lowQualScore : 11 555 111 1111 33 1 222 4444444444444444444444 2222222222222222222 333333333333333333333333 1 111111111 22222 2222222 11111111 1 333333333333333333333333333333333333 1 111111 1111111 1111111 22222222222222222222 2222222222 22 11111 111 22 11 33333 11111111111111111 11111 33333333 111
lowQualScore : 2 33 666 2 66 33 88888888 7 66 444 0 000 2 5 66 2 2 9 555 99 2 7777 2 33 2 55 3 8 4 6 6 4 3 5 2 3 3 44 3 44 111 3 999999 3 3 7777 2222222222222222222222 0 7777777777777777777 3 3 6666 999999999999999999999999 44 3 4 1 3 5 999999999 77777 1111111 3 3 1 3 66666666 5 44 3 7 2 888888888888888888888888888888888888 1 555 3 2 2 555 8 2 2 111111 8888888 3 44 3 3 7777777 77777777777777777777 9999 6666666666 22 2 99 33 11 2 3 6 00000 3 111 33 55 55 777 55 3 77777 66666666666666666 7777 888 55 00000 55 55 00000000 222
lowQualScore : . .. ... . .. .. ........ . .. ... . ... . . .. . . . ... .. . .... . .. . .. . . . . . . . . . . . .. . .. ... . ...... . . .... ...................... . ................... . . .... ........................ .. . . . . . ......... ..... ....... . . . . ........ . .. . . . .................................... . ... . . . ... . . . ...... ....... . .. . . ....... .................... .... .......... .. . .. .. .. . . . ..... . ... .. .. .. ... .. . ..... ................. .... ... .. ..... .. .. ........ ...
lowQualScore : 4 22 555 4 88 22 55555555 9 55 111 4 555 7 0 55 7 9 7 999 33 7 0000 9 99 9 00 1 6 8 0 8 8 1 5 2 3 3 66 3 66 444 3 666666 3 3 1111 0000000000000000000000 4 1111111111111111111 1 1 5555 666666666666666666666666 22 1 8 0 1 0 888888888 66666 7777777 1 3 8 3 33333333 2 22 1 8 9 333333333333333333333333333333333333 6 000 1 9 9 000 6 9 9 111111 2222222 1 66 3 3 0000000 11111111111111111111 2222 9999999999 55 2 22 99 11 9 1 7 66666 3 444 66 00 55 000 00 6 11111 66666666666666666 1111 333 00 11111 00 00 88888888 444
consensus : GTA-AA--A---AAG-TTTA-GCAACAA--A--------AGGT--TGAA---AAATTAT---A-TACGC-TTT-TCAGAGGC-AAAATGTT--AACA-TAT-TTATC--ACT-CTTAG--AA-TG-A-TTTTGATAACGATTTTCGTTT-AAAACAACCATAAAC-TTT-AAAA--C-GAAGGA--TTGTTTT-TCCT------G-T-TGC----CTTTT----C-TGG------C--AT-AAAAAAATGA-----G-------CCC-GAAAAGAAAA-GA-GT----GAAAAGGGGAGTTTT-TCAC-AAAA-ATGTGTGT--TTTCCT-ATTCATTGCTAA-TTTTT-------G-CCAAAAA--A-TCTCGTTTGATGAGTGGA-A-GT-TGCT-AACTG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-TTTTTT-T----------------GC-GAAT---GAAT-----TTTTTTT---TTCCTA-TGG-AGAGTT-AT---TCCA-TTGG-AATTT------TCAAACTTC-A---AT-TTT--G-CGAAA-ACGTCC-----TTTGGTTATA--------------------CTG---AAAAAA--TAA---AAGATGTCATTT-AT--CAATGA-A-AA-TTA-AG----TT-T--GAA-CACA--GT--G---T--AAGACA-TGCATG---TTT--A---GA---------TTT----TTTNA-ATTT--TTACAA---TTGTGAAA--TAT--TTTCAAGAGGT--C--AA-AAAATGTTGCTAAACTTTTTTTN-CTCAGTA
Reference ( gi|10 ) : GTA-AA--A---AAG-TTTC-GCAACAA--A--------AGAT--TGAA---AAATTATTATA-TATGC-CTT-TCAGAGGC-AAAGTGTT--CACA-CAT-TTAAT--ACT-CTTAG--AA-T--A-TCTTAATAGCAATTTTCATTT-AACACAACCATAAAC-TTT-AAAA--C-GAAGGA--TTATATT-TCCT------G-T-TGC----CTTTT----G-TAG------C--AC-CAAAAAATGA-----G-------CCC-GAAAAGAAAA-GA-GT----GAAAAAGGGAGTTTT-TCACAAAAA-ATGTGTGT--TTTCCT-ATTCATTACTAA-TTGTT-------A-CCAAAAA--A-GCTCGTTTGATGAGCGGC-A-GT-TGCT-AACTG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-TATTTT-T----------------GC-GAGT---GAAT-----TTTTTTT---TTCCTA-TGG-AGAGTT-AT---TGCA-TTGG-AATTT------TCAAACTCT-A---AT-TTT--G-CGAAA-ACGTCC-----TATGGTTATA--------------------CTG---GAAACA--TAA---AAGATGTCATTT-GT--CAATG--A-AA-TTA-AA----TT-T--AAA--ACA--GT--G---T--AAGACA-TGCATC---ATT--G---GA---------TTT----TTTTA-ATTT--TTACAA---TCGTGAAA--TAT--TTTCAAGAGGT--C--AAGAAAATGTTGCTAAACTTTTTTTT-CTCAGTA
gi|9 : GTA-AA--ATAGAAG-GTTA-GCAACTA--A--------ACGT--TAAA---AAATCAT---A-TGCGC-TTT-TCAGAGGC-AAAATGTT--AAGA-TAT-TTATC--ACT-CTTAG--AA-TG-A-TTTTGATGACGATTTTCGTTT-AATAGAA
gi|17 : tgaGTA-AAGAA---AAG-TTTA-GCAACAATCA--------AAATGTTGAA---AAATTAT---A-TACGC-TTT-TCAGAGGT-AAACTATA--AACA-TAT-CTATC--ACT-CTTAG--AA-TG-A-TTTTGATGACGATTTTCGTTT-AAAACAACCATAAAC-TTT-AAAT--C-GGAAGA--TTGTTTT-TCCT------G-T-TGT----CTTTT----C-TAG------C--AT-AAAGAAATGA-----G-------CCC-GAAAAGAAGA-GA-GT----GACAAGGGGAGTTTT-TCAC-AAAA-ATGTGTGT--TTTCCT-ATTCATTGCTAA-TTTTT-------G-CCACAAA--A-TCTCATTTGACGAGTGGA-A-GT-TGCT-AACTG-GAGATAT-----C--CAAAATGTTGATTAT--TCA-TTTTTT-T----------------acgaatgtctggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctagcataaaaatgagctctaaaagaaaaaaagtgaaaaagggagttttcatattcattactaatttttgccaaaagatttcgtttgatgagtggaagttgctaaaaggggataccaaaaatgttgtttattcattttttttttttttttttttttggcgaatggacattttttacctctggagagttattccattggaattttctaacttcagttttgcgaaagcgttctttggttatactgaaaaaattaagatagcatttatcaatgaaaattgagtttgaatcacagtgtaagacaggcatatttatatgtttttaatttttacaattgtgaaatattttcaagaggtcaaaaaatgtatctaaacttttttgcttggta
gi|15 : acttaGTA-AA--A---ATG-TTTTTGCAATAA--A--------AGGT--TGAA---AAATCAT---A-TACGT-TTT-TCAGAGGC-AAAATGTT--AACA-TAT-GTATT--ACT-CTTAG--AA-TGAA-T-TTGATAATGATTTTTGTTT-AA---AAC----AAC-TTT-AAAA--C-TAAGGA--TTTCTTT-TCCC------A-T-TTC----CTTTT----C-TGG------C--AT-AGGAAAATGG-----G-------TC------AGAAAA-GG-GC----AAAAAAGGGAGTTTTCCCCCCAAAA-ATGTATCTTATTTCCT-ATTTTTTGCAAA-TGTTT-------G-CAAAAAA--A-ATTCGTTTGATG-------A-GT-TGCC-AAACG-GGGATAC-----A--ACAAATAAAGTTTAT--TCCTTTTTTT-T----------------GC--------GGAT-----TATTTTT---TTCTTA-TGG-AGAGT---C---TCCA--GGG-AATCTAAACACTCAAAACCA-A---ATATTT--G-CCAAA-ATATCC-----Tttttt
gi|11 : actgaGTACAA--A---AAA-ATTA-GCAACAG--A--------AGGT--TGAA---AAATTAT---A-TACGC-TTT-TCAGAGGC-AAA-TACT--AACA-AAT-TTATC--ACT-C--AG--AA-T--GCTTTTGATAATGATTTTTGTTTTAAAATAACCATAAAC-TTT-AAAA--C-GAAGGA--T--TGCT-TCCT------G-T-TGC----CTTTC------TAG------C--A--TAAAATATTA-----G-------CCC-GTTAAGAGAA-GG-GT----G----------------------------TGTGT--TTTCCT-ATTCATTGCTAA-TTTTT-------T-CCAAAAT--T-TCTCGTTTGATGAGTGGA-A-GT-TGCT-AACTG-GTGATAC-----A--AAAAATGTTCGTTAT--TCA-TTTTTT-T-----------------------------T-----TTTTTTT---TT
gi|22 : actgaGTA-AA--A---AAGGTTTA-ACAACAA--A--------AGGT--TGAA---AAATTGT---A-TACGC-CTT-CCAAATGC-AAAATGTG--AACA-TAT-TTATC--ACT-CTTAG--AA-TG-A-TTTCGATAACGATTTTTGTTT-AATACAGTCATCAAT-TTT-AGAA--C-GGAGGA--TTGTTTT-TCCT------G-T-TGC----CTTTT----C-TGG------CTTAA-AAAAAAAT-A-----GCCCCCCCCCC-TAAA--AAAA-GA-GT----GAAAAAAAT-GTTTT-TCA-AAAAA-A--TGTGT--TTTCCA-ACTCATTGCTAA-TTttttttttttttttttttttttttggtgaatgaatttttttttcctatggagagttattccattggaattttcaaacatcgattttgcgaaaacgtcctttggttatactgaaataattaaaatgtcatttatcaatgaaaattaagtttgacatgcatgtttagaattttaatgtttacaattgtgaaatgttttcaagaggttaaaaaatgttgctaaacttttttgttcagtata
gi|14 : ataccgaGTA-AA--G---AAA-T----GCAACAA--A--------TGGT--TGAA---AAGTTAT---A-TGCTC-TTT-TCAGAGGC-AAAATGTTTACATA-CAT-ATCAT--A---CTTAG--AA-TG-G-TTTTGATAATGATTTTCGATT-GAAACAACCATGAAC-TTT-ATAT--C-G-AGGAGTTTTTTTT-TTCTTTTTTGG-T-TGC----CTTTTTCCGG-TA-------------TAAATAAT-A-----T-------CCC-GAAAAGGAAA-GA-GT----
gi|6 : gaTA-AA--AC--AAG-TTTA-GCAACAA--A--------AGGT--TAAA---AGATTAT---A-TACGC-TTT-TCAGAGGC-AAAATGTT--CGCA-TAT-T--ATTCACT-TTTAG--AA-TG-A-TTTTGATGACGATTTTCGTTT-GAAACAACCATCAAC-TTT-AAAA--C-GAAGCA--TTGCTTT-TTTT------A-T-TGT----CTTTT----C-TGG------C--AT-AGAAAAATGA-----G-------TC------GGAAAA-AA-GT----GAAA--------------------A-ATGTGTGC--TTTTCT-ATTCATTGCAAA-TTTTT-------G-TGAAAAA--A-TCTCGTTTGATGAG-GGA-ATTT-TGCT-AACTG-GGGATACA----A--AAAAATGATGTTTAT--TCA-TTACTT-T----------------GC-GATTGCGGAATTGGAATTTTTTT---TTCCTA-TGGAAGAGTT-AA---TCCA-TTGGAAATTT------TCAAACTTC-A---AT-TTTTGG-CGAAC-ACATCT-----TATGGTTATA--------------------CTG---AAAA-----AAATTAAGAT-TCATTTAAT--TTATGGAA-AA-TTA-AG----CT-T--GAAACACA--GTGGG---TAAAAGACA-TGCATG---TTT--A---GAATTTTAAATTTT----TTTTT-GTGT--TTACAA---TTGTGAAA--TCT--TTTCAAtttatttattcattttggggggtatgctttttttcaatggagagttattcagttagaattttgcgaaaacatcctttgggtataccgaaaaaatgaatattgcattatcaatgaaattttagtttgaaacacagtgtaggacatgcatatttagattgtttgcattttcacaatttacatatgttttcaagaggctaaaaatgttgccaatcatttttgttcagta
gi|13 : tgaaTA-AA--A---AAG-TTTA-GCAAC------------------------------------A-TACGC-TTT-TCAGAGGC-AAAATGTT--ATCA-TAT-TTACC--ACT-CTTAG--AA-TG-A-TTTTGATAACGATTTTTGTTT-AAAACAACCATACAC-TTT-AAAC--C-TAAGGA--TTGTTTT-TCCT------G-T-TGC----CTTTT----C-TGGAATTTTC--AC---AAAAATGtttaatgcgtaaaaagaaggtttgcttcacatgacattttactcaggtatacgtcatcatatacgtataaagtagcagaatgatcatgatatttgtaacaggtgtctaaggtcataataacaaaataattaaacaatgctaaactttttaaaaaataaatttga
gi|12 : taaagaaaacaaatatactgattA-AA--A---AAG-TTTA-GCAACAA--A--------AGGT--TTAATAAAAATTAT------ACGC-TTT-TCAGAGGC-AAAATGTT-------------------------AGGAAA-G--A-TTTTGATGACGATTTTCGTTT-GAAACAACCATCAAC-TTT-AAAA--C-GAAGCA--TTGCTTT-TCCT------A-T-TGT----CTTTT----C-TGG------C--AT-AGAAAAATGA-----G-------C-------GGAAAA-AA-GT----GAAA--------------------A-ATGTGTGC--TTTCCT-AT-CATTGCAAA-TTTTT-------G-TCAAAAA----TCTCGTTTGATGAG--GA-ATGT-TGCT-A-CTGTGGGATAT-----CTAAAAAATGTT---TAT--TCA-TTATTT-T----------------GC-GAAT---GA--------TTTTTT---TTCCTG-TGG-AGAGTT-AA---TCAA-TTGG-AATTT------TCAAACTTC-A---AT-TTT--G-CGAAA-TCATCC-----TTTGGTTATA--------------------CTG---AAAAAA--T-T---AAGATGTCATTT-AT--TAATGA-A-AA-TTA-AG----CT-T--GAAACACA--GT--G---T--AAGACA-TGCATG---TTT--A---GA---------TTTTTTATTTTT-ATTT--TTACAA---TTGTGAAA--TAT--TTTCAAAAGGTAAA--AAAAAAAAGTTGCTAAACTATTTTTA-CTCAGTAtatttttcctattcattgctaatttttgccaaaaatctcgttagatgagtagaagttgttaactgggaataccaaaactgttgtttattcattttctttcgcttttttaaatttatttatttatttttttcaaacttcaattctgcgaaaacgttatactgaaaaaattaagatgtcatttatcaatgaaaatgtagtttgaaacacagtgtgagaaatgcatgttcagattttttgaattttacaattgtgaaatattttcaagaggtcaaaaatatgttgctaaacctttttcgctcttat
gi|16 : tgaataA-AA--A---AAG-TTTA-ACAACAA--A--------AGAT--TGAA---AAATTAT-ATA--ACGC-TTT-TCAGAGGC-AGAATGTT--AACAATGT-TTATC--ACTGCTT-G--AA-TG-A-TTTTGATAACGATTTTTGTTT-AAAACAATCATAAAC-TTT-AAAA--C-GAAGGT--TTGTTTT-TCCC------G-T-TAT----CTTTT----C-TGG------C--AT-AAAAAAATGA-----A-------CCC-GAAAAAGAAA-GA-GT----GAAAAGGGGAGTTTT-TCAC--AAA-ATGTGTGT--TTTCCT-ATTCATTGCTAATTTTTT-------G-CCAAAAA--A-TCTCGTTTGATGAGTGGA-A-GT-AGCTAAACGG-GGGGTAC-----C--AACAATGTTATTTATTGTCA-TGTTTTGT----------------GCGGAAT---GAA-------TTATTT---TTCCTA-TGG-AGAGTT-AT---TCCA-TTGG-AATTT------T
gi|19 : actgaataaaA-AA--A---AAG-TTTA-GCAACAA--A--------AGGT--TAAA---AAATTAT---A-TACGC-TTT-TCAGAGGC-AAAATATT--AGCA-TAT-T--ATTCACT-CTTAG--AA-TG-A-TTTTGATCACGATTTTCATTT-GAAACAACCATCAAC-TTTAAAAA--C-GAAGCA--TTGCTTT-TCCT------ATT-TGT----CTTTC------TGG------C--ATAGAAAAAATGA-----T-------------AGGGAA-------------AAAAAGTGA------------AAA-ATGTGTGC--TTTCCT-ATTCATTGCAAA-TTTTT-------G-TCAAAAA--A-TCTCGTTTGATGAG-GGA-ATGT-TGCT-AACTG-GGGATACAAAAAA--AAAAATA-TATTTAT--TCA-
gi|30 : ctgagtaA-AA--A---AAG-TTTA-GCAACAA--A--------GG-T--TAAA----------TATAATACGC-TTT-TCAGAGGCAAAAATATA--TATAGCATATTATC--ACT-CTTAG--AA-
gi|43 : tgagtaaA-AA--A---AAG-TTTA-GCAACCA--A--------AGGT--TGAA---AAATTATatgattttttgatgaccggatttt
gi|44 : tgattaA-AA--A---AAG-TTTA-GCAACAA--A--------ACGT--TGAA---AAAa
gi|42 : tactgagtaA-AA--A---AAG-TTTA-GCAACAA--A--------AG-T--TAAA--------ATTATA-TACTC-TTT-T
gi|18 : ataaatgagta-AG--A---AAG-TTTA-GCAACAA--ATAAAATTTAAATGTTGAA---AAATTAT------ACGC-TTT-TCAGAGGT-AAACTAA---AACA-TAT-CTAAC---CT-CTTAA--AAATG-A-TTTTGATGACGATTT-CGTTT-AAAACAACCATAAACATTT-AAAGATCAGAAAGA--TTGTTTTATCCT------G-TGTGTACAGTTTTT----ACCAG------C--AT-AAAAGATTGATAACGA-------CCCGGAAAAGAAGATGA-GCTCCAGACAAGGGGGGTTTT-CAACAAAAATGTGGGTGT--TTTCCTAATTCATTGCTAA-TTCTTTAAGCTCA-CGGAAAA--ATTCTCATTTGACGAGTGACAA-GT-T
gi|39 : -AA--A---ACG-TTTA-GCACCAA--A--------AGGT--TAAA---AAAT------A-TATGCGCTTCTCAGAAGC-AAAATGTT--TATG-CAT-ATAAT--t
gi|31 : CA-TAT-TTATC--ACT-CTTAA--AA-TG-A-TTTAAACAACTATTTTCGTTT-AAAACAATCGTAAAC-TTT-AAAA--C-GAAGGA--TTCTTTT-TCCT------G-T-TGC----CTCTT------TGG------C--AT-AAAAAA
gi|9 : -TAG------C--AT---AAAAATGA-----G-------CTC-TAAAAGAAAA-AAAGT----GAAAAAGGGAGT------------------------TTTCAT-ATTCATTACTAA-TTTTT-------G-CCAAAAG--A-TTTCGTTTGATGAGTGGA-A-GT-TGCT-AAAAG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-TTTTTT-TTTTTTTTTTTTTTTTGGC-GAAT---GGAC-----ATTTTTT---A-CCTC-TGG-AGAGTT-AT---TCCA-TTGG-AATTT------TCTAACTTC-A---GT-TTT--G-CGAAA-GCGTTC-----TTTGGTTATA--------------------CTG---AAAAAA--T-T---AAGATAGCATTT-AT--CAATGA-A-AA-TTG-AG----TT-T--GAATCACA--GT--G---T--AAGACA-GGCATA---TTT--A---TA---------TGT----TTTTA-ATTT--TTACAA---TTGTGAAA--TAT--TTTCAAGAGGT--C--AA-AAAATGTATCTAAACTTTTTT
gi|21 : tgagtaaaatagaaggttagcaactaaacgttaaaaaatcatatgcgcttttcagaggcaaaatgttaagatatttatcactcttagaatgattttgatgacgattttcgtttaatagaaacgaatgtctggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncAAAA-AA-GT----GAAAAGGGGGGTTTT-TCACAAA---------GT--TTTC-T-ATTCATTGCAAA-TTTTT-------GTCCAAAAACAA-TCTCGTTTGATGAGTGAA-A-AT-TGCT-AACTG-TGAATAC-----C--AAAAATGTTGTTTAT--TCA-TTTTTC-C----------------GG-GAAT---GA---------TTTTT---TT-------------TT-AT---TCCA-TTGG-AATTT------CCAAACTTC-A---AT-TTT--G-TGAAA-ACGCCC-----TTTGGTCATA--------------------CTA---AAAAAAATTAA---A--ATATCATTT-AT--GAATGA-A-AA-TGA-AG----TT-TGCAAC--ACA--GT--G---T--AAGACA-TGCATG---TTT--A---GA---------TTT----TTTGA-ATTgcttggta
gi|24 : A-GA-AT----GAAAAACGGAGTTTT-TGACGAAAA--TGCGTGT--ATTCC--ATTCATTGCTAA-GTTTT-------G-CCAAAAA----TCTCGTTTGATGAGTGGA-A-GC-TGCT-AACCG-GGGATAT-----C--AAAAATGTTTTTTAT--T-A-TTTTAT-T----------------GC-GAAT---GAA-------TTTTTT---TCCCTA-TGG-ATAGTTAAT---TCCA-CTGG-AATTT------TCAAACTTC-A---AT-TT
gi|13 : TTT-TCACAAAAA--TGTAT-T--TTTCCT-ATTCATTGCTAA-TTTTT-------G-CCAAAAA----TCTCGTTAGATGAGTAGA-A-GT-TGTT-AACTG-GGAATAC-----C--AAAACTGTTGTTTAT--TCA-TTTTCT-T----------------TC-G---------------CTTTTTTAAATT--TA-T-------TT-AT---T-TA-TTT----TTT------TCAAACTTC-A---AT-TCT--G-CGAAA-ACGT-------------TATA--------------------CTG---AAAAAA--TTA---A-GATGTCATTT-AT--CAATG--A-AA-ATGTAG----TT-T--GAA--ACACAGT--G---T--GAGAAA-TGCATG---TTC--A---GA---------TTT----TTTGA-ATTT--T-ACAA---TTGTGAAA--TAT--TTTCAAGAGGT--C--AAAAATATGTTGCTAAACCTTTTTCG-CTC
gi|20 : taaagaaaacaaatatactgatttaaaaaagtttagcaacatacgcttttcagaggcaaaatgttatcatatttaccactcttagaatgattttgataacgatttttgtttaaaacaaccatacactttaaacctaaggattgtttttcctgttgccttttctggaa-A-GTATGTT-GAC-G-GAGAT-C-----A--AAAAACATC-TTT----------TTTT-T----------------CC-GAAT---GA-------TTTGTTT---TTCCTAGTGA-GGAG-T-ATCTCTCCA-ATGG-AATTTC-----TAAAACTGTCAAACAT-TTT--GCCGAAACACGCCCAGAGGTGCGGTAATAACGGTCATTACTCTTAACTCCTGAGAGGAATG--TAG---TAGTAGTCATTT-AT--CG--G--A-TA-TAA-AAGATGTTGC--AAAC-ACA--AT--G---C--AA-ACATTGCATCCTTCTT--G---G----------TTT----TTTGT-ATTTAACTACAAT--TTGTGGAAACTAT--TTTCAAGAGttat
gi|14 : ga--AAGAGTTTTATTTAT--TCA-T--TTT-G----------------GG-GGGT-----AT-----GCTTTTT---TTCA-A-TGG-AGAGTT-AT---T-CAGTTAG-AATTT------T---------------------G-CGAAA-ACATCC-----TTTGGGTATA--------------------CCG---AAAAAA--TGA---ATATTG-CATT--AT--CAATG--A-AA-TTTTAG----TT-T--GAA--ACACAGT--G---T--AGGACA-TGCATA---TTT--A---GA---------TTG----TTTGC-ATTT--TCACAA---T--TTACA--TATGTTTTCAAGAGGC--T--A--AAAATGTTGCCAATCATTTTTGT--TCAGTAagtaaa
gi|11 : gagtaaagaaatgcaacaaatggttgaaaagttatatgctcttttcagaggcaaaatgtttacatacatatcatacttagaatggttttgataatgattttcgattgaaacaaccatgaactttatatcgaggagttttttttttcttttttggttgcctttttccggtataaataatatcccgaaaaggaTTTT-G----------------GT-GAAT---GAAT-----TTT-TTT---TTCCTA-TGG-AGAGTT-AT---TCCA-TTGG-AATTT------TCAAACATC-G---AT-TTT--G-CGAAA-ACGTCC-----TTTGGTTATA--------------------CTG---AA---A--TAATT-AAAATGTCATTT-AT--CAATGA-A-AA-TTA-AG----TT-T-------------------------GACA-TGCATG---TTT--A---GA-----------A----TTTTA-ATGT--TTACAA---TTGTGAAA--TGT--TTTCAAGAGGT--T--AA-AAAATGTTGCTAAACTTTTTTGT--TCAGTA
gi|29 : actgagtacaaaaaaattagcaacagaaggttgaaaaattatatacgcttttcagaggcaaatactaacaaatttatcactcagaatgcttttgataatgatttttgttttaaaataaccataaactttaaaacgaaggattgcttcctgttgcctttctagcataaaatattagcccgttaagagaagggtgtgtgttttcctattcattgctaattttttccaaaatttctcgtttgatgagtggaagttgctaactggtgatacaaaaaatgttcgttattcatttttttttttttttttttttttttttttttttttttTTT-T----------------GC-GAAT---GA-T-----TTTTATT---TTCCTA-TGA-AGGGTT-AT---TCCA-TTGG-A------------------------AT-TTT--G-CGAAA-ATGTCC-----ATTAGTAATA--------------------CTG---AA---A--TAATT-CAGATGTCATTT-AT--GAATGA-A-AA-TTA-AA----TT-ta
gi|28 : C-GAAT---GAAT-----TTT---T---TTCCTA-TGG-AGAGTT-AC---CCCA-ATGG-AATTT------TCAAACTTC-A---CT-TTT--G-CGAAA-AC-CCC-----TTTAGTCATA--------------------CT----GAAACA---AATT-AAGATGTCCTTT-AT--GAATG--ACAA-T
gi|34 : GG-AGAGTT-AA---TCCA-TTGG-AATTT------TCAAGCTTC-A---AT-TTT--G-C-AAA-ACGTCC-----TTTGGTTATG--------------------CTG---AAAAAA--TA------------------T--CAATGA-A-AA-TTA-AG----TT-T--GAA--ACA--
gi|27 : gTG--------------------CTG---AAAAAA--TAA---AACACG---------------A--A-AA-TTA-AG----TT-T--GAA--ACACAGT--G---T--AAGACA-TGAATG---TTT--A---GA---------TTT----TTTGA-ATTT--TTACAA---TT-TTCAA--TAT--TTTTAAGAGGT--C--AA-AAATTGTTGCTAAAAAGTTTTTA-CTCAGTAcag
gi|1 : gAACA--TAA---AATATGTCATTT-GTAACATTG--A-A
gi|37 : atttgaccaccagttttcaagaaatttaagtattgtttaaaaagccccttttatcagaaataattaaatcaaagtactgacagtactgatagacggtggcgtggatttggaatagctgagctaaggctgcaaaagtcactaccaatcaatttattgtaataaactgtgtatatacagagtattgagatattgcatgtatatgaaagcaaaagtattattttggcatattttattaaaatgcaattgcaaaaggaacgtaaagtggtgtgcacgttaactaacaaaatggacatttatcagtcatataaattaaagaatgaattgaaagtg--CAATG--A-AAATTA-AG----TT-T--GAAACACA--GT--GTATT--AAGACA-TGCAT----GTT--GCTAAA---------CTT----TTTTgaaatatgttctcctttctatattgtaaattttgaatgatagtcaaccaaaataccttttacatacacgagcagtacagccatcatcgctattataatagcatccagtaaacataaaaaaaactatcagatcatatcacaacaaataaacacaatgcaacgagtttctatcatgtctacagaatgagtcagaggtagttggtgatgggcctgtaaatggtaatattcgcctaaaaactttaatttcaaagttaaaatcttgacacattcatacccacggcatgaaacatcactgggaaaggaagcgcctttccacaatagtggcttccatttcaatatgtgagaattctgagatgtcgctaaatctttgtaactgttcacctatcaaagtaatgtccacaacaaagtctttataaactccaatttcttccacacagacttcgcatgttgtgcctccaactgtccagaaaattctctttccattggctgggtcttctgcatgataaatattaattacgaaaaattgtttacatttaaaatgttgagtgtttggcgaaggatctaccaataataaatcaaacactctactagt
gi|35 : atgttaa--AAGACA-GGCAT----ATTTAA---GA---------TTT----TTTGA-ATGT--TTACAA---TTCTTAAA--TAT--TTTGAAGAGTT--T--A--AAAATGTTGCTAAACTTTtttgct
gi|36 : A---------TTT----TATTGTATTT--TTACAA---TTGTGAAA--TAT--TCTCAAGAGGT--C---ACAAAATGTTGCTAAAGTTTTTTTTACTCAGTactcagt
gi|38 : TTT--TTACAAATTTTGTGAAA--TAT--TTTCAAAAGGT--TTTAAAAAAA-GTTGCTAAACTTGTTTTC-CTCAGTA
gi|19 : TGTTGCTAAACTTTTTTTA-CTCAGta
gi|44 : TGTTGCTAAACTTTTTTTA-CTCAGTAaaaggttaaaaaattatatacgcttttcagaggcaaaatattagcatattattcactcttagaatgattttgatcacgattttcatttgaaacaaccatcaactttaaaaacgaagcattgcttttcctatttgtctttctggcatagaaaaaatgatagggaaaaaaagtgaaaaatgtgtgctttcctattcattgcaaatttttgtcaaaaaatctcgtttgatgagggaatgttgctaactggggatacaaaaaaaaaaatatatttattca
15 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): AATCAAAGTACTGACAGTACTGATAGACGGTGGCGTGAATTCAGAAAAACTAAGCCAAGGCAGCAAAAGTCACTACCAATGGATTTATTGTGTAAACTGTGTATTGACAGAGTATTGACATATTGCATGTTTATAAAAACAAAAGTATTATTTGGTTTTAAAAGAAATTGCAGGAGGAACGTATGATATGGCGTTCAAGTAAACAAAATGGGCAGTCATAATTATAAGGTAAAAATTCAATTGAAAGTGAACATAAAACATATCATTTGTAATATTGTAGTTTACATTTAATACTACCGGTAATTTTAAGTCAGACAGATTCTACTTTGTATATTGTAAAGTATTTTCTGTACAAGGCATCGTCGTTATAGCATTCAGTAATTGAATAACCCCCCAACCCCCTCAAAAAAAAACCCAAACAATCACATCATATCACATAACTGAACAGTAAAATAGAGCAAAGGGAGATCAGCCGCTTAAAATTTAAGCAACAAATATAACGAATATCTATCATGTCTTCAGAATGAACTATCCTAAGAATTAAGTCAATGGTAGTTGGTGATTGGCCTATGGAATGGCAATGTTTGACTACAAATTTCAATATTCGAGAATTCTTAGATGTCACCAAATCTTTGTAACTATTCACGTATCAAAGCAATGTCCACAACAAAGTCTTTATAAGCTCCATTTTTTTCCACAGATTTCGCATGTTGTATCGCCAAAGGAGATTGCCTCCAATGTCCATAAATTTCTCTCTTACACATGATAAATATTAATTACGAAGAACTGTTTACATTTAAAATACTGAGCGAAGGAGTTATATCTACCTTTATTTATTGCAGCCATAGCACAAGTGACGCTCAAACTTGCAAACACTCTACCAGTGGTTCACTCTGTTACCTCACCGGTTTTTTTTTTTATGAATATAACAAGTACAGA
