lowQualScore : 1111111111111111111111111111111 1111111111111 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 222222222222222222222222222222 1111111111111 1111111111111111 33333333333333333333333333333333333333 11111111111111111111111111111111111111111111111
lowQualScore : 5555 1111111111111111111111111111111 4 1111111111111 2 99999999999999999999999999999 222222 3333 77777777777777777777777 77777777777 333 1 44 2 1 777 77777777 4 33 44 1 22 4 1 1 66666666 7777777 1 2 4 1 22 555555555555555555 3333333333333333 111 888888888 22 11 444444444444 55555555 11 5555555 11111 33333333 1 2222 11 888888888888888888888888888888888888888888888888888888888888888888888888 22 22222 11 33333333 1111111111 4 1 444 1 3333 33 33333333 222 1 1 22222 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 55 1 55 33 88888 1 444 222222222222222222222222222222 4 1111111111111 22 4 4 22 66666 222222222 222 6666666666666666 33 33 1 33 66666666666 33333 8888888888888 1 333333333333 4 77777777777777777777777777777777777777 555555555 1 33 33 1 99999 1 333333 444444444444444 1 888888888888888888 5555555555555555 11 2222 11 44444444444444444444444444444444444444444444444 1 1 1 111 11 1 1 1 1 11 2 1 33 11 7777777 555 33 1 66666666666666 1 66666 1 333333333 1 99999999999999 222 11 1 1 1 333 1 1 33 333
lowQualScore : 6 2222 0000000000000000000000000000000 0 6666666666666 6 4 0 66666666666666666666666666666 333333 4 6666 22222222222222222222222 66666666666 444 4 5 77 0 5 3 000 99999999 0 4 55 3 22 5 00 0 5 5 55555555 4444444 5 3 0 5 2 44 111111111111111111 88 7777777777777777 8 3 444 8 8 222222222 0 55 8 11 1 111111111111 6 66666666 8 8 33 4444444 3 88888 55 55555555 0 9 3333 33 2 999999999999999999999999999999999999999999999999999999999999999999999999 0 8 44 33333 88 11 6 8 77777777 8 8888888888 6 0 0 000 2 0 4444 99 66666666 0 666 3 2 0 88 5 1 8 88888 0 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 6 55 6 7 6 55 44 22222 5 6 888 444444444444444444444444444444 0 5555555555555 33 0 6 0 11 6 77777 666666666 777 4444444444444444 66 77 55 3 00 11111111111 66666 1111111111111 6 5 999999999999 0 44444444444444444444444444444444444444 6 2 888888888 5 55 4 33 0 55555 5 222222 333333333333333 3 888888888888888888 5555555555555555 88 8888 4 0 33 44444444444444444444444444444444444444444444444 0 0 5 3 111 33 0 0 3 3 88 7 6 7 3 0 7 00 0 88 6666666 6 6 111 7 00 1 3 44444444444444 3 00000 3 3 555555555 3 33333333333333 333 7 7 3 3 88 0 0 0 3 888 0 9 3 33 555 6
lowQualScore : . .... ............................... . ............. . . . ............................. ...... . .... ....................... ........... ... . . .. . . . ... ........ . . .. . .. . .. . . . ........ ....... . . . . . .. .................. .. ................ . . ... . . ......... . .. . .. . ............ . ........ . . .. ....... . ..... .. ........ . . .... .. . ........................................................................ . . .. ..... .. .. . . ........ . .......... . . . ... . . .... .. ........ . ... . . . .. . . . ..... . ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . . .. . . . .. .. ..... . . ... .............................. . ............. .. . . . .. . ..... ......... ... ................ .. .. .. . .. ........... ..... ............. . . ............ . ...................................... . . ......... . .. . .. . ..... . ...... ............... . .................. ................ .. .... . . .. ............................................... . . . . ... .. . . . . .. . . . . . . .. . .. ....... . . ... . .. . . .............. . ..... . . ......... . .............. ... . . . . .. . . . . ... . . . .. ... .
lowQualScore : 0 0000 0000000000000000000000000000000 0 0000000000000 0 0 0 55555555555555555555555555555 000000 0 5555 00000000000000000000000 00000000000 000 0 5 55 0 0 0 000 55555555 0 0 00 0 55 5 00 0 5 5 55555555 5555555 0 0 0 0 5 00 333333333333333333 66 2222222222222222 0 2 000 0 0 888888888 8 00 0 00 0 000000000000 7 00000000 0 0 22 0000000 2 55555 88 22222222 8 2 2222 88 2 222222222222222222222222222222222222222222222222222222222222222222222222 6 0 22 66666 88 00 0 0 00000000 0 8888888888 0 0 0 222 5 0 2222 88 22222222 8 000 0 8 8 66 0 0 0 44444 8 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 0 00 0 0 0 00 00 00000 0 0 000 000000000000000000000000000000 0 0000000000000 00 0 0 0 00 0 00000 000000000 000 0000000000000000 00 33 77 3 00 77777777777 00000 0000000000000 0 0 000000000000 0 00000000000000000000000000000000000000 0 5 555555555 0 00 0 55 5 55555 0 555555 000000000000000 3 000000000000000000 3333333333333333 33 3333 0 2 88 55555555555555555555555555555555555555555555555 0 0 5 2 555 88 0 0 3 3 33 3 7 3 3 7 3 77 7 33 7777777 7 7 000 3 33 0 3 77777777777777 3 00000 7 3 777777777 3 33333333333333 333 3 3 5 2 88 0 0 0 2 888 0 0 2 88 333 7
consensus : GTATAATTCATT-CTATTTA-TAAA----CAAATATTAAATACAG-TAG--ACTTAGTATTTC-AGCCAATTTAATAAA----ATTCCTATGGGGTCACNATGTGAAAAGTTGTCTGAAGTCCNAACAC--AAAACAAGATACATACAGTCANTATTNGACAAATATATACATGTTACACATCAACTTGATCAATGTGTAGTGCTNTTGAAATTATANAAAATTCTTTGATTCCAAAACTAATGTGTCGGCC--CTCATCAGTGTTAAGATAATTC--TGCAATTCTTTTGT-CNTGCCCTCTCTTCTTTTACATGCNT-GGGGACTTGCACGGATACTNAAA-TCTCCAACAAAGTAT--ACATTGTTGCAAGGTTCTCACATTGGTAAAATACCAAA-CAGCCTTGNTATANTTTTTTCTATTGTAGTAGAATATTGTTTT---T----GGTAAAAGGGAATAGCCTTGTTGATAGGGTTGA-TCTAATAACTGGAGTTG---AT-GAT-GATTCGGT---C--AGTATGCCTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTTAAAAT-GCTGC-TGTAC-CAAGTA-TTATC-------AAATG---A-ATCTGTAAA-AAA-AA-AAGAATATTTTTTCAATA-TTGTGCA--AATGCCAANTC--G-TATTGG-ACAAAGCATGCACATTTTANAAGATACN-AACA--ATATAT-TTTTTAAAAATA-T-CATCATATT-AT-GCACAAACATAACCATT-TGTATT--TAGAAGCAT-AAAAAA-NGATG--AGGGACT-CATAA-ATNAA-NCCGGGCCA-ATATCAGGGAT-GCAGTGC-TGNAT-C-T--AGAGGGG-ACAATAAAATTCCACCTTCACCAACCTCA--GCTTCAACATTATTAAAAA-TGGATATTCTTTT-GTTGT---TCATTTTNG-GATCTTCGACAC-----------CCCCCCCCAC---G-AGT-TTCCGT--------T--CCC-----T-TATANTTTTTATT---GC--AAAAATAGGTTTTGGTTTTTGGAAAGCAAATCCGTTCCTGAACTGCAGGGTCTTGCTTTCTAATANCTAAAATTANTTGAAG----------GCAA---TAAATGAANACAAATGNATATTCTACTGATGCAATNCACAATNTTACAAATNNTATGA---ACATNGTAGTAATNCTATTATTGAGTTAAAAAAATCAATNTTGCATTNTTTT--AAAATCTTGCCAGTCATATGAATATGTGTGTNTGTGTTGTGGCTATGTGCAGGNCACGATAAGACATGATATCTCAGA--AGACCAAAAACCCTGCAAATCATGTATGTAAAACAAATTGACT--AAATAATTTTAATAAAATGCTTTAGATATGC----TTAAATGAATTGTTTTGTAA------TAGATCATGCCAT-GGCAAAA--ATATATAAAAGTCGATCTGATCGTAATTTAAA--TTATCAAACTATGTTGTATATA--ATTTCTTTATGCATATGAGGCCTGATGCATCCACCAATTAGACACTGTATACATGTACAGTAGTACACA-CCACATCTTGTAACAAAATTTAG-----TTACAT--GACATTTATTTATCATCACAGGCACCAGAAGTA-GTACCAAGGNNNNNNNTATACACGT-ACATAATTGTTGCCCCCCCCCCTTGTTT--------TTCAACGCAAACACACATTTTT-TGGAATCCCCGTCATCTCAAAACTTACAGCAGAAA--CT-GCCCCG-CAAAGCNG-ACTTCA-TGAAGGTGAATGGGTGGGGAAATCATTGTTTCATNATTTTACTTTTCATTGGGTTGAAGGGTTGCGTGTGTTTGGGGGGGGGGGGGGGTATGGACTATGGTTGCGTGTGTTGGGGAGNGGGGTA-GTGCNATAAGACGTGTCTANTCTCGGGTNAGAAC---TTTATGCATGTACTAATTTGACTAACTTACTACACTGGCCCCACAGTTAAA-TTACATTC-AA-TG--A---------TTGATAAAACAA---A-TTACG----TTTGAA--ACGTG----TCGATCTGTTNTTCT--CTCCC-C---G---TTGNA-TGGGG--CCTNCANTGGCT---ACGG---CTA-CA-GCAACGTAAACAATTA-TTTTT--CTGT-G-AC-TTT-GTTCT--GAAAATGGGGTATA-TCTCGCTCCTACTACCCTTT--CTG--G---GTACCGTGTGTCACTTTTACATTC--CCCCATGCGCAG--TCTTCAC-AA--TT---CAA-AG-GCGA-ATTCA-----AAGCAATCTCGTT-AAAACATCTGCATCT-AAACA-CCCAACCG-TGTGC------------TTTGA---CGGAGGTCATGGCGGANAATTCTTCCCG-CGAT-TCTG-ATTGG-CTGTG-CGGAAGATG-GTAACTCCAC-CTCCCCTGACGAC
Reference ( gi|1 ) : GTGTAATTCAGTATTATTTAATAAAAACACAATTATTTAA-ACAGATAGTGACTTAGTATTTCCAGCCAATTTAA-AGAGAGCATTC-TGTGGGGTCACAATG-GAA-------CTGAA-TCGTAACACTCAAGACAAGATACATA-AGTCAATATAGGACAAAGA---ATAT-TTAT-CATCAAATTGATCAAT-TGCAGTAGTGTTGAAATTATAAAAAATTCT--GATTCCAAAA-TAATGTCTCTGCATGCTCATCAGTGTTAAAATAACTCAGTGCAATTCTTTTGTTCATGTCC-CTCTTCTTTTACATACTTTGGGAACTTGCACAAATACAAAAAATCTCCAACAAAGTATCAACAT-GTTGCAAGGC-C--A-ATTGGTAAAATATCAAATCAGCCTTGGTAT-TTTTTTTCTATTGTAGTAGAATGTTGTTTT---T----GGTAAAAAGGAGTAGC-T-GTTGATAGGGTTGA-TCTAATAACTGGAGTTG---AT-GAT-GATTCAGT---CTGAGTATGCCTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTAAAAATCGCTGC-TGTAC-CAAGTA-TTATCG------AAATG---A-ATCTGTAAACAAAGAACAAGAATATTTTTTTAATA-T-ATGCA--AATACCAAATC--A-TAATGG-ACAAAGCATGCACATTATGTAAGA-ACA-AACA--ATTTTT-TTTTTAA---TA-TGCATCATATT-ATTGCACAAACATAACCATT-TGTATT--TAGAGGCAT-AAAAAA-AAATT--AGGGACT-CATAA-ATGAA-TTTGGGTCATATATCAGGGAT-GCAGT-C-TGGAT-C-A--AGAGGGACACAATACAGTTTCCCCTTCACCAACCTCA--TCTTCAATATCATTAAAAA-TGGATCTTCTTTT-GTTGT---TCATTTCTA-GATCTTCGACAA-----------CCCACCCAATGGTATAGTTTTCCATTA----TAT--CCCGGATTTATATACATTTCATT---GC--AAAAATAGGCTTTG--TTT-G--AA-CAA--TAATTTCTGAACT-CA--GTCTTGC--TCTAATATCT-AAATTA--TGAAGCTTATTGTGTACAATAATAAATGAACATAGATAAATATTCTATTGTTG-AGTT-----TCTTA-AAATCTT-TGACCAACATTGTAATAGTGCTACTG-----------AAA-C--TTTTGCATTCTTTTTAAAAATCTTGC-AGTCAT-TGAA-ATGTGCATGTGT-TTGTGGCTCTGTGCAGGA---AATAG---------TTTCAAAAGAGATC-AAAACCCTGCAA----TATATGTAA------TTGTTTGTAAA-AGTTTTGATAAG-TACTACA-ATATGCGCTCCTAAATTGATT-TTATGAAAATACTTTAGAT-ATGCCTTTGGCAAAATAATGT-TAAAAGTCGATCTGATCATAATTCAAAACTTACCATACTATGTTGTACATATGATTTCTTTTAGCATACA--TCCTGATGCATACACTA-TAAGACAC---AT---TGTAT-------CACATCCAGCTCTTGTA-CAAAATTTAGAGTCATTACACACGACATTTATTTATTTTCACA-GCATCAGAAGTATGTAATAGGGAGTTTTCTATACG-GTCACATAGCTAGTACACCCCCCCCCCCTTTAAAAAAACCCCAA---AAATACACATTTTTATGGAATCCCCGTCATCTCAAAACTTACAGCAGGAAATCT-GCCCCGCCAAAGCCGCACTTAACTGAAGGTGAAT-G-TCGGGAAATC---------TAAGTCTACGTTTCATTTAGGTGCATAGGTGCGT-TGTTTTGTTGGGTCGG-----------TAAGG-----------GGGGGGGGGGGTATGTGCAGTAAGACGTG-CTATTCTCCAGTCAGAACACACGTATGCATGTACTA--TTATCTAA-T-AC-AAACTG---TCACAGTTAAA-TTACATTC-A--TG--A---------TTGATAAAACAA---ATTTACAT---TTTGAA--ACGTG----TCGATCTGTTTTTCT--CTC-------G--TTTGAA-TGGG---CCTACACTGGCTT--ACAG---CTA-CA-GCAACGTAAACAATTA-TATTT--CTGT-G-AC-TTT-GTTCT--GAAAAT-GGGTATA-TCTCGCTCCTACTAAGCCTT--CTG--GTCAATACCGTGTGTCACTTTTACATTTTACCCCATGCGCAGGTTTTTCAC-AA--TT---CAATAATGCGA-ATTCA----TAAGCAATCTCGTT-AAAACATCTGCATCTAAAACAGCCCAACCA-TGTG-------------TTTGA---CGGAGGTCATGGCGGAAAATTCTTCCCG-CGAT-TCTG-ATTGGTCGGTG-CGGAAGAT--GTAACTCCTCACTCCCCTGACGAC
gi|2 : GTATAATTCATT-CTATTTA-TAAA----CAAATATTAAATACAG-TAG--ACTTAGTATTTC-AGCCAATTTAATAAA----ATTCCTATGGGGTCACAATG-GAA-------CTGAA-TTCCAACAC---AAACAAGAT-CATA-AGTCAATAT-TGACAAATATATATAT-TTAC---TCA---TGATCAATGTATAGT--TCTTGAAAT-ATAAAAA-TTCTTTGATTCCAAAA-TAATGTATCTGC---TTCATCAGTGTTAAAATAATT----G-AATTCTTTTGT-CTTGTCC--TCTTCTTTTACATGCTT-GGGAATTTGCACAGATATTAAAA-TCTCCA-CAAAGTAT--ACATTGTTGCAAGGTTC--ACATTG-TAAAATA-CAAA-CAGC-TTGGTATATTTTTTTCTATTGTAGTAGAATATTGTTTT---TTGCCGGTAAAAGGGA-TAGC-TTGTTGATAAGGTTGA-TCTAATAACTG-AGTTG---AT-GATTGATTCG-----C--AGTATGC-TCTG-T--TGATGAAGA------------GT-GTGATTCTTTGACTTAAAAT-GCTGCCTGTAC-CAAGTA-TTATC-------AAATG---ACAT-TGTAAGAAAACAACAAGAATATTTTTT-AATA-TTGTGCA--AATGCCAATTC--AGTATTGG-ACAAAGCATGCACATT-TAGAAGAGATATAACA--ATTTAT-CTTTTAA---AA-------------AT-GCACAAACATCAC--TT-TGTATT--TAGAAGCAT-AAAAAATGCATT--AGG-ACT-CATAA-ATTTA-ACTGGGCCA-ATATCAGGGAT-GCAGT-GATGGAT-CTATTAGAGGGG-ACAATAAATTCTCACCTTCACACACCTCAAAGCTTCAACATTATTAAAAAAGGGATATTCTTTTTGTTGT----CATTT-TA-G-TTTTC----------------CCCCCCC-------------CCC----------C--CCCAG---TGTATAGTTTTAATT---GC--AAAAATAGGTTTTG--TTTTG--AAGCAA--TCATT-CTGAACT-CA--GTCTTGC--TCTAATATC--AAATTAA-TGAAA----------GCAA-----AAT-AACAT---TATATATTTTACTGATGCAATACACAATGTTACAAATAATATGA---ACATAA-AATAATTCTATTATTGAGTTAAAAAAATC--TGTTGCATTGTTT---AAAATTTTGCCAGTCATATGAA--TATG--TGTGT-TTGTG-TTATGTGCAGGT---AATAAGACATGATATCTCAGA------C-AAAACCCTGCAAATCATGTATGTAAAACAAATTGACT--AAATAATTTTAATAAAATGCTTTAGATATGC----TTAAATGAATTGTTTTGTAA------TAGATCATGCCAT-GGCAAAA--ATATATAAAAGTCGATCTGATCGTAATTTAAA--TTATCAAACTATGTTGTATATA--ATTTCTTTATGCATATGAGGCCTGATGCATCCACCAATTAGACACTGTATACATGTACAGTAGTACACA-CCACATCTTGTAACAAAATTTAG-----TTACAT--GACATTTATTTATCATCACAGGCACCAGAAGTA-GTACCAAGG
gi|3 : TGGGGTCACTATGTGAAAAGTTGTCTGAAGTCCAAACA---AA---AAGATAC-TACAGTCATTATTGG-CAAATA----CATGTTATACATCAACTTGATCAAT--GTA-TGCTATTGAA--TATATAAAATTCTT-GATTCCAAAACTAATGTGTTGGCC--CTCATTAGTGTTAAGATAA-TC--TGCAATTCTTTTGT-CATGCCCTCTTTTCTTTTACATACGT--GGGACTTGCACGA-TACTCAAA-TCTCCAACAA-GTA-----AT-GTTGCAAGGT-CTCACATTGGTAAAATACCAAA-CAGCCTTGCTAT-ATTTTTTCTATTGTAGTAGAATA-TGTTTTGCCG----GGTAACAGGGA-TA-C-T--TT------GTTGACTCTAATAATTGGAGATG---ATCGAT--ATTCG------CAAGTATG-CTCTGTT--TGATGAAGA------------GTGGTGATCTTTTGACTTAAAAT-GCTGC-TGTACACAAGTATTTATC-------AAATG---A-ATCTGTAGA-AGAGAA----AGTA-TTTTTTAATATT-GTGCA--AATGCCAAATCCAG-TATTGGAACAAAGCATG-ACAATTTAGAAGATGCT-AACATTATATTC-TATAAAA---TA-T-CATCATATTCATCGCACGAAAAT----ATT-TGTATT--TAGAAGCAT-AGAAAA-TGA-G--AGGGACTACATAA-TTAAAGTTCGGGCCA-ATATCAGGGATCGCAATGC-TGTATAC-T--AGAGGGG---AATAAA--TTCTACTTC-CCAACCTCA--GCTTACATAT-ATTAAAAA-TGGATATTCTTTT-GTTATAAATCATTTTAG-GA--TTCGAta
gi|10 : tattTTTCTATTGTAGTAGA--------------------TAAA--GGGATGGC-TTGTTGATGGGGTTGA-TCTGATAACTGGAGTTG---TG-GAT-GATTAAGTATACT-AGTA---CTCTA-TTCTGCT-----------------GT-GTAATTCTTTGAC-----GT-GCTGC-TGTAC-CAAGTA-TTATCATTGTGCAAATGCCAA-ATC-ATAAAC
gi|11 : TATTGTTAT---T----GGTATAAGGGA-TGGCCT-GTT----------A-TCTGGCAACTGGAGTTGTAGAT-GAT-GATTCAGT---------ATGC-TCTG-T--TGTTGAAGAATATTCTCTGCTGC-ATAGTTCTTTGAC-GAAAAT-GCCGC-TGTAC-TAA
gi|19 : AAAAGGGAA-AGCCT-GTTGATAGGGTTGA-TCTAATAACTGAAGTTG---AT-GAT-GATAC---------AGTATG-CTCTG-T--TGATGAATA------------GT-GTGGTTC
gi|21 : T-GTAGGTTTTTGACTTG---CTGCTAC-TGTAC-CAAGTA--TATCC------AA--G---A-ATCTGTGAA-AA-----AAGAATATTTTT
gi|8 : GAATATTTTTT-AATA-TTGTGCA--AATGCCAA----------------------TGCACATTTAGAAAGATGCT-AACA--CTATAT-CTTATAAAAATA-T-CATCATAGT-AT-GCTCAAACATATC--TT-TGTATT--TAGAAGCAT-AAAAAA-TGAG---AGGGACT-CATAA-ATTAA-ATCGGGCCA-ATATCAGGGAT-GCAGTGT-TGTAT-C-T--AGAGGGG-ACAATA-AATTCTACCTTCACCAACCTCA--GCTTCAACAATATTAA----------TTCTGTT-GTTGT---CC--TTTTAGGATCTTTGACAC-----------CCCCCCCAA
gi|9 : AATATATGTACAATG-T-ATATATTGATAGCAACTT--A-TAATGA-AC------------TTA-ATATGA-A---AACA--ATATATATTTTTAAAAATA-TA-ATCATATT-AT-GCACACTTATAATCATT--GTGTT--TAAAAGTAT-TAAAAA-AAATGAAAGGGGCT-CATAACACAAA-TCAGGGcctcagcttcaacaatattaatt
gi|17 : GTAAGATACA-AACA--A-TTTT-TTTTAAA---CATTTCATCATATT-A-TGCACAAACATAATCATTGTATATTAATAGAAGCATAAAAAAA-AAATG--AGGGACT-CAac
gi|5 : ATCAGGGAT-GCAGTGC-TGGAT-C-T--AGAGGGGGACAATA-AATTCTACCTTTACCAACCTCA--GCTTCAACATTATTAAAAA-TGAATATTCTTTT-GTTG----TCATTTTAG-GATCTTCGACACCTCCCCCCCTTCCCATCCCATA--AGAGTGTT--ATTAGTCGTATTCTCC---TTTCTAC-TTTTTTATTTCGGCCTAAAAATAGGTTTTGGTTTT-GGAAA-CAAATCAGTTCTTGAACTGCAGGGTCTTGCTTTCTAATAGCTAAAATTATTTGAAG
gi|14 : TCACCAACCTCA--GCTTCAACATTATTAAAAG-TGGATATTCTAAT-GTTG----TCATTTTCG-GA---TCGAC-------------CCCCCCCCCCCGTGTAGTTTTCCGT--------T--C-----------TACATTTTATT---GC--AAaaaaataaaaccatttataacctttaattgcatataggcctgttatgcacatacacaaatgtcattaaaatcgatctaaatgaagacaaatgaatactaaattcttaaatctacttgtaggttaaaataatcttgcattcttttaaatcttgcagtcattgaatatgtgtgtttgtgttatggcatgtaaaacacgatatctcagaccaaaaaccctgcaagaacctgatatgttt
gi|5 : TAAATGAAGACAAATGAATA--CTA-------AATT------CTTA-AA-TCT--------AC-TTGTAG----GTTA--------------AAA-TAATCTTGCATTCTTTT---AAATCTTGC-AGTCAT-TGAATATGTGTGTTTGTGTTATGGC---ATGTAAAACACGATA----------TCTC-----AGACCAAAAACCCTGCAA----
gi|4 : atcagggatgcagtgctggatctagagggggacaataaattctacctttaccaacctcagcttcaacattattaaaaatgaatattcttttgttgtcattttaggatcttcgacacctcccccccttcccatcccataagagtgttattagtcgtattctcctttctacttttttatttcggcctaaaaataggttttggttttggaaacaaatcagttcttgaactgcagggtcttgctttctaatagctaaaattatttgaagaaaaataaaaccatttataacctttaattgcatataggcctgttatgcacatacacaaatgtcattaaaatcgatcTATACACGT-ACATAATTGTTGCCCCCCCCCCTTGTTT--------TTCAACGCAAACACACATTTTT-TGGAATCTCGGTCATATTCAAACTTACAGCAGAAA--CT-GCCACGC-AAAGCA--ACTTTA-TGAAGGTGAAT-GGTGGGGAAATCATTGTTTCATTATTTTACTTTTCATTGGGTTGAAGGGTTGCGTGTGTTTGGGGGGGGGGGGGGGTATGGACTATGGTTGCGTGTGTTGGGGAGTGGGG---GTGCA-TAAGACGTG--TATTCTC-GGTTAAAAC---TTTAT-CATGTACTA--TTGACTAA-TTAC-ACACTG---TCACAGTTAAA-TTACATTC-AA-TT--A---------TTGATAAAAC-------TTACCA---TTTGAA--ACGTG----TCGATCTGTTTTTCT--CTCCTGCATTG--GTTGAA-TGG------------GGC-----------CTA-CA-GCAAAGT-AACAATTATTTTTT--CTGT-GAAT-TTT-GTTCT--GAAAATGGGGTATATTCTCACTCC-ACTATCCTTT--CTG--G---GTA-CGTGTGTCACTTATA-ATTT--CCCCATGCGCAGTTTCTTCAC-AA--TT---T--TAAAGCGA-ATTCA-----AAGCAATCTCATT-AAAAAATCTGCATCT-AAACA-CCTCACCA-TGTGCACCATCGGTTGTTTTGA---CGGAGGTCA-GGCGGAAAATTC-TCCCG-CGAT-TCTG-ATTGG-CTGTG-C-GAAGATG-GTAACTCCAC-CTCCCCTGACGACgaacctgatatgttt
gi|15 : taggttatcgtatatgtcactgtagatagatcttatacacatg---AAATACACATTTTT-TGGAATCCCCGTAATCTCAAAACTTAAAGCA-GAAACTT-GCCCCG-CAAAG-CG-ACTTCA-TGAAGGTGAATGG-TGGGGAAATC---------TAgtg
gi|16 : aaccATTTTTG-GGAATCCCCGTCATCTCAAAACTCACAGCAGAAA--CTGGCCCCG-CAAAGC
gi|6 : gatcttatacatataagtacccctcccccctccttttttGAGGGGGGTA---GCTATAAGAC-TGTCTAATCTCGGGTAAGAAC----TTATGCATGTACTAATTTGACTAACT-ACTACACTAGCCCCACAGTTAAATTTACATTCAA--TGCTACATATTTATTTGATAAAACAAGAGACTTAAGTCGATATGAAATACGTGTGGCTCGATCTCTTATTTT--CTC-----------TTGCA-TGCA---ACTGCAATGGCTTGAATGGGGCCTA-CA-GC-ACGTAAACAATTA-TTTTT--CTGT-G-ACTTTT-GTTCT--GAAAATGGGGTATA-TCTCACTCCTATTACCCTTT--CTG-----AGTACCGTGTGTCACTGTTACATTC--CCCCATGCGCATG-TCTTCAC-AATTTT---CAA----GCGA-ATTCA-----AAGCAATCTCTTTAAAAACATCTGCATCTAAA------CATCAG-TGT--------------TTTGACGTCGGAGGTCATGACGGACAATTC-TCCCG-CGAT-TCTG-A-TGGGCTGTG-C-GAAGATG-GTAACTCCAC-CTCCCCTGACGACgactt
gi|12 : tatgggtgcgtgtgttAAA-TTACATTC-AATTG--A---------TTGATAAAACAA---AGTTACA----TTTGAA--ACGTG----TCGATCTGTTATTGTAACT--------G---TAGCA-TGGGGCCCCGACATGGG-----AC-----CTA-CA-GC-ACGTAAACAATTA-TTTTT--CTGT-G-gtggaa
gi|7 : CGATCTGTTTTTCT--CTCTCTC---GATTTTGAAGTGGGG--CCTTCACTGGCTA--CCAG---CTAGCAAGCACCGTAAACAATTA-TATTTGTCTGTTG-AC-TTTTGTTCTTCGAAA-T-GGGT-TA-TATCGCTTCTACTA-GCCTTTTCTGAAGTT--CACCGTGTTTCACTTTTACATT--ACCCCA-GCGCAG--TTTTCACCAA--TTTTTCAA-AGCCCGATATTCAAAAGGAAGCAATCTCGTT-AAAACATCTGCATCT-AAACACCTCAACCATTGTGT------------TTTGA---CGGAGG-CATGGCGGAAAATTCTTCCCGCCGATCTCTGAATTGG-CTGTGCCAGAAGATGGGTAACTCCCAACTCCCCT-ACGA
gi|20 : GCGGATA-TTCT-CCCG-CCAT-TCTG-ATTGG-CTGTG-CGG-AGAT--Ggtg
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): AGGTTATCGTAAATACGTTACGTAGATAGATTATACACATACATAATGTAACCCCCTCCCCCAGGCCCCTCCCTTTTTTTCAACCAAATACACATTTTTTTGGAATCTC
Unaligned ( gi|18 ): AGGTTATCGTATACGACACGTAGATATATATTGCATACACATAATGTGCCCTCCCCCCCCCCTGTTTTTTTTTTCAACCAAACACACATTTTTTGGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2 2 4444 1 2 22 2 1 4444 1 2 6666666 1 1 33333333 2 1 44444444 22 11 22222 111 1 22 2 2222 22222 1 1 22 1 1 22222222 3333 1 22 33333333 11 222 111 5555555555 11 333333333333 11 1 11111 2222 3 222 1 11 1 1111 11111 111 2 2222 8888888888888888888888888888888888888888888888888888888 222 111 11 44 11111 44444 1 22222 22 22 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 222 2 2 1111111 9999999999999999999999999999 22 2222 1 333333 2222 1 1 1 4444 1 555555 1 22 22 1 22 22 1111 1 22222222 3333333 2 1 555555555 1 2 1111 2222222 555555555555555555555555555555555555 111111 1 333 1 222 333333333 1 22222 11111111 111 1 2 1 222222 33 33 2 3333 1 55555555555555 4444444 2222222222 11 2222 11 777777777 111 55555555555555 1 1 1 11 1 11 222 11 111 1 22 1 11 2222222222 1 1 1 22222 1 1 22222222222 6666666666666 111 11 1 1 1
lowQualScore : 3 0 0 2222 4 4 5 0 77 0 5 2222 5 1 3 5555555 5 4 33333333 7 7 3 1 4 7 22222222 44 44 6 0 33333 1 333 4 22 3 3 6 8888 0 88888 6 3 1 0 7 2 0 1 00 0 7 1 3 7 7 88888888 3333 6 6 6 3 6 1 11 3 5 1 11111111 33 000 66 2 1 111 6 6 7777777777 77 6 99 444444444444 5 00 3 6 6 6 88 8 3 0 2 88888 4444 0 1 0 8 000 3 0 2 33 1 0 1 7 3 6 3 6 6 3 2222 6 99 6 1 6 7 99 6 6 1 88888 8 0 8 1 8 444 8 88 0 1 77 5 5 6 7777 1 88 5 7777777777777777777777777777777777777777777777777777777 444 1 777 33 66 33333 44444 2 66666 22 1 7 7 99 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 88 555 3 3 7 1 6 2222222 7 7777777777777777777777777777 22 7777 3 000000 9999 5 5 4 5 2222 2 5 4 4 777777 5 44 77 5 77 4 77 88 8888 2 5 4 44444444 2222222 0 55 5 999999999 4 5 0 2 7777777 9999 0000000 999999999999999999999999999999999999 2 6 6 444444 0 333 3 3 888 888888888 1 3 3 2 3 3 2 3 5 55555 55 55 4 88888888 6 1 999 7 4 6 3 1 5 1 555555 6 00 88 3 7777 0 3 11111111111111 2222222 5555555555 33 1111 1 11 333333333 1 8 5 88 222 1 88888888888888 8 8 0 0 8 8 8 8 8 0 0 33 3 2 0 3 3 00 777 33 2 2 888 3 0 77 0 33 3333333333 0 0 0 55555 0 0 0 11111111111 1111111111111 777 3 3 1 0 11 8 8 8 8 8 3 0 8 0 0 2
lowQualScore : . . . .... . . . . .. . . .... . . . ....... . . ........ . . . . . . ........ .. .. . . ..... . ... . .. . . . .... . ..... . . . . . . . . .. . . . . . . ........ .... . . . . . . .. . . . ........ .. ... .. . . ... . . .......... .. . .. ............ . .. . . . . .. . . . . ..... .... . . . . ... . . . .. . . . . . . . . . . .... . .. . . . . .. . . . ..... . . . . . ... . .. . . .. . . . .... . .. . ....................................................... ... . ... .. .. ..... ..... . ..... .. . . . .. ..................................................................................................................................................... . .. ... . . . . . ....... . ............................ .. .... . ...... .... . . . . .... . . . . ...... . .. .. . .. . .. .. .... . . . ........ ....... . .. . ......... . . . . ....... .... ....... .................................... . . . ...... . ... . . ... ......... . . . . . . . . . ..... .. .. . ........ . . ... . . . . . . . ...... . .. .. . .... . . .............. ....... .......... .. .... . .. ......... . . . .. ... . .............. . . . . . . . . . . . .. . . . . . .. ... .. . . ... . . .. . .. .......... . . . ..... . . . ........... ............. ... . . . . .. . . . . . . . . . . .
