lowQualScore : 111111111111111111111111111
lowQualScore : 1 6666666666666666666666666666 1 1 11111 1 555555555555 1 1 2222222 1 22 1 333 2222222 11111 777777777777777777777777 1 22 777777777777777777777777777 11 1 1111 1 1 1 1 11 22 1111 1 1 22 22 1111
lowQualScore : 4 8 0 8888888888888888888888888888 0 6 3 5 8 4 6 3 0 0 55555 3 0 6 666666666666 0 2 3 0 9999999 2 0 33 0 111 9999999 6 66666 777777777777777777777777 3 6 0 11 222222222222222222222222222 8 33 0 3 5 3 0 7777 1 5 999 5 5 0 1 5 2 8 88 44 6 88 5 5 1 1 5 4444 4 1 0 1 4 5 7 5 00 22 99 5 2 0000 777
lowQualScore : . . . ............................ . . . . . . . . . . ..... . . . ............ . . . . ....... . . .. . ... ....... . ..... ........................ . . . .. ........................... . .. . . . . . .... . . ... . . . . . . . .. .. . .. . . . . . .... . . . . . . . . .. .. .. . . .... ...
lowQualScore : 0 8 0 0000000000000000000000000000 8 6 2 0 0 6 2 2 0 0 88888 0 0 0 555555555555 0 2 2 0 0000000 2 0 88 0 555 6666666 7 77777 000000000000000000000000 2 0 6 77 888888888888888888888888888 8 88 2 0 0 8 2 0000 7 0 888 2 0 8 0 0 5 0 33 88 7 88 2 2 0 0 2 2222 2 3 1 4 3 7 9 0 88 00 00 0 5 6666 111
consensus : ATACGAGNGTGTAC-G----------CGTTCT----AGT----TCGACATTTCCTCGACATTGTT-ACGAATTNTGACGATG-ATG-ATT-GC-ATAAAAGTA-ATGTGCATAT-----TA-----TTT-TTAATAAGTATAATTGTTCTCTACACACTGAC-TAACACGAA----CCATGCACA-TAGAAAG-G-CAACAA-AGCATA-A----AGTTACCGCAGAACAAGACATTGTA-----TCACTGTTACATGTA------------------------CAGCCTATTCAACAACACAACGTCTGAATGAGAGAATAGAGAAAAGTCGCAAGTATGAGAGCCAACAGACAAATAATGCGAGCGTGAAATATTCAAATATCGGTATACCCAA------------GTCGCAGTAGATCGGCTACATTCGTACATTTCTCGCAAA--ACATTCGTCACAACTCGTCAAGAACTCGTATAAATGTCGACTAGACTCGC----TAGAGTTCGTACATTCTCGTAGAAAAATCTTCCA--TTGTGGAGAAAGTGTCGTACACACATCGTACAGAGGACGCCTTAAA--CTCGCGTTAAAAA-GAAACTGTTTTCCTGTTCTCGTGTCAGTGTGGAAGAGAA----CTCGAGCAGAAATCGTACTGATGTCCCCNTCATCAA-AAACCATTGCAAACTCGTGGA-TTTTTTGGCGAGTTN-TAAC-TCCCCAGCACTCGTGA----TAACT--CGTAGTTCCAAATCGTGACAGTGTGACCGGGG
Reference ( gi|2 ) : ATACGAGTGTGTAC-G----------TGTTC-----AGT----TCGACATTTCCACGACATTGTT-ACGAGTTTTGACGATG-ATG-ATT-GC-ATAAAAGTA-ATATGCATAT-----TA-----TTT-TTAATAAATATAATTGTTCTCTACACACTGAC-TAACACAAA----CCATGTACA-TAGAAA--G-CAACAGCGGCATA-A----AGTTACGGCAGAACAAGACATTGTA-----TCACTGTTACATGTA------------------------CAGCCTCTTCAACAACACAACGTCTGAATGAGAGAATAGAGAAAAGTTGCAAGTATGAGAGGAAACAGACAAATAATGCGAGCGTGAAATATTCAAAT-------------A------------ATCGCAATAGATCGACTACATTCGTACATTTCTCGCAAA--ACATTCGTCACAACTCGTCAAAAACTCGTGTAAATGTCGACTATACTCGC----TAGAGTTCGTACATTCTCGTAGAAAACTCTTCCA--CTGTGGAGAAAGTGGCGTACACAGATCGTACAGAGTACGCCTTTAA--CTCGTGTC-AAAA-GAAACTGTCGTCCTGTTCTCGTGTCAGTGTGGAAGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCCATCATCAA-AAAGCATTGGAAACTCGTGGA-ATTTTTGAAGAGTTT-TAAC-TCCCCAGCACTCGTGA----TAACT--CGTAGTTCCAAATCGTGACAGTGTGACCGGGG
gi|1 : ATACGAATGTTTAC-G----------CGTTC-----AGT----TCGACATTTCATCAACATTGTT-ACGAATTTTGACAATG-ATG-AT-------AAAAGTA-ATGTGTACAT------A-----TTTGTTGGTAAGTATAATTGTTCTCTACACACTGAC-TAACACGA-----CTATGCACA-TCGAAA--GGCAACAA-AGCATA-A-----GTTACCGCAGAACAAGACATTGTAAATTATAATTGTTACATGTAAAGGCAAAGATAACGAACAGTTTATAGCCTTTTCAACAACACCATGTCTGAATGAGAGAACGGAGGGAAGTTACAAGTATGAGAGCCACCACACAAATAATGAGAAAGTTAAATATTCTAAT-------------ATCTATGTGTCCAGTCGCAATAGATCGGCTACATTTGTACATTTCTCGCAAA--ACATTCATCACAACTCGTCAGGAACT-ATA-AAATACCGACTAGACTCGC----TAAACCTCGTATATTCTCGTAGAAATATCTTCCA--TTGTGTAGAACGTTTCGTACACACATTGTACAGAGGACGCCTTAAA--CTTGTATA-AAAAAGAAACTATCGTCCTGTTCTCGTGCCATTGTGAAATAGAA----CTCGAGCAGAAATCGTACTGATGTCTCTAACATCAA-AAAGTATTGCAAACTTGTGGA-GTTTTTGGCGAGATT-GACC-TCCCCAGCACTCGTGA----TAACT--CGTACTTCCAAATCGTGACAGTGTGACCGGGG
gi|4 : acATACGAGTGT-TACAG----------TGTTTT----AAT----GCGAC-TTTCCTC-ACATTGTT-ACGAATTTTGACAATGGATGCATT-GC-ATAAAAGTATATGTGCATATGCCTATAGATTTTTT-TTAATAAGTATAATTGTTCTCTACACACTGACTTAACACATAGATTCTATGCACATTAGAAAATG-CAACAA-AGCATA-A----cttaagattttaatagttttctttgtgggatgaaa
gi|5 : tcttggctgatgtcgaaagaaatgtctcttcattgtcgcccagtactcgccaccacgcgagaattttcaaaacggtttaaaattgtctgcgagtttttggtacctcatataaatgtcgaatattatgtttgtccaatcttgtggttgtatcggccatgcaatgtcgccaaccgcttctcgccattagaaagtatctcataaactggatatctgcgttgcggagttcgaaagaactataataacgatcactgctcaacatggcattcaacatacaagaggtttccaagactcctgctgacattcatTACGAGAATGTAC-G----------AACTCTAGCGAGTCTAGTCGACATTTACACGAGTTCCTG-ACGAATTATGACGA---ATG-TTTAGCGAGAAATGTA-
gi|6 : agtatattgtatcactgttacatgtacagcctataaacacaatgtctggatgagagaatagcgaaaagtcgcaagtatgagaggcaacagacaattaatgcaagcgtgaaatattcaaatatcggtatacccaagtcgcagtagatcggctacattcgTACGAGAATGTAC-GAACTCTGATGTGTCT-----AGT-----CGACATTTGCACGG-ATTCTTGACGAGTTGTGACGAgaaaaatattccattgtggagaaagtgttgtacacacatcgtacagaggacgtcttaaactcgtgttaaaaagaaactgttgtcctattctcatgtcagtgtggaggagaactcgagcagaaatcgtactgatgtctctatcatcaaaatgcattgcaaactcgtggagtttttgacgagttttaactccccagcattcgtgataactcgtagttccaaatgatgacagtgtgaccggggctt
gi|3 : atgtatatccaagtccaaataggacgtctacactcgtacaattctcgtagaaattCATTTCCTCGACGTTGTT-ACGATTTATGACGATG-ATG-ATT-GC-ATAAAAGTA-ATGTGCATAT------A-----TTT-TTAATAAGTATGATTGTCCTTTACAT----AC-TAACAC-AA----CCATGCACA-CAGAAAG-G-CAACAA-AGCATATACTGTAGTTACCGCAGAACAAGACATTGTA-----TCACTGTTACATGTA------------------------CAGCCTATTCAACAACACAACGTCTGAATGAGAGAATAGAGAAAAGTTGCAAGTATAAGAGCCAACAGACAAATAATGCGAGCGTGAAATAGTCAAATATCGGTATATCCAA------------GTCGCAGTAGATCGGCTACATTCGCACATTTCTCGCAAACTATATTCGTCACAACTCGTTAAGAACTCGTATAAAAGTCGACTAGACTCGCCATATATAGTTCGTACATTCTCGTAGAAAAATCTTCCA--TTGTGGAGAGAGTGTCGTATACACATCGTACAGAGGACGCCTTAAA--CTCGTGTTAAAAA-GAAACTGTCTTCCTGTTCTCGTGTCAGTGTGGAAGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCCTTCATCAA-AAATCATTGCAAACTCGGGGA-TTTTTTGACGAGTTT-TAAC-TCCCCGGCACTCGTGATAATTAACT--CGTAGTTCCAAATCGTGACAGT-TGACCGGGGgaaaaatatcccactctggagaaattgccatacacagatcgtaaagatgtcacccaaaactcaagttctcctgtcagtgtggaagagaattatctcgagtagtccaactgatgtccacaccatcgaaaaccattgcaatctcttggatttttttggcgagttataactccccagcactcgtgataactcgtagttctaaatcat