Unaligned ( gi|3 ): ATATATCAAAGTACTGATAATACTGATAGACGATGGCGTGGATTTGGAAAAGCTGAGCTAAGGCTGCAAAAGTCACTACCAATCAATTTATTGTCATAATCTGTGTATATATAGAGTATTGAGATATTGCATGTATATGAAAGCAAAAGTATTATTTTGGCATATTTTATTAAAATGCAATTGCAAAAGGAACGTAAAGTGGCATGCACGTTAACTAACAAAATGGACACTTATCAGTCATATAAATTTTAAAAAAATGAATTGAAAGTCAACATAAAATATATCATTTGTAACATTGAAAATTATGTCCTCCTTTCTATATTGTAAATTTTGAATGATAGTCAACCAAAATACCTTTTACATTTACAAGCAGTACAGGCATCCAGAGAAGTAAGCTTGCATCCCCTGTTGACATCCAGTAAACNNNNNNNNNNNNNNNNNNNNNNNNNAATAAAAAAACAAACAAACAACAAACAAAAAAACTATCAGATCATATTACAACAAATAAATACAATGTAACAGTATCTATCATTCTACAGAAAGTCACATATTGTGATTGTACTAATGGCAATATTCGCCTAAAAACTTTCAAAGTCAAATCTATGCATACCCACGCATTAAGCTTTCACTGAAAGAAGCCTTTCACAATAGTGTTCCATTTCAAATTTTGAATTCTTGAGATGTCCTAAATTTTTAAACACTTCACCTATCAAATAATTATTTCCACAACAAATCTTATTAAACTCCAATCTCTTCCACACAGACTCGCATGCT
Unaligned ( gi|4 ): AATCAAGTACTGATAGACGGTGGCATTGGATATATGGAAAAACATTAAAATATTCATTTATATTTAAAGAAATATGTTCTCCTTTTATATAGATGTAAATTTTGAAGGATAGTATACCAAAATACCCTTTTTACATTTAATGTACAAGCAGTTAGCATCATACGCTATACAGTAAACATTAAAAACAAATCTATCAGATCACATTACAACAAATGAACACTGTAACGAATACCTATCCATGTCTACAGATAACGTATCCAATTAAAGTCAATGGAAGTTGGTGATGGGCCTATAGAATGGCAATTCGACTTTACAAACTTCCAAATTTGACACATACATATGAAGCTTCCCCACGGGAAGCTTCACTGGGAAAAGGAAGTCTATTCCACAATAGTGTCTTCCATTTTCAATATGTCGGAATTTTTGAAGATGAGCTCGCTAAAAATCTTATGTAACTGTTTCATCGTATTCAAAAATAATATTCAAAACAAAGCCTTTATTAAAGTCAATCTCTTCCACACCGACTTCGCACATGTTTAATCTGTGTCGCCAATAGGAGATTGCTTCCAACCTAAGAAAATTATTCTTCCATTGGCTGGGTCTTCTGCATGATGCGATCATTAATTACGAAGAATTGTTTAACATTTAAAATGTTGAGCGTTTCGGCGAAGGAGGCCGAAAGATACCAGTAACAAGCAAACACATCTGCTAGTGAATTCCCTGCGTTGAAATACACCGATTTTTTCGATAAATATA
Unaligned ( gi|5 ): AATCAAAGTACTGACAGTACTGATAGACGGTGGAGTCAACATAAAATATTTCATTTGTAACATTAAAGAAATATGTTCTCCTTTGTATAGTATAAATTTTGAAGAATAGTCTACCAAAATACCTTTTACATTTACATGTACAAGCAGTACAGGCATCATCGCTATAGAGGCATCCAGTAAACATAAAAAAAATCTATCAGATCACATTACAACAAATGAACACTGTAACGAATACCTATCATGTCTACAGAATGAACTATCCCAAGAATTAAGTCAATGGAAGTTGGTGATGGGCCTATGAATGGCAATAACTTCAAATCTTGACACATTCACATCCACGTACGGTATGAAGCTTTACTGGGAAAGGAAAACTTCCACAATAGTGTCTTCCATTTCAATATGTGAGAATTCTGAGATGTCGCATAAAATATTTGTAACTGTTCATGTATCAAAGTAATGACCAAAACAAAGCCTTTATAAAGTCCAATATCTTCCACACCGACTTCGCATGTTGTGTCGCCAATAGGAGATTGCAATTGCCTCCAACTGCCCAGAAAATTCTCTTTCCATTGGTTGGGTCTTCTGCATGATATATATTAATTACGAGAATTGTTTACATGTATATTTAAAATGTTGAGCGTTTGGCGAAGGAGCTACAGTAACAAGCAGACACTCTGCTAGTGATTCCCTGCGTTAACTCGCCGCTTTTTCATAAA
Unaligned ( gi|7 ): GCTAAGCGCCAGCAAATTTTCACCTACCCAATCAATCTTTATGATATAAAACAGGTATATATACAGAGACAAATACTGAGGCTATCTGCATGTTTTATTTATTACTTGTGATATGCACGATACCGCCATTAATGTGGCGTTCATCAGTAAACACATAAGAGCATCTTATCAGCATATAAGTTAAAATAATTCAATTTAAAGCGAATATCAAACATCTCATTCCTGTAACAGTAATAACATTTCAATCACTTACCGGGTCGTAATTACATCAATACAGAAATTTACCTTGTCATATTAAAAGATTTGAAAGAATAGTCAATCAAAACATACTTTTTATTTTATGCTACAAAGCAGCACAGGCCATCATCATTAATCCAGTTTAATGAACTAAAAAAACAGAACAAACAAAAAACCAAAACCCAAACGCTCTTGACCTGAATCACTATTATGTTAACAATAATCTTATCCATGTCTACAGAACATAAAACCTTACTAAAGATTAGTCATATGATAGCTTTGGTACTTGCCTATGATTACCAACTGATCGTACCAACAAACTATCAATGTTTCAGACGCTCACGGAAAGAAAAACCTCTCCACAATACCGTGTCTTTTCCCATTTCAATATTCAGACTTCCTTAGATGCCGCCAAATCAATCGTTAGCCTGTT
Unaligned ( gi|8 ): ATATGTTCTCCTTTGTATAGTGTAAATTTTAAAGGATAGTCTATCAAAATACCTTTTACATTTACATATACAAGCAGTACAGGCATCATCGCTATAGAGGCATCTAGTAAACATAGTAAACATAAAAAATCTATCAGATTACATTACAACAAATGAACACTGTAACGAATATCTATATCATGTCTACAGAATGAAGTATCCCAATAATTAAGTCAATAGAAGTTGGTGATGGGCCTATGAATGGCAATATTCGACTACAAACTTCAAATCTTGACACATTCACACCCACGTACGGTATGAAGCTTCACTGGGAAAGGAAGCCTTTCCACAATAGTGTCTTCCATTTCAGATGTCGCATAAAATCATGTATCAAAGTAATGACCAAAACAAAGCCTTTATAAAGTCCAATCTCTTCCACACCGACTTCGCATGTTGTGTCGCCAATAGGAGATTGCAATTGTCTCCAACTGCTCGGATGATTCTCTGTCCCTTGGCTGGGTAGTCGGCATGATATCTATTGATTACGAAGAATTGTTTATATCTAAAATGTTGAGCGTTTGGCGAAGGAGCTACCAGTAACAAAGCAGACACTCTGCTAGTGATTCCCTGCGTTAACTCACCGTTTTTTCAT
Unaligned ( gi|23 ): AATCAAAGTACTGATAAACGGTGGCTTAGATTTGGAAAAGTCAACATAAAATATTTCATTTGTAACATTGAAGAAATATGTAGTGCTTTGTATAGTGTAAATTTTGAAGGATAGCCTACCAAAATACCTTTTACATTTACATGTACAAGCAGTACAGGCATGATCGCTATAGAGGCATCCAGTAAGCATAAAAAAACCTATCAGATCACATTACAACAAATGAACAC
Unaligned ( gi|25 ): CAAAGTAGCTGGCCTTAAGTATTGATAGACGGTGAGTCAAATTTTACAATATTTTGTCAATGTAGCAATATTTGATATGTTTCTAAATTTGTTGGGTCATAATTGTCTAGAATAGTGATATTAAATTAACATATACGCACAAGCAGACAGCAT
Unaligned ( gi|26 ): AATAACAAAGTACTGGACAGTACTGATAGACGGCTGGCGTTGAATTCAGAAAAAAACTAAGCCAAGGCAGCAAAAGCACTACCAATGGATTTATTGTCGTAAACTGTGAGTTGGTTAAATTGATCAGCATTTTTA
Unaligned ( gi|32 ): TACAGAATGAACTATACTAAGAATTAAGTCAATGGTAGTTGCTGATTGGCCTATGAATGGCAATGATCGACTACAAACTTTCAATGTTCATGACGCTTCAC
Unaligned ( gi|33 ): AAGACAATATTCGCTTGCAAACTTTCAAAGTTCAAATCTTGACACATTCATACCCACGGCATGAAGCTTCACTGGGAACGGAAACCTTTCCACGATAAA
Unaligned ( gi|40 ): TTGGCGAAAGGAGTTACCATTAACAAAGCAGACACTCTGCTAGTGATTCCCTGTGTTAACTCAC
Unaligned ( gi|41 ): TAAATCAAAGTACTGATAGTACTGATAGACGGTGGCGTGGTTGTGAAAAGTTTAGCTAAGGTGG
Unaligned ( gi|45 ): TAATCAAAGTACTGACAATACTGATAGACGGTG
Unaligned ( gi|46 ): GAATTCTGAGATGTCGCTAAATCTTTGTAAC
Alignments
lowQualScore : 111111111111 1111111111111111111 1111111111111111 11111111 1111111111111111 22222222 111111 22 2 1 111111111
lowQualScore : 2 33 666 2 2 4444 9999999999 333 444 2 2 2 444 33 2 2 2 2 333333333333 33 66666 444 33 555 2 1 2 2 33 2 33 2 888888 2 2 6666 2 2 33 6666 2 2 9999999999999999999 2 2 6666 2222222222222222 0 1 2 33 33 2 0 2 555 3 3 555 555 3 5 2 8 2 3 0 3 22222222 3 66 2 2 7777777777777777 2 444 88888888 444 1 2 2 2 444 2 000000 2 555 2 44 3 3 2 3 44 55 3 00 2 555 2 2 3 0 0 55 666 44 3 44 77 222222222 6666 3 77 44 555 33 3 44 999999 4 3 2 7 1
lowQualScore : . .. ... . . .... .......... ... ... . . . ... .. . . . . ............ .. ..... ... .. ... . . . . .. . .. . ...... . . .... . . .. .... . . ................... . . .... ................ . . . .. .. . . . ... . . ... ... . . . . . . . . ........ . .. . . ................ . ... ........ ... . . . . ... . ...... . ... . .. . . . . .. .. . .. . ... . . . . . .. ... .. . .. .. ......... .... . .. .. ... .. . .. ...... . . . . .
lowQualScore : 2 11 111 2 2 7777 7777777777 999 111 4 5 7 777 44 5 7 7 7 777777777777 77 77777 777 77 000 9 4 9 9 99 9 99 9 222222 9 9 1111 9 9 99 1111 9 9 9999999999999999999 9 9 1111 4444444444444444 7 4 9 99 99 9 3 9 444 1 1 444 999 1 3 9 6 9 1 9 1 44444444 2 33 7 9 7777777777777777 7 777 77777777 777 8 9 7 7 777 7 333333 9 000 9 22 1 1 6 3 66 11 8 55 9 000 9 9 1 0 0 00 444 66 3 66 99 333333333 5555 1 88 22 888 88 3 66 888888 0 6 9 9 0
consensus : GTA-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGC-AAAATGT---TAA--CA-TATTTATCACT-CTTAG-AA-T------------GA--TTTT-----GATA---AC--GATTTTC---G-TTTAAAACAACCATAAAC-TTT-AAAA--C-GAAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGC--AT----A-AA-AAAATGA-----G-------CCC-GAAAAGAAAA-GA-GT----GAAAAGGGGA-GTTTT--TCACAAAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---AAAA--A-TCTCGTTTGATGAGTGG-AA-GT-TGCT-AACTG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-TTTTTT----------------GC-GAAT---GAAT-----TTTTTT---TTTCCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCAAACT-TCA---AT-TTT--G-CGAAA-ACGTCCTTTGGTTATACTGAAA-AAA--T-NAAGATGTCATTT-ATCA---AT-GAAA-ATTAAGTT-TGAAA-CACAGT--G---T--AAGACAT-GCATGTT--TA--GA---------TTT----T-TTGAATTT--TTACAA---TT-GTGAA-A--TATTTTCAAGAGGT---C--AA-AAA-ATGTTGCTAAA-CTTTTTTTACTCAGTA
Reference ( family-3185 ) : GTA-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGC-AAAATGT---TAA--CA-TATTTATCACT-CTTAG-AA-T------------GA--TTTT-----GATA---AC--GATTTTC---G-TTTAAAACAACCATAAAC-TTT-AAAA--C-GAAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGC--AT----A-AA-AAAATGA-----G-------CCC-GAAAAGAAAA-GA-GT----GAAAAGGGGA-GTTTT--TCACAAAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---AAAA--A-TCTCGTTTGATGAGTGG-AA-GT-TGCT-AACTG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-TTTTTT----------------GC-GAAT---GAAT-----TTTTTT---TTTCCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCAAACT-TCA---AT-TTT--G-CGAAA-ACGTCCTTTGGTTATACTGAAA-AAA--TAAAAGATGTCATTT-ATCA---AT-GAAA-ATTAAGTT-TG-AA-CACAGT--G---T--AAGACAT-GCATGTT--TA--GA---------TTT----T-TTNAATTT--TTACAA---TT-GTGAA-A--TATTTTCAAGAGGT---C--AA-AAA-ATGTTGCTAAA-CTTTTTTTNCTCAGTA
gi|10 : GTA-AA--A---AAG-TTTC-GCAACAA----A----------AGATTGAA---AAATTATTATA-TA-TGCCTTTCAGAGGC-AAAGTGT---TCA--CA-CATTTAATACT-CTTAG-AA-T-------------A--TCTT-----AATA---GC--AATTTTC---A-TTTAACACAACCATAAAC-TTT-AAAA--C-GAAGGA--TTATATT-TCCT------G-T-TGC----C-TTTT-GTAGC--AC----C-AA-AAAATGA-----G-------CCC-GAAAAGAAAA-GA-GT----GAAAAAGGGA-GTTTT--TCACAAAAAATGT--GTGT--TTTCCT-ATTCATTACTAA-TTGTT---A-C-CA---AAAA--A-GCTCGTTTGATGAGCGG-CA-GT-TGCT-AACTG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-ATTTTT----------------GC-GAGT---GAAT-----TTTTTT---TTTCCTA-TGG-AGAGTT-AT---TGCATTGG-AATTT------TCAAACT-CTA---AT-TTT--G-CGAAA-ACGTCCTATGGTTATACTGGAA-ACA--TAAAAGATGTCATTT-GTCA---AT-G-AA-ATTAAATT-TA-AA--ACAGT--G---T--AAGACAT-GCATCAT--TG--GA---------TTT----T-TTTAATTT--TTACAA---TC-GTGAA-A--TATTTTCAAGAGGT---C--AAGAAA-ATGTTGCTAAA-CTTTTTTTTCTCAGTA
gi|11 : GTACAA--A---AAA-ATTA-GCAACAG----A----------AGGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGC--AAATAC---TAA--CA-AATTTATCACT-C--AG-AA-T------------GC--TTTT-----GATA---AT--GATTTTT---GTTTTAAAATAACCATAAAC-TTT-AAAA--C-GAAGGA--TTG--CT-TCCT------G-T-TGC----C--TTT-CTAGC--AT------AA-AATATTA-----G-------CCC-GTTAAGAGAA-GG-G---------------------------------TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---T-C-CA---AAAT--T-TCTCGTTTGATGAGTGG-AA-GT-TGCT-AACTG-GTGATAC-----A--AAAAATGTTCGTTAT--TCA-T-TTTTTT-----------------------------T-----TTTTTT---TTT
gi|11 : actgaTTTTTTTT--TTT-T-TTTTTG----------------GT-GAAT---GAAT-----TTTTTT---TT-CCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCAAACA-TCG---AT-TTT--G-CGAAA-ACGTCCTTTGGTTATACTGAAA-TAA--TTAAA-ATGTCATTT-ATCA---AT-GAAA-ATTAAGTT-T----------------------GACAT-GCATGTT--TA--GA---------ATT----T-T--AATGT--TTACAA---TT-GTGAA-A--TGTTTTCAAGAGGT---T--AA-AAA-ATGTTGCTAAA-C-TTTTTTGTTCAGTAttttttttttttttttttttttttggtgaatgaatttttttttcctatggagagttattccattggaattttcaaacatcgattttgcgaaaacgtcctttggttatactgaaataattaaaatgtcatttatcaatgaaaattaagtttgacatgcatgtttagaattttaatgtttacaattgtgaaatgttttcaagaggttaaaaaatgttgctaaacttttttgttcagtata
gi|12 : actgagtacaaaaaaattagcaacagaaggttgaaaaattatatacgcttttcagaggcaaatactaacaaatttatcactcagaatgcttttgataatgatttttgttttaaaataaccataaactttaaaacgaaggattgcttcctgttgcctttctagcataaaatattagcccgttaagagaagggtgtgtgttttcctattcattgctaattttttccaaaatttctcgtttgatgagtggaagttgctaactggtgatacaaaaaatgttcgttattcattttttttttttttttttttttttA-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTTAATAAAAATTAT---A----CGCTTTTCAGAGGC-AAAATGT---TAG---------------------G-AA-A------------GA--TTTT-----GATG---AC--GATTTTC---G-TTTGAAACAACCATCAAC-TTT-AAAA--C-GAAGCA--TTGCTTT-TCCT------A-T-TGT----C-TTTT-CTGGC--AT----A-GA-AAAATGA-----G-------C-------GGAAAA-AA-GT----GAAAA---------------------A-TGT--GTGC--TTTCCT-AT-CATTGCAAA-TTTTT---G-T-CA---AAAA----TCTCGTTTGATGAG--G-AATGT-TGCT-A-CTGTGGGATAT-----CTAAAAAATGTT---TAT--TCA-T-TATTTT----------------GC-GAAT---GA--------TTTTT---TTTCCTG-TGG-AGAGTT-AA---TCAATTGG-AATTT------TCAAACT-TCA---AT-TTT--G-CGAAA-TCATCCTTTGGTTATACTGAAA-AAA--T-TAAGATGTCATTT-ATTA---AT-GAAA-ATTAAGCT-TGAAA-CACAGT--G---T--AAGACAT-GCATGTT--TA--GA---------TTTTTTAT-TTTTATTT--TTACAA---TT-GTGAA-A--TATTTTCAAAAGGTAAAA--AA-AAA-AAGTTGCTAAA-CTATTTTTACTCAGTAta
gi|13 : tgaata-ATGTTGCTAAA-CTTTTTTAAATCAGTA
gi|13 : taaagaaaacaaataTA-AA--A---AAG-TTTA-GCAACA---------------------------------------TA-CGCTTTTCAGAGGC-AAAATGT---TAT--CA-TATTTACCACT-CTTAG-AA-T------------GA--TTTT-----GATA---AC--GATTTTT---G-TTTAAAACAACCATACAC-TTT-AAAC--C-TAAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGA--ATTTTCA-CA-AAAATGacgcttttcagaggcaaaatgttatcatatttaccactcttagaatgattttgataacgatttttgtttaaaacaaccatacactttaaacctaaggattgtttttcctgttgccttttctggaattttcacaaaaatgtatttttcctattcattgctaatttttgccaaaaatctcgttagatgagtagaagttgttaactgggaataccaaaactgttgtttattcattttctttcgcttttttaaatttatttatttatttttttcaaacttcaattctgcgaaaacgttatactgaaaaaattaagatgtcatttatcaatgaaaatgtagtttgaaacacagtgtgagaaatgcatgttcagattttttgaattttacaattgtgaaatattttcaagaggtcaaaaatatgttgctaaacctttttcgctcttat
gi|13 : taaagaaaacaaatatactgattTTT--TCACAAAAA-TGT--AT-T--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---AAA---A-TCTCGTTAGATGAGTAG-AA-GT-TGTT-AACTG-GGAATAC-----C--AAAACTGTTGTTTAT--TCA-T-TTTCTT----------------TC-G---------C-----TTTTTTAAATT---TA-T-------TT-AT---T-TATTT----TTT------TCAAACT-TCA---AT-TCT--G-CGAAA-AC--------GTTATACTGAAA-AAA--T-TAAGATGTCATTT-ATCA---AT-GAAA-ATGTAGTT-TGAAA-CACAGT--G---T--GAGAAAT-GCATGTT--CA--GA---------TTT----T-TTGAA-TT--TTACAA---TT-GTGAA-A--TATTTTCAAGAGGT---C--AA-AAATATGTTGCTAAA-CCTTTTTCGCTCtatttttcctattcattgctaatttttgccaaaaatctcgttagatgagtagaagttgttaactgggaataccaaaactgttgtttattcattttctttcgcttttttaaatttatttatttatttttttcaaacttcaattctgcgaaaacgttatactgaaaaaattaagatgtcatttatcaatgaaaatgtagtttgaaacacagtgtgagaaatgcatgttcagattttttgaattttacaattgtgaaatattttcaagaggtcaaaaatatgttgctaaacctttttcgctcttat
gi|14 : taaagaaaacaaatatactgatttaaaaaagtttagcaacatacgcttttcagaggcaaaatgttatcatatttaccactcttagaatgattttgataacgatttttgtttaaaacaaccatacactttaaacctaaggattgtttttcctgttgccttttctggaaGTA-AA--G---AAA-T----GCAACAA----A----------TGGTTGAA---AAGTTAT---A-TG-CTCTTTTCAGAGGC-AAAATGT---TTA--CA-TACATATCATA-CTTAG-AA-T------------GG--TTTT-----GATA---AT--GATTTTC---G-ATTGAAACAACCATGAAC-TTT-ATAT--C-G-AGGAGTTTTTTTT-TTCTTTTTTGG-T-TGC----CTTTTT-CCGGT--AT----A-AATAATAT---------------CCC-GAAAAGGAAA-GA-GT----ttat
gi|14 : ga--AAGAGTTTTATTTAT--TCA-T-TTTGGG----------------GG-GTAT---G----------CTTT---TTTTCAA-TGG-AGAGTT-AT---TCAGTTAG-AATTT------T---------------------G-CGAAA-ACATCCTTTGGGTATACCGAAA-AAA--TGAATATTG-CATT--ATCA---AT-GAAA-TTTTAGTT-TG-AAACACAGT--G---T--AGGACAT-GCATATT--TA--GA---------TTG----T-TTGCATTT--TCACAA---TT--TACATA--TGTTTTCAAGAGG----C--TA-AAA-ATGTTGCCAAT-C-ATTTTTGTTCAGTAtttatttattcattttggggggtatgctttttttcaatggagagttattcagttagaattttgcgaaaacatcctttgggtataccgaaaaaatgaatattgcattatcaatgaaattttagtttgaaacacagtgtaggacatgcatatttagattgtttgcattttcacaatttacatatgttttcaagaggctaaaaatgttgccaatcatttttgttcagta
gi|15 : gagtaaagaaatgcaacaaatggttgaaaagttatatgctcttttcagaggcaaaatgtttacatacatatcatacttagaatggttttgataatgattttcgattgaaacaaccatgaactttatatcgaggagttttttttttcttttttggttgcctttttccggtataaataatatcccgaaaaggaGTA-AA--A---ATG-TTTTTGCAATAA----A----------AGGTTGAA---AAATCAT---A-TA-CGTTTTTCAGAGGC-AAAATGT---TAA--CA-TATGTATTACT-CTTAG-AA-T------------GA--ATTT-----GATA---AT--GATTTTT---G-TTTAAAAC-------AAC-TTT-AAAA--C-TAAGGA--TTTCTTT-TCCC------A-T-TTC----C-TTTT-CTGGC--AT----A-GG-AAAATGG-----G-------TC------AGAAAA-GG-GC----AAAAAAGGGA-GTTTTCCCCCCAAAAA-TGT--ATCTTATTTCCT-ATTTTTTGCAAA-TGTTT---G-C-AA---AAAA--A-ATTCGTTTGATG-------A-GT-TGCC-AAACG-GGGATAC-----A--ACAAATAAAGTTTAT--TCCTT-TTTTTT----------------GC-GGAT---TA---------TTTT---TTTCTTA-TGG-AGAGT---C---TCCA-GGG-AATCTAAACACTCAAAAC-CAA---ATATTT--G-CCAAA-ATATCCT
gi|16 : actgaA-AA--A---AAG-TTTA-ACAACAA----A----------AGATTGAA---AAATTAT---A-TAACGCTTTTCAGAGGC-AGAATGT---TAA--CAATGTTTATCACTGCTT-G-AA-T------------GA--TTTT-----GATA---AC--GATTTTT---G-TTTAAAACAATCATAAAC-TTT-AAAA--C-GAAGGT--TTGTTTT-TCCC------G-T-TAT----C-TTTT-CTGGC--AT----A-AA-AAAATGA-----A-------CCC-GAAAAAGAAA-GA-GT----GAAAAGGGGA-GTTTT--TCAC-AAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAATTTTTT---G-C-CA---AAAA--A-TCTCGTTTGATGAGTGG-AA-GT-AGCTAAACGG-GGGGTAC-----C--AACAATGTTATTTATTGTCA-TGTTTTGT----------------GCGGAAT---GAA-------TTATT---TTTCCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------T
gi|17 : actgaataaaGTA-AAGAA---AAG-TTTA-GCAACAATCAAA----------ATGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGT-AAACTAT---AAA--CA-TATCTATCACT-CTTAG-AA-T------------GA--TTTT-----GATG---AC--GATTTTC---G-TTTAAAACAACCATAAAC-TTT-AAAT--C-GGAAGA--TTGTTTT-TCCT------G-T-TGT----C-TTTT-CTAGC--AT----A-AA-GAAATGA-----G-------CCC-GAAAAGAAGA-GA-GT----GACAAGGGGA-GTTTT--TCACAAAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---CAAA--A-TCTCATTTGACGAGTGG-AA-GT-TGCT-AACTG-GAGATAT-----C--CAAAATGTTGATTAT--TCA-T-TTTTTT----------------
gi|18 : actta-AG--A---AAG-TTTA-GCAACAA----ATAAAATTTAAATGTTGAA---AAATTAT---A----CGCTTTTCAGAGGT-AAACTAA----AA--CA-TATCTAAC-CT-CTTAA-AAAT------------GA--TTTT-----GATG---AC--GATTT-C---G-TTTAAAACAACCATAAACATTT-AAAGATCAGAAAGA--TTGTTTTATCCT------G-TGTGTACAGT-TTTTACCAGC--AT----A-AA-AGATTGATAACGA-------CCCGGAAAAGAAGATGA-GCTCCAGACAAGGGGG-GTTTT--CAACAAAAA-TGTGGGTGT--TTTCCTAATTCATTGCTAA-TTCTTTAAG-CTCACGGAAAA--ATTCTCATTTGACGAGTGACAA-GT-Tttttt
gi|19 : TGTTGCTAAA-CTTTTTTTACTCAGt
gi|19 : A-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTAAA---AAATTAT---A-TA-CGCTTTTCAGAGGC-AAAATAT---TAG--CA-TATTATTCACT-CTTAG-AA-T------------GA--TTTT-----GATC---AC--GATTTTC---A-TTTGAAACAACCATCAAC-TTTAAAAA--C-GAAGCA--TTGCTTT-TCCT------ATT-TGT----C--TTT-CTGGC--AT----AGAA-AAAATGA-----T-------------AGGGAAA------------AAAAGTG--------------AAAAA-TGT--GTGC--TTTCCT-ATTCATTGCAAA-TTTTT---G-T-CA---AAAA--A-TCTCGTTTGATGAG-GG-AATGT-TGCT-AACTG-GGGATACAAAAAA--AAAAATA-TATTTAT--TCA-aaaggttaaaaaattatatacgcttttcagaggcaaaatattagcatattattcactcttagaatgattttgatcacgattttcatttgaaacaaccatcaactttaaaaacgaagcattgcttttcctatttgtctttctggcatagaaaaaatgatagggaaaaaaagtgaaaaatgtgtgctttcctattcattgcaaatttttgtcaaaaaatctcgtttgatgagggaatgttgctaactggggatacaaaaaaaaaaatatatttattca
gi|20 : ctgagtaG-AA-GTATGTT-GAC-G-GAGAT-------C--AAAAA--------ACA-TCT-T-TTTTTT----------------CC-GAAT---GA-------TTTGTT---TTTCCTAGTGA-GGAG-T-ATCTCTCCAATGG-AATTTC-----TAAAACTGTCAAACAT-TTT--GCCGAAACACGCCC
gi|20 : GTCATTT-ATCGGATAT-AAAAGAT---GTTGCA-AA-CACAAT--G---C--AA-ACATTGCATCCT--TCTTGG---------TTT----T-TTGTATTTAACTACAA---TTTGTGGA-AACTATTTTCAAGAGagaggtgcggtaataacggtcattactcttaactcctgagaggaatgtagtagtagtcatttatcggatataaaagatgttgcaaacacaatgcaaacattgcatccttcttggttttttgtatttaactacaatttgtggaaactattttcaagagagtaaa
gi|21 : gaagtatgttgacggagatcaaaaaacatcttttttttccgaatgatttgtttttcctagtgaggagtatctctccaatggaatttctaaaactgtcaaacattttgccgaaacacgcccagaggtgcggtaataacggtcattactcttaactcctgagaggaatgtagtagtaAAAA-AA-GT----GAAAAGGGGG-GTTTT--TCACAAA----------GT--TTTC-T-ATTCATTGCAAA-TTTTT---GTC-CA---AAAACAA-TCTCGTTTGATGAGTGA-AA-AT-TGCT-AACTG-TGAATAC-----C--AAAAATGTTGTTTAT--TCA-T-TTTTCC----------------GG-GAAT---GA---------TTTT---TTT-------------TT-AT---TCCATTGG-AATTT------CCAAACT-TCA---AT-TTT--G-TGAAA-ACGCCCTTTGGTCATACTAAAA-AAAATTAAA--ATATCATTT-ATGA---AT-GAAA-ATGAAGTT-TGCAA-CACAGT--G---T--AAGACAT-GCATGTT--TA--GA---------TTT----T-TTGAATTagtaaa
gi|22 : GTA-AA--A---AAGGTTTA-ACAACAA----A----------AGGTTGAA---AAATTGT---A-TA-CGCCTTCCAAATGC-AAAATGT---GAA--CA-TATTTATCACT-CTTAG-AA-T------------GA--TTTC-----GATA---AC--GATTTTT---G-TTTAATACAGTCATCAAT-TTT-AGAA--C-GGAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGCTTAA----A-AA-AAAAT-A-----GCCCCCCCCCC-TAAA--AAAA-GA-GT----GAAAA--AAATGTTTT--TCAAAAAAA---T--GTGT--TTTCCA-ACTCATTGCTAA-TT
