCCAAAATTTTGTAGCTCTGTTCCTGTCACCGGGCTGCTGAAAGTGTCAG----T--gaggccgaaatgactttaaatctgtgcatcagaattttctcttgttttttcgtttcaagagtcactccagttagggtttgcgtcaaaactacgactgtccttcttcccatttgtaaccctctaggttgaaatgttcccaacggttcggtgatccgtttggtcttaataagtgacggtgattgttgactcttctcggagtcacctgtttcacctacgtactgctttttggcatttcttacaaccgataaggtagatcagtgcagtacggcagggacatagctcccaaaattttgtagctctgttcctgtcaccgggctgctgaaagtgtcagt
gi|9 : caatgaaatttacacgagtataggttgtgaagagaggcgaggagtaaagtctggtgggcttaacatacgttcattctgcaaagtcattcgattttattcaattgccattttgaggccgaaatgactttaaatctgtgcatcagaTCTCCTTATTTT-TTC-TTTCCA-TATTGGTCCA-GTGCACGTTTTG-GTCAATAGC-----CACTACTGTCATGTT-TTC----CCA----------------TTCATGTCCTGC----------GAGATCGAAATGCTCT----------GCAAC--------TG---ATT---------CTT------TCAACCATTTGGTAGTTATTGATCCTCCTACGTAAGTCTCCT-GTTTCATCTACGTATTGT-TGATCA---CAGAGCTTACAGTTTATGTTGGAAATGCAATTATCCGTGCGACA-GGCTGTTTCC-CCCAGAATTCAGTAGTGTCA-ACTTGTGACAGGACTCTTAAAACTGTTAC----T--TCTAGC---GCTGTGTTTGCATATCGGGCATCT-ACC--A-TCAGA--ACATG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TGGTGATAGACTCGCAGACAAAAAAATGAACGGCAACCCCCAACCCCCCCTCCCCCCCTCCAGAACAACACCTAATATTAACCACGAGTCAGAAACTATGTCACATTCATTTGTTTGTGTCATGTCATTGGAGGCAATGACCTCCAACCTAATACTGATAGGCATCCAAAACTTCTTGGAGCCTTTTTCGTTGTCTTGTCGCAATATCGACCCAGT
Unaligned ( gi|19 ): GGTGAAGTCATTTAAGTTTATTCAAACCATCAGGGCAAAATGACTTCAGTCTACTTTGTCCAGAACTTCTCCTTGCCTATTCTCTCTGCATCAGAGAGGCATCTAGAGTCGTGATCTGTCATATCCTTCCATCTATGGCCATTAAGGCTGAAGTGATCCCCAACAGATTC
Unaligned ( gi|23 ): ATATTGCTCTAATGAACTGGTAATGGTTTAGCCCGTTGTCATCTTGGAAAAGTCATAGAGTTTGTTAATACCTTGATGTTCGAATGACTTCAGCCTATGCATTTAGAATTTCTCCTTTCGTTTTCTTTAAATATCTGACCA
Unaligned ( gi|26 ): GACTAGGACTGTCGATGAGATTCTCGGTGCTAGAGTTGTGTTTGCGTGATTCTAGACATCCTGATATCAGTATGTTAAAACTGCCTCCATTTAAGCATTAAATTGTTAAGTCTAGTCTTCATCA
Unaligned ( gi|32 ): AGCAAAGTAATTGAACTATTTTAAACCATCATGGTGAAATTACATCAGCCTGTGAATCTTCTCTTCTTCATCTCTGCAAAAGACTATCTAGACTCGTGAT
Unaligned ( gi|36 ): TCATTCTATTGAAATTTCTGGTATTTTTCCTGCCATAGGGGCGGAATGATTGCAATATATGCATCGATCAAGGAATGTTAT
Unaligned ( gi|37 ): ATGATGATGCTCAAACAAAGAATAAATGACAAAATCCCCCACAGAACAACACATAGTATTAACTAGGCGAAGCTAGACCAC
Alignments
lowQualScore : 11111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 11 1 1 1 1111 22222222222222222222222222222222 5555555555555555555555555555555555555555 11111 1111 11 222 11 6666666666666666 333333333 11 1111111111 111 111 11111111 222222 1 11 111 1 11111 555555555555 22 11 3333333333333333333 222 111111 444444444444 111 1111 1111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111 1111 1 1111 222 222 5555555555555555 1 222222222 11 111 222 1111 11 111 11 4444444444444 11 1 22222 1 11 1 3333 111 33333333 1 2 1111 1 2222 222 2222 1
lowQualScore : 5 1 5 1 1 5 1 5 88 6 3 0 0 9999 1 0 5 9 6 2 4 0000 0 99999999999999999999999999999999 2 2 0 4444444444444444444444444444444444444444 66666 2222 1 00 3 1 8 77 333 1 0 3 77 9 6 7 00 1 1 77 4 1 1111111111111111 4 3 22 111111111 1 11 1 1 1 0 0 1 0 1 2 33 8 99 66 0 5 1 5 1 1 777 999 1 1 1 1 2 8888888888 5 000 3 11 3 0 33 0 3 1 8 444 44444444 8 888888 1 1 1 0 1 6 0 1 1 1 33 0 6 99 5 55 7 000 3 77 3 6 33333 444444444444 77 11 1 5 44 77 6 0 7 7 5555555555555555555 222 7 2 5 1 1 999999 333333333333 3 1 44 111 4444 1 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 1 3 6 3 5 77 5555555 0 8 5 1 4444 0 3 0 0 77 9999 2 111 111 1 6666666666666666 5 0 0 0 0 0 1 1 1 555 1 1 222222222 11 666 0 2 0 444 1 333 3 7777 33 8 1 33 1 7777 6 1 77 6 1 1 6 99 0 11 111 3 1 2 0 0 1 11 1 11 1 1111111111111 1 0 00 00 0 1 3 66666 0 00 0 6666 1 777 11111111 1 5 2 1 0 0 7777 7 0 0 3 2222 333 7 1 1 0 1 1 8888 3
lowQualScore : . . . . . . . . .. . . . . .... . . . . . . . .... . ................................ . . . ........................................ ..... .... . .. . . . .. ... . . . .. . . . .. . . .. . . ................ . . .. ......... . .. . . . . . . . . . .. . .. .. . . . . . . ... ... . . . . . .......... . ... . .. . . .. . . . . ... ........ . ...... . . . . . . . . . . .. . . .. . .. . ... . .. . . ..... ............ .. .. . . .. .. . . . . ................... ... . . . . . ...... ............ . . .. ... .... . . ............................................................................... . . . . . . . .. ....... . . . . .... . . . . .. .... . ... ... . ................ . . . . . . . . . ... . . ......... .. ... . . . ... . ... . .... .. . . .. . .... . . .. . . . . .. . .. ... . . . . . . .. . .. . ............. . . .. .. . . . ..... . .. . .... . ... ........ . . . . . . .... . . . . .... ... . . . . . . .... .
lowQualScore : 5 0 0 0 0 5 0 0 00 5 2 0 0 8888 0 0 6 0 7 8 2 6666 2 33333333333333333333333333333333 7 3 4 6666666666666666666666666666666666666666 11111 1111 0 00 2 0 0 77 333 0 7 5 00 3 7 5 88 0 0 77 9 0 7777777777777777 6 2 44 222222222 0 00 0 0 0 7 3 5 3 0 3 44 7 33 99 2 0 0 0 0 0 111 444 0 0 0 0 8 9999999999 0 000 0 77 0 4 44 3 8 0 8 000 22222222 0 666666 4 4 0 6 4 0 8 4 4 0 22 2 7 22 7 77 5 222 2 77 3 7 33333 444444444444 99 44 0 7 44 99 6 7 3 3 0000000000000000000 000 1 3 6 4 0 222222 222222222222 7 0 22 777 2222 6 3 2222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 0 5 7 7 6 88 2222222 8 0 0 4 6666 8 8 8 2 33 0000 5 555 000 0 5555555555555555 0 7 7 7 7 7 0 0 0 222 0 2 000000000 22 555 2 5 2 000 0 222 2 0000 55 0 4 88 0 1111 0 7 99 6 0 7 7 22 7 00 888 8 4 8 4 8 0 44 0 00 0 8888888888888 2 2 55 88 0 0 2 55555 0 88 0 8888 0 555 22222222 0 5 5 0 8 0 3333 3 7 7 3 7777 333 3 0 0 7 0 0 3333 3
consensus : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCGAGGNGTAAAGTCTGGTGGGGCTTAGCNCANGTTCATTCTAGCAAANTCATTCGATTTTATTCAATTGCCATTTTCTCCTTGTTTT-TTC-TTTCCAGNGTCGNTCCA-GTTAGGGTTATG-GTCAATAACCACNACCGTC----ATGTCTTCCCAT--------------T--------TGT--CC--CGAGATCGAAATGCTCC----------GCGAC--------TG---G-T---------CTTAATG-GTGGACC----GGTGGTTGTTGATTCTTCTACGGAGGTCACCT-GTTTCACCTACGTACTGC-TTTTGG---CANACCTTACAACCGATAAGGTAGACGCAGTTGTCCGTGCGACA-GGACGTNGCT-CCCAANATTTTGTAGCTNCG-NCCTGTGACAGGGCTGCTGAAANTGTCAG----T--GC---C---GCTGCGTTTGCACATNAGGCATCT-G-C--A-TCNGA--ACANGTNTTGAAACCNCCGTTGGGTAATGGGTTATCCAGCCTAGTTCTAACTACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATNG-GNGGNTCTTTG--AAGACCCTAGCCATTCNTTNGTTGNTGTGNAGAATGGGNAAATG-----NCT-TC-TCAGGATGNTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCG-CCT-TCTTCTCT-C-GNTTATATTGAAGNAGGGATTCTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGNTTGCACT-TGGG-G--GCTTTG-TAGCCTCTCTTGCACAGGTGNTTTTTC--GATGG-NTGCT-TTGTTC-TT-A---TAA--C-GNAA---CAGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCCTTAGGTACTCCTTTGAAGGTATGAGGT-GG-TGACAA-C-T-GATGGCATGGNATATATAAATGTGAGTCAGCGGGTTTNGTGTGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANCGTG---GAAGTG----GTATCCAAGAATACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----ATAAAGTTNTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAA-GG-CGATTGTCTGAGT-AAGTTGCGTTCAAATCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCACTNACTTGTAAGTAATGTTCGCCGTTGAACGCGAAGTTATTGAGTTTGAGGACATNA--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTGTCAGGGCCCTGCTATCCCAANCCTCTCTGCAGGCTTCAATGCCTTCCATCGTGGGGGATGTTCGTGTAAAGCGAAGTCGTATCCATGGTCGCGAGGNGAATATNGTCNGGCAGGTTNNAANAAAGGT--TTTTG--TTA-AGGTAACCAGTNGTGTCCTTCAGGTATGACGGTAG---CTTNACAACGTGCGGACG----GAGATGTAGGTCAATGAATT-CTGAGATTTTCTCCGTGGGGTGTCCGATGGCACTCACTATGGGACGGCCAGGCATGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GGTCTA--CAGTCGAG--AGGCAGCAATGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTNTCGNTGATNGTGGCAGAAAACGTT--TTNGTGGGGTCGGAGTCCAG-T-------TNTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCCGCTACGTATG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CCG---TTNTTTT---AGC--CT---NAAGGNCAGCTCTCTCTTCTTTGCTNAGATTGTCC-GGAATA-TT-CTGTTTCGTCGAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTNGATGTAGGACTCGANGGCCGCACATTTTNCTANTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAG-AGTTT
Reference ( family-3283 ) : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCGAGGNGTAAAGTCTGGTGGGGCTTAGCNCANGTTCATTCTAGCAAANTCATTCGATTTTATTCAATTGCCATTTTCTCCTTGTTTT-TTC-TTTCCAGNGTCGNTCCA-GTTAGGGTTATG-GTCAATAACCACNACCGTC----ATGTCTTCCCAT--------------T--------T--------CGAGATCGAAATGCTCC----------GCGAC--------TG---G-T---------CTTAATG-GTGGACC----GGTGGTTGTTGATTCTTCTACGGAGGTCACCT-GTTTCACCTACGTACTGC-TTTTGG---CANACCTTACAACCGATAAGGTAGACGCAGTTGTCCGTGCGACA-GGACGTNGCT-CCCAANATTTTGTAGCTNCG-NCCTGTGACAGGGCTGCTGAAANTGTCAG----T--GC---C---GCTGCGTTTGCACATNAGGCATCT-G-C--A-TCNGA--ACANGTNTTGAAACCNCCGTTGGGTAATGGGTTATCCAGCCTAGTTCTAACTACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATNG-GNGGNTCTTTG--AAGACCCTAGCCATTCNTTNGTTGNTGTGNAGAATGGGNAAATG-----NCT-TC-TCAGGATGNTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCG-CCT-TCTTCTCT-C-GNTTATATTGAAGNAGGGATTCTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGNTTGCACT-TGGG-G--GCTTTG-TAGCCTCTCTTGCACAGGTGNTTTTTC--GATGG-NTGCT-TTGTTC-TT-A---TAA----GNAA---CAGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCCTTAGGTACTCCTTTGAAGGTATGAGGT-GG-TGACAA-C-T-GATGGCATGGNATATATAAATGTGAGTCAGCGGGTTTNGTGTGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANCGTG---GAAGTG----GTATCCAAGAATACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----ATAAAGTTNTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAA-GG-CGATTGTCTGAGT-AAGTTGCGTTCAAATCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCACTNACTTGTAAGTAATGTTCGCCGTTGAACGCGAAGTTATTGAGTTTGAGGACATNA--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTGTCAGGGCCCTGCTATCCCAANCCTCTCTGCAGGCTTCAATGCCTTCCATCGTGGGGGATGTTCGTGTAAAGCGAAGTCGTATCCATGGTCGCGAGGNGAATATNGTCNGGCAGGTTNNAANAAAGGT--TTTTG--TTA-AGGTAACCAGTNGTGTCCTTCAGGTATGACGGTAG---CTTNACAACGTGCGGACG----GAGATGTAGGTCAATGAATT-CTGAGATTTTCTCCGTGGGGTGTCCGATGGCACTCACTATGGGACGGCCAGGCATGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GGTCTA--CAGTCGAG--AGGCAGCAATGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTNTCGNTGATNGTGGCAGAAAACGTT--TTNGTGGGGTCGGAGTCCAG-T-------TNTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCCGCTACGTATG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CCG---TTNTTTT---AGC--CT---NAAGGNCAGCTCTCTCTTCTTTGCTNAGATTGTCC-GGAATA-TT-CTGTTTCGTCGAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTNGATGTAGGACTCGANGGCCGCACATTTTNCTANTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAG-AGTTT
gi|1 : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCAAGGTGTAAAGTCTGGTGGGGCTTAGCTCAAGTTCATTCTAGCAAATTCATT-GATTTTATT--ATTGCCAATTTCTCTTTGTTTTATTC-TTTC-AGAGTCACTCCA-GTTAGGGTTGTG-GTCAATAACTACGACCGTC----ATGTCCTC---T--------------T--------A--------CGGGTTCGG--TGATTC----------GT--T--------TG---G-T---------CTTTATA-ATATACC----GGTGTTTGTTGACTCTTCTTCGGAGGTCACCT-GTTTCACATACCTACTGC-TTTTGG---CATTTCTTACAACTGATAAGGTAGGTGCAGTTGTCAGTGCGGCA-GGACGAAGCT-CCCAAAATTTAGTAGCTCTG-TCCTGTCACCGGACTGCTGAAAGTGTCAG----TTGGC---CC--GCTGAATTTGCACATGAGGCATC--A-CTTA-TCAGA--ACACGTGATGAAACCCCAGTTGGGTAATGGGTTATACAGCCTAGTTCTAACTACAATGTCCTTTATATTTCAAGGT-TG--TCTGAAGGCCG-CCATTG-GAGGGTCTTTA--AAGATCCTAGCCATTCGTTTGTTGTTATGCAGAATGGGCAAATG-----GCT-TT-TAAAGATGGTATTGAGGTTCTTCAGGGCGTGATGAAATGTAGTAACTAAATGGA---CT-CTATTG-CCT-TCTTCTCTCC-GGTTATATAGAAGCAGAGAGTTTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGCTTGTACT-CGAACA--GCTTTA-TAGCCTCTTTTACATAGGTGGCTTTTC--AAGAGTCTGCT-TTGTTT-TT-C---TAATTCCGAAC---CAGA--G--GAACAGATACGACGAA-CTCGT-GTAGCTAA--AACCTTAGGTACTCCTTTGAAGGTATGAGATGGG-TGACAG-CTT-GAAGGCAT--CATGTATAAATGTGAGTCAGCGGGCTTTGTGTGGAGGTTG------AATTC---------A--ATTTTATCATTCAAGAGAGTG---GAAGTG----ATATCCAAGAATATGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGGTGAAATGAGT---TGG-------------------TAAAGTTTTCAAGCCTATCTCG-GCCCTCCTTCCATTTCATTTCAATGTCATCAATGAAACACAACCAACTATGGGGTTTAAAGGG-CGATTGTCTGAGT-AAGTTGTGTTCCAATCTTCCCATGAAAATGTTGGGATACGAATGAGCCATTTTCGTTCCCATAGCTGTGCCACTAACTTGTAAGTAATGTTCGCCGTTGAACACGAAGTTATTGAGTTTGAGGACATAA--TCAAGGAGCTTGACCAATTATTCTGTGGAAGGA---TGTGTCAGAACCCTGCTATCCCAAACCTC----------------CCTT-CATCGTGGGAGATGTTTGTGTGAAGCAAAGTCATATCCATGGTTGCGAGAAGGATATTATCAGGTAGGTTGGAAGAGAGGG--TTTTG--TTA-AGGTAATCAGTGGTGTCCTTCAAGGATGATGGTAG---TTTAACA---TGTAGGCG----GAGGTGTAGGTCAATAAATT-CTGAGATTTTCTCCTTGGGGTATCCAATTGCACTCACTATAGGGCGGCCAGGCATACCTTCTTT--GTGGATTTTAGGCGGTAAATAAAATTGTCCA-GGTCTA--CAGTTGAG--AGGCATCAATGTTTCAAAGACAT--TATTACCAATTTTCTCGTCTTTGTACATTTGCTCAAGAGTGTCGTTGATTGTGGCAGAAAACGTT--TTGGTGGGGTCGGAGTCCAG-TTTAGCAGTTTAGTGTAAAACCGTTCATCCGGGACATGTCTGTGCGCTTCCGCTGTGTATA-TTATCTTGTCTAATACCACCAATGTTGACCCTCTGTCTGCTTTTTTTTT-TTATAACAATGTCATC-CCGT--TTGTTTT---AGCT-CT---TAAGGCTAAC-CTCTCTTATTTGCTTAACTTGTCCGGGAATATTT-CTGTTTTGTTGAG-TAG--T-TTTTCAATGTC---CTGCTCAACTAATTCGATGTAGGGCTCGATGGCTGCACATGTTCCTATTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAGTAGTTT
gi|10 : ACTGC-TTCTGATGACAAACTTTGCAACCGAGGAGATAAACAAAGTTATT-----------GAAGTCGC---CTAATATTCTGTAACTACG-GTCTGTGATAGGACTGCTGAAGGTCTCAGGGGGT--AG---A---GTTGTATTTGCA--TAAGATATCT-G----A-GATGATGATAGATCTTAAATCCTCCAATCGGTAATAGGTTGTCCAGTCTAGTCCTCACCAATATGTCCTTTATGTTCCT-GGTGCA--CCTAAGGGCAGTCCGTAG-GTGGACCTTT------------GTCATTCGTTGGTTCTTGTGTAGAATAG--AAATG-----A-------CAGGATGGT----AAG----------------------TGGTGACTAAG-GGA---CC--------CCT-GCTTCTCT-C----TACATTGTAAAATAGATCGTCTGTCTTGTTC-GGTTAACTCATCAACTG
gi|11 : CCTGTGATAGGACTGTTCAAACTTTCAG----T--GT---CTGAGCTACATTCGCACAATTGATGTCT-G-A--GGTCTGA--GCATATGTTGAAACCTCCATTAGGTAAAGAATTATCCAGTCTATCCCTAACATCCATGTCCTTTAGGTTTCTAGG--CG--TCTGGAGGACG-GCATAG-GGGACTCATTG--AAAACATCAGCCTTTCATTTATTGGGATGCAGAATGGGCAGATA-----CCG-TC-TCGAG-------------TCTTGAGGGCGGGATGGTATGTAATagg
gi|12 : AA---GAGA--GA-GAGCA--TGTGACAAAACTCTT-GTGCCTAC--ACCTTTAGGTACTCTTATAAAGGTATAAAGT-GG-------------ATAGCATAAGATACA-GAATA-GAATCCACAGACTTTGTATGGAGGCTGCATCAGAATTCTTGCATAATG--ATTTCATCATTtttgaggtaaatgacttttgaggatctttccttgtttt
gi|13 : aaaacatccttttaacagatagctttgcttttaaatactctactctgttttggaatgctgtgggagATGATGGTAG---CTTCATAGCATATGGACATGCAGAGATGTAGGTCAATCAATT-CTGAGATTTGCTCCGTGGGGTGCCCAATGGCACACACTATGGG-TGACCAGGCACACCCTCCTT--GTGGATTTTAGGCAGTAGATAGAATTGCCCA-GGTATATACAGTTGAG--AGGAAGCAATGTTTCAAAGACAT--TTTCACCAATTTCCTCGTCTTTGT-----------AGAGTTTCACTGATGGTGGCAGAAAACGCT--TTattgagattaacaaaattgggaacattttcaag