gi|12 : T-----TA-----TTT-TTAATAAATATAATTGTTCTCTACACACTGAC-TAACACAAA----CCATGTACA-TAGAAA--G-CAACAGCGGCATA-A----AGTTACGGCAGAACAAGACATTGTA-----TCACTGTTACctt
gi|17 : AAGACGC-ATA-----TCACTGTTACATGTA------------------------CATCCTATTCAACAACACACCATC
gi|5 : ATATTGTA-----TCACTGTTACATGTA------------------------CAGCCTAT---A-AACACAATGTCTGGATGAGAGAATAGCGAAAAGTCGCAAGTATGAGAGGCAACAGACAATTAATGCAAGCGTGAAATATTCAAATATCGGTATACCCAA------------GTCGCAGTAGATCGGCTACATTCGTACATTTCTCGCTAA--ACATTCGTCATAATTCGTCAGGAACTCGTGTAAATGTCGACTAGACTCGC----TAGAGTTCGTACATTCTCGTAGAAAAATATTCCA--TTGTGGAGAAAGTGTTGTACACACATCGTACAGAGGACGTCTTAAA--CTCGTGTTAAAAA-GAAACTGTTGTCCTATTCTCATGTCAGTGTGGAGGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCTATCATCAA-AATGCATTGCAAACTCGTGGA-GTTTTTGACGAGTTT-TAAC-TCCCCAGCATTCGTGA----TAACT--CGTAGTTCCAAATGATGACAGTGTGACCGGGG
gi|16 : agtCATTGTC-----TCATTGTTACAAACA------------------------CAGCCTATATACCAACATCACGTTTGAATGActt
gi|6 : ATATCCAAGT----------------------------CCAAATAGGACGTCTACACTCGTACAATTCTCGTAGA--AATTTCGTCACAACTCGTCAAGAATCCGTGCAAATGTCGACTAGACACAT----CAGAGTTCGTACATTCTCGTAGAAAAATATCCCA--CTCTGGAGAAATTGCCATACACAGATCGTAAAGA------------------TGTC-ACCC-AAAAC-----TCAAGTTCTCCTGTCAGTGTGGAAGAGAATTATCTCGAGTAG---TCCAACTGATGTCCACACCATCGA-AAACCATTGCAATCTCTTGGATTTTTTTGGCGAGTTA-TAAC-TCCCCAGCACTCGTGA----TAACT--CGTAGTTCTAAATCAT
gi|9 : atgtAAATACTAATATACATGT--A--ATTCTTGT----CAGACTTGGT-CAT-CTCGTAGAAAAATCTTCCATTCTG-GGAGAAA-TGTCGTACACACAT-GTACAGAGGACGCATTTAAAGCTCGCGTT-AAAA-GCATCTGTTTTCCT-CTCTC--GTTAATGTATAA-AGAA----CTCGAACAGGA--CATGTTTACG--CCCTTCAACAATATACCATTGCCACTTCGTGAG-TTCTTTTGTGAGTTA-TAAC--CCCCAG-AATCGTGA----TAACT----TTGTTCCAAATCGTGACAG-GTGACAGGG
gi|7 : AGAGCTTGTGCATTCTCGTAGAAAAATCTTCCA--TTCTGGGGAAAATGTCGTACACACATCGTACAGAGGACGCATTTAAAGCTCGCGTTAAAAA-GCATCTGTTTTCCCTCTCTCGTGT-AATGTATAAAAGAA----CTCGAACAGGA--CATGTTTA---CCCCTTCAACAA-ATACCATTGCCAACTCGTGAA-TTCTTTTGTGAGTTA-TAAC-TCCCCAGAACTCGTGA----TAACT--T---GTTCCAAATCGTGACAGTGTGACCAGGG
gi|11 : tgtcGATGTCTTTGCCATCAA-GAACCATTGCAAACTTGTAGA--TTTTTGC-GAGTCA-TAATATTCCCAGCACTTGTTA----TATCT--CGTAATTCCAGATCGTGACAGTGTAACCGGGcttacgttcttattttgaaattttcctt
gi|8 : tcaaaagGA-GTTTGCGGCAAGTTTATAAC-TCATAA--ACTCGTGG----TAAATAATGTAG---CATA-CGTGACAGTGTGACCactt
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): GAAGAATGTTTCTTCGTTGTGTCCAGTACTCGTCGAGCAGCGAGGAGAATTTCAAACGGTTTAAAATTGTCATGCGAGTTTTAGTATCATATAAATATCGAAGACACGTCGTCCAATCTCGTGTGCGTGTCGCCGAGC
Unaligned ( gi|13 ): AATGCAGAATAACGAGTTTGTGTGCATGGCCTATAGAATTTTTTTAAAAGCATTATAAATGTCTACAGACTACAGACACACAGATTATATAC
Unaligned ( gi|14 ): AGTATATGTTTCCCGTTTCTCGAGTAAGCAAAGAACTAGACATCGACATTTTTGCCCCTCCAGCAGATACGCTTTTGTAGGTGTATTCTTT
Unaligned ( gi|15 ): GCATGTTTTCCCGTAAACCCATTTTACGAACGACTGGTGACTGCATGCAAGATGGCA
Unaligned ( gi|18 ): ATTGATGTATGATTGTTTCACAATGTAAAGGCAAAGATAACGAACAG
Alignments
lowQualScore : 1 1 2 1 1 1 444444444444 2222222 22 1 22222 11111 666666666666666666666666 11 1111 1 1 1111
lowQualScore : 1 5 3 0 3 3 6 1 1 0 0 3 0 111111111111 8 8 3333333 8 11 6 8 00000 2 44444 444444444444444444444444 3 2 2 3 2 4 0 11 2 1 4444 0 0 5 3 1 1 2 55 1 1 55 3 3 3 2222 2 8 0 1 5 1 66 55 4 1 9999 66
lowQualScore : . . . . . . . . . . . . . ............ . . ....... . .. . . ..... . ..... ........................ . . . . . . . .. . . .... . . . . . . . .. . . .. . . . .... . . . . . . .. .. . . .... ..
lowQualScore : 0 0 3 7 7 2 5 2 0 0 0 2 0 666666666666 0 0 6666666 0 22 0 0 22222 5 33333 222222222222222222222222 5 0 5 2 5 6 8 00 5 7 2222 1 7 7 0 4 4 7 33 3 9 66 0 0 0 1111 3 4 1 0 0 4 33 44 4 1 4444 11
consensus : ATACGAGTGT-TAC-GCGTTC-AGTTCGACATTTCCTCGACATTGTTACGAATTTTGACGATG-ATG-ATTGCATAAAAGTA-ATGTGCATAT-----TA-----TTT-TTAATAAGTATAATTGTTCTCTACACACTGAC-TAACACAAA----CCATGCACA-TAGAAAG-GCAACAACAGCATA-A----AGTTACNGCAGAACAAGACATTGTA-----TCACTGTTACATGT------------------------ACAGCCTATTCAACAACACAACGTCTGAATGAGAGAATAGAGAAAAGTTGCAAGTATGAGAGNCAACAGACAAATAATGCGAGCGTGAAATATTCAAATATCGGTATATCCAAGTCGCAATAGATCGGCTACATTCGTACATTTCTCGCAAA--ACATTCGTCACAACTCGTCAAGAACTCGTGTAAATGTCGACTAGACTCGC----TAGAGTTCGTACATTCTCGTAGAAAAATCTTCCATTGT-GGAGAAAGTGTCGTACACACATCGTACAGAGGACGC-CTTAAA-CTCGCGTTAAAAAGAAACTGTCGTCCTGTTCTCGTGTCAGTGTGGAAGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCCNTCATCAA-AAACCATTGCAAACTCGTGGA-TTTTTTGGCGAGTTN-TAAC-TCCCCAGCACTCGTGA----TAACT--CGTAGTTCCAAATCGTGACAGTGTGACCGGGG
Reference ( family-3184 ) : ATACGAGNGTGTAC-GCGTTCTAGTTCGACATTTCCTCGACATTGTTACGAATTNTGACGATG-ATG-ATTGCATAAAAGTA-ATGTGCATAT-----TA-----TTT-TTAATAAGTATAATTGTTCTCTACACACTGAC-TAACACGAA----CCATGCACA-TAGAAAG-GCAACAA-AGCATA-A----AGTTACCGCAGAACAAGACATTGTA-----TCACTGTTACATGT------------------------ACAGCCTATTCAACAACACAACGTCTGAATGAGAGAATAGAGAAAAGTCGCAAGTATGAGAGCCAACAGACAAATAATGCGAGCGTGAAATATTCAAATATCGGTATACCCAAGTCGCAGTAGATCGGCTACATTCGTACATTTCTCGCAAA--ACATTCGTCACAACTCGTCAAGAACTCGTATAAATGTCGACTAGACTCGC----TAGAGTTCGTACATTCTCGTAGAAAAATCTTCCATTGT-GGAGAAAGTGTCGTACACACATCGTACAGAGGACGC-CTTAAA-CTCGCGTTAAAAAGAAACTGTTTTCCTGTTCTCGTGTCAGTGTGGAAGAGAA----CTCGAGCAGAAATCGTACTGATGTCCCCNTCATCAA-AAACCATTGCAAACTCGTGGA-TTTTTTGGCGAGTTN-TAAC-TCCCCAGCACTCGTGA----TAACT--CGTAGTTCCAAATCGTGACAGTGTGACCGGGG
gi|1 : ATACGAATGTTTAC-GCGTTC-AGTTCGACATTTCATCAACATTGTTACGAATTTTGACAATG-ATG-AT-----AAAAGTA-ATGTGTACAT------A-----TTTGTTGGTAAGTATAATTGTTCTCTACACACTGAC-TAACACGA-----CTATGCACA-TCGAAAG-GCAACAA-AGCATA-A-----GTTACCGCAGAACAAGACATTGTAAATTATAATTGTTACATGTAAAGGCAAAGATAACGAACAGTTTATAGCCTTTTCAACAACACCATGTCTGAATGAGAGAACGGAGGGAAGTTACAAGTATGAGAGCCACCACACAAATAATGAGAAAGTTAAATATTCTAATATCTATGTGTCCA-GTCGCAATAGATCGGCTACATTTGTACATTTCTCGCAAA--ACATTCATCACAACTCGTCAGGAACT-ATA-AAATACCGACTAGACTCGC----TAAACCTCGTATATTCTCGTAGAAATATCTTCCATTGT-GTAGAACGTTTCGTACACACATTGTACAGAGGACGC-CTTAAA-CTTGTATAAAAAAGAAACTATCGTCCTGTTCTCGTGCCATTGTGAAATAGAA----CTCGAGCAGAAATCGTACTGATGTCTCTAACATCAA-AAAGTATTGCAAACTTGTGGA-GTTTTTGGCGAGATT-GACC-TCCCCAGCACTCGTGA----TAACT--CGTACTTCCAAATCGTGACAGTGTGACCGGGG