gi|24 : ataccgaA-GA-AT----GAAAAACGGA-GTTTT--TGACGAAAA-TGC--GTGT--ATTCC--ATTCATTGCTAA-GTTTT---G-C-CA---AAA---A-TCTCGTTTGATGAGTGG-AA-GC-TGCT-AACCG-GGGATAT-----C--AAAAATGTTTTTTAT--T-A-T-TTTATT----------------GC-GAAT---GAA-------TTTTT---TTCCCTA-TGG-ATAGTTAAT---TCCACTGG-AATTT------TCAAACT-TCA---AT-TT
gi|27 : TGCTGAAA-AAA--TAAAA-------------CA----C-GAAA-ATTAAGTT-TG-AAACACAGT--G---T--AAGACAT-GAATGTT--TA--GA---------TTT----T-TTGAATTT--TTACAA---TT--TTCA-A--TATTTTTAAGAGGT---C--AA-AAA-TTGTTGCTAAA-AAGTTTTTACTCAGTA
gi|28 : gC-GAAT---GAAT-----TTT------TTTCCTA-TGG-AGAGTT-AC---CCCAATGG-AATTT------TCAAACT-TCA---CT-TTT--G-CGAAA-AC-CCCTTTAGTCATACTGAAACAAA--T-TAAGATGTCCTTT-ATGA---AT-GACA-AT
gi|29 : TTTT----------------GC-GAAT---GA-T-----TTTTAT---TTTCCTA-TGA-AGGGTT-AT---TCCATTGG-AATT-------------------------TT--G-CGAAA-ATGTCCATTAGTAATACTGAAA-TAA--T-TCAGATGTCATTT-ATGA---AT-GAAA-ATTAAATT-
gi|30 : A-AA--A---AAG-TTTA-GCAACAA----A-----------GGTTAAA-------TAT---AATA-CGCTTTTCAGAGGCAAAAATATATATAG--CA-TA-TTATCACT-CTTAGAAA-T------------GATTTTTT-----GATG---ACCGGATTTT
gi|31 : tgagtaa--CA-TATTTATCACT-CTTAA-AA-T------------GA--TTTA-----AACA---AC--TATTTTC---G-TTTAAAACAATCGTAAAC-TTT-AAAA--C-GAAGGA--TTCTTTT-TCCT------G-T-TGC----C-TCTT--TGGC--AT----A-AA-AAA
gi|34 : GG-AGAGTT-AA---TCCATTGG-AATTT------TCAAGCT-TCA---AT-TTT--G-C-AAA-ACGTCCTTTGGTTATGCTGAAA-AAA--TA---------------TCA---AT-GAAA-ATTAAGTT-TGAAA-CACAG
gi|35 : g--AAGACAG-GCATATT--TAA-GA---------TTT----T-TTGAATGT--TTACAA---TT-CTTAA-A--TATTTTGAAGAGTT---T---A-AAA-ATGTTGCTAAA-C----TTTACTCAGT
gi|36 : A---------TTT----TATTGTATTT--TTACAA---TT-GTGAA-A--TATTCTCAAGAGGT---C--AC-AAA-ATGTTGCTAAAGTTTTTTTTACTCAGT
gi|37 : TT-AACA---AT-GAAA-ATTAAGTT-TGAAA-CACAGT--GTATT--AAGACAT-GCATGTTGCTA--AA---------CTT----T-TT---TTT--T
gi|38 : atgTTT--TTACAAATTTT-GTGAA-A--TATTTTCAAAAGGT---TTTAA-AAA-AAGTTGCTAAA-CTTGTTTTCCTCAGTAgct
gi|39 : -AA--A---ACG-TTTA-GCACCAA----A----------AGGTTAAA---AAAT-AT---A-TG-CGCTTCTCAGAAGC-AAAATGT---TTATGCA-TATta
gi|42 : TGTTGCTAAA-CTTTTTTTACTCAaat
gi|42 : ataaaA-AA--A---AAG-TTTA-GCAACAA----A----------A-GTT--A---AAATTAT---A-TA-CTCTTTTaaagttaaaattatatactctttt
gi|43 : ataaatgagtaA-AA--A---AAG-TTTA-GCAACCA----A----------AGGTTGAA---AAATTAT---A-
gi|44 : tgattaTGTTGCTAAA-CTTTTTTTACTCAGTA
gi|44 : A-AA--A---AAG-TTTA-GCAACAA----A----------ACGTTGAA---AAAaaacgttgaaaaa
gi|6 : tactgagtaTA-AA--AC--AAG-TTTA-GCAACAA----A----------AGGTTAAA---AGATTAT---A-TA-CGCTTTTCAGAGGC-AAAATGT---TCG--CA-TATTATTCACT-TTTAG-AA-T------------GA--TTTT-----GATG---AC--GATTTTC---G-TTTGAAACAACCATCAAC-TTT-AAAA--C-GAAGCA--TTGCTTT-TTTT------A-T-TGT----C-TTTT-CTGGC--AT----A-GA-AAAATGA-----G-------TC------GGAAAA-AA-GT----GAAAA---------------------A-TGT--GTGC--TTTTCT-ATTCATTGCAAA-TTTTT---G-T-GA---AAAA--A-TCTCGTTTGATGAG-GG-AATTT-TGCT-AACTG-GGGATACA----A--AAAAATGATGTTTAT--TCA-T-TACTTT----------------GC-GATTGCGGAATTGGAATTTTTT---TTTCCTA-TGGAAGAGTT-AA---TCCATTGGAAATTT------TCAAACT-TCA---AT-TTTTGG-CGAAC-ACATCTTATGGTTATACTGAAA-AAA--ATTAAGAT-TCATTTAATTT---ATGGAAA-ATTAAGCT-TGAAA-CACAGTGGG---TAAAAGACAT-GCATGTT--TA--GAATTTTAAATTTT----T-TTTTGTGT--TTACAA---TT-GTGAA-A--TCTTTTCAA
gi|9 : tgaaGTA-AA--ATAGAAG-GTTA-GCAACTA----A----------ACGTTAAA---AAATCAT---A-TG-CGCTTTTCAGAGGC-AAAATGT---TAA--GA-TATTTATCACT-CTTAG-AA-TGATTTTGATGACGA--TTTTCGTTTAATAGAAAC--GAATGTCTGGA-NNNNNNNNNNNNNNNNNN-NNN-NNNN--N-NNNNNN--NNNNNNN-NNNN------N-N-NNN----N-NNNN-CTAGC--AT----A-AA-AA--TGA-----G-------CTC-TAAAAGAAAA-AAAGT----GAAAAAGGGA-GTTTT-----CA---------------------T-ATTCATTACTAA-TTTTT---G-C-CA---AAAG--A-TTTCGTTTGATGAGTGG-AA-GT-TGCT-AAAAG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-TTTTTTTTTTTTTTTTTTTTTGGC-GAAT---GGAC-----ATTTTT---TA-CCTC-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCTAACT-TCA---GT-TTT--G-CGAAA-GCGTTCTTTGGTTATACTGAAA-AAA--T-TAAGATAGCATTT-ATCA---AT-GAAA-ATTGAGTT-TG-AATCACAGT--G---T--AAGACAG-GCATATT--TA--TA---------TGT----T-TTTAATTT--TTACAA---TT-GTGAA-A--TATTTTCAAGAGGT---C--AA-AAA-ATGTATCTAAA-C-TTTTTTGCTTGGTAtttaatgcgtaaaaagaaggtttgcttcacatgacattttactcaggtatacgtcatcatatacgtataaagtagcagaatgatcatgatatttgtaacaggtgtctaaggtcataataacaaaataattaaacaatgctaaactttttaaaaaataaatttga
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): ATTTGACCACCAGTTTTCAAGAAATTTAAGTATTGTTTAAAAAGCCCCTTTTATCAGAAATAATTAAATCAAAGTACTGACAGTACTGATAGACGGTGGCGTGGATTTGGAATAGCTGAGCTAAGGCTGCAAAAGTCACTACCAATCAATTTATTGTAATAAACTGTGTATATACAGAGTATTGAGATATTGCATGTATATGAAAGCAAAAGTATTATTTTGGCATATTTTATTAAAATGCAATTGCAAAAGGAACGTAAAGTGGTGTGCACGTTAACTAACAAAATGGACATTTATCAGTCATATAAATTAAAGAATGAATTGAAAGTGAACATAAAATATGTCATTTGTAACATTGAAGAAATATGTTCTCCTTTCTATATTGTAAATTTTGAATGATAGTCAACCAAAATACCTTTTACATACACGAGCAGTACAGCCATCATCGCTATTATAATAGCATCCAGTAAACATAAAAAAAACTATCAGATCATATCACAACAAATAAACACAATGCAACGAGTTTCTATCATGTCTACAGAATGAGTCAGAGGTAGTTGGTGATGGGCCTGTAAATGGTAATATTCGCCTAAAAACTTTAATTTCAAAGTTAAAATCTTGACACATTCATACCCACGGCATGAAACATCACTGGGAAAGGAAGCGCCTTTCCACAATAGTGGCTTCCATTTCAATATGTGAGAATTCTGAGATGTCGCTAAATCTTTGTAACTGTTCACCTATCAAAGTAATGTCCACAACAAAGTCTTTATAAACTCCAATTTCTTCCACACAGACTTCGCATGTTGTGCCTCCAACTGTCCAGAAAATTCTCTTTCCATTGGCTGGGTCTTCTGCATGATAAATATTAATTACGAAAAATTGTTTACATTTAAAATGTTGAGTGTTTGGCGAAGGATCTACCAATAATAAATCAAACACTCTACTAGT
Unaligned ( gi|2 ): AATCAAAGTACTGACAGTACTGATAGACGGTGGCGTGAATTCAGAAAAACTAAGCCAAGGCAGCAAAAGTCACTACCAATGGATTTATTGTGTAAACTGTGTATTGACAGAGTATTGACATATTGCATGTTTATAAAAACAAAAGTATTATTTGGTTTTAAAAGAAATTGCAGGAGGAACGTATGATATGGCGTTCAAGTAAACAAAATGGGCAGTCATAATTATAAGGTAAAAATTCAATTGAAAGTGAACATAAAACATATCATTTGTAATATTGTAGTTTACATTTAATACTACCGGTAATTTTAAGTCAGACAGATTCTACTTTGTATATTGTAAAGTATTTTCTGTACAAGGCATCGTCGTTATAGCATTCAGTAATTGAATAACCCCCCAACCCCCTCAAAAAAAAACCCAAACAATCACATCATATCACATAACTGAACAGTAAAATAGAGCAAAGGGAGATCAGCCGCTTAAAATTTAAGCAACAAATATAACGAATATCTATCATGTCTTCAGAATGAACTATCCTAAGAATTAAGTCAATGGTAGTTGGTGATTGGCCTATGGAATGGCAATGTTTGACTACAAATTTCAATATTCGAGAATTCTTAGATGTCACCAAATCTTTGTAACTATTCACGTATCAAAGCAATGTCCACAACAAAGTCTTTATAAGCTCCATTTTTTTCCACAGATTTCGCATGTTGTATCGCCAAAGGAGATTGCCTCCAATGTCCATAAATTTCTCTCTTACACATGATAAATATTAATTACGAAGAACTGTTTACATTTAAAATACTGAGCGAAGGAGTTATATCTACCTTTATTTATTGCAGCCATAGCACAAGTGACGCTCAAACTTGCAAACACTCTACCAGTGGTTCACTCTGTTACCTCACCGGTTTTTTTTTTTATGAATATAACAAGTACAGA
Unaligned ( gi|3 ): ATATATCAAAGTACTGATAATACTGATAGACGATGGCGTGGATTTGGAAAAGCTGAGCTAAGGCTGCAAAAGTCACTACCAATCAATTTATTGTCATAATCTGTGTATATATAGAGTATTGAGATATTGCATGTATATGAAAGCAAAAGTATTATTTTGGCATATTTTATTAAAATGCAATTGCAAAAGGAACGTAAAGTGGCATGCACGTTAACTAACAAAATGGACACTTATCAGTCATATAAATTTTAAAAAAATGAATTGAAAGTCAACATAAAATATATCATTTGTAACATTGAAAATTATGTCCTCCTTTCTATATTGTAAATTTTGAATGATAGTCAACCAAAATACCTTTTACATTTACAAGCAGTACAGGCATCCAGAGAAGTAAGCTTGCATCCCCTGTTGACATCCAGTAAACNNNNNNNNNNNNNNNNNNNNNNNNNAATAAAAAAACAAACAAACAACAAACAAAAAAACTATCAGATCATATTACAACAAATAAATACAATGTAACAGTATCTATCATTCTACAGAAAGTCACATATTGTGATTGTACTAATGGCAATATTCGCCTAAAAACTTTCAAAGTCAAATCTATGCATACCCACGCATTAAGCTTTCACTGAAAGAAGCCTTTCACAATAGTGTTCCATTTCAAATTTTGAATTCTTGAGATGTCCTAAATTTTTAAACACTTCACCTATCAAATAATTATTTCCACAACAAATCTTATTAAACTCCAATCTCTTCCACACAGACTCGCATGCT
Unaligned ( gi|4 ): AATCAAGTACTGATAGACGGTGGCATTGGATATATGGAAAAACATTAAAATATTCATTTATATTTAAAGAAATATGTTCTCCTTTTATATAGATGTAAATTTTGAAGGATAGTATACCAAAATACCCTTTTTACATTTAATGTACAAGCAGTTAGCATCATACGCTATACAGTAAACATTAAAAACAAATCTATCAGATCACATTACAACAAATGAACACTGTAACGAATACCTATCCATGTCTACAGATAACGTATCCAATTAAAGTCAATGGAAGTTGGTGATGGGCCTATAGAATGGCAATTCGACTTTACAAACTTCCAAATTTGACACATACATATGAAGCTTCCCCACGGGAAGCTTCACTGGGAAAAGGAAGTCTATTCCACAATAGTGTCTTCCATTTTCAATATGTCGGAATTTTTGAAGATGAGCTCGCTAAAAATCTTATGTAACTGTTTCATCGTATTCAAAAATAATATTCAAAACAAAGCCTTTATTAAAGTCAATCTCTTCCACACCGACTTCGCACATGTTTAATCTGTGTCGCCAATAGGAGATTGCTTCCAACCTAAGAAAATTATTCTTCCATTGGCTGGGTCTTCTGCATGATGCGATCATTAATTACGAAGAATTGTTTAACATTTAAAATGTTGAGCGTTTCGGCGAAGGAGGCCGAAAGATACCAGTAACAAGCAAACACATCTGCTAGTGAATTCCCTGCGTTGAAATACACCGATTTTTTCGATAAATATA
Unaligned ( gi|5 ): AATCAAAGTACTGACAGTACTGATAGACGGTGGAGTCAACATAAAATATTTCATTTGTAACATTAAAGAAATATGTTCTCCTTTGTATAGTATAAATTTTGAAGAATAGTCTACCAAAATACCTTTTACATTTACATGTACAAGCAGTACAGGCATCATCGCTATAGAGGCATCCAGTAAACATAAAAAAAATCTATCAGATCACATTACAACAAATGAACACTGTAACGAATACCTATCATGTCTACAGAATGAACTATCCCAAGAATTAAGTCAATGGAAGTTGGTGATGGGCCTATGAATGGCAATAACTTCAAATCTTGACACATTCACATCCACGTACGGTATGAAGCTTTACTGGGAAAGGAAAACTTCCACAATAGTGTCTTCCATTTCAATATGTGAGAATTCTGAGATGTCGCATAAAATATTTGTAACTGTTCATGTATCAAAGTAATGACCAAAACAAAGCCTTTATAAAGTCCAATATCTTCCACACCGACTTCGCATGTTGTGTCGCCAATAGGAGATTGCAATTGCCTCCAACTGCCCAGAAAATTCTCTTTCCATTGGTTGGGTCTTCTGCATGATATATATTAATTACGAGAATTGTTTACATGTATATTTAAAATGTTGAGCGTTTGGCGAAGGAGCTACAGTAACAAGCAGACACTCTGCTAGTGATTCCCTGCGTTAACTCGCCGCTTTTTCATAAA
Unaligned ( gi|7 ): GCTAAGCGCCAGCAAATTTTCACCTACCCAATCAATCTTTATGATATAAAACAGGTATATATACAGAGACAAATACTGAGGCTATCTGCATGTTTTATTTATTACTTGTGATATGCACGATACCGCCATTAATGTGGCGTTCATCAGTAAACACATAAGAGCATCTTATCAGCATATAAGTTAAAATAATTCAATTTAAAGCGAATATCAAACATCTCATTCCTGTAACAGTAATAACATTTCAATCACTTACCGGGTCGTAATTACATCAATACAGAAATTTACCTTGTCATATTAAAAGATTTGAAAGAATAGTCAATCAAAACATACTTTTTATTTTATGCTACAAAGCAGCACAGGCCATCATCATTAATCCAGTTTAATGAACTAAAAAAACAGAACAAACAAAAAACCAAAACCCAAACGCTCTTGACCTGAATCACTATTATGTTAACAATAATCTTATCCATGTCTACAGAACATAAAACCTTACTAAAGATTAGTCATATGATAGCTTTGGTACTTGCCTATGATTACCAACTGATCGTACCAACAAACTATCAATGTTTCAGACGCTCACGGAAAGAAAAACCTCTCCACAATACCGTGTCTTTTCCCATTTCAATATTCAGACTTCCTTAGATGCCGCCAAATCAATCGTTAGCCTGTT
Unaligned ( gi|8 ): ATATGTTCTCCTTTGTATAGTGTAAATTTTAAAGGATAGTCTATCAAAATACCTTTTACATTTACATATACAAGCAGTACAGGCATCATCGCTATAGAGGCATCTAGTAAACATAGTAAACATAAAAAATCTATCAGATTACATTACAACAAATGAACACTGTAACGAATATCTATATCATGTCTACAGAATGAAGTATCCCAATAATTAAGTCAATAGAAGTTGGTGATGGGCCTATGAATGGCAATATTCGACTACAAACTTCAAATCTTGACACATTCACACCCACGTACGGTATGAAGCTTCACTGGGAAAGGAAGCCTTTCCACAATAGTGTCTTCCATTTCAGATGTCGCATAAAATCATGTATCAAAGTAATGACCAAAACAAAGCCTTTATAAAGTCCAATCTCTTCCACACCGACTTCGCATGTTGTGTCGCCAATAGGAGATTGCAATTGTCTCCAACTGCTCGGATGATTCTCTGTCCCTTGGCTGGGTAGTCGGCATGATATCTATTGATTACGAAGAATTGTTTATATCTAAAATGTTGAGCGTTTGGCGAAGGAGCTACCAGTAACAAAGCAGACACTCTGCTAGTGATTCCCTGCGTTAACTCACCGTTTTTTCAT
Unaligned ( gi|23 ): AATCAAAGTACTGATAAACGGTGGCTTAGATTTGGAAAAGTCAACATAAAATATTTCATTTGTAACATTGAAGAAATATGTAGTGCTTTGTATAGTGTAAATTTTGAAGGATAGCCTACCAAAATACCTTTTACATTTACATGTACAAGCAGTACAGGCATGATCGCTATAGAGGCATCCAGTAAGCATAAAAAAACCTATCAGATCACATTACAACAAATGAACAC
Unaligned ( gi|25 ): CAAAGTAGCTGGCCTTAAGTATTGATAGACGGTGAGTCAAATTTTACAATATTTTGTCAATGTAGCAATATTTGATATGTTTCTAAATTTGTTGGGTCATAATTGTCTAGAATAGTGATATTAAATTAACATATACGCACAAGCAGACAGCAT
Unaligned ( gi|26 ): AATAACAAAGTACTGGACAGTACTGATAGACGGCTGGCGTTGAATTCAGAAAAAAACTAAGCCAAGGCAGCAAAAGCACTACCAATGGATTTATTGTCGTAAACTGTGAGTTGGTTAAATTGATCAGCATTTTTA
Unaligned ( gi|32 ): TACAGAATGAACTATACTAAGAATTAAGTCAATGGTAGTTGCTGATTGGCCTATGAATGGCAATGATCGACTACAAACTTTCAATGTTCATGACGCTTCAC
Unaligned ( gi|33 ): AAGACAATATTCGCTTGCAAACTTTCAAAGTTCAAATCTTGACACATTCATACCCACGGCATGAAGCTTCACTGGGAACGGAAACCTTTCCACGATAAA
Unaligned ( gi|40 ): TTGGCGAAAGGAGTTACCATTAACAAAGCAGACACTCTGCTAGTGATTCCCTGTGTTAACTCAC
Unaligned ( gi|41 ): TAAATCAAAGTACTGATAGTACTGATAGACGGTGGCGTGGTTGTGAAAAGTTTAGCTAAGGTGG
Unaligned ( gi|45 ): TAATCAAAGTACTGACAATACTGATAGACGGTG
Unaligned ( gi|46 ): GAATTCTGAGATGTCGCTAAATCTTTGTAAC
Alignments
lowQualScore : 111111111111 1111111111111111111 1111111111111111 11111111 1111111111111111 222222222 111111 22222222222222222222 1111111 1111111111 111111
lowQualScore : 2 33 666 2 2 4444 9999999999 333 444 2 2 2 444 33 2 2 2 2 333333333333 33 66666 444 33 555 2 1 2 2 33 2 33 2 888888 2 2 6666 2 2 33 6666 2 2 9999999999999999999 2 2 6666 2222222222222222 0 1 2 33 33 2 0 2 555 3 3 555 555 3 5 2 8 2 3 0 3 22222222 3 66 2 2 7777777777777777 2 444 333333333 444 3 2 2 2 444 2 000000 2 555 2 44 3 3 2 77777 55555555555555555555 3 3 3 3 55 55555 2 555 2 2 55 666 44 3 44 77 3 1111111 2222222222 44 999 0 3 44 555 3 3 000000 3 3 33 2 77 333
lowQualScore : . .. ... . . .... .......... ... ... . . . ... .. . . . . ............ .. ..... ... .. ... . . . . .. . .. . ...... . . .... . . .. .... . . ................... . . .... ................ . . . .. .. . . . ... . . ... ... . . . . . . . . ........ . .. . . ................ . ... ......... ... . . . . ... . ...... . ... . .. . . . ..... .................... . . . . .. ..... . ... . . .. ... .. . .. .. . ....... .......... .. ... . . .. ... . . ...... . . .. . .. ...
lowQualScore : 2 11 111 2 2 7777 7777777777 999 111 4 5 7 777 44 5 7 7 7 777777777777 77 77777 777 77 000 9 4 9 9 99 9 99 9 222222 9 9 1111 9 9 99 1111 9 9 9999999999999999999 9 9 1111 4444444444444444 7 4 9 99 99 9 3 9 444 1 1 444 999 1 3 9 6 9 1 9 1 44444444 2 33 7 9 7777777777777777 7 777 999999999 777 4 9 7 7 777 7 333333 9 000 9 22 1 1 6 77777 00000000000000000000 1 1 1 1 22 88888 9 000 9 9 00 444 66 3 66 99 1 1111111 5555555555 22 222 4 3 66 888 3 3 333333 6 3 11 2 88 999
consensus : GTA-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGC-AAAATGT---TAA--CA-TATTTATCACT-CTTAG-AA-T------------GA--TTTT-----GATA---AC--GATTTTC---G-TTTAAAACAACCATAAAC-TTT-AAAA--C-GAAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGC--AT----A-AA-AAAATGA-----G-------CCC-GAAAAGAAAA-GA-GT----GAAAAGGGGA-GTTTT--TCACAAAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---AAAA--A-TCTCGTTTGATGAGTGG-AA-GT-TGCT-AACTG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-TTTTTT----------------GC-GAAT---GAAT-----TTTTTT---TTTCCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCAAACT-TCA---AT-TTT--G-CGAAA-ACGTCC-----TTTGGTTATA--------------------CT-G-A-AA-AAAT-TAAGATGT---CATTT-ATCA---AT-GAAA-ATTAAGTTTGAAACACAGT--G---T--AAGACA-TGCATGTT--TA--GATTTT-TTGA-----ATT----------T--TTACAA---TTGTGAA-A--TATTTTCAA---GA-G-GT---C--AA-AAA-ATG--TTGCTAAA-C-TTT---TTTTACTCAGTA
Reference ( family-3185 ) : GTA-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGC-AAAATGT---TAA--CA-TATTTATCACT-CTTAG-AA-T------------GA--TTTT-----GATA---AC--GATTTTC---G-TTTAAAACAACCATAAAC-TTT-AAAA--C-GAAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGC--AT----A-AA-AAAATGA-----G-------CCC-GAAAAGAAAA-GA-GT----GAAAAGGGGA-GTTTT--TCACAAAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---AAAA--A-TCTCGTTTGATGAGTGG-AA-GT-TGCT-AACTG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-TTTTTT----------------GC-GAAT---GAAT-----TTTTTT---TTTCCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCAAACT-TCA---AT-TTT--G-CGAAA-ACGTCC-----TTTGGTTATA--------------------CT-G-A-AA-AAAT-NAAGATGT---CATTT-ATCA---AT-GAAA-ATTAAGTTTGAAACACAGT--G---T--AAGACA-TGCATGTT--TA--GATTTT-TTGA-----ATT----------T--TTACAA---TTGTGAA-A--TATTTTCAA---GA-G-GT---C--AA-AAA-ATG--TTGCTAAA-C-TTT---TTTTACTCAGTA
gi|10 : GTA-AA--A---AAG-TTTC-GCAACAA----A----------AGATTGAA---AAATTATTATA-TA-TGCCTTTCAGAGGC-AAAGTGT---TCA--CA-CATTTAATACT-CTTAG-AA-T-------------A--TCTT-----AATA---GC--AATTTTC---A-TTTAACACAACCATAAAC-TTT-AAAA--C-GAAGGA--TTATATT-TCCT------G-T-TGC----C-TTTT-GTAGC--AC----C-AA-AAAATGA-----G-------CCC-GAAAAGAAAA-GA-GT----GAAAAAGGGA-GTTTT--TCACAAAAAATGT--GTGT--TTTCCT-ATTCATTACTAA-TTGTT---A-C-CA---AAAA--A-GCTCGTTTGATGAGCGG-CA-GT-TGCT-AACTG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-ATTTTT----------------GC-GAGT---GAAT-----TTTTTT---TTTCCTA-TGG-AGAGTT-AT---TGCATTGG-AATTT------TCAAACT-CTA---AT-TTT--G-CGAAA-ACGTCC-----TATGGTTATA--------------------CT-G-G-AA-ACATAAAAGATGT---CATTT-GTCA---AT-G-AA-ATTAAATTTAAA--ACAGT--G---T--AAGACA-TGCATCAT--TG--GATTTT-TTTA-----ATT----------T--TTACAA---TCGTGAA-A--TATTTTCAA---GA-G-GT---C--AAGAAA-ATG--TTGCTAAA-C-TTT---TTTTTCTCAGTA
gi|11 : GTACAA--A---AAA-ATTA-GCAACAG----A----------AGGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGC--AAATAC---TAA--CA-AATTTATCACT-C--AG-AA-T------------GC--TTTT-----GATA---AT--GATTTTT---GTTTTAAAATAACCATAAAC-TTT-AAAA--C-GAAGGA--TTG--CT-TCCT------G-T-TGC----C--TTT-CTAGC--AT------AA-AATATTA-----G-------CCC-GTTAAGAGAA-GG-G---------------------------------TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---T-C-CA---AAAT--T-TCTCGTTTGATGAGTGG-AA-GT-TGCT-AACTG-GTGATAC-----A--AAAAATGTTCGTTAT--TCA-T-TTTTTT-----------------------------T-----TTTTTT---TTT
gi|11 : actgaTTTTTTTT--TTT-T-TTTTTG----------------GT-GAAT---GAAT-----TTTTTT---TT-CCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCAAACA-TCG---AT-TTT--G-CGAAA-ACGTCC-----TTTGGTTATA--------------------CT-G-A-AA-TAAT-TAAAATGT---CATTT-ATCA---AT-GAAA-ATTAAGTTT---------------------GACA-TGCATGTT--TA--GAATTT-T--A-----ATG----------T--TTACAA---TTGTGAA-A--TGTTTTCAA---GA-G-GT---T--AA-AAA-ATG--TTGCTAAA-C--TT---TTTTGTTCAGTAttttttttttttttttttttttttggtgaatgaatttttttttcctatggagagttattccattggaattttcaaacatcgattttgcgaaaacgtcctttggttatactgaaataattaaaatgtcatttatcaatgaaaattaagtttgacatgcatgtttagaattttaatgtttacaattgtgaaatgttttcaagaggttaaaaaatgttgctaaacttttttgttcagtata
gi|12 : actgagtacaaaaaaattagcaacagaaggttgaaaaattatatacgcttttcagaggcaaatactaacaaatttatcactcagaatgcttttgataatgatttttgttttaaaataaccataaactttaaaacgaaggattgcttcctgttgcctttctagcataaaatattagcccgttaagagaagggtgtgtgttttcctattcattgctaattttttccaaaatttctcgtttgatgagtggaagttgctaactggtgatacaaaaaatgttcgttattcattttttttttttttttttttttttTG--TTGCTAAA-C-TTT---TTTTATTCAta
gi|12 : A-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTTAATAAAAATTAT---A----CGCTTTTCAGAGGC-AAAATGT---TAG---------------------G-AA-A------------GA--TTTT-----GATG---AC--GATTTTC---G-TTTGAAACAACCATCAAC-TTT-AAAA--C-GAAGCA--TTGCTTT-TCCT------A-T-TGT----C-TTTT-CTGGC--AT----A-GA-AAAATGA-----G-------C-------GGAAAA-AA-GT----GAAAA---------------------A-TGT--GTGC--TTTCCT-AT-CATTGCAAA-TTTTT---G-T-CA---AAAA----TCTCGTTTGATGAG--G-AATGT-TGCT-A-CTGTGGGATAT-----CTAAAAAATGTT---TAT--TCA-T-TATTTT----------------GC-GAAT---GA--------TTTTT---TTTCCTG-TGG-AGAGTT-AA---TCAATTGG-AATTT------TCAAACT-TCA---AT-TTT--G-CGAAA-TCATCC-----TTTGGTTATA--------------------CT-G-A-AA-AAAT-TAAGATGT---CATTT-ATTA---AT-GAAA-ATTAAGCTTGAAACACAGT--G---T--AAGACA-TGCATGTT--TA--GATTTT-TT-ATTTTTATT----------T--TTACAA---TTGTGAA-A--TATTTTCAA---AA-G-GTAAAA--AA-AAA-AAG--TTGCTAAA-C-TAT---TTTTACTCAGTAaaaggtttaataaaaattatacgcttttcagaggcaaaatgttaggaaagattttgatgacgattttcgtttgaaacaaccatcaactttaaaacgaagcattgcttttcctattgtcttttctggcatagaaaaatgagcggaaaaaagtgaaaaatgtgtgctttcctatcattgcaaatttttgtcaaaaatctcgtttgatgaggaatgttgctactgtgggatatctaaaaaatgtttattcattattttgcgaatgattttttttcctgtggagagttaatcaattggaattttcaaacttcaattttgcgaaatcatcctttggttatactgaaaaaattaagatgtcatttattaatgaaaattaagcttgaaacacagtgtaagacatgcatgtttagattttttatttttatttttacaattgtgaaatattttcaaaaggtaaaaaaaaaaagttgctaaactatttttactcagta
gi|13 : tgaata-ATG--TTGCTAAA-C-TTT---TTTAAATCAGTA
gi|13 : taaagaaaacaaataTA-AA--A---AAG-TTTA-GCAACA---------------------------------------TA-CGCTTTTCAGAGGC-AAAATGT---TAT--CA-TATTTACCACT-CTTAG-AA-T------------GA--TTTT-----GATA---AC--GATTTTT---G-TTTAAAACAACCATACAC-TTT-AAAC--C-TAAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGA--ATTTTCA-CA-AAAATGacgcttttcagaggcaaaatgttatcatatttaccactcttagaatgattttgataacgatttttgtttaaaacaaccatacactttaaacctaaggattgtttttcctgttgccttttctggaattttcacaaaaatgtatttttcctattcattgctaatttttgccaaaaatctcgttagatgagtagaagttgttaactgggaataccaaaactgttgtttattcattttctttcgcttttttaaatttatttatttatttttttcaaacttcaattctgcgaaaacgttatactgaaaaaattaagatgtcatttatcaatgaaaatgtagtttgaaacacagtgtgagaaatgcatgttcagattttttgaattttacaattgtgaaatattttcaagaggtcaaaaatatgttgctaaacctttttcgctcttat