lowQualScore : 0 0 0 5555 0 0 5 0 55 0 5 5555 0 0 7 0000000 0 0 00000000 3 3 3 0 0 3 77777777 33 00 7 7 33333 0 777 0 77 3 7 7 7777 7 33333 7 3 0 7 3 0 7 0 00 7 3 0 3 3 3 77777777 3333 7 7 7 3 7 0 33 2 6 0 66666666 00 000 77 5 0 777 7 7 0000000000 55 7 22 222222222222 7 77 2 7 7 7 88 0 2 0 5 55555 8888 8 5 8 8 444 5 0 5 55 0 8 0 8 5 7 5 7 7 3 8888 7 22 7 0 7 3 22 7 0 0 66666 0 8 0 0 0 000 0 88 4 4 99 7 7 7 2222 0 33 6 8888888888888888888888888888888888888888888888888888888 222 2 555 88 77 00000 77777 0 00000 77 0 3 3 33 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 33 777 3 7 3 0 7 3333333 3 3333333333333333333333333333 00 3333 3 000000 5555 5 5 0 0 5555 5 0 0 0 555555 0 00 55 5 55 0 55 00 5555 5 5 0 00000000 5555555 0 55 5 555555555 0 0 0 5 0000000 6666 2222222 222222222222222222222222222222222222 2 7 7 888888 0 000 7 3 333 555555555 0 0 0 5 0 0 5 0 0 00000 00 00 0 77777777 7 0 777 3 0 7 7 0 0 0 777777 7 77 77 7 3333 0 2 00000000000000 2222222 2222222222 88 2222 0 00 222222222 0 0 0 22 000 0 00000000000000 0 0 6 8 0 0 0 0 0 0 0 88 2 5 0 2 2 22 555 88 5 5 000 2 0 55 0 88 5555555555 0 0 0 00000 2 0 0 55555555555 8888888888888 555 2 2 0 8 44 0 0 0 0 0 2 8 0 0 0 5
consensus : GTGTAATTCANTACTATTTAATAAAAACACAANTATTNAATACAGATAGTGACTTAGTATTTCCAGCCAATTTAATAGAGAGCATTCCTGTGGGGTCACAATG-GAA-------CTGAA-TCC-AACAC--AAAACAAGATACATA-AGTCAATATTGGACAAATA---ATAT-TTAT-CATCAA-TTGATCAATGTATAGTG-TNTTGAAATTATA-AAAATTCTT-GATTCCAAAA-TAATGTNTCTGCN--CTCATCAGTGTTAAAATAACTC--TGCAATTCTTTTGT-CATGTCCTCTCTTCTTTTACATACTT-GGGAACTTGCACAGATACTAAAA-TCTCCAACAAAGTAT--ACATTGTTGCAAGGCTC-CACATTGGTAAAATACCAAA-CAGCCTTGGTATATTTTTTTCTATTGTAGTAGAATATTGTTTT---T----GGTAAAAGGGAATAGCCTTGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GAT-GATTCG------C--AGTATGCCTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTTAAAAT-GCTGC-TGTAC-CAAGTA-TTATC-AAATGA-ATCTGTAAA--AAAA--ACAAGAATATTTTTT-AATATTGTGCAAATGCCAAATC--GTATTGG-ACAAAGCATGCACATTT-NGAAAGATACTAACAATATAT-TTTTTAAAAATAT-CATCATATT-AT-GCACAAACATAACCATT-TGTATT--TAGAAGCAT-AAAAAANG-ATGA--GGGACT-CATAAATNAA-NTCGGGCCA-ATATCAGGGAT-GCAGTGCTGGAT-C---TAGA-GGGG-ACAATAAAATTCCACCTTCACCAACCTC--AGCTTCAACAT-TATT-AAAAATGGATATTC-TTTTGTTGT---TCATTTTAGGATCTTCGACACCCCCCCCC-------------ACG----AG-T-TT-----CCGT----T----CCC-----T-TATA-NTTTTTATT---GC--AAAAATAGGTTTTG--TTTTGGAAAGCAA--C-GTTCCTGAACT-CAG-GTCTTGCT-TCTAATATCTAAAATTA--TGAAG-------------ANAATAAA-----T-AACAT----AG-TANATAT---TCTATTGATGCA-ATACAC-AATGTTAC--AAAT-NAT----ATG---AACATAG-AAT-AATNCT--ATT-TTGAGT-------TAGG--AAAAT---TNTTGCATTCTTTT--AAAATCTTG-CAGTCAT-TGAATATGTGCGTTTGTGTTGTGGCTATGTGCAGG------TAAGACACGATA-TCTC-----AGACC-AAAACCCTGCAA-A-CATG-TATGTAAAACAAATTGNCTGTAAATAGTTTTGATAAAGTGCTNCAGATATGCGCTCCTAAATNGATTGTTNTGNAAATACTTTAGATCATGCCTNTGGCAAAATAATGTATAAAAGTCGATCTGATCGTAATTCAAAACTTACCANACTATGTTGTACATATGATTTCTTTNNGCATACGAGNCCTGATGCATNCACCAATNAGACACTGTATACATGTACAGTAGTACACATCCANNTCTTGTAACAAAATTTAGAGTCATTACACACGACATTTATTTATCNTCACAGGCACCAGAAGTATGTANCAGGGAGTTTTCTATACACGT-ACATAAT-TGTNNCCCCCCCCCCC-----------CGTTT--------TT-----CAAC-CAAATACACA-TTTTT-TGGAATCCCCGTCATCTCAAAACTTACAGCAGAAA--C-T-GCCCCG-CAAAGC-G-ACTTNA-TGAAGGTGAAT-GGTGGGGAAATCATTGTTTCATNANTCTACNTTTCATTNGGNTGNANGGNTGCGTGTGTTTGGGGNGNNGGGNNGGTANGGACTATGG-TGCGTGTGTTGGGGAGGGGGGTA-GTGC-GTAAGACGTG-CTATTCTC-GGTNAGAAC---TTTATGCATGTACTA--TTGACTAA--TAC-ACACTG---TCACAGTTAAA-TTACATTCAAT-G--A---------TTGATAAAACAAAN---TTA-CA-TT----TGAA--ACGTG----TCGATCTGTTTTTCT--CTC---CG---TTGCA-TGGGGCCT--NCANTGGC-T---AC-GG---CTA-CA-GCAACGTAAACAATTA-T-TTT-TCTGT-G-AC-TTT-GTTCT--GAAAATGGGGTATA-TCTCGCTCCTACTA-CCCTTTCTGG---GT--ACCGTGTGTCACTTTTACATTT--CCCCATGCGCA-G-TTCTTCAC-AA--TT---CA--AANGC-GA-ATTCA-AA-----GCAATCTCGTT-AAAACATCTGCATCT-AAACA-CC-CAACCA-TGTGT------------TTTGA---CGGAGGTCATGGCGGAAAATTCTTCCCG-CGAT-TCTG-ATTGG-CTGTG-CGGAAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
Reference ( family-318 ) : GTATAATTCATT-CTATTTA-TAAA----CAAATATTAAATACAG-TAG--ACTTAGTATTTC-AGCCAATTTAATAAA----ATTCCTATGGGGTCACNATGTGAAAAGTTGTCTGAAGTCCNAACAC--AAAACAAGATACATACAGTCANTATTNGACAAATATATACATGTTACACATCAACTTGATCAATGTGTAGTGCTNTTGAAATTATANAAAATTCTTTGATTCCAAAACTAATGTGTCGGCC--CTCATCAGTGTTAAGATAATTC--TGCAATTCTTTTGT-CNTGCCCTCTCTTCTTTTACATGCNT-GGGGACTTGCACGGATACTNAAA-TCTCCAACAAAGTAT--ACATTGTTGCAAGGTTCTCACATTGGTAAAATACCAAA-CAGCCTTGNTATANTTTTTTCTATTGTAGTAGAATATTGTTTT---T----GGTAAAAGGGAATAGCCTTGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GAT-GATTCGGT----C--AGTATGCCTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTTAAAAT-GCTGC-TGTAC-CAAGTA-TTATC-AAATGA-ATCTGTAAA--AAAA--A-AAGAATATTTTTTCAATATTGTGCAAATGCCAANTC--GTATTGG-ACAAAGCATGCACATTT-TANAAGATACNAACAATATAT-TTTTTAAAAATAT-CATCATATT-AT-GCACAAACATAACCATT-TGTATT--TAGAAGCAT-AAAAAANG-ATGA--GGGACT-CATAAATNAA-NCCGGGCCA-ATATCAGGGAT-GCAGTGCTGNAT-C---TAGA-GGGG-ACAATAAAATTCCACCTTCACCAACCTC--AGCTTCAACAT-TATT-AAAAATGGATATTC-TTTTGTTGT---TCATTTTNGGATCTTCGACACCCCCCCCC-------------ACG----AG-T-TT-----CCGT----T----CCC-----T-TATA-NTTTTTATT---GC--AAAAATAGGTTTTGGTTTTTGGAAAGCAAATCCGTTCCTGAACTGCAGGGTCTTGCTTTCTAATANCTAAAATTANTTGAAG-------------GCAATAAA-----TGAANAC----AAATGNATAT---TCTACTGATGCA-ATNCAC-AATNTTAC--AAAT-NNT----ATG---AACATNGTAGT-AATNCT--ATTATTGAGT-------TAAA--AAAATCAATNTTGCATTNTTTT--AAAATCTTGCCAGTCATATGAATATGTGTGTNTGTGTTGTGGCTATGTGCAGGNCACGATAAGACATGATA-TCTCAGA--AGACCAAAAACCCTGCAA-ATCATG-TATGTAAAACAAATTGAC--TAAATAATTTTAATAAAATGCTTTAGATATG----CTTAAATGAATTGTTTTGTAA------TAGATCATGCC-ATGGCAAA--AATATATAAAAGTCGATCTGATCGTAATTTAAA--TTATCAAACTATGTTGT--ATATAATTTCTTTATGCATATGAGGCCTGATGCATCCACCAATTAGACACTGTATACATGTACAGTAGTACACA-CCACATCTTGTAACAAAATTTAG-----TT--ACATGACATTTATTTATCATCACAGGCACCAGAAGTA-GTACCAAGGNNNNNNNTATACACGT-ACATAAT-TGTTGCCCCCCCCCCT-----------TGTTT--------TT-----CAACGCAAACACACA-TTTTT-TGGAATCCCCGTCATCTCAAAACTTACAGCAGAAA--C-T-GCCCCG-CAAAGCNG-ACTTCA-TGAAGGTGAATGGGTGGGGAAATCATTGTTTCATNATTTTACTTTTCATTGGGTTGAAGGGTTGCGTGTGTTTGGGGGGGGGGGGGGGTATGGACTATGGTTGCGTGTGTTGGGGAGNGGGGTA-GTGCNATAAGACGTGTCTANTCTCGGGTNAGAAC---TTTATGCATGTACTAATTTGACTAACTTACTACACTGGCCCCACAGTTAAA-TTACATTCAAT-G--A---------TTGATAAAACAAA----TTA-CG-TT----TGAA--ACGTG----TCGATCTGTTNTTCT--CTCCC-CG---TTGNA-TGGGGCCT--NCANTGGC-T---AC-GG---CTA-CA-GCAACGTAAACAATTA-T-TTT-TCTGT-G-AC-TTT-GTTCT--GAAAATGGGGTATA-TCTCGCTCCTACTA-CCCTTTCTGG---GT--ACCGTGTGTCACTTTTACATTC--CCCCATGCGCA-G--TCTTCAC-AA--TT---CA--AAGGC-GA-ATTCA-AA-----GCAATCTCGTT-AAAACATCTGCATCT-AAACA-CC-CAACCG-TGTGC------------TTTGA---CGGAGGTCATGGCGGANAATTCTTCCCG-CGAT-TCTG-ATTGG-CTGTG-CGGAAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
gi|1 : GTGTAATTCAGTATTATTTAATAAAAACACAATTATTTAA-ACAGATAGTGACTTAGTATTTCCAGCCAATTTAA-AGAGAGCATTC-TGTGGGGTCACAATG-GAA-------CTGAA-TCGTAACACTCAAGACAAGATACATA-AGTCAATATAGGACAAAGA---ATAT-TTAT-CATCAAATTGATCAAT-TGCAGTAGTGTTGAAATTATAAAAAATTCT--GATTCCAAAA-TAATGTCTCTGCATGCTCATCAGTGTTAAAATAACTCAGTGCAATTCTTTTGTTCATGTCC-CTCTTCTTTTACATACTTTGGGAACTTGCACAAATACAAAAAATCTCCAACAAAGTATCAACAT-GTTGCAAGGC---CA-ATTGGTAAAATATCAAATCAGCCTTGGTAT-TTTTTTTCTATTGTAGTAGAATGTTGTTTT---T----GGTAAAAAGGAGTAGC--TGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GAT-GATTCAGT----CTGAGTATGCCTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTAAAAATCGCTGC-TGTAC-CAAGTA-TTATCGAAATGA-ATCTGTAAACAAAGA--ACAAGAATATTTTTTTAATAT-ATGCAAATACCAAATC--ATAATGG-ACAAAGCATGCACATTA-TGTAAGA-ACAAACAATTTTT-TTTTTAA---TATGCATCATATT-ATTGCACAAACATAACCATT-TGTATT--TAGAGGCAT-AAAAAAAA-ATTA--GGGACT-CATAAATGAA-TTTGGGTCATATATCAGGGAT-GCAGT-CTGGAT-C---AAGA-GGGACACAATACAGTTTCCCCTTCACCAACCTC--ATCTTCAATAT-CATT-AAAAATGGATCTTC-TTTTGTTGT---TCATTTCTAGATCTTCGACAACCCACCCA-------------ATGGTATAG-T-TTT----CCAT----TATATCCCGGATTTATATA-CATTTCATT---GC--AAAAATAGGCTTTG---TTTGAACAATAA-----TTTCTGAACT-CAG--TCTTGCT--CTAATATCTAAA-TTA--TGAAGCTTATTGTGTACAATAATAAA-----TGAACAT----AGATAAATAT---TCTATTGTTG-A-GTT------TCTTA---AAAT-CTT-----TGACCAACATTGTAAT-AGTGCT--ACT--------------------GAAAC---TTTTGCATTCTTTTTAAAAATCTTG-CAGTCAT-TGAA-ATGTGCATGTGT-TTGTGGCTCTGTGCAGG-------AA------ATAGTTTCAAAAGAGATC-AAAACCCTGCA-----ATA-TATGT------AATTGTTTGTAAA-AGTTTTGAT-AAGTACTACA-ATATGCGCTCCTAAATTGATT-TTATGAAAATACTTTAGAT-ATGCCTTTGGCAAAATAATGT-TAAAAGTCGATCTGATCATAATTCAAAACTTACCATACTATGTTGTACATATGATTTCTTTTAGCATAC--ATCCTGATGCATACACT-ATAAGACAC---AT---TGTAT-------CACATCCAGCTCTTGT-ACAAAATTTAGAGTCATTACACACGACATTTATTTATTTTCACA-GCATCAGAAGTATGTAATAGGGAGTTTTCTATACG-GTCACATAGC-TAGTACACCCCCCCCC-----------CCTTTAAAAAAACCC-----CAA---AAATACACA-TTTTTATGGAATCCCCGTCATCTCAAAACTTACAGCAGGAAATC-T-GCCCCGCCAAAGCCGCACTTAACTGAAGGTGAAT--GTCGGGAAATC---------TAAGTCTACGTTTCATTTAGGTGCATAGGTGCGT-TGTTT----TGTTGGGTCGGTAAGG------------------GGGGGGGGGGGTATGTGCAGTAAGACGTG-CTATTCTCCAGTCAGAACACACGTATGCATGTACTA--TTATCTAA--TAC-AAACTG---TCACAGTTAAA-TTACATTC-AT-G--A---------TTGATAAAACAAAT---TTA-CATTT----TGAA--ACGTG----TCGATCTGTTTTTCT--CT----CGT--TTGAA-T-GGGCCT--ACACTGGCTT---AC-AG---CTA-CA-GCAACGTAAACAATTA-T-ATT-TCTGT-G-AC-TTT-GTTCT--GAAAAT-GGGTATA-TCTCGCTCCTACTA-AGCCTTCTGGTCAAT--ACCGTGTGTCACTTTTACATTTTACCCCATGCGCA-GGTTTTTCAC-AA--TT---CAATAATGC-GA-ATTCATAA-----GCAATCTCGTT-AAAACATCTGCATCTAAAACAGCC-CAACCA-TGTG-------------TTTGA---CGGAGGTCATGGCGGAAAATTCTTCCCG-CGAT-TCTG-ATTGGTCGGTG-CGGAAGAT--GTAACT-CCTCACTCCCCTGACGAC
gi|10 : TTTCTATTGTAGTAGA--------------------TAAAGGG--ATGGC-TTGTTGATGGGGTTGATCTGATAACTGGAGTTG---TG-GAT-GATTAAGTATACT--AGTA---CTCTA-TTCTGCT-----------------GT-GTAATTCTTTGAC-----GT-GCTGC-TGTAC-CAAGTA-TTATC-A
gi|10 : ATTGTGCAAATGCCAAATC--ATAttgtgcaaatgccaaatcataaac
gi|11 : tttctattgtagtagataaagggatggcttgttgatggggttgatctgataactggagttgtggatgattaagtatactagtactctattctgctgtgtaattctttgacgtgctgctgtaccaagtattatcTATTGTTAT---T----GGTATAAGGGA-TGGCCT----------GTT-ATCTGGCAACTGGAGTTGTAGAT-GAT-GATTC----------AGTATGC-TCTG-T--TGTTGAAGAATATTCTCTGCTGC-ATAGTTCTTTGACG-AAAAT-GCCGC-TGTAC-TAAaac
gi|12 : AAA-TTACATTCAATTG--A---------TTGATAAAACAAAG---TTA-CA-TT----TGAA--ACGTG----TCGATCTGTTATTGTAACT-----G---TAGCA-TGGGGCCCCGACATGGG------AC------CTA-CA-GC-ACGTAAACAATTA-T-TTT-TCTGT-G-
gi|13 : TATACACAT-ACATAAT--GTAACCCCCTCCCCCAGGCCCCTCCCTTTTT--------TT-----CAAC-CAAATACACATTTTTT-TGGAATCTC
gi|14 : aggttatcgtaaatacgttacgtagatagatTCACCAACCTC--AGCTTCAACAT-TATT-AAAAGTGGATATTC-TAATGTTG----TCATTTTCGGA---TCGAC-CCCCCCCCC-------------CCGTGT-AGTT-TT-----CCGT----T----C---------TACA---TTTTATT---GC--AA
gi|15 : AAC-CAAATACACA-TTTTT-TGGAATCCCCGTAATCTCAAAACTTAAAGCAGAAA--CTT-GCCCCG-CAAAGC-G-ACTTCA-TGAAGGTGAAT-GGTGGGGAAATC
gi|16 : TATACAT-----ATAA---GTACCCCTCCCCCCT-----------CCTTT--------TT-----TA--------------TTTTT-GGGAATCCCCGTCATCTCAAAACTCACAGCAGAAA--C-TGGCCCCG-CAAAGC-G-ACTTta
gi|17 : gatctAAGATACAAACAAT-T-T-TTTTTAAACATTT-CATCATATT-AT-GCACAAACATAATCATTGTATATTAATAGAAGCATAAAAAAAAA-ATGA--GGGACT-CA
gi|18 : gtTGCATAC-ACATAATGTGCCCTCCCCCCCCCC-----------TGTTT--------TTTTTTTCAAC-CAAACACACA-TTTTT-TGGA
gi|19 : aggttatcgtatacgacacgtagatatatatAAAAGGGAA-AGCCT-GTTGATAGGGTTGATCTAATAACTGAAGTTG---AT-GAT-GAT----A----C--AGTATG-CTCTG-T--TGATGAATA------------GT-GTGGTTC
gi|2 : GTATAATTCATT-CTATTTA-TAAA----CAAATATTAAATACAG-TAG--ACTTAGTATTTC-AGCCAATTTAATAAA----ATTCCTATGGGGTCACAATG-GAA-------CTGAATTCC-AACAC--AAA-CAAGAT-CATA-AGTCAATATT-GACAAATATATATAT-TTAC---TCA---TGATCAATGTATAGT--TCTTGAAAT-ATA-AAAATTCTTTGATTCCAAAA-TAATGTATCTGCT---TCATCAGTGTTAAAATAATT----G-AATTCTTTTGT-CTTGTCCTCT--TCTTTTACATGCTT-GGGAATTTGCACAGATATTAAAA-TCTCCA-CAAAGTAT--ACATTGTTGCAAGGTTC--ACATTG-TAAAATAC-AAA-CAGC-TTGGTATATTTTTTTCTATTGTAGTAGAATATTGTTTT---TTGCCGGTAAAAGGGA-TAGC-TTGTTGATAAGGTTGATCTAATAACTG-AGTTG---AT-GATTGATTCG------C--AGTATGC-TCTG-T--TGATGAAGA------------GT-GTGATTCTTTGACTTAAAAT-GCTGCCTGTAC-CAAGTA-TTATC-AAATGACAT-TGTAAG--AAAACAACAAGAATATTTTTT-AATATTGTGCAAATGCCAATTCA-GTATTGG-ACAAAGCATGCACATTTAGAAGAGATA-TAACAATTTAT-CTTTTAAAAAT----------------GCACAAACATCAC--TT-TGTATT--TAGAAGCAT-AAAAAATGCATTA---GGACT-CATAAATTTA-ACTGGGCCA-ATATCAGGGAT-GCAGTGATGGAT-CTATTAGA-GGGG-ACAATAAATTCTCACCTTCACACACCTCAAAGCTTCAACAT-TATTAAAAAAGGGATATTCTTTTTGTTG----TCATTTTAG--TTTTC--CCCCCCCCCCC-------------CCC----AG-T----------G--------------------TATA-GTTTTAATT---GC--AAAAATAGGTTTTG--TTTTG--AAGCAA--TCATT-CTGAACT-CA--GTCTTGC--TCTAATATC--AAATTAA-TGAAA-------------GCA--AAA-----T-AACAT-------TATATAT---TTTACTGATGCA-ATACAC-AATGTTAC--AAAT-AAT----ATG---AACATAA-AAT-AATTCT--ATTATTGAGT-------TAAA--AAAATC--TGTTGCATTG-TTT--AAAATTTTGCCAGTCATATGAATATGTGTGTTTGTGT------TATGTGCAGGT---AATAAGACATGATA-TCTC-----AGAC--AAAACCCTGCAA-ATCATG-TATGTAAAACAAATTGAC--TAAATAATTTTAATAAAATGCTTTAGATATG----CTTAAATGAATTGTTTTGTAA------TAGATCATGCC-ATGGCAAA--AATATATAAAAGTCGATCTGATCGTAATTTAAA--TTATCAAACTATGTTGT--ATATAATTTCTTTATGCATATGAGGCCTGATGCATCCACCAATTAGACACTGTATACATGTACAGTAGTACACA-CCACATCTTGTAACAAAATTTAG-----TT--ACATGACATTTATTTATCATCACAGGCACCAGAAGTA-GTACCAAGG
gi|20 : GCGGATA-TTCT-CCCG-CCAT-TCTG-ATTGG-CTGTG-CGG-AGAT-GGCAACta
gi|21 : aT-GTAGGTTTTTGACTTGC--T-GCTAC-TGTAC-CAAGTA--TATC-CAA-GA-ATCTGT-----GAAA--A-AAGAATATTTTTagcatctttcgtagatagttcaacgtggtaatg
gi|3 : TGGGGTCACTATGTGAAAAGTTGTCTGAAGTCCAAACA-----AA-AAGATAC-TACAGTCATTATTGG-CAAATA----CATGTTATACATCAACTTGATCAATGTAT---GCTATTGAA--TATATAAAATTCTT-GATTCCAAAACTAATGTGTTGGCC--CTCATTAGTGTTAAGATAA-TC--TGCAATTCTTTTGT-CATGCCCTCTTTTCTTTTACATACGT--GGGACTTGCAC-GATACTCAAA-TCTCCAAC-AAGTA---A---TGTTGCAAGG-TCTCACATTGGTAAAATACCAAA-CAGCCTTGCTATA-TTTTTTCTATTGTAGTAGAATA-TGTTTTGCCG----GGTAACAGGG-ATA-CTTTGTTGAC--------TCTAATAATTGGAGATG---ATCGAT--ATTCG------CA-AGTATG-CTCTGTT--TGATGAAGA------------GTGGTGATCTTTTGACTTAAAAT-GCTGC-TGTACACAAGTATTTATC-AAATGA-ATCTGTAGA--AGAG--A-AAG--TATTTTTT-AATATTGTGCAAATGCCAAATCCAGTATTGGAACAAAGCATG-ACAATT-TAGAAGATGCTAACATTATAT-TCTAT-AAAATAT-CATCATATTCATCGCACGAAAAT----ATT-TGTATT--TAGAAGCAT-AGAAAATG-A-GA--GGGACTACATAATTAAAGTTCGGGCCA-ATATCAGGGATCGCAATGCTGTATAC---TAGA-GGGG---AAT-AAATTCTA-CTTC-CCAACCTC--AGCTT--ACATATATT-AAAAATGGATATTC-TTTTGTTATAAATCATTTTAGGA--TTCGA
gi|4 : tattTATACACGT-ACATAAT-TGTTGCCCCCCCCCCT-----------TGTTT--------TT-----CAACGCAAACACACA-TTTTT-TGGAATCTCGGTCATATTCAAACTTACAGCAGAAA--C-T-GCCACG-CAAAGCA--ACTTTA-TGAAGGTGAATGG-TGGGGAAATCATTGTTTCATTATTTTACTTTTCATTGGGTTGAAGGGTTGCGTGTGTTTGGGGGGGGGGGGGGGTATGGACTATGGTTGCGTGTGTTGGGGAGTGGGG---GTGC-ATAAGACGTG--TATTCTC-GGTTAAAAC---TTTAT-CATGTACTA--TTGACTAA-TTAC-ACACTG---TCACAGTTAAA-TTACATTCAAT-T--A---------TTGATAAAAC-------TTACCA-TT----TGAA--ACGTG----TCGATCTGTTTTTCT--CTCC--------TGCA-TTGG---T--TGAATGG---------GGC--CTA-CA-GCAAAGT-AACAATTATT-TTT-TCTGT-GAAT-TTT-GTTCT--GAAAATGGGGTATATTCTCACTCC-ACTA-TCCTTTCTGG---GT--A-CGTGTGTCACTTATA-ATTT--CCCCATGCGCA-GTTTCTTCAC-AA--TT---TT--AAAGC-GA-ATTCA-AA-----GCAATCTCATT-AAAAAATCTGCATCT-AAACA-CC-TCACCA-TGTGCACCATCGGTTGTTTTGA---CGGAGGTCA-GGCGGAAAATTC-TCCCG-CGAT-TCTG-ATTGG-CTGTG-C-GAAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
gi|5 : taggttatcgtatatgtcactgtagatagatcttatacacatgATCAGGGAT-GCAGTGCTGGAT-C---TAGAGGGGG-ACAAT-AAATTCTACCTTTACCAACCTC--AGCTTCAACAT-TATT-AAAAATGAATATTC-TTTTGTTG----TCATTTTAGGATCTTCGACACCTCCCCCCCTTCCCATCCCATAAG----AG-TGTTATTAGTCGTATTCT----CCT-----T-TCTACTTTTTTATTTCGGCCTAAAAATAGGTTTTGG-TTTTGGAAA-CAAATCAGTTCTTGAACTGCAGGGTCTTGCTTTCTAATAGCTAAAATTATTTGAAGA------------AAAATAAAACCATTTATAACCTTTAATTGCATATAGGCCTGTT-ATGCACATACACAAATGTCATTAAAATCGATCTAAATG---AAGACA--AATGAATACTAAATTCTTAAATCTACTTGTAGGTTAAAAT-AATCTTGCATTCTTTT---AAATCTTG-CAGTCAT-TGAATATGTGTGTTTGTGTTATGGC-ATG------------TAAAACACGATA-TCTC-----AGACCAAAAACCCTGCAAGAACCTGATATGTgtg