gi|11 : acGATGTCTTTGCCATCAA-GAACCATTGCAAACTTGTAGA-TTTTT--GCGAGTCA-TAATATTCCCAGCACTTGTTA----TATCT--CGTAATTCCAGATCGTGACAGTGTAACCGGGcttaagattttaatagttttctttgtgggatgaaa
gi|12 : tcaaaagT-----TA-----TTT-TTAATAAATATAATTGTTCTCTACACACTGAC-TAACACAAA----CCATGTACA-TAGAAA--GCAACAGCGGCATA-A----AGTTACGGCAGAACAAGACATTGTA-----TCACTGTTACactt
gi|16 : CATTGTC-----TCATTGTTACAAAC------------------------ACAGCCTATATACCAACATCACGTTTGAATGA
gi|17 : AAGACGC-ATA-----TCACTGTTACATGT------------------------ACATCCTATTCAACAACACACCATC
gi|2 : ATACGAGTGTGTAC-GTGTTC-AGTTCGACATTTCCACGACATTGTTACGAGTTTTGACGATG-ATG-ATTGCATAAAAGTA-ATATGCATAT-----TA-----TTT-TTAATAAATATAATTGTTCTCTACACACTGAC-TAACACAAA----CCATGTACA-TAGAAA--GCAACAGCGGCATA-A----AGTTACGGCAGAACAAGACATTGTA-----TCACTGTTACATGT------------------------ACAGCCTCTTCAACAACACAACGTCTGAATGAGAGAATAGAGAAAAGTTGCAAGTATGAGAGGAAACAGACAAATAATGCGAGCGTGAAATATTCAAAT-------------AATCGCAATAGATCGACTACATTCGTACATTTCTCGCAAA--ACATTCGTCACAACTCGTCAAAAACTCGTGTAAATGTCGACTATACTCGC----TAGAGTTCGTACATTCTCGTAGAAAACTCTTCCACTGT-GGAGAAAGTGGCGTACACAGATCGTACAGAGTACGC-CTTTAA-CTCGTGTC-AAAAGAAACTGTCGTCCTGTTCTCGTGTCAGTGTGGAAGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCCATCATCAA-AAAGCATTGGAAACTCGTGGA-ATTTTTGAAGAGTTT-TAAC-TCCCCAGCACTCGTGA----TAACT--CGTAGTTCCAAATCGTGACAGTGTGACCGGGG
gi|3 : CATTTCCTCGACGTTGTTACGATTTATGACGATG-ATG-ATTGCATAAAAGTA-ATGTGCATAT------A-----TTT-TTAATAAGTATGATTGTCCTTTACATACT-----AACAC-AA----CCATGCACA-CAGAAAG-GCAACAA-AGCATATACTGTAGTTACCGCAGAACAAGACATTGTA-----TCACTGTTACATGT------------------------ACAGCCTATTCAACAACACAACGTCTGAATGAGAGAATAGAGAAAAGTTGCAAGTATAAGAGCCAACAGACAAATAATGCGAGCGTGAAATAGTCAAATATCGGTATATCCAAGTCGCAGTAGATCGGCTACATTCGCACATTTCTCGCAAACTATATTCGTCACAACTCGTTAAGAACTCGTATAAAAGTCGACTAGACTCGCCATATATAGTTCGTACATTCTCGTAGAAAAATCTTCCATTGT-GGAGAGAGTGTCGTATACACATCGTACAGAGGACGC-CTTAAA-CTCGTGTTAAAAAGAAACTGTCTTCCTGTTCTCGTGTCAGTGTGGAAGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCCTTCATCAA-AAATCATTGCAAACTCGGGGA-TTTTTTGACGAGTTT-TAAC-TCCCCGGCACTCGTGATAATTAACT--CGTAGTTCCAAATCGTGACAGT-TGACCGGGG
gi|4 : ATACGAGTGT-TACAGTGTTTTAATGCGAC-TTTCCTC-ACATTGTTACGAATTTTGACAATGGATGCATTGCATAAAAGTATATGTGCATATGCCTATAGATTTTTT-TTAATAAGTATAATTGTTCTCTACACACTGACTTAACACATAGATTCTATGCACATTAGAAAATGCAACAA-AGCATA-A----ctt
gi|5 : tcttggctgatgtcgaaagaaatgtctcttcattgtcgcccagtactcgccaccacgcgagaattttcaaaacggtttaaaattgtctgcgagtttttggtacctcatataaatgtcgaatattatgtttgtccaatcttgtggttgtatcggccatgcaatgtcgccaaccgcttctcgccattagaaagtatctcataaactggatatctgcgttgcggagttcgaaagaactataataacgatcactgctcaacatggcattcaacatacaagaggtttccaagactcctgctgacattcatATATTGTA-----TCACTGTTACATGT------------------------ACAGCCTAT---A-AACACAATGTCTGGATGAGAGAATAGCGAAAAGTCGCAAGTATGAGAGGCAACAGACAATTAATGCAAGCGTGAAATATTCAAATATCGGTATACCCAAGTCGCAGTAGATCGGCTACATTCGTACATTTCTCGCTAA--ACATTCGTCATAATTCGTCAGGAACTCGTGTAAATGTCGACTAGACTCGC----TAGAGTTCGTACATTCTCGTAGAAAAATATTCCATTGT-GGAGAAAGTGTTGTACACACATCGTACAGAGGACGT-CTTAAA-CTCGTGTTAAAAAGAAACTGTTGTCCTATTCTCATGTCAGTGTGGAGGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCTATCATCAA-AATGCATTGCAAACTCGTGGA-GTTTTTGACGAGTTT-TAAC-TCCCCAGCATTCGTGA----TAACT--CGTAGTTCCAAATGATGACAGTGTGACCGGGG
gi|6 : agtGTATATCCAAGTCCAAATAGGACGTCTACACTCGTACAATTCTCGTAGA--AATTTCGTCACAACTCGTCAAGAATCCGTGCAAATGTCGACTAGACACAT----CAGAGTTCGTACATTCTCGTAGAAAAATATCCCACTCT-GGAGAAATTGCCATACACAGATCGTAAAGATGTCAC-CCAAAA-CTC-----AA-----------------GTTCTCCTGTCAGTGTGGAAGAGAATTATCTCGAGTAG---TCCAACTGATGTCCACACCATCGA-AAACCATTGCAATCTCTTGGATTTTTTTGGCGAGTTA-TAAC-TCCCCAGCACTCGTGA----TAACT--CGTAGTTCTAAATCATctt
gi|7 : atAGAGCTTGTGCATTCTCGTAGAAAAATCTTCCATTCT-GGGGAAAATGTCGTACACACATCGTACAGAGGACGCATTTAAAGCTCGCGTTAAAAAGCATCTGTTTTCCCTCTCTCGTGT-AATGTATAAAAGAA----CTCGAACAGGA--CATGTTTA---CCCCTTCAACAA-ATACCATTGCCAACTCGTGAA-TTCTTTTGTGAGTTA-TAAC-TCCCCAGAACTCGTGA----TAACT--T---GTTCCAAATCGTGACAGTGTGACCAGGG
gi|8 : tgtcGA-GTTTGCGGCAAGTTTATAAC-TCATAA--ACTCGTGG----TAAATAATGTAG---CATA-CGTGACAGTGTGACCcttacgttcttattttgaaattttcctt
gi|9 : tACTAATATACATGT-AATT---CTTGT----CAGACTTGGT-CAT-CTCGTAGAAAAATCTTCCATTCTGGGAGAAA-TGTCGTACACACAT-GTACAGAGGACGCATTTAAAGCTCGCGTT-AAAAGCATCTGTTTTCCT-CTCTC--GTTAATGTATAA-AGAA----CTCGAACAGGA--CATGTTTACG--CCCTTCAACAATATACCATTGCCACTTCGTGAG-TTCTTTTGTGAGTTA-TAAC--CCCCAG-AATCGTGA----TAACT----TTGTTCCAAATCGTGACAG-GTGACAGGGttacagttgtcgtgtaacgtaggacttgaacacatggctgtggatgtcgaagaaatgcctcttcattgctgccagtactcgccacgcagcgcgagaattttaaacgcgtttaaaaattgtgcgagtattttccgtggaaaatgtcgtgtgtcgtcgtcggtgatgtgtcgtcagcatgcgccgcttctctccacgttagaagatctcta
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAGAATGTTTCTTCGTTGTGTCCAGTACTCGTCGAGCAGCGAGGAGAATTTCAAACGGTTTAAAATTGTCATGCGAGTTTTAGTATCATATAAATATCGAAGACACGTCGTCCAATCTCGTGTGCGTGTCGCCGAGC
Unaligned ( gi|13 ): AATGCAGAATAACGAGTTTGTGTGCATGGCCTATAGAATTTTTTTAAAAGCATTATAAATGTCTACAGACTACAGACACACAGATTATATAC
Unaligned ( gi|14 ): AGTATATGTTTCCCGTTTCTCGAGTAAGCAAAGAACTAGACATCGACATTTTTGCCCCTCCAGCAGATACGCTTTTGTAGGTGTATTCTTT
Unaligned ( gi|15 ): GCATGTTTTCCCGTAAACCCATTTTACGAACGACTGGTGACTGCATGCAAGATGGCA
Unaligned ( gi|18 ): ATTGATGTATGATTGTTTCACAATGTAAAGGCAAAGATAACGAACAG
Alignments
lowQualScore : 111 1 1 1 1 1 444444444444 22222 11 2 22222 11111 666666666666666666666666 11 1111 1 1 1111
lowQualScore : 777 3 0 3 3 6 1 0 0 3 0 111111111111 8 8 77777 8 11 0 8 00000 1 44444 444444444444444444444444 3 1 3 2 0 11 3 4444 0 0 5 3 1 1 2 55 1 1 44 3 3 3 2222 2 8 0 1 5 1 66 55 4 1 9999 66
lowQualScore : ... . . . . . . . . . . ............ . . ..... . .. . . ..... . ..... ........................ . . . . . .. . .... . . . . . . . .. . . .. . . . .... . . . . . . .. .. . . .... ..