gi|13 : taaagaaaacaaatatactgattTTT--TCACAAAAA-TGT--AT-T--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---AAA---A-TCTCGTTAGATGAGTAG-AA-GT-TGTT-AACTG-GGAATAC-----C--AAAACTGTTGTTTAT--TCA-T-TTTCTT----------------TC-G---------C-----TTTTTTAAATT---TA-T-------TT-AT---T-TATTT----TTT------TCAAACT-TCA---AT-TCT--G-CGAAA-AC-------------GTTATA--------------------CT-G-A-AA-AAAT-TAAGATGT---CATTT-ATCA---AT-GAAA-ATGTAGTTTGAAACACAGT--G---T--GAGAAA-TGCATGTT--CA--GATTTT-TTGA-----A-T----------T--TTACAA---TTGTGAA-A--TATTTTCAA---GA-G-GT---C--AA-AAATATG--TTGCTAAA-C-CTT---TTTCGCTCtatttttcctattcattgctaatttttgccaaaaatctcgttagatgagtagaagttgttaactgggaataccaaaactgttgtttattcattttctttcgcttttttaaatttatttatttatttttttcaaacttcaattctgcgaaaacgttatactgaaaaaattaagatgtcatttatcaatgaaaatgtagtttgaaacacagtgtgagaaatgcatgttcagattttttgaattttacaattgtgaaatattttcaagaggtcaaaaatatgttgctaaacctttttcgctcttat
gi|14 : taaagaaaacaaatatactgatttaaaaaagtttagcaacatacgcttttcagaggcaaaatgttatcatatttaccactcttagaatgattttgataacgatttttgtttaaaacaaccatacactttaaacctaaggattgtttttcctgttgccttttctggaaGTA-AA--G---AAA-T----GCAACAA----A----------TGGTTGAA---AAGTTAT---A-TG-CTCTTTTCAGAGGC-AAAATGT---TTA--CA-TACATATCATA-CTTAG-AA-T------------GG--TTTT-----GATA---AT--GATTTTC---G-ATTGAAACAACCATGAAC-TTT-ATAT--C-G-AGGAGTTTTTTTT-TTCTTTTTTGG-T-TGC----CTTTTT-CCGGT--AT----A-AATAATAT---------------CCC-GAAAAGGAAA-GA-GT----ttat
gi|14 : ga--AAGAGTTTTATTTAT--TCA-T-TTTGGG----------------GG-GTAT---G----------CTTT---TTTTCAA-TGG-AGAGTT-AT---TCAGTTAG-AATTT------T---------------------G-CGAAA-ACATCC-----TTTGGGTATA--------------------CC-G-A-AA-AAAT-GAATATTG---CATT--ATCA---AT-GAAA-TTTTAGTTTGAAACACAGT--G---T--AGGACA-TGCATATT--TA--GATTGT-TTGC-----ATT----------T--TCACAA---TT-TACATA--TGTTTTCAA---GA-G-G----C--TA-AAA-ATG--TTGCCAAT-C--AT---TTTTGTTCAGTAtttatttattcattttggggggtatgctttttttcaatggagagttattcagttagaattttgcgaaaacatcctttgggtataccgaaaaaatgaatattgcattatcaatgaaattttagtttgaaacacagtgtaggacatgcatatttagattgtttgcattttcacaatttacatatgttttcaagaggctaaaaatgttgccaatcatttttgttcagta
gi|15 : gagtaaagaaatgcaacaaatggttgaaaagttatatgctcttttcagaggcaaaatgtttacatacatatcatacttagaatggttttgataatgattttcgattgaaacaaccatgaactttatatcgaggagttttttttttcttttttggttgcctttttccggtataaataatatcccgaaaaggaGTA-AA--A---ATG-TTTTTGCAATAA----A----------AGGTTGAA---AAATCAT---A-TA-CGTTTTTCAGAGGC-AAAATGT---TAA--CA-TATGTATTACT-CTTAG-AA-T------------GA--ATTT-----GATA---AT--GATTTTT---G-TTTAAAAC-------AAC-TTT-AAAA--C-TAAGGA--TTTCTTT-TCCC------A-T-TTC----C-TTTT-CTGGC--AT----A-GG-AAAATGG-----G-------TC------AGAAAA-GG-GC----AAAAAAGGGA-GTTTTCCCCCCAAAAA-TGT--ATCTTATTTCCT-ATTTTTTGCAAA-TGTTT---G-C-AA---AAAA--A-ATTCGTTTGATG-------A-GT-TGCC-AAACG-GGGATAC-----A--ACAAATAAAGTTTAT--TCCTT-TTTTTT----------------GC-GGAT---TA---------TTTT---TTTCTTA-TGG-AGAGT---C---TCCA-GGG-AATCTAAACACTCAAAAC-CAA---ATATTT--G-CCAAA-ATATCC-----T
gi|16 : actgaA-AA--A---AAG-TTTA-ACAACAA----A----------AGATTGAA---AAATTAT---A-TAACGCTTTTCAGAGGC-AGAATGT---TAA--CAATGTTTATCACTGCTT-G-AA-T------------GA--TTTT-----GATA---AC--GATTTTT---G-TTTAAAACAATCATAAAC-TTT-AAAA--C-GAAGGT--TTGTTTT-TCCC------G-T-TAT----C-TTTT-CTGGC--AT----A-AA-AAAATGA-----A-------CCC-GAAAAAGAAA-GA-GT----GAAAAGGGGA-GTTTT--TCAC-AAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAATTTTTT---G-C-CA---AAAA--A-TCTCGTTTGATGAGTGG-AA-GT-AGCTAAACGG-GGGGTAC-----C--AACAATGTTATTTATTGTCA-TGTTTTGT----------------GCGGAAT---GAA-------TTATT---TTTCCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------T
gi|17 : actgaataaaGTA-AAGAA---AAG-TTTA-GCAACAATCAAA----------ATGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGT-AAACTAT---AAA--CA-TATCTATCACT-CTTAG-AA-T------------GA--TTTT-----GATG---AC--GATTTTC---G-TTTAAAACAACCATAAAC-TTT-AAAT--C-GGAAGA--TTGTTTT-TCCT------G-T-TGT----C-TTTT-CTAGC--AT----A-AA-GAAATGA-----G-------CCC-GAAAAGAAGA-GA-GT----GACAAGGGGA-GTTTT--TCACAAAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---CAAA--A-TCTCATTTGACGAGTGG-AA-GT-TGCT-AACTG-GAGATAT-----C--CAAAATGTTGATTAT--TCA-T-TTTTTT----------------
gi|18 : actta-AG--A---AAG-TTTA-GCAACAA----ATAAAATTTAAATGTTGAA---AAATTAT---A----CGCTTTTCAGAGGT-AAACTAA----AA--CA-TATCTAAC-CT-CTTAA-AAAT------------GA--TTTT-----GATG---AC--GATTT-C---G-TTTAAAACAACCATAAACATTT-AAAGATCAGAAAGA--TTGTTTTATCCT------G-TGTGTACAGT-TTTTACCAGC--AT----A-AA-AGATTGATAACGA-------CCCGGAAAAGAAGATGA-GCTCCAGACAAGGGGG-GTTTT--CAACAAAAA-TGTGGGTGT--TTTCCTAATTCATTGCTAA-TTCTTTAAG-CTCACGGAAAA--ATTCTCATTTGACGAGTGACAA-GT-Tttttt
gi|19 : TG--TTGCTAAA-C-TTT---TTTTACTCAGt
gi|19 : A-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTAAA---AAATTAT---A-TA-CGCTTTTCAGAGGC-AAAATAT---TAG--CA-TATTATTCACT-CTTAG-AA-T------------GA--TTTT-----GATC---AC--GATTTTC---A-TTTGAAACAACCATCAAC-TTTAAAAA--C-GAAGCA--TTGCTTT-TCCT------ATT-TGT----C--TTT-CTGGC--AT----AGAA-AAAATGA-----T-------------AGGGAAA------------AAAAGTG--------------AAAAA-TGT--GTGC--TTTCCT-ATTCATTGCAAA-TTTTT---G-T-CA---AAAA--A-TCTCGTTTGATGAG-GG-AATGT-TGCT-AACTG-GGGATACAAAAAA--AAAAATA-TATTTAT--TCA-aaaggttaaaaaattatatacgcttttcagaggcaaaatattagcatattattcactcttagaatgattttgatcacgattttcatttgaaacaaccatcaactttaaaaacgaagcattgcttttcctatttgtctttctggcatagaaaaaatgatagggaaaaaaagtgaaaaatgtgtgctttcctattcattgcaaatttttgtcaaaaaatctcgtttgatgagggaatgttgctaactggggatacaaaaaaaaaaatatatttattca
gi|20 : ctgagtaG-AA-GTATGTT-GAC-G-GAGAT-------C--AAAAA--------ACA-TCT-T-TTTTTT----------------CC-GAAT---GA-------TTTGTT---TTTCCTAGTGA-GGAG-T-ATCTCTCCAATGG-AATTTC-----TAAAACTGTCAAACAT-TTT--GCCGAAACACGCCCAGAGGTGCGGTAATAACGGTCATTACTCTTAACTCCT-G-AGAG-GAAT-GTAGTAGTAGTCATTT-ATCGGATAT-AAAAGAT---GTTGCAAACACAAT--G---C--AA-ACATTGCATCCT--TCTTGGTTTT-TTGT-----ATT----------TAACTACAAT--TTGTGGA-AACTATTTTCAA---GA-G-
gi|21 : AAAA-AA-GT----GAAAAGGGGG-GTTTT--TCACAAA----------GT--TTTC-T-ATTCATTGCAAA-TTTTT---GTC-CA---AAAACAA-TCTCGTTTGATGAGTGA-AA-AT-TGCT-AACTG-TGAATAC-----C--AAAAATGTTGTTTAT--TCA-T-TTTTCC----------------GG-GAAT---G-AT-----TTTTTT-------------------TT-AT---TCCATTGG-AATTT------CCAAACT-TCA---AT-TTT--G-TGAAA-ACGCCC-----TTTGGTCATA--------------------CTAA-A-AA-AAAT-TAAAATAT---CATTT-ATGA---AT-GAAA-ATGAAGTTTGCAACACAGT--G---T--AAGACA-TGCATGTT--TA--GATTTT-TTGA-----ATT----------agtaaa
gi|22 : GTA-AA--A---AAGGTTTA-ACAACAA----A----------AGGTTGAA---AAATTGT---A-TA-CGCCTTCCAAATGC-AAAATGT---GAA--CA-TATTTATCACT-CTTAG-AA-T------------GA--TTTC-----GATA---AC--GATTTTT---G-TTTAATACAGTCATCAAT-TTT-AGAA--C-GGAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGCTTAA----A-AA-AAAAT-A-----GCCCCCCCCCC-TAAA--AAAA-GA-GT----GAAAA--AAATGTTTT--TCAAAAAAA---T--GTGT--TTTCCA-ACTCATTGCTAA-TT
gi|24 : ataccgaA-GA-AT----GAAAAACGGA-GTTTT--TGACGAAAA-TGC--GTGT--ATTCC--ATTCATTGCTAA-GTTTT---G-C-CA---AAA---A-TCTCGTTTGATGAGTGG-AA-GC-TGCT-AACCG-GGGATAT-----C--AAAAATGTTTTTTAT--T-A-T-TTTATT----------------GC-GAAT---GAA-------TTTTT---TTCCCTA-TGG-ATAGTTAAT---TCCACTGG-AATTT------TCAAACT-TCA---AT-TT
gi|27 : TG--------------------CT-G-A-AA-AAAT-AAAA---------------CA----C-GAAA-ATTAAGTTTGAAACACAGT--G---T--AAGACA-TGAATGTT--TA--GATTTT-TTGA-----ATT----------T--TTACAA---TT-TTCA-A--TATTTTTAA---GA-G-GT---C--AA-AAA-TTG--TTGCTAAA-A-AGT---TTTTACTCAGTA
gi|28 : gC-GAAT---GAAT-----TTT------TTTCCTA-TGG-AGAGTT-AC---CCCAATGG-AATTT------TCAAACT-TCA---CT-TTT--G-CGAAA-AC-CCC-----TTTAGTCATA--------------------CT-G-A-AACAAAT-TAAGATGT---CCTTT-ATGA---AT-GACA-AT
gi|29 : TTTT----------------GC-GAAT---GA-T-----TTTTAT---TTTCCTA-TGA-AGGGTT-AT---TCCATTGG-AATT-------------------------TT--G-CGAAA-ATGTCC-----ATTAGTAATA--------------------CT-G-A-AA-TAAT-TCAGATGT---CATTT-ATGA---AT-GAAA-ATTAAATT
gi|30 : TG--TTGCTAAA-CTTTT---TTTTACTCA
gi|30 : A-AA--A---AAG-TTTA-GCAACAA----A-----------GGTTAAA-------TAT---AATA-CGCTTTTCAGAGGCAAAAATATATATAG--CA-TA-TTATCACT-CTTAGAAA-T------------GATTTTTT-----GATG---ACCGGATTTTaaggttaaatataatacgcttttcagaggcaaaaatatatatagcatattatcactcttagaaatgattttttgatgaccggatttt
gi|31 : tgagtaa--CA-TATTTATCACT-CTTAA-AA-T------------GA--TTTA-----AACA---AC--TATTTTC---G-TTTAAAACAATCGTAAAC-TTT-AAAA--C-GAAGGA--TTCTTTT-TCCT------G-T-TGC----C-TCTT--TGGC--AT----A-AA-AAA
gi|34 : GG-AGAGTT-AA---TCCATTGG-AATTT------TCAAGCT-TCA---AT-TTT--G-C-AAA-ACGTCC-----TTTGGTTATG--------------------CT-G-A-AA-AAA-----------------T-ATCA---AT-GAAA-ATTAAGTTTGAAACACAG
gi|35 : g--AAGACA-GGCATATT--TAA-GATTTT-TTGA-----ATG----------T--TTACAA---TTCTTAA-A--TATTTTGAA---GA-G-TT---T---A-AAA-ATG--TTGCTAAA-C--------TTTACTCAGT
gi|36 : ATTTTATTGT-----ATT----------T--TTACAA---TTGTGAA-A--TATTCTCAA---GA-G-GT---C--AC-AAA-ATG--TTGCTAAAGT-TTT---TTTTACTCAGT
gi|37 : TT-AACA---AT-GAAA-ATTAAGTTTGAAACACAGT--GTATT--AAGACA-TGCATGTTGCTA--AACTTT-TT--------TT----------T--T
gi|38 : atgTT----------T--TTACAAATTTTGTGAA-A--TATTTTCAA---AA-G-GT---TTTAA-AAA-AAG--TTGCTAAA-C-TTG---TTTTCCTCAGTAgct
gi|39 : -AA--A---ACG-TTTA-GCACCAA----A----------AGGTTAAA---AAAT-AT---A-TG-CGCTTCTCAGAAGC-AAAATGT---TTATGCA-TATta
gi|42 : TG--TTGCTAAA-C-TTT---TTTTACTCAaat
gi|42 : ataaaA-AA--A---AAG-TTTA-GCAACAA----A----------A-GTT--A---AAATTAT---A-TA-CTCTTTTaaagttaaaattatatactctttt
gi|43 : ataaatgagtaG--TTGCTAAA-C-TTT---TTTTAATCA
gi|43 : A-AA--A---AAG-TTTA-GCAACCA----A----------AGGTTGAA---AAATTAT---A-caaaggttgaaaaattata
gi|44 : tgattaTG--TTGCTAAA-C-TTT---TTTTACTCAGTA
gi|44 : A-AA--A---AAG-TTTA-GCAACAA----A----------ACGTTGAA---AAAaaacgttgaaaaa
gi|6 : tactgagtaTA-AA--AC--AAG-TTTA-GCAACAA----A----------AGGTTAAA---AGATTAT---A-TA-CGCTTTTCAGAGGC-AAAATGT---TCG--CA-TATTATTCACT-TTTAG-AA-T------------GA--TTTT-----GATG---AC--GATTTTC---G-TTTGAAACAACCATCAAC-TTT-AAAA--C-GAAGCA--TTGCTTT-TTTT------A-T-TGT----C-TTTT-CTGGC--AT----A-GA-AAAATGA-----G-------TC------GGAAAA-AA-GT----GAAAA---------------------A-TGT--GTGC--TTTTCT-ATTCATTGCAAA-TTTTT---G-T-GA---AAAA--A-TCTCGTTTGATGAG-GG-AATTT-TGCT-AACTG-GGGATACA----A--AAAAATGATGTTTAT--TCA-T-TACTTT----------------GC-GATTGCGGAATTGGAATTTTTT---TTTCCTA-TGGAAGAGTT-AA---TCCATTGGAAATTT------TCAAACT-TCA---AT-TTTTGG-CGAAC-ACATCT-----TATGGTTATA--------------------CT-GAA-AA-AAAT-TAAGAT-T---CATTTAATTT---ATGGAAA-ATTAAGCTTGAAACACAGTGGG---TAAAAGACA-TGCATGTT--TA--GA-ATT-TTAA-----ATTTTTTTTTGTGT--TTACAA---TTGTGAA-A--TCTTTTCAATTTAATGCGT---A--AA-AAG-AAGGTTTGCTTCA-C-ATGACATTTTACTCAG
gi|9 : tgaaGTA-AA--ATAGAAG-GTTA-GCAACTA----A----------ACGTTAAA---AAATCAT---A-TG-CGCTTTTCAGAGGC-AAAATGT---TAA--GA-TATTTATCACT-CTTAG-AA-TGATTTTGATGACGA--TTTTCGTTTAATAGAAAC--GAATGTCTGGA-NNNNNNNNNNNNNNNNNN-NNN-NNNN--N-NNNNNN--NNNNNNN-NNNN------N-N-NNN----N-NNNN-CTAGC--AT----A-AA-AA--TGA-----G-------CTC-TAAAAGAAAA-AAAGT----GAAAAAGGGA-GTTTT-----CA---------------------T-ATTCATTACTAA-TTTTT---G-C-CA---AAAG--A-TTTCGTTTGATGAGTGG-AA-GT-TGCT-AAAAG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-TTTTTTTTTTTTTTTTTTTTTGGC-GAAT---GGAC-----ATTTTT---TA-CCTC-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCTAACT-TCA---GT-TTT--G-CGAAA-GCGTTC-----TTTGGTTATA--------------------CT-G-A-AA-AAAT-TAAGATAG---CATTT-ATCA---AT-GAAA-ATTGAGTTTGAATCACAGT--G---T--AAGACA-GGCATATT--TA--TATGTT-TTTA-----ATT----------T--TTACAA---TTGTGAA-A--TATTTTCAA---GA-G-GT---C--AA-AAA-ATG--TATCTAAA-C--TT---TTTTGCTTGGTAgtatacgtcatcatatacgtataaagtagcagaatgatcatgatatttgtaacaggtgtctaaggtcataataacaaaataattaaacaatgctaaactttttaaaaaataaatttga
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): ATTTGACCACCAGTTTTCAAGAAATTTAAGTATTGTTTAAAAAGCCCCTTTTATCAGAAATAATTAAATCAAAGTACTGACAGTACTGATAGACGGTGGCGTGGATTTGGAATAGCTGAGCTAAGGCTGCAAAAGTCACTACCAATCAATTTATTGTAATAAACTGTGTATATACAGAGTATTGAGATATTGCATGTATATGAAAGCAAAAGTATTATTTTGGCATATTTTATTAAAATGCAATTGCAAAAGGAACGTAAAGTGGTGTGCACGTTAACTAACAAAATGGACATTTATCAGTCATATAAATTAAAGAATGAATTGAAAGTGAACATAAAATATGTCATTTGTAACATTGAAGAAATATGTTCTCCTTTCTATATTGTAAATTTTGAATGATAGTCAACCAAAATACCTTTTACATACACGAGCAGTACAGCCATCATCGCTATTATAATAGCATCCAGTAAACATAAAAAAAACTATCAGATCATATCACAACAAATAAACACAATGCAACGAGTTTCTATCATGTCTACAGAATGAGTCAGAGGTAGTTGGTGATGGGCCTGTAAATGGTAATATTCGCCTAAAAACTTTAATTTCAAAGTTAAAATCTTGACACATTCATACCCACGGCATGAAACATCACTGGGAAAGGAAGCGCCTTTCCACAATAGTGGCTTCCATTTCAATATGTGAGAATTCTGAGATGTCGCTAAATCTTTGTAACTGTTCACCTATCAAAGTAATGTCCACAACAAAGTCTTTATAAACTCCAATTTCTTCCACACAGACTTCGCATGTTGTGCCTCCAACTGTCCAGAAAATTCTCTTTCCATTGGCTGGGTCTTCTGCATGATAAATATTAATTACGAAAAATTGTTTACATTTAAAATGTTGAGTGTTTGGCGAAGGATCTACCAATAATAAATCAAACACTCTACTAGT
Unaligned ( gi|2 ): AATCAAAGTACTGACAGTACTGATAGACGGTGGCGTGAATTCAGAAAAACTAAGCCAAGGCAGCAAAAGTCACTACCAATGGATTTATTGTGTAAACTGTGTATTGACAGAGTATTGACATATTGCATGTTTATAAAAACAAAAGTATTATTTGGTTTTAAAAGAAATTGCAGGAGGAACGTATGATATGGCGTTCAAGTAAACAAAATGGGCAGTCATAATTATAAGGTAAAAATTCAATTGAAAGTGAACATAAAACATATCATTTGTAATATTGTAGTTTACATTTAATACTACCGGTAATTTTAAGTCAGACAGATTCTACTTTGTATATTGTAAAGTATTTTCTGTACAAGGCATCGTCGTTATAGCATTCAGTAATTGAATAACCCCCCAACCCCCTCAAAAAAAAACCCAAACAATCACATCATATCACATAACTGAACAGTAAAATAGAGCAAAGGGAGATCAGCCGCTTAAAATTTAAGCAACAAATATAACGAATATCTATCATGTCTTCAGAATGAACTATCCTAAGAATTAAGTCAATGGTAGTTGGTGATTGGCCTATGGAATGGCAATGTTTGACTACAAATTTCAATATTCGAGAATTCTTAGATGTCACCAAATCTTTGTAACTATTCACGTATCAAAGCAATGTCCACAACAAAGTCTTTATAAGCTCCATTTTTTTCCACAGATTTCGCATGTTGTATCGCCAAAGGAGATTGCCTCCAATGTCCATAAATTTCTCTCTTACACATGATAAATATTAATTACGAAGAACTGTTTACATTTAAAATACTGAGCGAAGGAGTTATATCTACCTTTATTTATTGCAGCCATAGCACAAGTGACGCTCAAACTTGCAAACACTCTACCAGTGGTTCACTCTGTTACCTCACCGGTTTTTTTTTTTATGAATATAACAAGTACAGA
Unaligned ( gi|3 ): ATATATCAAAGTACTGATAATACTGATAGACGATGGCGTGGATTTGGAAAAGCTGAGCTAAGGCTGCAAAAGTCACTACCAATCAATTTATTGTCATAATCTGTGTATATATAGAGTATTGAGATATTGCATGTATATGAAAGCAAAAGTATTATTTTGGCATATTTTATTAAAATGCAATTGCAAAAGGAACGTAAAGTGGCATGCACGTTAACTAACAAAATGGACACTTATCAGTCATATAAATTTTAAAAAAATGAATTGAAAGTCAACATAAAATATATCATTTGTAACATTGAAAATTATGTCCTCCTTTCTATATTGTAAATTTTGAATGATAGTCAACCAAAATACCTTTTACATTTACAAGCAGTACAGGCATCCAGAGAAGTAAGCTTGCATCCCCTGTTGACATCCAGTAAACNNNNNNNNNNNNNNNNNNNNNNNNNAATAAAAAAACAAACAAACAACAAACAAAAAAACTATCAGATCATATTACAACAAATAAATACAATGTAACAGTATCTATCATTCTACAGAAAGTCACATATTGTGATTGTACTAATGGCAATATTCGCCTAAAAACTTTCAAAGTCAAATCTATGCATACCCACGCATTAAGCTTTCACTGAAAGAAGCCTTTCACAATAGTGTTCCATTTCAAATTTTGAATTCTTGAGATGTCCTAAATTTTTAAACACTTCACCTATCAAATAATTATTTCCACAACAAATCTTATTAAACTCCAATCTCTTCCACACAGACTCGCATGCT
Unaligned ( gi|4 ): AATCAAGTACTGATAGACGGTGGCATTGGATATATGGAAAAACATTAAAATATTCATTTATATTTAAAGAAATATGTTCTCCTTTTATATAGATGTAAATTTTGAAGGATAGTATACCAAAATACCCTTTTTACATTTAATGTACAAGCAGTTAGCATCATACGCTATACAGTAAACATTAAAAACAAATCTATCAGATCACATTACAACAAATGAACACTGTAACGAATACCTATCCATGTCTACAGATAACGTATCCAATTAAAGTCAATGGAAGTTGGTGATGGGCCTATAGAATGGCAATTCGACTTTACAAACTTCCAAATTTGACACATACATATGAAGCTTCCCCACGGGAAGCTTCACTGGGAAAAGGAAGTCTATTCCACAATAGTGTCTTCCATTTTCAATATGTCGGAATTTTTGAAGATGAGCTCGCTAAAAATCTTATGTAACTGTTTCATCGTATTCAAAAATAATATTCAAAACAAAGCCTTTATTAAAGTCAATCTCTTCCACACCGACTTCGCACATGTTTAATCTGTGTCGCCAATAGGAGATTGCTTCCAACCTAAGAAAATTATTCTTCCATTGGCTGGGTCTTCTGCATGATGCGATCATTAATTACGAAGAATTGTTTAACATTTAAAATGTTGAGCGTTTCGGCGAAGGAGGCCGAAAGATACCAGTAACAAGCAAACACATCTGCTAGTGAATTCCCTGCGTTGAAATACACCGATTTTTTCGATAAATATA
Unaligned ( gi|5 ): AATCAAAGTACTGACAGTACTGATAGACGGTGGAGTCAACATAAAATATTTCATTTGTAACATTAAAGAAATATGTTCTCCTTTGTATAGTATAAATTTTGAAGAATAGTCTACCAAAATACCTTTTACATTTACATGTACAAGCAGTACAGGCATCATCGCTATAGAGGCATCCAGTAAACATAAAAAAAATCTATCAGATCACATTACAACAAATGAACACTGTAACGAATACCTATCATGTCTACAGAATGAACTATCCCAAGAATTAAGTCAATGGAAGTTGGTGATGGGCCTATGAATGGCAATAACTTCAAATCTTGACACATTCACATCCACGTACGGTATGAAGCTTTACTGGGAAAGGAAAACTTCCACAATAGTGTCTTCCATTTCAATATGTGAGAATTCTGAGATGTCGCATAAAATATTTGTAACTGTTCATGTATCAAAGTAATGACCAAAACAAAGCCTTTATAAAGTCCAATATCTTCCACACCGACTTCGCATGTTGTGTCGCCAATAGGAGATTGCAATTGCCTCCAACTGCCCAGAAAATTCTCTTTCCATTGGTTGGGTCTTCTGCATGATATATATTAATTACGAGAATTGTTTACATGTATATTTAAAATGTTGAGCGTTTGGCGAAGGAGCTACAGTAACAAGCAGACACTCTGCTAGTGATTCCCTGCGTTAACTCGCCGCTTTTTCATAAA
Unaligned ( gi|7 ): GCTAAGCGCCAGCAAATTTTCACCTACCCAATCAATCTTTATGATATAAAACAGGTATATATACAGAGACAAATACTGAGGCTATCTGCATGTTTTATTTATTACTTGTGATATGCACGATACCGCCATTAATGTGGCGTTCATCAGTAAACACATAAGAGCATCTTATCAGCATATAAGTTAAAATAATTCAATTTAAAGCGAATATCAAACATCTCATTCCTGTAACAGTAATAACATTTCAATCACTTACCGGGTCGTAATTACATCAATACAGAAATTTACCTTGTCATATTAAAAGATTTGAAAGAATAGTCAATCAAAACATACTTTTTATTTTATGCTACAAAGCAGCACAGGCCATCATCATTAATCCAGTTTAATGAACTAAAAAAACAGAACAAACAAAAAACCAAAACCCAAACGCTCTTGACCTGAATCACTATTATGTTAACAATAATCTTATCCATGTCTACAGAACATAAAACCTTACTAAAGATTAGTCATATGATAGCTTTGGTACTTGCCTATGATTACCAACTGATCGTACCAACAAACTATCAATGTTTCAGACGCTCACGGAAAGAAAAACCTCTCCACAATACCGTGTCTTTTCCCATTTCAATATTCAGACTTCCTTAGATGCCGCCAAATCAATCGTTAGCCTGTT
Unaligned ( gi|8 ): ATATGTTCTCCTTTGTATAGTGTAAATTTTAAAGGATAGTCTATCAAAATACCTTTTACATTTACATATACAAGCAGTACAGGCATCATCGCTATAGAGGCATCTAGTAAACATAGTAAACATAAAAAATCTATCAGATTACATTACAACAAATGAACACTGTAACGAATATCTATATCATGTCTACAGAATGAAGTATCCCAATAATTAAGTCAATAGAAGTTGGTGATGGGCCTATGAATGGCAATATTCGACTACAAACTTCAAATCTTGACACATTCACACCCACGTACGGTATGAAGCTTCACTGGGAAAGGAAGCCTTTCCACAATAGTGTCTTCCATTTCAGATGTCGCATAAAATCATGTATCAAAGTAATGACCAAAACAAAGCCTTTATAAAGTCCAATCTCTTCCACACCGACTTCGCATGTTGTGTCGCCAATAGGAGATTGCAATTGTCTCCAACTGCTCGGATGATTCTCTGTCCCTTGGCTGGGTAGTCGGCATGATATCTATTGATTACGAAGAATTGTTTATATCTAAAATGTTGAGCGTTTGGCGAAGGAGCTACCAGTAACAAAGCAGACACTCTGCTAGTGATTCCCTGCGTTAACTCACCGTTTTTTCAT
Unaligned ( gi|23 ): AATCAAAGTACTGATAAACGGTGGCTTAGATTTGGAAAAGTCAACATAAAATATTTCATTTGTAACATTGAAGAAATATGTAGTGCTTTGTATAGTGTAAATTTTGAAGGATAGCCTACCAAAATACCTTTTACATTTACATGTACAAGCAGTACAGGCATGATCGCTATAGAGGCATCCAGTAAGCATAAAAAAACCTATCAGATCACATTACAACAAATGAACAC
Unaligned ( gi|25 ): CAAAGTAGCTGGCCTTAAGTATTGATAGACGGTGAGTCAAATTTTACAATATTTTGTCAATGTAGCAATATTTGATATGTTTCTAAATTTGTTGGGTCATAATTGTCTAGAATAGTGATATTAAATTAACATATACGCACAAGCAGACAGCAT
Unaligned ( gi|26 ): AATAACAAAGTACTGGACAGTACTGATAGACGGCTGGCGTTGAATTCAGAAAAAAACTAAGCCAAGGCAGCAAAAGCACTACCAATGGATTTATTGTCGTAAACTGTGAGTTGGTTAAATTGATCAGCATTTTTA
Unaligned ( gi|32 ): TACAGAATGAACTATACTAAGAATTAAGTCAATGGTAGTTGCTGATTGGCCTATGAATGGCAATGATCGACTACAAACTTTCAATGTTCATGACGCTTCAC
Unaligned ( gi|33 ): AAGACAATATTCGCTTGCAAACTTTCAAAGTTCAAATCTTGACACATTCATACCCACGGCATGAAGCTTCACTGGGAACGGAAACCTTTCCACGATAAA
Unaligned ( gi|40 ): TTGGCGAAAGGAGTTACCATTAACAAAGCAGACACTCTGCTAGTGATTCCCTGTGTTAACTCAC
Unaligned ( gi|41 ): TAAATCAAAGTACTGATAGTACTGATAGACGGTGGCGTGGTTGTGAAAAGTTTAGCTAAGGTGG
Unaligned ( gi|45 ): TAATCAAAGTACTGACAATACTGATAGACGGTG
Unaligned ( gi|46 ): GAATTCTGAGATGTCGCTAAATCTTTGTAAC
Alignments
lowQualScore : 111111111111 1111111111111111111 1111111111111111 11111111 1111111111111111 22222222 111111 1111111 1111111111 111111
lowQualScore : 2 33 666 2 2 4444 9999999999 333 444 2 2 2 444 33 2 2 2 2 333333333333 33 66666 444 33 555 2 1 2 2 33 2 33 2 888888 2 2 6666 2 2 33 6666 2 2 9999999999999999999 2 2 6666 2222222222222222 0 1 2 33 33 2 0 2 555 3 3 555 555 3 5 2 8 2 3 0 3 22222222 3 66 2 2 7777777777777777 2 444 88888888 444 1 2 2 2 444 2 000000 2 555 2 44 3 3 2 3 3 3 44 4 2 555 2 2 55 666 44 3 44 77 3 1111111 2222222222 44 555 33 3 44 555 3 3 000000 3 3 33 2 77 333
lowQualScore : . .. ... . . .... .......... ... ... . . . ... .. . . . . ............ .. ..... ... .. ... . . . . .. . .. . ...... . . .... . . .. .... . . ................... . . .... ................ . . . .. .. . . . ... . . ... ... . . . . . . . . ........ . .. . . ................ . ... ........ ... . . . . ... . ...... . ... . .. . . . . . . .. . . ... . . .. ... .. . .. .. . ....... .......... .. ... .. . .. ... . . ...... . . .. . .. ...