gi|14 : aaaA--CAGTTGAG--AGGCAGCAATGTTTCAAAGACA-------ACCAATTTTGTCATCTTTGTACATCTGCTTAAGAGTGTCGGTGATTGTGGCAGAAAACGTT--TTGGTAGGGTCGGAATCCAG-T-------T-TAGTGTAAAACCGTTCATCCGAGAGTTGTCTATGCGCTTCCTCTA--TATG-TTGTCTTGTCTAATACCACCACTGTTAACg
gi|15 : TAGTATGGAGGCTG------AATTTT--------A--ATTTCACCATTCCAGAATGTG---GAAGTG----GTATCCGAGAATACGTTCTTGGAGCTAGAAATTTC---------CA---------CTGTAAATTTTATG--GAA---TGATGAAATGAGT---TAG-TTAAGGA----A-----ATAAAGTTTTCAAGTTTATCTCG-GCCCTCCGTCCATTTCATCTCAATGGCATCAATGAAATGCAACTAACTATGGGGaatgtcatactggttttatcaaaatgtc
gi|17 : acaagtgtgaataGTG---GAAGTG----GTATCCAAGAATACGTTCATGGAGCTGGAAATTTC---------C--------------------------------------AATG----------------------------TAA---TCT---GTCTATTTTC-GCCCTCCGTCCATTTCACCTCAATG---------AAACGCAACCAATTATGGGGTTTAAA-GG-AAGTTGTCTGAGC-AAGTT-----------TTCCAATGAAAATGCGGGGATACGATGGAGTCATCTTCGTTCCCATAGCTATGCCACTTACTTGTAAGTAATGTTC
gi|18 : aTCATGTTTCT--GT-TGCCTCTGAAGGATG-TCATAGTGGGGGTCTTTG--AAAACATAAGACGTTCATTTGTCGGCCTACTGAATGGGTAGACA-----TTT-TC-TCAGAATGCATTTGAAATACTTGAGGGCGGGATGGTAAGCAGT
gi|2 : atcagtattgaATTGTATGAGG-ATGTTGCGTTCAAGTCTTCCCATGAAAATGTTGGCATACGATGGAGCCATCTTTGTTCCCATAGCTGTGCCACT----TGTAAGTAATGTTCTCCGTTGAACATGAAGTTGTTGAGTTTGATGATATGT--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTG---GGGCCTTGTTATTCCAACCCTCTCTGCAGGCTTCAATGCCTTCCATCATAGGGGATGTTCTTATAAAGTGAAGTCACATCCCTGGTCACAAGAAGAATATTGTCAGGTAGGTTGGAAGAAGGGT--TTTTG--TTA-TGGTAGCTAGTA-----------GTATGATGGTAG---CTTTACAACATGTGGTCG----GAGATGT---CCAATGAttgtcattttgaggttttctctgtattgtttga
gi|2 : GAGATGTCCAATGACACC----ATGGGACGGCCAGGCATACACTCT------G---TTTAGGGGGTAGATAAAATTGTCCA-GATCTA--CAGTTGAG--AGAAAGCAGTGATACAAAGACAT--TGTCACCAAGTTCCTTGTCTTTGTACATCTGCTTAAGAGTTTTTGTGATGGTGGCAAAAAACGTT--TTCGTAGGGTTGGAGTCCAG-T-------TA-AGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGTGCTTCTACCATGTATG-TTTCCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTTGTTA--ACAATGTCATC-CTG---GTCTTTT---AGC--TTTTGTAAGACTGAC-CT---TTCTTTCCTTAGATTGTCCTGGAACC-TTGCTGTTTTGTCAAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTGGATGTAGGACTCGAGGGCTGCACATTTTACTGATGGAGGTTCCAATTTGCTCTTAGTTC----GGTAG-AGTTTcaccatgggacggccaggcatacactctgtttagggggtagataaaattgtccagatctacagttgagagaaagcagtgatacaaagacattgtcaccaagttccttgtctttgtacatctgcttaagagtttttgtgatggtggcaaaaaacgttttcgtagggttggagtccagttaagtgtaaaaccgttcatccgagagttgtctgtgtgcttctaccatgtatgtttccttgtctaataccaccactgttgaccctttgtctgcctttttgttaacaatgtcatcctggtcttttagcttttgtaagactgacctttctttccttagattgtcctggaaccttgctgttttgtcaagtagtttttcgatgtcctgctcaactgcttggatgtaggactcgagggctgcacattttactgatggaggttccaatttgctcttagttcggtagagttt
gi|20 : attgtatgaggatgttgcgttcaagtcttcccatgaaaatgttggcatacgatggagccatctttgttcccatagctgtgccacttgtaagtaatgttctccgttgaacatgaagttgttgagtttgatgatatgttcaaggagcttgaccaacgattctgtggaaggaatttgtggggccttgttattccaaccctctctgcaggcttcaatgccttccatcataggggatgttcttataaagtgaagtcacatccctggtcacaagaagaatattgtcaggtaggttggaagaagggtttttgttatggtagctagtagtatgatggtagctttacaacatgtggtcg-G--GCTTGG-TTGCCTCTCTTGCAC--GTTTTTTTTT--GATGG-ATGCTCTTGTTC-TT-A---TA-----GAAAGTGCAGA--GTAGAGCAGATATGGCGTA-CTTG--GTGGCTAA--ACCTTTAGGTA-----TTG--GGTA-GA-----A-TGGCAA-C-TAGATGGCATGGAAT-TATAAA
gi|21 : a-G--GCTTGG-TTGCCTCTCTTGCAC--GTTTTTTTTT--GATGG-ATGCTCTTGTTC-TT-A---TA-----GAAAGTGCAGA--GTAGAGCAGATATGGCGTA-CTTG--GTGGCTAA--ACCTTTAGGTA-----TTG--GGTA-GA-----A-TGGCAA-C-TAGATGGCATGGAAT-TATAAAatacatcacgaggcagccgagt
gi|22 : a-T---------TTTAATG-GTAGACC----GGTGGTTATAGATCTTTCAACATAGATACCCTAGTTTCACCTACGTAGCG----TTGGTCACAAACTTTGCAACTTTTAAGATAGATACAGTCGTCCGTGCGACA-GGATGTGTCC-TCAAGGA--TTATAATATAA-GCCAGTGGCAGGGCTatacatcacgaggcagccgagt
gi|24 : tcTTTTTCCT-GTCTT-TTC-CTCTCTGCATCGGTCCATGTT-GGGTTATA-ATCGATAATCACCACCTGC----ATATCTct
gi|25 : atgcgcacgaaatcattcagtttgttcattccatctgggcggaatgatttcaagcgatgcatctatgaACATATAGATGGCAGTTAGCAGTTTTGGCGTGGAGCCTG------AACTC---------G--ATATTTCCGTTAACGACCTTA---GACGTG----CTGTCTAGAAAGACGATAGTGGATGTGGAAAT
gi|27 : aggaggatggcgggattagatatAGGCGAATTTGGTGTTGCAGGT-CCAATAAATGTAATTTTAATTTA-GGGTAACCATTCGGGTCCTTAAGGTGTGACGGTAAATCCTTTACA---TGCTGACG----GGG
gi|28 : tgaaagttcaataattatcCTTTA-TAGCCTCTCTTGCACACATGGTTTTTC---ATGG-TAATT-TTGTTC-TTGA---TAAAGT-GCAA---GATT--G--AAACAGATGCGATGGA-TTCGA-AGGGCTAAGTACTCTCAGGTATTCCTTTg
gi|29 : TGGGATGTCCTGTAGCAATGACTATTGGACTTCCATGCATGTTTTTTTTTTATGAATTTTAGGAATTAAGTAAA-TTTTCCT-GATCTA--CAGTCG
gi|3 : TGAAACCCCCGATAGGTAGTGGGTTATCCAGCCTAGTTCTGACTACAATGTTCTTTAAATTTCTAGGT-TG--TCTGAAGGCCT-CCATTG-CAGGGTCTTTA--AAGACCCTAGCTATTCTTTCGTTGTTATATAGAATAGGTAAATG-----GCT-TT-TAAGGATGGTATTGAAGTTCTTCAGTGCGGGGTAAAATGTAGTCACTAAGGGGA---CT-CTATTG-CCT-TCTTCTTT-CTGTTTATATAGAAGCAGGGAGTTTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGGTTGTAC--TGGA-GCAGCTCTA-AAGCCTCTTTTACATAGGTGACTTTTCAGGA-GT-TTGCT-TTGTTT-TG-AGTTTAATTTCGTGA---CAGA--G--GAACAGATACGACAAA-CTTGT-GTTGCTAA--ACCCTTAGGTACTCCTTTGAAGATATGAGGTGGG-TAACAGCC-T-GAAGGCAT--CACATACCAGTGTGAGTCAGTGGGTTTTGTGCGGTGGCTG------AATTC---------A--ATTTCACCGTTCATGAGAGTGATCGAAGTGGTAAGTATCCAAGAATACGTTCTTGGAGCTTGAAATTTC---------CT---------T-----------TG--TAAATTTAATGAAATGAGGAAATGG-T-----A----AAGGAGATAAAATTTTCAAGTCCATCTCG-GCCCTCCTTTCTTTTCAACTCAATGTCATCTTTGAAACCCAACCAACTATGAAGTTTAAA-GGCCGATTGTCTGAGTAAAGTTGCATTCAACTGTTCCCATGAAAATGTAGGCATACTATGGAGCCAttggaacaaagcacttc
gi|30 : TCAATAACCACCACCGTC----ATGTCTTCCCATGCATATGAGTGTCCC--------T--------CGAGATGAAAATGCTCG----------GCGAC--------GG---G-T---------TCT------TGGACC---------CTTTTGGTTCTT
gi|31 : ACGTTTTTCAGATTTCCTGGG-CG--TCTGAAAGCCA-CCATGG-ATGGTTCTTTG--AAGACCATGGCCATTCTAGAGGTAATGTGAAGAGTGGGAAAATG------CT-TC-Tatggtagaccgatga
gi|33 : ttcagGTTAATGAATTTCTGGGATTTTTTCCGTGGGGTGTCCG-------TCA------GACACCCTGACATGGCTGTTTT--GTGTATTTCGGGTAGCAAATAAAATTGTTCA-tc
gi|34 : TG-ATCAATAACAA--AC--TCATGAATGTCATCCCAT--------------TCAGGACCAT--------TGAGGCTGAGACGTTCC----------ATAAC--------TGGTTG-T---------TTTGACG-GTGGATC----GGcttc
gi|35 : agaatagTTGTCTGC-----TTTT-TTATGACTATGTCGTCACCGGTTTTTTTTT---AGCAATT---GGAGGACAGCTCTCTCTTCTTTGCTGAGATTGTCT-G
gi|38 : ACAATGGGGCGGCCAGGAATATTCTGTTT--GTGTATTTTAGGAAGCATGTAAAATa
gi|39 : ctactgcagatTCAATAATCACTACTGTC----ATGTCTTTCCAT--------------T--------TGTTGAATGCAAAATTAAAATGCTCG----------GTGAC--------
gi|4 : aAGAATTATG-GTCAATTACCACTACTGTC----ATATCCTCCCAT--------------C--------TGTGACCATTAAGATTGAGGTGTTCC----------CCGACGGGCTCTTTG---G-TTCTTTTTGTCCTAATG-GTGGATC----GGTGGTTGTTTATTCTTTGGCGGATGTCACCC-GTTTCTCCAACATATTGC-TTTGAG---CAAACCTTACAATTG---AGATACACACAGTTGTCTGTGTGACA-GGACAT-GTTACCCAATATTTTGTAGATGCG-ACCAGTAAC-GGGCTAGTAAATTTGTCAG----T-----------GCTGTGCTTACACAAAAGGCATCTGG-C--A-TCGGA--ACAAGTTTTAAAACCACCATTGGGTAATGGGTTGTCTAATTTCGCTCTCACTACCATGTCCTT----TTCCTAGGC-CG--TCTAAATGCAG-CCATTG-GTGGATCCTTGAAAAGATCC--GTCATTCTTTTATTATTGTGAAGAATATGTACATGTAGATTCTCTC-TCAGGATGCTGTTAAAGTTCTTAAGGACGGGGTGAAATGTTGTGAC-ATGTGGAACCCTACTATTGTCTT-TCTTCTC-----ATTGTATTGAAAAAGGGTTTCCCTGTT-CTTTGTGGTTATCTCATCAATTGCGGATTGCACTGTGTG-G--GCTTTG-TAGCCTCGATTACACAGATG
gi|40 : gCAGGTTTTAAAGCCATCATTGGGTAAAGGATTTTCCTACTTGGTTCGAACCACCATGTCTT
gi|5 : G--TCTGAAGGCTG-TCATGT-GTCGTTCTTTG--AAGATCATGGCCATTCTAGGGGTAATGTGAAGAGGGGGGAAAT------ACT-TCTTCAGAATTTTGTTCAAATCTTTTAAGACAGGGTGGTACGTAGTGACCACTGGGA---CT-ATGTCA-CCTATCGATTCG-T-GTTTGTATTGTAGTAGGGATTCTCTGTCGTGTTCT-GACATCTCATCAACAGCTGCTTGCACT-TTGG-G--GGTTTGATAACCTCTCTTGCACAGATG--TTTTA--GATGG-GTGCT-CTGTTCTTT-A---TGA----AGTG---CAGAGTG--GAGCAGGTACGACGGA--TTGTGGTGGCTAC--ACCTTTAGGTACTACTTTGAATGTATCAGTA-GGATGACAA-C-T--ATG-------AGATACAAATTTGAGTCAGTCGGTTTGGTATGGAGACTG------ATTTC---------AACATTT--CCGTTAAAAATCTTG---TTAACA----G-A---AAAAAGACGTTACTGGATGTGGAAATATCAACAGTTAACA---------TGA---------TC--AAA---TTATGGAATGAGT---TGGCT-----AGTTTA-----ATAAAGATGTCAAGATT-TCTCATACTTTTTACCCACTTCGTCGCAAT
gi|6 : AATT-CAGATAATCTCTCCGTGGGATGTCTGATGGCACTGACAATGAGTCGACCAGGCACGCCTTCTTT--GTGAATTTTAGGGAGAAAATAAAACTG-CCATGGTCTG--CAGTC-AGCCGGACAG-AGTGCTTCGTAAACGTAGTCTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTCCTCTGTGGGGTCTGAATTCAGCT-------TCT--TGTAATACTGCTCATCAGATAGCTGCCTGTTGGCTTCAGCTACATACGATTCTCT-GTCTAGAACAACTACTGTAGACCCTTTGTCTG----CTTTCT-TTACGACAATATCGTC-ACG----GGTTTTGAGAGA--CT---GAAGGGCAGCTCTCTCTTCCTTGTTGAAGTTATCC-GAAATA-TA-TGG--TCGTTGAGACAGGATATCTTCGATATTAGACTGC---ACTGCGTAGATATAAGATTCCAAGGCCCCACATTTTTCAAGTGGAGGTTCCCAGGGATTCTTAGGCTTACAAGTAG-AGTTTcaacttacagacc
gi|7 : CCAACAAAATATTCTTGAAGTTGGAAATTTC---------CACCGTGAACCT-----------TGTAGAA---TAATGGAAAGAGT---TTG-C-----A----GTCATGATAAAGTCATAGAGGCTTTCGCG-ACTTTCAAACCACTTCATTTCAATGTTATATGTGAAATGTAGCCAACTACGAGGTTTA-------GATAG--TGAAT-GA-TTCCATT---ATCTT--TATAAAA-------CCCAAAATGGTGTAATTTTTGTTCTCATAGTTGTGCCACTGATTTACAGATAATATGAGTCCAAGAA-GCTAAGTGATTCAGTTGAAGAACATTACCTCAAG
gi|7 : ATGTATGTGTAAAGTGAAATAGTATCCATGGTCACAAGGCGAGTATGGTCTGGCGGGGTTTAATATAGGT-----------ACATGTAATCAGATGTGTTCTTCAGGTATGACGGTAA---ATCGTCTATGTGCTGACG----GAGATGCAAGTCATTGAATT-CAGATATTTTATCTTTGGGGTGTCtgtaatgtatgtgtaaagtgaaatagtatccatggtcacaaggcgagtatggtctggcggggtttaatataggtacatgtaatcagatgtgttcttcaggtatgacggtaaatcgtctatgtgctgacggagatgcaagtcattgaattcagatattttatctttggggtgtc
gi|8 : ccaacaaaatattcttgaagttggaaatttccaccgtgaaccttgtagaataatggaaagagtttgcagtcatgataaagtcatagaggctttcgcgactttcaaaccacttcatttcaatgttatatgtgaaatgtagccaactacgaggtttagatagtgaatgattccattatctttataaaacccaaaatggtgtaatttttgttctcatagttgtgccactgatttacagataatatgagtccaagaagctaagtgattcagttgaagaacattacctcaagtgtaCAATGAAATTTAC-ACGAGTATAGGTTGTGAAGAGAGGCGAGGAGTAAAGTCTGGT-GGGCTTAACATACGTTCATTCT-GCAAAGTCATTCGATTTTATTCAATTGCCATTTT
gi|8 : ATTTTCTC-TTGTTTT-TTCGTTTCAAGAGTCACTCCA-GTTAGGGTT-TGCGTCAA-AACTACGACTGTC----CT-TCTTCCCAT--------------T--------TGTAACCCTCTAGGTTGAAATGTTCCCAACGGTTCGGTGATCCGTT---TG---G-T---------CTTAATAAGTGA--C----GGTGATTGTTGACTCTTCT-CGGAG-TCACCT-GTTTCACCTACGTACTGCTTTTTGG---CATTTCTTACAACCGATAAGGTAGAT-CAG-TG-CAGTACGGCAGGGACATAGCT-CCCAAAATTTTGTAGCTCTGTTCCTGTCACCGGGCTGCTGAAAGTGTCAG----T--gaggccgaaatgactttaaatctgtgcatcagaattttctcttgttttttcgtttcaagagtcactccagttagggtttgcgtcaaaactacgactgtccttcttcccatttgtaaccctctaggttgaaatgttcccaacggttcggtgatccgtttggtcttaataagtgacggtgattgttgactcttctcggagtcacctgtttcacctacgtactgctttttggcatttcttacaaccgataaggtagatcagtgcagtacggcagggacatagctcccaaaattttgtagctctgttcctgtcaccgggctgctgaaagtgtcagt
gi|9 : caatgaaatttacacgagtataggttgtgaagagaggcgaggagtaaagtctggtgggcttaacatacgttcattctgcaaagtcattcgattttattcaattgccattttgaggccgaaatgactttaaatctgtgcatcagaTCTCCTTATTTT-TTC-TTTCCA-TATTGGTCCA-GTGCACGTTTTG-GTCAATAGCCACTACTGTC----ATGTTTTCCCAT--------------T--------CATGTCCTGCGAGATCGAAATGCTCT----------GCAAC--------TG---ATT---------CTT------TCAACCATTTGGTAGTTATTGATCCTCCTACGTAAGTCTCCT-GTTTCATCTACGTATTGT-TGATCA---CAGAGCTTACAGTTTATGTTGGAAATGCAATTATCCGTGCGACA-GGCTGTTTCC-CCCAGAATTCAGTAGTGTCA-ACTTGTGACAGGACTCTTAAAACTGTTAC----T--TCTAGC---GCTGTGTTTGCATATCGGGCATCT-ACC--A-TCAGA--ACATG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TGGTGATAGACTCGCAGACAAAAAAATGAACGGCAACCCCCAACCCCCCCTCCCCCCCTCCAGAACAACACCTAATATTAACCACGAGTCAGAAACTATGTCACATTCATTTGTTTGTGTCATGTCATTGGAGGCAATGACCTCCAACCTAATACTGATAGGCATCCAAAACTTCTTGGAGCCTTTTTCGTTGTCTTGTCGCAATATCGACCCAGT
Unaligned ( gi|19 ): GGTGAAGTCATTTAAGTTTATTCAAACCATCAGGGCAAAATGACTTCAGTCTACTTTGTCCAGAACTTCTCCTTGCCTATTCTCTCTGCATCAGAGAGGCATCTAGAGTCGTGATCTGTCATATCCTTCCATCTATGGCCATTAAGGCTGAAGTGATCCCCAACAGATTC
Unaligned ( gi|23 ): ATATTGCTCTAATGAACTGGTAATGGTTTAGCCCGTTGTCATCTTGGAAAAGTCATAGAGTTTGTTAATACCTTGATGTTCGAATGACTTCAGCCTATGCATTTAGAATTTCTCCTTTCGTTTTCTTTAAATATCTGACCA
Unaligned ( gi|26 ): GACTAGGACTGTCGATGAGATTCTCGGTGCTAGAGTTGTGTTTGCGTGATTCTAGACATCCTGATATCAGTATGTTAAAACTGCCTCCATTTAAGCATTAAATTGTTAAGTCTAGTCTTCATCA
Unaligned ( gi|32 ): AGCAAAGTAATTGAACTATTTTAAACCATCATGGTGAAATTACATCAGCCTGTGAATCTTCTCTTCTTCATCTCTGCAAAAGACTATCTAGACTCGTGAT
Unaligned ( gi|36 ): TCATTCTATTGAAATTTCTGGTATTTTTCCTGCCATAGGGGCGGAATGATTGCAATATATGCATCGATCAAGGAATGTTAT
Unaligned ( gi|37 ): ATGATGATGCTCAAACAAAGAATAAATGACAAAATCCCCCACAGAACAACACATAGTATTAACTAGGCGAAGCTAGACCAC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 11 1 1 1 1111 8888888888888888888888 5555555555555555555555555555555555555555 11111 1111 11 222 11 6666666666666666 333333333 11 1111111111 111 111 11111111 222222 1 11 111 1 11111 555555555555 22222 11 3333333333333333333 222 111111 444444444444 111 1111 1111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111 1111 1 1111 222 222 5555555555555555 1 222222222 11 111 222 1111 11 11 111 11 4444444444444 11 1 22222 1 11 1 3333 111 33333333 1 2 1111 1 2222 222 2222 1
lowQualScore : 5 1 5 1 1 5 1 5 88 6 3 0 0 9999 1 0 5 9 6 2 4 0000 0 3333333333333333333333 2 2 0 4444444444444444444444444444444444444444 66666 2222 1 00 3 1 8 77 333 1 0 3 77 9 6 7 00 1 1 77 4 1 1111111111111111 4 3 22 111111111 1 11 1 1 1 0 0 1 0 1 2 33 8 99 66 0 5 1 5 1 1 66 999 1 1 1 1 2 8888888888 5 000 3 11 3 0 33 0 3 1 8 444 44444444 8 888888 1 1 1 0 1 6 0 1 1 1 33 0 6 99 5 55 7 000 3 77 3 6 33333 000000000000 77777 1 5 44 77 6 0 7 7 5555555555555555555 222 7 2 5 1 1 999999 333333333333 3 1 44 111 4444 1 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 1 3 6 3 5 77 5555555 0 8 5 1 4444 0 3 0 0 77 9999 2 111 111 1 6666666666666666 5 0 0 0 0 0 1 1 1 555 1 1 222222222 11 666 0 2 0 444 1 333 3 7777 33 8 1 33 1 7777 6 1 77 6 1 1 6 11 0 11 111 3 1 2 0 0 1 11 1 11 1 1111111111111 1 0 00 00 0 1 3 66666 0 00 0 6666 1 777 11111111 1 5 2 1 0 0 7777 7 0 0 3 2222 333 7 1 1 0 1 1 8888 3
lowQualScore : . . . . . . . . .. . . . . .... . . . . . . . .... . ...................... . . . ........................................ ..... .... . .. . . . .. ... . . . .. . . . .. . . .. . . ................ . . .. ......... . .. . . . . . . . . . .. . .. .. . . . . . . .. ... . . . . . .......... . ... . .. . . .. . . . . ... ........ . ...... . . . . . . . . . . .. . . .. . .. . ... . .. . . ..... ............ ..... . . .. .. . . . . ................... ... . . . . . ...... ............ . . .. ... .... . . ............................................................................... . . . . . . . .. ....... . . . . .... . . . . .. .... . ... ... . ................ . . . . . . . . . ... . . ......... .. ... . . . ... . ... . .... .. . . .. . .... . . .. . . . . .. . .. ... . . . . . . .. . .. . ............. . . .. .. . . . ..... . .. . .... . ... ........ . . . . . . .... . . . . .... ... . . . . . . .... .