lowQualScore : 777 3 7 3 2 5 2 0 0 2 0 666666666666 0 0 66666 0 22 0 0 22222 0 33333 222222222222222222222222 5 0 2 5 8 00 8 2222 1 7 7 0 4 4 7 33 3 9 77 0 0 0 1111 3 4 1 0 0 4 33 44 4 1 4444 11
consensus : ATACGAGTGT-T-AC-GCGTTC-AGTTCGACATTTCCTCGACATTGTTACGAATTTTGACGATG-ATG-ATTGCATAAAAGTA-ATGTGCATAT-----TA-----TTT-TTAATAAGTATAATTGTTCTCTACACACTGAC-TAACACAAA----CCATGCACA-TAGAAAG-GCAACAACAGCATA-A----AGTTACNGCAGAACAAGACATTGTA-----TCACTGTTACATGT------------------------ACAGCCTATTCAACAACACAACGTCTGAATGAGAGAATAGAGAAAAGTTGCAAGTATGAGAGNCAACAGACAAATAATGCGAGCGTGAAATATTCAAATATCGGTATATCCAAGTCGCAATAGATCGGCTACATTCGTACATTTCTCGCAAA--ACATTCGTCACAACTCGTCAAGAACTCGTGTAAATGTCGACTAGACTCGC----TAGAGTTCGTACATTCTCGTAGAAAAATCTTCCATTGT-GGAGAAAGTGTCGTACACACATCGTACAGAGGACGC-CTTAAA-CTCGCGTTAAAAAGAAACTGTCGTCCTGTTCTCGTGTCAGTGTGGAAGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCCNTCATCAA-AAACCATTGCAAACTCGTGGA-TTTTTTGGCGAGTTN-TAAC-TCCCCAGCACTCGTGA----TAACT--CGTAGTTCCAAATCGTGACAGTGTGACCGGGG
Reference ( family-3184 ) : ATACGAGTGT-T-AC-GCGTTC-AGTTCGACATTTCCTCGACATTGTTACGAATTTTGACGATG-ATG-ATTGCATAAAAGTA-ATGTGCATAT-----TA-----TTT-TTAATAAGTATAATTGTTCTCTACACACTGAC-TAACACAAA----CCATGCACA-TAGAAAG-GCAACAACAGCATA-A----AGTTACNGCAGAACAAGACATTGTA-----TCACTGTTACATGT------------------------ACAGCCTATTCAACAACACAACGTCTGAATGAGAGAATAGAGAAAAGTTGCAAGTATGAGAGNCAACAGACAAATAATGCGAGCGTGAAATATTCAAATATCGGTATATCCAAGTCGCAATAGATCGGCTACATTCGTACATTTCTCGCAAA--ACATTCGTCACAACTCGTCAAGAACTCGTGTAAATGTCGACTAGACTCGC----TAGAGTTCGTACATTCTCGTAGAAAAATCTTCCATTGT-GGAGAAAGTGTCGTACACACATCGTACAGAGGACGC-CTTAAA-CTCGCGTTAAAAAGAAACTGTCGTCCTGTTCTCGTGTCAGTGTGGAAGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCCNTCATCAA-AAACCATTGCAAACTCGTGGA-TTTTTTGGCGAGTTN-TAAC-TCCCCAGCACTCGTGA----TAACT--CGTAGTTCCAAATCGTGACAGTGTGACCGGGG
gi|1 : ATACGAATGT-TTAC-GCGTTC-AGTTCGACATTTCATCAACATTGTTACGAATTTTGACAATG-ATG-AT-----AAAAGTA-ATGTGTACAT------A-----TTTGTTGGTAAGTATAATTGTTCTCTACACACTGAC-TAACACGA-----CTATGCACA-TCGAAAG-GCAACAA-AGCATA-A-----GTTACCGCAGAACAAGACATTGTAAATTATAATTGTTACATGTAAAGGCAAAGATAACGAACAGTTTATAGCCTTTTCAACAACACCATGTCTGAATGAGAGAACGGAGGGAAGTTACAAGTATGAGAGCCACCACACAAATAATGAGAAAGTTAAATATTCTAATATCTATGTGTCCA-GTCGCAATAGATCGGCTACATTTGTACATTTCTCGCAAA--ACATTCATCACAACTCGTCAGGAACT-ATA-AAATACCGACTAGACTCGC----TAAACCTCGTATATTCTCGTAGAAATATCTTCCATTGT-GTAGAACGTTTCGTACACACATTGTACAGAGGACGC-CTTAAA-CTTGTATAAAAAAGAAACTATCGTCCTGTTCTCGTGCCATTGTGAAATAGAA----CTCGAGCAGAAATCGTACTGATGTCTCTAACATCAA-AAAGTATTGCAAACTTGTGGA-GTTTTTGGCGAGATT-GACC-TCCCCAGCACTCGTGA----TAACT--CGTACTTCCAAATCGTGACAGTGTGACCGGGG
gi|11 : acGATGTCTTTGCCATCAA-GAACCATTGCAAACTTGTAGA-TTTTT--GCGAGTCA-TAATATTCCCAGCACTTGTTA----TATCT--CGTAATTCCAGATCGTGACAGTGTAACCGGGcttaagattttaatagttttctttgtgggatgaaa
gi|12 : tcaaaagT-----TA-----TTT-TTAATAAATATAATTGTTCTCTACACACTGAC-TAACACAAA----CCATGTACA-TAGAAA--GCAACAGCGGCATA-A----AGTTACGGCAGAACAAGACATTGTA-----TCACTGTTACactt
gi|16 : CATTGTC-----TCATTGTTACAAAC------------------------ACAGCCTATATACCAACATCACGTTTGAATGA
gi|17 : AAGACGC-ATA-----TCACTGTTACATGT------------------------ACATCCTATTCAACAACACACCATC
gi|2 : ATACGAGTGTGT-AC-GTGTTC-AGTTCGACATTTCCACGACATTGTTACGAGTTTTGACGATG-ATG-ATTGCATAAAAGTA-ATATGCATAT-----TA-----TTT-TTAATAAATATAATTGTTCTCTACACACTGAC-TAACACAAA----CCATGTACA-TAGAAAG--CAACAGCGGCATA-A----AGTTACGGCAGAACAAGACATTGTA-----TCACTGTTACATGT------------------------ACAGCCTCTTCAACAACACAACGTCTGAATGAGAGAATAGAGAAAAGTTGCAAGTATGAGAGGAAACAGACAAATAATGCGAGCGTGAAATATTCAAAT-------------AATCGCAATAGATCGACTACATTCGTACATTTCTCGCAAA--ACATTCGTCACAACTCGTCAAAAACTCGTGTAAATGTCGACTATACTCGC----TAGAGTTCGTACATTCTCGTAGAAAACTCTTCCACTGT-GGAGAAAGTGGCGTACACAGATCGTACAGAGTACGC-CTTTAA-CTCGTGTC-AAAAGAAACTGTCGTCCTGTTCTCGTGTCAGTGTGGAAGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCCATCATCAA-AAAGCATTGGAAACTCGTGGA-ATTTTTGAAGAGTTT-TAAC-TCCCCAGCACTCGTGA----TAACT--CGTAGTTCCAAATCGTGACAGTGTGACCGGGG
gi|3 : CATTTCCTCGACGTTGTTACGATTTATGACGATG-ATG-ATTGCATAAAAGTA-ATGTGCATAT------A-----TTT-TTAATAAGTATGATTGTCCTTTACATACT-----AACACAA-----CCATGCACA-CAGAAAG-GCAACAA-AGCATATACTGTAGTTACCGCAGAACAAGACATTGTA-----TCACTGTTACATGT------------------------ACAGCCTATTCAACAACACAACGTCTGAATGAGAGAATAGAGAAAAGTTGCAAGTATAAGAGCCAACAGACAAATAATGCGAGCGTGAAATAGTCAAATATCGGTATATCCAAGTCGCAGTAGATCGGCTACATTCGCACATTTCTCGCAAACTATATTCGTCACAACTCGTTAAGAACTCGTATAAAAGTCGACTAGACTCGCCATATATAGTTCGTACATTCTCGTAGAAAAATCTTCCATTGT-GGAGAGAGTGTCGTATACACATCGTACAGAGGACGC-CTTAAA-CTCGTGTTAAAAAGAAACTGTCTTCCTGTTCTCGTGTCAGTGTGGAAGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCCTTCATCAA-AAATCATTGCAAACTCGGGGA-TTTTTTGACGAGTTT-TAAC-TCCCCGGCACTCGTGATAATTAACT--CGTAGTTCCAAATCGTGACAGT-TGACCGGGG
gi|4 : ATACGAGTGT-T-ACAGTGTTTTAATGCGAC-TTTCCTC-ACATTGTTACGAATTTTGACAATGGATGCATTGCATAAAAGTATATGTGCATATGCCTATAGATTTTTT-TTAATAAGTATAATTGTTCTCTACACACTGACTTAACACATAGATTCTATGCACATTAGAAAATGCAACAA-AGCATA-A----ctt