lowQualScore : 2 11 111 2 2 7777 7777777777 999 111 4 5 7 777 44 5 7 7 7 777777777777 77 77777 777 77 000 9 4 9 9 99 9 99 9 222222 9 9 1111 9 9 99 1111 9 9 9999999999999999999 9 9 1111 4444444444444444 7 4 9 99 99 9 3 9 444 1 1 444 999 1 3 9 6 9 1 9 1 44444444 2 33 7 9 7777777777777777 7 777 77777777 777 8 9 7 7 777 7 333333 9 000 9 22 1 1 6 3 3 3 66 0 9 000 9 9 00 444 66 3 66 99 1 1111111 5555555555 22 888 88 3 66 888 3 3 333333 6 3 11 2 88 999
consensus : GTA-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGC-AAAATGT---TAA--CA-TATTTATCACT-CTTAG-AA-T------------GA--TTTT-----GATA---AC--GATTTTC---G-TTTAAAACAACCATAAAC-TTT-AAAA--C-GAAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGC--AT----A-AA-AAAATGA-----G-------CCC-GAAAAGAAAA-GA-GT----GAAAAGGGGA-GTTTT--TCACAAAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---AAAA--A-TCTCGTTTGATGAGTGG-AA-GT-TGCT-AACTG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-TTTTTT----------------GC-GAAT---GAAT-----TTTTTT---TTTCCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCAAACT-TCA---AT-TTT--G-CGAAA-ACGTCCTTTGGTTATACTG-AAA-AAA-T-TAAGATGTCATTT-ATCA---AT-GAAA-ATTAAGTTTGAAACACAGT--G---T--AAGACAT-GCATGTT--TA--GATTTT-TTGA-----ATT----------T--TTACAA---TT-GTGAA-A--TATTTTCAA---GA-G-GT---C--AA-AAA-ATG--TTGCTAAA-C-TTT---TTTTACTCAGTA
Reference ( family-3185 ) : GTA-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGC-AAAATGT---TAA--CA-TATTTATCACT-CTTAG-AA-T------------GA--TTTT-----GATA---AC--GATTTTC---G-TTTAAAACAACCATAAAC-TTT-AAAA--C-GAAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGC--AT----A-AA-AAAATGA-----G-------CCC-GAAAAGAAAA-GA-GT----GAAAAGGGGA-GTTTT--TCACAAAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---AAAA--A-TCTCGTTTGATGAGTGG-AA-GT-TGCT-AACTG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-TTTTTT----------------GC-GAAT---GAAT-----TTTTTT---TTTCCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCAAACT-TCA---AT-TTT--G-CGAAA-ACGTCCTTTGGTTATACTG-AAA-AAA-T-TAAGATGTCATTT-ATCA---AT-GAAA-ATTAAGTTTGAAACACAGT--G---T--AAGACAT-GCATGTT--TA--GATTTT-TTGA-----ATT----------T--TTACAA---TT-GTGAA-A--TATTTTCAA---GA-G-GT---C--AA-AAA-ATG--TTGCTAAA-C-TTT---TTTTACTCAGTA
gi|10 : GTA-AA--A---AAG-TTTC-GCAACAA----A----------AGATTGAA---AAATTATTATA-TA-TGCCTTTCAGAGGC-AAAGTGT---TCA--CA-CATTTAATACT-CTTAG-AA-T-------------A--TCTT-----AATA---GC--AATTTTC---A-TTTAACACAACCATAAAC-TTT-AAAA--C-GAAGGA--TTATATT-TCCT------G-T-TGC----C-TTTT-GTAGC--AC----C-AA-AAAATGA-----G-------CCC-GAAAAGAAAA-GA-GT----GAAAAAGGGA-GTTTT--TCACAAAAAATGT--GTGT--TTTCCT-ATTCATTACTAA-TTGTT---A-C-CA---AAAA--A-GCTCGTTTGATGAGCGG-CA-GT-TGCT-AACTG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-ATTTTT----------------GC-GAGT---GAAT-----TTTTTT---TTTCCTA-TGG-AGAGTT-AT---TGCATTGG-AATTT------TCAAACT-CTA---AT-TTT--G-CGAAA-ACGTCCTATGGTTATACTG-GAA-ACA-TAAAAGATGTCATTT-GTCA---AT-G-AA-ATTAAATTTAAA--ACAGT--G---T--AAGACAT-GCATCAT--TG--GATTTT-TTTA-----ATT----------T--TTACAA---TC-GTGAA-A--TATTTTCAA---GA-G-GT---C--AAGAAA-ATG--TTGCTAAA-C-TTT---TTTTTCTCAGTA
gi|11 : GTACAA--A---AAA-ATTA-GCAACAG----A----------AGGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGC--AAATAC---TAA--CA-AATTTATCACT-C--AG-AA-T------------GC--TTTT-----GATA---AT--GATTTTT---GTTTTAAAATAACCATAAAC-TTT-AAAA--C-GAAGGA--TTG--CT-TCCT------G-T-TGC----C--TTT-CTAGC--AT------AA-AATATTA-----G-------CCC-GTTAAGAGAA-GG-G---------------------------------TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---T-C-CA---AAAT--T-TCTCGTTTGATGAGTGG-AA-GT-TGCT-AACTG-GTGATAC-----A--AAAAATGTTCGTTAT--TCA-T-TTTTTT-----------------------------T-----TTTTTT---TTT
gi|11 : actgaTTTTTTTT--TTT-T-TTTTTG----------------GT-GAAT---GAAT-----TTTTTT---TT-CCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCAAACA-TCG---AT-TTT--G-CGAAA-ACGTCCTTTGGTTATACTG-AAA-TAA-T-TAAAATGTCATTT-ATCA---AT-GAAA-ATTAAGTTT---------------------GACAT-GCATGTT--TA--GAATTT-T--A-----ATG----------T--TTACAA---TT-GTGAA-A--TGTTTTCAA---GA-G-GT---T--AA-AAA-ATG--TTGCTAAA-C--TT---TTTTGTTCAGTAttttttttttttttttttttttttggtgaatgaatttttttttcctatggagagttattccattggaattttcaaacatcgattttgcgaaaacgtcctttggttatactgaaataattaaaatgtcatttatcaatgaaaattaagtttgacatgcatgtttagaattttaatgtttacaattgtgaaatgttttcaagaggttaaaaaatgttgctaaacttttttgttcagtata
gi|12 : actgagtacaaaaaaattagcaacagaaggttgaaaaattatatacgcttttcagaggcaaatactaacaaatttatcactcagaatgcttttgataatgatttttgttttaaaataaccataaactttaaaacgaaggattgcttcctgttgcctttctagcataaaatattagcccgttaagagaagggtgtgtgttttcctattcattgctaattttttccaaaatttctcgtttgatgagtggaagttgctaactggtgatacaaaaaatgttcgttattcattttttttttttttttttttttttTG--TTGCTAAA-C-TTT---TTTTATTCAta
gi|12 : A-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTTAATAAAAATTAT---A----CGCTTTTCAGAGGC-AAAATGT---TAG---------------------G-AA-A------------GA--TTTT-----GATG---AC--GATTTTC---G-TTTGAAACAACCATCAAC-TTT-AAAA--C-GAAGCA--TTGCTTT-TCCT------A-T-TGT----C-TTTT-CTGGC--AT----A-GA-AAAATGA-----G-------C-------GGAAAA-AA-GT----GAAAA---------------------A-TGT--GTGC--TTTCCT-AT-CATTGCAAA-TTTTT---G-T-CA---AAAA----TCTCGTTTGATGAG--G-AATGT-TGCT-A-CTGTGGGATAT-----CTAAAAAATGTT---TAT--TCA-T-TATTTT----------------GC-GAAT---GA--------TTTTT---TTTCCTG-TGG-AGAGTT-AA---TCAATTGG-AATTT------TCAAACT-TCA---AT-TTT--G-CGAAA-TCATCCTTTGGTTATACTG-AAA-AAA-T-TAAGATGTCATTT-ATTA---AT-GAAA-ATTAAGCTTGAAACACAGT--G---T--AAGACAT-GCATGTT--TA--GATTTT-TT-ATTTTTATT----------T--TTACAA---TT-GTGAA-A--TATTTTCAA---AA-G-GTAAAA--AA-AAA-AAG--TTGCTAAA-C-TAT---TTTTACTCAGTAaaaggtttaataaaaattatacgcttttcagaggcaaaatgttaggaaagattttgatgacgattttcgtttgaaacaaccatcaactttaaaacgaagcattgcttttcctattgtcttttctggcatagaaaaatgagcggaaaaaagtgaaaaatgtgtgctttcctatcattgcaaatttttgtcaaaaatctcgtttgatgaggaatgttgctactgtgggatatctaaaaaatgtttattcattattttgcgaatgattttttttcctgtggagagttaatcaattggaattttcaaacttcaattttgcgaaatcatcctttggttatactgaaaaaattaagatgtcatttattaatgaaaattaagcttgaaacacagtgtaagacatgcatgtttagattttttatttttatttttacaattgtgaaatattttcaaaaggtaaaaaaaaaaagttgctaaactatttttactcagta
gi|13 : tgaata-ATG--TTGCTAAA-C-TTT---TTTAAATCAGTA
gi|13 : taaagaaaacaaataTA-AA--A---AAG-TTTA-GCAACA---------------------------------------TA-CGCTTTTCAGAGGC-AAAATGT---TAT--CA-TATTTACCACT-CTTAG-AA-T------------GA--TTTT-----GATA---AC--GATTTTT---G-TTTAAAACAACCATACAC-TTT-AAAC--C-TAAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGA--ATTTTCA-CA-AAAATGacgcttttcagaggcaaaatgttatcatatttaccactcttagaatgattttgataacgatttttgtttaaaacaaccatacactttaaacctaaggattgtttttcctgttgccttttctggaattttcacaaaaatgtatttttcctattcattgctaatttttgccaaaaatctcgttagatgagtagaagttgttaactgggaataccaaaactgttgtttattcattttctttcgcttttttaaatttatttatttatttttttcaaacttcaattctgcgaaaacgttatactgaaaaaattaagatgtcatttatcaatgaaaatgtagtttgaaacacagtgtgagaaatgcatgttcagattttttgaattttacaattgtgaaatattttcaagaggtcaaaaatatgttgctaaacctttttcgctcttat
gi|13 : taaagaaaacaaatatactgattTTT--TCACAAAAA-TGT--AT-T--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---AAA---A-TCTCGTTAGATGAGTAG-AA-GT-TGTT-AACTG-GGAATAC-----C--AAAACTGTTGTTTAT--TCA-T-TTTCTT----------------TC-G---------C-----TTTTTTAAATT---TA-T-------TT-AT---T-TATTT----TTT------TCAAACT-TCA---AT-TCT--G-CGAAA-AC--------GTTATACTG-AAA-AAA-T-TAAGATGTCATTT-ATCA---AT-GAAA-ATGTAGTTTGAAACACAGT--G---T--GAGAAAT-GCATGTT--CA--GATTTT-TTGA-----A-T----------T--TTACAA---TT-GTGAA-A--TATTTTCAA---GA-G-GT---C--AA-AAATATG--TTGCTAAA-C-CTT---TTTCGCTCtatttttcctattcattgctaatttttgccaaaaatctcgttagatgagtagaagttgttaactgggaataccaaaactgttgtttattcattttctttcgcttttttaaatttatttatttatttttttcaaacttcaattctgcgaaaacgttatactgaaaaaattaagatgtcatttatcaatgaaaatgtagtttgaaacacagtgtgagaaatgcatgttcagattttttgaattttacaattgtgaaatattttcaagaggtcaaaaatatgttgctaaacctttttcgctcttat
gi|14 : taaagaaaacaaatatactgatttaaaaaagtttagcaacatacgcttttcagaggcaaaatgttatcatatttaccactcttagaatgattttgataacgatttttgtttaaaacaaccatacactttaaacctaaggattgtttttcctgttgccttttctggaaGTA-AA--G---AAA-T----GCAACAA----A----------TGGTTGAA---AAGTTAT---A-TG-CTCTTTTCAGAGGC-AAAATGT---TTA--CA-TACATATCATA-CTTAG-AA-T------------GG--TTTT-----GATA---AT--GATTTTC---G-ATTGAAACAACCATGAAC-TTT-ATAT--C-G-AGGAGTTTTTTTT-TTCTTTTTTGG-T-TGC----CTTTTT-CCGGT--AT----A-AATAATAT---------------CCC-GAAAAGGAAA-GA-GT----ttat
gi|14 : ga--AAGAGTTTTATTTAT--TCA-T-TTTGGG----------------GG-GTAT---G----------CTTT---TTTTCAA-TGG-AGAGTT-AT---TCAGTTAG-AATTT------T---------------------G-CGAAA-ACATCCTTTGGGTATACCG-AAA-AAA-T-GAATATTGCATT--ATCA---AT-GAAA-TTTTAGTTTGAAACACAGT--G---T--AGGACAT-GCATATT--TA--GATTGT-TTGC-----ATT----------T--TCACAA---TT--TACATA--TGTTTTCAA---GA-G-G----C--TA-AAA-ATG--TTGCCAAT-C--AT---TTTTGTTCAGTAtttatttattcattttggggggtatgctttttttcaatggagagttattcagttagaattttgcgaaaacatcctttgggtataccgaaaaaatgaatattgcattatcaatgaaattttagtttgaaacacagtgtaggacatgcatatttagattgtttgcattttcacaatttacatatgttttcaagaggctaaaaatgttgccaatcatttttgttcagta
gi|15 : gagtaaagaaatgcaacaaatggttgaaaagttatatgctcttttcagaggcaaaatgtttacatacatatcatacttagaatggttttgataatgattttcgattgaaacaaccatgaactttatatcgaggagttttttttttcttttttggttgcctttttccggtataaataatatcccgaaaaggaGTA-AA--A---ATG-TTTTTGCAATAA----A----------AGGTTGAA---AAATCAT---A-TA-CGTTTTTCAGAGGC-AAAATGT---TAA--CA-TATGTATTACT-CTTAG-AA-T------------GA--ATTT-----GATA---AT--GATTTTT---G-TTTAAAAC-------AAC-TTT-AAAA--C-TAAGGA--TTTCTTT-TCCC------A-T-TTC----C-TTTT-CTGGC--AT----A-GG-AAAATGG-----G-------TC------AGAAAA-GG-GC----AAAAAAGGGA-GTTTTCCCCCCAAAAA-TGT--ATCTTATTTCCT-ATTTTTTGCAAA-TGTTT---G-C-AA---AAAA--A-ATTCGTTTGATG-------A-GT-TGCC-AAACG-GGGATAC-----A--ACAAATAAAGTTTAT--TCCTT-TTTTTT----------------GC-GGAT---TA---------TTTT---TTTCTTA-TGG-AGAGT---C---TCCA-GGG-AATCTAAACACTCAAAAC-CAA---ATATTT--G-CCAAA-ATATCCT
gi|16 : actgaA-AA--A---AAG-TTTA-ACAACAA----A----------AGATTGAA---AAATTAT---A-TAACGCTTTTCAGAGGC-AGAATGT---TAA--CAATGTTTATCACTGCTT-G-AA-T------------GA--TTTT-----GATA---AC--GATTTTT---G-TTTAAAACAATCATAAAC-TTT-AAAA--C-GAAGGT--TTGTTTT-TCCC------G-T-TAT----C-TTTT-CTGGC--AT----A-AA-AAAATGA-----A-------CCC-GAAAAAGAAA-GA-GT----GAAAAGGGGA-GTTTT--TCAC-AAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAATTTTTT---G-C-CA---AAAA--A-TCTCGTTTGATGAGTGG-AA-GT-AGCTAAACGG-GGGGTAC-----C--AACAATGTTATTTATTGTCA-TGTTTTGT----------------GCGGAAT---GAA-------TTATT---TTTCCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------T
gi|17 : actgaataaaGTA-AAGAA---AAG-TTTA-GCAACAATCAAA----------ATGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGT-AAACTAT---AAA--CA-TATCTATCACT-CTTAG-AA-T------------GA--TTTT-----GATG---AC--GATTTTC---G-TTTAAAACAACCATAAAC-TTT-AAAT--C-GGAAGA--TTGTTTT-TCCT------G-T-TGT----C-TTTT-CTAGC--AT----A-AA-GAAATGA-----G-------CCC-GAAAAGAAGA-GA-GT----GACAAGGGGA-GTTTT--TCACAAAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---CAAA--A-TCTCATTTGACGAGTGG-AA-GT-TGCT-AACTG-GAGATAT-----C--CAAAATGTTGATTAT--TCA-T-TTTTTT----------------
gi|18 : actta-AG--A---AAG-TTTA-GCAACAA----ATAAAATTTAAATGTTGAA---AAATTAT---A----CGCTTTTCAGAGGT-AAACTAA----AA--CA-TATCTAAC-CT-CTTAA-AAAT------------GA--TTTT-----GATG---AC--GATTT-C---G-TTTAAAACAACCATAAACATTT-AAAGATCAGAAAGA--TTGTTTTATCCT------G-TGTGTACAGT-TTTTACCAGC--AT----A-AA-AGATTGATAACGA-------CCCGGAAAAGAAGATGA-GCTCCAGACAAGGGGG-GTTTT--CAACAAAAA-TGTGGGTGT--TTTCCTAATTCATTGCTAA-TTCTTTAAG-CTCACGGAAAA--ATTCTCATTTGACGAGTGACAA-GT-Tttttt
gi|19 : TG--TTGCTAAA-C-TTT---TTTTACTCAGt
gi|19 : A-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTAAA---AAATTAT---A-TA-CGCTTTTCAGAGGC-AAAATAT---TAG--CA-TATTATTCACT-CTTAG-AA-T------------GA--TTTT-----GATC---AC--GATTTTC---A-TTTGAAACAACCATCAAC-TTTAAAAA--C-GAAGCA--TTGCTTT-TCCT------ATT-TGT----C--TTT-CTGGC--AT----AGAA-AAAATGA-----T-------------AGGGAAA------------AAAAGTG--------------AAAAA-TGT--GTGC--TTTCCT-ATTCATTGCAAA-TTTTT---G-T-CA---AAAA--A-TCTCGTTTGATGAG-GG-AATGT-TGCT-AACTG-GGGATACAAAAAA--AAAAATA-TATTTAT--TCA-aaaggttaaaaaattatatacgcttttcagaggcaaaatattagcatattattcactcttagaatgattttgatcacgattttcatttgaaacaaccatcaactttaaaaacgaagcattgcttttcctatttgtctttctggcatagaaaaaatgatagggaaaaaaagtgaaaaatgtgtgctttcctattcattgcaaatttttgtcaaaaaatctcgtttgatgagggaatgttgctaactggggatacaaaaaaaaaaatatatttattca
gi|20 : ctgagtaG-AA-GTATGTT-GAC-G-GAGAT-------C--AAAAA--------ACA-TCT-T-TTTTTT----------------CC-GAAT---GA-------TTTGTT---TTTCCTAGTGA-GGAG-T-ATCTCTCCAATGG-AATTTC-----TAAAACTGTCAAACAT-TTT--GCCGAAACACGCCC
gi|20 : GTCATTT-ATCGGATAT-AAAAGAT---GTTGCAAACACAAT--G---C--AA-ACATTGCATCCT--TCTTGGTTTT-TTGT-----ATT----------TAACTACAA---TTTGTGGA-AACTATTTTCAA---GA-G-agaggtgcggtaataacggtcattactcttaactcctgagaggaatgtagtagtagtcatttatcggatataaaagatgttgcaaacacaatgcaaacattgcatccttcttggttttttgtatttaactacaatttgtggaaactattttcaagagagtaaa
gi|21 : gaagtatgttgacggagatcaaaaaacatcttttttttccgaatgatttgtttttcctagtgaggagtatctctccaatggaatttctaaaactgtcaaacattttgccgaaacacgcccagaggtgcggtaataacggtcattactcttaactcctgagaggaatgtagtagtaAAAA-AA-GT----GAAAAGGGGG-GTTTT--TCACAAA----------GT--TTTC-T-ATTCATTGCAAA-TTTTT---GTC-CA---AAAACAA-TCTCGTTTGATGAGTGA-AA-AT-TGCT-AACTG-TGAATAC-----C--AAAAATGTTGTTTAT--TCA-T-TTTTCC----------------GG-GAAT---GA---------TTTT---TTT-------------TT-AT---TCCATTGG-AATTT------CCAAACT-TCA---AT-TTT--G-TGAAA-ACGCCCTTTGGTCATACTA-AAA-AAAAT-TAAAATATCATTT-ATGA---AT-GAAA-ATGAAGTTTGCAACACAGT--G---T--AAGACAT-GCATGTT--TA--GATTTT-TTGA-----ATT----------agtaaa
gi|22 : GTA-AA--A---AAGGTTTA-ACAACAA----A----------AGGTTGAA---AAATTGT---A-TA-CGCCTTCCAAATGC-AAAATGT---GAA--CA-TATTTATCACT-CTTAG-AA-T------------GA--TTTC-----GATA---AC--GATTTTT---G-TTTAATACAGTCATCAAT-TTT-AGAA--C-GGAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGCTTAA----A-AA-AAAAT-A-----GCCCCCCCCCC-TAAA--AAAA-GA-GT----GAAAA--AAATGTTTT--TCAAAAAAA---T--GTGT--TTTCCA-ACTCATTGCTAA-TT
gi|24 : ataccgaA-GA-AT----GAAAAACGGA-GTTTT--TGACGAAAA-TGC--GTGT--ATTCC--ATTCATTGCTAA-GTTTT---G-C-CA---AAA---A-TCTCGTTTGATGAGTGG-AA-GC-TGCT-AACCG-GGGATAT-----C--AAAAATGTTTTTTAT--T-A-T-TTTATT----------------GC-GAAT---GAA-------TTTTT---TTCCCTA-TGG-ATAGTTAAT---TCCACTGG-AATTT------TCAAACT-TCA---AT-TT
gi|27 : TGCTG-AAA-AAA-T--AAAAC---------------AC-GAAA-ATTAAGTTTGAAACACAGT--G---T--AAGACAT-GAATGTT--TA--GATTTT-TTGA-----ATT----------T--TTACAA---TT--TTCA-A--TATTTTTAA---GA-G-GT---C--AA-AAA-TTG--TTGCTAAA-A-AGT---TTTTACTCAGTA
gi|28 : gC-GAAT---GAAT-----TTT------TTTCCTA-TGG-AGAGTT-AC---CCCAATGG-AATTT------TCAAACT-TCA---CT-TTT--G-CGAAA-AC-CCCTTTAGTCATACTG-AAACAAA-T-TAAGATGTCCTTT-ATGA---AT-GACA-AT
gi|29 : TTTT----------------GC-GAAT---GA-T-----TTTTAT---TTTCCTA-TGA-AGGGTT-AT---TCCATTGG-AATT-------------------------TT--G-CGAAA-ATGTCCATTAGTAATACTG-AAA-TAA-T-TCAGATGTCATTT-ATGA---AT-GAAA-ATTAAATT
gi|30 : TG--TTGCTAAA-CTTTT---TTTTACTCA
gi|30 : A-AA--A---AAG-TTTA-GCAACAA----A-----------GGTTAAA-------TAT---AATA-CGCTTTTCAGAGGCAAAAATATATATAG--CA-TA-TTATCACT-CTTAGAAA-T------------GATTTTTT-----GATG---ACCGGATTTTaaggttaaatataatacgcttttcagaggcaaaaatatatatagcatattatcactcttagaaatgattttttgatgaccggatttt
gi|31 : tgagtaa--CA-TATTTATCACT-CTTAA-AA-T------------GA--TTTA-----AACA---AC--TATTTTC---G-TTTAAAACAATCGTAAAC-TTT-AAAA--C-GAAGGA--TTCTTTT-TCCT------G-T-TGC----C-TCTT--TGGC--AT----A-AA-AAA
gi|34 : GG-AGAGTT-AA---TCCATTGG-AATTT------TCAAGCT-TCA---AT-TTT--G-C-AAA-ACGTCCTTTGGTTATGCTG-AAA-AAA---------------T-ATCA---AT-GAAA-ATTAAGTTTGAAACACAG
gi|35 : g--AAGACAG-GCATATT--TAA-GATTTT-TTGA-----ATG----------T--TTACAA---TT-CTTAA-A--TATTTTGAA---GA-G-TT---T---A-AAA-ATG--TTGCTAAA-C--------TTTACTCAGT
gi|36 : ATTTTATTGT-----ATT----------T--TTACAA---TT-GTGAA-A--TATTCTCAA---GA-G-GT---C--AC-AAA-ATG--TTGCTAAAGT-TTT---TTTTACTCAGT
gi|37 : TT-AACA---AT-GAAA-ATTAAGTTTGAAACACAGT--GTATT--AAGACAT-GCATGTTGCTA--AACTTT-TT--------TT----------T--T
gi|38 : atgTT----------T--TTACAAATTTT-GTGAA-A--TATTTTCAA---AA-G-GT---TTTAA-AAA-AAG--TTGCTAAA-C-TTG---TTTTCCTCAGTAgct
gi|39 : -AA--A---ACG-TTTA-GCACCAA----A----------AGGTTAAA---AAAT-AT---A-TG-CGCTTCTCAGAAGC-AAAATGT---TTATGCA-TATta
gi|42 : TG--TTGCTAAA-C-TTT---TTTTACTCAaat
gi|42 : ataaaA-AA--A---AAG-TTTA-GCAACAA----A----------A-GTT--A---AAATTAT---A-TA-CTCTTTTaaagttaaaattatatactctttt
gi|43 : ataaatgagtaG--TTGCTAAA-C-TTT---TTTTAATCA
gi|43 : A-AA--A---AAG-TTTA-GCAACCA----A----------AGGTTGAA---AAATTAT---A-caaaggttgaaaaattata
gi|44 : tgattaTG--TTGCTAAA-C-TTT---TTTTACTCAGTA
gi|44 : A-AA--A---AAG-TTTA-GCAACAA----A----------ACGTTGAA---AAAaaacgttgaaaaa
gi|6 : tactgagtaTA-AA--AC--AAG-TTTA-GCAACAA----A----------AGGTTAAA---AGATTAT---A-TA-CGCTTTTCAGAGGC-AAAATGT---TCG--CA-TATTATTCACT-TTTAG-AA-T------------GA--TTTT-----GATG---AC--GATTTTC---G-TTTGAAACAACCATCAAC-TTT-AAAA--C-GAAGCA--TTGCTTT-TTTT------A-T-TGT----C-TTTT-CTGGC--AT----A-GA-AAAATGA-----G-------TC------GGAAAA-AA-GT----GAAAA---------------------A-TGT--GTGC--TTTTCT-ATTCATTGCAAA-TTTTT---G-T-GA---AAAA--A-TCTCGTTTGATGAG-GG-AATTT-TGCT-AACTG-GGGATACA----A--AAAAATGATGTTTAT--TCA-T-TACTTT----------------GC-GATTGCGGAATTGGAATTTTTT---TTTCCTA-TGGAAGAGTT-AA---TCCATTGGAAATTT------TCAAACT-TCA---AT-TTTTGG-CGAAC-ACATCTTATGGTTATACTGAAAA-AAA-T-TAAGAT-TCATTTAATTT---ATGGAAA-ATTAAGCTTGAAACACAGTGGG---TAAAAGACAT-GCATGTT--TA--GA-ATT-TTAA-----ATTTTTTTTTGTGT--TTACAA---TT-GTGAA-A--TCTTTTCAATTTAATGCGT---A--AA-AAG-AAGGTTTGCTTCA-C-ATGACATTTTACTCAG
gi|9 : tgaaGTA-AA--ATAGAAG-GTTA-GCAACTA----A----------ACGTTAAA---AAATCAT---A-TG-CGCTTTTCAGAGGC-AAAATGT---TAA--GA-TATTTATCACT-CTTAG-AA-TGATTTTGATGACGA--TTTTCGTTTAATAGAAAC--GAATGTCTGGA-NNNNNNNNNNNNNNNNNN-NNN-NNNN--N-NNNNNN--NNNNNNN-NNNN------N-N-NNN----N-NNNN-CTAGC--AT----A-AA-AA--TGA-----G-------CTC-TAAAAGAAAA-AAAGT----GAAAAAGGGA-GTTTT-----CA---------------------T-ATTCATTACTAA-TTTTT---G-C-CA---AAAG--A-TTTCGTTTGATGAGTGG-AA-GT-TGCT-AAAAG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-TTTTTTTTTTTTTTTTTTTTTGGC-GAAT---GGAC-----ATTTTT---TA-CCTC-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCTAACT-TCA---GT-TTT--G-CGAAA-GCGTTCTTTGGTTATACTG-AAA-AAA-T-TAAGATAGCATTT-ATCA---AT-GAAA-ATTGAGTTTGAATCACAGT--G---T--AAGACAG-GCATATT--TA--TATGTT-TTTA-----ATT----------T--TTACAA---TT-GTGAA-A--TATTTTCAA---GA-G-GT---C--AA-AAA-ATG--TATCTAAA-C--TT---TTTTGCTTGGTAgtatacgtcatcatatacgtataaagtagcagaatgatcatgatatttgtaacaggtgtctaaggtcataataacaaaataattaaacaatgctaaactttttaaaaaataaatttga
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): ATTTGACCACCAGTTTTCAAGAAATTTAAGTATTGTTTAAAAAGCCCCTTTTATCAGAAATAATTAAATCAAAGTACTGACAGTACTGATAGACGGTGGCGTGGATTTGGAATAGCTGAGCTAAGGCTGCAAAAGTCACTACCAATCAATTTATTGTAATAAACTGTGTATATACAGAGTATTGAGATATTGCATGTATATGAAAGCAAAAGTATTATTTTGGCATATTTTATTAAAATGCAATTGCAAAAGGAACGTAAAGTGGTGTGCACGTTAACTAACAAAATGGACATTTATCAGTCATATAAATTAAAGAATGAATTGAAAGTGAACATAAAATATGTCATTTGTAACATTGAAGAAATATGTTCTCCTTTCTATATTGTAAATTTTGAATGATAGTCAACCAAAATACCTTTTACATACACGAGCAGTACAGCCATCATCGCTATTATAATAGCATCCAGTAAACATAAAAAAAACTATCAGATCATATCACAACAAATAAACACAATGCAACGAGTTTCTATCATGTCTACAGAATGAGTCAGAGGTAGTTGGTGATGGGCCTGTAAATGGTAATATTCGCCTAAAAACTTTAATTTCAAAGTTAAAATCTTGACACATTCATACCCACGGCATGAAACATCACTGGGAAAGGAAGCGCCTTTCCACAATAGTGGCTTCCATTTCAATATGTGAGAATTCTGAGATGTCGCTAAATCTTTGTAACTGTTCACCTATCAAAGTAATGTCCACAACAAAGTCTTTATAAACTCCAATTTCTTCCACACAGACTTCGCATGTTGTGCCTCCAACTGTCCAGAAAATTCTCTTTCCATTGGCTGGGTCTTCTGCATGATAAATATTAATTACGAAAAATTGTTTACATTTAAAATGTTGAGTGTTTGGCGAAGGATCTACCAATAATAAATCAAACACTCTACTAGT
Unaligned ( gi|2 ): AATCAAAGTACTGACAGTACTGATAGACGGTGGCGTGAATTCAGAAAAACTAAGCCAAGGCAGCAAAAGTCACTACCAATGGATTTATTGTGTAAACTGTGTATTGACAGAGTATTGACATATTGCATGTTTATAAAAACAAAAGTATTATTTGGTTTTAAAAGAAATTGCAGGAGGAACGTATGATATGGCGTTCAAGTAAACAAAATGGGCAGTCATAATTATAAGGTAAAAATTCAATTGAAAGTGAACATAAAACATATCATTTGTAATATTGTAGTTTACATTTAATACTACCGGTAATTTTAAGTCAGACAGATTCTACTTTGTATATTGTAAAGTATTTTCTGTACAAGGCATCGTCGTTATAGCATTCAGTAATTGAATAACCCCCCAACCCCCTCAAAAAAAAACCCAAACAATCACATCATATCACATAACTGAACAGTAAAATAGAGCAAAGGGAGATCAGCCGCTTAAAATTTAAGCAACAAATATAACGAATATCTATCATGTCTTCAGAATGAACTATCCTAAGAATTAAGTCAATGGTAGTTGGTGATTGGCCTATGGAATGGCAATGTTTGACTACAAATTTCAATATTCGAGAATTCTTAGATGTCACCAAATCTTTGTAACTATTCACGTATCAAAGCAATGTCCACAACAAAGTCTTTATAAGCTCCATTTTTTTCCACAGATTTCGCATGTTGTATCGCCAAAGGAGATTGCCTCCAATGTCCATAAATTTCTCTCTTACACATGATAAATATTAATTACGAAGAACTGTTTACATTTAAAATACTGAGCGAAGGAGTTATATCTACCTTTATTTATTGCAGCCATAGCACAAGTGACGCTCAAACTTGCAAACACTCTACCAGTGGTTCACTCTGTTACCTCACCGGTTTTTTTTTTTATGAATATAACAAGTACAGA
Unaligned ( gi|3 ): ATATATCAAAGTACTGATAATACTGATAGACGATGGCGTGGATTTGGAAAAGCTGAGCTAAGGCTGCAAAAGTCACTACCAATCAATTTATTGTCATAATCTGTGTATATATAGAGTATTGAGATATTGCATGTATATGAAAGCAAAAGTATTATTTTGGCATATTTTATTAAAATGCAATTGCAAAAGGAACGTAAAGTGGCATGCACGTTAACTAACAAAATGGACACTTATCAGTCATATAAATTTTAAAAAAATGAATTGAAAGTCAACATAAAATATATCATTTGTAACATTGAAAATTATGTCCTCCTTTCTATATTGTAAATTTTGAATGATAGTCAACCAAAATACCTTTTACATTTACAAGCAGTACAGGCATCCAGAGAAGTAAGCTTGCATCCCCTGTTGACATCCAGTAAACNNNNNNNNNNNNNNNNNNNNNNNNNAATAAAAAAACAAACAAACAACAAACAAAAAAACTATCAGATCATATTACAACAAATAAATACAATGTAACAGTATCTATCATTCTACAGAAAGTCACATATTGTGATTGTACTAATGGCAATATTCGCCTAAAAACTTTCAAAGTCAAATCTATGCATACCCACGCATTAAGCTTTCACTGAAAGAAGCCTTTCACAATAGTGTTCCATTTCAAATTTTGAATTCTTGAGATGTCCTAAATTTTTAAACACTTCACCTATCAAATAATTATTTCCACAACAAATCTTATTAAACTCCAATCTCTTCCACACAGACTCGCATGCT
Unaligned ( gi|4 ): AATCAAGTACTGATAGACGGTGGCATTGGATATATGGAAAAACATTAAAATATTCATTTATATTTAAAGAAATATGTTCTCCTTTTATATAGATGTAAATTTTGAAGGATAGTATACCAAAATACCCTTTTTACATTTAATGTACAAGCAGTTAGCATCATACGCTATACAGTAAACATTAAAAACAAATCTATCAGATCACATTACAACAAATGAACACTGTAACGAATACCTATCCATGTCTACAGATAACGTATCCAATTAAAGTCAATGGAAGTTGGTGATGGGCCTATAGAATGGCAATTCGACTTTACAAACTTCCAAATTTGACACATACATATGAAGCTTCCCCACGGGAAGCTTCACTGGGAAAAGGAAGTCTATTCCACAATAGTGTCTTCCATTTTCAATATGTCGGAATTTTTGAAGATGAGCTCGCTAAAAATCTTATGTAACTGTTTCATCGTATTCAAAAATAATATTCAAAACAAAGCCTTTATTAAAGTCAATCTCTTCCACACCGACTTCGCACATGTTTAATCTGTGTCGCCAATAGGAGATTGCTTCCAACCTAAGAAAATTATTCTTCCATTGGCTGGGTCTTCTGCATGATGCGATCATTAATTACGAAGAATTGTTTAACATTTAAAATGTTGAGCGTTTCGGCGAAGGAGGCCGAAAGATACCAGTAACAAGCAAACACATCTGCTAGTGAATTCCCTGCGTTGAAATACACCGATTTTTTCGATAAATATA
Unaligned ( gi|5 ): AATCAAAGTACTGACAGTACTGATAGACGGTGGAGTCAACATAAAATATTTCATTTGTAACATTAAAGAAATATGTTCTCCTTTGTATAGTATAAATTTTGAAGAATAGTCTACCAAAATACCTTTTACATTTACATGTACAAGCAGTACAGGCATCATCGCTATAGAGGCATCCAGTAAACATAAAAAAAATCTATCAGATCACATTACAACAAATGAACACTGTAACGAATACCTATCATGTCTACAGAATGAACTATCCCAAGAATTAAGTCAATGGAAGTTGGTGATGGGCCTATGAATGGCAATAACTTCAAATCTTGACACATTCACATCCACGTACGGTATGAAGCTTTACTGGGAAAGGAAAACTTCCACAATAGTGTCTTCCATTTCAATATGTGAGAATTCTGAGATGTCGCATAAAATATTTGTAACTGTTCATGTATCAAAGTAATGACCAAAACAAAGCCTTTATAAAGTCCAATATCTTCCACACCGACTTCGCATGTTGTGTCGCCAATAGGAGATTGCAATTGCCTCCAACTGCCCAGAAAATTCTCTTTCCATTGGTTGGGTCTTCTGCATGATATATATTAATTACGAGAATTGTTTACATGTATATTTAAAATGTTGAGCGTTTGGCGAAGGAGCTACAGTAACAAGCAGACACTCTGCTAGTGATTCCCTGCGTTAACTCGCCGCTTTTTCATAAA
Unaligned ( gi|7 ): GCTAAGCGCCAGCAAATTTTCACCTACCCAATCAATCTTTATGATATAAAACAGGTATATATACAGAGACAAATACTGAGGCTATCTGCATGTTTTATTTATTACTTGTGATATGCACGATACCGCCATTAATGTGGCGTTCATCAGTAAACACATAAGAGCATCTTATCAGCATATAAGTTAAAATAATTCAATTTAAAGCGAATATCAAACATCTCATTCCTGTAACAGTAATAACATTTCAATCACTTACCGGGTCGTAATTACATCAATACAGAAATTTACCTTGTCATATTAAAAGATTTGAAAGAATAGTCAATCAAAACATACTTTTTATTTTATGCTACAAAGCAGCACAGGCCATCATCATTAATCCAGTTTAATGAACTAAAAAAACAGAACAAACAAAAAACCAAAACCCAAACGCTCTTGACCTGAATCACTATTATGTTAACAATAATCTTATCCATGTCTACAGAACATAAAACCTTACTAAAGATTAGTCATATGATAGCTTTGGTACTTGCCTATGATTACCAACTGATCGTACCAACAAACTATCAATGTTTCAGACGCTCACGGAAAGAAAAACCTCTCCACAATACCGTGTCTTTTCCCATTTCAATATTCAGACTTCCTTAGATGCCGCCAAATCAATCGTTAGCCTGTT
Unaligned ( gi|8 ): ATATGTTCTCCTTTGTATAGTGTAAATTTTAAAGGATAGTCTATCAAAATACCTTTTACATTTACATATACAAGCAGTACAGGCATCATCGCTATAGAGGCATCTAGTAAACATAGTAAACATAAAAAATCTATCAGATTACATTACAACAAATGAACACTGTAACGAATATCTATATCATGTCTACAGAATGAAGTATCCCAATAATTAAGTCAATAGAAGTTGGTGATGGGCCTATGAATGGCAATATTCGACTACAAACTTCAAATCTTGACACATTCACACCCACGTACGGTATGAAGCTTCACTGGGAAAGGAAGCCTTTCCACAATAGTGTCTTCCATTTCAGATGTCGCATAAAATCATGTATCAAAGTAATGACCAAAACAAAGCCTTTATAAAGTCCAATCTCTTCCACACCGACTTCGCATGTTGTGTCGCCAATAGGAGATTGCAATTGTCTCCAACTGCTCGGATGATTCTCTGTCCCTTGGCTGGGTAGTCGGCATGATATCTATTGATTACGAAGAATTGTTTATATCTAAAATGTTGAGCGTTTGGCGAAGGAGCTACCAGTAACAAAGCAGACACTCTGCTAGTGATTCCCTGCGTTAACTCACCGTTTTTTCAT
Unaligned ( gi|23 ): AATCAAAGTACTGATAAACGGTGGCTTAGATTTGGAAAAGTCAACATAAAATATTTCATTTGTAACATTGAAGAAATATGTAGTGCTTTGTATAGTGTAAATTTTGAAGGATAGCCTACCAAAATACCTTTTACATTTACATGTACAAGCAGTACAGGCATGATCGCTATAGAGGCATCCAGTAAGCATAAAAAAACCTATCAGATCACATTACAACAAATGAACAC
Unaligned ( gi|25 ): CAAAGTAGCTGGCCTTAAGTATTGATAGACGGTGAGTCAAATTTTACAATATTTTGTCAATGTAGCAATATTTGATATGTTTCTAAATTTGTTGGGTCATAATTGTCTAGAATAGTGATATTAAATTAACATATACGCACAAGCAGACAGCAT
Unaligned ( gi|26 ): AATAACAAAGTACTGGACAGTACTGATAGACGGCTGGCGTTGAATTCAGAAAAAAACTAAGCCAAGGCAGCAAAAGCACTACCAATGGATTTATTGTCGTAAACTGTGAGTTGGTTAAATTGATCAGCATTTTTA
Unaligned ( gi|32 ): TACAGAATGAACTATACTAAGAATTAAGTCAATGGTAGTTGCTGATTGGCCTATGAATGGCAATGATCGACTACAAACTTTCAATGTTCATGACGCTTCAC
Unaligned ( gi|33 ): AAGACAATATTCGCTTGCAAACTTTCAAAGTTCAAATCTTGACACATTCATACCCACGGCATGAAGCTTCACTGGGAACGGAAACCTTTCCACGATAAA
Unaligned ( gi|40 ): TTGGCGAAAGGAGTTACCATTAACAAAGCAGACACTCTGCTAGTGATTCCCTGTGTTAACTCAC
Unaligned ( gi|41 ): TAAATCAAAGTACTGATAGTACTGATAGACGGTGGCGTGGTTGTGAAAAGTTTAGCTAAGGTGG
Unaligned ( gi|45 ): TAATCAAAGTACTGACAATACTGATAGACGGTG
Unaligned ( gi|46 ): GAATTCTGAGATGTCGCTAAATCTTTGTAAC
Alignments
lowQualScore : 111111111111 1111111111111111111 1111111111111111 11111111 1111111111111111 22222222 111111 1111111 1111111111 111111
lowQualScore : 2 33 666 2 2 4444 9999999999 333 444 2 2 2 444 33 2 2 2 2 333333333333 33 66666 444 33 555 2 1 2 2 33 2 33 2 888888 2 2 6666 2 2 33 6666 2 2 9999999999999999999 2 2 6666 2222222222222222 0 1 2 33 33 2 0 2 555 3 3 555 555 3 5 2 8 2 3 0 3 22222222 3 66 2 2 7777777777777777 2 444 88888888 444 1 2 2 2 444 2 000000 2 555 2 44 3 3 2 3 3 3 44 4 2 555 2 2 55 666 44 3 44 77 3 1111111 2222222222 44 555 33 3 44 555 3 3 000000 3 3 33 2 77 333
lowQualScore : . .. ... . . .... .......... ... ... . . . ... .. . . . . ............ .. ..... ... .. ... . . . . .. . .. . ...... . . .... . . .. .... . . ................... . . .... ................ . . . .. .. . . . ... . . ... ... . . . . . . . . ........ . .. . . ................ . ... ........ ... . . . . ... . ...... . ... . .. . . . . . . .. . . ... . . .. ... .. . .. .. . ....... .......... .. ... .. . .. ... . . ...... . . .. . .. ...