gi|6 : TATGGGTGCGTGTGTTG---AGGGGGGTA-G--CTATAAGAC-TGTCTAATCTCGGGTAAGAAC---TT-ATGCATGTACTAATTTGACTAAC-TACTACACTAGCCCCACAGTTAAATTTACATTCAAT-GCTACATATTTATTTGATAAAACAAGAGACTTA-AG-TCGATATGAAATACGTGTGGCTCGATCTCTTATTTT--CTC--------TTGCA-TGCAA-CT--GCAATGGC-TTGAAT-GGGGCCTA-CA-GC-ACGTAAACAATTA-T-TTT-TCTGT-G-ACTTTT-GTTCT--GAAAATGGGGTATA-TCTCACTCCTATTA-CCCTTTCTGA---GT--ACCGTGTGTCACTGTTACATTC--CCCCATGCGCATG--TCTTCAC-AATTTT---CA--A--GC-GA-ATTCA-AA-----GCAATCTCTTTAAAAACATCTGCATCT-AAACA--T-CA------GTGT------------TTTGACGTCGGAGGTCATGACGGACAATTC-TCCCG-CGAT-TCTG-ATGGG-CTGTG-C-GAAGAT-GGTAACT-CCAC-CTCCCCTGACGACtt
gi|7 : CGATCTGTTTTTCT--CTCTCTCGATTTTGAAGTGGGGCCT--TCACTGGC-T---ACCAG---CTAGCAAGCACCGTAAACAATTA-TATTTGTCTGTTG-AC-TTTTGTTCTTCGAAA-TGGGTTATA-TC--GCTTCTACTAGCCTTTTCTGAA--GTTCACCGTGTTTCACTTTTACATTA--CCCCA-GCGCA-G--TTTTCACCAA--TTTTTCA--AAGCCCGATATTCA-AAAGGAAGCAATCTCGTT-AAAACATCTGCATCT-AAACA-CCTCAACCATTGTGT------------TTTGA---CGGAGG-CATGGCGGAAAATTCTTCCCGCCGATCTCTGAATTGG-CTGTGCCAGAAGATGGGTAACTCCCAA-CTCCCCT-ACGAgtggaa
gi|8 : GAATATTTTTT-AATATTGTGCAAATGCCAA---------------------TGCACATTT-AGAAAGATGCTAACACTATAT-CTTATAAAAATAT-CATCATAGT-AT-GCTCAAACATATC--TT-TGTATT--TAGAAGCAT-AAAAAATG-A-GA--GGGACT-CATAAATTAA-ATCGGGCCA-ATATCAGGGAT-GCAGTGTTGTAT-C---TAGA-GGGG-ACAAT-AAATTCTACCTTCACCAACCTC--AGCTTCAACAA-TATT-A---------ATTC-TGTTGTTGT---CC-TTTTAGGATCTTTGACACCCCCCCCA-------------ACgtg
gi|8 : CACCCCCCCCAACCTC--AGCTTCAACAA-TATT-AActcagcttcaacaatattaatt
gi|9 : gaatattttttaatattgtgcaaatgccaatgcacatttagaaagatgctaacactatatcttataaaaatatcatcatagtatgctcaaacatatctttgtatttagaagcataaaaaatgagagggactcataaattaaatcgggccaatatcagggatgcagtgttgtatctagaggggacaataaattctaccttcaccaacctcagcttcaacaatattaattctgttgttgtccttttaggatctttgaAACAATATATATTTTTAAAAATAT-AATCATATT-AT-GCACACTTATAATCATT--GTGTT--TAAAAGTAT-TAAAAAAA-ATGAAAGGGGCT-CATAA--CA---------CA-A-ATCAGGGAtt
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 1 1 2222 1 1 11 1 1 2222 1 1 4444444 22222 11 11 1 11 333 1 11 33 33 111 1 1 1 2222 22222 1 1 1 1 22222222 2222 1 11 33333333 11 222 111 3333333 3333333 333333333333 11 1 11 222222 222 1 1 1111 1111 1 111 2 2222 888888888888888888888888888888888888888888888888888 222 111 11 1 2222222 55555 1 1 33 33 22 2222 111111111111111111111111111111111111111111 222 11111111 333 44444444444444 22 1 0000000000000000000000000 33 222 1 1 1111111 3333 1 1 33333 111 33333 1 333333 11 1 1 1 2222 1 333333 1 11 11 1 11 11 11 1 22222222 3333333 1 1 22222 11 1 1 1111 2222 444444444444444444444444444 111111 111111 1 1 1 1 333333333 1 22222 33333333 222222222 1 11 1 1 222222 11 2 1 222 1 555555555555 1 1111111 2222222 11 1111 44444444 111 55555555555555 2 11 1 11 222 11 111 111 1 3333333 1 1 1 22222 1 1 1111 1 555555555555 111 11 1 1 1
lowQualScore : 1 5 5 4444 1 1 5 5 88 5 5 3333 5 3 3333333 11111 6 88 44 7 7 3 44 666 3 99 44 6 7 66 1 333 3 3 3 1 6666 88888 6 3 7 2 3 7 7 3 7 7 88888888 3333 6 6 6 3 6 44 3 5 1 11111111 33 000 66 2 1 111 6 6 3333333 0000000 6 99 444444444444 5 00 3 6 6 6 88 8 3 0 2 33 777777 0 8 0 6 000 3 0 2 1 1 8 0 1 7 3 6 3 6 6 3 2222 6 99 6 1 6 4444 6 1 1 99 0 8 8 444 8 88 0 1 77 5 5 6 7777 88 5 777777777777777777777777777777777777777777777777777 444 1 777 33 3 4444444 44444 2 3 66 77 22 2222 999999999999999999999999999999999999999999 1 333 6 6 66666666 000 55555555555555 55 3 1 7777777777777777777777777 11 1 6 555 3 3 7 0 6 2222222 6 0000 2 3 3 33333 555 88888 3 000000 1 88 5 5 1 5 3333 1 5 1 1 000000 5 66 88 5 88 1 88 22 88 1 1 5 1 44444444 2222222 5 22 5 66666 88 1 5 5 1 9999 5555 22 666666666666666666666666666 555555 6 6 444444 0 0 0 1 3 6 888888888 1 1 1 1 1 1 1 1 5 33333 22 22 1 88888888 6 111111111 3 33 3 3 1 555555 6 88 6 3 333 0 3 000000000000 0 9999999 8888888 33 7777 1 66666666 8 5 3 5 222 1 88888888888888 8 8 66 0 8 8 8 8 8 0 33 3 2 0 3 3 00 777 33 2 2 555 3 666 6 0 3333333 1 0 0 0 55555 0 0 0 6666 3 0 111111111111 3 777 3 3 1 0 11 8 8 8 8 8 3 0 8 0 0 2
lowQualScore : . . . .... . . . . .. . . .... . . ....... ..... . .. .. . . . .. ... . .. .. . . .. . ... . . . . .... ..... . . . . . . . . . . ........ .... . . . . . .. . . . ........ .. ... .. . . ... . . ....... ....... . .. ............ . .. . . . . .. . . . . .. ...... . . . . ... . . . . . . . . . . . . . . . .... . .. . . . .... . . . .. . . . ... . .. . . .. . . . .... .. . ................................................... ... . ... .. . ....... ..... . . .. .. .. .... .......................................... . ... . . ........ ... .............. .. . . ......................... .. . . ... . . . . . ....... . .... . . . ..... ... ..... . ...... . .. . . . . .... . . . . ...... . .. .. . .. . .. .. .. . . . . ........ ....... . .. . ..... .. . . . . .... .... .. ........................... ...... . . ...... . . . . . . ......... . . . . . . . . . ..... .. .. . ........ . ......... . .. . . . ...... . .. . . ... . . ............ . ....... ....... .. .... . ........ . . . . ... . .............. . . .. . . . . . . . .. . . . . . .. ... .. . . ... . ... . . ....... . . . . ..... . . . .... . . ............ . ... . . . . .. . . . . . . . . . . .
lowQualScore : 0 5 5 0000 0 0 5 5 00 0 5 0000 0 3 3333333 00000 7 33 00 3 3 3 00 777 3 00 00 7 3 77 0 777 3 3 3 0 0000 00000 7 3 3 0 3 3 3 3 3 3 77777777 3333 7 7 7 3 7 77 2 6 0 66666666 00 000 77 5 0 777 7 7 7777777 0000000 7 22 222222222222 7 77 2 7 7 7 88 0 2 0 5 88 222222 8 0 8 0 444 5 0 5 0 2 0 8 4 8 5 7 5 7 7 3 8888 7 22 7 0 7 8888 7 0 0 00 0 0 0 000 0 88 4 4 99 7 7 7 2222 33 6 888888888888888888888888888888888888888888888888888 222 2 555 88 3 7777777 33333 0 3 77 00 77 7777 333333333333333333333333333333333333333333 0 333 7 7 77777777 333 00000000000000 33 3 0 3333333333333333333333333 77 0 7 777 3 3 3 7 7 3333333 7 7777 0 7 3 33333 333 00000 3 000000 0 00 5 5 0 0 0000 0 0 0 0 000000 0 55 55 5 00 0 00 00 00 0 0 5 0 00000000 5555555 5 00 5 55555 00 0 0 5 0 6666 4444 00 000000000000000000000000000 000000 7 7 888888 0 0 0 0 3 7 555555555 0 0 0 0 0 0 0 0 0 55555 00 00 0 33333333 7 777777777 3 33 3 3 0 777777 7 33 7 3 333 0 2 000000000000 0 2222222 5555555 88 0000 4 22222222 0 0 2 0 000 0 00000000000000 0 0 44 8 0 0 0 0 0 0 88 2 5 0 2 2 22 555 88 5 5 000 2 222 5 0 2222222 0 0 0 0 00000 2 0 0 5555 2 0 222222222222 2 555 2 2 0 8 44 0 0 0 0 0 2 8 0 0 0 5
consensus : GTGTAATTCANTACTATTTAATAAAAACACAANTATTNAATACAGATAGTGACTTAGTATTTCCAGCCAATTTAATAGAGAGCATTCCTGTGGGGTCACAATG-GAA-------CTGAA-T-C-CAACAC--AAAACAAGATACATA-AGTCAATATTGGACAAATAC--ATATT-TACCATCAA-TTGATCAATGTATAGT--TNTTGAAATTATA-AAAATTCTT-GATTCCAAAA-TAATGTNTCTGCN--CTCATCAGTGTTAAAATAACTC--TGCAATTCTTTTGT-CATGTCCTCTCTTCTTTTACATACTT-GGGAACTTGCACAGATACTAAAA-TCTCCAACAAAGTAT--ACAT-GTTGCAAGGTCCCACATTGGTAAAATACCAAA-CAGCCTTGGTATATTTTTTTCTATTGTAGTAGAATATTGTTTT---T----GGTAAAAGGGAATAGCCTTGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GAT-GATTCG--C--AGTATGC-----CTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTTAAAAT-GCTGC-TGTAC-CAAGTA-TTATC-AAATGA-ATCTGTAAA--AAAA--ACAAGAATATTTTTT-AATATTGTGCAAATGCCAAATC--GTATTGG-ACAAAGCATGCACATTTNGAA-AGATACTAACAATATAT-TTTTTAAAAATAT-CATCATATT-AT-GCACAAACATAACCATT-TGTATT--TAGAAGCAT-AAAAAANG-ATG--AGGGACT-CATAAATNAA-ATCGGGCCA-ATATCAGGGAT-GCAGTGCTGGAT-C---TAGA-GGGG-ACAATAAAATTCCACCTTCACCAACCTC--AGCTTCAACAT-TATT-AAAAATGGATATTC-TTTTGTTGT---TCATTTTAGGATCTTCGACACCCCCCCCC-------------ACG----AGTT-TT-----CCGT--T-TCCC---T---TATA-NTTTTTATT---GC--AAAAATAGGTTTT-GTTTTGGAAA-CAA--CAATTCCTGAACT-CA--GTCTTGC--TCTAATATCT-AAATT-A--TGAAG-------------ANAATAA--------AT-AACAT---A--TANATAT---TCTATTGATGCA-ATACAC-AATGTTAC--AAAT-NAT----ATG---AACATAG-AAT-AATNCTA---TT-TTGAGT-------TAGG--AAAAT--TNTTGCATTCTTTT--AAAATCTTG-CAGTCAT-TGAATATGTGCGTTTGTGTTGTGGCTATGTGCAGG---TAAGACACGATA-TCTC-----AGACC-AAAACCCTGCA--AA-CATG-TATGTAAAACAAATTGNCTGTAAATAGTTTTGATAAAGTGCTNCAGATATGCGCTCCTAAATNGATTGTTNTGNAAATACTTTAGATCATGCCTNTGGCAAAATAATGTATAAAAGTCGATCTGATCGTAATTCAAAACTTACCANACTATGTTGTACATATGATTTCTTTNNGCATACGAGNCCTGATGCATNCACCAATNAGACACTGTATACATGTACAGTAGTACACATCCANNTCTTGTAACAAAATTTAGAGTCATTACACACGACATTTATTTATCNTCACAGGCACCAGAAGTATGTANCAGGGAGTTTTCTATACACGT-ACATAAT-T-GTACCCCCCCCCCCCCG-----------TTTT-----T----CAAC-C----AAATACACA-TTTTT-TGGAATCCCCGTCATCTCAAAACTTACAGCAGAAA--C-T-GCCCCG-CAAAG-CG-ACTTNA-TGAAGGTGAATGGTGGGGAAATCATTGTTTCATNANTCTACNTTTCATTNGGNTGNANGGNTGCGTGTGTTTGGGGNGNNGGGNNGGTANGGACTATGG-TGCGTGTGTTGGGGAGGGGGGTA-GCGC-GTAAGAC-GTGCTATTCT-CGG-TNAGAAC---TTTATGCATGTACTA--TTGACTAACTAC-ACACTG---TCACAGTTAAATT-ACATTCAAT-G----------ATT-GATAAAACAA---ANTTA---C-A-TTTGAAA--CGTGT----CGATCTGTTTTTCTCTC---CG---TTGCA-TGGGGCCT--NCANTGGC-T---AC-GG---CTA-CA-GCAACGTAAACAATTA-T-TTT-TCTGT-G-ACTTTTGTTCT--GAAAATGGGGTATA-TCTCGCTCCTACTA-CCCTTTCTGG---GT--ACCGTGTGTCACTTTTACATTT--CCCCATGCGCA-G-TTCTTCAC-AATT---CN--AAAGC-GA-ATTCA-AA-----GCAATCTCGTT-AAAACATCTGCATCT-AAACA-CC-CAACCA-TG------------TGTTTTGA---CGGAGGTCATGGCGGAAAATTCTTCCCG-CGAT-TCTG-ATTGG-CTGTG-CGGAAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
Reference ( family-318 ) : GTGTAATTCANTACTATTTAATAAAAACACAANTATTNAATACAGATAGTGACTTAGTATTTCCAGCCAATTTAATAGAGAGCATTCCTGTGGGGTCACAATG-GAA-------CTGAA-T-C-CAACAC--AAAACAAGATACATA-AGTCAATATTGGACAAATA---ATATT-TATCATCAA-TTGATCAATGTATAGT-GTNTTGAAATTATA-AAAATTCTT-GATTCCAAAA-TAATGTNTCTGCN--CTCATCAGTGTTAAAATAACTC--TGCAATTCTTTTGT-CATGTCCTCTCTTCTTTTACATACTT-GGGAACTTGCACAGATACTAAAA-TCTCCAACAAAGTAT--ACATTGTTGCAAGGCTCCACATTGGTAAAATACCAAA-CAGCCTTGGTATATTTTTTTCTATTGTAGTAGAATATTGTTTT---T----GGTAAAAGGGAATAGCCTTGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GAT-GATTCG--C--AGTATGC-----CTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTTAAAAT-GCTGC-TGTAC-CAAGTA-TTATC-AAATGA-ATCTGTAAA--AAAA--ACAAGAATATTTTTT-AATATTGTGCAAATGCCAAATC--GTATTGG-ACAAAGCATGCACATTTNGAA-AGATACTAACAATATAT-TTTTTAAAAATAT-CATCATATT-AT-GCACAAACATAACCATT-TGTATT--TAGAAGCAT-AAAAAANG-ATG--AGGGACT-CATAAATNAA-NTCGGGCCA-ATATCAGGGAT-GCAGTGCTGGAT-C---TAGA-GGGG-ACAATAAAATTCCACCTTCACCAACCTC--AGCTTCAACAT-TATT-AAAAATGGATATTC-TTTTGTTGT---TCATTTTAGGATCTTCGACACCCCCCCCC-------------ACG----AG-T-TT-----CCGT----TCCC---T---TATA-NTTTTTATT---GC--AAAAATAGGTTTT-GTTTTGGAAAGCAA--C-GTTCCTGAACT-CA-GGTCTTGC-TTCTAATATCTAAAATT-A--TGAAG-------------ANAATAA--------AT-AACAT---AG-TANATAT---TCTATTGATGCA-ATACAC-AATGTTAC--AAAT-NAT----ATG---AACATAG-AAT-AATNCTA---TT-TTGAGT-------TAGG--AAAAT--TNTTGCATTCTTTT--AAAATCTTG-CAGTCAT-TGAATATGTGCGTTTGTGTTGTGGCTATGTGCAGG---TAAGACACGATA-TCTC-----AGACC-AAAACCCTGCA--AA-CATG-TATGTAAAACAAATTGNCTGTAAATAGTTTTGATAAAGTGCTNCAGATATGCGCTCCTAAATNGATTGTTNTGNAAATACTTTAGATCATGCCTNTGGCAAAATAATGTATAAAAGTCGATCTGATCGTAATTCAAAACTTACCANACTATGTTGTACATATGATTTCTTTNNGCATACGAGNCCTGATGCATNCACCAATNAGACACTGTATACATGTACAGTAGTACACATCCANNTCTTGTAACAAAATTTAGAGTCATTACACACGACATTTATTTATCNTCACAGGCACCAGAAGTATGTANCAGGGAGTTTTCTATACACGT-ACATAAT-T-GTNNCCCCCCCCCCCCG-----------TTTT-----T----CAAC-C----AAATACACA-TTTTT-TGGAATCCCCGTCATCTCAAAACTTACAGCAGAAA--C-T-GCCCCG-CAAAG-CG-ACTTNA-TGAAGGTGAATGGTGGGGAAATCATTGTTTCATNANTCTACNTTTCATTNGGNTGNANGGNTGCGTGTGTTTGGGGNGNNGGGNNGGTANGGACTATGG-TGCGTGTGTTGGGGAGGGGGGTA-GTGC-GTAAGAC-GTGCTATTCT-CGG-TNAGAAC---TTTATGCATGTACTA--TTGACTAA-TAC-ACACTG---TCACAGTTAAATT-ACATTCAAT-G----------ATT-GATAAAACAA---ANTTA---C-A-TTTGAAA--CGTGT----CGATCTGTTTTTCTCTC---CG---TTGCA-TGGGGCCT--NCANTGGC-T---AC-GG---CTA-CA-GCAACGTAAACAATTA-T-TTT-TCTGT-G-ACTTT-GTTCT--GAAAATGGGGTATA-TCTCGCTCCTACTA-CCCTTTCTGG---GT--ACCGTGTGTCACTTTTACATTT--CCCCATGCGCA-G-TTCTTCAC-AATT---CA--AANGC-GA-ATTCA-AA-----GCAATCTCGTT-AAAACATCTGCATCT-AAACA-CC-CAACCA-TG------------TGTTTTGA---CGGAGGTCATGGCGGAAAATTCTTCCCG-CGAT-TCTG-ATTGG-CTGTG-CGGAAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
gi|1 : GTGTAATTCAGTATTATTTAATAAAAACACAATTATTTAA-ACAGATAGTGACTTAGTATTTCCAGCCAATTTAA-AGAGAGCATTC-TGTGGGGTCACAATG-GAA-------CTGAA-T-CGTAACACTCAAGACAAGATACATA-AGTCAATATAGGACAAAGA---ATATT-TATCATCAAATTGATCAAT-TGCAGTAGTGTTGAAATTATA-AAAAATTCT-GATTCCAAAA-TAATGTCTCTGCATGCTCATCAGTGTTAAAATAACTCAGTGCAATTCTTTTGTTCATGTCC-CTCTTCTTTTACATACTTTGGGAACTTGCACAAATACAAAAAATCTCCAACAAAGTATCAACAT-GTTGCAAGGC--CA-ATTGGTAAAATATCAAATCAGCCTTGGTAT-TTTTTTTCTATTGTAGTAGAATGTTGTTTT---T----GGTAAAAAGGAGTAGC--TGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GAT-GATTCAGTCTGAGTATGC-----CTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTAAAAATCGCTGC-TGTAC-CAAGTA-TTATCGAAATGA-ATCTGTAAACAAAGA--ACAAGAATATTTTTTTAATAT-ATGCAAATACCAAATC--ATAATGG-ACAAAGCATGCACATTATGTA-AGA-ACAAACAATTTTT-TTTTTAA---TATGCATCATATT-ATTGCACAAACATAACCATT-TGTATT--TAGAGGCAT-AAAAAAAA-ATT--AGGGACT-CATAAATGAA-TTTGGGTCATATATCAGGGAT-GCAGT-CTGGAT-C---AAGA-GGGACACAATACAGTTTCCCCTTCACCAACCTC--ATCTTCAATAT-CATT-AAAAATGGATCTTC-TTTTGTTGT---TCATTTCTAGATCTTCGACAACCCACCCA-------------ATGGTATAGTT-TT-----CCATTATATCCCGGATTTATATA-CATTTCATT---GC--AAAAATAGGCTTT-GTTT--GAA--CAA--TAATTTCTGAACT-CA--GTCTTGC--TCTAATATCT-AAATT-A--TGAAGCTTATTGTGTACAATAATAA--------ATGAACAT---AGATAAATAT---TCTATTGTTG-A-GT------TTCTTA---AAAT-C-T----TTGACCAACATTGTAAT-AGTGCTA---CT--------------------GAAAC--TTTTGCATTCTTTTTAAAAATCTTG-CAGTCAT-TGAA-ATGTGCATGTGT-TTGTGGCTCTGTGCAGG----AA------ATAGTTTCAAAAGAGATC-AAAACCCTGCA------ATA-TATGT------AATTGTTTGTAAA-AGTTTTGAT-AAGTACTACA-ATATGCGCTCCTAAATTGATT-TTATGAAAATACTTTAGAT-ATGCCTTTGGCAAAATAATGT-TAAAAGTCGATCTGATCATAATTCAAAACTTACCATACTATGTTGTACATATGATTTCTTTTAGCATAC--ATCCTGATGCATACACT-ATAAGACAC---AT---TGTAT-------CACATCCAGCTCTTGT-ACAAAATTTAGAGTCATTACACACGACATTTATTTATTTTCACA-GCATCAGAAGTATGTAATAGGGAGTTTTCTATACG-GTCACATAGC-TAGTACACCCCCCCCCCC--------------TT-----TAAAAAAAC-CCCAAAAATACACA-TTTTTATGGAATCCCCGTCATCTCAAAACTTACAGCAGGAAATC-T-GCCCCGCCAAAGCCGCACTTAACTGAAGGTGAAT-GTCGGGAAATC---------TAAGTCTACGTTTCATTTAGGTGCATAGGTGCGT-TGTTT----TGTTGGGTCGGTAAGG------------------GGGGGGGGGGGTATGTGCAGTAAGAC-GTGCTATTCTCCAG-TCAGAACACACGTATGCATGTACTA--TTATCTAA-TAC-AAACTG---TCACAGTTAAATT-ACATTC-AT-G----------ATT-GATAAAACAA---ATTTA---C-ATTTTGAAA--CGTGT----CGATCTGTTTTTCTCTC---GT---TTGAA-T-GGGCCT--ACACTGGCTT---AC-AG---CTA-CA-GCAACGTAAACAATTA-T-ATT-TCTGT-G-ACTTT-GTTCT--GAAAAT-GGGTATA-TCTCGCTCCTACTA-AGCCTTCTGGTCAAT--ACCGTGTGTCACTTTTACATTTTACCCCATGCGCAGG-TTTTTCAC-AATT---CAATAATGC-GA-ATTCATAA-----GCAATCTCGTT-AAAACATCTGCATCTAAAACAGCC-CAACCA-TG------------TG-TTTGA---CGGAGGTCATGGCGGAAAATTCTTCCCG-CGAT-TCTG-ATTGGTCGGTG-CGGAAGAT--GTAACT-CCTCACTCCCCTGACGAC
gi|10 : TTTCTATTGTAGTAGA--------------------TAAAGGG--ATGGC-TTGTTGATGGGGTTGATCTGATAACTGGAGTTG---TG-GAT-GATT----A--AGTATACTAGTACTCTA-TTCTGCT-----------------GT-GTAATTCTTTGAC-----GT-GCTGC-TGTAC-CAAGTA-TTATC-A
gi|10 : TT-ATCATTGTGCAAATGCCAAATC--ATAttgtgcaaatgccaaatcataaac
gi|11 : tttctattgtagtagataaagggatggcttgttgatggggttgatctgataactggagttgtggatgattaagtatactagtactctattctgctgtgtaattctttgacgtgctgctgtaccaagtaTATTGTTAT---T----GGTATAAGGGA-TGGCCT----------GTT-ATCTGGCAACTGGAGTTGTAGAT-GAT-GATTC------AGTATGC------TCTG-T--TGTTGAAGAATATTCTCTGCTGC-ATAGTTCTTTGACG-AAAAT-GCCGC-TGTAC-TAAaac
gi|12 : AAATT-ACATTCAATTG----------ATT-GATAAAACAA---AGTTA---C-A-TTTGAAA--CGTGT----CGATCTGTTATTGTAAC---TG---TAGCA-TGGGGCCCCGACATGGG------AC------CTA-CA-GC-ACGTAAACAATTA-T-TTT-TCTGT-G-
gi|13 : TATACACAT-ACATAAT---GTAACCCCCTCCCCCAGGCCCCTCCCTTTTTT-----T----CAAC-C----AAATACACATTTTTT-TGGAATCTC
gi|14 : aggttatcgtaaatacgttacgtagatagatTCACCAACCTC--AGCTTCAACAT-TATT-AAAAGTGGATATTC-TAATGTTG----TCATTTTCGGA---TCGAC-CCCCCCCCC-------------CCGTGT-AGTT-TT-----CCGT----TC---------TACA---TTTTATT---GC--AA