gi|5 : tcttggctgatgtcgaaagaaatgtctcttcattgtcgcccagtactcgccaccacgcgagaattttcaaaacggtttaaaattgtctgcgagtttttggtacctcatataaatgtcgaatattatgtttgtccaatcttgtggttgtatcggccatgcaatgtcgccaaccgcttctcgccattagaaagtatctcataaactggatatctgcgttgcggagttcgaaagaactataataacgatcactgctcaacatggcattcaacatacaagaggtttccaagactcctgctgacattcatATATTGTA-----TCACTGTTACATGT------------------------ACAGCCTAT---A-AACACAATGTCTGGATGAGAGAATAGCGAAAAGTCGCAAGTATGAGAGGCAACAGACAATTAATGCAAGCGTGAAATATTCAAATATCGGTATACCCAAGTCGCAGTAGATCGGCTACATTCGTACATTTCTCGCTAA--ACATTCGTCATAATTCGTCAGGAACTCGTGTAAATGTCGACTAGACTCGC----TAGAGTTCGTACATTCTCGTAGAAAAATATTCCATTGT-GGAGAAAGTGTTGTACACACATCGTACAGAGGACGT-CTTAAA-CTCGTGTTAAAAAGAAACTGTTGTCCTATTCTCATGTCAGTGTGGAGGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCTATCATCAA-AATGCATTGCAAACTCGTGGA-GTTTTTGACGAGTTT-TAAC-TCCCCAGCATTCGTGA----TAACT--CGTAGTTCCAAATGATGACAGTGTGACCGGGG
gi|6 : agtGTATATCCAAGTCCAAATAGGACGTCTACACTCGTACAATTCTCGTAGA--AATTTCGTCACAACTCGTCAAGAATCCGTGCAAATGTCGACTAGACACAT----CAGAGTTCGTACATTCTCGTAGAAAAATATCCCACTCT-GGAGAAATTGCCATACACAGATCGTAAAGATGTCAC-CCAAAA-CTC-----AA-----------------GTTCTCCTGTCAGTGTGGAAGAGAATTATCTCGAGTAG---TCCAACTGATGTCCACACCATCGA-AAACCATTGCAATCTCTTGGATTTTTTTGGCGAGTTA-TAAC-TCCCCAGCACTCGTGA----TAACT--CGTAGTTCTAAATCATctt
gi|7 : atAGAGCTTGTGCATTCTCGTAGAAAAATCTTCCATTCT-GGGGAAAATGTCGTACACACATCGTACAGAGGACGCATTTAAAGCTCGCGTTAAAAAGCATCTGTTTTCCCTCTCTCGTGT-AATGTATAAAAGAA----CTCGAACAGGA--CATGTTTA---CCCCTTCAACAA-ATACCATTGCCAACTCGTGAA-TTCTTTTGTGAGTTA-TAAC-TCCCCAGAACTCGTGA----TAACT--T---GTTCCAAATCGTGACAGTGTGACCAGGG
gi|8 : tgtcGA-GTTTGCGGCAAGTTTATAAC-TCATAA--ACTCGTGG----TAAATAATGTAG---CATA-CGTGACAGTGTGACCcttacgttcttattttgaaattttcctt
gi|9 : tCTTGT----CAGACTTGGT-CAT-CTCGTAGAAAAATCTTCCATTCTGGGAGAAA-TGTCGTACACACAT-GTACAGAGGACGCATTTAAAGCTCGCGTT-AAAAGCATCTGTTTTCCT-CTCTC--GTTAATGTATAA-AGAA----CTCGAACAGGA--CATGTTTACG--CCCTTCAACAATATACCATTGCCACTTCGTGAG-TTCTTTTGTGAGTTA-TAAC--CCCCAG-AATCGTGA----TAACT----TTGTTCCAAATCGTGACAG-GTGACAGGGttacagttgtcgtgtaacgtaggacttgaacacatggctgtggatgtcgaagaaatgcctcttcattgctgccagtactcgccacgcagcgcgagaattttaaacgcgtttaaaaattgtgcgagtattttccgtggaaaatgtcgtgtgtcgtcgtcggtgatgtgtcgtcagcatgcgccgcttctctccacgttagaagatctcta
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAGAATGTTTCTTCGTTGTGTCCAGTACTCGTCGAGCAGCGAGGAGAATTTCAAACGGTTTAAAATTGTCATGCGAGTTTTAGTATCATATAAATATCGAAGACACGTCGTCCAATCTCGTGTGCGTGTCGCCGAGC
Unaligned ( gi|13 ): AATGCAGAATAACGAGTTTGTGTGCATGGCCTATAGAATTTTTTTAAAAGCATTATAAATGTCTACAGACTACAGACACACAGATTATATAC
Unaligned ( gi|14 ): AGTATATGTTTCCCGTTTCTCGAGTAAGCAAAGAACTAGACATCGACATTTTTGCCCCTCCAGCAGATACGCTTTTGTAGGTGTATTCTTT
Unaligned ( gi|15 ): GCATGTTTTCCCGTAAACCCATTTTACGAACGACTGGTGACTGCATGCAAGATGGCA
Unaligned ( gi|18 ): ATTGATGTATGATTGTTTCACAATGTAAAGGCAAAGATAACGAACAG
Alignments
lowQualScore : 111 1 1 1 1 1 444444444444 22222 11 2 22222 11111 666666666666666666666666 11 1111 1 1 1111
lowQualScore : 777 3 0 3 3 6 1 0 0 3 0 111111111111 8 8 77777 8 11 0 8 00000 1 44444 444444444444444444444444 3 1 3 2 0 11 3 4444 0 0 5 3 1 1 2 55 1 1 44 3 3 3 2222 2 8 0 1 5 1 66 55 4 1 9999 66
lowQualScore : ... . . . . . . . . . . ............ . . ..... . .. . . ..... . ..... ........................ . . . . . .. . .... . . . . . . . .. . . .. . . . .... . . . . . . .. .. . . .... ..
lowQualScore : 777 3 7 3 2 5 2 0 0 2 0 666666666666 0 0 66666 0 22 0 0 22222 0 33333 222222222222222222222222 5 0 2 5 8 00 8 2222 1 7 7 0 4 4 7 33 3 9 77 0 0 0 1111 3 4 1 0 0 4 33 44 4 1 4444 11
consensus : ATACGAGTGT-T-AC-GCGTTC-AGTTCGACATTTCCTCGACATTGTTACGAATTTTGACGATG-ATG-ATTGCATAAAAGTA-ATGTGCATAT-----TA-----TTT-TTAATAAGTATAATTGTTCTCTACACACTGAC-TAACACAAA----CCATGCACA-TAGAAAG-GCAACAACAGCATA-A----AGTTACNGCAGAACAAGACATTGTA-----TCACTGTTACATGT------------------------ACAGCCTATTCAACAACACAACGTCTGAATGAGAGAATAGAGAAAAGTTGCAAGTATGAGAGNCAACAGACAAATAATGCGAGCGTGAAATATTCAAATATCGGTATATCCAAGTCGCAATAGATCGGCTACATTCGTACATTTCTCGCAAA--ACATTCGTCACAACTCGTCAAGAACTCGTGTAAATGTCGACTAGACTCGC----TAGAGTTCGTACATTCTCGTAGAAAAATCTTCCATTGT-GGAGAAAGTGTCGTACACACATCGTACAGAGGACGC-CTTAAA-CTCGCGTTAAAAAGAAACTGTCGTCCTGTTCTCGTGTCAGTGTGGAAGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCCNTCATCAA-AAACCATTGCAAACTCGTGGA-TTTTTTGGCGAGTTN-TAAC-TCCCCAGCACTCGTGA----TAACT--CGTAGTTCCAAATCGTGACAGTGTGACCGGGG
Reference ( family-3184 ) : ATACGAGTGT-T-AC-GCGTTC-AGTTCGACATTTCCTCGACATTGTTACGAATTTTGACGATG-ATG-ATTGCATAAAAGTA-ATGTGCATAT-----TA-----TTT-TTAATAAGTATAATTGTTCTCTACACACTGAC-TAACACAAA----CCATGCACA-TAGAAAG-GCAACAACAGCATA-A----AGTTACNGCAGAACAAGACATTGTA-----TCACTGTTACATGT------------------------ACAGCCTATTCAACAACACAACGTCTGAATGAGAGAATAGAGAAAAGTTGCAAGTATGAGAGNCAACAGACAAATAATGCGAGCGTGAAATATTCAAATATCGGTATATCCAAGTCGCAATAGATCGGCTACATTCGTACATTTCTCGCAAA--ACATTCGTCACAACTCGTCAAGAACTCGTGTAAATGTCGACTAGACTCGC----TAGAGTTCGTACATTCTCGTAGAAAAATCTTCCATTGT-GGAGAAAGTGTCGTACACACATCGTACAGAGGACGC-CTTAAA-CTCGCGTTAAAAAGAAACTGTCGTCCTGTTCTCGTGTCAGTGTGGAAGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCCNTCATCAA-AAACCATTGCAAACTCGTGGA-TTTTTTGGCGAGTTN-TAAC-TCCCCAGCACTCGTGA----TAACT--CGTAGTTCCAAATCGTGACAGTGTGACCGGGG