lowQualScore : 2 11 111 2 2 7777 7777777777 999 111 4 5 7 777 44 5 7 7 7 777777777777 77 77777 777 77 000 9 4 9 9 99 9 99 9 222222 9 9 1111 9 9 99 1111 9 9 9999999999999999999 9 9 1111 4444444444444444 7 4 9 99 99 9 3 9 444 1 1 444 999 1 3 9 6 9 1 9 1 44444444 2 33 7 9 7777777777777777 7 777 77777777 777 8 9 7 7 777 7 333333 9 000 9 22 1 1 6 3 3 3 66 0 9 000 9 9 00 444 66 3 66 99 1 1111111 5555555555 22 888 88 3 66 888 3 3 333333 6 3 11 2 88 999
consensus : GTA-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGC-AAAATGT---TAA--CA-TATTTATCACT-CTTAG-AA-T------------GA--TTTT-----GATA---AC--GATTTTC---G-TTTAAAACAACCATAAAC-TTT-AAAA--C-GAAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGC--AT----A-AA-AAAATGA-----G-------CCC-GAAAAGAAAA-GA-GT----GAAAAGGGGA-GTTTT--TCACAAAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---AAAA--A-TCTCGTTTGATGAGTGG-AA-GT-TGCT-AACTG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-TTTTTT----------------GC-GAAT---GAAT-----TTTTTT---TTTCCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCAAACT-TCA---AT-TTT--G-CGAAA-ACGTCCTTTGGTTATACTG-AAA-AAA-T-TAAGATGTCATTT-ATCA---AT-GAAA-ATTAAGTTTGAAACACAGT--G---T--AAGACAT-GCATGTT--TA--GATTTT-TTGA-----ATT----------T--TTACAA---TT-GTGAA-A--TATTTTCAA---GA-G-GT---C--AA-AAA-ATG--TTGCTAAA-C-TTT---TTTTACTCAGTA
Reference ( family-3185 ) : GTA-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGC-AAAATGT---TAA--CA-TATTTATCACT-CTTAG-AA-T------------GA--TTTT-----GATA---AC--GATTTTC---G-TTTAAAACAACCATAAAC-TTT-AAAA--C-GAAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGC--AT----A-AA-AAAATGA-----G-------CCC-GAAAAGAAAA-GA-GT----GAAAAGGGGA-GTTTT--TCACAAAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---AAAA--A-TCTCGTTTGATGAGTGG-AA-GT-TGCT-AACTG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-TTTTTT----------------GC-GAAT---GAAT-----TTTTTT---TTTCCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCAAACT-TCA---AT-TTT--G-CGAAA-ACGTCCTTTGGTTATACTG-AAA-AAA-T-TAAGATGTCATTT-ATCA---AT-GAAA-ATTAAGTTTGAAACACAGT--G---T--AAGACAT-GCATGTT--TA--GATTTT-TTGA-----ATT----------T--TTACAA---TT-GTGAA-A--TATTTTCAA---GA-G-GT---C--AA-AAA-ATG--TTGCTAAA-C-TTT---TTTTACTCAGTA
gi|10 : GTA-AA--A---AAG-TTTC-GCAACAA----A----------AGATTGAA---AAATTATTATA-TA-TGCCTTTCAGAGGC-AAAGTGT---TCA--CA-CATTTAATACT-CTTAG-AA-T-------------A--TCTT-----AATA---GC--AATTTTC---A-TTTAACACAACCATAAAC-TTT-AAAA--C-GAAGGA--TTATATT-TCCT------G-T-TGC----C-TTTT-GTAGC--AC----C-AA-AAAATGA-----G-------CCC-GAAAAGAAAA-GA-GT----GAAAAAGGGA-GTTTT--TCACAAAAAATGT--GTGT--TTTCCT-ATTCATTACTAA-TTGTT---A-C-CA---AAAA--A-GCTCGTTTGATGAGCGG-CA-GT-TGCT-AACTG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-ATTTTT----------------GC-GAGT---GAAT-----TTTTTT---TTTCCTA-TGG-AGAGTT-AT---TGCATTGG-AATTT------TCAAACT-CTA---AT-TTT--G-CGAAA-ACGTCCTATGGTTATACTG-GAA-ACA-TAAAAGATGTCATTT-GTCA---AT-G-AA-ATTAAATTTAAA--ACAGT--G---T--AAGACAT-GCATCAT--TG--GATTTT-TTTA-----ATT----------T--TTACAA---TC-GTGAA-A--TATTTTCAA---GA-G-GT---C--AAGAAA-ATG--TTGCTAAA-C-TTT---TTTTTCTCAGTA
gi|11 : GTACAA--A---AAA-ATTA-GCAACAG----A----------AGGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGC--AAATAC---TAA--CA-AATTTATCACT-C--AG-AA-T------------GC--TTTT-----GATA---AT--GATTTTT---GTTTTAAAATAACCATAAAC-TTT-AAAA--C-GAAGGA--TTG--CT-TCCT------G-T-TGC----C--TTT-CTAGC--AT------AA-AATATTA-----G-------CCC-GTTAAGAGAA-GG-G---------------------------------TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---T-C-CA---AAAT--T-TCTCGTTTGATGAGTGG-AA-GT-TGCT-AACTG-GTGATAC-----A--AAAAATGTTCGTTAT--TCA-T-TTTTTT-----------------------------T-----TTTTTT---TTT
gi|11 : actgaTTTTTTTT--TTT-T-TTTTTG----------------GT-GAAT---GAAT-----TTTTTT---TT-CCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCAAACA-TCG---AT-TTT--G-CGAAA-ACGTCCTTTGGTTATACTG-AAA-TAA-T-TAAAATGTCATTT-ATCA---AT-GAAA-ATTAAGTTT---------------------GACAT-GCATGTT--TA--GAATTT-T--A-----ATG----------T--TTACAA---TT-GTGAA-A--TGTTTTCAA---GA-G-GT---T--AA-AAA-ATG--TTGCTAAA-C--TT---TTTTGTTCAGTAttttttttttttttttttttttttggtgaatgaatttttttttcctatggagagttattccattggaattttcaaacatcgattttgcgaaaacgtcctttggttatactgaaataattaaaatgtcatttatcaatgaaaattaagtttgacatgcatgtttagaattttaatgtttacaattgtgaaatgttttcaagaggttaaaaaatgttgctaaacttttttgttcagtata
gi|12 : actgagtacaaaaaaattagcaacagaaggttgaaaaattatatacgcttttcagaggcaaatactaacaaatttatcactcagaatgcttttgataatgatttttgttttaaaataaccataaactttaaaacgaaggattgcttcctgttgcctttctagcataaaatattagcccgttaagagaagggtgtgtgttttcctattcattgctaattttttccaaaatttctcgtttgatgagtggaagttgctaactggtgatacaaaaaatgttcgttattcattttttttttttttttttttttttTG--TTGCTAAA-C-TTT---TTTTATTCAta
gi|12 : A-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTTAATAAAAATTAT---A----CGCTTTTCAGAGGC-AAAATGT---TAG---------------------G-AA-A------------GA--TTTT-----GATG---AC--GATTTTC---G-TTTGAAACAACCATCAAC-TTT-AAAA--C-GAAGCA--TTGCTTT-TCCT------A-T-TGT----C-TTTT-CTGGC--AT----A-GA-AAAATGA-----G-------C-------GGAAAA-AA-GT----GAAAA---------------------A-TGT--GTGC--TTTCCT-AT-CATTGCAAA-TTTTT---G-T-CA---AAAA----TCTCGTTTGATGAG--G-AATGT-TGCT-A-CTGTGGGATAT-----CTAAAAAATGTT---TAT--TCA-T-TATTTT----------------GC-GAAT---GA--------TTTTT---TTTCCTG-TGG-AGAGTT-AA---TCAATTGG-AATTT------TCAAACT-TCA---AT-TTT--G-CGAAA-TCATCCTTTGGTTATACTG-AAA-AAA-T-TAAGATGTCATTT-ATTA---AT-GAAA-ATTAAGCTTGAAACACAGT--G---T--AAGACAT-GCATGTT--TA--GATTTT-TT-ATTTTTATT----------T--TTACAA---TT-GTGAA-A--TATTTTCAA---AA-G-GTAAAA--AA-AAA-AAG--TTGCTAAA-C-TAT---TTTTACTCAGTAaaaggtttaataaaaattatacgcttttcagaggcaaaatgttaggaaagattttgatgacgattttcgtttgaaacaaccatcaactttaaaacgaagcattgcttttcctattgtcttttctggcatagaaaaatgagcggaaaaaagtgaaaaatgtgtgctttcctatcattgcaaatttttgtcaaaaatctcgtttgatgaggaatgttgctactgtgggatatctaaaaaatgtttattcattattttgcgaatgattttttttcctgtggagagttaatcaattggaattttcaaacttcaattttgcgaaatcatcctttggttatactgaaaaaattaagatgtcatttattaatgaaaattaagcttgaaacacagtgtaagacatgcatgtttagattttttatttttatttttacaattgtgaaatattttcaaaaggtaaaaaaaaaaagttgctaaactatttttactcagta
gi|13 : tgaata-ATG--TTGCTAAA-C-TTT---TTTAAATCAGTA
gi|13 : taaagaaaacaaataTA-AA--A---AAG-TTTA-GCAACA---------------------------------------TA-CGCTTTTCAGAGGC-AAAATGT---TAT--CA-TATTTACCACT-CTTAG-AA-T------------GA--TTTT-----GATA---AC--GATTTTT---G-TTTAAAACAACCATACAC-TTT-AAAC--C-TAAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGA--ATTTTCA-CA-AAAATGacgcttttcagaggcaaaatgttatcatatttaccactcttagaatgattttgataacgatttttgtttaaaacaaccatacactttaaacctaaggattgtttttcctgttgccttttctggaattttcacaaaaatgtatttttcctattcattgctaatttttgccaaaaatctcgttagatgagtagaagttgttaactgggaataccaaaactgttgtttattcattttctttcgcttttttaaatttatttatttatttttttcaaacttcaattctgcgaaaacgttatactgaaaaaattaagatgtcatttatcaatgaaaatgtagtttgaaacacagtgtgagaaatgcatgttcagattttttgaattttacaattgtgaaatattttcaagaggtcaaaaatatgttgctaaacctttttcgctcttat
gi|13 : taaagaaaacaaatatactgattTTT--TCACAAAAA-TGT--AT-T--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---AAA---A-TCTCGTTAGATGAGTAG-AA-GT-TGTT-AACTG-GGAATAC-----C--AAAACTGTTGTTTAT--TCA-T-TTTCTT----------------TC-G---------C-----TTTTTTAAATT---TA-T-------TT-AT---T-TATTT----TTT------TCAAACT-TCA---AT-TCT--G-CGAAA-AC--------GTTATACTG-AAA-AAA-T-TAAGATGTCATTT-ATCA---AT-GAAA-ATGTAGTTTGAAACACAGT--G---T--GAGAAAT-GCATGTT--CA--GATTTT-TTGA-----A-T----------T--TTACAA---TT-GTGAA-A--TATTTTCAA---GA-G-GT---C--AA-AAATATG--TTGCTAAA-C-CTT---TTTCGCTCtatttttcctattcattgctaatttttgccaaaaatctcgttagatgagtagaagttgttaactgggaataccaaaactgttgtttattcattttctttcgcttttttaaatttatttatttatttttttcaaacttcaattctgcgaaaacgttatactgaaaaaattaagatgtcatttatcaatgaaaatgtagtttgaaacacagtgtgagaaatgcatgttcagattttttgaattttacaattgtgaaatattttcaagaggtcaaaaatatgttgctaaacctttttcgctcttat
gi|14 : taaagaaaacaaatatactgatttaaaaaagtttagcaacatacgcttttcagaggcaaaatgttatcatatttaccactcttagaatgattttgataacgatttttgtttaaaacaaccatacactttaaacctaaggattgtttttcctgttgccttttctggaaGTA-AA--G---AAA-T----GCAACAA----A----------TGGTTGAA---AAGTTAT---A-TG-CTCTTTTCAGAGGC-AAAATGT---TTA--CA-TACATATCATA-CTTAG-AA-T------------GG--TTTT-----GATA---AT--GATTTTC---G-ATTGAAACAACCATGAAC-TTT-ATAT--C-G-AGGAGTTTTTTTT-TTCTTTTTTGG-T-TGC----CTTTTT-CCGGT--AT----A-AATAATAT---------------CCC-GAAAAGGAAA-GA-GT----ttat
gi|14 : ga--AAGAGTTTTATTTAT--TCA-T-TTTGGG----------------GG-GTAT---G----------CTTT---TTTTCAA-TGG-AGAGTT-AT---TCAGTTAG-AATTT------T---------------------G-CGAAA-ACATCCTTTGGGTATACCG-AAA-AAA-T-GAATATTGCATT--ATCA---AT-GAAA-TTTTAGTTTGAAACACAGT--G---T--AGGACAT-GCATATT--TA--GATTGT-TTGC-----ATT----------T--TCACAA---TT--TACATA--TGTTTTCAA---GA-G-G----C--TA-AAA-ATG--TTGCCAAT-C--AT---TTTTGTTCAGTAtttatttattcattttggggggtatgctttttttcaatggagagttattcagttagaattttgcgaaaacatcctttgggtataccgaaaaaatgaatattgcattatcaatgaaattttagtttgaaacacagtgtaggacatgcatatttagattgtttgcattttcacaatttacatatgttttcaagaggctaaaaatgttgccaatcatttttgttcagta
gi|15 : gagtaaagaaatgcaacaaatggttgaaaagttatatgctcttttcagaggcaaaatgtttacatacatatcatacttagaatggttttgataatgattttcgattgaaacaaccatgaactttatatcgaggagttttttttttcttttttggttgcctttttccggtataaataatatcccgaaaaggaGTA-AA--A---ATG-TTTTTGCAATAA----A----------AGGTTGAA---AAATCAT---A-TA-CGTTTTTCAGAGGC-AAAATGT---TAA--CA-TATGTATTACT-CTTAG-AA-T------------GA--ATTT-----GATA---AT--GATTTTT---G-TTTAAAAC-------AAC-TTT-AAAA--C-TAAGGA--TTTCTTT-TCCC------A-T-TTC----C-TTTT-CTGGC--AT----A-GG-AAAATGG-----G-------TC------AGAAAA-GG-GC----AAAAAAGGGA-GTTTTCCCCCCAAAAA-TGT--ATCTTATTTCCT-ATTTTTTGCAAA-TGTTT---G-C-AA---AAAA--A-ATTCGTTTGATG-------A-GT-TGCC-AAACG-GGGATAC-----A--ACAAATAAAGTTTAT--TCCTT-TTTTTT----------------GC-GGAT---TA---------TTTT---TTTCTTA-TGG-AGAGT---C---TCCA-GGG-AATCTAAACACTCAAAAC-CAA---ATATTT--G-CCAAA-ATATCCT
gi|16 : actgaA-AA--A---AAG-TTTA-ACAACAA----A----------AGATTGAA---AAATTAT---A-TAACGCTTTTCAGAGGC-AGAATGT---TAA--CAATGTTTATCACTGCTT-G-AA-T------------GA--TTTT-----GATA---AC--GATTTTT---G-TTTAAAACAATCATAAAC-TTT-AAAA--C-GAAGGT--TTGTTTT-TCCC------G-T-TAT----C-TTTT-CTGGC--AT----A-AA-AAAATGA-----A-------CCC-GAAAAAGAAA-GA-GT----GAAAAGGGGA-GTTTT--TCAC-AAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAATTTTTT---G-C-CA---AAAA--A-TCTCGTTTGATGAGTGG-AA-GT-AGCTAAACGG-GGGGTAC-----C--AACAATGTTATTTATTGTCA-TGTTTTGT----------------GCGGAAT---GAA-------TTATT---TTTCCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------T
gi|17 : actgaataaaGTA-AAGAA---AAG-TTTA-GCAACAATCAAA----------ATGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGT-AAACTAT---AAA--CA-TATCTATCACT-CTTAG-AA-T------------GA--TTTT-----GATG---AC--GATTTTC---G-TTTAAAACAACCATAAAC-TTT-AAAT--C-GGAAGA--TTGTTTT-TCCT------G-T-TGT----C-TTTT-CTAGC--AT----A-AA-GAAATGA-----G-------CCC-GAAAAGAAGA-GA-GT----GACAAGGGGA-GTTTT--TCACAAAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---CAAA--A-TCTCATTTGACGAGTGG-AA-GT-TGCT-AACTG-GAGATAT-----C--CAAAATGTTGATTAT--TCA-T-TTTTTT----------------
gi|18 : actta-AG--A---AAG-TTTA-GCAACAA----ATAAAATTTAAATGTTGAA---AAATTAT---A----CGCTTTTCAGAGGT-AAACTAA----AA--CA-TATCTAAC-CT-CTTAA-AAAT------------GA--TTTT-----GATG---AC--GATTT-C---G-TTTAAAACAACCATAAACATTT-AAAGATCAGAAAGA--TTGTTTTATCCT------G-TGTGTACAGT-TTTTACCAGC--AT----A-AA-AGATTGATAACGA-------CCCGGAAAAGAAGATGA-GCTCCAGACAAGGGGG-GTTTT--CAACAAAAA-TGTGGGTGT--TTTCCTAATTCATTGCTAA-TTCTTTAAG-CTCACGGAAAA--ATTCTCATTTGACGAGTGACAA-GT-Tttttt
gi|19 : TG--TTGCTAAA-C-TTT---TTTTACTCAGt
gi|19 : A-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTAAA---AAATTAT---A-TA-CGCTTTTCAGAGGC-AAAATAT---TAG--CA-TATTATTCACT-CTTAG-AA-T------------GA--TTTT-----GATC---AC--GATTTTC---A-TTTGAAACAACCATCAAC-TTTAAAAA--C-GAAGCA--TTGCTTT-TCCT------ATT-TGT----C--TTT-CTGGC--AT----AGAA-AAAATGA-----T-------------AGGGAAA------------AAAAGTG--------------AAAAA-TGT--GTGC--TTTCCT-ATTCATTGCAAA-TTTTT---G-T-CA---AAAA--A-TCTCGTTTGATGAG-GG-AATGT-TGCT-AACTG-GGGATACAAAAAA--AAAAATA-TATTTAT--TCA-aaaggttaaaaaattatatacgcttttcagaggcaaaatattagcatattattcactcttagaatgattttgatcacgattttcatttgaaacaaccatcaactttaaaaacgaagcattgcttttcctatttgtctttctggcatagaaaaaatgatagggaaaaaaagtgaaaaatgtgtgctttcctattcattgcaaatttttgtcaaaaaatctcgtttgatgagggaatgttgctaactggggatacaaaaaaaaaaatatatttattca
gi|20 : ctgagtaG-AA-GTATGTT-GAC-G-GAGAT-------C--AAAAA--------ACA-TCT-T-TTTTTT----------------CC-GAAT---GA-------TTTGTT---TTTCCTAGTGA-GGAG-T-ATCTCTCCAATGG-AATTTC-----TAAAACTGTCAAACAT-TTT--GCCGAAACACGCCC
gi|20 : GTCATTT-ATCGGATAT-AAAAGAT---GTTGCAAACACAAT--G---C--AA-ACATTGCATCCT--TCTTGGTTTT-TTGT-----ATT----------TAACTACAA---TTTGTGGA-AACTATTTTCAA---GA-G-agaggtgcggtaataacggtcattactcttaactcctgagaggaatgtagtagtagtcatttatcggatataaaagatgttgcaaacacaatgcaaacattgcatccttcttggttttttgtatttaactacaatttgtggaaactattttcaagagagtaaa
gi|21 : gaagtatgttgacggagatcaaaaaacatcttttttttccgaatgatttgtttttcctagtgaggagtatctctccaatggaatttctaaaactgtcaaacattttgccgaaacacgcccagaggtgcggtaataacggtcattactcttaactcctgagaggaatgtagtagtaAAAA-AA-GT----GAAAAGGGGG-GTTTT--TCACAAA----------GT--TTTC-T-ATTCATTGCAAA-TTTTT---GTC-CA---AAAACAA-TCTCGTTTGATGAGTGA-AA-AT-TGCT-AACTG-TGAATAC-----C--AAAAATGTTGTTTAT--TCA-T-TTTTCC----------------GG-GAAT---GA---------TTTT---TTT-------------TT-AT---TCCATTGG-AATTT------CCAAACT-TCA---AT-TTT--G-TGAAA-ACGCCCTTTGGTCATACTA-AAA-AAAAT-TAAAATATCATTT-ATGA---AT-GAAA-ATGAAGTTTGCAACACAGT--G---T--AAGACAT-GCATGTT--TA--GATTTT-TTGA-----ATT----------agtaaa
gi|22 : GTA-AA--A---AAGGTTTA-ACAACAA----A----------AGGTTGAA---AAATTGT---A-TA-CGCCTTCCAAATGC-AAAATGT---GAA--CA-TATTTATCACT-CTTAG-AA-T------------GA--TTTC-----GATA---AC--GATTTTT---G-TTTAATACAGTCATCAAT-TTT-AGAA--C-GGAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGCTTAA----A-AA-AAAAT-A-----GCCCCCCCCCC-TAAA--AAAA-GA-GT----GAAAA--AAATGTTTT--TCAAAAAAA---T--GTGT--TTTCCA-ACTCATTGCTAA-TT
gi|24 : ataccgaA-GA-AT----GAAAAACGGA-GTTTT--TGACGAAAA-TGC--GTGT--ATTCC--ATTCATTGCTAA-GTTTT---G-C-CA---AAA---A-TCTCGTTTGATGAGTGG-AA-GC-TGCT-AACCG-GGGATAT-----C--AAAAATGTTTTTTAT--T-A-T-TTTATT----------------GC-GAAT---GAA-------TTTTT---TTCCCTA-TGG-ATAGTTAAT---TCCACTGG-AATTT------TCAAACT-TCA---AT-TT
gi|27 : TGCTG-AAA-AAA-T--AAAAC---------------AC-GAAA-ATTAAGTTTGAAACACAGT--G---T--AAGACAT-GAATGTT--TA--GATTTT-TTGA-----ATT----------T--TTACAA---TT--TTCA-A--TATTTTTAA---GA-G-GT---C--AA-AAA-TTG--TTGCTAAA-A-AGT---TTTTACTCAGTA
gi|28 : gC-GAAT---GAAT-----TTT------TTTCCTA-TGG-AGAGTT-AC---CCCAATGG-AATTT------TCAAACT-TCA---CT-TTT--G-CGAAA-AC-CCCTTTAGTCATACTG-AAACAAA-T-TAAGATGTCCTTT-ATGA---AT-GACA-AT
gi|29 : TTTT----------------GC-GAAT---GA-T-----TTTTAT---TTTCCTA-TGA-AGGGTT-AT---TCCATTGG-AATT-------------------------TT--G-CGAAA-ATGTCCATTAGTAATACTG-AAA-TAA-T-TCAGATGTCATTT-ATGA---AT-GAAA-ATTAAATT
gi|30 : TG--TTGCTAAA-CTTTT---TTTTACTCA
gi|30 : A-AA--A---AAG-TTTA-GCAACAA----A-----------GGTTAAA-------TAT---AATA-CGCTTTTCAGAGGCAAAAATATATATAG--CA-TA-TTATCACT-CTTAGAAA-T------------GATTTTTT-----GATG---ACCGGATTTTaaggttaaatataatacgcttttcagaggcaaaaatatatatagcatattatcactcttagaaatgattttttgatgaccggatttt
gi|31 : tgagtaa--CA-TATTTATCACT-CTTAA-AA-T------------GA--TTTA-----AACA---AC--TATTTTC---G-TTTAAAACAATCGTAAAC-TTT-AAAA--C-GAAGGA--TTCTTTT-TCCT------G-T-TGC----C-TCTT--TGGC--AT----A-AA-AAA
gi|34 : GG-AGAGTT-AA---TCCATTGG-AATTT------TCAAGCT-TCA---AT-TTT--G-C-AAA-ACGTCCTTTGGTTATGCTG-AAA-AAA---------------T-ATCA---AT-GAAA-ATTAAGTTTGAAACACAG