lowQualScore : 5 0 0 0 0 5 0 0 00 5 2 0 0 8888 0 0 6 0 7 8 2 6666 2 7777777777777777777777 7 3 4 6666666666666666666666666666666666666666 11111 1111 0 00 2 0 0 77 333 0 7 5 00 3 7 5 88 0 0 77 9 0 7777777777777777 6 2 44 222222222 0 00 0 0 0 7 3 5 3 0 3 44 7 33 99 2 0 0 0 0 0 99 444 0 0 0 0 8 9999999999 0 000 0 77 0 4 44 3 8 0 8 000 22222222 0 666666 4 4 0 6 4 0 8 4 4 0 22 2 7 22 7 77 5 222 2 77 3 7 33333 666666666666 11111 0 7 44 99 6 7 3 3 0000000000000000000 000 1 3 6 4 0 222222 222222222222 7 0 22 777 2222 6 3 2222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 0 5 7 7 6 88 2222222 8 0 0 4 6666 8 8 8 2 33 0000 5 555 000 0 5555555555555555 0 7 7 7 7 7 0 0 0 222 0 2 000000000 22 555 2 5 2 000 0 222 2 0000 55 0 4 88 0 1111 0 7 99 6 0 7 7 00 7 00 888 8 4 8 4 8 0 44 0 00 0 8888888888888 2 2 55 88 0 0 2 55555 0 88 0 8888 0 555 22222222 0 5 5 0 8 0 3333 3 7 7 3 7777 333 3 0 0 7 0 0 3333 3
consensus : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCGAGGNGTAAAGTCTGGTGGGGCTTAGCNCANGTTCATTCTAGCAAANTCATTCGATTTTATTCAATTGCCATTTTCTCCTTGTTTT-TTC-TTTCCAGNGTCGNTCCA-GTTAGGGTTATG-GTCAATAACCACNACCGTC----ATGTCTTCCCAT---T-----T--GT----CC-TCGAGATCGAAATGCTCC----------GCGAC--------TG---G-T---------CTTAATG-GTGGACC----GGTGGTTGTTGATTCTTCTACGGAGGTCACCT-GTTTCACCTACGTACTGC-TTTTGG---CANACCTTACAACCGATAAGGTAGACGCAGTTGTCCGTGCGACA-GGACGTNGCT-CCCAANATTTTGTAGCTNCG-NCCTGTGACAGGGCTGCTGAAANTGTCAG----T--GC---C---GCTGCGTTTGCACATNAGGCATCT-G-C--A-TCNGA--ACANGTNTTGAAACCNCCGTTGGGTAATGGGTTATCCAGCCTAGTTCTAACTACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATNG-GNGGNTCTTTG--AAGACCCTAGCCATTCNTTNGTTGNTGTGNAGAATGGGNAAATG-----NCT-TC-TCAGGATGNTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCG-CCT-TCTTCTCT-C-GNTTATATTGAAGNAGGGATTCTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGNTTGCACT-TGGG-G--GCTTTG-TAGCCTCTCTTGCACAGGTGNTTTTTC--GATGG-NTGCT-TTGTTC-TT-A---TAA----GNAA---CAGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCCTTAGGTACTCCTTTGAAGGTATGAGGT-GG-TGACAA-C-T-GATGGCATGGNATATATAAATGTGAGTCAGCGGGTTTNGTGTGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANCGTG---GAAGTG----GTATCCAAGAATACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----ATAAAGTTNTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAA-GG-CGATTGTCTGAGT-AAGTTGCGTTCAAATCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCACTNACTTGTAAGTAATGTTCGCCGTTGAACGCGAAGTTATTGAGTTTGAGGACATNA--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTGTCAGGGCCCTGCTATCCCAANCCTCTCTGCAGGCTTCAATGCCTTCCATCGTGGGGGATGTTCGTGTAAAGCGAAGTCGTATCCATGGTCGCGAGGNGAATATNGTCNGGCAGGTTNNAANAAAGGT--TTTTG--TTA-AGGTAACCAGTNGTGTCCTTCAGGTATGACGGTAG---CTTNACAACGTGCGGACG----GAGATGTAGGTCAATGAATT-CTGAGATTTTCTCCGTGGGGTGTCCGATGGCACTCACTATGGGACGGCCAGGCATGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GG--TCTACAGTCGAG--AGGCAGCAATGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTNTCGNTGATNGTGGCAGAAAACGTT--TTNGTGGGGTCGGAGTCCAG-T-------TNTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCCGCTACGTATG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CCG---TTNTTTT---AGC--CT---NAAGGNCAGCTCTCTCTTCTTTGCTNAGATTGTCC-GGAATA-TT-CTGTTTCGTCGAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTNGATGTAGGACTCGANGGCCGCACATTTTNCTANTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAG-AGTTT
Reference ( family-3283 ) : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCGAGGNGTAAAGTCTGGTGGGGCTTAGCNCANGTTCATTCTAGCAAANTCATTCGATTTTATTCAATTGCCATTTTCTCCTTGTTTT-TTC-TTTCCAGNGTCGNTCCA-GTTAGGGTTATG-GTCAATAACCACNACCGTC----ATGTCTTCCCAT---T-----T--GT----CC--CGAGATCGAAATGCTCC----------GCGAC--------TG---G-T---------CTTAATG-GTGGACC----GGTGGTTGTTGATTCTTCTACGGAGGTCACCT-GTTTCACCTACGTACTGC-TTTTGG---CANACCTTACAACCGATAAGGTAGACGCAGTTGTCCGTGCGACA-GGACGTNGCT-CCCAANATTTTGTAGCTNCG-NCCTGTGACAGGGCTGCTGAAANTGTCAG----T--GC---C---GCTGCGTTTGCACATNAGGCATCT-G-C--A-TCNGA--ACANGTNTTGAAACCNCCGTTGGGTAATGGGTTATCCAGCCTAGTTCTAACTACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATNG-GNGGNTCTTTG--AAGACCCTAGCCATTCNTTNGTTGNTGTGNAGAATGGGNAAATG-----NCT-TC-TCAGGATGNTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCG-CCT-TCTTCTCT-C-GNTTATATTGAAGNAGGGATTCTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGNTTGCACT-TGGG-G--GCTTTG-TAGCCTCTCTTGCACAGGTGNTTTTTC--GATGG-NTGCT-TTGTTC-TT-A---TAA---CGNAA---CAGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCCTTAGGTACTCCTTTGAAGGTATGAGGT-GG-TGACAA-C-T-GATGGCATGGNATATATAAATGTGAGTCAGCGGGTTTNGTGTGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANCGTG---GAAGTG----GTATCCAAGAATACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----ATAAAGTTNTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAA-GG-CGATTGTCTGAGT-AAGTTGCGTTCAAATCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCACTNACTTGTAAGTAATGTTCGCCGTTGAACGCGAAGTTATTGAGTTTGAGGACATNA--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTGTCAGGGCCCTGCTATCCCAANCCTCTCTGCAGGCTTCAATGCCTTCCATCGTGGGGGATGTTCGTGTAAAGCGAAGTCGTATCCATGGTCGCGAGGNGAATATNGTCNGGCAGGTTNNAANAAAGGT--TTTTG--TTA-AGGTAACCAGTNGTGTCCTTCAGGTATGACGGTAG---CTTNACAACGTGCGGACG----GAGATGTAGGTCAATGAATT-CTGAGATTTTCTCCGTGGGGTGTCCGATGGCACTCACTATGGGACGGCCAGGCATGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GG--TCTACAGTCGAG--AGGCAGCAATGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTNTCGNTGATNGTGGCAGAAAACGTT--TTNGTGGGGTCGGAGTCCAG-T-------TNTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCCGCTACGTATG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CCG---TTNTTTT---AGC--CT---NAAGGNCAGCTCTCTCTTCTTTGCTNAGATTGTCC-GGAATA-TT-CTGTTTCGTCGAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTNGATGTAGGACTCGANGGCCGCACATTTTNCTANTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAG-AGTTT
gi|1 : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCAAGGTGTAAAGTCTGGTGGGGCTTAGCTCAAGTTCATTCTAGCAAATTCATT-GATTTTATT--ATTGCCAATTTCTCTTTGTTTTATTC-TTTC-AGAGTCACTCCA-GTTAGGGTTGTG-GTCAATAACTACGACCGTC----ATGTCCTCTTA-----------------------CGGGTTCGG--TGATTC----------GT--T--------TG---G-T---------CTTTATA-ATATACC----GGTGTTTGTTGACTCTTCTTCGGAGGTCACCT-GTTTCACATACCTACTGC-TTTTGG---CATTTCTTACAACTGATAAGGTAGGTGCAGTTGTCAGTGCGGCA-GGACGAAGCT-CCCAAAATTTAGTAGCTCTG-TCCTGTCACCGGACTGCTGAAAGTGTCAG----TTGGC---CC--GCTGAATTTGCACATGAGGCATC--A-CTTA-TCAGA--ACACGTGATGAAACCCCAGTTGGGTAATGGGTTATACAGCCTAGTTCTAACTACAATGTCCTTTATATTTCAAGGT-TG--TCTGAAGGCCG-CCATTG-GAGGGTCTTTA--AAGATCCTAGCCATTCGTTTGTTGTTATGCAGAATGGGCAAATG-----GCT-TT-TAAAGATGGTATTGAGGTTCTTCAGGGCGTGATGAAATGTAGTAACTAAATGGA---CT-CTATTG-CCT-TCTTCTCTCC-GGTTATATAGAAGCAGAGAGTTTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGCTTGTACT-CGAACA--GCTTTA-TAGCCTCTTTTACATAGGTGGCTTTTC--AAGAGTCTGCT-TTGTTT-TT-C---TAATTCCGAAC---CAGA--G--GAACAGATACGACGAA-CTCGT-GTAGCTAA--AACCTTAGGTACTCCTTTGAAGGTATGAGATGGG-TGACAG-CTT-GAAGGCAT--CATGTATAAATGTGAGTCAGCGGGCTTTGTGTGGAGGTTG------AATTC---------A--ATTTTATCATTCAAGAGAGTG---GAAGTG----ATATCCAAGAATATGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGGTGAAATGAGT---TGG-------------------TAAAGTTTTCAAGCCTATCTCG-GCCCTCCTTCCATTTCATTTCAATGTCATCAATGAAACACAACCAACTATGGGGTTTAAAGGG-CGATTGTCTGAGT-AAGTTGTGTTCCAATCTTCCCATGAAAATGTTGGGATACGAATGAGCCATTTTCGTTCCCATAGCTGTGCCACTAACTTGTAAGTAATGTTCGCCGTTGAACACGAAGTTATTGAGTTTGAGGACATAA--TCAAGGAGCTTGACCAATTATTCTGTGGAAGGA---TGTGTCAGAACCCTGCTATCCCAAACCTC----------------CCTT-CATCGTGGGAGATGTTTGTGTGAAGCAAAGTCATATCCATGGTTGCGAGAAGGATATTATCAGGTAGGTTGGAAGAGAGGG--TTTTG--TTA-AGGTAATCAGTGGTGTCCTTCAAGGATGATGGTAG---TTTAACA---TGTAGGCG----GAGGTGTAGGTCAATAAATT-CTGAGATTTTCTCCTTGGGGTATCCAATTGCACTCACTATAGGGCGGCCAGGCATACCTTCTTT--GTGGATTTTAGGCGGTAAATAAAATTGTCCA-GG--TCTACAGTTGAG--AGGCATCAATGTTTCAAAGACAT--TATTACCAATTTTCTCGTCTTTGTACATTTGCTCAAGAGTGTCGTTGATTGTGGCAGAAAACGTT--TTGGTGGGGTCGGAGTCCAG-TTTAGCAGTTTAGTGTAAAACCGTTCATCCGGGACATGTCTGTGCGCTTCCGCTGTGTATA-TTATCTTGTCTAATACCACCAATGTTGACCCTCTGTCTGCTTTTTTTTT-TTATAACAATGTCATC-CCGT--TTGTTTT---AGCT-CT---TAAGGCTAAC-CTCTCTTATTTGCTTAACTTGTCCGGGAATATTT-CTGTTTTGTTGAG-TAG--T-TTTTCAATGTC---CTGCTCAACTAATTCGATGTAGGGCTCGATGGCTGCACATGTTCCTATTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAGTAGTTT
gi|10 : ACTGC-TTCTGATGACAAACTTTGCAACCGAGGAGATAAACAAAGTTATT-----------GAAGTCGC---CTAATATTCTGTAACTACG-GTCTGTGATAGGACTGCTGAAGGTCTCAGGGGGT--AG---A---GTTGTATTTGCA--TAAGATATCT-G----A-GATGATGATAGATCTTAAATCCTCCAATCGGTAATAGGTTGTCCAGTCTAGTCCTCACCAATATGTCCTTTATGTTCCT-GGTGCA--CCTAAGGGCAGTCCGTAG-GTGGACCTTTG------------TCATTCGTTGGTTCTTGTGTAGAATAG--AAATG-----A-------CAGGATGGT----AAG----------------------TGGTGACTAAG-GGA---CC--------CCT-GCTTCTCT-C----TACATTGTAAAATAGATCGTCTGTCTTGTTC-GGTTAACTCATCAACTG
gi|11 : CCTGTGATAGGACTGTTCAAACTTTCAG----T--GT---CTGAGCTACATTCGCACAATTGATGTCT-G-A--GGTCTGA--GCATATGTTGAAACCTCCATTAGGTAAAGAATTATCCAGTCTATCCCTAACATCCATGTCCTTTAGGTTTCTAGG--CG--TCTGGAGGACG-GCATAG-GGGACTCATTG--AAAACATCAGCCTTTCATTTATTGGGATGCAGAATGGGCAGATA-----CCG-TC-TCGAG-------------TCTTGAGGGCGGGATGGTATGTAATagg
gi|12 : AA---GAGA--GA-GAGCA--TGTGACAAAACTCTT-GTGCCTAC--ACCTTTAGGTACTCTTATAAAGGTATAAAGT-GG-------------ATAGCATAAGATACA-GAATA-GAATCCACAGACTTTGTATGGAGGCTGCATCAGAATTCTTGCATAATG--ATTTCATCATTtttgaggtaaatgacttttgaggatctttccttgtttt
gi|13 : aaaacatccttttaacagatagctttgcttttaaatactctactctgttttggaatgctgtgggagATGATGGTAG---CTTCATAGCATATGGACATGCAGAGATGTAGGTCAATCAATT-CTGAGATTTGCTCCGTGGGGTGCCCAATGGCACACACTATGGG-TGACCAGGCACACCCTCCTT--GTGGATTTTAGGCAGTAGATAGAATTGCCCA-GGTATATACAGTTGAG--AGGAAGCAATGTTTCAAAGACAT--TTTCACCAATTTCCTCGTCTTTGT-----------AGAGTTTCACTGATGGTGGCAGAAAACGCT--TTattgagattaacaaaattgggaacattttcaag
gi|14 : aaaACAGTTGAG--AGGCAGCAATGTTTCAAAGACA-------ACCAATTTTGTCATCTTTGTACATCTGCTTAAGAGTGTCGGTGATTGTGGCAGAAAACGTT--TTGGTAGGGTCGGAATCCAG-T-------T-TAGTGTAAAACCGTTCATCCGAGAGTTGTCTATGCGCTTCCTCTA--TATG-TTGTCTTGTCTAATACCACCACTGTTAACg
gi|15 : TAGTATGGAGGCTG------AATTTT--------A--ATTTCACCATTCCAGAATGTG---GAAGTG----GTATCCGAGAATACGTTCTTGGAGCTAGAAATTTC---------CA---------CTGTAAATTTTATG--GAA---TGATGAAATGAGT---TAG-TTAAGGA----A-----ATAAAGTTTTCAAGTTTATCTCG-GCCCTCCGTCCATTTCATCTCAATGGCATCAATGAAATGCAACTAACTATGGGGaatgtcatactggttttatcaaaatgtc
gi|17 : acaagtgtgaataGTG---GAAGTG----GTATCCAAGAATACGTTCATGGAGCTGGAAATTTC---------C--------------------------------------AATG----------------------------TAA---TCT---GTCTATTTTC-GCCCTCCGTCCATTTCACCTCAATG---------AAACGCAACCAATTATGGGGTTTAAA-GG-AAGTTGTCTGAGC-AAGTT-----------TTCCAATGAAAATGCGGGGATACGATGGAGTCATCTTCGTTCCCATAGCTATGCCACTTACTTGTAAGTAATGTTC
gi|18 : aTCATGTTTCT--GT-TGCCTCTGAAGGATG-TCATAGTGGGGGTCTTTG--AAAACATAAGACGTTCATTTGTCGGCCTACTGAATGGGTAGACA-----TTT-TC-TCAGAATGCATTTGAAATACTTGAGGGCGGGATGGTAAGCAGT
gi|2 : atcagtattgaATTGTATGAGG-ATGTTGCGTTCAAGTCTTCCCATGAAAATGTTGGCATACGATGGAGCCATCTTTGTTCCCATAGCTGTGCCACT----TGTAAGTAATGTTCTCCGTTGAACATGAAGTTGTTGAGTTTGATGATATGT--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTG---GGGCCTTGTTATTCCAACCCTCTCTGCAGGCTTCAATGCCTTCCATCATAGGGGATGTTCTTATAAAGTGAAGTCACATCCCTGGTCACAAGAAGAATATTGTCAGGTAGGTTGGAAGAAGGGT--TTTTG--TTA-TGGTAGCTAGTA-----------GTATGATGGTAG---CTTTACAACATGTGGTCG----GAGATGT---CCAATGAttgtcattttgaggttttctctgtattgtttga
gi|2 : GAGATGTCCAATGACACC----ATGGGACGGCCAGGCATACACTCT------G---TTTAGGGGGTAGATAAAATTGTCCA-GA--TCTACAGTTGAG--AGAAAGCAGTGATACAAAGACAT--TGTCACCAAGTTCCTTGTCTTTGTACATCTGCTTAAGAGTTTTTGTGATGGTGGCAAAAAACGTT--TTCGTAGGGTTGGAGTCCAG-T-------TA-AGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGTGCTTCTACCATGTATG-TTTCCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTTGTTA--ACAATGTCATC-CTG---GTCTTTT---AGC--TTTTGTAAGACTGAC-CT---TTCTTTCCTTAGATTGTCCTGGAACC-TTGCTGTTTTGTCAAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTGGATGTAGGACTCGAGGGCTGCACATTTTACTGATGGAGGTTCCAATTTGCTCTTAGTTC----GGTAG-AGTTTcaccatgggacggccaggcatacactctgtttagggggtagataaaattgtccagatctacagttgagagaaagcagtgatacaaagacattgtcaccaagttccttgtctttgtacatctgcttaagagtttttgtgatggtggcaaaaaacgttttcgtagggttggagtccagttaagtgtaaaaccgttcatccgagagttgtctgtgtgcttctaccatgtatgtttccttgtctaataccaccactgttgaccctttgtctgcctttttgttaacaatgtcatcctggtcttttagcttttgtaagactgacctttctttccttagattgtcctggaaccttgctgttttgtcaagtagtttttcgatgtcctgctcaactgcttggatgtaggactcgagggctgcacattttactgatggaggttccaatttgctcttagttcggtagagttt