gi|1 : ATACGAATGT-TTAC-GCGTTC-AGTTCGACATTTCATCAACATTGTTACGAATTTTGACAATG-ATG-AT-----AAAAGTA-ATGTGTACAT------A-----TTTGTTGGTAAGTATAATTGTTCTCTACACACTGAC-TAACACGA-----CTATGCACA-TCGAAAG-GCAACAA-AGCATA-A-----GTTACCGCAGAACAAGACATTGTAAATTATAATTGTTACATGTAAAGGCAAAGATAACGAACAGTTTATAGCCTTTTCAACAACACCATGTCTGAATGAGAGAACGGAGGGAAGTTACAAGTATGAGAGCCACCACACAAATAATGAGAAAGTTAAATATTCTAATATCTATGTGTCCA-GTCGCAATAGATCGGCTACATTTGTACATTTCTCGCAAA--ACATTCATCACAACTCGTCAGGAACT-ATA-AAATACCGACTAGACTCGC----TAAACCTCGTATATTCTCGTAGAAATATCTTCCATTGT-GTAGAACGTTTCGTACACACATTGTACAGAGGACGC-CTTAAA-CTTGTATAAAAAAGAAACTATCGTCCTGTTCTCGTGCCATTGTGAAATAGAA----CTCGAGCAGAAATCGTACTGATGTCTCTAACATCAA-AAAGTATTGCAAACTTGTGGA-GTTTTTGGCGAGATT-GACC-TCCCCAGCACTCGTGA----TAACT--CGTACTTCCAAATCGTGACAGTGTGACCGGGG
gi|11 : acGATGTCTTTGCCATCAA-GAACCATTGCAAACTTGTAGA-TTTTT--GCGAGTCA-TAATATTCCCAGCACTTGTTA----TATCT--CGTAATTCCAGATCGTGACAGTGTAACCGGGcttaagattttaatagttttctttgtgggatgaaa
gi|12 : tcaaaagT-----TA-----TTT-TTAATAAATATAATTGTTCTCTACACACTGAC-TAACACAAA----CCATGTACA-TAGAAA--GCAACAGCGGCATA-A----AGTTACGGCAGAACAAGACATTGTA-----TCACTGTTACactt
gi|16 : CATTGTC-----TCATTGTTACAAAC------------------------ACAGCCTATATACCAACATCACGTTTGAATGA
gi|17 : AAGACGC-ATA-----TCACTGTTACATGT------------------------ACATCCTATTCAACAACACACCATC
gi|2 : ATACGAGTGTGT-AC-GTGTTC-AGTTCGACATTTCCACGACATTGTTACGAGTTTTGACGATG-ATG-ATTGCATAAAAGTA-ATATGCATAT-----TA-----TTT-TTAATAAATATAATTGTTCTCTACACACTGAC-TAACACAAA----CCATGTACA-TAGAAAG--CAACAGCGGCATA-A----AGTTACGGCAGAACAAGACATTGTA-----TCACTGTTACATGT------------------------ACAGCCTCTTCAACAACACAACGTCTGAATGAGAGAATAGAGAAAAGTTGCAAGTATGAGAGGAAACAGACAAATAATGCGAGCGTGAAATATTCAAAT-------------AATCGCAATAGATCGACTACATTCGTACATTTCTCGCAAA--ACATTCGTCACAACTCGTCAAAAACTCGTGTAAATGTCGACTATACTCGC----TAGAGTTCGTACATTCTCGTAGAAAACTCTTCCACTGT-GGAGAAAGTGGCGTACACAGATCGTACAGAGTACGC-CTTTAA-CTCGTGTC-AAAAGAAACTGTCGTCCTGTTCTCGTGTCAGTGTGGAAGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCCATCATCAA-AAAGCATTGGAAACTCGTGGA-ATTTTTGAAGAGTTT-TAAC-TCCCCAGCACTCGTGA----TAACT--CGTAGTTCCAAATCGTGACAGTGTGACCGGGG
gi|3 : CATTTCCTCGACGTTGTTACGATTTATGACGATG-ATG-ATTGCATAAAAGTA-ATGTGCATAT------A-----TTT-TTAATAAGTATGATTGTCCTTTACATACT-----AACACAA-----CCATGCACA-CAGAAAG-GCAACAA-AGCATATACTGTAGTTACCGCAGAACAAGACATTGTA-----TCACTGTTACATGT------------------------ACAGCCTATTCAACAACACAACGTCTGAATGAGAGAATAGAGAAAAGTTGCAAGTATAAGAGCCAACAGACAAATAATGCGAGCGTGAAATAGTCAAATATCGGTATATCCAAGTCGCAGTAGATCGGCTACATTCGCACATTTCTCGCAAACTATATTCGTCACAACTCGTTAAGAACTCGTATAAAAGTCGACTAGACTCGCCATATATAGTTCGTACATTCTCGTAGAAAAATCTTCCATTGT-GGAGAGAGTGTCGTATACACATCGTACAGAGGACGC-CTTAAA-CTCGTGTTAAAAAGAAACTGTCTTCCTGTTCTCGTGTCAGTGTGGAAGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCCTTCATCAA-AAATCATTGCAAACTCGGGGA-TTTTTTGACGAGTTT-TAAC-TCCCCGGCACTCGTGATAATTAACT--CGTAGTTCCAAATCGTGACAGT-TGACCGGGG
gi|4 : ATACGAGTGT-T-ACAGTGTTTTAATGCGAC-TTTCCTC-ACATTGTTACGAATTTTGACAATGGATGCATTGCATAAAAGTATATGTGCATATGCCTATAGATTTTTT-TTAATAAGTATAATTGTTCTCTACACACTGACTTAACACATAGATTCTATGCACATTAGAAAATGCAACAA-AGCATA-A----ctt
gi|5 : tcttggctgatgtcgaaagaaatgtctcttcattgtcgcccagtactcgccaccacgcgagaattttcaaaacggtttaaaattgtctgcgagtttttggtacctcatataaatgtcgaatattatgtttgtccaatcttgtggttgtatcggccatgcaatgtcgccaaccgcttctcgccattagaaagtatctcataaactggatatctgcgttgcggagttcgaaagaactataataacgatcactgctcaacatggcattcaacatacaagaggtttccaagactcctgctgacattcatATATTGTA-----TCACTGTTACATGT------------------------ACAGCCTAT---A-AACACAATGTCTGGATGAGAGAATAGCGAAAAGTCGCAAGTATGAGAGGCAACAGACAATTAATGCAAGCGTGAAATATTCAAATATCGGTATACCCAAGTCGCAGTAGATCGGCTACATTCGTACATTTCTCGCTAA--ACATTCGTCATAATTCGTCAGGAACTCGTGTAAATGTCGACTAGACTCGC----TAGAGTTCGTACATTCTCGTAGAAAAATATTCCATTGT-GGAGAAAGTGTTGTACACACATCGTACAGAGGACGT-CTTAAA-CTCGTGTTAAAAAGAAACTGTTGTCCTATTCTCATGTCAGTGTGGAGGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCTATCATCAA-AATGCATTGCAAACTCGTGGA-GTTTTTGACGAGTTT-TAAC-TCCCCAGCATTCGTGA----TAACT--CGTAGTTCCAAATGATGACAGTGTGACCGGGG
gi|6 : agtGTATATCCAAGTCCAAATAGGACGTCTACACTCGTACAATTCTCGTAGA--AATTTCGTCACAACTCGTCAAGAATCCGTGCAAATGTCGACTAGACACAT----CAGAGTTCGTACATTCTCGTAGAAAAATATCCCACTCT-GGAGAAATTGCCATACACAGATCGTAAAGATGTCAC-CCAAAA-CTC-----AA-----------------GTTCTCCTGTCAGTGTGGAAGAGAATTATCTCGAGTAG---TCCAACTGATGTCCACACCATCGA-AAACCATTGCAATCTCTTGGATTTTTTTGGCGAGTTA-TAAC-TCCCCAGCACTCGTGA----TAACT--CGTAGTTCTAAATCATctt
gi|7 : atAGAGCTTGTGCATTCTCGTAGAAAAATCTTCCATTCT-GGGGAAAATGTCGTACACACATCGTACAGAGGACGCATTTAAAGCTCGCGTTAAAAAGCATCTGTTTTCCCTCTCTCGTGT-AATGTATAAAAGAA----CTCGAACAGGA--CATGTTTA---CCCCTTCAACAA-ATACCATTGCCAACTCGTGAA-TTCTTTTGTGAGTTA-TAAC-TCCCCAGAACTCGTGA----TAACT--T---GTTCCAAATCGTGACAGTGTGACCAGGG
gi|8 : tgtcGA-GTTTGCGGCAAGTTTATAAC-TCATAA--ACTCGTGG----TAAATAATGTAG---CATA-CGTGACAGTGTGACCcttacgttcttattttgaaattttcctt
gi|9 : tCTTGT----CAGACTTGGT-CAT-CTCGTAGAAAAATCTTCCATTCTGGGAGAAA-TGTCGTACACACAT-GTACAGAGGACGCATTTAAAGCTCGCGTT-AAAAGCATCTGTTTTCCT-CTCTC--GTTAATGTATAA-AGAA----CTCGAACAGGA--CATGTTTACG--CCCTTCAACAATATACCATTGCCACTTCGTGAG-TTCTTTTGTGAGTTA-TAAC--CCCCAG-AATCGTGA----TAACT----TTGTTCCAAATCGTGACAG-GTGACAGGGttacagttgtcgtgtaacgtaggacttgaacacatggctgtggatgtcgaagaaatgcctcttcattgctgccagtactcgccacgcagcgcgagaattttaaacgcgtttaaaaattgtgcgagtattttccgtggaaaatgtcgtgtgtcgtcgtcggtgatgtgtcgtcagcatgcgccgcttctctccacgttagaagatctcta
blockSeqs : GT A T A G G G C T T GCCTATAGATTT . T AGATT T AT C T CTGTA G . . A G A G CT T CATA G G A G T TA A A CG G G G TTAT A A G T C TT TA A C TAAT AA
blockSeqs : T . . A G T . . T . TA . . A . G C . A G . . T C A G . T . . G A G T TA A A CT G G G . A A A . G T A . C . .