gi|35 : g--AAGACAG-GCATATT--TAA-GATTTT-TTGA-----ATG----------T--TTACAA---TT-CTTAA-A--TATTTTGAA---GA-G-TT---T---A-AAA-ATG--TTGCTAAA-C--------TTTACTCAGT
gi|36 : ATTTTATTGT-----ATT----------T--TTACAA---TT-GTGAA-A--TATTCTCAA---GA-G-GT---C--AC-AAA-ATG--TTGCTAAAGT-TTT---TTTTACTCAGT
gi|37 : TT-AACA---AT-GAAA-ATTAAGTTTGAAACACAGT--GTATT--AAGACAT-GCATGTTGCTA--AACTTT-TT--------TT----------T--T
gi|38 : atgTT----------T--TTACAAATTTT-GTGAA-A--TATTTTCAA---AA-G-GT---TTTAA-AAA-AAG--TTGCTAAA-C-TTG---TTTTCCTCAGTAgct
gi|39 : -AA--A---ACG-TTTA-GCACCAA----A----------AGGTTAAA---AAAT-AT---A-TG-CGCTTCTCAGAAGC-AAAATGT---TTATGCA-TATta
gi|42 : TG--TTGCTAAA-C-TTT---TTTTACTCAaat
gi|42 : ataaaA-AA--A---AAG-TTTA-GCAACAA----A----------A-GTT--A---AAATTAT---A-TA-CTCTTTTaaagttaaaattatatactctttt
gi|43 : ataaatgagtaG--TTGCTAAA-C-TTT---TTTTAATCA
gi|43 : A-AA--A---AAG-TTTA-GCAACCA----A----------AGGTTGAA---AAATTAT---A-caaaggttgaaaaattata
gi|44 : tgattaTG--TTGCTAAA-C-TTT---TTTTACTCAGTA
gi|44 : A-AA--A---AAG-TTTA-GCAACAA----A----------ACGTTGAA---AAAaaacgttgaaaaa
gi|6 : tactgagtaTA-AA--AC--AAG-TTTA-GCAACAA----A----------AGGTTAAA---AGATTAT---A-TA-CGCTTTTCAGAGGC-AAAATGT---TCG--CA-TATTATTCACT-TTTAG-AA-T------------GA--TTTT-----GATG---AC--GATTTTC---G-TTTGAAACAACCATCAAC-TTT-AAAA--C-GAAGCA--TTGCTTT-TTTT------A-T-TGT----C-TTTT-CTGGC--AT----A-GA-AAAATGA-----G-------TC------GGAAAA-AA-GT----GAAAA---------------------A-TGT--GTGC--TTTTCT-ATTCATTGCAAA-TTTTT---G-T-GA---AAAA--A-TCTCGTTTGATGAG-GG-AATTT-TGCT-AACTG-GGGATACA----A--AAAAATGATGTTTAT--TCA-T-TACTTT----------------GC-GATTGCGGAATTGGAATTTTTT---TTTCCTA-TGGAAGAGTT-AA---TCCATTGGAAATTT------TCAAACT-TCA---AT-TTTTGG-CGAAC-ACATCTTATGGTTATACTGAAAA-AAA-T-TAAGAT-TCATTTAATTT---ATGGAAA-ATTAAGCTTGAAACACAGTGGG---TAAAAGACAT-GCATGTT--TA--GA-ATT-TTAA-----ATTTTTTTTTGTGT--TTACAA---TT-GTGAA-A--TCTTTTCAATTTAATGCGT---A--AA-AAG-AAGGTTTGCTTCA-C-ATGACATTTTACTCAG
gi|9 : tgaaGTA-AA--ATAGAAG-GTTA-GCAACTA----A----------ACGTTAAA---AAATCAT---A-TG-CGCTTTTCAGAGGC-AAAATGT---TAA--GA-TATTTATCACT-CTTAG-AA-TGATTTTGATGACGA--TTTTCGTTTAATAGAAAC--GAATGTCTGGA-NNNNNNNNNNNNNNNNNN-NNN-NNNN--N-NNNNNN--NNNNNNN-NNNN------N-N-NNN----N-NNNN-CTAGC--AT----A-AA-AA--TGA-----G-------CTC-TAAAAGAAAA-AAAGT----GAAAAAGGGA-GTTTT-----CA---------------------T-ATTCATTACTAA-TTTTT---G-C-CA---AAAG--A-TTTCGTTTGATGAGTGG-AA-GT-TGCT-AAAAG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-TTTTTTTTTTTTTTTTTTTTTGGC-GAAT---GGAC-----ATTTTT---TA-CCTC-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCTAACT-TCA---GT-TTT--G-CGAAA-GCGTTCTTTGGTTATACTG-AAA-AAA-T-TAAGATAGCATTT-ATCA---AT-GAAA-ATTGAGTTTGAATCACAGT--G---T--AAGACAG-GCATATT--TA--TATGTT-TTTA-----ATT----------T--TTACAA---TT-GTGAA-A--TATTTTCAA---GA-G-GT---C--AA-AAA-ATG--TATCTAAA-C--TT---TTTTGCTTGGTAgtatacgtcatcatatacgtataaagtagcagaatgatcatgatatttgtaacaggtgtctaaggtcataataacaaaataattaaacaatgctaaactttttaaaaaataaatttga
blockSeqs : C GA TAG G T TCAA TAAAATTTAA TAA . A A A ATA TG A G A A GATTTTGATGAC TT CGTTT GAA CG TGG T A A A AT A GT A TTTTTG T G ACAG T A TT TTTC G T GCCCCCCCCCCTA T A TCCA AGGGAGTTTTCCCCC A . GG TA A T TAA T T CGG ACA T T C T A A T AAAAAA C TG T G TTTTTTTTTTTTTTTG G GCG ATTGGAAT AAA T G A A CTC A AAACAC G AAC A TG C C G A C A T G A GAT G G GG TAT AA T GC TT A ATTTTT TTTTTTTGTG AA ATT TG T AC TTT T C AAAA . T GT G TT ACA
blockSeqs : . . C . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . TAACGACCCGGA . . . GGGGAGTTTTTCA A . . . . . . . . . T . T . T . . . CTA T A . . . . . ATT . T . . . . . C . . . . . . A . . . T G . . . . . . . . . A . GA . . . G . . . . . TTT . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . GCCCGT . . . GGGGAGTTTTTCA A . . . . . . . . . A . T . T . . . AA G . . . . . . ATT . T . . . . . . . . . . . . A . . . T G . . . . . . . . . . . GC . . . G . . . . . T . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . ACCCGA . . . GGGGGGTTTTCAA A . . . . . . . . . A . T . . . . . A A . . . . . . ACA . T . . . . . . . . . . . . A . . . G T . . . . . . . . . . . GT . . . G . . . . . C . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . GCCCGA . . . GGGGGGTTTTTCA A . . . . . . . . . A . T . . . . . C G . . . . . . TT . T . . . . . . . . . . . . G . . . T G . . . . . . . . . . . GA . . . C . . . . . C . . . . C .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . GCTCTA . . . ACGGAGTTTTTGA A . . . . . . . . . A . T . . . . . A A . . . . . . CT . T . . . . . . . . . . . . G . . . T A . . . . . . . . . . . GA . . . G . . . . . C . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . CCCGA . . . AAATGTTTTTCA A . . . . . . . . . A . T . . . . . C G . . . . . . TT . T . . . . . . . . . . . . G . . . T G . . . . . . . . . . . GA . . . G . . . . . T . . . . A .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . GTC . . . AGGGAGTTTT A . . . . . . . . . A . T . . . . . C A . . . . . . A . C . . . . . . . . . . . . G . . . T G . . . . . . . . . . . GT . . . G . . . . . C . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . GTC . . . GTG . . . . . . . . . . A . . . . . . . C G . . . . . . T . T . . . . . . . . . . . . A . . . T A . . . . . . . . . . . AA . . . G . . . . . A . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . GC . . . . . . . . . . . . . . G . . . . . . . C T . . . . . . A . T . . . . . . . . . . . . G . . . . . . . . . . . . . . . . TA . . . . . . . . . C . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . C G . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . N . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqCons : *** AT****** T*
originalCons : GTA-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGC-AAAATGT---TAA--CA-TATTTATCACT-CTTAG-AA-T------------GA--TTTT-----GATA---AC--GATTTTC---G-TTTAAAACAACCATAAAC-TTT-AAAA--C-GAAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGC--AT----A-AA-AAAATGA-----G-------CCC-GAAAAGAAAA-GA-GT----GAAAAGGGGA-GTTTT--TCACAAAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---AAAA--A-TCTCGTTTGATGAGTGG-AA-GT-TGCT-AACTG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-TTTTTT----------------GC-GAAT---GAAT-----TTTTTT---TTTCCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCAAACT-TCA---AT-TTT--G-CGAAA-ACGTCCTTTGGTTATACTG-AAA-AAA-T-TAAGATGTCATTT-ATCA---AT-GAAA-ATTAAGTTTGAAACACAGT--G---T--AAGACAT-GCATGTT--TA--GATTTT-TTGA-----ATT----------T--TTACAA---TT-GTGAA-A--TATTTTCAA---GA-G-GT---C--AA-AAA-ATG--TTGCTAAA-C-TTT---TTTTACTCAGTA
finalCons : GTA-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGC-AAAATGT---TAA--CA-TATTTATCACT-CTTAG-AA-T------------GA--TTTT-----GATA---AC--GATTTTC---G-TTTAAAACAACCATAAAC-TTT-AAAA--C-GAAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGC--AT----A-AA-AAAATGA-----G-------CCC-GAAAAGAAAA-GA-GT----GAAAAGGGGA-GTTTT--TCACAAAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---AAAA--A-TCTCGTTTGATGAGTGG-AA-GT-TGCT-AACTG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-TTTTTT----------------GC-GAAT---GAAT------TTTTT---TTTCCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCAAACT-TCA---AT-TTT--G-CGAAA-ACGTCCTTTGGTTATACTG-AAA-AAA-TT-AAGATGTCATTT-ATCA---AT-GAAA-ATTAAGTTTGAAACACAGT--G---T--AAGACAT-GCATGTT--TA--GATTTT-TTGA-----ATT----------T--TTACAA---TT-GTGAA-A--TATTTTCAA---GA-G-GT---C--AA-AAA-ATG--TTGCTAAA-C-TTT---TTTTACTCAGTA
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): ATTTGACCACCAGTTTTCAAGAAATTTAAGTATTGTTTAAAAAGCCCCTTTTATCAGAAATAATTAAATCAAAGTACTGACAGTACTGATAGACGGTGGCGTGGATTTGGAATAGCTGAGCTAAGGCTGCAAAAGTCACTACCAATCAATTTATTGTAATAAACTGTGTATATACAGAGTATTGAGATATTGCATGTATATGAAAGCAAAAGTATTATTTTGGCATATTTTATTAAAATGCAATTGCAAAAGGAACGTAAAGTGGTGTGCACGTTAACTAACAAAATGGACATTTATCAGTCATATAAATTAAAGAATGAATTGAAAGTGAACATAAAATATGTCATTTGTAACATTGAAGAAATATGTTCTCCTTTCTATATTGTAAATTTTGAATGATAGTCAACCAAAATACCTTTTACATACACGAGCAGTACAGCCATCATCGCTATTATAATAGCATCCAGTAAACATAAAAAAAACTATCAGATCATATCACAACAAATAAACACAATGCAACGAGTTTCTATCATGTCTACAGAATGAGTCAGAGGTAGTTGGTGATGGGCCTGTAAATGGTAATATTCGCCTAAAAACTTTAATTTCAAAGTTAAAATCTTGACACATTCATACCCACGGCATGAAACATCACTGGGAAAGGAAGCGCCTTTCCACAATAGTGGCTTCCATTTCAATATGTGAGAATTCTGAGATGTCGCTAAATCTTTGTAACTGTTCACCTATCAAAGTAATGTCCACAACAAAGTCTTTATAAACTCCAATTTCTTCCACACAGACTTCGCATGTTGTGCCTCCAACTGTCCAGAAAATTCTCTTTCCATTGGCTGGGTCTTCTGCATGATAAATATTAATTACGAAAAATTGTTTACATTTAAAATGTTGAGTGTTTGGCGAAGGATCTACCAATAATAAATCAAACACTCTACTAGT
Unaligned ( gi|2 ): AATCAAAGTACTGACAGTACTGATAGACGGTGGCGTGAATTCAGAAAAACTAAGCCAAGGCAGCAAAAGTCACTACCAATGGATTTATTGTGTAAACTGTGTATTGACAGAGTATTGACATATTGCATGTTTATAAAAACAAAAGTATTATTTGGTTTTAAAAGAAATTGCAGGAGGAACGTATGATATGGCGTTCAAGTAAACAAAATGGGCAGTCATAATTATAAGGTAAAAATTCAATTGAAAGTGAACATAAAACATATCATTTGTAATATTGTAGTTTACATTTAATACTACCGGTAATTTTAAGTCAGACAGATTCTACTTTGTATATTGTAAAGTATTTTCTGTACAAGGCATCGTCGTTATAGCATTCAGTAATTGAATAACCCCCCAACCCCCTCAAAAAAAAACCCAAACAATCACATCATATCACATAACTGAACAGTAAAATAGAGCAAAGGGAGATCAGCCGCTTAAAATTTAAGCAACAAATATAACGAATATCTATCATGTCTTCAGAATGAACTATCCTAAGAATTAAGTCAATGGTAGTTGGTGATTGGCCTATGGAATGGCAATGTTTGACTACAAATTTCAATATTCGAGAATTCTTAGATGTCACCAAATCTTTGTAACTATTCACGTATCAAAGCAATGTCCACAACAAAGTCTTTATAAGCTCCATTTTTTTCCACAGATTTCGCATGTTGTATCGCCAAAGGAGATTGCCTCCAATGTCCATAAATTTCTCTCTTACACATGATAAATATTAATTACGAAGAACTGTTTACATTTAAAATACTGAGCGAAGGAGTTATATCTACCTTTATTTATTGCAGCCATAGCACAAGTGACGCTCAAACTTGCAAACACTCTACCAGTGGTTCACTCTGTTACCTCACCGGTTTTTTTTTTTATGAATATAACAAGTACAGA
Unaligned ( gi|3 ): ATATATCAAAGTACTGATAATACTGATAGACGATGGCGTGGATTTGGAAAAGCTGAGCTAAGGCTGCAAAAGTCACTACCAATCAATTTATTGTCATAATCTGTGTATATATAGAGTATTGAGATATTGCATGTATATGAAAGCAAAAGTATTATTTTGGCATATTTTATTAAAATGCAATTGCAAAAGGAACGTAAAGTGGCATGCACGTTAACTAACAAAATGGACACTTATCAGTCATATAAATTTTAAAAAAATGAATTGAAAGTCAACATAAAATATATCATTTGTAACATTGAAAATTATGTCCTCCTTTCTATATTGTAAATTTTGAATGATAGTCAACCAAAATACCTTTTACATTTACAAGCAGTACAGGCATCCAGAGAAGTAAGCTTGCATCCCCTGTTGACATCCAGTAAACNNNNNNNNNNNNNNNNNNNNNNNNNAATAAAAAAACAAACAAACAACAAACAAAAAAACTATCAGATCATATTACAACAAATAAATACAATGTAACAGTATCTATCATTCTACAGAAAGTCACATATTGTGATTGTACTAATGGCAATATTCGCCTAAAAACTTTCAAAGTCAAATCTATGCATACCCACGCATTAAGCTTTCACTGAAAGAAGCCTTTCACAATAGTGTTCCATTTCAAATTTTGAATTCTTGAGATGTCCTAAATTTTTAAACACTTCACCTATCAAATAATTATTTCCACAACAAATCTTATTAAACTCCAATCTCTTCCACACAGACTCGCATGCT
Unaligned ( gi|4 ): AATCAAGTACTGATAGACGGTGGCATTGGATATATGGAAAAACATTAAAATATTCATTTATATTTAAAGAAATATGTTCTCCTTTTATATAGATGTAAATTTTGAAGGATAGTATACCAAAATACCCTTTTTACATTTAATGTACAAGCAGTTAGCATCATACGCTATACAGTAAACATTAAAAACAAATCTATCAGATCACATTACAACAAATGAACACTGTAACGAATACCTATCCATGTCTACAGATAACGTATCCAATTAAAGTCAATGGAAGTTGGTGATGGGCCTATAGAATGGCAATTCGACTTTACAAACTTCCAAATTTGACACATACATATGAAGCTTCCCCACGGGAAGCTTCACTGGGAAAAGGAAGTCTATTCCACAATAGTGTCTTCCATTTTCAATATGTCGGAATTTTTGAAGATGAGCTCGCTAAAAATCTTATGTAACTGTTTCATCGTATTCAAAAATAATATTCAAAACAAAGCCTTTATTAAAGTCAATCTCTTCCACACCGACTTCGCACATGTTTAATCTGTGTCGCCAATAGGAGATTGCTTCCAACCTAAGAAAATTATTCTTCCATTGGCTGGGTCTTCTGCATGATGCGATCATTAATTACGAAGAATTGTTTAACATTTAAAATGTTGAGCGTTTCGGCGAAGGAGGCCGAAAGATACCAGTAACAAGCAAACACATCTGCTAGTGAATTCCCTGCGTTGAAATACACCGATTTTTTCGATAAATATA
Unaligned ( gi|5 ): AATCAAAGTACTGACAGTACTGATAGACGGTGGAGTCAACATAAAATATTTCATTTGTAACATTAAAGAAATATGTTCTCCTTTGTATAGTATAAATTTTGAAGAATAGTCTACCAAAATACCTTTTACATTTACATGTACAAGCAGTACAGGCATCATCGCTATAGAGGCATCCAGTAAACATAAAAAAAATCTATCAGATCACATTACAACAAATGAACACTGTAACGAATACCTATCATGTCTACAGAATGAACTATCCCAAGAATTAAGTCAATGGAAGTTGGTGATGGGCCTATGAATGGCAATAACTTCAAATCTTGACACATTCACATCCACGTACGGTATGAAGCTTTACTGGGAAAGGAAAACTTCCACAATAGTGTCTTCCATTTCAATATGTGAGAATTCTGAGATGTCGCATAAAATATTTGTAACTGTTCATGTATCAAAGTAATGACCAAAACAAAGCCTTTATAAAGTCCAATATCTTCCACACCGACTTCGCATGTTGTGTCGCCAATAGGAGATTGCAATTGCCTCCAACTGCCCAGAAAATTCTCTTTCCATTGGTTGGGTCTTCTGCATGATATATATTAATTACGAGAATTGTTTACATGTATATTTAAAATGTTGAGCGTTTGGCGAAGGAGCTACAGTAACAAGCAGACACTCTGCTAGTGATTCCCTGCGTTAACTCGCCGCTTTTTCATAAA
Unaligned ( gi|7 ): GCTAAGCGCCAGCAAATTTTCACCTACCCAATCAATCTTTATGATATAAAACAGGTATATATACAGAGACAAATACTGAGGCTATCTGCATGTTTTATTTATTACTTGTGATATGCACGATACCGCCATTAATGTGGCGTTCATCAGTAAACACATAAGAGCATCTTATCAGCATATAAGTTAAAATAATTCAATTTAAAGCGAATATCAAACATCTCATTCCTGTAACAGTAATAACATTTCAATCACTTACCGGGTCGTAATTACATCAATACAGAAATTTACCTTGTCATATTAAAAGATTTGAAAGAATAGTCAATCAAAACATACTTTTTATTTTATGCTACAAAGCAGCACAGGCCATCATCATTAATCCAGTTTAATGAACTAAAAAAACAGAACAAACAAAAAACCAAAACCCAAACGCTCTTGACCTGAATCACTATTATGTTAACAATAATCTTATCCATGTCTACAGAACATAAAACCTTACTAAAGATTAGTCATATGATAGCTTTGGTACTTGCCTATGATTACCAACTGATCGTACCAACAAACTATCAATGTTTCAGACGCTCACGGAAAGAAAAACCTCTCCACAATACCGTGTCTTTTCCCATTTCAATATTCAGACTTCCTTAGATGCCGCCAAATCAATCGTTAGCCTGTT
Unaligned ( gi|8 ): ATATGTTCTCCTTTGTATAGTGTAAATTTTAAAGGATAGTCTATCAAAATACCTTTTACATTTACATATACAAGCAGTACAGGCATCATCGCTATAGAGGCATCTAGTAAACATAGTAAACATAAAAAATCTATCAGATTACATTACAACAAATGAACACTGTAACGAATATCTATATCATGTCTACAGAATGAAGTATCCCAATAATTAAGTCAATAGAAGTTGGTGATGGGCCTATGAATGGCAATATTCGACTACAAACTTCAAATCTTGACACATTCACACCCACGTACGGTATGAAGCTTCACTGGGAAAGGAAGCCTTTCCACAATAGTGTCTTCCATTTCAGATGTCGCATAAAATCATGTATCAAAGTAATGACCAAAACAAAGCCTTTATAAAGTCCAATCTCTTCCACACCGACTTCGCATGTTGTGTCGCCAATAGGAGATTGCAATTGTCTCCAACTGCTCGGATGATTCTCTGTCCCTTGGCTGGGTAGTCGGCATGATATCTATTGATTACGAAGAATTGTTTATATCTAAAATGTTGAGCGTTTGGCGAAGGAGCTACCAGTAACAAAGCAGACACTCTGCTAGTGATTCCCTGCGTTAACTCACCGTTTTTTCAT
Unaligned ( gi|23 ): AATCAAAGTACTGATAAACGGTGGCTTAGATTTGGAAAAGTCAACATAAAATATTTCATTTGTAACATTGAAGAAATATGTAGTGCTTTGTATAGTGTAAATTTTGAAGGATAGCCTACCAAAATACCTTTTACATTTACATGTACAAGCAGTACAGGCATGATCGCTATAGAGGCATCCAGTAAGCATAAAAAAACCTATCAGATCACATTACAACAAATGAACAC
Unaligned ( gi|25 ): CAAAGTAGCTGGCCTTAAGTATTGATAGACGGTGAGTCAAATTTTACAATATTTTGTCAATGTAGCAATATTTGATATGTTTCTAAATTTGTTGGGTCATAATTGTCTAGAATAGTGATATTAAATTAACATATACGCACAAGCAGACAGCAT
Unaligned ( gi|26 ): AATAACAAAGTACTGGACAGTACTGATAGACGGCTGGCGTTGAATTCAGAAAAAAACTAAGCCAAGGCAGCAAAAGCACTACCAATGGATTTATTGTCGTAAACTGTGAGTTGGTTAAATTGATCAGCATTTTTA
Unaligned ( gi|32 ): TACAGAATGAACTATACTAAGAATTAAGTCAATGGTAGTTGCTGATTGGCCTATGAATGGCAATGATCGACTACAAACTTTCAATGTTCATGACGCTTCAC
Unaligned ( gi|33 ): AAGACAATATTCGCTTGCAAACTTTCAAAGTTCAAATCTTGACACATTCATACCCACGGCATGAAGCTTCACTGGGAACGGAAACCTTTCCACGATAAA
Unaligned ( gi|40 ): TTGGCGAAAGGAGTTACCATTAACAAAGCAGACACTCTGCTAGTGATTCCCTGTGTTAACTCAC
Unaligned ( gi|41 ): TAAATCAAAGTACTGATAGTACTGATAGACGGTGGCGTGGTTGTGAAAAGTTTAGCTAAGGTGG
Unaligned ( gi|45 ): TAATCAAAGTACTGACAATACTGATAGACGGTG
Unaligned ( gi|46 ): GAATTCTGAGATGTCGCTAAATCTTTGTAAC
Alignments
lowQualScore : 111111111111 1111111111111111111 1111111111111111 11111111 1111111111111111 1111 111111 1111111 1111111111 111111
lowQualScore : 2 33 666 2 2 4444 9999999999 333 444 2 2 2 444 33 2 2 2 2 333333333333 33 66666 444 33 555 2 1 2 2 33 2 33 2 888888 2 2 6666 2 2 33 6666 2 2 9999999999999999999 2 2 6666 2222222222222222 0 1 2 33 33 2 0 2 555 3 3 555 555 3 5 2 8 2 3 0 3 22222222 3 66 2 2 33 5555 7777777777777777 5 33 7777 444 2 2 2 444 2 000000 2 555 2 44 3 3 2 3 3 3 44 4 2 555 2 2 55 666 44 3 44 77 3 1111111 2222222222 44 555 33 3 44 555 3 3 000000 3 3 33 2 77 333
lowQualScore : . .. ... . . .... .......... ... ... . . . ... .. . . . . ............ .. ..... ... .. ... . . . . .. . .. . ...... . . .... . . .. .... . . ................... . . .... ................ . . . .. .. . . . ... . . ... ... . . . . . . . . ........ . .. . . .. .... ................ . .. .... ... . . . ... . ...... . ... . .. . . . . . . .. . . ... . . .. ... .. . .. .. . ....... .......... .. ... .. . .. ... . . ...... . . .. . .. ...