gi|15 : AAC-C----AAATACACA-TTTTT-TGGAATCCCCGTAATCTCAAAACTTAAAGCAGAAA--CTT-GCCCCG-CAAAG-CG-ACTTCA-TGAAGGTGAATGGTGGGGAAATC
gi|16 : TATACAT-----ATAA----GTACCCCTCCCCCCTCC-----------TTTT-----T----TA------------------TTTTT-GGGAATCCCCGTCATCTCAAAACTCACAGCAGAAA--C-TGGCCCCG-CAAAG-CG-ACTTta
gi|17 : gatctA-AGATACAAACAAT-T-T-TTTTTAAACATTT-CATCATATT-AT-GCACAAACATAATCATTGTATATTAATAGAAGCATAAAAAAAAA-ATG--AGGGACT-CA
gi|18 : gtTGCATAC-ACATAATGT-GCCCTCCCCCCCCCCTG-----------TTTTTTTTTT----CAAC-C----AAACACACA-TTTTT-TGGA
gi|19 : aggttatcgtatacgacacgtagatatatatAAAAGGGAA-AGCCT-GTTGATAGGGTTGATCTAATAACTGAAGTTG---AT-GAT-GAT--A--C--AGTATG------CTCTG-T--TGATGAATA------------GT-GTGGTTC
gi|2 : GTATAATTCATT-CTATTTA-TAAA----CAAATATTAAATACAG-TAG--ACTTAGTATTTC-AGCCAATTTAATAAA----ATTCCTATGGGGTCACAATG-GAA-------CTGAA-TTC-CAACAC--AAA-CAAGAT-CATA-AGTCAATATTG-ACAAATATATATATT-TAC--TCA---TGATCAATGTATAGT--TCTTGAAAT-ATA-AAAATTCTTTGATTCCAAAA-TAATGTATCTGCT---TCATCAGTGTTAAAATAATT----G-AATTCTTTTGT-CTTGTCCTCT--TCTTTTACATGCTT-GGGAATTTGCACAGATATTAAAA-TCTCCA-CAAAGTAT--ACATTGTTGCAAGGTTC-ACATTG-TAAAATAC-AAA-CAGC-TTGGTATATTTTTTTCTATTGTAGTAGAATATTGTTTT---TTGCCGGTAAAAGGGA-TAGC-TTGTTGATAAGGTTGATCTAATAACTG-AGTTG---AT-GATTGATTCG--C--AGTATGC------TCTG-T--TGATGAAGA------------GT-GTGATTCTTTGACTTAAAAT-GCTGCCTGTAC-CAAGTA-TTATC-AAATGACAT-TGTAAG--AAAACAACAAGAATATTTTTT-AATATTGTGCAAATGCCAATTCA-GTATTGG-ACAAAGCATGCACATTTAGAAGAGATA-TAACAATTTAT-CTTTTAAAAAT----------------GCACAAACATCAC--TT-TGTATT--TAGAAGCAT-AAAAAATGCATT--A-GGACT-CATAAATTTA-ACTGGGCCA-ATATCAGGGAT-GCAGTGATGGAT-CTATTAGA-GGGG-ACAATAAATTCTCACCTTCACACACCTCAAAGCTTCAACAT-TATTAAAAAAGGGATATTCTTTTTGTTG----TCATTTTAG--TTTTC--CCCCCCCCCCC-------------CCC----AG-T----------G----------------TATA-GTTTTAATT---GC--AAAAATAGGTTTT-GTTTTG--AAGCAAT-C-ATT-CTGAACT-CA--GTCTTGC--TCTAATATC--AAATTAA--TGAAA-------------GCA--AA--------AT-AACAT------TATATAT---TTTACTGATGCA-ATACAC-AATGTTAC--AAAT-AAT----ATG---AACATAA-AAT-AATTCTA---TTATTGAGT-------TAAA--AAAATC-TGTTGCATT-GTTT--AAAATTTTGCCAGTCATATGAATATGTGTGTTTGTGT------TATGTGCAGGTAATAAGACATGATA-TCTC-----AGA-C-AAAACCCTGCA--AATCATG-TATGTAAAACAAATTGAC--TAAATAATTTTAATAAAATGCTTTAGATATG----CTTAAATGAATTGTTTTGTAA------TAGATCATGCC-ATGGCAAA--AATATATAAAAGTCGATCTGATCGTAATTTAAA--TTATCAAACTATGTTGT--ATATAATTTCTTTATGCATATGAGGCCTGATGCATCCACCAATTAGACACTGTATACATGTACAGTAGTACACA-CCACATCTTGTAACAAAATTTAG-----TT--ACATGACATTTATTTATCATCACAGGCACCAGAAGTA-GTACCAAGG
gi|20 : GCGGATA-TTCT-CCCG-CCAT-TCTG-ATTGG-CTGTG-CGG-AGAT-GGCAACta
gi|21 : aT-GTAGGTTTTTGACTTGC--T-GCTAC-TGTAC-CAAGTA--TATC-CAA-GA-ATCTGTGAA--AA------AAGAATATTTTTagcatctttcgtagatagttcaacgtggtaatg
gi|3 : TGGGGTCACTATGTGAAAAGTTGTCTGAAGT-C-CAA-AC--AAAA--AGATAC-TACAGTCATTATTGG-CAAATAC--ATGTTATA-CATCAACTTGATCAATGTAT-GC--TATTGAA--TATATAAAATTCTT-GATTCCAAAACTAATGTGTTGGCC--CTCATTAGTGTTAAGATAA-TC--TGCAATTCTTTTGT-CATGCCCTCTTTTCTTTTACATACGT-GGGA-CTTGCAC-GATACTCAAA-TCTCCAACAA-GTA-----AT-GTTGCAAGGTCTCACATTGGTAAAATACCAAA-CAGCCTTGCTATA-TTTTTTCTATTGTAGTAGAATA-TGTTTTGCCG----GGTAACAGGG-ATA-CTTTGTTGAC--------TCTAATAATTGGAGATG---ATCGAT--ATTCG--CA-AGTATG------CTCTGTT--TGATGAAGA------------GTGGTGATCTTTTGACTTAAAAT-GCTGC-TGTACACAAGTATTTATC-AAATGA-ATCTGTAGA--AGAG--A-AAG--TATTTTTT-AATATTGTGCAAATGCCAAATCCAGTATTGGAACAAAGCATG-ACAATTTAGA-AGATGCTAACATTATAT-TCTAT-AAAATAT-CATCATATTCATCGCACGAAAAT----ATT-TGTATT--TAGAAGCAT-AGAAAATG-A-G--AGGGACTACATAATTAAAGTTCGGGCCA-ATATCAGGGATCGCAATGCTGTATAC---TAGA-GGGG---AAT-AAATTCTA-CTTC-CCAACCTC--AGCTT--ACATATATT-AAAAATGGATATTC-TTTTGTTATAAATCATTTTAGGA--TTCGA
gi|4 : tattTATACACGT-ACATAAT-T-GTTGCCCCCCCCCCTTG-----------TTTT-----T----CAACGC----AAACACACA-TTTTT-TGGAATCTCGGTCATATTCAAACTTACAGCAGAAA--C-T-GCCACG-CAAAG-CA-ACTTTA-TGAAGGTGAATGGTGGGGAAATCATTGTTTCATTATTTTACTTTTCATTGGGTTGAAGGGTTGCGTGTGTTTGGGGGGGGGGGGGGGTATGGACTATGGTTGCGTGTGTTGGGGAGTGGGG---GTGC-ATAAGAC-GTG-TATTCT-CGG-TTAAAAC---TTTAT-CATGTACTA--TTGACTAATTAC-ACACTG---TCACAGTTAAATT-ACATTCAAT-T----------ATT-GATAAAAC-------TTAC--C-A-TTTGAAA--CGTGT----CGATCTGTTTTTCTCTC---C-----TGCA-TTGG---T--TGAATGG---------GGC--CTA-CA-GCAAAGT-AACAATTATT-TTT-TCTGT-GAATTTT-GTTCT--GAAAATGGGGTATATTCTCACTCC-ACTA-TCCTTTCTGG---GT--A-CGTGTGTCACTTATA-ATTT--CCCCATGCGCA-GTTTCTTCAC-AATT---TT--AAAGC-GA-ATTCA-AA-----GCAATCTCATT-AAAAAATCTGCATCT-AAACA-CC-TCACCA-TGTGCACCATCGGTTGTTTTGA---CGGAGGTCA-GGCGGAAAATTC-TCCCG-CGAT-TCTG-ATTGG-CTGTG-C-GAAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
gi|5 : taggttatcgtatatgtcactgtagatagatcttatacacatgATCAGGGAT-GCAGTGCTGGAT-C---TAGAGGGGG-ACAAT-AAATTCTACCTTTACCAACCTC--AGCTTCAACAT-TATT-AAAAATGAATATTC-TTTTGTTG----TCATTTTAGGATCTTCGACACCTCCCCCCCTTCCCATCCCATAAG----AG-TGTTATTAGTCGTATTCTCCT---T---TCTACTTTTTTATTTCGGCCTAAAAATAGGTTTTGGTTTTGGAAA-CAAATCAGTTCTTGAACTGCAGGGTCTTGCTTTCTAATAGCTAAAATT-ATTTGAAGA------------AAAATAAAACCATTTAT-AACCTTTAAT-TGCATATAGGCCTGTT-ATGCACATACACAAATGTCATTAAAATCGATCTAAATG---AAGACA--AATGAATACTAAATTC-TTAAATCTACTTGTAGGTTAAAATAATCTTGCATTCTTTT---AAATCTTG-CAGTCAT-TGAATATGTGTGTTTGTGTTATGGC-AT------G---TAAAACACGATA-TCTC-----AGACCAAAAACCCTGCAAGAA-CCTGATATGTgtg
gi|6 : TATGGGTGCGTGTGTTG---AGGGGGGTA-GC-T-ATAAGACTGT-CTAATCT-CGGGTAAGAAC---TT-ATGCATGTACTAATTTGACTAACTACTACACTAGCCCCACAGTTAAATTTACATTCAAT-GCTACATATTTATTTGATAAAACAAGAGACTTAAGTCGA-TATGAAATACGTGTGGCTCGATCTCTTATTTTCTC--------TTGCA-TGCAAC-T--GCAATGGC-TTGAAT-GGGGCCTA-CA-GCA-CGTAAACAATTA-T-TTT-TCTGT-G-ACTTTTGTTCT--GAAAATGGGGTATA-TCTCACTCCTATTA-CCCTTTCTGA---GT--ACCGTGTGTCACTGTTACATTC--CCCCATGCGCA-T-GTCTTCAC-AATT---TT--CAAGC-GA-ATTCA-AA-----GCAATCTCTTTAAAAACATCTGCATCT-AAACA--T-CA------G------------TGTTTTGACGTCGGAGGTCATGACGGACAATTC-TCCCG-CGAT-TCTG-ATGGG-CTGTG-C-GAAGAT-GGTAACT-CCAC-CTCCCCTGACGACtt
gi|7 : ----CGATCTGTTTTTCTCTCTCTCGATTTTGAAGTGGGGCCT--TCACTGGC-T---ACCAG---CTAGCAAGCACCGTAAACAATTA-TATTTGTCTGTTG-ACTTTTGTTCTTCGAAA-TGGGTTATA-TC--GCTTCTACTAGCCTTTTCTGAA--GTTCACCGTGTTTCACTTTTACATTA--CCCCA-GCGCA-G-TT-TTCACCAATTTTTCA--AAGCCCGATATTCA-AAAGGAAGCAATCTCGTT-AAAACATCTGCATCT-AAACA-CCTCAACCATTG------------TGTTTTGA---CGGAGG-CATGGCGGAAAATTCTTCCCGCCGATCTCTGAATTGG-CTGTGCCAGAAGATGGGTAACTCCCAA-CTCCCCT-ACGAgtggaa
gi|8 : GAATATTTTTT-AATATTGTGCAAATGCCAA---------------------TGCACATTTAGAA-AGATGCTAACACTATAT-CTTATAAAAATAT-CATCATAGT-AT-GCTCAAACATATC--TT-TGTATT--TAGAAGCAT-AAAAAATG-A-G--AGGGACT-CATAAATTAA-ATCGGGCCA-ATATCAGGGAT-GCAGTGTTGTAT-C---TAGA-GGGG-ACAAT-AAATTCTACCTTCACCAACCTC--AGCTTCAACAA-TATT-A---------ATTC-TGTTGTTGT---CC-TTTTAGGATCTTTGACACCCCCCCCA-------------ACgtg
gi|8 : CACCCCCCCCAACCTC--AGCTTCAACAA-TATT-AActcagcttcaacaatattaatt
gi|9 : gaatattttttaatattgtgcaaatgccaatgcacatttagaaagatgctaacactatatcttataaaaatatcatcatagtatgctcaaacatatctttgtatttagaagcataaaaaatgagagggactcataaattaaatcgggccaatatcagggatgcagtgttgtatctagaggggacaataaattctaccttcaccaacctcagcttcaacaatattaattctgttgttgtccttttaggatctttgaAACAATATATATTTTTAAAAATAT-AATCATATT-AT-GCACACTTATAATCA-T-TGTGTT--TAAAAGTAT-TAAAAAAA-ATGAAAGGGGCT-CATAACACAA-ATCAGGtt
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 1 1 2222 1 1 11 1 1 2222 1 1 4444444 22222 11 11 1 11 1 22222222 33 11 111 1 1 1 2222 22222 1 1 1 1 2222222 222 1 1 11 33333333 111111111 111 3333333 333333 333333333333 11 1 11 222222 222 1 1 1111 1111 11 1 111 11 1 22222 66666666666666666666666666666666666666666666666666666 11 11 111 11 1 22 111 1 1 11 11 1 1 11 11111111111111111111111111111111111111111111111 222 1111111111 333 44444444444444 22 1 0000000000000000000000000 33 11 1 1 1111111 3333 1 1 33333 111 33333 1 333333 11 1 1 1 2222 1 333333 1 11 11 1 11 11 11 1 22222222 3333333 1 1 22222 11 1 1 66666666666666666666 222 11 6666666666666 1111 111111 111111 1 1 1 1 333333333 1 22222 33333333 222222222 1 11 1 1 222222 11 1 1 222 1 555555555555 1 1111111 2222222 11 1111 44444444 111 55555555555555 11 1 11 222 11 111 111 1 222222 1 11 1 1 22222 1 1 1111 1 555555555555 111 11 1 1 1
lowQualScore : 1 5 5 4444 1 1 5 5 88 5 5 3333 5 3 3333333 11111 6 88 44 7 7 3 44 2 33333333 44 6 7 88 1 333 3 3 3 1 6666 88888 6 3 7 2 3 7 7 3 7 7 7777777 333 6 6 2 3 6 44 3 5 1 11111111 666666666 66 2 111 6 6 3333333 111111 6 99 444444444444 5 00 3 6 6 6 88 8 3 0 2 33 777777 0 8 0 6 000 3 0 2 1 1 8 0 1 7 3 6 3 6 6 3 2222 6 99 6 1 6 4444 6 0 1 11 0 8 8 444 66 0 9 1 77 5 5 6 00000 88 5 44444444444444444444444444444444444444444444444444444 44 11 777 33 3 22 999 2 3 88 88 7 3 3 88 44444444444444444444444444444444444444444444444 333 6 6 5555555555 000 55555555555555 55 3 1 7777777777777777777777777 11 1 6 88 7 3 3 7 0 6 2222222 6 0000 2 3 3 33333 555 88888 3 000000 1 88 5 5 1 5 3333 1 5 1 1 000000 5 66 88 5 88 1 88 22 88 1 1 5 1 44444444 2222222 5 22 5 66666 88 1 5 5 1 66666666666666666666 777 11 4444444444444 7777 555555 6 6 444444 0 0 0 1 3 6 888888888 1 1 1 1 1 1 1 1 5 33333 22 22 1 88888888 6 666666666 3 33 3 3 1 555555 6 88 2 3 333 0 3 000000000000 0 9999999 8888888 33 7777 1 66666666 8 5 3 5 222 1 88888888888888 8 8 66 0 8 8 8 8 3 33 3 2 0 3 3 00 777 33 2 2 555 3 666 6 0 333333 0 33 0 0 55555 0 0 0 6666 3 0 111111111111 3 777 3 3 1 0 11 8 8 8 8 8 3 0 8 0 0 2
lowQualScore : . . . .... . . . . .. . . .... . . ....... ..... . .. .. . . . .. . ........ .. . . .. . ... . . . . .... ..... . . . . . . . . . . ....... ... . . . . . .. . . . ........ ......... .. . ... . . ....... ...... . .. ............ . .. . . . . .. . . . . .. ...... . . . . ... . . . . . . . . . . . . . . . .... . .. . . . .... . . . .. . . . ... .. . . . .. . . . ..... .. . ..................................................... .. .. ... .. . .. ... . . .. .. . . . .. ............................................... ... . . .......... ... .............. .. . . ......................... .. . . .. . . . . . . ....... . .... . . . ..... ... ..... . ...... . .. . . . . .... . . . . ...... . .. .. . .. . .. .. .. . . . . ........ ....... . .. . ..... .. . . . . .................... ... .. ............. .... ...... . . ...... . . . . . . ......... . . . . . . . . . ..... .. .. . ........ . ......... . .. . . . ...... . .. . . ... . . ............ . ....... ....... .. .... . ........ . . . . ... . .............. . . .. . . . . . . .. . . . . . .. ... .. . . ... . ... . . ...... . .. . . ..... . . . .... . . ............ . ... . . . . .. . . . . . . . . . . .
lowQualScore : 0 5 5 0000 0 0 5 5 00 0 5 0000 0 3 3333333 00000 7 33 00 3 3 3 00 0 33333333 00 7 3 33 0 777 3 3 3 0 0000 00000 7 3 3 0 3 3 3 3 3 3 3333333 000 7 7 0 3 7 77 2 6 0 66666666 555555555 77 5 777 7 7 7777777 777777 7 22 222222222222 7 77 2 7 7 7 88 0 2 0 5 88 222222 8 0 8 0 444 5 0 5 0 2 0 8 4 8 5 7 2 7 7 3 8888 7 22 7 0 7 8888 7 8 0 00 0 0 0 000 88 6 0 4 99 7 7 7 77777 33 6 11111111111111111111111111111111111111111111111111111 22 22 555 88 3 33 000 0 3 33 33 3 3 3 33 33333333333333333333333333333333333333333333333 333 7 7 3333333333 333 00000000000000 33 3 0 3333333333333333333333333 77 0 7 33 3 3 3 3 7 7 3333333 7 7777 0 7 3 33333 333 00000 3 000000 0 00 5 5 0 0 0000 0 0 0 0 000000 0 55 55 5 00 0 00 00 00 0 0 5 0 00000000 5555555 5 00 5 55555 00 0 0 5 0 22222222222222222222 222 00 4444444444444 0000 000000 7 7 888888 0 0 0 0 3 7 555555555 0 0 0 0 0 0 0 0 0 55555 00 00 0 33333333 7 333333333 3 33 3 3 0 777777 7 33 0 3 333 0 2 000000000000 0 2222222 5555555 88 0000 4 22222222 0 0 2 0 000 0 00000000000000 0 0 44 8 0 0 0 0 2 88 2 5 0 2 2 22 555 88 5 5 000 2 222 5 0 888888 0 88 0 0 00000 2 0 0 5555 2 0 222222222222 2 555 2 2 0 8 44 0 0 0 0 0 2 8 0 0 0 5
consensus : GTGTAATTCANTACTATTTAATAAAAACACAANTATTNAATACAGATAGTGACTTAGTATTTCCAGCCAATTTAATAGAGAGCATTCCTGTGGGGTCACAATG-GAA-------CTGAA-T-C-CAACAC--AAAACAAGATACATA-AGTCAATATTGGACAAATACATAT--T-TAC-ATCAA-TTGATCAATGTATAGT--TNTTGAAATTATA-AAAATTCTT-GATTCCAAAA-TAATGTNTCTGCN--CTCATCAGTGTTAAAATAACTC--TGCAATTCTTTTGT-CATGTCCTCTCTTCTTTTACATACTT-GGGAACTTGCACAGATACTAAAA-TCTCCAACAAAGTAT--ACA-TGTTGCAAGGT-TCACATTGGTAAAATACCAAA-CAGCCTTGGTATATTTTTTTCTATTGTAGTAGAATATTGTTTT---T----GGTAAAAGGGAATAGCCTTGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GA-TGATTCG--C--AGTATGC-----CTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTTAAAAT-GCTG-CTGTAC-CAAGTA-TTATC-AAATGA-ATCTGTAAA--AAA--AACAAGAATATTTTTT-AATATTGTGCAAATGCCAAATC--GTATTGG-ACAAAGCATGCACATTTNGAA-AGATACTAACAATATAT-TTTTTAAAAATAT-CATCATATT-AT-GCACAAACATAACCATT-TGTATT--TAGAAGCAT-AAAAAANG-ATG--AGGGACT-CATAAATTAAA--TCGGGCCA-ATATCAGGGAT-GCAGTGCTGGAT-C---TAGAGGGG-ACAATAAAATTCCACCTTCACCAACCTC--AGCTTCAACAT-TATT-AAAAATGGATATTC-TTTTGTTGT---TCATTTTAGGATCTTCGACACCCCCCCCC-------------ACG----AGTTTT-----CCGT---T---TCCC---T---TATACTTTTT-ATT---GC--AAAAATAGGTTTTG-TTTT-GAAACAA--TAATTCCTGAACT-CAG--TCTTGCT--CTAATATCTAAA-TT-AT--GAAG-------------ANAA-TAAA--------T-AACAT---TAA----ATAT---TCTATTGATGCA-ATACACAA-TGTTAC--AAATC-AT----ATG---AACATAG-AAT-AATNCTA---TT-TTGAGT-------TAGG--AAAAT--TNTTGCATTCTTTT--AAAATCTTG-CAGTCAT-TGAATATGTGCGTTTGTGTTGTGGCTATGTGCAGG---TAAGACACGATA-TCTC-----AGACC-AAAACCCTGCA--AA-CATG-TATGTAAAACAAATTGNCTGTAAATAGTTTTGATAAAGTGCTNCAGATATGCGCTCCTAAATNGATTGTTNTGNAAATACTTTAGATCATGCCTNTGGCAAAATAATGTATAAAAGTCGATCTGATCGTAATTCAAAACTTACCANACTATGTTGTACATATGATTTCTTTNNGCATACGAGNCCTGATGCATNCACCAATNAGACACTGTATACATGTACAGTAGTACACATCCANNTCTTGTAACAAAATTTAGAGTCATTACACACGACATTTATTTATCNTCACAGGCACCAGAAGTATGTANCAGGGAGTTTTCTATACACGT-----------------ACATAATT-GTACC--CCCCCCCCCCCG-----------TTTTT----CAAC-C----AAATACACA-TTTTT-TGGAATCCCCGTCATCTCAAAACTTACAGCAGAAA--C-T-GCCCCG-CAAAG-CG-ACTTNA-TGAAGGTGAATGGTGGGGAAATCATTGTTTCATNANTCTACNTTTCATTNGGNTGNANGGNTGCGTGTGTTTGGGGNGNNGGGNNGGTANGGACTATGG-TGCGTGTGTTGGGGAGGGGGGTA-GCGC-GTAAGAC-GTGCTATTCT-CGG-TNAGAAC---TTTATGCATGTACTA--TTGACTAACTAC-ACACTG---TCACAGTTAAATT-ACATTCAAT-G----------ATT-GATAAAACAA---ANTTA---C-A-TTTGAAA--CGTGT----CGATCTGTTTTTCTCTC---CG---TTGCA-TGGGGCCT--NCANTGGC-T---AC-GG---CTA-CA-GCAACGTAAACAATTA-T-TTT-TCTGT-GACTTTTGTTCT--GAAAATGGGGTATA-TCTCGCTCCTACTA-CCCTTTCTGG---GT--ACCGTGTGTCACTTTTACATTT--CCCCATGCGCA-G-TTCTTCAC-AATTTT--A-AA-GC--GA-ATTCA-AA-----GCAATCTCGTT-AAAACATCTGCATCT-AAACA-CC-CAACCA-TG------------TGTTTTGA---CGGAGGTCATGGCGGAAAATTCTTCCCG-CGAT-TCTG-ATTGG-CTGTG-CGGAAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