blockSeqs : . . A . . T . TA . . A . G . . A C . . T G . . . T . . G . . T TA A A TG A A G . A A T . T A T . C . .
blockSeqs : A . . . . . . . . . T . C . . T . . C C C T TT G C G . G . A . G T T . C . .
blockSeqs : . . . . . A . . C A C T TT T G A . G . A . C G T . C . .
blockSeqs : . . . . . . T . . . . . . . . . T . C T A . A . .
blockSeqs : T . C G A . . . .
blockSeqs : T A . . . .
blockSeqCons : TA********** A**** ***** ************************ TA
originalCons : ATACGAGTGT-T-AC-GCGTTC-AGTTCGACATTTCCTCGACATTGTTACGAATTTTGACGATG-ATG-ATTGCATAAAAGTA-ATGTGCATAT-----TA-----TTT-TTAATAAGTATAATTGTTCTCTACACACTGAC-TAACACAAA----CCATGCACA-TAGAAAG-GCAACAACAGCATA-A----AGTTACNGCAGAACAAGACATTGTA-----TCACTGTTACATGT------------------------ACAGCCTATTCAACAACACAACGTCTGAATGAGAGAATAGAGAAAAGTTGCAAGTATGAGAGNCAACAGACAAATAATGCGAGCGTGAAATATTCAAATATCGGTATATCCAAGTCGCAATAGATCGGCTACATTCGTACATTTCTCGCAAA--ACATTCGTCACAACTCGTCAAGAACTCGTGTAAATGTCGACTAGACTCGC----TAGAGTTCGTACATTCTCGTAGAAAAATCTTCCATTGT-GGAGAAAGTGTCGTACACACATCGTACAGAGGACGC-CTTAAA-CTCGCGTTAAAAAGAAACTGTCGTCCTGTTCTCGTGTCAGTGTGGAAGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCCNTCATCAA-AAACCATTGCAAACTCGTGGA-TTTTTTGGCGAGTTN-TAAC-TCCCCAGCACTCGTGA----TAACT--CGTAGTTCCAAATCGTGACAGTGTGACCGGGG
finalCons : ATACGAGTGT-T-AC-GCGTTC-AGTTCGACATTTCCTCGACATTGTTACGAATTTTGACGATG-ATG-ATTGCATAAAAGTA-ATGTGCATATTA----------TTT-TTAATAAGTATAATTGTTCTCTACACACTGAC-TAACACAAA----CCATGCACA-TAGAAAG-GCAACAACAGCATA-A----AGTTACNGCAGAACAAGACATTGTA-----TCACTGTTACATGT------------------------ACAGCCTATTCAACAACACAACGTCTGAATGAGAGAATAGAGAAAAGTTGCAAGTATGAGAGNCAACAGACAAATAATGCGAGCGTGAAATATTCAAATATCGGTATATCCAAGTCGCAATAGATCGGCTACATTCGTACATTTCTCGCAAA--ACATTCGTCACAACTCGTCAAGAACTCGTGTAAATGTCGACTAGACTCGC----TAGAGTTCGTACATTCTCGTAGAAAAATCTTCCATTGT-GGAGAAAGTGTCGTACACACATCGTACAGAGGACGC-CTTAAA-CTCGCGTTAAAAAGAAACTGTCGTCCTGTTCTCGTGTCAGTGTGGAAGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCCNTCATCAA-AAACCATTGCAAACTCGTGGA-TTTTTTGGCGAGTTN-TAAC-TCCCCAGCACTCGTGA----TAACT--CGTAGTTCCAAATCGTGACAGTGTGACCGGGG
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAGAATGTTTCTTCGTTGTGTCCAGTACTCGTCGAGCAGCGAGGAGAATTTCAAACGGTTTAAAATTGTCATGCGAGTTTTAGTATCATATAAATATCGAAGACACGTCGTCCAATCTCGTGTGCGTGTCGCCGAGC
Unaligned ( gi|13 ): AATGCAGAATAACGAGTTTGTGTGCATGGCCTATAGAATTTTTTTAAAAGCATTATAAATGTCTACAGACTACAGACACACAGATTATATAC
Unaligned ( gi|14 ): AGTATATGTTTCCCGTTTCTCGAGTAAGCAAAGAACTAGACATCGACATTTTTGCCCCTCCAGCAGATACGCTTTTGTAGGTGTATTCTTT
Unaligned ( gi|15 ): GCATGTTTTCCCGTAAACCCATTTTACGAACGACTGGTGACTGCATGCAAGATGGCA
Unaligned ( gi|18 ): ATTGATGTATGATTGTTTCACAATGTAAAGGCAAAGATAACGAACAG
Alignments
lowQualScore : 111 1 1 1 1 1 444444444444 22222 11 2 22222 11111 666666666666666666666666 11 1111 1 1 1111
lowQualScore : 777 3 0 3 3 6 1 0 0 3 0 111111111111 8 8 77777 8 11 0 8 00000 1 44444 444444444444444444444444 3 1 3 2 0 11 3 4444 0 0 5 3 1 1 2 55 1 1 44 3 3 3 2222 2 8 0 1 5 1 66 55 4 1 9999 66
lowQualScore : ... . . . . . . . . . . ............ . . ..... . .. . . ..... . ..... ........................ . . . . . .. . .... . . . . . . . .. . . .. . . . .... . . . . . . .. .. . . .... ..
lowQualScore : 777 3 7 3 2 5 2 0 0 2 0 666666666666 0 0 66666 0 22 0 0 22222 0 33333 222222222222222222222222 5 0 2 5 8 00 8 2222 1 7 7 0 4 4 7 33 3 9 77 0 0 0 1111 3 4 1 0 0 4 33 44 4 1 4444 11
consensus : ATACGAGTGT-T-AC-GCGTTC-AGTTCGACATTTCCTCGACATTGTTACGAATTTTGACGATG-ATG-ATTGCATAAAAGTA-ATGTGCATAT-----TA-----TTT-TTAATAAGTATAATTGTTCTCTACACACTGAC-TAACACAAA----CCATGCACA-TAGAAAG-GCAACAACAGCATA-A----AGTTACNGCAGAACAAGACATTGTA-----TCACTGTTACATGT------------------------ACAGCCTATTCAACAACACAACGTCTGAATGAGAGAATAGAGAAAAGTTGCAAGTATGAGAGNCAACAGACAAATAATGCGAGCGTGAAATATTCAAATATCGGTATATCCAAGTCGCAATAGATCGGCTACATTCGTACATTTCTCGCAAA--ACATTCGTCACAACTCGTCAAGAACTCGTGTAAATGTCGACTAGACTCGC----TAGAGTTCGTACATTCTCGTAGAAAAATCTTCCATTGT-GGAGAAAGTGTCGTACACACATCGTACAGAGGACGC-CTTAAA-CTCGCGTTAAAAAGAAACTGTCGTCCTGTTCTCGTGTCAGTGTGGAAGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCCNTCATCAA-AAACCATTGCAAACTCGTGGA-TTTTTTGGCGAGTTN-TAAC-TCCCCAGCACTCGTGA----TAACT--CGTAGTTCCAAATCGTGACAGTGTGACCGGGG
Reference ( family-3184 ) : ATACGAGTGT-T-AC-GCGTTC-AGTTCGACATTTCCTCGACATTGTTACGAATTTTGACGATG-ATG-ATTGCATAAAAGTA-ATGTGCATAT-----TA-----TTT-TTAATAAGTATAATTGTTCTCTACACACTGAC-TAACACAAA----CCATGCACA-TAGAAAG-GCAACAACAGCATA-A----AGTTACNGCAGAACAAGACATTGTA-----TCACTGTTACATGT------------------------ACAGCCTATTCAACAACACAACGTCTGAATGAGAGAATAGAGAAAAGTTGCAAGTATGAGAGNCAACAGACAAATAATGCGAGCGTGAAATATTCAAATATCGGTATATCCAAGTCGCAATAGATCGGCTACATTCGTACATTTCTCGCAAA--ACATTCGTCACAACTCGTCAAGAACTCGTGTAAATGTCGACTAGACTCGC----TAGAGTTCGTACATTCTCGTAGAAAAATCTTCCATTGT-GGAGAAAGTGTCGTACACACATCGTACAGAGGACGC-CTTAAA-CTCGCGTTAAAAAGAAACTGTCGTCCTGTTCTCGTGTCAGTGTGGAAGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCCNTCATCAA-AAACCATTGCAAACTCGTGGA-TTTTTTGGCGAGTTN-TAAC-TCCCCAGCACTCGTGA----TAACT--CGTAGTTCCAAATCGTGACAGTGTGACCGGGG
gi|1 : ATACGAATGT-TTAC-GCGTTC-AGTTCGACATTTCATCAACATTGTTACGAATTTTGACAATG-ATG-AT-----AAAAGTA-ATGTGTACAT------A-----TTTGTTGGTAAGTATAATTGTTCTCTACACACTGAC-TAACACGA-----CTATGCACA-TCGAAAG-GCAACAA-AGCATA-A-----GTTACCGCAGAACAAGACATTGTAAATTATAATTGTTACATGTAAAGGCAAAGATAACGAACAGTTTATAGCCTTTTCAACAACACCATGTCTGAATGAGAGAACGGAGGGAAGTTACAAGTATGAGAGCCACCACACAAATAATGAGAAAGTTAAATATTCTAATATCTATGTGTCCA-GTCGCAATAGATCGGCTACATTTGTACATTTCTCGCAAA--ACATTCATCACAACTCGTCAGGAACT-ATA-AAATACCGACTAGACTCGC----TAAACCTCGTATATTCTCGTAGAAATATCTTCCATTGT-GTAGAACGTTTCGTACACACATTGTACAGAGGACGC-CTTAAA-CTTGTATAAAAAAGAAACTATCGTCCTGTTCTCGTGCCATTGTGAAATAGAA----CTCGAGCAGAAATCGTACTGATGTCTCTAACATCAA-AAAGTATTGCAAACTTGTGGA-GTTTTTGGCGAGATT-GACC-TCCCCAGCACTCGTGA----TAACT--CGTACTTCCAAATCGTGACAGTGTGACCGGGG