gi|20 : attgtatgaggatgttgcgttcaagtcttcccatgaaaatgttggcatacgatggagccatctttgttcccatagctgtgccacttgtaagtaatgttctccgttgaacatgaagttgttgagtttgatgatatgttcaaggagcttgaccaacgattctgtggaaggaatttgtggggccttgttattccaaccctctctgcaggcttcaatgccttccatcataggggatgttcttataaagtgaagtcacatccctggtcacaagaagaatattgtcaggtaggttggaagaagggtttttgttatggtagctagtagtatgatggtagctttacaacatgtggtcg-G--GCTTGG-TTGCCTCTCTTGCAC--GTTTTTTTTT--GATGG-ATGCTCTTGTTC-TT-A---TA-----GAAAGTGCAGA--GTAGAGCAGATATGGCGTA-CTTG--GTGGCTAA--ACCTTTAGGTA-----TTG--GGTA-GA-----A-TGGCAA-C-TAGATGGCATGGAAT-TATAAA
gi|21 : a-G--GCTTGG-TTGCCTCTCTTGCAC--GTTTTTTTTT--GATGG-ATGCTCTTGTTC-TT-A---TA-----GAAAGTGCAGA--GTAGAGCAGATATGGCGTA-CTTG--GTGGCTAA--ACCTTTAGGTA-----TTG--GGTA-GA-----A-TGGCAA-C-TAGATGGCATGGAAT-TATAAAatacatcacgaggcagccgagt
gi|22 : a-T---------TTTAATG-GTAGACC----GGTGGTTATAGATCTTTCAACATAGATACCCTAGTTTCACCTACGTAGCG----TTGGTCACAAACTTTGCAACTTTTAAGATAGATACAGTCGTCCGTGCGACA-GGATGTGTCC-TCAAGGA--TTATAATATAA-GCCAGTGGCAGGGCTatacatcacgaggcagccgagt
gi|24 : tcTTTTTCCT-GTCTT-TTC-CTCTCTGCATCGGTCCATGTT-GGGTTATA-ATCGATAATCACCACCTGC----ATATCTct
gi|25 : atgcgcacgaaatcattcagtttgttcattccatctgggcggaatgatttcaagcgatgcatctatgaACATATAGATGGCAGTTAGCAGTTTTGGCGTGGAGCCTG------AACTC---------G--ATATTTCCGTTAACGACCTTA---GACGTG----CTGTCTAGAAAGACGATAGTGGATGTGGAAAT
gi|27 : aggaggatggcgggattagatatAGGCGAATTTGGTGTTGCAGGT-CCAATAAATGTAATTTTAATTTA-GGGTAACCATTCGGGTCCTTAAGGTGTGACGGTAAATCCTTTACA---TGCTGACG----GGG
gi|28 : tgaaagttcaataattatcCTTTA-TAGCCTCTCTTGCACACATGGTTTTTC---ATGG-TAATT-TTGTTC-TTGA---TAA---AGTGC---AAGATTG--AAACAGATGCGATGGA-TTCGA-AGGGCTAAGTACTCTCAGGTATTCCTTTg
gi|29 : TGGGATGTCCTGTAGCAATGACTATTGGACTTCCATGCATGTTTTTTTTTTATGAATTTTAGGAATTAAGT-AAATTTTCCT-GA--TCTACAGTCG
gi|3 : TGAAACCCCCGATAGGTAGTGGGTTATCCAGCCTAGTTCTGACTACAATGTTCTTTAAATTTCTAGGT-TG--TCTGAAGGCCT-CCATTG-CAGGGTCTTTA--AAGACCCTAGCTATTCTTTCGTTGTTATATAGAATAGGTAAATG-----GCT-TT-TAAGGATGGTATTGAAGTTCTTCAGTGCGGGGTAAAATGTAGTCACTAAGGGGA---CT-CTATTG-CCT-TCTTCTTT-CTGTTTATATAGAAGCAGGGAGTTTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGGTTGTAC--TGGA-GCAGCTCTA-AAGCCTCTTTTACATAGGTGACTTTTCAGGA-GT-TTGCT-TTGTTT-TG-AGTTTAATTTCGTGA---CAGA--G--GAACAGATACGACAAA-CTTGT-GTTGCTAA--ACCCTTAGGTACTCCTTTGAAGATATGAGGTGGG-TAACAGCC-T-GAAGGCAT--CACATACCAGTGTGAGTCAGTGGGTTTTGTGCGGTGGCTG------AATTC---------A--ATTTCACCGTTCATGAGAGTGATCGAAGTGGTAAGTATCCAAGAATACGTTCTTGGAGCTTGAAATTTC---------CT---------T-----------TG--TAAATTTAATGAAATGAGGAAATGG-T-----A----AAGGAGATAAAATTTTCAAGTCCATCTCG-GCCCTCCTTTCTTTTCAACTCAATGTCATCTTTGAAACCCAACCAACTATGAAGTTTAAA-GGCCGATTGTCTGAGTAAAGTTGCATTCAACTGTTCCCATGAAAATGTAGGCATACTATGGAGCCAttggaacaaagcacttc
gi|30 : TCAATAACCACCACCGTC----ATGTCTTCCCATGCATATGAGT--GT----CCCTCGAGATGAAAATGCTCG----------GCGAC--------GG---G-T---------TCT------TGGACC---------CTTTTGGTTCTT
gi|31 : ACGTTTTTCAGATTTCCTGGG-CG--TCTGAAAGCCA-CCATGG-ATGGTTCTTTG--AAGACCATGGCCATTCTAGAGGTAATGTGAAGAGTGGGAAAATG------CT-TC-Tatggtagaccgatga
gi|33 : ttcagGTTAATGAATTTCTGGGATTTTTTCCGTGGGGTGTCCG-------TCA------GACACCCTGACATGGCTGTTTT--GTGTATTTCGGGTAGCAAATAAAATTGTTCA-tc
gi|34 : TG-ATCAATAACAA--AC--TCATGAATGTCATCCCAT---T-----CAGGA----CCATTGAGGCTGAGACGTTCC----------ATAAC--------TGGTTG-T---------TTTGACG-GTGGATC----GGcttc
gi|35 : agaatagTTGTCTGC-----TTTT-TTATGACTATGTCGTCACCGGTTTTTTTTT---AGCAATT---GGAGGACAGCTCTCTCTTCTTTGCTGAGATTGTCT-G
gi|38 : ACAATGGGGCGGCCAGGAATATTCTGTTT--GTGTATTTTAGGAAGCATGTAAAATa
gi|39 : ctactgcagatTCAATAATCACTACTGTC----ATGTCTTTCCAT---T-----T--GTTGAATG--CAAAATTAAAATGCTCG----------GTGAC--------
gi|4 : aAGAATTATG-GTCAATTACCACTACTGTC----ATATCCTCCCAT---C-----T--GTGA--CCATTAAGATTGAGGTGTTCC----------CCGACGGGCTCTTTG---G-TTCTTTTTGTCCTAATG-GTGGATC----GGTGGTTGTTTATTCTTTGGCGGATGTCACCC-GTTTCTCCAACATATTGC-TTTGAG---CAAACCTTACAATTG---AGATACACACAGTTGTCTGTGTGACA-GGACAT-GTTACCCAATATTTTGTAGATGCG-ACCAGTAAC-GGGCTAGTAAATTTGTCAG----T-----------GCTGTGCTTACACAAAAGGCATCTGG-C--A-TCGGA--ACAAGTTTTAAAACCACCATTGGGTAATGGGTTGTCTAATTTCGCTCTCACTACCATGTCCTT----TTCCTAGGC-CG--TCTAAATGCAG-CCATTG-GTGGATCCTTGAAAAGATCC--GTCATTCTTTTATTATTGTGAAGAATATGTACATGTAGATTCTCTC-TCAGGATGCTGTTAAAGTTCTTAAGGACGGGGTGAAATGTTGTGAC-ATGTGGAACCCTACTATTGTCTT-TCTTCTC-----ATTGTATTGAAAAAGGGTTTCCCTGTT-CTTTGTGGTTATCTCATCAATTGCGGATTGCACTGTGTG-G--GCTTTG-TAGCCTCGATTACACAGATG
gi|40 : gCAGGTTTTAAAGCCATCATTGGGTAAAGGATTTTCCTACTTGGTTCGAACCACCATGTCTT
gi|5 : G--TCTGAAGGCTG-TCATGT-GTCGTTCTTTG--AAGATCATGGCCATTCTAGGGGTAATGTGAAGAGGGGGGAAAT------ACT-TCTTCAGAATTTTGTTCAAATCTTTTAAGACAGGGTGGTACGTAGTGACCACTGGGA---CT-ATGTCA-CCTATCGATTCG-T-GTTTGTATTGTAGTAGGGATTCTCTGTCGTGTTCT-GACATCTCATCAACAGCTGCTTGCACT-TTGG-G--GGTTTGATAACCTCTCTTGCACAGATG--TTTTA--GATGG-GTGCT-CTGTTCTTT-A---TGA---AGT-G---CAGAGTG--GAGCAGGTACGACGGA--TTGTGGTGGCTAC--ACCTTTAGGTACTACTTTGAATGTATCAGTA-GGATGACAA-C-T--ATG-------AGATACAAATTTGAGTCAGTCGGTTTGGTATGGAGACTG------ATTTC---------AACATTT--CCGTTAAAAATCTTG---TTAACA----G-A---AAAAAGACGTTACTGGATGTGGAAATATCAACAGTTAACA---------TGA---------TC--AAA---TTATGGAATGAGT---TGGCT-----AGTTTA-----ATAAAGATGTCAAGATT-TCTCATACTTTTTACCCACTTCGTCGCAAT
gi|6 : AATT-CAGATAATCTCTCCGTGGGATGTCTGATGGCACTGACAATGAGTCGACCAGGCACGCCTTCTTT--GTGAATTTTAGGGAGAAAATAAAACTG-CCATGG--TCTGCAGTC-AGCCGGACAG-AGTGCTTCGTAAACGTAGTCTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTCCTCTGTGGGGTCTGAATTCAGCT-------TCT--TGTAATACTGCTCATCAGATAGCTGCCTGTTGGCTTCAGCTACATACGATTCTCT-GTCTAGAACAACTACTGTAGACCCTTTGTCTG----CTTTCT-TTACGACAATATCGTC-ACG----GGTTTTGAGAGA--CT---GAAGGGCAGCTCTCTCTTCCTTGTTGAAGTTATCC-GAAATA-TA-TGG--TCGTTGAGACAGGATATCTTCGATATTAGACTGC---ACTGCGTAGATATAAGATTCCAAGGCCCCACATTTTTCAAGTGGAGGTTCCCAGGGATTCTTAGGCTTACAAGTAG-AGTTTcaacttacagacc
gi|7 : CCAACAAAATATTCTTGAAGTTGGAAATTTC---------CACCGTGAACCT-----------TGTAGAA---TAATGGAAAGAGT---TTG-C-----A----GTCATGATAAAGTCATAGAGGCTTTCGCG-ACTTTCAAACCACTTCATTTCAATGTTATATGTGAAATGTAGCCAACTACGAGGTTTA-------GATAG--TGAAT-GA-TTCCATT---ATCTT--TATAAAA-------CCCAAAATGGTGTAATTTTTGTTCTCATAGTTGTGCCACTGATTTACAGATAATATGAGTCCAAGAA-GCTAAGTGATTCAGTTGAAGAACATTACCTCAAG
gi|7 : ATGTATGTGTAAAGTGAAATAGTATCCATGGTCACAAGGCGAGTATGGTCTGGCGGGGTTTAATATAGGT-----------ACATGTAATCAGATGTGTTCTTCAGGTATGACGGTAA---ATCGTCTATGTGCTGACG----GAGATGCAAGTCATTGAATT-CAGATATTTTATCTTTGGGGTGTCtgtaatgtatgtgtaaagtgaaatagtatccatggtcacaaggcgagtatggtctggcggggtttaatataggtacatgtaatcagatgtgttcttcaggtatgacggtaaatcgtctatgtgctgacggagatgcaagtcattgaattcagatattttatctttggggtgtc
gi|8 : ccaacaaaatattcttgaagttggaaatttccaccgtgaaccttgtagaataatggaaagagtttgcagtcatgataaagtcatagaggctttcgcgactttcaaaccacttcatttcaatgttatatgtgaaatgtagccaactacgaggtttagatagtgaatgattccattatctttataaaacccaaaatggtgtaatttttgttctcatagttgtgccactgatttacagataatatgagtccaagaagctaagtgattcagttgaagaacattacctcaagtgtaCAATGAAATTTAC-ACGAGTATAGGTTGTGAAGAGAGGCGAGGAGTAAAGTCTGGT-GGGCTTAACATACGTTCATTCT-GCAAAGTCATTCGATTTTATTCAATTGCCATTTT
gi|8 : ATTTTCTC-TTGTTTT-TTCGTTTCAAGAGTCACTCCA-GTTAGGGTT-TGCGTCAA-AACTACGACTGTC----CT-TCTTCCCAT---T-----T--GTAACCCT--CTAGGTTGAAATGTTCCCAACGGTTCGGTGATCCGTT---TG---G-T---------CTTAATAAGTGA--C----GGTGATTGTTGACTCTTCT-CGGAG-TCACCT-GTTTCACCTACGTACTGCTTTTTGG---CATTTCTTACAACCGATAAGGTAGAT-CAG-TG-CAGTACGGCAGGGACATAGCT-CCCAAAATTTTGTAGCTCTGTTCCTGTCACCGGGCTGCTGAAAGTGTCAG----T--gaggccgaaatgactttaaatctgtgcatcagaattttctcttgttttttcgtttcaagagtcactccagttagggtttgcgtcaaaactacgactgtccttcttcccatttgtaaccctctaggttgaaatgttcccaacggttcggtgatccgtttggtcttaataagtgacggtgattgttgactcttctcggagtcacctgtttcacctacgtactgctttttggcatttcttacaaccgataaggtagatcagtgcagtacggcagggacatagctcccaaaattttgtagctctgttcctgtcaccgggctgctgaaagtgtcagt
gi|9 : caatgaaatttacacgagtataggttgtgaagagaggcgaggagtaaagtctggtgggcttaacatacgttcattctgcaaagtcattcgattttattcaattgccattttgaggccgaaatgactttaaatctgtgcatcagaTCTCCTTATTTT-TTC-TTTCCA-TATTGGTCCA-GTGCACGTTTTG-GTCAATAGCCACTACTGTC----ATGTTTTCCCAT---TCA---T--GT----CCTGCGAGATCGAAATGCTCT----------GCAAC--------TG---ATT---------CTT------TCAACCATTTGGTAGTTATTGATCCTCCTACGTAAGTCTCCT-GTTTCATCTACGTATTGT-TGATCA---CAGAGCTTACAGTTTATGTTGGAAATGCAATTATCCGTGCGACA-GGCTGTTTCC-CCCAGAATTCAGTAGTGTCA-ACTTGTGACAGGACTCTTAAAACTGTTAC----T--TCTAGC---GCTGTGTTTGCATATCGGGCATCT-ACC--A-TCAGA--ACATG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TGGTGATAGACTCGCAGACAAAAAAATGAACGGCAACCCCCAACCCCCCCTCCCCCCCTCCAGAACAACACCTAATATTAACCACGAGTCAGAAACTATGTCACATTCATTTGTTTGTGTCATGTCATTGGAGGCAATGACCTCCAACCTAATACTGATAGGCATCCAAAACTTCTTGGAGCCTTTTTCGTTGTCTTGTCGCAATATCGACCCAGT
Unaligned ( gi|19 ): GGTGAAGTCATTTAAGTTTATTCAAACCATCAGGGCAAAATGACTTCAGTCTACTTTGTCCAGAACTTCTCCTTGCCTATTCTCTCTGCATCAGAGAGGCATCTAGAGTCGTGATCTGTCATATCCTTCCATCTATGGCCATTAAGGCTGAAGTGATCCCCAACAGATTC
Unaligned ( gi|23 ): ATATTGCTCTAATGAACTGGTAATGGTTTAGCCCGTTGTCATCTTGGAAAAGTCATAGAGTTTGTTAATACCTTGATGTTCGAATGACTTCAGCCTATGCATTTAGAATTTCTCCTTTCGTTTTCTTTAAATATCTGACCA
Unaligned ( gi|26 ): GACTAGGACTGTCGATGAGATTCTCGGTGCTAGAGTTGTGTTTGCGTGATTCTAGACATCCTGATATCAGTATGTTAAAACTGCCTCCATTTAAGCATTAAATTGTTAAGTCTAGTCTTCATCA
Unaligned ( gi|32 ): AGCAAAGTAATTGAACTATTTTAAACCATCATGGTGAAATTACATCAGCCTGTGAATCTTCTCTTCTTCATCTCTGCAAAAGACTATCTAGACTCGTGAT
Unaligned ( gi|36 ): TCATTCTATTGAAATTTCTGGTATTTTTCCTGCCATAGGGGCGGAATGATTGCAATATATGCATCGATCAAGGAATGTTAT
Unaligned ( gi|37 ): ATGATGATGCTCAAACAAAGAATAAATGACAAAATCCCCCACAGAACAACACATAGTATTAACTAGGCGAAGCTAGACCAC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 11 1 1 1 1111 6666666666666666666666666 5555555555555555555555555555555555555555 11111 1111 11 222 11 6666666666666666 333333333 11 1111111111 111 111 11111111 222222 1 11 111 1 11111 555555555555 22 11 3333333333333333333 222 111111 444444444444 111 1111 1111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111 1111 1 1111 222 222 5555555555555555 1 222222222 11 111 222 1111 11 11 111 11 4444444444444 11 1 22222 1 11 1 3333 111 33333333 1 2 1111 1 2222 222 2222 1
lowQualScore : 5 1 5 1 1 5 1 5 88 6 3 0 0 9999 1 0 5 9 6 2 4 0000 0 5555555555555555555555555 2 2 0 4444444444444444444444444444444444444444 66666 2222 1 00 3 1 8 77 333 1 0 3 77 9 6 7 00 1 1 77 4 1 1111111111111111 4 3 22 111111111 1 11 1 1 1 0 0 1 0 1 2 33 8 99 66 0 5 1 5 1 1 66 999 1 1 1 1 2 8888888888 5 000 3 11 3 0 33 0 3 1 8 444 44444444 8 888888 1 1 1 0 1 6 0 1 1 1 33 0 6 99 5 55 7 000 3 77 3 6 33333 444444444444 77 11 1 5 44 77 6 0 7 7 5555555555555555555 222 7 2 5 1 1 999999 333333333333 3 1 44 111 4444 1 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2 1 3 6 3 5 77 5555555 0 8 5 1 4444 0 3 0 0 77 9999 2 111 111 1 6666666666666666 5 0 0 0 0 0 1 1 1 555 1 1 222222222 11 666 0 2 0 444 1 333 3 7777 33 8 1 33 1 7777 6 1 77 6 1 1 6 11 0 11 111 3 1 2 0 0 1 11 1 11 1 1111111111111 1 0 00 00 0 1 3 66666 0 00 0 6666 1 777 11111111 1 5 2 1 0 0 7777 7 0 0 3 2222 333 7 1 1 0 1 1 8888 3
lowQualScore : . . . . . . . . .. . . . . .... . . . . . . . .... . ......................... . . . ........................................ ..... .... . .. . . . .. ... . . . .. . . . .. . . .. . . ................ . . .. ......... . .. . . . . . . . . . .. . .. .. . . . . . . .. ... . . . . . .......... . ... . .. . . .. . . . . ... ........ . ...... . . . . . . . . . . .. . . .. . .. . ... . .. . . ..... ............ .. .. . . .. .. . . . . ................... ... . . . . . ...... ............ . . .. ... .... . . ............................................................................... . . . . . . . .. ....... . . . . .... . . . . .. .... . ... ... . ................ . . . . . . . . . ... . . ......... .. ... . . . ... . ... . .... .. . . .. . .... . . .. . . . . .. . .. ... . . . . . . .. . .. . ............. . . .. .. . . . ..... . .. . .... . ... ........ . . . . . . .... . . . . .... ... . . . . . . .... .