Reference ( family-318 ) : GTGTAATTCANTACTATTTAATAAAAACACAANTATTNAATACAGATAGTGACTTAGTATTTCCAGCCAATTTAATAGAGAGCATTCCTGTGGGGTCACAATG-GAA-------CTGAA-T-C-CAACAC--AAAACAAGATACATA-AGTCAATATTGGACAAATACATAT--T-TACCATCAA-TTGATCAATGTATAGT--TNTTGAAATTATA-AAAATTCTT-GATTCCAAAA-TAATGTNTCTGCN--CTCATCAGTGTTAAAATAACTC--TGCAATTCTTTTGT-CATGTCCTCTCTTCTTTTACATACTT-GGGAACTTGCACAGATACTAAAA-TCTCCAACAAAGTAT--ACA-TGTTGCAAGGTCCCACATTGGTAAAATACCAAA-CAGCCTTGGTATATTTTTTTCTATTGTAGTAGAATATTGTTTT---T----GGTAAAAGGGAATAGCCTTGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GA-TGATTCG--C--AGTATGC-----CTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTTAAAAT-GCTG-CTGTAC-CAAGTA-TTATC-AAATGA-ATCTGTAAA--AAA--AACAAGAATATTTTTT-AATATTGTGCAAATGCCAAATC--GTATTGG-ACAAAGCATGCACATTTNGAA-AGATACTAACAATATAT-TTTTTAAAAATAT-CATCATATT-AT-GCACAAACATAACCATT-TGTATT--TAGAAGCAT-AAAAAANG-ATG--AGGGACT-CATAAATNAAA--TCGGGCCA-ATATCAGGGAT-GCAGTGCTGGAT-C---TAGAGGGG-ACAATAAAATTCCACCTTCACCAACCTC--AGCTTCAACAT-TATT-AAAAATGGATATTC-TTTTGTTGT---TCATTTTAGGATCTTCGACACCCCCCCCC-------------ACG----AGTTTT-----CCGT---T---TCCC---T---TATANTTTTT-ATT---GC--AAAAATAGGTTTTG-TTTTGGAAACAA--CAATTCCTGAACT-CAG--TCTTGCT--CTAATATCTAAA-TT-AT--GAAG-------------ANAA-TAAA--------T-AACAT--ATAN----ATAT---TCTATTGATGCA-ATACACAA-TGTTAC--AAATN-AT----ATG---AACATAG-AAT-AATNCTA---TT-TTGAGT-------TAGG--AAAAT--TNTTGCATTCTTTT--AAAATCTTG-CAGTCAT-TGAATATGTGCGTTTGTGTTGTGGCTATGTGCAGG---TAAGACACGATA-TCTC-----AGACC-AAAACCCTGCA--AA-CATG-TATGTAAAACAAATTGNCTGTAAATAGTTTTGATAAAGTGCTNCAGATATGCGCTCCTAAATNGATTGTTNTGNAAATACTTTAGATCATGCCTNTGGCAAAATAATGTATAAAAGTCGATCTGATCGTAATTCAAAACTTACCANACTATGTTGTACATATGATTTCTTTNNGCATACGAGNCCTGATGCATNCACCAATNAGACACTGTATACATGTACAGTAGTACACATCCANNTCTTGTAACAAAATTTAGAGTCATTACACACGACATTTATTTATCNTCACAGGCACCAGAAGTATGTANCAGGGAGTTTTCTATACACGT-----------------ACATAATT-GTACC--CCCCCCCCCCCG-----------TTTTT----CAAC-C----AAATACACA-TTTTT-TGGAATCCCCGTCATCTCAAAACTTACAGCAGAAA--C-T-GCCCCG-CAAAG-CG-ACTTNA-TGAAGGTGAATGGTGGGGAAATCATTGTTTCATNANTCTACNTTTCATTNGGNTGNANGGNTGCGTGTGTTTGGGGNGNNGGGNNGGTANGGACTATGG-TGCGTGTGTTGGGGAGGGGGGTA-GCGC-GTAAGAC-GTGCTATTCT-CGG-TNAGAAC---TTTATGCATGTACTA--TTGACTAACTAC-ACACTG---TCACAGTTAAATT-ACATTCAAT-G----------ATT-GATAAAACAA---ANTTA---C-A-TTTGAAA--CGTGT----CGATCTGTTTTTCTCTC---CG---TTGCA-TGGGGCCT--NCANTGGC-T---AC-GG---CTA-CA-GCAACGTAAACAATTA-T-TTT-TCTGT-GACTTTTGTTCT--GAAAATGGGGTATA-TCTCGCTCCTACTA-CCCTTTCTGG---GT--ACCGTGTGTCACTTTTACATTT--CCCCATGCGCA-G-TTCTTCAC-AATTCN--A-AA-GC--GA-ATTCA-AA-----GCAATCTCGTT-AAAACATCTGCATCT-AAACA-CC-CAACCA-TG------------TGTTTTGA---CGGAGGTCATGGCGGAAAATTCTTCCCG-CGAT-TCTG-ATTGG-CTGTG-CGGAAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
gi|1 : GTGTAATTCAGTATTATTTAATAAAAACACAATTATTTAA-ACAGATAGTGACTTAGTATTTCCAGCCAATTTAA-AGAGAGCATTC-TGTGGGGTCACAATG-GAA-------CTGAA-T-CGTAACACTCAAGACAAGATACATA-AGTCAATATAGGACAAAGA-ATAT--T-TATCATCAAATTGATCAAT-TGCAGTAGTGTTGAAATTATA-AAAAATTCT-GATTCCAAAA-TAATGTCTCTGCATGCTCATCAGTGTTAAAATAACTCAGTGCAATTCTTTTGTTCATGTCC-CTCTTCTTTTACATACTTTGGGAACTTGCACAAATACAAAAAATCTCCAACAAAGTATCAACA-TGTTGCAAGG--CCA-ATTGGTAAAATATCAAATCAGCCTTGGTAT-TTTTTTTCTATTGTAGTAGAATGTTGTTTT---T----GGTAAAAAGGAGTAGC--TGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GA-TGATTCAGTCTGAGTATGC-----CTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTAAAAATCGCTG-CTGTAC-CAAGTA-TTATCGAAATGA-ATCTGTAAACAAAG--AACAAGAATATTTTTTTAATAT-ATGCAAATACCAAATC--ATAATGG-ACAAAGCATGCACATTATGTA-AGA-ACAAACAATTTTT-TTTTTAA---TATGCATCATATT-ATTGCACAAACATAACCATT-TGTATT--TAGAGGCAT-AAAAAAAA-ATT--AGGGACT-CATAAATGAAT--TTGGGTCATATATCAGGGAT-GCAGT-CTGGAT-C---AAGAGGGACACAATACAGTTTCCCCTTCACCAACCTC--ATCTTCAATAT-CATT-AAAAATGGATCTTC-TTTTGTTGT---TCATTTCTAGATCTTCGACAACCCACCCA-------------ATGGTATAGTTTT-----CCAT---TATATCCCGGATTTATATACATTTC-ATT---GC--AAAAATAGGCTTTG-TTT---GAACAA--TAATTTCTGAACT-CAG--TCTTGCT--CTAATATCTAAA-TT-AT--GAAGCTTATTGTGTACAATAA-TAAA--------TGAACATAGATAA----ATAT---TCTATTGTTG-A-GT-----T-TCTTA---AAATC--T----TTGACCAACATTGTAAT-AGTGCTA---CT--------------------GAAAC--TTTTGCATTCTTTTTAAAAATCTTG-CAGTCAT-TGAA-ATGTGCATGTGT-TTGTGGCTCTGTGCAGG----AA------ATAGTTTCAAAAGAGATC-AAAACCCTGCA------ATA-TATGT------AATTGTTTGTAAA-AGTTTTGAT-AAGTACTACA-ATATGCGCTCCTAAATTGATT-TTATGAAAATACTTTAGAT-ATGCCTTTGGCAAAATAATGT-TAAAAGTCGATCTGATCATAATTCAAAACTTACCATACTATGTTGTACATATGATTTCTTTTAGCATAC--ATCCTGATGCATACACT-ATAAGACAC---AT---TGTAT-------CACATCCAGCTCTTGT-ACAAAATTTAGAGTCATTACACACGACATTTATTTATTTTCACA-GCATCAGAAGTATGTAATAGGGAGTTTTCTATACG-GTC----------------ACATAGCTAGTACA--CCCCCCCCCCC--------------TTTAAAAAAAC-CCCAAAAATACACA-TTTTTATGGAATCCCCGTCATCTCAAAACTTACAGCAGGAAATC-T-GCCCCGCCAAAGCCGCACTTAACTGAAGGTGAAT-GTCGGGAAATC---------TAAGTCTACGTTTCATTTAGGTGCATAGGTGCGT-TGTTT----TGTTGGGTCGGTAAGG------------------GGGGGGGGGGGTATGTGCAGTAAGAC-GTGCTATTCTCCAG-TCAGAACACACGTATGCATGTACTA--TTATCTAA-TAC-AAACTG---TCACAGTTAAATT-ACATTC-AT-G----------ATT-GATAAAACAA---ATTTA---C-ATTTTGAAA--CGTGT----CGATCTGTTTTTCTCTC---GT---TTGAA-T-GGGCCT--ACACTGGCTT---AC-AG---CTA-CA-GCAACGTAAACAATTA-T-ATT-TCTGT-GAC-TTTGTTCT--GAAAAT-GGGTATA-TCTCGCTCCTACTA-AGCCTTCTGGTCAAT--ACCGTGTGTCACTTTTACATTTTACCCCATGCGCAGG-TTTTTCAC-AATTCA--ATAATGC--GA-ATTCATAA-----GCAATCTCGTT-AAAACATCTGCATCTAAAACAGCC-CAACCA-TG------------TG-TTTGA---CGGAGGTCATGGCGGAAAATTCTTCCCG-CGAT-TCTG-ATTGGTCGGTG-CGGAAGAT--GTAACT-CCTCACTCCCCTGACGAC
gi|10 : TTTCTATTGTAGTAGA--------------------TAAAGGG--ATGGC-TTGTTGATGGGGTTGATCTGATAACTGGAGTTG---TG-GA-TGATT----A--AGTATACTAGTACTCTA-TTCTGCT-----------------GT-GTAATTCTTTGAC-----GT-GCTG-CTGTAC-CAAGTA-TTATC-A
gi|10 : TT-ATCATTGTGCAAATGCCAAATC--ATAttgtgcaaatgccaaatcataaac
gi|11 : tttctattgtagtagataaagggatggcttgttgatggggttgatctgataactggagttgtggatgattaagtatactagtactctattctgctgtgtaattctttgacgtgctgctgtaccaagtaTATTGTTAT---T----GGTATAAGGGA-TGGCCT----------GTT-ATCTGGCAACTGGAGTTGTAGAT-GA-TGATTC------AGTATGC------TCTG-T--TGTTGAAGAATATTCTCTGCTGC-ATAGTTCTTTGACG-AAAAT-GCCG-CTGTAC-TAAaac
gi|12 : AAATT-ACATTCAATTG----------ATT-GATAAAACAA---AGTTA---C-A-TTTGAAA--CGTGT----CGATCTGTTATTGTAAC---TG---TAGCA-TGGGGCCCCGACATGGG------AC------CTA-CA-GC-ACGTAAACAATTA-T-TTT-TCTGT-G
gi|13 : TATACACAT-----------------ACATAAT--GTAAC--CCCCTCCCCCAGGCCCCTCCCTTTTTTT----CAAC-C----AAATACACATTTTTT-TGGAATCTC
gi|14 : aggttatcgtaaatacgttacgtagatagatTCACCAACCTC--AGCTTCAACAT-TATT-AAAAGTGGATATTC-TAATGTTG----TCATTTTCGGA---TCGAC-CCCCCCCCC-------------CCGTGT-AGTTTT-----CCGT---T----------C---TACA--TTTT-ATT---GC--AA
gi|15 : AAC-C----AAATACACA-TTTTT-TGGAATCCCCGTAATCTCAAAACTTAAAGCAGAAA--CTT-GCCCCG-CAAAG-CG-ACTTCA-TGAAGGTGAATGGTGGGGAAATC
gi|16 : TATACAT---------------------ATAA---GTACC--CCTCCCCCCTCC-----------TTTTT----TA------------------TTTTT-GGGAATCCCCGTCATCTCAAAACTCACAGCAGAAA--C-TGGCCCCG-CAAAG-CG-ACTTta
gi|17 : gatctA-AGATACAAACAAT-T-T-TTTTTAAACATTT-CATCATATT-AT-GCACAAACATAATCATTGTATATTAATAGAAGCATAAAAAAAAA-ATG--AGGGACT-CA
gi|18 : gtACACGTAGATATATATTGCATACACATAA-T-GTGCCCTCCCCCCCCCCTGTTTTT------TTTTT----CAAC-C----AAACACACA-TTTTT-TGGA
gi|19 : aggttatcgtatacgAAAAGGGAA-AGCCT-GTTGATAGGGTTGATCTAATAACTGAAGTTG---AT-GA-TGAT--A--C--AGTATG------CTCTG-T--TGATGAATA------------GT-GTGGTTC
gi|2 : GTATAATTCATT-CTATTTA-TAAA----CAAATATTAAATACAG-TAG--ACTTAGTATTTC-AGCCAATTTAATAAA----ATTCCTATGGGGTCACAATG-GAA-------CTGAA-TTC-CAACAC--AAA-CAAGAT-CATA-AGTCAATATTG-ACAAATATATATATT-TAC--TCA---TGATCAATGTATAGT--TCTTGAAAT-ATA-AAAATTCTTTGATTCCAAAA-TAATGTATCTGCT---TCATCAGTGTTAAAATAATT----G-AATTCTTTTGT-CTTGTCCTCT--TCTTTTACATGCTT-GGGAATTTGCACAGATATTAAAA-TCTCC-ACAAAGTAT--ACATTGTTGCAAGGT-TCACATT-GTAAAATA-CAAA-CAG-CTTGGTATATTTTTTTCTATTGTAGTAGAATATTGTTTT---TTGCCGGTAAAAGGG-ATAG-CTTGTTGATAAGGTTGATCTAATAACT-GAGTTG---AT-GATTGATTCG--C--AGTATG------CTCTG-T--TGATGAAGA------------GT-GTGATTCTTTGACTTAAAAT-GCTGCCTGTAC-CAAGTA-TTATC-AAATGACAT-TGTAAG--AAAACAACAAGAATATTTTTT-AATATTGTGCAAATGCCAATTCA-GTATTGG-ACAAAGCATGCACATTTAGAAGAGATA-TAACAATTTAT-CTTTTAAAA---------------AT-GCACAAACATCAC--TT-TGTATT--TAGAAGCAT-AAAAAATGCATT--A-GGACT-CATAAATTTAA--CTGGGCCA-ATATCAGGGAT-GCAGTGATGGAT-CTATTAGAGGGG-ACAATAAATTCTCACCTTCACACACCTCAAAGCTTCAACAT-TATTAAAAAAGGGATATTCTTTTTGTTG----TCATTTTAG--TTTTC--CCCCCCCCCCC-------------CCC----AGT----------G-------------------TATAGTTTTA-ATT---GC--AAAAATAGGTTTTG-TTTT-GAAGCAA--TCATT-CTGAACT-CAG--TCTTGCT--CTAATATC-AAA-TTAAT--GAAA-------------GCA---AAA--------T-AACAT---TAT----ATAT---TTTACTGATGCA-ATACACAA-TGTTAC--AAATA-AT----ATG---AACATAA-AAT-AATTCTA---TTATTGAGT-------TAAA--AAAATC-TGTTGCATT-GTTT--AAAATTTTGCCAGTCATATGAATATGTGTGTTTGTGT------TATGTGCAGGTAATAAGACATGATA-TCTC-----AGA-C-AAAACCCTGCA--AATCATG-TATGTAAAACAAATTGAC--TAAATAATTTTAATAAAATGCTTTAGATATG----CTTAAATGAATTGTTTTGTAA------TAGATCATGCC-ATGGCAAA--AATATATAAAAGTCGATCTGATCGTAATTTAAA--TTATCAAACTATGTTGT--ATATAATTTCTTTATGCATATGAGGCCTGATGCATCCACCAATTAGACACTGTATACATGTACAGTAGTACACA-CCACATCTTGTAACAAAATTTAG-----TT--ACATGACATTTATTTATCATCACAGGCACCAGAAGTA-GTACCAAGG
gi|20 : GCGGATA-TTCT-CCCG-CCAT-TCTG-ATTGG-CTGTG-CGG-AGAT-GGCAACta
gi|21 : aT-GTAGGTTTTTGACTTGC--T-GCTA-CTGTAC-CAAGTA--TATC-CAA-GA-ATCTGTGAA--AA------AAGAATATTTTTagcatctttcgtagatagttcaacgtggtaatg
gi|3 : TGGGGTCACTATGTGAAAAGTTGTCTGAAGT-C-CAA-AC--AAAA--AGATAC-TACAGTCATTATTGG-CAAATACATGT--TATAC-ATCAACTTGATCAATGTAT-GC--TATTGAA--TATATAAAATTCTT-GATTCCAAAACTAATGTGTTGGCC--CTCATTAGTGTTAAGATAA-TC--TGCAATTCTTTTGT-CATGCCCTCTTTTCTTTTACATACGT-GGGA-CTTGCAC-GATACTCAAA-TCTCCAACAA-GTA-----A-TGTTGCAAGGTCTCACATTGGTAAAATACCAAA-CAGCCTTGCTATA-TTTTTTCTATTGTAGTAGAATA-TGTTTTGCCG----GGTAACAGGG-ATA-CTTTGTTGAC--------TCTAATAATTGGAGATG---ATCGA-T-ATTCG--CA-AGTATG------CTCTGTT--TGATGAAGA------------GTGGTGATCTTTTGACTTAAAAT-GCTG-CTGTACACAAGTATTTATC-AAATGA-ATCTGTAGA--AGA--GA-AAG--TATTTTTT-AATATTGTGCAAATGCCAAATCCAGTATTGGAACAAAGCATG-ACAATTTAGA-AGATGCTAACATTATAT-TCTAT-AAAATAT-CATCATATTCATCGCACGAAAAT----ATT-TGTATT--TAGAAGCAT-AGAAAATG-A-G--AGGGACTACAT-AATTAAAGTTCGGGCCA-ATATCAGGGATCGCAATGCTGTATAC---TAGAGGGG---AAT-AAATTCTA-CTTC-CCAACCTC--AGCTT--ACATATATT-AAAAATGGATATTC-TTTTGTTATAAATCATTTTAGGA--TTCGA
gi|4 : tattTATACACGT-----------------ACATAATT-GTTGC--CCCCCCCCCTTG-----------TTTTT----CAACGC----AAACACACA-TTTTT-TGGAATCTCGGTCATATTCAAACTTACAGCAGAAA--C-T-GCCACG-CAAAG-CA-ACTTTA-TGAAGGTGAATGGTGGGGAAATCATTGTTTCATTATTTTACTTTTCATTGGGTTGAAGGGTTGCGTGTGTTTGGGGGGGGGGGGGGGTATGGACTATGGTTGCGTGTGTTGGGGAGTGGGG---GTGC-ATAAGAC-GTG-TATTCT-CGG-TTAAAAC---TTTAT-CATGTACTA--TTGACTAATTAC-ACACTG---TCACAGTTAAATT-ACATTCAAT-T----------ATT-GATAAAAC-------TTAC--C-A-TTTGAAA--CGTGT----CGATCTGTTTTTCTCTC---C-----TGCA-TTGG---T--TGAATGG---------GGC--CTA-CA-GCAAAGT-AACAATTATT-TTT-TCTGT-GAATTTTGTTCT--GAAAATGGGGTATATTCTCACTCC-ACTA-TCCTTTCTGG---GT--A-CGTGTGTCACTTATA-ATTT--CCCCATGCGCA-GTTTCTTCAC-AATTTT--A-AA-GC--GA-ATTCA-AA-----GCAATCTCATT-AAAAAATCTGCATCT-AAACA-CC-TCACCA-TGTGCACCATCGGTTGTTTTGA---CGGAGGTCA-GGCGGAAAATTC-TCCCG-CGAT-TCTG-ATTGG-CTGTG-C-GAAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
gi|5 : taggttatcgtatatgtcactgtagatagatcttatacacatgATCAGGGAT-GCAGTGCTGGAT-C---TAGAGGGGGACAATAAA-TTCTACCTTTACCAACCTC--AGCTTCAACAT-TATT-AAAAATGAATATTC-TTTTGTTGT----CATTTTAGGATCTTCGACACCTCCCCCCCTTCCCATCCCATAAG----AGTGTTATTAGTCGTATTC---TCCT---T---TCTACTTTTTTATTTCGGCCTAAAAATAGGTTTTGGTTTTGGAAACAAATCAGTTCTTGAACTGCAGGGTCTTGCTTTCTAATAGCTAAAATT-ATTTGAAG-------------AAAAATAAAACCATTTAT-AACCT--TTAATTGCATATAGGCCTGTT-ATGCACATACACAAATGTCATTAAAATCGATCTAAATG---AAGACA--AATGAATACTAAATTC-TTAAATCTACTTGTAGGTTAAAATAATCTTGCATTCTTTT--AAA-TCTTG-CAGTCAT-TGAATATGTGTGTTTGTGTTATGGC-AT------G---TAAAACACGATA-TCTC-----AGACCAAAAACCCTGCAAGAA-CCTGATATGTgtg
gi|6 : TATGGGTGCGTGTGTTG---AGGGGGGTA-GC-T-ATAAGACTGT-CTAATCT-CGGGTAAGAAC---TT-ATGCATGTACTAATTTGACTAACTACTACACTAGCCCCACAGTTAAATTTACATTCAAT-GCTACATATTTATTTGATAAAACAAGAGACTTAAGTCGA-TATGAAATACGTGTGGCTCGATCTCTTATTTTCTC--------TTGCA-TGCAAC-T--GCAATGGC-TTGAAT-GGGGCCTA-CA-GCA-CGTAAACAATTA-T-TTT-TCTGT-GACTTTTGTTCT--GAAAATGGGGTATA-TCTCACTCCTATTA-CCCTTTCTGA---GT--ACCGTGTGTCACTGTTACATTC--CCCCATGCGCA-T-GTCTTCAC-AATTTT--C-AA-GC--GA-ATTCA-AA-----GCAATCTCTTTAAAAACATCTGCATCT-AAACA--T-CA------G------------TGTTTTGACGTCGGAGGTCATGACGGACAATTC-TCCCG-CGAT-TCTG-ATGGG-CTGTG-C-GAAGAT-GGTAACT-CCAC-CTCCCCTGACGACtt
gi|7 : ----CGATCTGTTTTTCTCTCTCTCGATTTTGAAGTGGGGCCT--TCACTGGC-T---ACCAG---CTAGCAAGCACCGTAAACAATTA-TATTTGTCTGTTGACTTTTGTTCTTCGAAA-TGGGTTATA-TC--GCTTCTACTAGCCTTTTCTGAA--GTTCACCGTGTTTCACTTTTACATTA--CCCCA-GCGCA-G-TT-TTCACCAATTTTTCA-AA-GCCCGATATTCA-AAAGGAAGCAATCTCGTT-AAAACATCTGCATCT-AAACA-CCTCAACCATTG------------TGTTTTGA---CGGAGG-CATGGCGGAAAATTCTTCCCGCCGATCTCTGAATTGG-CTGTGCCAGAAGATGGGTAACTCCCAA-CTCCCCT-ACGAgtggaa
gi|8 : GAATATTTTTT-AATATTGTGCAAATGCCAA---------------------TGCACATTTAGAA-AGATGCTAACACTATAT-CTTATAAAAATAT-CATCATAGT-AT-GCTCAAACATATC--TT-TGTATT--TAGAAGCAT-AAAAAATG-A-G--AGGGACT-CATAAATTAAA--TCGGGCCA-ATATCAGGGAT-GCAGTGTTGTAT-C---TAGAGGGG-ACAAT-AAATTCTACCTTCACCAACCTC--AGCTTCAACAA-TATT-A---------ATTC-TGTTGTTGT---CC-TTTTAGGATCTTTGACACCCCCCCCA-------------ACgtg
gi|8 : CACCCCCCCCAACCTC--AGCTTCAACAA-TATT-AActcagcttcaacaatattaatt
gi|9 : gaatattttttaatattgtgcaaatgccaatgcacatttagaaagatgctaacactatatcttataaaaatatcatcatagtatgctcaaacatatctttgtatttagaagcataaaaaatgagagggactcataaattaaatcgggccaatatcagggatgcagtgttgtatctagaggggacaataaattctaccttcaccaacctcagcttcaacaatattaattctgttgttgtccttttaggatctttgaAACAATATATATTTTTAAAAATAT-AATCATATT-AT-GCACACTTATAATCA-T-TGTGTT--TAAAAGTAT-TAAAAAAA-ATGAAAGGGGCT-CATAACACAAA--TCAGGtt
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 1 1 2222 1 1 11 1 1 2222 1 1 4444444 22222 11 11 1 11 1 2222 1 33 11 111 1 1 1 2222 22222 1 1 1 1 2222222 22 1 1 11 33333333 111111111 111 3333333 333333 333333333333 11 1 11 222222 222 1 1 1111 1111 11 1 111 11 1 22222 66666666666666666666666666666666666666666666666666666 11 111 11 1 111 11 1 1 11 11 1 1 11 111111111111111111111111111111111111111111111 222 1111111111 333 4444444444444 22 1 0000000000000000000000000 33 11 1 1 1111111 3333 1 1 33333 111 33333 1 333333 11 1 1 1 2222 1 333333 1 11 11 1 11 11 11 1 22222222 3333333 1 1 22222 11 1 1 1111 222 555555555555555555555555 111111 111111 1 1 1 1 333333333 1 22222 3333333333 222222222 1 11 1 1 222222 11 1 1 222 1 555555555555 1 1111111 2222222 11 1111 44444444 111 55555555555555 11 1 11 222 11 111 1 11 1 11111 11 1 1 22222 1 1 1111 1 5555555555555 111 11 1 1
lowQualScore : 1 5 5 4444 1 1 5 5 88 5 5 3333 5 3 3333333 11111 6 88 44 7 7 3 44 2 2222 3 7 44 6 7 88 1 333 3 3 3 1 6666 88888 6 3 7 2 3 7 7 3 7 7 7777777 00 6 6 2 3 6 44 3 5 1 11111111 666666666 66 2 111 6 6 3333333 111111 6 99 444444444444 5 00 3 6 6 6 88 8 3 0 2 33 777777 0 8 0 6 000 3 0 2 1 1 8 0 1 7 3 6 3 6 6 3 2222 6 99 6 1 6 4444 6 0 11 0 8 8 444 66 0 9 1 77 5 5 6 00000 88 5 44444444444444444444444444444444444444444444444444444 3 4 11 777 33 3 999 88 2 3 88 88 7 3 3 88 777777777777777777777777777777777777777777777 7 333 6 6 5555555555 000 4444444444444 55 3 1 7777777777777777777777777 11 1 6 88 7 3 3 7 0 6 2222222 6 0000 2 3 3 33333 555 88888 3 000000 1 88 5 5 1 5 3333 1 5 1 1 000000 5 66 88 5 88 1 88 22 88 1 1 5 1 44444444 2222222 5 22 5 66666 88 1 5 5 1 9999 777 555555555555555555555555 555555 6 6 444444 0 0 0 1 3 6 888888888 1 1 1 1 1 1 1 1 5 33333 22 22 1 7777777777 6 666666666 3 33 3 3 1 555555 6 88 2 3 333 0 3 000000000000 0 9999999 8888888 33 7777 1 66666666 8 5 3 5 222 1 00000000000000 8 8 8 66 0 8 8 8 8 3 33 3 2 0 3 3 00 777 33 2 2 555 3 0 66 0 88888 33 0 0 55555 0 0 0 6666 3 0 4444444444444 777 3 3 1 0 11 8 8 8 8 8 444 8 0 0 2
lowQualScore : . . . .... . . . . .. . . .... . . ....... ..... . .. .. . . . .. . .... . . .. . . .. . ... . . . . .... ..... . . . . . . . . . . ....... .. . . . . . .. . . . ........ ......... .. . ... . . ....... ...... . .. ............ . .. . . . . .. . . . . .. ...... . . . . ... . . . . . . . . . . . . . . . .... . .. . . . .... . . .. . . . ... .. . . . .. . . . ..... .. . ..................................................... . . .. ... .. . ... .. . . .. .. . . . .. ............................................. . ... . . .......... ... ............. .. . . ......................... .. . . .. . . . . . . ....... . .... . . . ..... ... ..... . ...... . .. . . . . .... . . . . ...... . .. .. . .. . .. .. .. . . . . ........ ....... . .. . ..... .. . . . . .... ... ........................ ...... . . ...... . . . . . . ......... . . . . . . . . . ..... .. .. . .......... . ......... . .. . . . ...... . .. . . ... . . ............ . ....... ....... .. .... . ........ . . . . ... . .............. . . . .. . . . . . . .. . . . . . .. ... .. . . ... . . .. . ..... .. . . ..... . . . .... . . ............. ... . . . . .. . . . . . ... . . . .