lowQualScore : 2 11 111 2 2 7777 7777777777 999 111 4 5 7 777 44 5 7 7 7 777777777777 77 77777 777 77 000 9 4 9 9 99 9 99 9 222222 9 9 1111 9 9 99 1111 9 9 9999999999999999999 9 9 1111 4444444444444444 7 4 9 99 99 9 3 9 444 1 1 444 999 1 3 9 6 9 1 9 1 44444444 2 33 7 9 99 7777 7777777777777777 3 77 7777 777 9 7 7 777 7 333333 9 000 9 22 1 1 6 3 3 3 66 0 9 000 9 9 00 444 66 3 66 99 1 1111111 5555555555 22 888 88 3 66 888 3 3 333333 6 3 11 2 88 999
consensus : GTA-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGC-AAAATGT---TAA--CA-TATTTATCACT-CTTAG-AA-T------------GA--TTTT-----GATA---AC--GATTTTC---G-TTTAAAACAACCATAAAC-TTT-AAAA--C-GAAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGC--AT----A-AA-AAAATGA-----G-------CCC-GAAAAGAAAA-GA-GT----GAAAAGGGGA-GTTTT--TCACAAAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---AAAA--A-TCTCGTTTGATGAGTGG-AA-GT-TGCT-AACTG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-T--TTT----TT----------------GC-GAAT--GAA-TTTTTTT---TTCCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCAAACT-TCA---AT-TTT--G-CGAAA-ACGTCCTTTGGTTATACTG-AAA-AAA-T-TAAGATGTCATTT-ATCA---AT-GAAA-ATTAAGTTTGAAACACAGT--G---T--AAGACAT-GCATGTT--TA--GATTTT-TTGA-----ATT----------T--TTACAA---TT-GTGAA-A--TATTTTCAA---GA-G-GT---C--AA-AAA-ATG--TTGCTAAA-C-TTT---TTTTACTCAGTA
Reference ( family-3185 ) : GTA-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGC-AAAATGT---TAA--CA-TATTTATCACT-CTTAG-AA-T------------GA--TTTT-----GATA---AC--GATTTTC---G-TTTAAAACAACCATAAAC-TTT-AAAA--C-GAAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGC--AT----A-AA-AAAATGA-----G-------CCC-GAAAAGAAAA-GA-GT----GAAAAGGGGA-GTTTT--TCACAAAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---AAAA--A-TCTCGTTTGATGAGTGG-AA-GT-TGCT-AACTG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-T--TTT----TT----------------GC-GAAT--GAA-TTTTTTT---TTCCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCAAACT-TCA---AT-TTT--G-CGAAA-ACGTCCTTTGGTTATACTG-AAA-AAA-T-TAAGATGTCATTT-ATCA---AT-GAAA-ATTAAGTTTGAAACACAGT--G---T--AAGACAT-GCATGTT--TA--GATTTT-TTGA-----ATT----------T--TTACAA---TT-GTGAA-A--TATTTTCAA---GA-G-GT---C--AA-AAA-ATG--TTGCTAAA-C-TTT---TTTTACTCAGTA
gi|10 : GTA-AA--A---AAG-TTTC-GCAACAA----A----------AGATTGAA---AAATTATTATA-TA-TGCCTTTCAGAGGC-AAAGTGT---TCA--CA-CATTTAATACT-CTTAG-AA-T-------------A--TCTT-----AATA---GC--AATTTTC---A-TTTAACACAACCATAAAC-TTT-AAAA--C-GAAGGA--TTATATT-TCCT------G-T-TGC----C-TTTT-GTAGC--AC----C-AA-AAAATGA-----G-------CCC-GAAAAGAAAA-GA-GT----GAAAAAGGGA-GTTTT--TCACAAAAAATGT--GTGT--TTTCCT-ATTCATTACTAA-TTGTT---A-C-CA---AAAA--A-GCTCGTTTGATGAGCGG-CA-GT-TGCT-AACTG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-A--TTT----TT----------------GC-GAGT--GAATTTTTTTT---TTCCTA-TGG-AGAGTT-AT---TGCATTGG-AATTT------TCAAACT-CTA---AT-TTT--G-CGAAA-ACGTCCTATGGTTATACTG-GAA-ACA-TAAAAGATGTCATTT-GTCA---AT-G-AA-ATTAAATTTAAA--ACAGT--G---T--AAGACAT-GCATCAT--TG--GATTTT-TTTA-----ATT----------T--TTACAA---TC-GTGAA-A--TATTTTCAA---GA-G-GT---C--AAGAAA-ATG--TTGCTAAA-C-TTT---TTTTTCTCAGTA
gi|11 : GTACAA--A---AAA-ATTA-GCAACAG----A----------AGGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGC--AAATAC---TAA--CA-AATTTATCACT-C--AG-AA-T------------GC--TTTT-----GATA---AT--GATTTTT---GTTTTAAAATAACCATAAAC-TTT-AAAA--C-GAAGGA--TTG--CT-TCCT------G-T-TGC----C--TTT-CTAGC--AT------AA-AATATTA-----G-------CCC-GTTAAGAGAA-GG-G---------------------------------TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---T-C-CA---AAAT--T-TCTCGTTTGATGAGTGG-AA-GT-TGCT-AACTG-GTGATAC-----A--AAAAATGTTCGTTAT--TCA-T-T--TTT----TT-----------------------------TTTTTTT---TT
gi|11 : actgaTTTTTTTT--TTT-T-T--TTT----TG----------------GT-GAAT--GAA-TTTTTTT---TTCCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCAAACA-TCG---AT-TTT--G-CGAAA-ACGTCCTTTGGTTATACTG-AAA-TAA-T-TAAAATGTCATTT-ATCA---AT-GAAA-ATTAAGTTT---------------------GACAT-GCATGTT--TA--GAATTT-T--A-----ATG----------T--TTACAA---TT-GTGAA-A--TGTTTTCAA---GA-G-GT---T--AA-AAA-ATG--TTGCTAAA-C--TT---TTTTGTTCAGTAtttttttttttttttttttttttttggtgaatgaatttttttttcctatggagagttattccattggaattttcaaacatcgattttgcgaaaacgtcctttggttatactgaaataattaaaatgtcatttatcaatgaaaattaagtttgacatgcatgtttagaattttaatgtttacaattgtgaaatgttttcaagaggttaaaaaatgttgctaaacttttttgttcagtata
gi|12 : actgagtacaaaaaaattagcaacagaaggttgaaaaattatatacgcttttcagaggcaaatactaacaaatttatcactcagaatgcttttgataatgatttttgttttaaaataaccataaactttaaaacgaaggattgcttcctgttgcctttctagcataaaatattagcccgttaagagaagggtgtgtgttttcctattcattgctaattttttccaaaatttctcgtttgatgagtggaagttgctaactggtgatacaaaaaatgttcgttattcattttttttttttttttttttttttTG--TTGCTAAA-C-TTT---TTTTATTCAta
gi|12 : A-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTTAATAAAAATTAT---A----CGCTTTTCAGAGGC-AAAATGT---TAG---------------------G-AA-A------------GA--TTTT-----GATG---AC--GATTTTC---G-TTTGAAACAACCATCAAC-TTT-AAAA--C-GAAGCA--TTGCTTT-TCCT------A-T-TGT----C-TTTT-CTGGC--AT----A-GA-AAAATGA-----G-------C-------GGAAAA-AA-GT----GAAAA---------------------A-TGT--GTGC--TTTCCT-AT-CATTGCAAA-TTTTT---G-T-CA---AAAA----TCTCGTTTGATGAG--G-AATGT-TGCT-A-CTGTGGGATAT-----CTAAAAAATGTT---TAT--TCA-T-T--ATT----TT----------------GC-GAAT--GA---TTTTTT---TTCCTG-TGG-AGAGTT-AA---TCAATTGG-AATTT------TCAAACT-TCA---AT-TTT--G-CGAAA-TCATCCTTTGGTTATACTG-AAA-AAA-T-TAAGATGTCATTT-ATTA---AT-GAAA-ATTAAGCTTGAAACACAGT--G---T--AAGACAT-GCATGTT--TA--GATTTT-TT-ATTTTTATT----------T--TTACAA---TT-GTGAA-A--TATTTTCAA---AA-G-GTAAAA--AA-AAA-AAG--TTGCTAAA-C-TAT---TTTTACTCAGTAaaaggtttaataaaaattatacgcttttcagaggcaaaatgttaggaaagattttgatgacgattttcgtttgaaacaaccatcaactttaaaacgaagcattgcttttcctattgtcttttctggcatagaaaaatgagcggaaaaaagtgaaaaatgtgtgctttcctatcattgcaaatttttgtcaaaaatctcgtttgatgaggaatgttgctactgtgggatatctaaaaaatgtttattcattattttgcgaatgattttttttcctgtggagagttaatcaattggaattttcaaacttcaattttgcgaaatcatcctttggttatactgaaaaaattaagatgtcatttattaatgaaaattaagcttgaaacacagtgtaagacatgcatgtttagattttttatttttatttttacaattgtgaaatattttcaaaaggtaaaaaaaaaaagttgctaaactatttttactcagta
gi|13 : tgaata-ATG--TTGCTAAA-C-TTT---TTTAAATCAGTA
gi|13 : taaagaaaacaaataTA-AA--A---AAG-TTTA-GCAACA---------------------------------------TA-CGCTTTTCAGAGGC-AAAATGT---TAT--CA-TATTTACCACT-CTTAG-AA-T------------GA--TTTT-----GATA---AC--GATTTTT---G-TTTAAAACAACCATACAC-TTT-AAAC--C-TAAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGA--ATTTTCA-CA-AAAATGacgcttttcagaggcaaaatgttatcatatttaccactcttagaatgattttgataacgatttttgtttaaaacaaccatacactttaaacctaaggattgtttttcctgttgccttttctggaattttcacaaaaatgtatttttcctattcattgctaatttttgccaaaaatctcgttagatgagtagaagttgttaactgggaataccaaaactgttgtttattcattttctttcgcttttttaaatttatttatttatttttttcaaacttcaattctgcgaaaacgttatactgaaaaaattaagatgtcatttatcaatgaaaatgtagtttgaaacacagtgtgagaaatgcatgttcagattttttgaattttacaattgtgaaatattttcaagaggtcaaaaatatgttgctaaacctttttcgctcttat
gi|13 : taaagaaaacaaatatactgattTTT--TCACAAAAA-TGT--AT-T--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---AAA---A-TCTCGTTAGATGAGTAG-AA-GT-TGTT-AACTG-GGAATAC-----C--AAAACTGTTGTTTAT--TCA-T-T--TTC----TT----------------TC-G---------CTTTTTTAAATT--TA-T-------TT-AT---T-TATTT----TTT------TCAAACT-TCA---AT-TCT--G-CGAAA-AC--------GTTATACTG-AAA-AAA-T-TAAGATGTCATTT-ATCA---AT-GAAA-ATGTAGTTTGAAACACAGT--G---T--GAGAAAT-GCATGTT--CA--GATTTT-TTGA-----A-T----------T--TTACAA---TT-GTGAA-A--TATTTTCAA---GA-G-GT---C--AA-AAATATG--TTGCTAAA-C-CTT---TTTCGCTCtatttttcctattcattgctaatttttgccaaaaatctcgttagatgagtagaagttgttaactgggaataccaaaactgttgtttattcattttctttcgcttttttaaatttatttatttatttttttcaaacttcaattctgcgaaaacgttatactgaaaaaattaagatgtcatttatcaatgaaaatgtagtttgaaacacagtgtgagaaatgcatgttcagattttttgaattttacaattgtgaaatattttcaagaggtcaaaaatatgttgctaaacctttttcgctcttat
gi|14 : taaagaaaacaaatatactgatttaaaaaagtttagcaacatacgcttttcagaggcaaaatgttatcatatttaccactcttagaatgattttgataacgatttttgtttaaaacaaccatacactttaaacctaaggattgtttttcctgttgccttttctggaaGTA-AA--G---AAA-T----GCAACAA----A----------TGGTTGAA---AAGTTAT---A-TG-CTCTTTTCAGAGGC-AAAATGT---TTA--CA-TACATATCATA-CTTAG-AA-T------------GG--TTTT-----GATA---AT--GATTTTC---G-ATTGAAACAACCATGAAC-TTT-ATAT--C-G-AGGAGTTTTTTTT-TTCTTTTTTGG-T-TGC----CTTTTT-CCGGT--AT----A-AATAATAT---------------CCC-GAAAAGGAAA-GA-GT----ttat
gi|14 : ga--AAGAGTTTTATTTAT--TCA-T-T--TTG----GG----------------GG-GTAT--G-----CTTTT---TTTCAA-TGG-AGAGTT-AT---TCAGTTAG-AATTT------T---------------------G-CGAAA-ACATCCTTTGGGTATACCG-AAA-AAA-T-GAATATTGCATT--ATCA---AT-GAAA-TTTTAGTTTGAAACACAGT--G---T--AGGACAT-GCATATT--TA--GATTGT-TTGC-----ATT----------T--TCACAA---TT--TACATA--TGTTTTCAA---GA-G-G----C--TA-AAA-ATG--TTGCCAAT-C--AT---TTTTGTTCAGTAtttatttattcattttggggggtatgctttttttcaatggagagttattcagttagaattttgcgaaaacatcctttgggtataccgaaaaaatgaatattgcattatcaatgaaattttagtttgaaacacagtgtaggacatgcatatttagattgtttgcattttcacaatttacatatgttttcaagaggctaaaaatgttgccaatcatttttgttcagta
gi|15 : gagtaaagaaatgcaacaaatggttgaaaagttatatgctcttttcagaggcaaaatgtttacatacatatcatacttagaatggttttgataatgattttcgattgaaacaaccatgaactttatatcgaggagttttttttttcttttttggttgcctttttccggtataaataatatcccgaaaaggaGTA-AA--A---ATG-TTTTTGCAATAA----A----------AGGTTGAA---AAATCAT---A-TA-CGTTTTTCAGAGGC-AAAATGT---TAA--CA-TATGTATTACT-CTTAG-AA-T------------GA--ATTT-----GATA---AT--GATTTTT---G-TTTAAAAC-------AAC-TTT-AAAA--C-TAAGGA--TTTCTTT-TCCC------A-T-TTC----C-TTTT-CTGGC--AT----A-GG-AAAATGG-----G-------TC------AGAAAA-GG-GC----AAAAAAGGGA-GTTTTCCCCCCAAAAA-TGT--ATCTTATTTCCT-ATTTTTTGCAAA-TGTTT---G-C-AA---AAAA--A-ATTCGTTTGATG-------A-GT-TGCC-AAACG-GGGATAC-----A--ACAAATAAAGTTTAT--TCCTT-T--TTT----TT----------------GC-GGAT--TA----TTTTT---TTCTTA-TGG-AGAGT---C---TCCA-GGG-AATCTAAACACTCAAAAC-CAA---ATATTT--G-CCAAA-ATATCCT
gi|16 : actgaA-AA--A---AAG-TTTA-ACAACAA----A----------AGATTGAA---AAATTAT---A-TAACGCTTTTCAGAGGC-AGAATGT---TAA--CAATGTTTATCACTGCTT-G-AA-T------------GA--TTTT-----GATA---AC--GATTTTT---G-TTTAAAACAATCATAAAC-TTT-AAAA--C-GAAGGT--TTGTTTT-TCCC------G-T-TAT----C-TTTT-CTGGC--AT----A-AA-AAAATGA-----A-------CCC-GAAAAAGAAA-GA-GT----GAAAAGGGGA-GTTTT--TCAC-AAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAATTTTTT---G-C-CA---AAAA--A-TCTCGTTTGATGAGTGG-AA-GT-AGCTAAACGG-GGGGTAC-----C--AACAATGTTATTTATTGTCA-TGT--TTT----GT----------------GCGGAAT--GAA--TTATTT---TTCCTA-TGG-AGAGTT-AT---TCCATTGG-AATTT------T
gi|17 : actgaataaaGTA-AAGAA---AAG-TTTA-GCAACAATCAAA----------ATGTTGAA---AAATTAT---A-TA-CGCTTTTCAGAGGT-AAACTAT---AAA--CA-TATCTATCACT-CTTAG-AA-T------------GA--TTTT-----GATG---AC--GATTTTC---G-TTTAAAACAACCATAAAC-TTT-AAAT--C-GGAAGA--TTGTTTT-TCCT------G-T-TGT----C-TTTT-CTAGC--AT----A-AA-GAAATGA-----G-------CCC-GAAAAGAAGA-GA-GT----GACAAGGGGA-GTTTT--TCACAAAAA-TGT--GTGT--TTTCCT-ATTCATTGCTAA-TTTTT---G-C-CA---CAAA--A-TCTCATTTGACGAGTGG-AA-GT-TGCT-AACTG-GAGATAT-----C--CAAAATGTTGATTAT--TCA-T-T--TTT----TT----------------
gi|18 : actta-AG--A---AAG-TTTA-GCAACAA----ATAAAATTTAAATGTTGAA---AAATTAT---A----CGCTTTTCAGAGGT-AAACTAA----AA--CA-TATCTAAC-CT-CTTAA-AAAT------------GA--TTTT-----GATG---AC--GATTT-C---G-TTTAAAACAACCATAAACATTT-AAAGATCAGAAAGA--TTGTTTTATCCT------G-TGTGTACAGT-TTTTACCAGC--AT----A-AA-AGATTGATAACGA-------CCCGGAAAAGAAGATGA-GCTCCAGACAAGGGGG-GTTTT--CAACAAAAA-TGTGGGTGT--TTTCCTAATTCATTGCTAA-TTCTTTAAG-CTCACGGAAAA--ATTCTCATTTGACGAGTGACAA-GT-Tttttt
gi|19 : TG--TTGCTAAA-C-TTT---TTTTACTCAGt
gi|19 : A-AA--A---AAG-TTTA-GCAACAA----A----------AGGTTAAA---AAATTAT---A-TA-CGCTTTTCAGAGGC-AAAATAT---TAG--CA-TATTATTCACT-CTTAG-AA-T------------GA--TTTT-----GATC---AC--GATTTTC---A-TTTGAAACAACCATCAAC-TTTAAAAA--C-GAAGCA--TTGCTTT-TCCT------ATT-TGT----C--TTT-CTGGC--AT----AGAA-AAAATGA-----T-------------AGGGAAA------------AAAAGTG--------------AAAAA-TGT--GTGC--TTTCCT-ATTCATTGCAAA-TTTTT---G-T-CA---AAAA--A-TCTCGTTTGATGAG-GG-AATGT-TGCT-AACTG-GGGATACAAAAAA--AAAAATA-TATTTAT--TCA-aaaggttaaaaaattatatacgcttttcagaggcaaaatattagcatattattcactcttagaatgattttgatcacgattttcatttgaaacaaccatcaactttaaaaacgaagcattgcttttcctatttgtctttctggcatagaaaaaatgatagggaaaaaaagtgaaaaatgtgtgctttcctattcattgcaaatttttgtcaaaaaatctcgtttgatgagggaatgttgctaactggggatacaaaaaaaaaaatatatttattca
gi|20 : ctgagtaG-AA-GTATGTT-GAC-G-GAGAT-------C--AAAAA--------ACA-TCT-T-T--TTT----TT----------------CC-GAAT--G-A-TTTGTTT---TTCCTAGTGA-GGAG-T-ATCTCTCCAATGG-AATTTC-----TAAAACTGTCAAACAT-TTT--GCCGAAACACGCCC
gi|20 : GTCATTT-ATCGGATAT-AAAAGAT---GTTGCAAACACAAT--G---C--AA-ACATTGCATCCT--TCTTGGTTTT-TTGT-----ATT----------TAACTACAA---TTTGTGGA-AACTATTTTCAA---GA-G-agaggtgcggtaataacggtcattactcttaactcctgagaggaatgtagtagtagtcatttatcggatataaaagatgttgcaaacacaatgcaaacattgcatccttcttggttttttgtatttaactacaatttgtggaaactattttcaagagagtaaa
gi|21 : gaagtatgttgacggagatcaaaaaacatcttttttttccgaatgatttgtttttcctagtgaggagtatctctccaatggaatttctaaaactgtcaaacattttgccgaaacacgcccagaggtgcggtaataacggtcattactcttaactcctgagaggaatgtagtagtaAAAA-AA-GT----GAAAAGGGGG-GTTTT--TCACAAA----------GT--TTTC-T-ATTCATTGCAAA-TTTTT---GTC-CA---AAAACAA-TCTCGTTTGATGAGTGA-AA-AT-TGCT-AACTG-TGAATAC-----C--AAAAATGTTGTTTAT--TCA-T-T--TTT----CC----------------GG-GAAT--GA----TTTTT---TT-------------TT-AT---TCCATTGG-AATTT------CCAAACT-TCA---AT-TTT--G-TGAAA-ACGCCCTTTGGTCATACTA-AAA-AAAAT-TAAAATATCATTT-ATGA---AT-GAAA-ATGAAGTTTGCAACACAGT--G---T--AAGACAT-GCATGTT--TA--GATTTT-TTGA-----ATT----------agtaaa
gi|22 : GTA-AA--A---AAGGTTTA-ACAACAA----A----------AGGTTGAA---AAATTGT---A-TA-CGCCTTCCAAATGC-AAAATGT---GAA--CA-TATTTATCACT-CTTAG-AA-T------------GA--TTTC-----GATA---AC--GATTTTT---G-TTTAATACAGTCATCAAT-TTT-AGAA--C-GGAGGA--TTGTTTT-TCCT------G-T-TGC----C-TTTT-CTGGCTTAA----A-AA-AAAAT-A-----GCCCCCCCCCC-TAAA--AAAA-GA-GT----GAAAA--AAATGTTTT--TCAAAAAAA---T--GTGT--TTTCCA-ACTCATTGCTAA-TT
gi|24 : ataccgaA-GA-AT----GAAAAACGGA-GTTTT--TGACGAAAA-TGC--GTGT--ATTCC--ATTCATTGCTAA-GTTTT---G-C-CA---AAA---A-TCTCGTTTGATGAGTGG-AA-GC-TGCT-AACCG-GGGATAT-----C--AAAAATGTTTTTTAT--T-A-T-T--TTA----TT----------------GC-GAAT--GAA--TTTTTT---TCCCTA-TGG-ATAGTTAAT---TCCACTGG-AATTT------TCAAACT-TCA---AT-TT
gi|27 : TGCTG-AAA-AAA-T--AAAAC---------------AC-GAAA-ATTAAGTTTGAAACACAGT--G---T--AAGACAT-GAATGTT--TA--GATTTT-TTGA-----ATT----------T--TTACAA---TT--TTCA-A--TATTTTTAA---GA-G-GT---C--AA-AAA-TTG--TTGCTAAA-A-AGT---TTTTACTCAGTA
gi|28 : gC-GAAT--GAA-TTTT--T---TTCCTA-TGG-AGAGTT-AC---CCCAATGG-AATTT------TCAAACT-TCA---CT-TTT--G-CGAAA-AC-CCCTTTAGTCATACTG-AAACAAA-T-TAAGATGTCCTTT-ATGA---AT-GACA-AT
gi|29 : TT----TT----------------GC-GAAT--GAT-TTTTATT---TTCCTA-TGA-AGGGTT-AT---TCCATTGG-AATT-------------------------TT--G-CGAAA-ATGTCCATTAGTAATACTG-AAA-TAA-T-TCAGATGTCATTT-ATGA---AT-GAAA-ATTAAATT
gi|30 : TG--TTGCTAAA-CTTTT---TTTTACTCA
gi|30 : A-AA--A---AAG-TTTA-GCAACAA----A-----------GGTTAAA-------TAT---AATA-CGCTTTTCAGAGGCAAAAATATATATAG--CA-TA-TTATCACT-CTTAGAAA-T------------GATTTTTT-----GATG---ACCGGATTTTaaggttaaatataatacgcttttcagaggcaaaaatatatatagcatattatcactcttagaaatgattttttgatgaccggatttt
gi|31 : tgagtaa--CA-TATTTATCACT-CTTAA-AA-T------------GA--TTTA-----AACA---AC--TATTTTC---G-TTTAAAACAATCGTAAAC-TTT-AAAA--C-GAAGGA--TTCTTTT-TCCT------G-T-TGC----C-TCTT--TGGC--AT----A-AA-AAA
gi|34 : GG-AGAGTT-AA---TCCATTGG-AATTT------TCAAGCT-TCA---AT-TTT--G-C-AAA-ACGTCCTTTGGTTATGCTG-AAA-AAA---------------T-ATCA---AT-GAAA-ATTAAGTTTGAAACACAG
gi|35 : g--AAGACAG-GCATATT--TAA-GATTTT-TTGA-----ATG----------T--TTACAA---TT-CTTAA-A--TATTTTGAA---GA-G-TT---T---A-AAA-ATG--TTGCTAAA-C--------TTTACTCAGT
gi|36 : ATTTTATTGT-----ATT----------T--TTACAA---TT-GTGAA-A--TATTCTCAA---GA-G-GT---C--AC-AAA-ATG--TTGCTAAAGT-TTT---TTTTACTCAGT
gi|37 : TT-AACA---AT-GAAA-ATTAAGTTTGAAACACAGT--GTATT--AAGACAT-GCATGTTGCTA--AACTTT-TT--------TT----------T--T
gi|38 : atgTT----------T--TTACAAATTTT-GTGAA-A--TATTTTCAA---AA-G-GT---TTTAA-AAA-AAG--TTGCTAAA-C-TTG---TTTTCCTCAGTAgct
gi|39 : -AA--A---ACG-TTTA-GCACCAA----A----------AGGTTAAA---AAAT-AT---A-TG-CGCTTCTCAGAAGC-AAAATGT---TTATGCA-TATta
gi|42 : TG--TTGCTAAA-C-TTT---TTTTACTCAaat
gi|42 : ataaaA-AA--A---AAG-TTTA-GCAACAA----A----------A-GTT--A---AAATTAT---A-TA-CTCTTTTaaagttaaaattatatactctttt
gi|43 : ataaatgagtaG--TTGCTAAA-C-TTT---TTTTAATCA
gi|43 : A-AA--A---AAG-TTTA-GCAACCA----A----------AGGTTGAA---AAATTAT---A-caaaggttgaaaaattata
gi|44 : tgattaTG--TTGCTAAA-C-TTT---TTTTACTCAGTA
gi|44 : A-AA--A---AAG-TTTA-GCAACAA----A----------ACGTTGAA---AAAaaacgttgaaaaa
gi|6 : tactgagtaTA-AA--AC--AAG-TTTA-GCAACAA----A----------AGGTTAAA---AGATTAT---A-TA-CGCTTTTCAGAGGC-AAAATGT---TCG--CA-TATTATTCACT-TTTAG-AA-T------------GA--TTTT-----GATG---AC--GATTTTC---G-TTTGAAACAACCATCAAC-TTT-AAAA--C-GAAGCA--TTGCTTT-TTTT------A-T-TGT----C-TTTT-CTGGC--AT----A-GA-AAAATGA-----G-------TC------GGAAAA-AA-GT----GAAAA---------------------A-TGT--GTGC--TTTTCT-ATTCATTGCAAA-TTTTT---G-T-GA---AAAA--A-TCTCGTTTGATGAG-GG-AATTT-TGCT-AACTG-GGGATACA----A--AAAAATGATGTTTAT--TCA-T-TACTTTGCGATT----------------GCGGAATTGGAA-TTTTTTT---TTCCTA-TGGAAGAGTT-AA---TCCATTGGAAATTT------TCAAACT-TCA---AT-TTTTGG-CGAAC-ACATCTTATGGTTATACTGAAAA-AAA-T-TAAGAT-TCATTTAATTT---ATGGAAA-ATTAAGCTTGAAACACAGTGGG---TAAAAGACAT-GCATGTT--TA--GA-ATT-TTAA-----ATTTTTTTTTGTGT--TTACAA---TT-GTGAA-A--TCTTTTCAATTTAATGCGT---A--AA-AAG-AAGGTTTGCTTCA-C-ATGACATTTTACTCAG
gi|9 : tgaaGTA-AA--ATAGAAG-GTTA-GCAACTA----A----------ACGTTAAA---AAATCAT---A-TG-CGCTTTTCAGAGGC-AAAATGT---TAA--GA-TATTTATCACT-CTTAG-AA-TGATTTTGATGACGA--TTTTCGTTTAATAGAAAC--GAATGTCTGGA-NNNNNNNNNNNNNNNNNN-NNN-NNNN--N-NNNNNN--NNNNNNN-NNNN------N-N-NNN----N-NNNN-CTAGC--AT----A-AA-AA--TGA-----G-------CTC-TAAAAGAAAA-AAAGT----GAAAAAGGGA-GTTTT-----CA---------------------T-ATTCATTACTAA-TTTTT---G-C-CA---AAAG--A-TTTCGTTTGATGAGTGG-AA-GT-TGCT-AAAAG-GGGATAC-----C--AAAAATGTTGTTTAT--TCA-T-T--TTT----TTTTTTTTTTTTTTTTTGGC-GAAT--GGA-CATTTTT---TACCTC-TGG-AGAGTT-AT---TCCATTGG-AATTT------TCTAACT-TCA---GT-TTT--G-CGAAA-GCGTTCTTTGGTTATACTG-AAA-AAA-T-TAAGATAGCATTT-ATCA---AT-GAAA-ATTGAGTTTGAATCACAGT--G---T--AAGACAG-GCATATT--TA--TATGTT-TTTA-----ATT----------T--TTACAA---TT-GTGAA-A--TATTTTCAA---GA-G-GT---C--AA-AAA-ATG--TATCTAAA-C--TT---TTTTGCTTGGTAgtatacgtcatcatatacgtataaagtagcagaatgatcatgatatttgtaacaggtgtctaaggtcataataacaaaataattaaacaatgctaaactttttaaaaaataaatttga
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): ATTTGACCACCAGTTTTCAAGAAATTTAAGTATTGTTTAAAAAGCCCCTTTTATCAGAAATAATTAAATCAAAGTACTGACAGTACTGATAGACGGTGGCGTGGATTTGGAATAGCTGAGCTAAGGCTGCAAAAGTCACTACCAATCAATTTATTGTAATAAACTGTGTATATACAGAGTATTGAGATATTGCATGTATATGAAAGCAAAAGTATTATTTTGGCATATTTTATTAAAATGCAATTGCAAAAGGAACGTAAAGTGGTGTGCACGTTAACTAACAAAATGGACATTTATCAGTCATATAAATTAAAGAATGAATTGAAAGTGAACATAAAATATGTCATTTGTAACATTGAAGAAATATGTTCTCCTTTCTATATTGTAAATTTTGAATGATAGTCAACCAAAATACCTTTTACATACACGAGCAGTACAGCCATCATCGCTATTATAATAGCATCCAGTAAACATAAAAAAAACTATCAGATCATATCACAACAAATAAACACAATGCAACGAGTTTCTATCATGTCTACAGAATGAGTCAGAGGTAGTTGGTGATGGGCCTGTAAATGGTAATATTCGCCTAAAAACTTTAATTTCAAAGTTAAAATCTTGACACATTCATACCCACGGCATGAAACATCACTGGGAAAGGAAGCGCCTTTCCACAATAGTGGCTTCCATTTCAATATGTGAGAATTCTGAGATGTCGCTAAATCTTTGTAACTGTTCACCTATCAAAGTAATGTCCACAACAAAGTCTTTATAAACTCCAATTTCTTCCACACAGACTTCGCATGTTGTGCCTCCAACTGTCCAGAAAATTCTCTTTCCATTGGCTGGGTCTTCTGCATGATAAATATTAATTACGAAAAATTGTTTACATTTAAAATGTTGAGTGTTTGGCGAAGGATCTACCAATAATAAATCAAACACTCTACTAGT
Unaligned ( gi|2 ): AATCAAAGTACTGACAGTACTGATAGACGGTGGCGTGAATTCAGAAAAACTAAGCCAAGGCAGCAAAAGTCACTACCAATGGATTTATTGTGTAAACTGTGTATTGACAGAGTATTGACATATTGCATGTTTATAAAAACAAAAGTATTATTTGGTTTTAAAAGAAATTGCAGGAGGAACGTATGATATGGCGTTCAAGTAAACAAAATGGGCAGTCATAATTATAAGGTAAAAATTCAATTGAAAGTGAACATAAAACATATCATTTGTAATATTGTAGTTTACATTTAATACTACCGGTAATTTTAAGTCAGACAGATTCTACTTTGTATATTGTAAAGTATTTTCTGTACAAGGCATCGTCGTTATAGCATTCAGTAATTGAATAACCCCCCAACCCCCTCAAAAAAAAACCCAAACAATCACATCATATCACATAACTGAACAGTAAAATAGAGCAAAGGGAGATCAGCCGCTTAAAATTTAAGCAACAAATATAACGAATATCTATCATGTCTTCAGAATGAACTATCCTAAGAATTAAGTCAATGGTAGTTGGTGATTGGCCTATGGAATGGCAATGTTTGACTACAAATTTCAATATTCGAGAATTCTTAGATGTCACCAAATCTTTGTAACTATTCACGTATCAAAGCAATGTCCACAACAAAGTCTTTATAAGCTCCATTTTTTTCCACAGATTTCGCATGTTGTATCGCCAAAGGAGATTGCCTCCAATGTCCATAAATTTCTCTCTTACACATGATAAATATTAATTACGAAGAACTGTTTACATTTAAAATACTGAGCGAAGGAGTTATATCTACCTTTATTTATTGCAGCCATAGCACAAGTGACGCTCAAACTTGCAAACACTCTACCAGTGGTTCACTCTGTTACCTCACCGGTTTTTTTTTTTATGAATATAACAAGTACAGA
Unaligned ( gi|3 ): ATATATCAAAGTACTGATAATACTGATAGACGATGGCGTGGATTTGGAAAAGCTGAGCTAAGGCTGCAAAAGTCACTACCAATCAATTTATTGTCATAATCTGTGTATATATAGAGTATTGAGATATTGCATGTATATGAAAGCAAAAGTATTATTTTGGCATATTTTATTAAAATGCAATTGCAAAAGGAACGTAAAGTGGCATGCACGTTAACTAACAAAATGGACACTTATCAGTCATATAAATTTTAAAAAAATGAATTGAAAGTCAACATAAAATATATCATTTGTAACATTGAAAATTATGTCCTCCTTTCTATATTGTAAATTTTGAATGATAGTCAACCAAAATACCTTTTACATTTACAAGCAGTACAGGCATCCAGAGAAGTAAGCTTGCATCCCCTGTTGACATCCAGTAAACNNNNNNNNNNNNNNNNNNNNNNNNNAATAAAAAAACAAACAAACAACAAACAAAAAAACTATCAGATCATATTACAACAAATAAATACAATGTAACAGTATCTATCATTCTACAGAAAGTCACATATTGTGATTGTACTAATGGCAATATTCGCCTAAAAACTTTCAAAGTCAAATCTATGCATACCCACGCATTAAGCTTTCACTGAAAGAAGCCTTTCACAATAGTGTTCCATTTCAAATTTTGAATTCTTGAGATGTCCTAAATTTTTAAACACTTCACCTATCAAATAATTATTTCCACAACAAATCTTATTAAACTCCAATCTCTTCCACACAGACTCGCATGCT
Unaligned ( gi|4 ): AATCAAGTACTGATAGACGGTGGCATTGGATATATGGAAAAACATTAAAATATTCATTTATATTTAAAGAAATATGTTCTCCTTTTATATAGATGTAAATTTTGAAGGATAGTATACCAAAATACCCTTTTTACATTTAATGTACAAGCAGTTAGCATCATACGCTATACAGTAAACATTAAAAACAAATCTATCAGATCACATTACAACAAATGAACACTGTAACGAATACCTATCCATGTCTACAGATAACGTATCCAATTAAAGTCAATGGAAGTTGGTGATGGGCCTATAGAATGGCAATTCGACTTTACAAACTTCCAAATTTGACACATACATATGAAGCTTCCCCACGGGAAGCTTCACTGGGAAAAGGAAGTCTATTCCACAATAGTGTCTTCCATTTTCAATATGTCGGAATTTTTGAAGATGAGCTCGCTAAAAATCTTATGTAACTGTTTCATCGTATTCAAAAATAATATTCAAAACAAAGCCTTTATTAAAGTCAATCTCTTCCACACCGACTTCGCACATGTTTAATCTGTGTCGCCAATAGGAGATTGCTTCCAACCTAAGAAAATTATTCTTCCATTGGCTGGGTCTTCTGCATGATGCGATCATTAATTACGAAGAATTGTTTAACATTTAAAATGTTGAGCGTTTCGGCGAAGGAGGCCGAAAGATACCAGTAACAAGCAAACACATCTGCTAGTGAATTCCCTGCGTTGAAATACACCGATTTTTTCGATAAATATA
Unaligned ( gi|5 ): AATCAAAGTACTGACAGTACTGATAGACGGTGGAGTCAACATAAAATATTTCATTTGTAACATTAAAGAAATATGTTCTCCTTTGTATAGTATAAATTTTGAAGAATAGTCTACCAAAATACCTTTTACATTTACATGTACAAGCAGTACAGGCATCATCGCTATAGAGGCATCCAGTAAACATAAAAAAAATCTATCAGATCACATTACAACAAATGAACACTGTAACGAATACCTATCATGTCTACAGAATGAACTATCCCAAGAATTAAGTCAATGGAAGTTGGTGATGGGCCTATGAATGGCAATAACTTCAAATCTTGACACATTCACATCCACGTACGGTATGAAGCTTTACTGGGAAAGGAAAACTTCCACAATAGTGTCTTCCATTTCAATATGTGAGAATTCTGAGATGTCGCATAAAATATTTGTAACTGTTCATGTATCAAAGTAATGACCAAAACAAAGCCTTTATAAAGTCCAATATCTTCCACACCGACTTCGCATGTTGTGTCGCCAATAGGAGATTGCAATTGCCTCCAACTGCCCAGAAAATTCTCTTTCCATTGGTTGGGTCTTCTGCATGATATATATTAATTACGAGAATTGTTTACATGTATATTTAAAATGTTGAGCGTTTGGCGAAGGAGCTACAGTAACAAGCAGACACTCTGCTAGTGATTCCCTGCGTTAACTCGCCGCTTTTTCATAAA
Unaligned ( gi|7 ): GCTAAGCGCCAGCAAATTTTCACCTACCCAATCAATCTTTATGATATAAAACAGGTATATATACAGAGACAAATACTGAGGCTATCTGCATGTTTTATTTATTACTTGTGATATGCACGATACCGCCATTAATGTGGCGTTCATCAGTAAACACATAAGAGCATCTTATCAGCATATAAGTTAAAATAATTCAATTTAAAGCGAATATCAAACATCTCATTCCTGTAACAGTAATAACATTTCAATCACTTACCGGGTCGTAATTACATCAATACAGAAATTTACCTTGTCATATTAAAAGATTTGAAAGAATAGTCAATCAAAACATACTTTTTATTTTATGCTACAAAGCAGCACAGGCCATCATCATTAATCCAGTTTAATGAACTAAAAAAACAGAACAAACAAAAAACCAAAACCCAAACGCTCTTGACCTGAATCACTATTATGTTAACAATAATCTTATCCATGTCTACAGAACATAAAACCTTACTAAAGATTAGTCATATGATAGCTTTGGTACTTGCCTATGATTACCAACTGATCGTACCAACAAACTATCAATGTTTCAGACGCTCACGGAAAGAAAAACCTCTCCACAATACCGTGTCTTTTCCCATTTCAATATTCAGACTTCCTTAGATGCCGCCAAATCAATCGTTAGCCTGTT
Unaligned ( gi|8 ): ATATGTTCTCCTTTGTATAGTGTAAATTTTAAAGGATAGTCTATCAAAATACCTTTTACATTTACATATACAAGCAGTACAGGCATCATCGCTATAGAGGCATCTAGTAAACATAGTAAACATAAAAAATCTATCAGATTACATTACAACAAATGAACACTGTAACGAATATCTATATCATGTCTACAGAATGAAGTATCCCAATAATTAAGTCAATAGAAGTTGGTGATGGGCCTATGAATGGCAATATTCGACTACAAACTTCAAATCTTGACACATTCACACCCACGTACGGTATGAAGCTTCACTGGGAAAGGAAGCCTTTCCACAATAGTGTCTTCCATTTCAGATGTCGCATAAAATCATGTATCAAAGTAATGACCAAAACAAAGCCTTTATAAAGTCCAATCTCTTCCACACCGACTTCGCATGTTGTGTCGCCAATAGGAGATTGCAATTGTCTCCAACTGCTCGGATGATTCTCTGTCCCTTGGCTGGGTAGTCGGCATGATATCTATTGATTACGAAGAATTGTTTATATCTAAAATGTTGAGCGTTTGGCGAAGGAGCTACCAGTAACAAAGCAGACACTCTGCTAGTGATTCCCTGCGTTAACTCACCGTTTTTTCAT
Unaligned ( gi|23 ): AATCAAAGTACTGATAAACGGTGGCTTAGATTTGGAAAAGTCAACATAAAATATTTCATTTGTAACATTGAAGAAATATGTAGTGCTTTGTATAGTGTAAATTTTGAAGGATAGCCTACCAAAATACCTTTTACATTTACATGTACAAGCAGTACAGGCATGATCGCTATAGAGGCATCCAGTAAGCATAAAAAAACCTATCAGATCACATTACAACAAATGAACAC
Unaligned ( gi|25 ): CAAAGTAGCTGGCCTTAAGTATTGATAGACGGTGAGTCAAATTTTACAATATTTTGTCAATGTAGCAATATTTGATATGTTTCTAAATTTGTTGGGTCATAATTGTCTAGAATAGTGATATTAAATTAACATATACGCACAAGCAGACAGCAT
Unaligned ( gi|26 ): AATAACAAAGTACTGGACAGTACTGATAGACGGCTGGCGTTGAATTCAGAAAAAAACTAAGCCAAGGCAGCAAAAGCACTACCAATGGATTTATTGTCGTAAACTGTGAGTTGGTTAAATTGATCAGCATTTTTA
Unaligned ( gi|32 ): TACAGAATGAACTATACTAAGAATTAAGTCAATGGTAGTTGCTGATTGGCCTATGAATGGCAATGATCGACTACAAACTTTCAATGTTCATGACGCTTCAC
Unaligned ( gi|33 ): AAGACAATATTCGCTTGCAAACTTTCAAAGTTCAAATCTTGACACATTCATACCCACGGCATGAAGCTTCACTGGGAACGGAAACCTTTCCACGATAAA
Unaligned ( gi|40 ): TTGGCGAAAGGAGTTACCATTAACAAAGCAGACACTCTGCTAGTGATTCCCTGTGTTAACTCAC
Unaligned ( gi|41 ): TAAATCAAAGTACTGATAGTACTGATAGACGGTGGCGTGGTTGTGAAAAGTTTAGCTAAGGTGG
Unaligned ( gi|45 ): TAATCAAAGTACTGACAATACTGATAGACGGTG
Unaligned ( gi|46 ): GAATTCTGAGATGTCGCTAAATCTTTGTAAC