lowQualScore : 5 0 0 0 0 5 0 0 00 5 2 0 0 8888 0 0 6 0 7 8 2 6666 2 1111111111111111111111111 7 3 4 6666666666666666666666666666666666666666 11111 1111 0 00 2 0 0 77 333 0 7 5 00 3 7 5 88 0 0 77 9 0 7777777777777777 6 2 44 222222222 0 00 0 0 0 7 3 5 3 0 3 44 7 33 99 2 0 0 0 0 0 99 444 0 0 0 0 8 9999999999 0 000 0 77 0 4 44 3 8 0 8 000 22222222 0 666666 4 4 0 6 4 0 8 4 4 0 22 2 7 22 7 77 5 222 2 77 3 7 33333 444444444444 99 44 0 7 44 99 6 7 3 3 0000000000000000000 000 1 3 6 4 0 222222 222222222222 7 0 22 777 2222 6 3 2222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 0 5 7 7 6 88 2222222 8 0 0 4 6666 8 8 8 2 33 0000 5 555 000 0 5555555555555555 0 7 7 7 7 7 0 0 0 222 0 2 000000000 22 555 2 5 2 000 0 222 2 0000 55 0 4 88 0 1111 0 7 99 6 0 7 7 00 7 00 888 8 4 8 4 8 0 44 0 00 0 8888888888888 2 2 55 88 0 0 2 55555 0 88 0 8888 0 555 22222222 0 5 5 0 8 0 3333 3 7 7 3 7777 333 3 0 0 7 0 0 3333 3
consensus : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCGAGGNGTAAAGTCTGGTGGGGCTTAGCNCANGTTCATTCTAGCAAANTCATTCGATTTTATTCAATTGCCATTTTCTCCTTGTTTT-TTC-TTTCCAGNGTCGNTCCA-GTTAGGGTTATG-GTCAATAACCACNACCGTC----ATGTCTTCCCAT---T-----T--GT---C---C-T-CGAGATCGAAATGCTCC----------GCGAC--------TG---G-T---------CTTAATG-GTGGACC----GGTGGTTGTTGATTCTTCTACGGAGGTCACCT-GTTTCACCTACGTACTGC-TTTTGG---CANACCTTACAACCGATAAGGTAGACGCAGTTGTCCGTGCGACA-GGACGTNGCT-CCCAANATTTTGTAGCTNCG-NCCTGTGACAGGGCTGCTGAAANTGTCAG----T--GC---C---GCTGCGTTTGCACATNAGGCATCT-G-C--A-TCNGA--ACANGTNTTGAAACCNCCGTTGGGTAATGGGTTATCCAGCCTAGTTCTAACTACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATNG-GNGGNTCTTTG--AAGACCCTAGCCATTCNTTNGTTGNTGTGNAGAATGGGNAAATG-----NCT-TC-TCAGGATGNTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCG-CCT-TCTTCTCT-C-GNTTATATTGAAGNAGGGATTCTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGNTTGCACT-TGGG-G--GCTTTG-TAGCCTCTCTTGCACAGGTGNTTTTTC--GATGG-NTGCT-TTGTTC-TT-A---TAA--C-GNAA---CAGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCCTTAGGTACTCCTTTGAAGGTATGAGGT-GG-TGACAA-C-T-GATGGCATGGNATATATAAATGTGAGTCAGCGGGTTTNGTGTGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANCGTG---GAAGTG----GTATCCAAGAATACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----ATAAAGTTNTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAA-GG-CGATTGTCTGAGT-AAGTTGCGTTCAAATCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCACTNACTTGTAAGTAATGTTCGCCGTTGAACGCGAAGTTATTGAGTTTGAGGACATNA--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTGTCAGGGCCCTGCTATCCCAANCCTCTCTGCAGGCTTCAATGCCTTCCATCGTGGGGGATGTTCGTGTAAAGCGAAGTCGTATCCATGGTCGCGAGGNGAATATNGTCNGGCAGGTTNNAANAAAGGT--TTTTG--TTA-AGGTAACCAGTNGTGTCCTTCAGGTATGACGGTAG---CTTNACAACGTGCGGACG----GAGATGTAGGTCAATGAATT-CTGAGATTTTCTCCGTGGGGTGTCCGATGGCACTCACTATGGGACGGCCAGGCATGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GG--TCTACAGTCGAG--AGGCAGCAATGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTNTCGNTGATNGTGGCAGAAAACGTT--TTNGTGGGGTCGGAGTCCAG-T-------TNTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCCGCTACGTATG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CCG---TTNTTTT---AGC--CT---NAAGGNCAGCTCTCTCTTCTTTGCTNAGATTGTCC-GGAATA-TT-CTGTTTCGTCGAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTNGATGTAGGACTCGANGGCCGCACATTTTNCTANTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAG-AGTTT
Reference ( family-3283 ) : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCGAGGNGTAAAGTCTGGTGGGGCTTAGCNCANGTTCATTCTAGCAAANTCATTCGATTTTATTCAATTGCCATTTTCTCCTTGTTTT-TTC-TTTCCAGNGTCGNTCCA-GTTAGGGTTATG-GTCAATAACCACNACCGTC----ATGTCTTCCCAT---T-----T--GT---C---C-T-CGAGATCGAAATGCTCC----------GCGAC--------TG---G-T---------CTTAATG-GTGGACC----GGTGGTTGTTGATTCTTCTACGGAGGTCACCT-GTTTCACCTACGTACTGC-TTTTGG---CANACCTTACAACCGATAAGGTAGACGCAGTTGTCCGTGCGACA-GGACGTNGCT-CCCAANATTTTGTAGCTNCG-NCCTGTGACAGGGCTGCTGAAANTGTCAG----T--GC---C---GCTGCGTTTGCACATNAGGCATCT-G-C--A-TCNGA--ACANGTNTTGAAACCNCCGTTGGGTAATGGGTTATCCAGCCTAGTTCTAACTACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATNG-GNGGNTCTTTG--AAGACCCTAGCCATTCNTTNGTTGNTGTGNAGAATGGGNAAATG-----NCT-TC-TCAGGATGNTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCG-CCT-TCTTCTCT-C-GNTTATATTGAAGNAGGGATTCTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGNTTGCACT-TGGG-G--GCTTTG-TAGCCTCTCTTGCACAGGTGNTTTTTC--GATGG-NTGCT-TTGTTC-TT-A---TAA----GNAA---CAGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCCTTAGGTACTCCTTTGAAGGTATGAGGT-GG-TGACAA-C-T-GATGGCATGGNATATATAAATGTGAGTCAGCGGGTTTNGTGTGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANCGTG---GAAGTG----GTATCCAAGAATACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----ATAAAGTTNTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAA-GG-CGATTGTCTGAGT-AAGTTGCGTTCAAATCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCACTNACTTGTAAGTAATGTTCGCCGTTGAACGCGAAGTTATTGAGTTTGAGGACATNA--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTGTCAGGGCCCTGCTATCCCAANCCTCTCTGCAGGCTTCAATGCCTTCCATCGTGGGGGATGTTCGTGTAAAGCGAAGTCGTATCCATGGTCGCGAGGNGAATATNGTCNGGCAGGTTNNAANAAAGGT--TTTTG--TTA-AGGTAACCAGTNGTGTCCTTCAGGTATGACGGTAG---CTTNACAACGTGCGGACG----GAGATGTAGGTCAATGAATT-CTGAGATTTTCTCCGTGGGGTGTCCGATGGCACTCACTATGGGACGGCCAGGCATGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GG--TCTACAGTCGAG--AGGCAGCAATGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTNTCGNTGATNGTGGCAGAAAACGTT--TTNGTGGGGTCGGAGTCCAG-T-------TNTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCCGCTACGTATG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CCG---TTNTTTT---AGC--CT---NAAGGNCAGCTCTCTCTTCTTTGCTNAGATTGTCC-GGAATA-TT-CTGTTTCGTCGAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTNGATGTAGGACTCGANGGCCGCACATTTTNCTANTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAG-AGTTT
gi|1 : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCAAGGTGTAAAGTCTGGTGGGGCTTAGCTCAAGTTCATTCTAGCAAATTCATT-GATTTTATT--ATTGCCAATTTCTCTTTGTTTTATTC-TTTC-AGAGTCACTCCA-GTTAGGGTTGTG-GTCAATAACTACGACCGTC----ATGTCCTCTTA--------------------------CGGGTTCGG--TGATTC----------GT--T--------TG---G-T---------CTTTATA-ATATACC----GGTGTTTGTTGACTCTTCTTCGGAGGTCACCT-GTTTCACATACCTACTGC-TTTTGG---CATTTCTTACAACTGATAAGGTAGGTGCAGTTGTCAGTGCGGCA-GGACGAAGCT-CCCAAAATTTAGTAGCTCTG-TCCTGTCACCGGACTGCTGAAAGTGTCAG----TTGGC---CC--GCTGAATTTGCACATGAGGCATC--A-CTTA-TCAGA--ACACGTGATGAAACCCCAGTTGGGTAATGGGTTATACAGCCTAGTTCTAACTACAATGTCCTTTATATTTCAAGGT-TG--TCTGAAGGCCG-CCATTG-GAGGGTCTTTA--AAGATCCTAGCCATTCGTTTGTTGTTATGCAGAATGGGCAAATG-----GCT-TT-TAAAGATGGTATTGAGGTTCTTCAGGGCGTGATGAAATGTAGTAACTAAATGGA---CT-CTATTG-CCT-TCTTCTCTCC-GGTTATATAGAAGCAGAGAGTTTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGCTTGTACT-CGAACA--GCTTTA-TAGCCTCTTTTACATAGGTGGCTTTTC--AAGAGTCTGCT-TTGTTT-TT-C---TAATTCCGAAC---CAGA--G--GAACAGATACGACGAA-CTCGT-GTAGCTAA--AACCTTAGGTACTCCTTTGAAGGTATGAGATGGG-TGACAG-CTT-GAAGGCAT--CATGTATAAATGTGAGTCAGCGGGCTTTGTGTGGAGGTTG------AATTC---------A--ATTTTATCATTCAAGAGAGTG---GAAGTG----ATATCCAAGAATATGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGGTGAAATGAGT---TGG-------------------TAAAGTTTTCAAGCCTATCTCG-GCCCTCCTTCCATTTCATTTCAATGTCATCAATGAAACACAACCAACTATGGGGTTTAAAGGG-CGATTGTCTGAGT-AAGTTGTGTTCCAATCTTCCCATGAAAATGTTGGGATACGAATGAGCCATTTTCGTTCCCATAGCTGTGCCACTAACTTGTAAGTAATGTTCGCCGTTGAACACGAAGTTATTGAGTTTGAGGACATAA--TCAAGGAGCTTGACCAATTATTCTGTGGAAGGA---TGTGTCAGAACCCTGCTATCCCAAACCTC----------------CCTT-CATCGTGGGAGATGTTTGTGTGAAGCAAAGTCATATCCATGGTTGCGAGAAGGATATTATCAGGTAGGTTGGAAGAGAGGG--TTTTG--TTA-AGGTAATCAGTGGTGTCCTTCAAGGATGATGGTAG---TTTAACA---TGTAGGCG----GAGGTGTAGGTCAATAAATT-CTGAGATTTTCTCCTTGGGGTATCCAATTGCACTCACTATAGGGCGGCCAGGCATACCTTCTTT--GTGGATTTTAGGCGGTAAATAAAATTGTCCA-GG--TCTACAGTTGAG--AGGCATCAATGTTTCAAAGACAT--TATTACCAATTTTCTCGTCTTTGTACATTTGCTCAAGAGTGTCGTTGATTGTGGCAGAAAACGTT--TTGGTGGGGTCGGAGTCCAG-TTTAGCAGTTTAGTGTAAAACCGTTCATCCGGGACATGTCTGTGCGCTTCCGCTGTGTATA-TTATCTTGTCTAATACCACCAATGTTGACCCTCTGTCTGCTTTTTTTTT-TTATAACAATGTCATC-CCGT--TTGTTTT---AGCT-CT---TAAGGCTAAC-CTCTCTTATTTGCTTAACTTGTCCGGGAATATTT-CTGTTTTGTTGAG-TAG--T-TTTTCAATGTC---CTGCTCAACTAATTCGATGTAGGGCTCGATGGCTGCACATGTTCCTATTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAGTAGTTT
gi|10 : ACTGC-TTCTGATGACAAACTTTGCAACCGAGGAGATAAACAAAGTTATT-----------GAAGTCGC---CTAATATTCTGTAACTACG-GTCTGTGATAGGACTGCTGAAGGTCTCAGGGGGT--AG---A---GTTGTATTTGCA--TAAGATATCT-G----A-GATGATGATAGATCTTAAATCCTCCAATCGGTAATAGGTTGTCCAGTCTAGTCCTCACCAATATGTCCTTTATGTTCCT-GGTGCA--CCTAAGGGCAGTCCGTAG-GTGGACCTTTG------------TCATTCGTTGGTTCTTGTGTAGAATAG--AAATG-----A-------CAGGATGGT----AAG----------------------TGGTGACTAAG-GGA---CC--------CCT-GCTTCTCT-C----TACATTGTAAAATAGATCGTCTGTCTTGTTC-GGTTAACTCATCAACTG
gi|11 : CCTGTGATAGGACTGTTCAAACTTTCAG----T--GT---CTGAGCTACATTCGCACAATTGATGTCT-G-A--GGTCTGA--GCATATGTTGAAACCTCCATTAGGTAAAGAATTATCCAGTCTATCCCTAACATCCATGTCCTTTAGGTTTCTAGG--CG--TCTGGAGGACG-GCATAG-GGGACTCATTG--AAAACATCAGCCTTTCATTTATTGGGATGCAGAATGGGCAGATA-----CCG-TC-TCGAG-------------TCTTGAGGGCGGGATGGTATGTAATagg
gi|12 : AA---GAGA--GA-GAGCA--TGTGACAAAACTCTT-GTGCCTAC--ACCTTTAGGTACTCTTATAAAGGTATAAAGT-GG-------------ATAGCATAAGATACA-GAATA-GAATCCACAGACTTTGTATGGAGGCTGCATCAGAATTCTTGCATAATG--ATTTCATCATTtttgaggtaaatgacttttgaggatctttccttgtttt
gi|13 : aaaacatccttttaacagatagctttgcttttaaatactctactctgttttggaatgctgtgggagATGATGGTAG---CTTCATAGCATATGGACATGCAGAGATGTAGGTCAATCAATT-CTGAGATTTGCTCCGTGGGGTGCCCAATGGCACACACTATGGG-TGACCAGGCACACCCTCCTT--GTGGATTTTAGGCAGTAGATAGAATTGCCCA-GGTATATACAGTTGAG--AGGAAGCAATGTTTCAAAGACAT--TTTCACCAATTTCCTCGTCTTTGT-----------AGAGTTTCACTGATGGTGGCAGAAAACGCT--TTattgagattaacaaaattgggaacattttcaag
gi|14 : aaaACAGTTGAG--AGGCAGCAATGTTTCAAAGACA-------ACCAATTTTGTCATCTTTGTACATCTGCTTAAGAGTGTCGGTGATTGTGGCAGAAAACGTT--TTGGTAGGGTCGGAATCCAG-T-------T-TAGTGTAAAACCGTTCATCCGAGAGTTGTCTATGCGCTTCCTCTA--TATG-TTGTCTTGTCTAATACCACCACTGTTAACg
gi|15 : TAGTATGGAGGCTG------AATTTT--------A--ATTTCACCATTCCAGAATGTG---GAAGTG----GTATCCGAGAATACGTTCTTGGAGCTAGAAATTTC---------CA---------CTGTAAATTTTATG--GAA---TGATGAAATGAGT---TAG-TTAAGGA----A-----ATAAAGTTTTCAAGTTTATCTCG-GCCCTCCGTCCATTTCATCTCAATGGCATCAATGAAATGCAACTAACTATGGGGaatgtcatactggttttatcaaaatgtc
gi|17 : acaagtgtgaataGTG---GAAGTG----GTATCCAAGAATACGTTCATGGAGCTGGAAATTTC---------C--------------------------------------AATG----------------------------TAA---TCT---GTCTATTTTC-GCCCTCCGTCCATTTCACCTCAATG---------AAACGCAACCAATTATGGGGTTTAAA-GG-AAGTTGTCTGAGC-AAGTT-----------TTCCAATGAAAATGCGGGGATACGATGGAGTCATCTTCGTTCCCATAGCTATGCCACTTACTTGTAAGTAATGTTC
gi|18 : aTCATGTTTCT--GT-TGCCTCTGAAGGATG-TCATAGTGGGGGTCTTTG--AAAACATAAGACGTTCATTTGTCGGCCTACTGAATGGGTAGACA-----TTT-TC-TCAGAATGCATTTGAAATACTTGAGGGCGGGATGGTAAGCAGT
gi|2 : atcagtattgaATTGTATGAGG-ATGTTGCGTTCAAGTCTTCCCATGAAAATGTTGGCATACGATGGAGCCATCTTTGTTCCCATAGCTGTGCCACT----TGTAAGTAATGTTCTCCGTTGAACATGAAGTTGTTGAGTTTGATGATATGT--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTG---GGGCCTTGTTATTCCAACCCTCTCTGCAGGCTTCAATGCCTTCCATCATAGGGGATGTTCTTATAAAGTGAAGTCACATCCCTGGTCACAAGAAGAATATTGTCAGGTAGGTTGGAAGAAGGGT--TTTTG--TTA-TGGTAGCTAGTA-----------GTATGATGGTAG---CTTTACAACATGTGGTCG----GAGATGT---CCAATGAttgtcattttgaggttttctctgtattgtttga
gi|2 : GAGATGTCCAATGACACC----ATGGGACGGCCAGGCATACACTCT------G---TTTAGGGGGTAGATAAAATTGTCCA-GA--TCTACAGTTGAG--AGAAAGCAGTGATACAAAGACAT--TGTCACCAAGTTCCTTGTCTTTGTACATCTGCTTAAGAGTTTTTGTGATGGTGGCAAAAAACGTT--TTCGTAGGGTTGGAGTCCAG-T-------TA-AGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGTGCTTCTACCATGTATG-TTTCCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTTGTTA--ACAATGTCATC-CTG---GTCTTTT---AGC--TTTTGTAAGACTGAC-CT---TTCTTTCCTTAGATTGTCCTGGAACC-TTGCTGTTTTGTCAAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTGGATGTAGGACTCGAGGGCTGCACATTTTACTGATGGAGGTTCCAATTTGCTCTTAGTTC----GGTAG-AGTTTcaccatgggacggccaggcatacactctgtttagggggtagataaaattgtccagatctacagttgagagaaagcagtgatacaaagacattgtcaccaagttccttgtctttgtacatctgcttaagagtttttgtgatggtggcaaaaaacgttttcgtagggttggagtccagttaagtgtaaaaccgttcatccgagagttgtctgtgtgcttctaccatgtatgtttccttgtctaataccaccactgttgaccctttgtctgcctttttgttaacaatgtcatcctggtcttttagcttttgtaagactgacctttctttccttagattgtcctggaaccttgctgttttgtcaagtagtttttcgatgtcctgctcaactgcttggatgtaggactcgagggctgcacattttactgatggaggttccaatttgctcttagttcggtagagttt
gi|20 : attgtatgaggatgttgcgttcaagtcttcccatgaaaatgttggcatacgatggagccatctttgttcccatagctgtgccacttgtaagtaatgttctccgttgaacatgaagttgttgagtttgatgatatgttcaaggagcttgaccaacgattctgtggaaggaatttgtggggccttgttattccaaccctctctgcaggcttcaatgccttccatcataggggatgttcttataaagtgaagtcacatccctggtcacaagaagaatattgtcaggtaggttggaagaagggtttttgttatggtagctagtagtatgatggtagctttacaacatgtggtcg-G--GCTTGG-TTGCCTCTCTTGCAC--GTTTTTTTTT--GATGG-ATGCTCTTGTTC-TT-A---TA-----GAAAGTGCAGA--GTAGAGCAGATATGGCGTA-CTTG--GTGGCTAA--ACCTTTAGGTA-----TTG--GGTA-GA-----A-TGGCAA-C-TAGATGGCATGGAAT-TATAAA
gi|21 : a-G--GCTTGG-TTGCCTCTCTTGCAC--GTTTTTTTTT--GATGG-ATGCTCTTGTTC-TT-A---TA-----GAAAGTGCAGA--GTAGAGCAGATATGGCGTA-CTTG--GTGGCTAA--ACCTTTAGGTA-----TTG--GGTA-GA-----A-TGGCAA-C-TAGATGGCATGGAAT-TATAAAatacatcacgaggcagccgagt
gi|22 : a-T---------TTTAATG-GTAGACC----GGTGGTTATAGATCTTTCAACATAGATACCCTAGTTTCACCTACGTAGCG----TTGGTCACAAACTTTGCAACTTTTAAGATAGATACAGTCGTCCGTGCGACA-GGATGTGTCC-TCAAGGA--TTATAATATAA-GCCAGTGGCAGGGCTatacatcacgaggcagccgagt
gi|24 : tcTTTTTCCT-GTCTT-TTC-CTCTCTGCATCGGTCCATGTT-GGGTTATA-ATCGATAATCACCACCTGC----ATATCTct
gi|25 : atgcgcacgaaatcattcagtttgttcattccatctgggcggaatgatttcaagcgatgcatctatgaACATATAGATGGCAGTTAGCAGTTTTGGCGTGGAGCCTG------AACTC---------G--ATATTTCCGTTAACGACCTTA---GACGTG----CTGTCTAGAAAGACGATAGTGGATGTGGAAAT
gi|27 : aggaggatggcgggattagatatAGGCGAATTTGGTGTTGCAGGT-CCAATAAATGTAATTTTAATTTA-GGGTAACCATTCGGGTCCTTAAGGTGTGACGGTAAATCCTTTACA---TGCTGACG----GGG
gi|28 : tgaaagttcaataattatcCTTTA-TAGCCTCTCTTGCACACATGGTTTTTC---ATGG-TAATT-TTGTTC-TTGA---TAAAGT-GCAA---GATT--G--AAACAGATGCGATGGA-TTCGA-AGGGCTAAGTACTCTCAGGTATTCCTTTg
gi|29 : TGGGATGTCCTGTAGCAATGACTATTGGACTTCCATGCATGTTTTTTTTTTATGAATTTTAGGAATTAAGT-AAATTTTCCT-GA--TCTACAGTCG
gi|3 : TGAAACCCCCGATAGGTAGTGGGTTATCCAGCCTAGTTCTGACTACAATGTTCTTTAAATTTCTAGGT-TG--TCTGAAGGCCT-CCATTG-CAGGGTCTTTA--AAGACCCTAGCTATTCTTTCGTTGTTATATAGAATAGGTAAATG-----GCT-TT-TAAGGATGGTATTGAAGTTCTTCAGTGCGGGGTAAAATGTAGTCACTAAGGGGA---CT-CTATTG-CCT-TCTTCTTT-CTGTTTATATAGAAGCAGGGAGTTTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGGTTGTAC--TGGA-GCAGCTCTA-AAGCCTCTTTTACATAGGTGACTTTTCAGGA-GT-TTGCT-TTGTTT-TG-AGTTTAATTTCGTGA---CAGA--G--GAACAGATACGACAAA-CTTGT-GTTGCTAA--ACCCTTAGGTACTCCTTTGAAGATATGAGGTGGG-TAACAGCC-T-GAAGGCAT--CACATACCAGTGTGAGTCAGTGGGTTTTGTGCGGTGGCTG------AATTC---------A--ATTTCACCGTTCATGAGAGTGATCGAAGTGGTAAGTATCCAAGAATACGTTCTTGGAGCTTGAAATTTC---------CT---------T-----------TG--TAAATTTAATGAAATGAGGAAATGG-T-----A----AAGGAGATAAAATTTTCAAGTCCATCTCG-GCCCTCCTTTCTTTTCAACTCAATGTCATCTTTGAAACCCAACCAACTATGAAGTTTAAA-GGCCGATTGTCTGAGTAAAGTTGCATTCAACTGTTCCCATGAAAATGTAGGCATACTATGGAGCCAttggaacaaagcacttc
gi|30 : TCAATAACCACCACCGTC----ATGTCTTCCCATGCATATGAGT--GTC--C---C-T-CGAGATGAAAATGCTCG----------GCGAC--------GG---G-T---------TCT------TGGACC---------CTTTTGGTTCTT
gi|31 : ACGTTTTTCAGATTTCCTGGG-CG--TCTGAAAGCCA-CCATGG-ATGGTTCTTTG--AAGACCATGGCCATTCTAGAGGTAATGTGAAGAGTGGGAAAATG------CT-TC-Tatggtagaccgatga
gi|33 : ttcagGTTAATGAATTTCTGGGATTTTTTCCGTGGGGTGTCCG-------TCA------GACACCCTGACATGGCTGTTTT--GTGTATTTCGGGTAGCAAATAAAATTGTTCA-tc
gi|34 : TG-ATCAATAACAA--AC--TCATGAATGTCATCCCAT---T-----CAGGA---C---CAT-TGAGGCTGAGACGTTCC----------ATAAC--------TGGTTG-T---------TTTGACG-GTGGATC----GGcttc
gi|35 : agaatagTTGTCTGC-----TTTT-TTATGACTATGTCGTCACCGGTTTTTTTTT---AGCAATT---GGAGGACAGCTCTCTCTTCTTTGCTGAGATTGTCT-G
gi|38 : ACAATGGGGCGGCCAGGAATATTCTGTTT--GTGTATTTTAGGAAGCATGTAAAATa
gi|39 : ctactgcagatTCAATAATCACTACTGTC----ATGTCTTTCCAT---T-----T--GT---TGAAT-G-CAAAATTAAAATGCTCG----------GTGAC--------