lowQualScore : 0 5 5 0000 0 0 5 5 00 0 5 0000 0 3 3333333 00000 7 33 00 3 3 3 00 0 7777 3 3 00 7 3 33 0 777 3 3 3 0 0000 00000 7 3 3 0 3 3 3 3 3 3 3333333 77 7 7 0 3 7 77 2 6 0 66666666 555555555 77 5 777 7 7 7777777 777777 7 22 222222222222 7 77 2 7 7 7 88 0 2 0 5 88 222222 8 0 8 0 444 5 0 5 0 2 0 8 4 8 5 7 2 7 7 3 8888 7 22 7 0 7 8888 7 8 00 0 0 0 000 88 6 0 4 99 7 7 7 77777 33 6 11111111111111111111111111111111111111111111111111111 0 0 22 555 88 3 000 33 0 3 33 33 3 3 3 33 333333333333333333333333333333333333333333333 7 333 7 7 3333333333 333 0000000000000 33 3 0 3333333333333333333333333 77 0 7 33 3 3 3 3 7 7 3333333 7 7777 0 7 3 33333 333 00000 3 000000 0 00 5 5 0 0 0000 0 0 0 0 000000 0 55 55 5 00 0 00 00 00 0 0 5 0 00000000 5555555 5 00 5 55555 00 0 0 5 0 6666 222 666666666666666666666666 000000 7 7 888888 0 0 0 0 3 7 555555555 0 0 0 0 0 0 0 0 0 55555 00 00 0 3333333333 7 333333333 3 33 3 3 0 777777 7 33 0 3 333 0 2 000000000000 0 2222222 5555555 88 0000 4 22222222 0 0 2 0 000 0 00000000000000 0 0 0 44 8 0 0 0 0 2 88 2 5 0 2 2 22 555 88 5 5 000 2 0 55 0 55555 88 0 0 00000 2 0 0 5555 2 0 5555555555555 555 2 2 0 8 44 0 0 0 0 0 000 0 0 0 5
consensus : GTGTAATTCANTACTATTTAATAAAAACACAANTATTNAATACAGATAGTGACTTAGTATTTCCAGCCAATTTAATAGAGAGCATTCCTGTGGGGTCACAATG-GAA-------CTGAA-T-C-CAACAC--AAAACAAGATACATA-AGTCAATATTGGACAAATACATAT--T-TA-CATCAA-TTGATCAATGTATAGT--TNTTGAAATTATA-AAAATTCTT-GATTCCAAAA-TAATGTNTCTGCN--CTCATCAGTGTTAAAATAACTC--TGCAATTCTTTTGT-CATGTCCTCTCTTCTTTTACATACTT-GGGAACTTGCACAGATACTAAAA-TCTCCAACAAAGTAT--ACA-TGTTGCAAGGT-TCACATTGGTAAAATACCAAA-CAGCCTTGGTATATTTTTTTCTATTGTAGTAGAATATTGTTTT---T----GGTAAAAGGGAATAGCCTTGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GA-TGATTCG--C--AGTATGC-----CTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTTAAAAT-GCTG-CTGTAC-CAAGTA-TTATC-AAATGA-ATCTGTAAA--AAA--AACAAGAATATTTTTT-AATATTGTGCAAATGCCAAATC--GTATTGG-ACAAAGCATGCACATTTNGAA-AGATACTAACAATATAT-TTTTTAAAAATAT-CATCATATT-AT-GCACAAACATAACCATT-TGTATT--TAGAAGCAT-AAAAAANG-ATG--AGGGACT-CATAAATTAAA--TCGGGCCA-ATATCAGGGAT-GCAGTGCTGGAT-C---TAGAGGGG-ACAATAAAATTCCACCTTCACCAACCTC--AGCTTCAACAT-TATT-AAAAATGGATATTC-TTTTGTTGT---TCATTTTAGGATCTTCGACACCCCCCCCC-------------ACG----AGTTTT-----CCGT---T---TCCC---T---TATACNTTTT-ATT---GC--AAAAATAGGTTTTG-TTTTG-AAACAA--TAATTCCTGAACT-CAG--TCTTGCT--CTAATATCTAAA-TT-AT--GAAG-------------ANAA-TAAA--------T-AAC-----AT---TANATAT---TCTATTGATGCA-ATACACAA-TGTTAC--AAATC-AT----ATG---AACATAG-AAT-AATNCTA---TT-TTGAGT-------TAGG--AAAAT--TNTTGCATTCTTTT--AAAATCTTG-CAGTCAT-TGAATATGTGCGTTTGTGTTGTGGCTATGTGCAGG---TAAGACACGATA-TCTC-----AGACC-AAAACCCTGCA--AA-CATG-TATGTAAAACAAATTGNCTGTAAATAGTTTTGATAAAGTGCTNCAGATATGCGCTCCTAAATNGATTGTTNTGNAAATACTTTAGATCATGCCTNTGGCAAAATAATGTATAAAAGTCGATCTGATCGTAATTCAAAACTTACCANACTATGTTGTACATATGATTTCTTTNNGCATACGAGNCCTGATGCATNCACCAATNAGACACTGTATACATGTACAGTAGTACACATCCANNTCTTGTAACAAAATTTAGAGTCATTACACACGACATTTATTTATCNTCACAGGCACCAGAAGTATGTANCAGGGAGTTTTCTATACACGT-ACATAATT-GTACCCCCCCCCCCCC--G-----------TTTTT-----CAAC-C----AAATACACA-TTTTT-TGGAATCCCCGTCATCTCAAAACTTACAGCAGAAA--C-T-GCCCCG-CAAAG-CG-ACTTNA-TGAAGGTGAATGGTGGGGAAATCATTGTTTCATNANTCTACNTTTCATTNGGNTGNANGGNTGCGTGTGTTTGGGGNGNNGGGNNGGTANGGACTATGG-T-GCGTGTGTTGGGGAGGGGGGTA-GCGC-GTAAGAC-GTGCTATTCT-CGG-TNAGAAC---TTTATGCATGTACTA--TTGACTAACTAC-ACACTG---TCACAGTTAAATT-ACATTCAAT-G----------ATT-GATAAAACAA---ANTTA---C-A-TTTGAAA--CGTGT----CGATCTGTTTTTCTCTC---CG---TTGCA-TGGGGCCT--NCANTGGC-T---AC-GG---C-TA-CA-GCAACGTAAACAATTAT-TTT-T-CTGT-GACTTTTGTTCT--GAAAATGGGGTATAT-CTCGCTCCTACTA-CCCTTTCTGG---GT--ACCGTGTGTCACTTTTACATTT--CCCCATGCGCA-GTT-CTTCAC-AATTT--T--AAAGC--GA-ATTCA-AA-----GCAATCTCGTT-AAAACATCTGCATCT-AAACA-CC-CAACCA-TGTG------------TTTTGA---CGGAGGTCATGGCGGAAAATTCTTCCCG-CGAT-TCTG-ATTGG-CTGTG-CGGAAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
Reference ( family-318 ) : GTGTAATTCANTACTATTTAATAAAAACACAANTATTNAATACAGATAGTGACTTAGTATTTCCAGCCAATTTAATAGAGAGCATTCCTGTGGGGTCACAATG-GAA-------CTGAA-T-C-CAACAC--AAAACAAGATACATA-AGTCAATATTGGACAAATACATAT--T-TA-CATCAA-TTGATCAATGTATAGT--TNTTGAAATTATA-AAAATTCTT-GATTCCAAAA-TAATGTNTCTGCN--CTCATCAGTGTTAAAATAACTC--TGCAATTCTTTTGT-CATGTCCTCTCTTCTTTTACATACTT-GGGAACTTGCACAGATACTAAAA-TCTCCAACAAAGTAT--ACA-TGTTGCAAGGT-TCACATTGGTAAAATACCAAA-CAGCCTTGGTATATTTTTTTCTATTGTAGTAGAATATTGTTTT---T----GGTAAAAGGGAATAGCCTTGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GA-TGATTCG--C--AGTATGC-----CTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTTAAAAT-GCTG-CTGTAC-CAAGTA-TTATC-AAATGA-ATCTGTAAA--AAA--AACAAGAATATTTTTT-AATATTGTGCAAATGCCAAATC--GTATTGG-ACAAAGCATGCACATTTNGAA-AGATACTAACAATATAT-TTTTTAAAAATAT-CATCATATT-AT-GCACAAACATAACCATT-TGTATT--TAGAAGCAT-AAAAAANG-ATG--AGGGACT-CATAAATTAAA--TCGGGCCA-ATATCAGGGAT-GCAGTGCTGGAT-C---TAGAGGGG-ACAATAAAATTCCACCTTCACCAACCTC--AGCTTCAACAT-TATT-AAAAATGGATATTC-TTTTGTTGT---TCATTTTAGGATCTTCGACACCCCCCCCC-------------ACG----AGTTTT-----CCGT---T---TCCC---T---TATACTTTTT-ATT---GC--AAAAATAGGTTTTG-TTTTG-AAACAA--TAATTCCTGAACT-CAG--TCTTGCT--CTAATATCTAAA-TT-AT--GAAG-------------ANAA-TAAA--------T-AAC-----AT---TAAATAT---TCTATTGATGCA-ATACACAA-TGTTAC--AAATC-AT----ATG---AACATAG-AAT-AATNCTA---TT-TTGAGT-------TAGG--AAAAT--TNTTGCATTCTTTT--AAAATCTTG-CAGTCAT-TGAATATGTGCGTTTGTGTTGTGGCTATGTGCAGG---TAAGACACGATA-TCTC-----AGACC-AAAACCCTGCA--AA-CATG-TATGTAAAACAAATTGNCTGTAAATAGTTTTGATAAAGTGCTNCAGATATGCGCTCCTAAATNGATTGTTNTGNAAATACTTTAGATCATGCCTNTGGCAAAATAATGTATAAAAGTCGATCTGATCGTAATTCAAAACTTACCANACTATGTTGTACATATGATTTCTTTNNGCATACGAGNCCTGATGCATNCACCAATNAGACACTGTATACATGTACAGTAGTACACATCCANNTCTTGTAACAAAATTTAGAGTCATTACACACGACATTTATTTATCNTCACAGGCACCAGAAGTATGTANCAGGGAGTTTTCTATACACGT-ACATAATT-GTACCCCCCCCCCCCC--G-----------TTTTT-----CAAC-C----AAATACACA-TTTTT-TGGAATCCCCGTCATCTCAAAACTTACAGCAGAAA--C-T-GCCCCG-CAAAG-CG-ACTTNA-TGAAGGTGAATGGTGGGGAAATCATTGTTTCATNANTCTACNTTTCATTNGGNTGNANGGNTGCGTGTGTTTGGGGNGNNGGGNNGGTANGGACTATGG-T-GCGTGTGTTGGGGAGGGGGGTA-GCGC-GTAAGAC-GTGCTATTCT-CGG-TNAGAAC---TTTATGCATGTACTA--TTGACTAACTAC-ACACTG---TCACAGTTAAATT-ACATTCAAT-G----------ATT-GATAAAACAA---ANTTA---C-A-TTTGAAA--CGTGT----CGATCTGTTTTTCTCTC---CG---TTGCA-TGGGGCCT--NCANTGGC-T---AC-GG---C-TA-CA-GCAACGTAAACAATTAT-TTT-T-CTGT-GACTTTTGTTCT--GAAAATGGGGTATAT-CTCGCTCCTACTA-CCCTTTCTGG---GT--ACCGTGTGTCACTTTTACATTT--CCCCATGCGCA-GTT-CTTCAC-AATTT--T--AAAGC--GA-ATTCA-AA-----GCAATCTCGTT-AAAACATCTGCATCT-AAACA-CC-CAACCA-TGTG------------TTTTGA---CGGAGGTCATGGCGGAAAATTCTTCCCG-CGAT-TCTG-ATTGG-CTGTG-CGGAAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
gi|1 : GTGTAATTCAGTATTATTTAATAAAAACACAATTATTTAA-ACAGATAGTGACTTAGTATTTCCAGCCAATTTAA-AGAGAGCATTC-TGTGGGGTCACAATG-GAA-------CTGAA-T-CGTAACACTCAAGACAAGATACATA-AGTCAATATAGGACAAAGA-ATAT--T-TATCATCAAATTGATCAAT-TGCAGTAGTGTTGAAATTATA-AAAAATTCT-GATTCCAAAA-TAATGTCTCTGCATGCTCATCAGTGTTAAAATAACTCAGTGCAATTCTTTTGTTCATGTCC-CTCTTCTTTTACATACTTTGGGAACTTGCACAAATACAAAAAATCTCCAACAAAGTATCAACA-TGTTGCAAGGC--CA-ATTGGTAAAATATCAAATCAGCCTTGGTAT-TTTTTTTCTATTGTAGTAGAATGTTGTTTT---T----GGTAAAAAGGAGTAGC--TGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GA-TGATTCAGTCTGAGTATGC-----CTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTAAAAATCGCTG-CTGTAC-CAAGTA-TTATCGAAATGA-ATCTGTAAACAAAG--AACAAGAATATTTTTTTAATAT-ATGCAAATACCAAATC--ATAATGG-ACAAAGCATGCACATTATGTA-AGA-ACAAACAATTTTT-TTTTTAA---TATGCATCATATT-ATTGCACAAACATAACCATT-TGTATT--TAGAGGCAT-AAAAAAAA-ATT--AGGGACT-CATAAATGAAT--TTGGGTCATATATCAGGGAT-GCAGT-CTGGAT-C---AAGAGGGACACAATACAGTTTCCCCTTCACCAACCTC--ATCTTCAATAT-CATT-AAAAATGGATCTTC-TTTTGTTGT---TCATTTCTAGATCTTCGACAACCCACCCA-------------ATGGTATAGTTTT-----CCAT---TATATCCCGGATTTATATACATTTC-ATT---GC--AAAAATAGGCTTTG-TTT---GAACAA--TAATTTCTGAACT-CAG--TCTTGCT--CTAATATCTAAA-TT-AT--GAAGCTTATTGTGTACAATAA-TAAA--------TGAAC-----ATAGATAAATAT---TCTATTGTTG-A-GT-----T-TCTTA---AAATC--T----TTGACCAACATTGTAAT-AGTGCTA---CT--------------------GAAAC--TTTTGCATTCTTTTTAAAAATCTTG-CAGTCAT-TGAA-ATGTGCATGTGT-TTGTGGCTCTGTGCAGG----AA------ATAGTTTCAAAAGAGATC-AAAACCCTGCA------ATA-TATGT------AATTGTTTGTAAA-AGTTTTGAT-AAGTACTACA-ATATGCGCTCCTAAATTGATT-TTATGAAAATACTTTAGAT-ATGCCTTTGGCAAAATAATGT-TAAAAGTCGATCTGATCATAATTCAAAACTTACCATACTATGTTGTACATATGATTTCTTTTAGCATAC--ATCCTGATGCATACACT-ATAAGACAC---AT---TGTAT-------CACATCCAGCTCTTGT-ACAAAATTTAGAGTCATTACACACGACATTTATTTATTTTCACA-GCATCAGAAGTATGTAATAGGGAGTTTTCTATACG-GTCACATAGCTAGTACACCCCCCCCCCC----------------TTTAAAA-AAAC-CCCAAAAATACACA-TTTTTATGGAATCCCCGTCATCTCAAAACTTACAGCAGGAAATC-T-GCCCCGCCAAAGCCGCACTTAACTGAAGGTGAAT-GTCGGGAAATC---------TAAGTCTACGTTTCATTTAGGTGCATAGGTGCGT-TGTTT----TGTTGGGTCGGTAAGG-------------------GGGGGGGGGGGTATGTGCAGTAAGAC-GTGCTATTCTCCAG-TCAGAACACACGTATGCATGTACTA--TTATCTAA-TAC-AAACTG---TCACAGTTAAATT-ACATTC-AT-G----------ATT-GATAAAACAA---ATTTA---C-ATTTTGAAA--CGTGT----CGATCTGTTTTTCTCTC---GT---TTGAA-T-GGGCCT--ACACTGGCTT---AC-AG---C-TA-CA-GCAACGTAAACAATTAT-ATT-T-CTGT-GAC-TTTGTTCT--GAAAAT-GGGTATAT-CTCGCTCCTACTA-AGCCTTCTGGTCAAT--ACCGTGTGTCACTTTTACATTTTACCCCATGCGCAGGTT-TTTCAC-AATTCAAT--AATGC--GA-ATTCATAA-----GCAATCTCGTT-AAAACATCTGCATCTAAAACAGCC-CAACCA-TGTG-------------TTTGA---CGGAGGTCATGGCGGAAAATTCTTCCCG-CGAT-TCTG-ATTGGTCGGTG-CGGAAGAT--GTAACT-CCTCACTCCCCTGACGAC
gi|10 : TTTCTATTGTAGTAGA--------------------TAAAGGG--ATGGC-TTGTTGATGGGGTTGATCTGATAACTGGAGTTG---TG-GA-TGATT----A--AGTATACTAGTACTCTA-TTCTGCT-----------------GT-GTAATTCTTTGAC-----GT-GCTG-CTGTAC-CAAGTA-TTATC-A
gi|10 : TT-ATCATTGTGCAAATGCCAAATC--ATAttgtgcaaatgccaaatcataaac
gi|11 : tttctattgtagtagataaagggatggcttgttgatggggttgatctgataactggagttgtggatgattaagtatactagtactctattctgctgtgtaattctttgacgtgctgctgtaccaagtaTATTGTTAT---T----GGTATAAGGGA-TGGCCT----------GTT-ATCTGGCAACTGGAGTTGTAGAT-GA-TGATTC------AGTATGC------TCTG-T--TGTTGAAGAATATTCTCTGCTGC-ATAGTTCTTTGACG-AAAAT-GCCG-CTGTAC-TAAaac
gi|12 : AAATT-ACATTCAATTG----------ATT-GATAAAACAA---AGTTA---C-A-TTTGAAA--CGTGT----CGATCTGTTATTGTAAC---TG---TAGCA-TGGGGCCCCGACATGGG------AC------C-TA-CA-GC-ACGTAAACAATTAT-TTT-T-CTGT-G
gi|13 : TATACACAT-ACATAAT--GTAACCCCCTCCCCCA--GGCCCCTCCCTTTTTTT-----CAAC-C----AAATACACATTTTTT-TGGAATCTC
gi|14 : aggttatcgtaaatacgttacgtagatagatTCACCAACCTC--AGCTTCAACAT-TATT-AAAAGTGGATATTC-TAATGTTG----TCATTTTCGGA---TCGAC-CCCCCCCCC-------------CCGTGT-AGTTTT-----CCGT---T---C------------TACATTTT-ATT---GC--AA
gi|15 : AAC-C----AAATACACA-TTTTT-TGGAATCCCCGTAATCTCAAAACTTAAAGCAGAAA--CTT-GCCCCG-CAAAG-CG-ACTTCA-TGAAGGTGAATGGTGGGGAAATC
gi|16 : TATACAT-----ATAA---GTACCCCTCCCCCCTC--C-----------TTTTT-----TA------------------TTTTT-GGGAATCCCCGTCATCTCAAAACTCACAGCAGAAA--C-TGGCCCCG-CAAAG-CG-ACTTta
gi|17 : gatctA-AGATACAAACAAT-T-T-TTTTTAAACATTT-CATCATATT-AT-GCACAAACATAATCATTGTATATTAATAGAAGCATAAAAAAAAA-ATG--AGGGACT-CA
gi|18 : gtTGCATAC-ACATAAT--GTGCCCTCCCCCCCCCCTG-----------TTTTTTTTTTCAAC-C----AAACACACA-TTTTT-TGGA
gi|19 : aggttatcgtatacgacacgtagatatatatAAAAGGGAA-AGCCT-GTTGATAGGGTTGATCTAATAACTGAAGTTG---AT-GA-TGAT--A--C--AGTATG------CTCTG-T--TGATGAATA------------GT-GTGGTTC
gi|2 : GTATAATTCATT-CTATTTA-TAAA----CAAATATTAAATACAG-TAG--ACTTAGTATTTC-AGCCAATTTAATAAA----ATTCCTATGGGGTCACAATG-GAA-------CTGAA-TTC-CAACAC--AAA-CAAGAT-CATA-AGTCAATATTG-ACAAATATATATATT-TA-C-TCA---TGATCAATGTATAGT--TCTTGAAAT-ATA-AAAATTCTTTGATTCCAAAA-TAATGTATCTGCT---TCATCAGTGTTAAAATAATT----G-AATTCTTTTGT-CTTGTCCTCT--TCTTTTACATGCTT-GGGAATTTGCACAGATATTAAAA-TCTCC-ACAAAGTAT--ACATTGTTGCAAGGT-TCACATT-GTAAAATA-CAAA-CAG-CTTGGTATATTTTTTTCTATTGTAGTAGAATATTGTTTT---TTGCCGGTAAAAGGG-ATAG-CTTGTTGATAAGGTTGATCTAATAACT-GAGTTG---AT-GATTGATTCG--C--AGTATG------CTCTG-T--TGATGAAGA------------GT-GTGATTCTTTGACTTAAAAT-GCTGCCTGTAC-CAAGTA-TTATC-AAATGACAT-TGTAAG--AAAACAACAAGAATATTTTTT-AATATTGTGCAAATGCCAATTCA-GTATTGG-ACAAAGCATGCACATTTAGAAGAGATA-TAACAATTTAT-CTTTTAAAA---------------AT-GCACAAACATCAC--TT-TGTATT--TAGAAGCAT-AAAAAATGCATT--A-GGACT-CATAAATTTAA--CTGGGCCA-ATATCAGGGAT-GCAGTGATGGAT-CTATTAGAGGGG-ACAATAAATTCTCACCTTCACACACCTCAAAGCTTCAACAT-TATTAAAAAAGGGATATTCTTTTTGTTG----TCATTTTAG--TTTTC--CCCCCCCCCCC-------------CCC----AGT----------G-------------------TATAGTTTTA-ATT---GC--AAAAATAGGTTTTG-TTTTG-AAGCAA--TCATT-CTGAACT-CAG--TCTTGCT--CTAATATC-AAA-TTAAT--GAAA-------------GCA---AAA--------T-AAC-----AT---TATATAT---TTTACTGATGCA-ATACACAA-TGTTAC--AAATA-AT----ATG---AACATAA-AAT-AATTCTA---TTATTGAGT-------TAAA--AAAATC-TGTTGCATT-GTTT--AAAATTTTGCCAGTCATATGAATATGTGTGTTTGTGT------TATGTGCAGGTAATAAGACATGATA-TCTC-----AGA-C-AAAACCCTGCA--AATCATG-TATGTAAAACAAATTGAC--TAAATAATTTTAATAAAATGCTTTAGATATG----CTTAAATGAATTGTTTTGTAA------TAGATCATGCC-ATGGCAAA--AATATATAAAAGTCGATCTGATCGTAATTTAAA--TTATCAAACTATGTTGT--ATATAATTTCTTTATGCATATGAGGCCTGATGCATCCACCAATTAGACACTGTATACATGTACAGTAGTACACA-CCACATCTTGTAACAAAATTTAG-----TT--ACATGACATTTATTTATCATCACAGGCACCAGAAGTA-GTACCAAGG
gi|20 : GCGGATA-TTCT-CCCG-CCAT-TCTG-ATTGG-CTGTG-CGG-AGAT-GGCAACta
gi|21 : aT-GTAGGTTTTTGACTTGC--T-GCTA-CTGTAC-CAAGTA--TATC-CAA-GA-ATCTGTGAA--AA------AAGAATATTTTTagcatctttcgtagatagttcaacgtggtaatg
gi|3 : TGGGGTCACTATGTGAAAAGTTGTCTGAAGT-C-CAA-AC--AAAA--AGATAC-TACAGTCATTATTGG-CAAATACATGT--TATA-CATCAACTTGATCAATGTAT-GC--TATTGAA--TATATAAAATTCTT-GATTCCAAAACTAATGTGTTGGCC--CTCATTAGTGTTAAGATAA-TC--TGCAATTCTTTTGT-CATGCCCTCTTTTCTTTTACATACGT-GGGA-CTTGCAC-GATACTCAAA-TCTCCAACAA-GTA-----A-TGTTGCAAGGTCTCACATTGGTAAAATACCAAA-CAGCCTTGCTATA-TTTTTTCTATTGTAGTAGAATA-TGTTTTGCCG----GGTAACAGGG-ATA-CTTTGTTGAC--------TCTAATAATTGGAGATG---ATCGA-T-ATTCG--CA-AGTATG------CTCTGTT--TGATGAAGA------------GTGGTGATCTTTTGACTTAAAAT-GCTG-CTGTACACAAGTATTTATC-AAATGA-ATCTGTAGA--AGA--GA-AAG--TATTTTTT-AATATTGTGCAAATGCCAAATCCAGTATTGGAACAAAGCATG-ACAATTTAGA-AGATGCTAACATTATAT-TCTAT-AAAATAT-CATCATATTCATCGCACGAAAAT----ATT-TGTATT--TAGAAGCAT-AGAAAATG-A-G--AGGGACTACAT-AATTAAAGTTCGGGCCA-ATATCAGGGATCGCAATGCTGTATAC---TAGAGGGG---AAT-AAATTCTA-CTTC-CCAACCTC--AGCTT--ACATATATT-AAAAATGGATATTC-TTTTGTTATAAATCATTTTAGGA--TTCGA
gi|4 : tattTATACACGT-ACATAATT-GTTGCCCCCCCCCCTT--G-----------TTTTT-----CAACGC----AAACACACA-TTTTT-TGGAATCTCGGTCATATTCAAACTTACAGCAGAAA--C-T-GCCACG-CAAAG-CA-ACTTTA-TGAAGGTGAATGGTGGGGAAATCATTGTTTCATTATTTTACTTTTCATTGGGTTGAAGGGTTGCGTGTGTTTGGGGGGGGGGGGGGGTATGGACTATGG-TTGCGTGTGTTGGGGAGTGGGG---GTGC-ATAAGAC-GTG-TATTCT-CGG-TTAAAAC---TTTAT-CATGTACTA--TTGACTAATTAC-ACACTG---TCACAGTTAAATT-ACATTCAAT-T----------ATT-GATAAAAC-------TTA---CCA-TTTGAAA--CGTGT----CGATCTGTTTTTCTCTC---C-----TGCA-TTGG---T--TGAATGG---------GG---CCTA-CA-GCAAAGTAA-CAATTAT-TTT-TTCTGT-GAATTTTGTTCT--GAAAATGGGGTATATTCTCACTCC-ACTA-TCCTTTCTGG---GT--AC-GTGTGTCACTTATA-ATTT--CCCCATGCGCA-GTTTCTTCAC-AATTT--T--AAAGC--GA-ATTCA-AA-----GCAATCTCATT-AAAAAATCTGCATCT-AAACA-CC-TCACCA-TGTGCACCATCGGTTGTTTTGA---CGGAGGTCA-GGCGGAAAATTCT-CCCG-CGAT-TCTG-ATTGG-CTGTG-CG-AAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
gi|5 : taggttatcgtatatgtcactgtagatagatcttatacacatgATCAGGGAT-GCAGTGCTGGAT-C---TAGAGGGGGACAATAAA-TTCTACCTTTACCAACCTC--AGCTTCAACAT-TATT-AAAAATGAATATTC-TTTTGTTGT----CATTTTAGGATCTTCGACACCTCCCCCCCTTCCCATCCCATAAG----AGTGTTATTAGTCGTATTC---TCCT---T---TCTACTTTTTTATTTCGGCCTAAAAATAGGTTTTGGTTTTGGAAACAAATCAGTTCTTGAACTGCAGGGTCTTGCTTTCTAATAGCTAAAATT-ATTTGAAG-------------AAAAATAAAACCATTTAT-AACCTTTAAT---TGCATATAGGCCTGTT-ATGCACATACACAAATGTCATTAAAATCGATCTAAATG---AAGACA--AATGAATACTAAATTC-TTAAATCTACTTGTAGGTTAAAATAATCTTGCATTCTTTT--AAA-TCTTG-CAGTCAT-TGAATATGTGTGTTTGTGTTATGGC-AT------G---TAAAACACGATA-TCTC-----AGACCAAAAACCCTGCAAGAA-CCTGATATGTgtg
gi|6 : TATGGGT-GCGTGTGTTG---AGGGGGGTA-GC-T-ATAAGACTGT-CTAATCT-CGGGTAAGAAC---TT-ATGCATGTACTAATTTGACTAACTACTACACTAGCCCCACAGTTAAATTTACATTCAAT-GCTACATATTTATTTGATAAAACAAGAGACTTAAGTCGA-TATGAAATACGTGTGGCTCGATCTCTTATTTTCTC--------TTGCA-TGCAAC-T--GCAATGGC-TTGAAT-GGGGCC-TA-CA-GCA-CGTAAACAATTAT-TTT-T-CTGT-GACTTTTGTTCT--GAAAATGGGGTATAT-CTCACTCCTATTA-CCCTTTCTGA---GT--ACCGTGTGTCACTGTTACATTC--CCCCATGCGCA-TGT-CTTCAC-AATTT--T--CAAGC--GA-ATTCA-AA-----GCAATCTCTTTAAAAACATCTGCATCT-AAACA--T-CA------GTG------------TTTTGACGTCGGAGGTCATGACGGACAATTC-TCCCG-CGAT-TCTG-ATGGG-CTGTG-C-GAAGAT-GGTAACT-CCAC-CTCCCCTGACGACtt
gi|7 : ----CGATCTGTTTTTCTCTCTCTCGATTTTGAAGTGGGGCCT--TCACTGGC-T---ACCAG---C-TAGCAAGCACCGTAAACAATTATATTTGT-CTGTTGACTTTTGTTCTTCGAAA-TGGGTTATAT-C--GCTTCTACTAGCCTTTTCTGAA--GTTCACCGTGTTTCACTTTTACATTA--CCCCA-GCGCA-GTT--TTCACCAATTT--TTCAAAGCCCGATATTCA-AAAGGAAGCAATCTCGTT-AAAACATCTGCATCT-AAACA-CCTCAACCATTGTG------------TTTTGA---CGGAGG-CATGGCGGAAAATTCTTCCCGCCGATCTCTGAATTGG-CTGTGCCAGAAGATGGGTAACTCCCAA-CTCCCCT-ACGAgtggaa
gi|8 : GAATATTTTTT-AATATTGTGCAAATGCCAA---------------------TGCACATTTAGAA-AGATGCTAACACTATAT-CTTATAAAAATAT-CATCATAGT-AT-GCTCAAACATATC--TT-TGTATT--TAGAAGCAT-AAAAAATG-A-G--AGGGACT-CATAAATTAAA--TCGGGCCA-ATATCAGGGAT-GCAGTGTTGTAT-C---TAGAGGGG-ACAAT-AAATTCTACCTTCACCAACCTC--AGCTTCAACAA-TATT-A---------ATTC-TGTTGTTGT---CC-TTTTAGGATCTTTGACACCCCCCCCA-------------ACgtg
gi|8 : CACCCCCCCCAACCTC--AGCTTCAACAA-TATT-AActcagcttcaacaatattaatt
gi|9 : gaatattttttaatattgtgcaaatgccaatgcacatttagaaagatgctaacactatatcttataaaaatatcatcatagtatgctcaaacatatctttgtatttagaagcataaaaaatgagagggactcataaattaaatcgggccaatatcagggatgcagtgttgtatctagaggggacaataaattctaccttcaccaacctcagcttcaacaatattaattctgttgttgtccttttaggatctttgaAACAATATATATTTTTAAAAATAT-AATCATATT-AT-GCACACTTATAATCA-T-TGTGTT--TAAAAGTAT-TAAAAAAA-ATGAAAGGGGCT-CATAACACAAA--TCAGGtt
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 1 1 2222 1 1 11 1 1 2222 1 1 4444444 22222 11 11 1 11 1 2222 1 33 11 111 1 1 1 2222 22222 1 1 1 1 2222222 22 1 1 11 33333333 111111111 111 3333333 333333 333333333333 11 1 11 222222 222 1 1 1111 1111 11 1 111 11 1 22222 66666666666666666666666666666666666666666666666666666 11 111 11 1 111 11 1 1 11 11 1 1 11 111111111111111111111111111111111111111111111 222 1111111111 333 4444444444444 22 1 0000000000000000000000000 33 11 1 1 1111111 3333 1 1 33333 111 33333 1 333333 11 1 1 1 2222 1 333333 1 11 11 1 11 11 11 1 22222222 3333333 1 1 22222 11 1 1 66666666666666666666 222 11 6666666666666 1111 111111 111111 1 1 1 1 333333333 1 22222 3333333333 222222222 1 11 1 1 222222 11 1 1 222 1 555555555555 1 1111111 2222222 11 1111 44444444 111 55555555555555 11 1 11 222 11 111 1 11 1 11111 11 1 1 22222 1 1 1111 1 5555555555555 111 11 1 1
lowQualScore : 1 5 5 4444 1 1 5 5 88 5 5 3333 5 3 3333333 11111 6 88 44 7 7 3 44 2 2222 3 7 44 6 7 88 1 333 3 3 3 1 6666 88888 6 3 7 2 3 7 7 3 7 7 7777777 00 6 6 2 3 6 44 3 5 1 11111111 666666666 66 2 111 6 6 3333333 111111 6 99 444444444444 5 00 3 6 6 6 88 8 3 0 2 33 777777 0 8 0 6 000 3 0 2 1 1 8 0 1 7 3 6 3 6 6 3 2222 6 99 6 1 6 4444 6 0 11 0 8 8 444 66 0 9 1 77 5 5 6 00000 88 5 44444444444444444444444444444444444444444444444444444 3 1 11 777 33 3 999 88 2 3 88 88 7 3 3 88 777777777777777777777777777777777777777777777 1 333 6 6 5555555555 000 4444444444444 55 3 1 7777777777777777777777777 11 1 6 88 7 3 3 7 0 6 2222222 6 0000 2 3 3 33333 555 88888 3 000000 1 88 5 5 1 5 3333 1 5 1 1 000000 5 66 88 5 88 1 88 22 88 1 1 5 1 44444444 2222222 5 22 5 66666 88 1 5 5 1 66666666666666666666 777 11 4444444444444 7777 555555 6 6 444444 0 0 0 1 3 6 888888888 1 1 1 1 1 1 1 1 5 33333 22 22 1 7777777777 6 666666666 3 33 3 3 1 555555 6 88 2 3 333 0 3 000000000000 0 9999999 8888888 33 7777 1 66666666 8 5 3 5 222 1 00000000000000 8 8 8 66 0 8 8 8 8 3 33 3 2 0 3 3 00 777 33 2 2 555 3 0 66 0 88888 33 0 0 55555 0 0 0 6666 3 0 4444444444444 777 3 3 1 0 11 8 8 8 8 8 444 8 0 0 2
lowQualScore : . . . .... . . . . .. . . .... . . ....... ..... . .. .. . . . .. . .... . . .. . . .. . ... . . . . .... ..... . . . . . . . . . . ....... .. . . . . . .. . . . ........ ......... .. . ... . . ....... ...... . .. ............ . .. . . . . .. . . . . .. ...... . . . . ... . . . . . . . . . . . . . . . .... . .. . . . .... . . .. . . . ... .. . . . .. . . . ..... .. . ..................................................... . . .. ... .. . ... .. . . .. .. . . . .. ............................................. . ... . . .......... ... ............. .. . . ......................... .. . . .. . . . . . . ....... . .... . . . ..... ... ..... . ...... . .. . . . . .... . . . . ...... . .. .. . .. . .. .. .. . . . . ........ ....... . .. . ..... .. . . . . .................... ... .. ............. .... ...... . . ...... . . . . . . ......... . . . . . . . . . ..... .. .. . .......... . ......... . .. . . . ...... . .. . . ... . . ............ . ....... ....... .. .... . ........ . . . . ... . .............. . . . .. . . . . . . .. . . . . . .. ... .. . . ... . . .. . ..... .. . . ..... . . . .... . . ............. ... . . . . .. . . . . . ... . . . .