gi|11 : acGATGTCTTTGCCATCAA-GAACCATTGCAAACTTGTAGA-TTTTT--GCGAGTCA-TAATATTCCCAGCACTTGTTA----TATCT--CGTAATTCCAGATCGTGACAGTGTAACCGGGcttaagattttaatagttttctttgtgggatgaaa
gi|12 : tcaaaagT-----TA-----TTT-TTAATAAATATAATTGTTCTCTACACACTGAC-TAACACAAA----CCATGTACA-TAGAAA--GCAACAGCGGCATA-A----AGTTACGGCAGAACAAGACATTGTA-----TCACTGTTACactt
gi|16 : CATTGTC-----TCATTGTTACAAAC------------------------ACAGCCTATATACCAACATCACGTTTGAATGA
gi|17 : AAGACGC-ATA-----TCACTGTTACATGT------------------------ACATCCTATTCAACAACACACCATC
gi|2 : ATACGAGTGTGT-AC-GTGTTC-AGTTCGACATTTCCACGACATTGTTACGAGTTTTGACGATG-ATG-ATTGCATAAAAGTA-ATATGCATAT-----TA-----TTT-TTAATAAATATAATTGTTCTCTACACACTGAC-TAACACAAA----CCATGTACA-TAGAAAG--CAACAGCGGCATA-A----AGTTACGGCAGAACAAGACATTGTA-----TCACTGTTACATGT------------------------ACAGCCTCTTCAACAACACAACGTCTGAATGAGAGAATAGAGAAAAGTTGCAAGTATGAGAGGAAACAGACAAATAATGCGAGCGTGAAATATTCAAAT-------------AATCGCAATAGATCGACTACATTCGTACATTTCTCGCAAA--ACATTCGTCACAACTCGTCAAAAACTCGTGTAAATGTCGACTATACTCGC----TAGAGTTCGTACATTCTCGTAGAAAACTCTTCCACTGT-GGAGAAAGTGGCGTACACAGATCGTACAGAGTACGC-CTTTAA-CTCGTGTC-AAAAGAAACTGTCGTCCTGTTCTCGTGTCAGTGTGGAAGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCCATCATCAA-AAAGCATTGGAAACTCGTGGA-ATTTTTGAAGAGTTT-TAAC-TCCCCAGCACTCGTGA----TAACT--CGTAGTTCCAAATCGTGACAGTGTGACCGGGG
gi|3 : CATTTCCTCGACGTTGTTACGATTTATGACGATG-ATG-ATTGCATAAAAGTA-ATGTGCATAT------A-----TTT-TTAATAAGTATGATTGTCCTTTACATACT-----AACACAA-----CCATGCACA-CAGAAAG-GCAACAA-AGCATATACTGTAGTTACCGCAGAACAAGACATTGTA-----TCACTGTTACATGT------------------------ACAGCCTATTCAACAACACAACGTCTGAATGAGAGAATAGAGAAAAGTTGCAAGTATAAGAGCCAACAGACAAATAATGCGAGCGTGAAATAGTCAAATATCGGTATATCCAAGTCGCAGTAGATCGGCTACATTCGCACATTTCTCGCAAACTATATTCGTCACAACTCGTTAAGAACTCGTATAAAAGTCGACTAGACTCGCCATATATAGTTCGTACATTCTCGTAGAAAAATCTTCCATTGT-GGAGAGAGTGTCGTATACACATCGTACAGAGGACGC-CTTAAA-CTCGTGTTAAAAAGAAACTGTCTTCCTGTTCTCGTGTCAGTGTGGAAGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCCTTCATCAA-AAATCATTGCAAACTCGGGGA-TTTTTTGACGAGTTT-TAAC-TCCCCGGCACTCGTGATAATTAACT--CGTAGTTCCAAATCGTGACAGT-TGACCGGGG
gi|4 : ATACGAGTGT-T-ACAGTGTTTTAATGCGAC-TTTCCTC-ACATTGTTACGAATTTTGACAATGGATGCATTGCATAAAAGTATATGTGCATATGCCTATAGATTTTTT-TTAATAAGTATAATTGTTCTCTACACACTGACTTAACACATAGATTCTATGCACATTAGAAAATGCAACAA-AGCATA-A----ctt
gi|5 : tcttggctgatgtcgaaagaaatgtctcttcattgtcgcccagtactcgccaccacgcgagaattttcaaaacggtttaaaattgtctgcgagtttttggtacctcatataaatgtcgaatattatgtttgtccaatcttgtggttgtatcggccatgcaatgtcgccaaccgcttctcgccattagaaagtatctcataaactggatatctgcgttgcggagttcgaaagaactataataacgatcactgctcaacatggcattcaacatacaagaggtttccaagactcctgctgacattcatATATTGTA-----TCACTGTTACATGT------------------------ACAGCCTAT---A-AACACAATGTCTGGATGAGAGAATAGCGAAAAGTCGCAAGTATGAGAGGCAACAGACAATTAATGCAAGCGTGAAATATTCAAATATCGGTATACCCAAGTCGCAGTAGATCGGCTACATTCGTACATTTCTCGCTAA--ACATTCGTCATAATTCGTCAGGAACTCGTGTAAATGTCGACTAGACTCGC----TAGAGTTCGTACATTCTCGTAGAAAAATATTCCATTGT-GGAGAAAGTGTTGTACACACATCGTACAGAGGACGT-CTTAAA-CTCGTGTTAAAAAGAAACTGTTGTCCTATTCTCATGTCAGTGTGGAGGAGAA----CTCGAGCAGAAATCGTACTGATGTCTCTATCATCAA-AATGCATTGCAAACTCGTGGA-GTTTTTGACGAGTTT-TAAC-TCCCCAGCATTCGTGA----TAACT--CGTAGTTCCAAATGATGACAGTGTGACCGGGG
gi|6 : agtGTATATCCAAGTCCAAATAGGACGTCTACACTCGTACAATTCTCGTAGA--AATTTCGTCACAACTCGTCAAGAATCCGTGCAAATGTCGACTAGACACAT----CAGAGTTCGTACATTCTCGTAGAAAAATATCCCACTCT-GGAGAAATTGCCATACACAGATCGTAAAGATGTCAC-CCAAAA-CTC-----AA-----------------GTTCTCCTGTCAGTGTGGAAGAGAATTATCTCGAGTAG---TCCAACTGATGTCCACACCATCGA-AAACCATTGCAATCTCTTGGATTTTTTTGGCGAGTTA-TAAC-TCCCCAGCACTCGTGA----TAACT--CGTAGTTCTAAATCATctt
gi|7 : atAGAGCTTGTGCATTCTCGTAGAAAAATCTTCCATTCT-GGGGAAAATGTCGTACACACATCGTACAGAGGACGCATTTAAAGCTCGCGTTAAAAAGCATCTGTTTTCCCTCTCTCGTGT-AATGTATAAAAGAA----CTCGAACAGGA--CATGTTTA---CCCCTTCAACAA-ATACCATTGCCAACTCGTGAA-TTCTTTTGTGAGTTA-TAAC-TCCCCAGAACTCGTGA----TAACT--T---GTTCCAAATCGTGACAGTGTGACCAGGG
gi|8 : tgtcGA-GTTTGCGGCAAGTTTATAAC-TCATAA--ACTCGTGG----TAAATAATGTAG---CATA-CGTGACAGTGTGACCcttacgttcttattttgaaattttcctt
gi|9 : tCTTGT----CAGACTTGGT-CAT-CTCGTAGAAAAATCTTCCATTCTGGGAGAAA-TGTCGTACACACAT-GTACAGAGGACGCATTTAAAGCTCGCGTT-AAAAGCATCTGTTTTCCT-CTCTC--GTTAATGTATAA-AGAA----CTCGAACAGGA--CATGTTTACG--CCCTTCAACAATATACCATTGCCACTTCGTGAG-TTCTTTTGTGAGTTA-TAAC--CCCCAG-AATCGTGA----TAACT----TTGTTCCAAATCGTGACAG-GTGACAGGGttacagttgtcgtgtaacgtaggacttgaacacatggctgtggatgtcgaagaaatgcctcttcattgctgccagtactcgccacgcagcgcgagaattttaaacgcgtttaaaaattgtgcgagtattttccgtggaaaatgtcgtgtgtcgtcgtcggtgatgtgtcgtcagcatgcgccgcttctctccacgttagaagatctcta
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAGAATGTTTCTTCGTTGTGTCCAGTACTCGTCGAGCAGCGAGGAGAATTTCAAACGGTTTAAAATTGTCATGCGAGTTTTAGTATCATATAAATATCGAAGACACGTCGTCCAATCTCGTGTGCGTGTCGCCGAGC
Unaligned ( gi|13 ): AATGCAGAATAACGAGTTTGTGTGCATGGCCTATAGAATTTTTTTAAAAGCATTATAAATGTCTACAGACTACAGACACACAGATTATATAC
Unaligned ( gi|14 ): AGTATATGTTTCCCGTTTCTCGAGTAAGCAAAGAACTAGACATCGACATTTTTGCCCCTCCAGCAGATACGCTTTTGTAGGTGTATTCTTT
Unaligned ( gi|15 ): GCATGTTTTCCCGTAAACCCATTTTACGAACGACTGGTGACTGCATGCAAGATGGCA
Unaligned ( gi|18 ): ATTGATGTATGATTGTTTCACAATGTAAAGGCAAAGATAACGAACAG