gi|4 : aAGAATTATG-GTCAATTACCACTACTGTC----ATATCCTCCCAT---C-----T--GTGA-C---CAT-TAAGATTGAGGTGTTCC----------CCGACGGGCTCTTTG---G-TTCTTTTTGTCCTAATG-GTGGATC----GGTGGTTGTTTATTCTTTGGCGGATGTCACCC-GTTTCTCCAACATATTGC-TTTGAG---CAAACCTTACAATTG---AGATACACACAGTTGTCTGTGTGACA-GGACAT-GTTACCCAATATTTTGTAGATGCG-ACCAGTAAC-GGGCTAGTAAATTTGTCAG----T-----------GCTGTGCTTACACAAAAGGCATCTGG-C--A-TCGGA--ACAAGTTTTAAAACCACCATTGGGTAATGGGTTGTCTAATTTCGCTCTCACTACCATGTCCTT----TTCCTAGGC-CG--TCTAAATGCAG-CCATTG-GTGGATCCTTGAAAAGATCC--GTCATTCTTTTATTATTGTGAAGAATATGTACATGTAGATTCTCTC-TCAGGATGCTGTTAAAGTTCTTAAGGACGGGGTGAAATGTTGTGAC-ATGTGGAACCCTACTATTGTCTT-TCTTCTC-----ATTGTATTGAAAAAGGGTTTCCCTGTT-CTTTGTGGTTATCTCATCAATTGCGGATTGCACTGTGTG-G--GCTTTG-TAGCCTCGATTACACAGATG
gi|40 : gCAGGTTTTAAAGCCATCATTGGGTAAAGGATTTTCCTACTTGGTTCGAACCACCATGTCTT
gi|5 : G--TCTGAAGGCTG-TCATGT-GTCGTTCTTTG--AAGATCATGGCCATTCTAGGGGTAATGTGAAGAGGGGGGAAAT------ACT-TCTTCAGAATTTTGTTCAAATCTTTTAAGACAGGGTGGTACGTAGTGACCACTGGGA---CT-ATGTCA-CCTATCGATTCG-T-GTTTGTATTGTAGTAGGGATTCTCTGTCGTGTTCT-GACATCTCATCAACAGCTGCTTGCACT-TTGG-G--GGTTTGATAACCTCTCTTGCACAGATG--TTTTA--GATGG-GTGCT-CTGTTCTTT-A---TGA----AGTG---CAGAGTG--GAGCAGGTACGACGGA--TTGTGGTGGCTAC--ACCTTTAGGTACTACTTTGAATGTATCAGTA-GGATGACAA-C-T--ATG-------AGATACAAATTTGAGTCAGTCGGTTTGGTATGGAGACTG------ATTTC---------AACATTT--CCGTTAAAAATCTTG---TTAACA----G-A---AAAAAGACGTTACTGGATGTGGAAATATCAACAGTTAACA---------TGA---------TC--AAA---TTATGGAATGAGT---TGGCT-----AGTTTA-----ATAAAGATGTCAAGATT-TCTCATACTTTTTACCCACTTCGTCGCAAT
gi|6 : AATT-CAGATAATCTCTCCGTGGGATGTCTGATGGCACTGACAATGAGTCGACCAGGCACGCCTTCTTT--GTGAATTTTAGGGAGAAAATAAAACTG-CCATGG--TCTGCAGTC-AGCCGGACAG-AGTGCTTCGTAAACGTAGTCTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTCCTCTGTGGGGTCTGAATTCAGCT-------TCT--TGTAATACTGCTCATCAGATAGCTGCCTGTTGGCTTCAGCTACATACGATTCTCT-GTCTAGAACAACTACTGTAGACCCTTTGTCTG----CTTTCT-TTACGACAATATCGTC-ACG----GGTTTTGAGAGA--CT---GAAGGGCAGCTCTCTCTTCCTTGTTGAAGTTATCC-GAAATA-TA-TGG--TCGTTGAGACAGGATATCTTCGATATTAGACTGC---ACTGCGTAGATATAAGATTCCAAGGCCCCACATTTTTCAAGTGGAGGTTCCCAGGGATTCTTAGGCTTACAAGTAG-AGTTTcaacttacagacc
gi|7 : CCAACAAAATATTCTTGAAGTTGGAAATTTC---------CACCGTGAACCT-----------TGTAGAA---TAATGGAAAGAGT---TTG-C-----A----GTCATGATAAAGTCATAGAGGCTTTCGCG-ACTTTCAAACCACTTCATTTCAATGTTATATGTGAAATGTAGCCAACTACGAGGTTTA-------GATAG--TGAAT-GA-TTCCATT---ATCTT--TATAAAA-------CCCAAAATGGTGTAATTTTTGTTCTCATAGTTGTGCCACTGATTTACAGATAATATGAGTCCAAGAA-GCTAAGTGATTCAGTTGAAGAACATTACCTCAAG
gi|7 : ATGTATGTGTAAAGTGAAATAGTATCCATGGTCACAAGGCGAGTATGGTCTGGCGGGGTTTAATATAGGT-----------ACATGTAATCAGATGTGTTCTTCAGGTATGACGGTAA---ATCGTCTATGTGCTGACG----GAGATGCAAGTCATTGAATT-CAGATATTTTATCTTTGGGGTGTCtgtaatgtatgtgtaaagtgaaatagtatccatggtcacaaggcgagtatggtctggcggggtttaatataggtacatgtaatcagatgtgttcttcaggtatgacggtaaatcgtctatgtgctgacggagatgcaagtcattgaattcagatattttatctttggggtgtc
gi|8 : ccaacaaaatattcttgaagttggaaatttccaccgtgaaccttgtagaataatggaaagagtttgcagtcatgataaagtcatagaggctttcgcgactttcaaaccacttcatttcaatgttatatgtgaaatgtagccaactacgaggtttagatagtgaatgattccattatctttataaaacccaaaatggtgtaatttttgttctcatagttgtgccactgatttacagataatatgagtccaagaagctaagtgattcagttgaagaacattacctcaagtgtaCAATGAAATTTAC-ACGAGTATAGGTTGTGAAGAGAGGCGAGGAGTAAAGTCTGGT-GGGCTTAACATACGTTCATTCT-GCAAAGTCATTCGATTTTATTCAATTGCCATTTT
gi|8 : ATTTTCTC-TTGTTTT-TTCGTTTCAAGAGTCACTCCA-GTTAGGGTT-TGCGTCAA-AACTACGACTGTC----CT-TCTTCCCAT---T-----T--GTAACC---C-T-CTAGGTTGAAATGTTCCCAACGGTTCGGTGATCCGTT---TG---G-T---------CTTAATAAGTGA--C----GGTGATTGTTGACTCTTCT-CGGAG-TCACCT-GTTTCACCTACGTACTGCTTTTTGG---CATTTCTTACAACCGATAAGGTAGAT-CAG-TG-CAGTACGGCAGGGACATAGCT-CCCAAAATTTTGTAGCTCTGTTCCTGTCACCGGGCTGCTGAAAGTGTCAG----T--gaggccgaaatgactttaaatctgtgcatcagaattttctcttgttttttcgtttcaagagtcactccagttagggtttgcgtcaaaactacgactgtccttcttcccatttgtaaccctctaggttgaaatgttcccaacggttcggtgatccgtttggtcttaataagtgacggtgattgttgactcttctcggagtcacctgtttcacctacgtactgctttttggcatttcttacaaccgataaggtagatcagtgcagtacggcagggacatagctcccaaaattttgtagctctgttcctgtcaccgggctgctgaaagtgtcagt
gi|9 : caatgaaatttacacgagtataggttgtgaagagaggcgaggagtaaagtctggtgggcttaacatacgttcattctgcaaagtcattcgattttattcaattgccattttgaggccgaaatgactttaaatctgtgcatcagaTCTCCTTATTTT-TTC-TTTCCA-TATTGGTCCA-GTGCACGTTTTG-GTCAATAGCCACTACTGTC----ATGTTTTCCCAT---TCA---T--GT---C---C-TGCGAGATCGAAATGCTCT----------GCAAC--------TG---ATT---------CTT------TCAACCATTTGGTAGTTATTGATCCTCCTACGTAAGTCTCCT-GTTTCATCTACGTATTGT-TGATCA---CAGAGCTTACAGTTTATGTTGGAAATGCAATTATCCGTGCGACA-GGCTGTTTCC-CCCAGAATTCAGTAGTGTCA-ACTTGTGACAGGACTCTTAAAACTGTTAC----T--TCTAGC---GCTGTGTTTGCATATCGGGCATCT-ACC--A-TCAGA--ACATG
blockSeqs : . A . A C . G C CA C T . G CTGC G T A A C C C ATGA GCATATGAGTGTCCCT G A CCGACGGGCTCTTTGGTTCTTTTTGT AATAA ATTT G AA A C A CT TGA A A CA C G C TA T A TT A G GGGGTAGA T C TA TGAGG T TG G C T C T T TG A TG CC T A T T A AA TCA G G T T C GTAGATTCTC T CAT G TA G GT T A G ACC ACTATTGT A TCTGT T T A G T T A G TG . CA A AC T AGG T A C T AGTT ATTTCGTGA GT TA A A TG GT C A T GGTGGGTAACAGCCTG AAG A T G A T CATCAG TTGCATAATG C A AT ATC GTAA T CACTGTAAATTTTATGGAATGATGAAATGAGTTAGTTAAGGAA T C T A T G G AA AAGGCC A G G CAAG G T CA TACC G ATT . C TCTGCAGGCTTCAATG C A T A TGG G A AATTTTAAT CA CGG A ATC C GCA G TGCA AG T T AA G CACT A A TT G C C T TA CC TAG T C A T AC G CC G CTTCT T TG A G T CC G TG A GTTT C GAG TTTTGT C T C T T TTG T A GATA AGA T G G A A TACA .
blockSeqs : C T . . AAGA C . A A . C C . TCAGGACCAT T G CAACGGTTCGGTGATCCGTTTGGT AATG . G GG G A . C TCA A T TA T . G C G T G A C TGTCTGA C C AT TGGCA T . T G T A C T GG A T . . A . G C . TAA A T G C T ACCG . GTA G TT G GT T A T . CTATTG . GTGT A A C T G A A A T . . . AG T G T A C . GA AAGTGCAA . TA T . T . T A T GTAGGATGACAACT GGA A T T A A . AAC C C CC . . T AACAGTTAACATGATCAAATTATGGAATGAGTTGGCTAGTTTA C C T A . G T TT AAGGA . G A CAAC T G G GT C G T TTT T A TTTTG T TGT C . T ACA G . AA . T AA G GACT A G . A G T . . . T G C A G GG T . C TTTA T CA . T T C . CG . G T . AATTG A T C G . TA . . T . . A A T G . .
blockSeqs : . . . . CAT G . C T . T T . TTGTTGAATG T A ATAACTGGTTGT GACG . A TA G A . C . A A CA A . A T T G G A T TTCTAGC T T AA TACCA G . A T C G A C TG T T . . A . G G . CTA A T G C T ATTT . CTG A TT C AA C T G . ATGTCA . TC T A A C . T T C . . . . AG G G T T . . A GAAAGTG . A T . A . C A T ATGGCAACTAG GGA A T T G G . TA T T GA . . G CACCGTGAACCTTGTAGAATAATGGAAAGAGTTTGCAGTCATG T C T A . T T TG . . C A A A . C G T CC T T . G A . . T ATG T . . . A TG A GACA A T . T A T . . . T C T N T TG G . T TTAA C . . C . C . . . . G . CTG G . . G .
blockSeqs : . . . T T . CTGTGACCAT T G GCAACTGATT AATG . G T . T . T . T A TG C . T C A C A C G T T . TC TGA A . G T A C C T AA A G . . T . A G . ATG T C T T A GGCT . TTG C TC A AA . C . . . . A T T T C . A T . . . AG A G T T . . A GAAAGTG . . G . T . C . . ATGGCAACTAG C A C . C T . G C A TC . . T CTTTGTAAATTTAATGAAATGAGGAAATGGTAAAGGAG G A A T . A . . . . . . . . G . T . . A GA G CA G C . T T T . . . . . . . N NN N .
blockSeqs : . G T . TTGTAACCCT T A GCGACGGGT . . . . . G . T . . . . A T A A C T A A C C GA . C . . G . T T . ATG T A A A T GCT . GT . T T GT . . . . . . . G . . A AAGTG . . A . . . . . . AGTGG . . C G . A . . . G CAATG A . G . . A G . . T G . A A . .
blockSeqs : T T . TCATGTCCTG C A . . . . . . . . . T . T A . C T T T A G ACT . . . . . . . . . . G . . . . . . A . A . . G
blockSeqs : . . . . . G . T T . . T G A A . GA .
blockSeqCons : TCGTGACCNT*************** GCGACTGGTTCTGT************************** N* GAAAGTG***** ATGGCAACTNG******** GGA ACG
originalCons : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCGAGGNGTAAAGTCTGGTGGGGCTTAGCNCANGTTCATTCTAGCAAANTCATTCGATTTTATTCAATTGCCATTTTCTCCTTGTTTT-TTC-TTTCCAGNGTCGNTCCA-GTTAGGGTTATG-GTCAATAACCACNACCGTC----ATGTCTTCCCAT---T-----T--GT---C---C-T-CGAGATCGAAATGCTCC----------GCGAC--------TG---G-T---------CTTAATG-GTGGACC----GGTGGTTGTTGATTCTTCTACGGAGGTCACCT-GTTTCACCTACGTACTGC-TTTTGG---CANACCTTACAACCGATAAGGTAGACGCAGTTGTCCGTGCGACA-GGACGTNGCT-CCCAANATTTTGTAGCTNCG-NCCTGTGACAGGGCTGCTGAAANTGTCAG----T--GC---C---GCTGCGTTTGCACATNAGGCATCT-G-C--A-TCNGA--ACANGTNTTGAAACCNCCGTTGGGTAATGGGTTATCCAGCCTAGTTCTAACTACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATNG-GNGGNTCTTTG--AAGACCCTAGCCATTCNTTNGTTGNTGTGNAGAATGGGNAAATG-----NCT-TC-TCAGGATGNTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCG-CCT-TCTTCTCT-C-GNTTATATTGAAGNAGGGATTCTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGNTTGCACT-TGGG-G--GCTTTG-TAGCCTCTCTTGCACAGGTGNTTTTTC--GATGG-NTGCT-TTGTTC-TT-A---TAA--C-GNAA---CAGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCCTTAGGTACTCCTTTGAAGGTATGAGGT-GG-TGACAA-C-T-GATGGCATGGNATATATAAATGTGAGTCAGCGGGTTTNGTGTGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANCGTG---GAAGTG----GTATCCAAGAATACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----ATAAAGTTNTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAA-GG-CGATTGTCTGAGT-AAGTTGCGTTCAAATCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCACTNACTTGTAAGTAATGTTCGCCGTTGAACGCGAAGTTATTGAGTTTGAGGACATNA--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTGTCAGGGCCCTGCTATCCCAANCCTCTCTGCAGGCTTCAATGCCTTCCATCGTGGGGGATGTTCGTGTAAAGCGAAGTCGTATCCATGGTCGCGAGGNGAATATNGTCNGGCAGGTTNNAANAAAGGT--TTTTG--TTA-AGGTAACCAGTNGTGTCCTTCAGGTATGACGGTAG---CTTNACAACGTGCGGACG----GAGATGTAGGTCAATGAATT-CTGAGATTTTCTCCGTGGGGTGTCCGATGGCACTCACTATGGGACGGCCAGGCATGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GG--TCTACAGTCGAG--AGGCAGCAATGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTNTCGNTGATNGTGGCAGAAAACGTT--TTNGTGGGGTCGGAGTCCAG-T-------TNTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCCGCTACGTATG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CCG---TTNTTTT---AGC--CT---NAAGGNCAGCTCTCTCTTCTTTGCTNAGATTGTCC-GGAATA-TT-CTGTTTCGTCGAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTNGATGTAGGACTCGANGGCCGCACATTTTNCTANTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAG-AGTTT
finalCons : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCGAGGNGTAAAGTCTGGTGGGGCTTAGCNCANGTTCATTCTAGCAAANTCATTCGATTTTATTCAATTGCCATTTTCTCCTTGTTTT-TTC-TTTCCAGNGTCGNTCCA-GTTAGGGTTATG-GTCAATAACCACNACCGTC----ATGTCTTCCCATTCGTGACCNT---------------CGAGATCGAAATGCTCCGCGACTGGTTCTGT--------------------------CTTAATG-GTGGACC----GGTGGTTGTTGATTCTTCTACGGAGGTCACCT-GTTTCACCTACGTACTGC-TTTTGG---CANACCTTACAACCGATAAGGTAGACGCAGTTGTCCGTGCGACA-GGACGTNGCT-CCCAANATTTTGTAGCTNCG-NCCTGTGACAGGGCTGCTGAAANTGTCAG----T--GC---C---GCTGCGTTTGCACATNAGGCATCT-G-C--A-TCNGA--ACANGTNTTGAAACCNCCGTTGGGTAATGGGTTATCCAGCCTAGTTCTAACTACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATNG-GNGGNTCTTTG--AAGACCCTAGCCATTCNTTNGTTGNTGTGNAGAATGGGNAAATG-----NCT-TC-TCAGGATGNTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCG-CCT-TCTTCTCT-C-GNTTATATTGAAGNAGGGATTCTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGNTTGCACT-TGGG-G--GCTTTG-TAGCCTCTCTTGCACAGGTGNTTTTTC--GATGGN-TGCT-TTGTTC-TT-A---TAGAAAGTG-----CAGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCCTTAGGTACTCCTTTGAAGGTATGAATGGCAACTNG--------ATGGCATGGAATATATAAATGTGAGTCAGCGGGTTTNGTGTGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANCGTG---GAAGTG----GTATCCAAGAATACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----ATAAAGTTNTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAA-GG-CGATTGTCTGAGT-AAGTTGCGTTCAAATCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCACTNACTTGTAAGTAATGTTCGCCGTTGAACGCGAAGTTATTGAGTTTGAGGACATNA--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTGTCAGGGCCCTGCTATCCCAANCCTCTCTGCAGGCTTCAATGCCTTCCATCGTGGGGGATGTTCGTGTAAAGCGAAGTCGTATCCATGGTCGCGAGGNGAATATNGTCNGGCAGGTTNNAANAAAGGT--TTTTG--TTA-AGGTAACCAGTNGTGTCCTTCAGGTATGACGGTAG---CTTNACAACGTGCGGACG----GAGATGTAGGTCAATGAATT-CTGAGATTTTCTCCGTGGGGTGTCCGATGGCACTCACTATGGGACGGCCAGGCATGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GG--TCTACAGTCGAG--AGGCAGCAATGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTNTCGNTGATNGTGGCAGAAAACGTT--TTNGTGGGGTCGGAGTCCAG-T-------TNTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCCGCTACGTATG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CCG---TTNTTTT---AGC--CT---NAAGGNCAGCTCTCTCTTCTTTGCTNAGATTGTCC-GGAATA-TT-CTGTTTCGTCGAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTNGATGTAGGACTCGANGGCCGCACATTTTNCTANTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAG-AGTTT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TGGTGATAGACTCGCAGACAAAAAAATGAACGGCAACCCCCAACCCCCCCTCCCCCCCTCCAGAACAACACCTAATATTAACCACGAGTCAGAAACTATGTCACATTCATTTGTTTGTGTCATGTCATTGGAGGCAATGACCTCCAACCTAATACTGATAGGCATCCAAAACTTCTTGGAGCCTTTTTCGTTGTCTTGTCGCAATATCGACCCAGT
Unaligned ( gi|19 ): GGTGAAGTCATTTAAGTTTATTCAAACCATCAGGGCAAAATGACTTCAGTCTACTTTGTCCAGAACTTCTCCTTGCCTATTCTCTCTGCATCAGAGAGGCATCTAGAGTCGTGATCTGTCATATCCTTCCATCTATGGCCATTAAGGCTGAAGTGATCCCCAACAGATTC
Unaligned ( gi|23 ): ATATTGCTCTAATGAACTGGTAATGGTTTAGCCCGTTGTCATCTTGGAAAAGTCATAGAGTTTGTTAATACCTTGATGTTCGAATGACTTCAGCCTATGCATTTAGAATTTCTCCTTTCGTTTTCTTTAAATATCTGACCA
Unaligned ( gi|26 ): GACTAGGACTGTCGATGAGATTCTCGGTGCTAGAGTTGTGTTTGCGTGATTCTAGACATCCTGATATCAGTATGTTAAAACTGCCTCCATTTAAGCATTAAATTGTTAAGTCTAGTCTTCATCA
Unaligned ( gi|32 ): AGCAAAGTAATTGAACTATTTTAAACCATCATGGTGAAATTACATCAGCCTGTGAATCTTCTCTTCTTCATCTCTGCAAAAGACTATCTAGACTCGTGAT
Unaligned ( gi|36 ): TCATTCTATTGAAATTTCTGGTATTTTTCCTGCCATAGGGGCGGAATGATTGCAATATATGCATCGATCAAGGAATGTTAT
Unaligned ( gi|37 ): ATGATGATGCTCAAACAAAGAATAAATGACAAAATCCCCCACAGAACAACACATAGTATTAACTAGGCGAAGCTAGACCAC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 11 1 1 1 1111 22222222222222222 4444444444444444444444444444444444444444444 11 222 11 6666666666666666 333333333 11 1111111111 111 111 11111111 222222 1 222222222 111 1 33333333333333333333 22222 11 222222 22222222 333 111111 444444444444 111 1111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111 1111 1 1111 222 222 5555555555555555 1 222222222 11 111 222 1111 11 11 111 11 4444444444444 11 1 22222 1 11 1 3333 111 33333333 1 2 1111 1 2222 222 2222 1
lowQualScore : 5 1 5 1 1 5 1 5 88 6 3 0 0 9999 1 0 5 9 6 2 4 0000 0 00000000000000000 2 0 9999999999999999999999999999999999999999999 2 0 5 5555 00 3 1 8 77 333 1 0 3 77 9 6 7 00 1 1 77 4 1 1111111111111111 4 3 22 111111111 1 11 1 1 1 0 0 1 0 1 2 33 8 99 66 0 5 1 5 1 1 777 999 1 1 1 1 2 8888888888 5 000 3 11 3 0 33 0 3 1 8 444 44444444 8 888888 1 1 1 0 1 6 0 1 1 1 000000000 5 55 7 000 3 77 3 44444444444444444444 6 5 77777 1 5 44 77 6 0 7 111111 5 5 55555555 6 0 000 7 2 5 1 1 999999 333333333333 3 1 44 111 4444 1 0 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 2 1 3 6 3 5 77 5555555 0 8 5 1 4444 0 3 0 0 77 9999 2 111 111 1 6666666666666666 5 0 0 0 0 0 1 1 1 555 1 1 222222222 11 666 0 2 0 444 1 333 3 7777 33 8 1 33 1 7777 6 1 77 6 1 1 6 11 0 11 111 3 1 2 0 0 1 11 1 11 1 1111111111111 1 0 00 00 0 1 3 66666 0 00 0 6666 1 777 11111111 1 5 2 1 0 0 7777 7 0 0 3 2222 333 7 1 1 0 1 1 8888 3
lowQualScore : . . . . . . . . .. . . . . .... . . . . . . . .... . ................. . . ........................................... . . . .... .. . . . .. ... . . . .. . . . .. . . .. . . ................ . . .. ......... . .. . . . . . . . . . .. . .. .. . . . . . . ... ... . . . . . .......... . ... . .. . . .. . . . . ... ........ . ...... . . . . . . . . . . ......... . .. . ... . .. . .................... . . ..... . . .. .. . . . ...... . . ........ . . ... . . . . . ...... ............ . . .. ... .... . . ..................................................................................... . . . . . . . .. ....... . . . . .... . . . . .. .... . ... ... . ................ . . . . . . . . . ... . . ......... .. ... . . . ... . ... . .... .. . . .. . .... . . .. . . . . .. . .. ... . . . . . . .. . .. . ............. . . .. .. . . . ..... . .. . .... . ... ........ . . . . . . .... . . . . .... ... . . . . . . .... .