lowQualScore : 0 5 5 0000 0 0 5 5 00 0 5 0000 0 3 3333333 00000 7 33 00 3 3 3 00 0 7777 3 3 00 7 3 33 0 777 3 3 3 0 0000 00000 7 3 3 0 3 3 3 3 3 3 3333333 77 7 7 0 3 7 77 2 6 0 66666666 555555555 77 5 777 7 7 7777777 777777 7 22 222222222222 7 77 2 7 7 7 88 0 2 0 5 88 222222 8 0 8 0 444 5 0 5 0 2 0 8 4 8 5 7 2 7 7 3 8888 7 22 7 0 7 8888 7 8 00 0 0 0 000 88 6 0 4 99 7 7 7 77777 33 6 11111111111111111111111111111111111111111111111111111 0 0 22 555 88 3 000 33 0 3 33 33 3 3 3 33 333333333333333333333333333333333333333333333 0 333 7 7 3333333333 333 0000000000000 33 3 0 3333333333333333333333333 77 0 7 33 3 3 3 3 7 7 3333333 7 7777 0 7 3 33333 333 00000 3 000000 0 00 5 5 0 0 0000 0 0 0 0 000000 0 55 55 5 00 0 00 00 00 0 0 5 0 00000000 5555555 5 00 5 55555 00 0 0 5 0 22222222222222222222 222 00 4444444444444 0000 000000 7 7 888888 0 0 0 0 3 7 555555555 0 0 0 0 0 0 0 0 0 55555 00 00 0 3333333333 7 333333333 3 33 3 3 0 777777 7 33 0 3 333 0 2 000000000000 0 2222222 5555555 88 0000 4 22222222 0 0 2 0 000 0 00000000000000 0 0 0 44 8 0 0 0 0 2 88 2 5 0 2 2 22 555 88 5 5 000 2 0 55 0 55555 88 0 0 00000 2 0 0 5555 2 0 5555555555555 555 2 2 0 8 44 0 0 0 0 0 000 0 0 0 5
consensus : GTGTAATTCANTACTATTTAATAAAAACACAANTATTNAATACAGATAGTGACTTAGTATTTCCAGCCAATTTAATAGAGAGCATTCCTGTGGGGTCACAATG-GAA-------CTGAA-T-C-CAACAC--AAAACAAGATACATA-AGTCAATATTGGACAAATACATAT--T-TA-CATCAA-TTGATCAATGTATAGT--TNTTGAAATTATA-AAAATTCTT-GATTCCAAAA-TAATGTNTCTGCN--CTCATCAGTGTTAAAATAACTC--TGCAATTCTTTTGT-CATGTCCTCTCTTCTTTTACATACTT-GGGAACTTGCACAGATACTAAAA-TCTCCAACAAAGTAT--ACA-TGTTGCAAGGT-TCACATTGGTAAAATACCAAA-CAGCCTTGGTATATTTTTTTCTATTGTAGTAGAATATTGTTTT---T----GGTAAAAGGGAATAGCCTTGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GA-TGATTCG--C--AGTATGC-----CTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTTAAAAT-GCTG-CTGTAC-CAAGTA-TTATC-AAATGA-ATCTGTAAA--AAA--AACAAGAATATTTTTT-AATATTGTGCAAATGCCAAATC--GTATTGG-ACAAAGCATGCACATTTNGAA-AGATACTAACAATATAT-TTTTTAAAAATAT-CATCATATT-AT-GCACAAACATAACCATT-TGTATT--TAGAAGCAT-AAAAAANG-ATG--AGGGACT-CATAAATTAAA--TCGGGCCA-ATATCAGGGAT-GCAGTGCTGGAT-C---TAGAGGGG-ACAATAAAATTCCACCTTCACCAACCTC--AGCTTCAACAT-TATT-AAAAATGGATATTC-TTTTGTTGT---TCATTTTAGGATCTTCGACACCCCCCCCC-------------ACG----AGTTTT-----CCGT---T---TCCC---T---TATACNTTTT-ATT---GC--AAAAATAGGTTTTG-TTTTG-AAACAA--TAATTCCTGAACT-CAG--TCTTGCT--CTAATATCTAAA-TT-AT--GAAG-------------ANAA-TAAA--------T-AAC-----AT---TANATAT---TCTATTGATGCA-ATACACAA-TGTTAC--AAATC-AT----ATG---AACATAG-AAT-AATNCTA---TT-TTGAGT-------TAGG--AAAAT--TNTTGCATTCTTTT--AAAATCTTG-CAGTCAT-TGAATATGTGCGTTTGTGTTGTGGCTATGTGCAGG---TAAGACACGATA-TCTC-----AGACC-AAAACCCTGCA--AA-CATG-TATGTAAAACAAATTGNCTGTAAATAGTTTTGATAAAGTGCTNCAGATATGCGCTCCTAAATNGATTGTTNTGNAAATACTTTAGATCATGCCTNTGGCAAAATAATGTATAAAAGTCGATCTGATCGTAATTCAAAACTTACCANACTATGTTGTACATATGATTTCTTTNNGCATACGAGNCCTGATGCATNCACCAATNAGACACTGTATACATGTACAGTAGTACACATCCANNTCTTGTAACAAAATTTAGAGTCATTACACACGACATTTATTTATCNTCACAGGCACCAGAAGTATGTANCAGGGAGTTTTCTATACACGT-----------------ACATAATT-GTACC--CCCCCCCCCCCG-----------TTTTT----CAAC-C----AAATACACA-TTTTT-TGGAATCCCCGTCATCTCAAAACTTACAGCAGAAA--C-T-GCCCCG-CAAAG-CG-ACTTNA-TGAAGGTGAATGGTGGGGAAATCATTGTTTCATNANTCTACNTTTCATTNGGNTGNANGGNTGCGTGTGTTTGGGGNGNNGGGNNGGTANGGACTATGG-T-GCGTGTGTTGGGGAGGGGGGTA-GCGC-GTAAGAC-GTGCTATTCT-CGG-TNAGAAC---TTTATGCATGTACTA--TTGACTAACTAC-ACACTG---TCACAGTTAAATT-ACATTCAAT-G----------ATT-GATAAAACAA---ANTTA---C-A-TTTGAAA--CGTGT----CGATCTGTTTTTCTCTC---CG---TTGCA-TGGGGCCT--NCANTGGC-T---AC-GG---C-TA-CA-GCAACGTAAACAATTAT-TTT-T-CTGT-GACTTTTGTTCT--GAAAATGGGGTATAT-CTCGCTCCTACTA-CCCTTTCTGG---GT--ACCGTGTGTCACTTTTACATTT--CCCCATGCGCA-GTT-CTTCAC-AATTT--T--AAAGC--GA-ATTCA-AA-----GCAATCTCGTT-AAAACATCTGCATCT-AAACA-CC-CAACCA-TGTG------------TTTTGA---CGGAGGTCATGGCGGAAAATTCTTCCCG-CGAT-TCTG-ATTGG-CTGTG-CGGAAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
Reference ( family-318 ) : GTGTAATTCANTACTATTTAATAAAAACACAANTATTNAATACAGATAGTGACTTAGTATTTCCAGCCAATTTAATAGAGAGCATTCCTGTGGGGTCACAATG-GAA-------CTGAA-T-C-CAACAC--AAAACAAGATACATA-AGTCAATATTGGACAAATACATAT--T-TA-CATCAA-TTGATCAATGTATAGT--TNTTGAAATTATA-AAAATTCTT-GATTCCAAAA-TAATGTNTCTGCN--CTCATCAGTGTTAAAATAACTC--TGCAATTCTTTTGT-CATGTCCTCTCTTCTTTTACATACTT-GGGAACTTGCACAGATACTAAAA-TCTCCAACAAAGTAT--ACA-TGTTGCAAGGT-TCACATTGGTAAAATACCAAA-CAGCCTTGGTATATTTTTTTCTATTGTAGTAGAATATTGTTTT---T----GGTAAAAGGGAATAGCCTTGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GA-TGATTCG--C--AGTATGC-----CTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTTAAAAT-GCTG-CTGTAC-CAAGTA-TTATC-AAATGA-ATCTGTAAA--AAA--AACAAGAATATTTTTT-AATATTGTGCAAATGCCAAATC--GTATTGG-ACAAAGCATGCACATTTNGAA-AGATACTAACAATATAT-TTTTTAAAAATAT-CATCATATT-AT-GCACAAACATAACCATT-TGTATT--TAGAAGCAT-AAAAAANG-ATG--AGGGACT-CATAAATTAAA--TCGGGCCA-ATATCAGGGAT-GCAGTGCTGGAT-C---TAGAGGGG-ACAATAAAATTCCACCTTCACCAACCTC--AGCTTCAACAT-TATT-AAAAATGGATATTC-TTTTGTTGT---TCATTTTAGGATCTTCGACACCCCCCCCC-------------ACG----AGTTTT-----CCGT---T---TCCC---T---TATACNTTTT-ATT---GC--AAAAATAGGTTTTG-TTTTG-AAACAA--TAATTCCTGAACT-CAG--TCTTGCT--CTAATATCTAAA-TT-AT--GAAG-------------ANAA-TAAA--------T-AAC-----AT---TANATAT---TCTATTGATGCA-ATACACAA-TGTTAC--AAATC-AT----ATG---AACATAG-AAT-AATNCTA---TT-TTGAGT-------TAGG--AAAAT--TNTTGCATTCTTTT--AAAATCTTG-CAGTCAT-TGAATATGTGCGTTTGTGTTGTGGCTATGTGCAGG---TAAGACACGATA-TCTC-----AGACC-AAAACCCTGCA--AA-CATG-TATGTAAAACAAATTGNCTGTAAATAGTTTTGATAAAGTGCTNCAGATATGCGCTCCTAAATNGATTGTTNTGNAAATACTTTAGATCATGCCTNTGGCAAAATAATGTATAAAAGTCGATCTGATCGTAATTCAAAACTTACCANACTATGTTGTACATATGATTTCTTTNNGCATACGAGNCCTGATGCATNCACCAATNAGACACTGTATACATGTACAGTAGTACACATCCANNTCTTGTAACAAAATTTAGAGTCATTACACACGACATTTATTTATCNTCACAGGCACCAGAAGTATGTANCAGGGAGTTTTCTATACACGT-----------------ACATAATT-GTACC--CCCCCCCCCCCG-----------TTTTT----CAAC-C----AAATACACA-TTTTT-TGGAATCCCCGTCATCTCAAAACTTACAGCAGAAA--C-T-GCCCCG-CAAAG-CG-ACTTNA-TGAAGGTGAATGGTGGGGAAATCATTGTTTCATNANTCTACNTTTCATTNGGNTGNANGGNTGCGTGTGTTTGGGGNGNNGGGNNGGTANGGACTATGG-T-GCGTGTGTTGGGGAGGGGGGTA-GCGC-GTAAGAC-GTGCTATTCT-CGG-TNAGAAC---TTTATGCATGTACTA--TTGACTAACTAC-ACACTG---TCACAGTTAAATT-ACATTCAAT-G----------ATT-GATAAAACAA---ANTTA---C-A-TTTGAAA--CGTGT----CGATCTGTTTTTCTCTC---CG---TTGCA-TGGGGCCT--NCANTGGC-T---AC-GG---C-TA-CA-GCAACGTAAACAATTAT-TTT-T-CTGT-GACTTTTGTTCT--GAAAATGGGGTATAT-CTCGCTCCTACTA-CCCTTTCTGG---GT--ACCGTGTGTCACTTTTACATTT--CCCCATGCGCA-GTT-CTTCAC-AATTT--T--AAAGC--GA-ATTCA-AA-----GCAATCTCGTT-AAAACATCTGCATCT-AAACA-CC-CAACCA-TGTG------------TTTTGA---CGGAGGTCATGGCGGAAAATTCTTCCCG-CGAT-TCTG-ATTGG-CTGTG-CGGAAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
gi|1 : GTGTAATTCAGTATTATTTAATAAAAACACAATTATTTAA-ACAGATAGTGACTTAGTATTTCCAGCCAATTTAA-AGAGAGCATTC-TGTGGGGTCACAATG-GAA-------CTGAA-T-CGTAACACTCAAGACAAGATACATA-AGTCAATATAGGACAAAGA-ATAT--T-TATCATCAAATTGATCAAT-TGCAGTAGTGTTGAAATTATA-AAAAATTCT-GATTCCAAAA-TAATGTCTCTGCATGCTCATCAGTGTTAAAATAACTCAGTGCAATTCTTTTGTTCATGTCC-CTCTTCTTTTACATACTTTGGGAACTTGCACAAATACAAAAAATCTCCAACAAAGTATCAACA-TGTTGCAAGGC--CA-ATTGGTAAAATATCAAATCAGCCTTGGTAT-TTTTTTTCTATTGTAGTAGAATGTTGTTTT---T----GGTAAAAAGGAGTAGC--TGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GA-TGATTCAGTCTGAGTATGC-----CTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTAAAAATCGCTG-CTGTAC-CAAGTA-TTATCGAAATGA-ATCTGTAAACAAAG--AACAAGAATATTTTTTTAATAT-ATGCAAATACCAAATC--ATAATGG-ACAAAGCATGCACATTATGTA-AGA-ACAAACAATTTTT-TTTTTAA---TATGCATCATATT-ATTGCACAAACATAACCATT-TGTATT--TAGAGGCAT-AAAAAAAA-ATT--AGGGACT-CATAAATGAAT--TTGGGTCATATATCAGGGAT-GCAGT-CTGGAT-C---AAGAGGGACACAATACAGTTTCCCCTTCACCAACCTC--ATCTTCAATAT-CATT-AAAAATGGATCTTC-TTTTGTTGT---TCATTTCTAGATCTTCGACAACCCACCCA-------------ATGGTATAGTTTT-----CCAT---TATATCCCGGATTTATATACATTTC-ATT---GC--AAAAATAGGCTTTG-TTT---GAACAA--TAATTTCTGAACT-CAG--TCTTGCT--CTAATATCTAAA-TT-AT--GAAGCTTATTGTGTACAATAA-TAAA--------TGAAC-----ATAGATAAATAT---TCTATTGTTG-A-GT-----T-TCTTA---AAATC--T----TTGACCAACATTGTAAT-AGTGCTA---CT--------------------GAAAC--TTTTGCATTCTTTTTAAAAATCTTG-CAGTCAT-TGAA-ATGTGCATGTGT-TTGTGGCTCTGTGCAGG----AA------ATAGTTTCAAAAGAGATC-AAAACCCTGCA------ATA-TATGT------AATTGTTTGTAAA-AGTTTTGAT-AAGTACTACA-ATATGCGCTCCTAAATTGATT-TTATGAAAATACTTTAGAT-ATGCCTTTGGCAAAATAATGT-TAAAAGTCGATCTGATCATAATTCAAAACTTACCATACTATGTTGTACATATGATTTCTTTTAGCATAC--ATCCTGATGCATACACT-ATAAGACAC---AT---TGTAT-------CACATCCAGCTCTTGT-ACAAAATTTAGAGTCATTACACACGACATTTATTTATTTTCACA-GCATCAGAAGTATGTAATAGGGAGTTTTCTATACG-GTC----------------ACATAGCTAGTACA--CCCCCCCCCCC--------------TTTAAAAAAAC-CCCAAAAATACACA-TTTTTATGGAATCCCCGTCATCTCAAAACTTACAGCAGGAAATC-T-GCCCCGCCAAAGCCGCACTTAACTGAAGGTGAAT-GTCGGGAAATC---------TAAGTCTACGTTTCATTTAGGTGCATAGGTGCGT-TGTTT----TGTTGGGTCGGTAAGG-------------------GGGGGGGGGGGTATGTGCAGTAAGAC-GTGCTATTCTCCAG-TCAGAACACACGTATGCATGTACTA--TTATCTAA-TAC-AAACTG---TCACAGTTAAATT-ACATTC-AT-G----------ATT-GATAAAACAA---ATTTA---C-ATTTTGAAA--CGTGT----CGATCTGTTTTTCTCTC---GT---TTGAA-T-GGGCCT--ACACTGGCTT---AC-AG---C-TA-CA-GCAACGTAAACAATTAT-ATT-T-CTGT-GAC-TTTGTTCT--GAAAAT-GGGTATAT-CTCGCTCCTACTA-AGCCTTCTGGTCAAT--ACCGTGTGTCACTTTTACATTTTACCCCATGCGCAGGTT-TTTCAC-AATTCAAT--AATGC--GA-ATTCATAA-----GCAATCTCGTT-AAAACATCTGCATCTAAAACAGCC-CAACCA-TGTG-------------TTTGA---CGGAGGTCATGGCGGAAAATTCTTCCCG-CGAT-TCTG-ATTGGTCGGTG-CGGAAGAT--GTAACT-CCTCACTCCCCTGACGAC
gi|10 : TTTCTATTGTAGTAGA--------------------TAAAGGG--ATGGC-TTGTTGATGGGGTTGATCTGATAACTGGAGTTG---TG-GA-TGATT----A--AGTATACTAGTACTCTA-TTCTGCT-----------------GT-GTAATTCTTTGAC-----GT-GCTG-CTGTAC-CAAGTA-TTATC-A
gi|10 : TT-ATCATTGTGCAAATGCCAAATC--ATAttgtgcaaatgccaaatcataaac
gi|11 : tttctattgtagtagataaagggatggcttgttgatggggttgatctgataactggagttgtggatgattaagtatactagtactctattctgctgtgtaattctttgacgtgctgctgtaccaagtaTATTGTTAT---T----GGTATAAGGGA-TGGCCT----------GTT-ATCTGGCAACTGGAGTTGTAGAT-GA-TGATTC------AGTATGC------TCTG-T--TGTTGAAGAATATTCTCTGCTGC-ATAGTTCTTTGACG-AAAAT-GCCG-CTGTAC-TAAaac
gi|12 : AAATT-ACATTCAATTG----------ATT-GATAAAACAA---AGTTA---C-A-TTTGAAA--CGTGT----CGATCTGTTATTGTAAC---TG---TAGCA-TGGGGCCCCGACATGGG------AC------C-TA-CA-GC-ACGTAAACAATTAT-TTT-T-CTGT-G
gi|13 : TATACACAT-----------------ACATAAT--GTAAC--CCCCTCCCCCAGGCCCCTCCCTTTTTTT----CAAC-C----AAATACACATTTTTT-TGGAATCTC
gi|14 : aggttatcgtaaatacgttacgtagatagatTCACCAACCTC--AGCTTCAACAT-TATT-AAAAGTGGATATTC-TAATGTTG----TCATTTTCGGA---TCGAC-CCCCCCCCC-------------CCGTGT-AGTTTT-----CCGT---T---C------------TACATTTT-ATT---GC--AA
gi|15 : AAC-C----AAATACACA-TTTTT-TGGAATCCCCGTAATCTCAAAACTTAAAGCAGAAA--CTT-GCCCCG-CAAAG-CG-ACTTCA-TGAAGGTGAATGGTGGGGAAATC
gi|16 : TATACAT---------------------ATAA---GTACC--CCTCCCCCCTCC-----------TTTTT----TA------------------TTTTT-GGGAATCCCCGTCATCTCAAAACTCACAGCAGAAA--C-TGGCCCCG-CAAAG-CG-ACTTta
gi|17 : gatctA-AGATACAAACAAT-T-T-TTTTTAAACATTT-CATCATATT-AT-GCACAAACATAATCATTGTATATTAATAGAAGCATAAAAAAAAA-ATG--AGGGACT-CA
gi|18 : gtACACGTAGATATATATTGCATACACATAA-T-GTGCCCTCCCCCCCCCCTGTTTTT------TTTTT----CAAC-C----AAACACACA-TTTTT-TGGA
gi|19 : aggttatcgtatacgAAAAGGGAA-AGCCT-GTTGATAGGGTTGATCTAATAACTGAAGTTG---AT-GA-TGAT--A--C--AGTATG------CTCTG-T--TGATGAATA------------GT-GTGGTTC
gi|2 : GTATAATTCATT-CTATTTA-TAAA----CAAATATTAAATACAG-TAG--ACTTAGTATTTC-AGCCAATTTAATAAA----ATTCCTATGGGGTCACAATG-GAA-------CTGAA-TTC-CAACAC--AAA-CAAGAT-CATA-AGTCAATATTG-ACAAATATATATATT-TA-C-TCA---TGATCAATGTATAGT--TCTTGAAAT-ATA-AAAATTCTTTGATTCCAAAA-TAATGTATCTGCT---TCATCAGTGTTAAAATAATT----G-AATTCTTTTGT-CTTGTCCTCT--TCTTTTACATGCTT-GGGAATTTGCACAGATATTAAAA-TCTCC-ACAAAGTAT--ACATTGTTGCAAGGT-TCACATT-GTAAAATA-CAAA-CAG-CTTGGTATATTTTTTTCTATTGTAGTAGAATATTGTTTT---TTGCCGGTAAAAGGG-ATAG-CTTGTTGATAAGGTTGATCTAATAACT-GAGTTG---AT-GATTGATTCG--C--AGTATG------CTCTG-T--TGATGAAGA------------GT-GTGATTCTTTGACTTAAAAT-GCTGCCTGTAC-CAAGTA-TTATC-AAATGACAT-TGTAAG--AAAACAACAAGAATATTTTTT-AATATTGTGCAAATGCCAATTCA-GTATTGG-ACAAAGCATGCACATTTAGAAGAGATA-TAACAATTTAT-CTTTTAAAA---------------AT-GCACAAACATCAC--TT-TGTATT--TAGAAGCAT-AAAAAATGCATT--A-GGACT-CATAAATTTAA--CTGGGCCA-ATATCAGGGAT-GCAGTGATGGAT-CTATTAGAGGGG-ACAATAAATTCTCACCTTCACACACCTCAAAGCTTCAACAT-TATTAAAAAAGGGATATTCTTTTTGTTG----TCATTTTAG--TTTTC--CCCCCCCCCCC-------------CCC----AGT----------G-------------------TATAGTTTTA-ATT---GC--AAAAATAGGTTTTG-TTTTG-AAGCAA--TCATT-CTGAACT-CAG--TCTTGCT--CTAATATC-AAA-TTAAT--GAAA-------------GCA---AAA--------T-AAC-----AT---TATATAT---TTTACTGATGCA-ATACACAA-TGTTAC--AAATA-AT----ATG---AACATAA-AAT-AATTCTA---TTATTGAGT-------TAAA--AAAATC-TGTTGCATT-GTTT--AAAATTTTGCCAGTCATATGAATATGTGTGTTTGTGT------TATGTGCAGGTAATAAGACATGATA-TCTC-----AGA-C-AAAACCCTGCA--AATCATG-TATGTAAAACAAATTGAC--TAAATAATTTTAATAAAATGCTTTAGATATG----CTTAAATGAATTGTTTTGTAA------TAGATCATGCC-ATGGCAAA--AATATATAAAAGTCGATCTGATCGTAATTTAAA--TTATCAAACTATGTTGT--ATATAATTTCTTTATGCATATGAGGCCTGATGCATCCACCAATTAGACACTGTATACATGTACAGTAGTACACA-CCACATCTTGTAACAAAATTTAG-----TT--ACATGACATTTATTTATCATCACAGGCACCAGAAGTA-GTACCAAGG
gi|20 : GCGGATA-TTCT-CCCG-CCAT-TCTG-ATTGG-CTGTG-CGG-AGAT-GGCAACta
gi|21 : aT-GTAGGTTTTTGACTTGC--T-GCTA-CTGTAC-CAAGTA--TATC-CAA-GA-ATCTGTGAA--AA------AAGAATATTTTTagcatctttcgtagatagttcaacgtggtaatg
gi|3 : TGGGGTCACTATGTGAAAAGTTGTCTGAAGT-C-CAA-AC--AAAA--AGATAC-TACAGTCATTATTGG-CAAATACATGT--TATA-CATCAACTTGATCAATGTAT-GC--TATTGAA--TATATAAAATTCTT-GATTCCAAAACTAATGTGTTGGCC--CTCATTAGTGTTAAGATAA-TC--TGCAATTCTTTTGT-CATGCCCTCTTTTCTTTTACATACGT-GGGA-CTTGCAC-GATACTCAAA-TCTCCAACAA-GTA-----A-TGTTGCAAGGTCTCACATTGGTAAAATACCAAA-CAGCCTTGCTATA-TTTTTTCTATTGTAGTAGAATA-TGTTTTGCCG----GGTAACAGGG-ATA-CTTTGTTGAC--------TCTAATAATTGGAGATG---ATCGA-T-ATTCG--CA-AGTATG------CTCTGTT--TGATGAAGA------------GTGGTGATCTTTTGACTTAAAAT-GCTG-CTGTACACAAGTATTTATC-AAATGA-ATCTGTAGA--AGA--GA-AAG--TATTTTTT-AATATTGTGCAAATGCCAAATCCAGTATTGGAACAAAGCATG-ACAATTTAGA-AGATGCTAACATTATAT-TCTAT-AAAATAT-CATCATATTCATCGCACGAAAAT----ATT-TGTATT--TAGAAGCAT-AGAAAATG-A-G--AGGGACTACAT-AATTAAAGTTCGGGCCA-ATATCAGGGATCGCAATGCTGTATAC---TAGAGGGG---AAT-AAATTCTA-CTTC-CCAACCTC--AGCTT--ACATATATT-AAAAATGGATATTC-TTTTGTTATAAATCATTTTAGGA--TTCGA
gi|4 : tattTATACACGT-----------------ACATAATT-GTTGC--CCCCCCCCCTTG-----------TTTTT----CAACGC----AAACACACA-TTTTT-TGGAATCTCGGTCATATTCAAACTTACAGCAGAAA--C-T-GCCACG-CAAAG-CA-ACTTTA-TGAAGGTGAATGGTGGGGAAATCATTGTTTCATTATTTTACTTTTCATTGGGTTGAAGGGTTGCGTGTGTTTGGGGGGGGGGGGGGGTATGGACTATGG-TTGCGTGTGTTGGGGAGTGGGG---GTGC-ATAAGAC-GTG-TATTCT-CGG-TTAAAAC---TTTAT-CATGTACTA--TTGACTAATTAC-ACACTG---TCACAGTTAAATT-ACATTCAAT-T----------ATT-GATAAAAC-------TTA---CCA-TTTGAAA--CGTGT----CGATCTGTTTTTCTCTC---C-----TGCA-TTGG---T--TGAATGG---------GG---CCTA-CA-GCAAAGTAA-CAATTAT-TTT-TTCTGT-GAATTTTGTTCT--GAAAATGGGGTATATTCTCACTCC-ACTA-TCCTTTCTGG---GT--AC-GTGTGTCACTTATA-ATTT--CCCCATGCGCA-GTTTCTTCAC-AATTT--T--AAAGC--GA-ATTCA-AA-----GCAATCTCATT-AAAAAATCTGCATCT-AAACA-CC-TCACCA-TGTGCACCATCGGTTGTTTTGA---CGGAGGTCA-GGCGGAAAATTCT-CCCG-CGAT-TCTG-ATTGG-CTGTG-CG-AAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
gi|5 : taggttatcgtatatgtcactgtagatagatcttatacacatgATCAGGGAT-GCAGTGCTGGAT-C---TAGAGGGGGACAATAAA-TTCTACCTTTACCAACCTC--AGCTTCAACAT-TATT-AAAAATGAATATTC-TTTTGTTGT----CATTTTAGGATCTTCGACACCTCCCCCCCTTCCCATCCCATAAG----AGTGTTATTAGTCGTATTC---TCCT---T---TCTACTTTTTTATTTCGGCCTAAAAATAGGTTTTGGTTTTGGAAACAAATCAGTTCTTGAACTGCAGGGTCTTGCTTTCTAATAGCTAAAATT-ATTTGAAG-------------AAAAATAAAACCATTTAT-AACCTTTAAT---TGCATATAGGCCTGTT-ATGCACATACACAAATGTCATTAAAATCGATCTAAATG---AAGACA--AATGAATACTAAATTC-TTAAATCTACTTGTAGGTTAAAATAATCTTGCATTCTTTT--AAA-TCTTG-CAGTCAT-TGAATATGTGTGTTTGTGTTATGGC-AT------G---TAAAACACGATA-TCTC-----AGACCAAAAACCCTGCAAGAA-CCTGATATGTgtg
gi|6 : TATGGGT-GCGTGTGTTG---AGGGGGGTA-GC-T-ATAAGACTGT-CTAATCT-CGGGTAAGAAC---TT-ATGCATGTACTAATTTGACTAACTACTACACTAGCCCCACAGTTAAATTTACATTCAAT-GCTACATATTTATTTGATAAAACAAGAGACTTAAGTCGA-TATGAAATACGTGTGGCTCGATCTCTTATTTTCTC--------TTGCA-TGCAAC-T--GCAATGGC-TTGAAT-GGGGCC-TA-CA-GCA-CGTAAACAATTAT-TTT-T-CTGT-GACTTTTGTTCT--GAAAATGGGGTATAT-CTCACTCCTATTA-CCCTTTCTGA---GT--ACCGTGTGTCACTGTTACATTC--CCCCATGCGCA-TGT-CTTCAC-AATTT--T--CAAGC--GA-ATTCA-AA-----GCAATCTCTTTAAAAACATCTGCATCT-AAACA--T-CA------GTG------------TTTTGACGTCGGAGGTCATGACGGACAATTC-TCCCG-CGAT-TCTG-ATGGG-CTGTG-C-GAAGAT-GGTAACT-CCAC-CTCCCCTGACGACtt
gi|7 : ----CGATCTGTTTTTCTCTCTCTCGATTTTGAAGTGGGGCCT--TCACTGGC-T---ACCAG---C-TAGCAAGCACCGTAAACAATTATATTTGT-CTGTTGACTTTTGTTCTTCGAAA-TGGGTTATAT-C--GCTTCTACTAGCCTTTTCTGAA--GTTCACCGTGTTTCACTTTTACATTA--CCCCA-GCGCA-GTT--TTCACCAATTT--TTCAAAGCCCGATATTCA-AAAGGAAGCAATCTCGTT-AAAACATCTGCATCT-AAACA-CCTCAACCATTGTG------------TTTTGA---CGGAGG-CATGGCGGAAAATTCTTCCCGCCGATCTCTGAATTGG-CTGTGCCAGAAGATGGGTAACTCCCAA-CTCCCCT-ACGAgtggaa
gi|8 : GAATATTTTTT-AATATTGTGCAAATGCCAA---------------------TGCACATTTAGAA-AGATGCTAACACTATAT-CTTATAAAAATAT-CATCATAGT-AT-GCTCAAACATATC--TT-TGTATT--TAGAAGCAT-AAAAAATG-A-G--AGGGACT-CATAAATTAAA--TCGGGCCA-ATATCAGGGAT-GCAGTGTTGTAT-C---TAGAGGGG-ACAAT-AAATTCTACCTTCACCAACCTC--AGCTTCAACAA-TATT-A---------ATTC-TGTTGTTGT---CC-TTTTAGGATCTTTGACACCCCCCCCA-------------ACgtg
gi|8 : CACCCCCCCCAACCTC--AGCTTCAACAA-TATT-AActcagcttcaacaatattaatt
gi|9 : gaatattttttaatattgtgcaaatgccaatgcacatttagaaagatgctaacactatatcttataaaaatatcatcatagtatgctcaaacatatctttgtatttagaagcataaaaaatgagagggactcataaattaaatcgggccaatatcagggatgcagtgttgtatctagaggggacaataaattctaccttcaccaacctcagcttcaacaatattaattctgttgttgtccttttaggatctttgaAACAATATATATTTTTAAAAATAT-AATCATATT-AT-GCACACTTATAATCA-T-TGTGTT--TAAAAGTAT-TAAAAAAA-ATGAAAGGGGCT-CATAACACAAA--TCAGGtt
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 1 1 2222 1 1 11 1 1 2222 1 1 4444444 22222 11 11 1 11 1 2222 1 33 11 111 1 1 1 2222 22222 1 1 1 1 2222222 22 1 1 11 33333333 111111111 111 3333333 333333 333333333333 11 1 11 222222 222 1 1 1111 1111 11 1 111 11 1 22222 66666666666666666666666666666666666666666666666666666 11 111 11 1 111 11 1 1 11 11 1 1 11 111111111111111111111111111111111111111111111 222 1111111111 333 4444444444444 22 1 0000000000000000000000000 33 11 1 1 1111111 3333 1 1 33333 111 33333 1 333333 11 1 1 1 2222 1 333333 1 11 11 1 11 11 11 1 22222222 3333333 1 1 22222 11 1 1 66666666666666666666 222 11 6666666666666 1111 111111 111111 1 1 1 1 333333333 1 22222 3333333333 222222222 1 11 1 1 222222 11 1 1 222 1 555555555555 1 1111111 2222222 11 1111 44444444 111 55555555555555 11 1 11 222 11 111 1 11 1 11111 11 1 1 22222 1 1 1111 1 5555555555555 111 11 1 1
lowQualScore : 1 5 5 4444 1 1 5 5 88 5 5 3333 5 3 3333333 11111 6 88 44 7 7 3 44 2 2222 3 7 44 6 7 88 1 333 3 3 3 1 6666 88888 6 3 7 2 3 7 7 3 7 7 7777777 00 6 6 2 3 6 44 3 5 1 11111111 666666666 66 2 111 6 6 3333333 111111 6 99 444444444444 5 00 3 6 6 6 88 8 3 0 2 33 777777 0 8 0 6 000 3 0 2 1 1 8 0 1 7 3 6 3 6 6 3 2222 6 99 6 1 6 4444 6 0 11 0 8 8 444 66 0 9 1 77 5 5 6 00000 88 5 44444444444444444444444444444444444444444444444444444 3 1 11 777 33 3 999 88 2 3 88 88 7 3 3 88 777777777777777777777777777777777777777777777 1 333 6 6 5555555555 000 4444444444444 55 3 1 7777777777777777777777777 11 1 6 88 7 3 3 7 0 6 2222222 6 0000 2 3 3 33333 555 88888 3 000000 1 88 5 5 1 5 3333 1 5 1 1 000000 5 66 88 5 88 1 88 22 88 1 1 5 1 44444444 2222222 5 22 5 66666 88 1 5 5 1 66666666666666666666 777 11 4444444444444 7777 555555 6 6 444444 0 0 0 1 3 6 888888888 1 1 1 1 1 1 1 1 5 33333 22 22 1 7777777777 6 666666666 3 33 3 3 1 555555 6 88 2 3 333 0 3 000000000000 0 9999999 8888888 33 7777 1 66666666 8 5 3 5 222 1 00000000000000 8 8 8 66 0 8 8 8 8 3 33 3 2 0 3 3 00 777 33 2 2 555 3 0 66 0 88888 33 0 0 55555 0 0 0 6666 3 0 4444444444444 777 3 3 1 0 11 8 8 8 8 8 444 8 0 0 2
lowQualScore : . . . .... . . . . .. . . .... . . ....... ..... . .. .. . . . .. . .... . . .. . . .. . ... . . . . .... ..... . . . . . . . . . . ....... .. . . . . . .. . . . ........ ......... .. . ... . . ....... ...... . .. ............ . .. . . . . .. . . . . .. ...... . . . . ... . . . . . . . . . . . . . . . .... . .. . . . .... . . .. . . . ... .. . . . .. . . . ..... .. . ..................................................... . . .. ... .. . ... .. . . .. .. . . . .. ............................................. . ... . . .......... ... ............. .. . . ......................... .. . . .. . . . . . . ....... . .... . . . ..... ... ..... . ...... . .. . . . . .... . . . . ...... . .. .. . .. . .. .. .. . . . . ........ ....... . .. . ..... .. . . . . .................... ... .. ............. .... ...... . . ...... . . . . . . ......... . . . . . . . . . ..... .. .. . .......... . ......... . .. . . . ...... . .. . . ... . . ............ . ....... ....... .. .... . ........ . . . . ... . .............. . . . .. . . . . . . .. . . . . . .. ... .. . . ... . . .. . ..... .. . . ..... . . . .... . . ............. ... . . . . .. . . . . . ... . . . .