lowQualScore : 5 0 0 0 0 5 0 0 00 5 2 0 0 8888 0 0 6 0 7 8 2 6666 2 77777777777777777 7 4 4444444444444444444444444444444444444444444 3 6 7 3333 00 2 0 0 77 333 0 7 5 00 3 7 5 88 0 0 77 9 0 7777777777777777 6 2 44 222222222 0 00 0 0 0 7 3 5 3 0 3 44 7 33 99 2 0 0 0 0 0 111 444 0 0 0 0 8 9999999999 0 000 0 77 0 4 44 3 8 0 8 000 22222222 0 666666 4 4 0 6 4 0 8 4 4 0 000000000 7 77 5 222 2 77 3 88888888888888888888 7 7 11111 0 7 44 99 6 7 3 666666 7 7 99999999 6 7 777 1 3 6 4 0 222222 222222222222 7 0 22 777 2222 6 3 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 5 0 5 7 7 6 88 2222222 8 0 0 4 6666 8 8 8 2 33 0000 5 555 000 0 5555555555555555 0 7 7 7 7 7 0 0 0 222 0 2 000000000 22 555 2 5 2 000 0 222 2 0000 55 0 4 88 0 1111 0 7 99 6 0 7 7 00 7 00 888 8 4 8 4 8 0 44 0 00 0 8888888888888 2 2 55 88 0 0 2 55555 0 88 0 8888 0 555 22222222 0 5 5 0 8 0 3333 3 7 7 3 7777 333 3 0 0 7 0 0 3333 3
consensus : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCGAGGNGTAAAGTCTGGTGGGGCTTAGCNCANGTTCATTCTAGCAAANTCATTCGATTTTATTCAATTGCCATTTTCTCCTTGTTTT-TTC-TTTCCAGNGTCGNTCCA-GTTAGGGTTATG-GTCAATAACCACNACCGTC----ATGTCTTCCCATTC------G-TGACCNT-CGAGATCGAAATGCTCC----------GCGAC--------TGGTTCT------------GTCTTAATG-GTGGACCGGTGGTTGTTGATTCTTCTACGGAGGTCACCT-GTTTCACCTACGTACTGC-TTTTGG---CANACCTTACAACCGATAAGGTAGACGCAGTTGTCCGTGCGACA-GGACGTNGCT-CCCAANATTTTGTAGCTNCG-NCCTGTGACAGGGCTGCTGAAANTGTCAG----T--GC---C---GCTGCGTTTGCACATNAGGCATCT-G-C--A-TCNGA--ACANGTNTTGAAACCNCCGTTGGGTAATGGGTTATCCAGCCTAGTTCTAACTACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATNG-GNGGNTCTTTG--AAGACCCTAGCCATTCNTTNGTTGNTGTGNAGAATGGGNAAATG-----NCT-TC-TCAGGATGNTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCG-CCT-TCTTCTCT-C-GNTTATATTGAAGNAGGGATTCTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGNTTGCACT-CGGG-G--GCTTTG-TAGCCTCTCTTGCACAGGTGNTTTTTC--GATGG-NTGCT-TTGTTCTTATA-----GA----AA----GTG-C-AGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCCTTAGGTACTCCTTTGAAGGTAT-----GA-A-TGG----CA--ACTNGATGGCAT---ATATATAAATGTGAGTCAGCGGGTTTNGTGTGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANCGTG---GAAGTGGTA----TCCAAGAATACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----A-----TAAAGTTNTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAA-GG-CGATTGTCTGAGT-AAGTTGCGTTCAAATCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCACTNACTTGTAAGTAATGTTCGCCGTTGAACGCGAAGTTATTGAGTTTGAGGACATNA--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTGTCAGGGCCCTGCTATCCCAANCCTCTCTGCAGGCTTCAATGCCTTCCATCGTGGGGGATGTTCGTGTAAAGCGAAGTCGTATCCATGGTCGCGAGGNGAATATNGTCNGGCAGGTTNNAANAAAGGT--TTTTG--TTA-AGGTAACCAGTNGTGTCCTTCAGGTATGACGGTAG---CTTNACAACGTGCGGACG----GAGATGTAGGTCAATGAATT-CTGAGATTTTCTCCGTGGGGTGTCCGATGGCACTCACTATGGGACGGCCAGGCATGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GG--TCTACAGTCGAG--AGGCAGCAATGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTNTCGNTGATNGTGGCAGAAAACGTT--TTNGTGGGGTCGGAGTCCAG-T-------TNTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCCGCTACGTATG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CCG---TTNTTTT---AGC--CT---NAAGGNCAGCTCTCTCTTCTTTGCTNAGATTGTCC-GGAATA-TT-CTGTTTCGTCGAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTNGATGTAGGACTCGANGGCCGCACATTTTNCTANTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAG-AGTTT
Reference ( family-3283 ) : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCGAGGNGTAAAGTCTGGTGGGGCTTAGCNCANGTTCATTCTAGCAAANTCATTCGATTTTATTCAATTGCCATTTTCTCCTTGTTTT-TTC-TTTCCAGNGTCGNTCCA-GTTAGGGTTATG-GTCAATAACCACNACCGTC----ATGTCTTCCCATTC------G-TGACCNT-CGAGATCGAAATGCTCC----------GCGAC--------TGGTTCT------------GTCTTAATG-GTGGACCGGTGGTTGTTGATTCTTCTACGGAGGTCACCT-GTTTCACCTACGTACTGC-TTTTGG---CANACCTTACAACCGATAAGGTAGACGCAGTTGTCCGTGCGACA-GGACGTNGCT-CCCAANATTTTGTAGCTNCG-NCCTGTGACAGGGCTGCTGAAANTGTCAG----T--GC---C---GCTGCGTTTGCACATNAGGCATCT-G-C--A-TCNGA--ACANGTNTTGAAACCNCCGTTGGGTAATGGGTTATCCAGCCTAGTTCTAACTACCATGTCCTTTANGTTTCTAGGT-CG--TCTGAAGGCCG-CCATNG-GNGGNTCTTTG--AAGACCCTAGCCATTCNTTNGTTGNTGTGNAGAATGGGNAAATG-----NCT-TC-TCAGGATGNTGTTGAAGTTCTTNAGGGCGGGGTGGNATGTAGTGACTAAGNGGA---CT-CTATCG-CCT-TCTTCTCT-C-GNTTATATTGAAGNAGGGATTCTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGNTTGCACT-TGGG-G--GCTTTG-TAGCCTCTCTTGCACAGGTGNTTTTTC--GATGG-NTGCT-TTGTTCTTATA-----GA----AA----GTG-C-AGA--G--GAGCAGATACGACGNA-CTCGT-GTGGCTAA--ACCCTTAGGTACTCCTTTGAAGGTAT-----GA-A-TGG----CA--ACTNGATGGCATGGAATATATAAATGTGAGTCAGCGGGTTTNGTGTGGAGGCTG------AATTC---------G--ATTTCACCGTTCAAGANCGTG---GAAGTGGTA----TCCAAGAATACGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGATGAAATGAGT---TGG-T-----A----A-----A-----TAAAGTTNTCAAGNCTATCTCG-GCCCTCCGTCCATTTCATCTCAATGTCATCNATGAAACGCAACCAACTATGGGGTTTAAA-GG-CGATTGTCTGAGT-AAGTTGCGTTCAAATCTTCCCATGAAAATGTNGGCATACGATGGAGCCATCTTCGTTCCCATAGCTGTGCCACTNACTTGTAAGTAATGTTCGCCGTTGAACGCGAAGTTATTGAGTTTGAGGACATNA--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTGTCAGGGCCCTGCTATCCCAANCCTCTCTGCAGGCTTCAATGCCTTCCATCGTGGGGGATGTTCGTGTAAAGCGAAGTCGTATCCATGGTCGCGAGGNGAATATNGTCNGGCAGGTTNNAANAAAGGT--TTTTG--TTA-AGGTAACCAGTNGTGTCCTTCAGGTATGACGGTAG---CTTNACAACGTGCGGACG----GAGATGTAGGTCAATGAATT-CTGAGATTTTCTCCGTGGGGTGTCCGATGGCACTCACTATGGGACGGCCAGGCATGCCCTCTTT--GTGNATTTTAGGNAGTAAATAAAATTGTCCA-GG--TCTACAGTCGAG--AGGCAGCAATGTTTCAAAGACAT--TNTCACCAATTTCCTCGTCTTTGTACATCTGCTTAAGAGTNTCGNTGATNGTGGCAGAAAACGTT--TTNGTGGGGTCGGAGTCCAG-T-------TNTAGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGCGCTTCCGCTACGTATG-TTNTCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTT-TTACGACAATGTCGTC-CCG---TTNTTTT---AGC--CT---NAAGGNCAGCTCTCTCTTCTTTGCTNAGATTGTCC-GGAATA-TT-CTGTTTCGTCGAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTNGATGTAGGACTCGANGGCCGCACATTTTNCTANTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAG-AGTTT
gi|1 : CAATGGAATTCACTACGAGTATAGGTCGTGAAGAGAGGCAAGGTGTAAAGTCTGGTGGGGCTTAGCTCAAGTTCATTCTAGCAAATTCATT-GATTTTATT--ATTGCCAATTTCTCTTTGTTTTATTC-TTTC-AGAGTCACTCCA-GTTAGGGTTGTG-GTCAATAACTACGACCGTC----ATGTCCTCTTA-------------------CGGGTTCG-------------------GTGAT--------TCGTTTG------------GTCTTTATA-ATATACCGGTGTTTGTTGACTCTTCTTCGGAGGTCACCT-GTTTCACATACCTACTGC-TTTTGG---CATTTCTTACAACTGATAAGGTAGGTGCAGTTGTCAGTGCGGCA-GGACGAAGCT-CCCAAAATTTAGTAGCTCTG-TCCTGTCACCGGACTGCTGAAAGTGTCAG----TTGGC---CC--GCTGAATTTGCACATGAGGCATC--A-CTTA-TCAGA--ACACGTGATGAAACCCCAGTTGGGTAATGGGTTATACAGCCTAGTTCTAACTACAATGTCCTTTATATTTCAAGGT-TG--TCTGAAGGCCG-CCATTG-GAGGGTCTTTA--AAGATCCTAGCCATTCGTTTGTTGTTATGCAGAATGGGCAAATG-----GCT-TT-TAAAGATGGTATTGAGGTTCTTCAGGGCGTGATGAAATGTAGTAACTAAATGGA---CT-CTATTG-CCT-TCTTCTCTCC-GGTTATATAGAAGCAGAGAGTTTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGCTTGTACT-CGAACA--GCTTTA-TAGCCTCTTTTACATAGGTGGCTTTTC--AAGAGTCTGCT-TTGTTTTTCTAATTCCGA----A-------C-C-AGA--G--GAACAGATACGACGAA-CTCGT-GTAGCTAA--AACCTTAGGTACTCCTTTGAAGGTAT-----GAGA-TGGGTGACA--GCTTGAAGGCAT--CATGTATAAATGTGAGTCAGCGGGCTTTGTGTGGAGGTTG------AATTC---------A--ATTTTATCATTCAAGAGAGTG---GAAGTGATA----TCCAAGAATATGTTCTTGGAGCTGGAAATTTC---------CA---------T-----------TG--GAA---TGGTGAAATGAGT---TGG------------------------TAAAGTTTTCAAGCCTATCTCG-GCCCTCCTTCCATTTCATTTCAATGTCATCAATGAAACACAACCAACTATGGGGTTTAAAGGG-CGATTGTCTGAGT-AAGTTGTGTTCCAATCTTCCCATGAAAATGTTGGGATACGAATGAGCCATTTTCGTTCCCATAGCTGTGCCACTAACTTGTAAGTAATGTTCGCCGTTGAACACGAAGTTATTGAGTTTGAGGACATAA--TCAAGGAGCTTGACCAATTATTCTGTGGAAGGA---TGTGTCAGAACCCTGCTATCCCAAACCTC----------------CCTT-CATCGTGGGAGATGTTTGTGTGAAGCAAAGTCATATCCATGGTTGCGAGAAGGATATTATCAGGTAGGTTGGAAGAGAGGG--TTTTG--TTA-AGGTAATCAGTGGTGTCCTTCAAGGATGATGGTAG---TTTAACA---TGTAGGCG----GAGGTGTAGGTCAATAAATT-CTGAGATTTTCTCCTTGGGGTATCCAATTGCACTCACTATAGGGCGGCCAGGCATACCTTCTTT--GTGGATTTTAGGCGGTAAATAAAATTGTCCA-GG--TCTACAGTTGAG--AGGCATCAATGTTTCAAAGACAT--TATTACCAATTTTCTCGTCTTTGTACATTTGCTCAAGAGTGTCGTTGATTGTGGCAGAAAACGTT--TTGGTGGGGTCGGAGTCCAG-TTTAGCAGTTTAGTGTAAAACCGTTCATCCGGGACATGTCTGTGCGCTTCCGCTGTGTATA-TTATCTTGTCTAATACCACCAATGTTGACCCTCTGTCTGCTTTTTTTTT-TTATAACAATGTCATC-CCGT--TTGTTTT---AGCT-CT---TAAGGCTAAC-CTCTCTTATTTGCTTAACTTGTCCGGGAATATTT-CTGTTTTGTTGAG-TAG--T-TTTTCAATGTC---CTGCTCAACTAATTCGATGTAGGGCTCGATGGCTGCACATGTTCCTATTGGAGGTTCCCATTTGCTCTTAGGTC----GGTAGTAGTTT
gi|10 : ACTGC-TTCTGATGACAAACTTTGCAACCGAGGAGATAAACAAAGTTATT-----------GAAGTCGC---CTAATATTCTGTAACTACG-GTCTGTGATAGGACTGCTGAAGGTCTCAGGGGGT--AG---A---GTTGTATTTGCA--TAAGATATCT-G----A-GATGATGATAGATCTTAAATCCTCCAATCGGTAATAGGTTGTCCAGTCTAGTCCTCACCAATATGTCCTTTATGTTCCT-GGTGCA--CCTAAGGGCAGTCCGTAG-GTGGACCTTT------------GTCATTCGTTGGTTCTTGTGTAGAATAG--AAATG-----A-------CAGGATGGT----AAG----------------------TGGTGACTAAG-GGA---CC--------CCT-GCTTCTCT-C----TACATTGTAAAATAGATCGTCTGTCTTGTTC-GGTTAACTCATCAACTG
gi|11 : CCTGTGATAGGACTGTTCAAACTTTCAG----T--GT---CTGAGCTACATTCGCACAATTGATGTCT-G-A--GGTCTGA--GCATATGTTGAAACCTCCATTAGGTAAAGAATTATCCAGTCTATCCCTAACATCCATGTCCTTTAGGTTTCTAGG--CG--TCTGGAGGACG-GCATAG-GGGACTCATTG--AAAACATCAGCCTTTCATTTATTGGGATGCAGAATGGGCAGATA-----CCG-TC-TCGAG-------------TCTTGAGGGCGGGATGGTATGTAATagg
gi|12 : -AGA--GA-GAGCA--TGTGACAAAACTCTT-GTGCCTAC--ACCTTTAGGTACTCTTATAAAGGTAT-----AA-A---G----------TGGATAGCATAAGATACA-GAATA-GAATCCACAGACTTTGTATGGAGGCTGCATCAGAATTCTTGCATAATG--ATTTCATCATTtttgaggtaaatgacttttgaggatctttccttgtttt
gi|13 : aaaacatccttttaacagatagctttgcttttaaatactctactctgttttggaatgctgtgggagaagATGATGGTAG---CTTCATAGCATATGGACATGCAGAGATGTAGGTCAATCAATT-CTGAGATTTGCTCCGTGGGGTGCCCAATGGCACACACTATGGG-TGACCAGGCACACCCTCCTT--GTGGATTTTAGGCAGTAGATAGAATTGCCCA-GGTATATACAGTTGAG--AGGAAGCAATGTTTCAAAGACAT--TTTCACCAATTTCCTCGTCTTTGT-----------AGAGTTTCACTGATGGTGGCAGAAAACGCT--TTattgagattaacaaaattgggaacattttcaag
gi|14 : aaaACAGTTGAG--AGGCAGCAATGTTTCAAAGACA-------ACCAATTTTGTCATCTTTGTACATCTGCTTAAGAGTGTCGGTGATTGTGGCAGAAAACGTT--TTGGTAGGGTCGGAATCCAG-T-------T-TAGTGTAAAACCGTTCATCCGAGAGTTGTCTATGCGCTTCCTCTA--TATG-TTGTCTTGTCTAATACCACCACTGTTAACg
gi|15 : TAGTATGGAGGCTG------AATTTT--------A--ATTTCACCATTCCAGAATGTG---GAAGTGGTA----TCCGAGAATACGTTCTTGGAGCTAGAAATTTC---------CA---------CTGTAAATTTTATG--GAA---TGATGAAATGAGT---TAG-TTAAGGA----A-----A-----TAAAGTTTTCAAGTTTATCTCG-GCCCTCCGTCCATTTCATCTCAATGGCATCAATGAAATGCAACTAACTATGGGGaatgtcatactggttttatcaaaatgtc
gi|17 : acaagtgtgaataGTG---GAAGTGGTA----TCCAAGAATACGTTCATGGAGCTGGAAATTTC---------C--------------------------------------AATG---------------------------------TAA---TCT---GTCTATTTTC-GCCCTCCGTCCATTTCACCTCAATG---------AAACGCAACCAATTATGGGGTTTAAA-GG-AAGTTGTCTGAGC-AAGTT-----------TTCCAATGAAAATGCGGGGATACGATGGAGTCATCTTCGTTCCCATAGCTATGCCACTTACTTGTAAGTAATGTTC
gi|18 : aTCATGTTTCT--GT-TGCCTCTGAAGGATG-TCATAGTGGGGGTCTTTG--AAAACATAAGACGTTCATTTGTCGGCCTACTGAATGGGTAGACA-----TTT-TC-TCAGAATGCATTTGAAATACTTGAGGGCGGGATGGTAAGCAGT
gi|2 : atcagtattgaATTGTATGAGG-ATGTTGCGTTCAAGTCTTCCCATGAAAATGTTGGCATACGATGGAGCCATCTTTGTTCCCATAGCTGTGCCACT----TGTAAGTAATGTTCTCCGTTGAACATGAAGTTGTTGAGTTTGATGATATGT--TCAAGGAGCTTGACCAACGATTCTGTGGAAGGAATTTGTG---GGGCCTTGTTATTCCAACCCTCTCTGCAGGCTTCAATGCCTTCCATCATAGGGGATGTTCTTATAAAGTGAAGTCACATCCCTGGTCACAAGAAGAATATTGTCAGGTAGGTTGGAAGAAGGGT--TTTTG--TTA-TGGTAGCTAGTA-----------GTATGATGGTAG---CTTTACAACATGTGGTCG----GAGATGT---CCAATGAttgtcattttgaggttttctctgtattgtttga
gi|2 : GAGATGTCCAATGACACC----ATGGGACGGCCAGGCATACACTCT------G---TTTAGGGGGTAGATAAAATTGTCCA-GA--TCTACAGTTGAG--AGAAAGCAGTGATACAAAGACAT--TGTCACCAAGTTCCTTGTCTTTGTACATCTGCTTAAGAGTTTTTGTGATGGTGGCAAAAAACGTT--TTCGTAGGGTTGGAGTCCAG-T-------TA-AGTGTAAAACCGTTCATCCGAGAGTTGTCTGTGTGCTTCTACCATGTATG-TTTCCTTGTCTAATACCACCACTGTTGACCCTTTGTCTGC---CTTTTTGTTA--ACAATGTCATC-CTG---GTCTTTT---AGC--TTTTGTAAGACTGAC-CT---TTCTTTCCTTAGATTGTCCTGGAACC-TTGCTGTTTTGTCAAG-TAG--T-TTTTCGATGTC---CTGCTCAACTGCTTGGATGTAGGACTCGAGGGCTGCACATTTTACTGATGGAGGTTCCAATTTGCTCTTAGTTC----GGTAG-AGTTTcaccatgggacggccaggcatacactctgtttagggggtagataaaattgtccagatctacagttgagagaaagcagtgatacaaagacattgtcaccaagttccttgtctttgtacatctgcttaagagtttttgtgatggtggcaaaaaacgttttcgtagggttggagtccagttaagtgtaaaaccgttcatccgagagttgtctgtgtgcttctaccatgtatgtttccttgtctaataccaccactgttgaccctttgtctgcctttttgttaacaatgtcatcctggtcttttagcttttgtaagactgacctttctttccttagattgtcctggaaccttgctgttttgtcaagtagtttttcgatgtcctgctcaactgcttggatgtaggactcgagggctgcacattttactgatggaggttccaatttgctcttagttcggtagagttt
gi|20 : attgtatgaggatgttgcgttcaagtcttcccatgaaaatgttggcatacgatggagccatctttgttcccatagctgtgccacttgtaagtaatgttctccgttgaacatgaagttgttgagtttgatgatatgttcaaggagcttgaccaacgattctgtggaaggaatttgtggggccttgttattccaaccctctctgcaggcttcaatgccttccatcataggggatgttcttataaagtgaagtcacatccctggtcacaagaagaatattgtcaggtaggttggaagaagggtttttgttatggtagctagtagtatgatggtagctttacaacatgtggtcg-G--GCTTGG-TTGCCTCTCTTGCAC--GTTTTTTTTT--GATGG-ATGCTCTTGTTCTTATA-----GA----AA----GTG-C-AGA--GTAGAGCAGATATGGCGTA-CTTG--GTGGCTAA--ACCTTTAGGTA-----TTG--GGTA------GA-A-TGG----CA--ACTAGATGGCATGGAAT-TATAAA
gi|21 : a-G--GCTTGG-TTGCCTCTCTTGCAC--GTTTTTTTTT--GATGG-ATGCTCTTGTTCTTATA-----GA----AA----GTG-C-AGA--GTAGAGCAGATATGGCGTA-CTTG--GTGGCTAA--ACCTTTAGGTA-----TTG--GGTA------GA-A-TGG----CA--ACTAGATGGCATGGAAT-TATAAAatacatcacgaggcagccgagt
gi|22 : aTTTTAATG-GTAGACCGGTGGTTATAGATCTTTCAACATAGATACCCTAGTTTCACCTACGTAGCG----TTGGTCACAAACTTTGCAACTTTTAAGATAGATACAGTCGTCCGTGCGACA-GGATGTGTCC-TCAAGGA--TTATAATATAA-GCCAGTGGCAGGGCTatacatcacgaggcagccgagt
gi|24 : tcTTTTTCCT-GTCTT-TTC-CTCTCTGCATCGGTCCATGTT-GGGTTATA-ATCGATAATCACCACCTGC----ATATCTct
gi|25 : atgcgcacgaaatcattcagtttgttcattccatctgggcggaatgatttcaagcgatgcatctatga-----GG-A-TGG----CGGGATTAGAT---AT---ACATATAGATGGCAGTTAGCAGTTTTGGCGTGGAGCCTG------AACTC---------G--ATATTTCCGTTAACGACCTTA---GACGTGCTG----TCTAGAAAGACGATAGTGGATGTGGAAAT
gi|27 : aggaAGGCGAATTTGGTGTTGCAGGT-CCAATAAATGTAATTTTAATTTA-GGGTAACCATTCGGGTCCTTAAGGTGTGACGGTAAATCCTTTACA---TGCTGACG----GGG
gi|28 : tgaaagttcaataattatcCTTTA-TAGCCTCTCTTGCACACATGGTTTTTC---ATGG-TAATT-TTGTTCTTG-A-----TA----AA----GTG-CAAGATTG--AAACAGATGCGATGGA-TTCGA-AGGGCTAAGTACTCTCAGGTATTCCTTTg
gi|29 : TGGGATGTCCTGTAGCAATGACTATTGGACTTCCATGCATGTTTTTTTTTTATGAATTTTAGGAATTAAGTAAA-TTTTCCT-GA--TCTACAGTCG
gi|3 : TGAAACCCCCGATAGGTAGTGGGTTATCCAGCCTAGTTCTGACTACAATGTTCTTTAAATTTCTAGGT-TG--TCTGAAGGCCT-CCATTG-CAGGGTCTTTA--AAGACCCTAGCTATTCTTTCGTTGTTATATAGAATAGGTAAATG-----GCT-TT-TAAGGATGGTATTGAAGTTCTTCAGTGCGGGGTAAAATGTAGTCACTAAGGGGA---CT-CTATTG-CCT-TCTTCTTT-CTGTTTATATAGAAGCAGGGAGTTTCTGTC-TGTTCTGGACAACTCGTCAATTGCTGGTTGTACT--GGA-GCAGCTCTA-AAGCCTCTTTTACATAGGTGACTTTTCAGGA-GT-TTGCT-TTGTTTT---------GAGTTTAATTTCGTGAC-AGA--G--GAACAGATACGACAAA-CTTGT-GTTGCTAA--ACCCTTAGGTACTCCTTTGAAGATAT-----GA-GGTGGGTAACA--GCCTGAAGGCATC--ACATACCAGTGTGAGTCAGTGGGTTTTGTGCGGTGGCTG------AATTC---------A--ATTTCACCGTTCATGAGAGTGATCGAAGTGGTAAGTATCCAAGAATACGTTCTTGGAGCTTGAAATTTC---------CT---------T-----------TG--TAAATTTAATGAAATGAGGAAATGG-T-----A----A-----AGGAGATAAAATTTTCAAGTCCATCTCG-GCCCTCCTTTCTTTTCAACTCAATGTCATCTTTGAAACCCAACCAACTATGAAGTTTAAA-GGCCGATTGTCTGAGTAAAGTTGCATTCAACTGTTCCCATGAAAATGTAGGCATACTATGGAGCCAttggaacaaagcacttc
gi|30 : TCAATAACCACCACCGTC----ATGTCTTCCCATGCATATGAG-TGTCCCT-CGAGATGAAAATGCTCG----------GCGAC--------GGGTTCTTGGACCCTTTTGGTTCTTATG-GTAGACCGATG
gi|31 : ACGTTTTTCAGATTTCCTGGG-CG--TCTGAAAGCCA-CCATGG-ATGGTTCTTTG--AAGACCATGGCCATTCTAGAGGTAATGTGAAGAGTGGGAAAATG------CT-TC-Ta
gi|33 : ttcagGTTAATGAATTTCTGGGATTTTTTCCGTGGGGTGTCCG-------TCA------GACACCCTGACATGGCTGTTTT--GTGTATTTCGGGTAGCAAATAAAATTGTTCA-tc
gi|34 : TG-ATCAATAACAA--AC--TCATGAATGTCATCCCATTC------A-GGACCAT-TGAGGCTGAGACGTTCC----------ATAAC--------TGGT--T------------GTTTTGACG-GTGGATCGGcttc
gi|35 : agaatagTTGTCTGC-----TTTT-TTATGACTATGTCGTCACCGGTTTTTTTTT---AGCAATT---GGAGGACAGCTCTCTCTTCTTTGCTGAGATTGTCT-G
gi|38 : ACAATGGGGCGGCCAGGAATATTCTGTTT--GTGTATTTTAGGAAGCATGTAAAATa
gi|39 : ctactgcagatTCAATAATCACTACTGTC----ATGTCTTTCCATTT------GTTGA--ATGCAAAATTAAAATGCTCG----------GTGAC--------
gi|4 : aAGAATTATG-GTCAATTACCACTACTGTC----ATATCCTCCCATCT------G-TGACCAT-TAAGATTGAGGTGTTCC----------CCGACGGGCTCTTTGGTTCTTTTT--------GTCCTAATG-GTGGATCGGTGGTTGTTTATTCTTTGGCGGATGTCACCC-GTTTCTCCAACATATTGC-TTTGAG---CAAACCTTACAATTG---AGATACACACAGTTGTCTGTGTGACA-GGACAT-GTTACCCAATATTTTGTAGATGCG-ACCAGTAAC-GGGCTAGTAAATTTGTCAG----T-----------GCTGTGCTTACACAAAAGGCATCTGG-C--A-TCGGA--ACAAGTTTTAAAACCACCATTGGGTAATGGGTTGTCTAATTTCGCTCTCACTACCATGTCCTT----TTCCTAGGC-CG--TCTAAATGCAG-CCATTG-GTGGATCCTTGAAAAGATCC--GTCATTCTTTTATTATTGTGAAGAATATGTACATGTAGATTCTCTC-TCAGGATGCTGTTAAAGTTCTTAAGGACGGGGTGAAATGTTGTGAC-ATGTGGAACCCTACTATTGTCTT-TCTTCTC-----ATTGTATTGAAAAAGGGTTTCCCTGTT-CTTTGTGGTTATCTCATCAATTGCGGATTGCACTGTGTG-G--GCTTTG-TAGCCTCGATTACACAGATG
gi|40 : gCAGGTTTTAAAGCCATCATTGGGTAAAGGATTTTCCTACTTGGTTCGAACCACCATGTCTT
gi|5 : G--TCTGAAGGCTG-TCATGT-GTCGTTCTTTG--AAGATCATGGCCATTCTAGGGGTAATGTGAAGAGGGGGGAAAT------ACT-TCTTCAGAATTTTGTTCAAATCTTTTAAGACAGGGTGGTACGTAGTGACCACTGGGA---CT-ATGTCA-CCTATCGATTCG-T-GTTTGTATTGTAGTAGGGATTCTCTGTCGTGTTCT-GACATCTCATCAACAGCTGCTTGCACT-TTGG-G--GGTTTGATAACCTCTCTTGCACAGATG--TTTTA--GATGG-GTGCT-CTGTTCTT-TA-----TG----AA----GTG-C-AGAGTG--GAGCAGGTACGACGGA--TTGTGGTGGCTAC--ACCTTTAGGTACTACTTTGAATGTATCAGTAGG-A-TGA----CA--ACT--ATG-------AGATACAAATTTGAGTCAGTCGGTTTGGTATGGAGACTG------ATTTC---------AACATTT--CCGTTAAAAATCTTG---TTAACAG-A-------AAAAAGACGTTACTGGATGTGGAAATATCAACAGTTAACA---------TGA---------TC--AAA---TTATGGAATGAGT---TGGCT-----AGTTTA-----A-----TAAAGATGTCAAGATT-TCTCATACTTTTTACCCACTTCGTCGCAAT
gi|6 : AATT-CAGATAATCTCTCCGTGGGATGTCTGATGGCACTGACAATGAGTCGACCAGGCACGCCTTCTTT--GTGAATTTTAGGGAGAAAATAAAACTG-CCATGG--TCTGCAGTC-AGCCGGACAG-AGTGCTTCGTAAACGTAGTCTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTCCTCTGTGGGGTCTGAATTCAGCT-------TCT--TGTAATACTGCTCATCAGATAGCTGCCTGTTGGCTTCAGCTACATACGATTCTCT-GTCTAGAACAACTACTGTAGACCCTTTGTCTG----CTTTCT-TTACGACAATATCGTC-ACG----GGTTTTGAGAGA--CT---GAAGGGCAGCTCTCTCTTCCTTGTTGAAGTTATCC-GAAATA-TA-TGG--TCGTTGAGACAGGATATCTTCGATATTAGACTGC---ACTGCGTAGATATAAGATTCCAAGGCCCCACATTTTTCAAGTGGAGGTTCCCAGGGATTCTTAGGCTTACAAGTAG-AGTTTcaacttacagacc
gi|7 : CCAACAAAATATTCTTGAAGTTGGAAATTTC---------CACCGTGAACCT-----------TGTAGAA---TAATGGAAAGAGT---TTG-C-----A----GTCATGA-----TAAAGTCATAGAGGCTTTCGCG-ACTTTCAAACCACTTCATTTCAATGTTATATGTGAAATGTAGCCAACTACGAGGTTTA-------GATAG--TGAAT-GA-TTCCATT---ATCTT--TATAAAA-------CCCAAAATGGTGTAATTTTTGTTCTCATAGTTGTGCCACTGATTTACAGATAATATGAGTCCAAGAA-GCTAAGTGATTCAGTTGAAGAACATTACCTCAAG
gi|7 : ATGTATGTGTAAAGTGAAATAGTATCCATGGTCACAAGGCGAGTATGGTCTGGCGGGGTTTAATATAGGT-----------ACATGTAATCAGATGTGTTCTTCAGGTATGACGGTAA---ATCGTCTATGTGCTGACG----GAGATGCAAGTCATTGAATT-CAGATATTTTATCTTTGGGGTGTCtgtaatgtatgtgtaaagtgaaatagtatccatggtcacaaggcgagtatggtctggcggggtttaatataggtacatgtaatcagatgtgttcttcaggtatgacggtaaatcgtctatgtgctgacggagatgcaagtcattgaattcagatattttatctttggggtgtc
gi|8 : ccaacaaaatattcttgaagttggaaatttccaccgtgaaccttgtagaataatggaaagagtttgcagtcatgataaagtcatagaggctttcgcgactttcaaaccacttcatttcaatgttatatgtgaaatgtagccaactacgaggtttagatagtgaatgattccattatctttataaaacccaaaatggtgtaatttttgttctcatagttgtgccactgatttacagataatatgagtccaagaagctaagtgattcagttgaagaacattacctcaagtgtaCAATGAAATTTAC-ACGAGTATAGGTTGTGAAGAGAGGCGAGGAGTAAAGTCTGGT-GGGCTTAACATACGTTCATTCT-GCAAAGTCATTCGATTTTATTCAATTGCCATTTT
gi|8 : ATTTTCTC-TTGTTTT-TTCGTTTCAAGAGTCACTCCA-GTTAGGGTT-TGCGTCAA-AACTACGACTGTC----CT-TCTTCCCATTT------G-TAACCCT-CTAGGTTGAAATGTTCCCAACGGTTCGGTGAT--------CCGTTTG------------GTCTTAATAAGTGA--CGGTGATTGTTGACTCTTCT-CGGAG-TCACCT-GTTTCACCTACGTACTGCTTTTTGG---CATTTCTTACAACCGATAAGGTAGAT-CAG-TG-CAGTACGGCAGGGACATAGCT-CCCAAAATTTTGTAGCTCTGTTCCTGTCACCGGGCTGCTGAAAGTGTCAG----T--gaggccgaaatgactttaaatctgtgcatcagaattttctcttgttttttcgtttcaagagtcactccagttagggtttgcgtcaaaactacgactgtccttcttcccatttgtaaccctctaggttgaaatgttcccaacggttcggtgatccgtttggtcttaataagtgacggtgattgttgactcttctcggagtcacctgtttcacctacgtactgctttttggcatttcttacaaccgataaggtagatcagtgcagtacggcagggacatagctcccaaaattttgtagctctgttcctgtcaccgggctgctgaaagtgtcagt
gi|9 : caatgaaatttacacgagtataggttgtgaagagaggcgaggagtaaagtctggtgggcttaacatacgttcattctgcaaagtcattcgattttattcaattgccattttgaggccgaaatgactttaaatctgtgcatcagaTCTCCTTATTTT-TTC-TTTCCA-TATTGGTCCA-GTGCACGTTTTG-GTCAATAGCCACTACTGTC----ATGTTTTCCCATTC------A-TGTCCTG-CGAGATCGAAATGCTCT----------GCAAC--------TGATTCT------------TTC--AACC-AT---TTGGTAGTTATTGATCCTCCTACGTAAGTCTCCT-GTTTCATCTACGTATTGT-TGATCA---CAGAGCTTACAGTTTATGTTGGAAATGCAATTATCCGTGCGACA-GGCTGTTTCC-CCCAGAATTCAGTAGTGTCA-ACTTGTGACAGGACTCTTAAAACTGTTAC----T--TCTAGC---GCTGTGTTTGCATATCGGGCATCT-ACC--A-TCAGA--ACATG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TGGTGATAGACTCGCAGACAAAAAAATGAACGGCAACCCCCAACCCCCCCTCCCCCCCTCCAGAACAACACCTAATATTAACCACGAGTCAGAAACTATGTCACATTCATTTGTTTGTGTCATGTCATTGGAGGCAATGACCTCCAACCTAATACTGATAGGCATCCAAAACTTCTTGGAGCCTTTTTCGTTGTCTTGTCGCAATATCGACCCAGT
Unaligned ( gi|19 ): GGTGAAGTCATTTAAGTTTATTCAAACCATCAGGGCAAAATGACTTCAGTCTACTTTGTCCAGAACTTCTCCTTGCCTATTCTCTCTGCATCAGAGAGGCATCTAGAGTCGTGATCTGTCATATCCTTCCATCTATGGCCATTAAGGCTGAAGTGATCCCCAACAGATTC
Unaligned ( gi|23 ): ATATTGCTCTAATGAACTGGTAATGGTTTAGCCCGTTGTCATCTTGGAAAAGTCATAGAGTTTGTTAATACCTTGATGTTCGAATGACTTCAGCCTATGCATTTAGAATTTCTCCTTTCGTTTTCTTTAAATATCTGACCA
Unaligned ( gi|26 ): GACTAGGACTGTCGATGAGATTCTCGGTGCTAGAGTTGTGTTTGCGTGATTCTAGACATCCTGATATCAGTATGTTAAAACTGCCTCCATTTAAGCATTAAATTGTTAAGTCTAGTCTTCATCA
Unaligned ( gi|32 ): AGCAAAGTAATTGAACTATTTTAAACCATCATGGTGAAATTACATCAGCCTGTGAATCTTCTCTTCTTCATCTCTGCAAAAGACTATCTAGACTCGTGAT
Unaligned ( gi|36 ): TCATTCTATTGAAATTTCTGGTATTTTTCCTGCCATAGGGGCGGAATGATTGCAATATATGCATCGATCAAGGAATGTTAT
Unaligned ( gi|37 ): ATGATGATGCTCAAACAAAGAATAAATGACAAAATCCCCCACAGAACAACACATAGTATTAACTAGGCGAAGCTAGACCAC