lowQualScore : 0 5 5 0000 0 0 5 5 00 0 5 0000 0 3 3333333 00000 7 33 00 3 3 3 00 0 7777 3 3 00 7 3 33 0 777 3 3 3 0 0000 00000 7 3 3 0 3 3 3 3 3 3 3333333 77 7 7 0 3 7 77 2 6 0 66666666 555555555 77 5 777 7 7 7777777 777777 7 22 222222222222 7 77 2 7 7 7 88 0 2 0 5 88 222222 8 0 8 0 444 5 0 5 0 2 0 8 4 8 5 7 2 7 7 3 8888 7 22 7 0 7 8888 7 8 00 0 0 0 000 88 6 0 4 99 7 7 7 77777 33 6 11111111111111111111111111111111111111111111111111111 0 0 22 555 88 3 000 33 0 3 33 33 3 3 3 33 333333333333333333333333333333333333333333333 0 333 7 7 3333333333 333 0000000000000 33 3 0 3333333333333333333333333 77 0 7 33 3 3 3 3 7 7 3333333 7 7777 0 7 3 33333 333 00000 3 000000 0 00 5 5 0 0 0000 0 0 0 0 000000 0 55 55 5 00 0 00 00 00 0 0 5 0 00000000 5555555 5 00 5 55555 00 0 0 5 0 22222222222222222222 222 00 4444444444444 0000 000000 7 7 888888 0 0 0 0 3 7 555555555 0 0 0 0 0 0 0 0 0 55555 00 00 0 3333333333 7 333333333 3 33 3 3 0 777777 7 33 0 3 333 0 2 000000000000 0 2222222 5555555 88 0000 4 22222222 0 0 2 0 000 0 00000000000000 0 0 0 44 8 0 0 0 0 2 88 2 5 0 2 2 22 555 88 5 5 000 2 0 55 0 55555 88 0 0 00000 2 0 0 5555 2 0 5555555555555 555 2 2 0 8 44 0 0 0 0 0 000 0 0 0 5
consensus : GTGTAATTCANTACTATTTAATAAAAACACAANTATTNAATACAGATAGTGACTTAGTATTTCCAGCCAATTTAATAGAGAGCATTCCTGTGGGGTCACAATG-GAA-------CTGAA-T-C-CAACAC--AAAACAAGATACATA-AGTCAATATTGGACAAATACATAT--T-TA-CATCAA-TTGATCAATGTATAGT--TNTTGAAATTATA-AAAATTCTT-GATTCCAAAA-TAATGTNTCTGCN--CTCATCAGTGTTAAAATAACTC--TGCAATTCTTTTGT-CATGTCCTCTCTTCTTTTACATACTT-GGGAACTTGCACAGATACTAAAA-TCTCCAACAAAGTAT--ACA-TGTTGCAAGGT-TCACATTGGTAAAATACCAAA-CAGCCTTGGTATATTTTTTTCTATTGTAGTAGAATATTGTTTT---T----GGTAAAAGGGAATAGCCTTGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GA-TGATTCG--C--AGTATGC-----CTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTTAAAAT-GCTG-CTGTAC-CAAGTA-TTATC-AAATGA-ATCTGTAAA--AAA--AACAAGAATATTTTTT-AATATTGTGCAAATGCCAAATC--GTATTGG-ACAAAGCATGCACATTTNGAA-AGATACTAACAATATAT-TTTTTAAAAATAT-CATCATATT-AT-GCACAAACATAACCATT-TGTATT--TAGAAGCAT-AAAAAANG-ATG--AGGGACT-CATAAATTAAA--TCGGGCCA-ATATCAGGGAT-GCAGTGCTGGAT-C---TAGAGGGG-ACAATAAAATTCCACCTTCACCAACCTC--AGCTTCAACAT-TATT-AAAAATGGATATTC-TTTTGTTGT---TCATTTTAGGATCTTCGACACCCCCCCCC-------------ACG----AGTTTT-----CCGT---T---TCCC---T---TATACNTTTT-ATT---GC--AAAAATAGGTTTTG-TTTTG-AAACAA--TAATTCCTGAACT-CAG--TCTTGCT--CTAATATCTAAA-TT-AT--GAAG-------------ANAA-TAAA--------T-AAC-----AT---TANATAT---TCTATTGATGCA-ATACACAA-TGTTAC--AAATC-AT----ATG---AACATAG-AAT-AATNCTA---TT-TTGAGT-------TAGG--AAAAT--TNTTGCATTCTTTT--AAAATCTTG-CAGTCAT-TGAATATGTGCGTTTGTGTTGTGGCTATGTGCAGG---TAAGACACGATA-TCTC-----AGACC-AAAACCCTGCA--AA-CATG-TATGTAAAACAAATTGNCTGTAAATAGTTTTGATAAAGTGCTNCAGATATGCGCTCCTAAATNGATTGTTNTGNAAATACTTTAGATCATGCCTNTGGCAAAATAATGTATAAAAGTCGATCTGATCGTAATTCAAAACTTACCANACTATGTTGTACATATGATTTCTTTNNGCATACGAGNCCTGATGCATNCACCAATNAGACACTGTATACATGTACAGTAGTACACATCCANNTCTTGTAACAAAATTTAGAGTCATTACACACGACATTTATTTATCNTCACAGGCACCAGAAGTATGTANCAGGGAGTTTTCTATACACGT-----------------ACATAATT-GTACC--CCCCCCCCCCCG-----------TTTTT----CAAC-C----AAATACACA-TTTTT-TGGAATCCCCGTCATCTCAAAACTTACAGCAGAAA--C-T-GCCCCG-CAAAG-CG-ACTTNA-TGAAGGTGAATGGTGGGGAAATCATTGTTTCATNANTCTACNTTTCATTNGGNTGNANGGNTGCGTGTGTTTGGGGNGNNGGGNNGGTANGGACTATGG-T-GCGTGTGTTGGGGAGGGGGGTA-GCGC-GTAAGAC-GTGCTATTCT-CGG-TNAGAAC---TTTATGCATGTACTA--TTGACTAACTAC-ACACTG---TCACAGTTAAATT-ACATTCAAT-G----------ATT-GATAAAACAA---ANTTA---C-A-TTTGAAA--CGTGT----CGATCTGTTTTTCTCTC---CG---TTGCA-TGGGGCCT--NCANTGGC-T---AC-GG---C-TA-CA-GCAACGTAAACAATTAT-TTT-T-CTGT-GACTTTTGTTCT--GAAAATGGGGTATAT-CTCGCTCCTACTA-CCCTTTCTGG---GT--ACCGTGTGTCACTTTTACATTT--CCCCATGCGCA-GTT-CTTCAC-AATTT--T--AAAGC--GA-ATTCA-AA-----GCAATCTCGTT-AAAACATCTGCATCT-AAACA-CC-CAACCA-TGTG------------TTTTGA---CGGAGGTCATGGCGGAAAATTCTTCCCG-CGAT-TCTG-ATTGG-CTGTG-CGGAAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
Reference ( family-318 ) : GTGTAATTCANTACTATTTAATAAAAACACAANTATTNAATACAGATAGTGACTTAGTATTTCCAGCCAATTTAATAGAGAGCATTCCTGTGGGGTCACAATG-GAA-------CTGAA-T-C-CAACAC--AAAACAAGATACATA-AGTCAATATTGGACAAATACATAT--T-TA-CATCAA-TTGATCAATGTATAGT--TNTTGAAATTATA-AAAATTCTT-GATTCCAAAA-TAATGTNTCTGCN--CTCATCAGTGTTAAAATAACTC--TGCAATTCTTTTGT-CATGTCCTCTCTTCTTTTACATACTT-GGGAACTTGCACAGATACTAAAA-TCTCCAACAAAGTAT--ACA-TGTTGCAAGGT-TCACATTGGTAAAATACCAAA-CAGCCTTGGTATATTTTTTTCTATTGTAGTAGAATATTGTTTT---T----GGTAAAAGGGAATAGCCTTGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GA-TGATTCG--C--AGTATGC-----CTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTTAAAAT-GCTG-CTGTAC-CAAGTA-TTATC-AAATGA-ATCTGTAAA--AAA--AACAAGAATATTTTTT-AATATTGTGCAAATGCCAAATC--GTATTGG-ACAAAGCATGCACATTTNGAA-AGATACTAACAATATAT-TTTTTAAAAATAT-CATCATATT-AT-GCACAAACATAACCATT-TGTATT--TAGAAGCAT-AAAAAANG-ATG--AGGGACT-CATAAATTAAA--TCGGGCCA-ATATCAGGGAT-GCAGTGCTGGAT-C---TAGAGGGG-ACAATAAAATTCCACCTTCACCAACCTC--AGCTTCAACAT-TATT-AAAAATGGATATTC-TTTTGTTGT---TCATTTTAGGATCTTCGACACCCCCCCCC-------------ACG----AGTTTT-----CCGT---T---TCCC---T---TATACNTTTT-ATT---GC--AAAAATAGGTTTTG-TTTTG-AAACAA--TAATTCCTGAACT-CAG--TCTTGCT--CTAATATCTAAA-TT-AT--GAAG-------------ANAA-TAAA--------T-AAC-----AT---TANATAT---TCTATTGATGCA-ATACACAA-TGTTAC--AAATC-AT----ATG---AACATAG-AAT-AATNCTA---TT-TTGAGT-------TAGG--AAAAT--TNTTGCATTCTTTT--AAAATCTTG-CAGTCAT-TGAATATGTGCGTTTGTGTTGTGGCTATGTGCAGG---TAAGACACGATA-TCTC-----AGACC-AAAACCCTGCA--AA-CATG-TATGTAAAACAAATTGNCTGTAAATAGTTTTGATAAAGTGCTNCAGATATGCGCTCCTAAATNGATTGTTNTGNAAATACTTTAGATCATGCCTNTGGCAAAATAATGTATAAAAGTCGATCTGATCGTAATTCAAAACTTACCANACTATGTTGTACATATGATTTCTTTNNGCATACGAGNCCTGATGCATNCACCAATNAGACACTGTATACATGTACAGTAGTACACATCCANNTCTTGTAACAAAATTTAGAGTCATTACACACGACATTTATTTATCNTCACAGGCACCAGAAGTATGTANCAGGGAGTTTTCTATACACGT-----------------ACATAATT-GTACC--CCCCCCCCCCCG-----------TTTTT----CAAC-C----AAATACACA-TTTTT-TGGAATCCCCGTCATCTCAAAACTTACAGCAGAAA--C-T-GCCCCG-CAAAG-CG-ACTTNA-TGAAGGTGAATGGTGGGGAAATCATTGTTTCATNANTCTACNTTTCATTNGGNTGNANGGNTGCGTGTGTTTGGGGNGNNGGGNNGGTANGGACTATGG-T-GCGTGTGTTGGGGAGGGGGGTA-GCGC-GTAAGAC-GTGCTATTCT-CGG-TNAGAAC---TTTATGCATGTACTA--TTGACTAACTAC-ACACTG---TCACAGTTAAATT-ACATTCAAT-G----------ATT-GATAAAACAA---ANTTA---C-A-TTTGAAA--CGTGT----CGATCTGTTTTTCTCTC---CG---TTGCA-TGGGGCCT--NCANTGGC-T---AC-GG---C-TA-CA-GCAACGTAAACAATTAT-TTT-T-CTGT-GACTTTTGTTCT--GAAAATGGGGTATAT-CTCGCTCCTACTA-CCCTTTCTGG---GT--ACCGTGTGTCACTTTTACATTT--CCCCATGCGCA-GTT-CTTCAC-AATTT--T--AAAGC--GA-ATTCA-AA-----GCAATCTCGTT-AAAACATCTGCATCT-AAACA-CC-CAACCA-TGTG------------TTTTGA---CGGAGGTCATGGCGGAAAATTCTTCCCG-CGAT-TCTG-ATTGG-CTGTG-CGGAAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
gi|1 : GTGTAATTCAGTATTATTTAATAAAAACACAATTATTTAA-ACAGATAGTGACTTAGTATTTCCAGCCAATTTAA-AGAGAGCATTC-TGTGGGGTCACAATG-GAA-------CTGAA-T-CGTAACACTCAAGACAAGATACATA-AGTCAATATAGGACAAAGA-ATAT--T-TATCATCAAATTGATCAAT-TGCAGTAGTGTTGAAATTATA-AAAAATTCT-GATTCCAAAA-TAATGTCTCTGCATGCTCATCAGTGTTAAAATAACTCAGTGCAATTCTTTTGTTCATGTCC-CTCTTCTTTTACATACTTTGGGAACTTGCACAAATACAAAAAATCTCCAACAAAGTATCAACA-TGTTGCAAGGC--CA-ATTGGTAAAATATCAAATCAGCCTTGGTAT-TTTTTTTCTATTGTAGTAGAATGTTGTTTT---T----GGTAAAAAGGAGTAGC--TGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GA-TGATTCAGTCTGAGTATGC-----CTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTAAAAATCGCTG-CTGTAC-CAAGTA-TTATCGAAATGA-ATCTGTAAACAAAG--AACAAGAATATTTTTTTAATAT-ATGCAAATACCAAATC--ATAATGG-ACAAAGCATGCACATTATGTA-AGA-ACAAACAATTTTT-TTTTTAA---TATGCATCATATT-ATTGCACAAACATAACCATT-TGTATT--TAGAGGCAT-AAAAAAAA-ATT--AGGGACT-CATAAATGAAT--TTGGGTCATATATCAGGGAT-GCAGT-CTGGAT-C---AAGAGGGACACAATACAGTTTCCCCTTCACCAACCTC--ATCTTCAATAT-CATT-AAAAATGGATCTTC-TTTTGTTGT---TCATTTCTAGATCTTCGACAACCCACCCA-------------ATGGTATAGTTTT-----CCAT---TATATCCCGGATTTATATACATTTC-ATT---GC--AAAAATAGGCTTTG-TTT---GAACAA--TAATTTCTGAACT-CAG--TCTTGCT--CTAATATCTAAA-TT-AT--GAAGCTTATTGTGTACAATAA-TAAA--------TGAAC-----ATAGATAAATAT---TCTATTGTTG-A-GT-----T-TCTTA---AAATC--T----TTGACCAACATTGTAAT-AGTGCTA---CT--------------------GAAAC--TTTTGCATTCTTTTTAAAAATCTTG-CAGTCAT-TGAA-ATGTGCATGTGT-TTGTGGCTCTGTGCAGG----AA------ATAGTTTCAAAAGAGATC-AAAACCCTGCA------ATA-TATGT------AATTGTTTGTAAA-AGTTTTGAT-AAGTACTACA-ATATGCGCTCCTAAATTGATT-TTATGAAAATACTTTAGAT-ATGCCTTTGGCAAAATAATGT-TAAAAGTCGATCTGATCATAATTCAAAACTTACCATACTATGTTGTACATATGATTTCTTTTAGCATAC--ATCCTGATGCATACACT-ATAAGACAC---AT---TGTAT-------CACATCCAGCTCTTGT-ACAAAATTTAGAGTCATTACACACGACATTTATTTATTTTCACA-GCATCAGAAGTATGTAATAGGGAGTTTTCTATACG-GTC----------------ACATAGCTAGTACA--CCCCCCCCCCC--------------TTTAAAAAAAC-CCCAAAAATACACA-TTTTTATGGAATCCCCGTCATCTCAAAACTTACAGCAGGAAATC-T-GCCCCGCCAAAGCCGCACTTAACTGAAGGTGAAT-GTCGGGAAATC---------TAAGTCTACGTTTCATTTAGGTGCATAGGTGCGT-TGTTT----TGTTGGGTCGGTAAGG-------------------GGGGGGGGGGGTATGTGCAGTAAGAC-GTGCTATTCTCCAG-TCAGAACACACGTATGCATGTACTA--TTATCTAA-TAC-AAACTG---TCACAGTTAAATT-ACATTC-AT-G----------ATT-GATAAAACAA---ATTTA---C-ATTTTGAAA--CGTGT----CGATCTGTTTTTCTCTC---GT---TTGAA-T-GGGCCT--ACACTGGCTT---AC-AG---C-TA-CA-GCAACGTAAACAATTAT-ATT-T-CTGT-GAC-TTTGTTCT--GAAAAT-GGGTATAT-CTCGCTCCTACTA-AGCCTTCTGGTCAAT--ACCGTGTGTCACTTTTACATTTTACCCCATGCGCAGGTT-TTTCAC-AATTCAAT--AATGC--GA-ATTCATAA-----GCAATCTCGTT-AAAACATCTGCATCTAAAACAGCC-CAACCA-TGTG-------------TTTGA---CGGAGGTCATGGCGGAAAATTCTTCCCG-CGAT-TCTG-ATTGGTCGGTG-CGGAAGAT--GTAACT-CCTCACTCCCCTGACGAC
gi|10 : TTTCTATTGTAGTAGA--------------------TAAAGGG--ATGGC-TTGTTGATGGGGTTGATCTGATAACTGGAGTTG---TG-GA-TGATT----A--AGTATACTAGTACTCTA-TTCTGCT-----------------GT-GTAATTCTTTGAC-----GT-GCTG-CTGTAC-CAAGTA-TTATC-A
gi|10 : TT-ATCATTGTGCAAATGCCAAATC--ATAttgtgcaaatgccaaatcataaac
gi|11 : tttctattgtagtagataaagggatggcttgttgatggggttgatctgataactggagttgtggatgattaagtatactagtactctattctgctgtgtaattctttgacgtgctgctgtaccaagtaTATTGTTAT---T----GGTATAAGGGA-TGGCCT----------GTT-ATCTGGCAACTGGAGTTGTAGAT-GA-TGATTC------AGTATGC------TCTG-T--TGTTGAAGAATATTCTCTGCTGC-ATAGTTCTTTGACG-AAAAT-GCCG-CTGTAC-TAAaac
gi|12 : AAATT-ACATTCAATTG----------ATT-GATAAAACAA---AGTTA---C-A-TTTGAAA--CGTGT----CGATCTGTTATTGTAAC---TG---TAGCA-TGGGGCCCCGACATGGG------AC------C-TA-CA-GC-ACGTAAACAATTAT-TTT-T-CTGT-G
gi|13 : TATACACAT-----------------ACATAAT--GTAAC--CCCCTCCCCCAGGCCCCTCCCTTTTTTT----CAAC-C----AAATACACATTTTTT-TGGAATCTC
gi|14 : aggttatcgtaaatacgttacgtagatagatTCACCAACCTC--AGCTTCAACAT-TATT-AAAAGTGGATATTC-TAATGTTG----TCATTTTCGGA---TCGAC-CCCCCCCCC-------------CCGTGT-AGTTTT-----CCGT---T---C------------TACATTTT-ATT---GC--AA
gi|15 : AAC-C----AAATACACA-TTTTT-TGGAATCCCCGTAATCTCAAAACTTAAAGCAGAAA--CTT-GCCCCG-CAAAG-CG-ACTTCA-TGAAGGTGAATGGTGGGGAAATC
gi|16 : TATACAT---------------------ATAA---GTACC--CCTCCCCCCTCC-----------TTTTT----TA------------------TTTTT-GGGAATCCCCGTCATCTCAAAACTCACAGCAGAAA--C-TGGCCCCG-CAAAG-CG-ACTTta
gi|17 : gatctA-AGATACAAACAAT-T-T-TTTTTAAACATTT-CATCATATT-AT-GCACAAACATAATCATTGTATATTAATAGAAGCATAAAAAAAAA-ATG--AGGGACT-CA
gi|18 : gtACACGTAGATATATATTGCATACACATAA-T-GTGCCCTCCCCCCCCCCTGTTTTT------TTTTT----CAAC-C----AAACACACA-TTTTT-TGGA
gi|19 : aggttatcgtatacgAAAAGGGAA-AGCCT-GTTGATAGGGTTGATCTAATAACTGAAGTTG---AT-GA-TGAT--A--C--AGTATG------CTCTG-T--TGATGAATA------------GT-GTGGTTC
gi|2 : GTATAATTCATT-CTATTTA-TAAA----CAAATATTAAATACAG-TAG--ACTTAGTATTTC-AGCCAATTTAATAAA----ATTCCTATGGGGTCACAATG-GAA-------CTGAA-TTC-CAACAC--AAA-CAAGAT-CATA-AGTCAATATTG-ACAAATATATATATT-TA-C-TCA---TGATCAATGTATAGT--TCTTGAAAT-ATA-AAAATTCTTTGATTCCAAAA-TAATGTATCTGCT---TCATCAGTGTTAAAATAATT----G-AATTCTTTTGT-CTTGTCCTCT--TCTTTTACATGCTT-GGGAATTTGCACAGATATTAAAA-TCTCC-ACAAAGTAT--ACATTGTTGCAAGGT-TCACATT-GTAAAATA-CAAA-CAG-CTTGGTATATTTTTTTCTATTGTAGTAGAATATTGTTTT---TTGCCGGTAAAAGGG-ATAG-CTTGTTGATAAGGTTGATCTAATAACT-GAGTTG---AT-GATTGATTCG--C--AGTATG------CTCTG-T--TGATGAAGA------------GT-GTGATTCTTTGACTTAAAAT-GCTGCCTGTAC-CAAGTA-TTATC-AAATGACAT-TGTAAG--AAAACAACAAGAATATTTTTT-AATATTGTGCAAATGCCAATTCA-GTATTGG-ACAAAGCATGCACATTTAGAAGAGATA-TAACAATTTAT-CTTTTAAAA---------------AT-GCACAAACATCAC--TT-TGTATT--TAGAAGCAT-AAAAAATGCATT--A-GGACT-CATAAATTTAA--CTGGGCCA-ATATCAGGGAT-GCAGTGATGGAT-CTATTAGAGGGG-ACAATAAATTCTCACCTTCACACACCTCAAAGCTTCAACAT-TATTAAAAAAGGGATATTCTTTTTGTTG----TCATTTTAG--TTTTC--CCCCCCCCCCC-------------CCC----AGT----------G-------------------TATAGTTTTA-ATT---GC--AAAAATAGGTTTTG-TTTTG-AAGCAA--TCATT-CTGAACT-CAG--TCTTGCT--CTAATATC-AAA-TTAAT--GAAA-------------GCA---AAA--------T-AAC-----AT---TATATAT---TTTACTGATGCA-ATACACAA-TGTTAC--AAATA-AT----ATG---AACATAA-AAT-AATTCTA---TTATTGAGT-------TAAA--AAAATC-TGTTGCATT-GTTT--AAAATTTTGCCAGTCATATGAATATGTGTGTTTGTGT------TATGTGCAGGTAATAAGACATGATA-TCTC-----AGA-C-AAAACCCTGCA--AATCATG-TATGTAAAACAAATTGAC--TAAATAATTTTAATAAAATGCTTTAGATATG----CTTAAATGAATTGTTTTGTAA------TAGATCATGCC-ATGGCAAA--AATATATAAAAGTCGATCTGATCGTAATTTAAA--TTATCAAACTATGTTGT--ATATAATTTCTTTATGCATATGAGGCCTGATGCATCCACCAATTAGACACTGTATACATGTACAGTAGTACACA-CCACATCTTGTAACAAAATTTAG-----TT--ACATGACATTTATTTATCATCACAGGCACCAGAAGTA-GTACCAAGG
gi|20 : GCGGATA-TTCT-CCCG-CCAT-TCTG-ATTGG-CTGTG-CGG-AGAT-GGCAACta
gi|21 : aT-GTAGGTTTTTGACTTGC--T-GCTA-CTGTAC-CAAGTA--TATC-CAA-GA-ATCTGTGAA--AA------AAGAATATTTTTagcatctttcgtagatagttcaacgtggtaatg
gi|3 : TGGGGTCACTATGTGAAAAGTTGTCTGAAGT-C-CAA-AC--AAAA--AGATAC-TACAGTCATTATTGG-CAAATACATGT--TATA-CATCAACTTGATCAATGTAT-GC--TATTGAA--TATATAAAATTCTT-GATTCCAAAACTAATGTGTTGGCC--CTCATTAGTGTTAAGATAA-TC--TGCAATTCTTTTGT-CATGCCCTCTTTTCTTTTACATACGT-GGGA-CTTGCAC-GATACTCAAA-TCTCCAACAA-GTA-----A-TGTTGCAAGGTCTCACATTGGTAAAATACCAAA-CAGCCTTGCTATA-TTTTTTCTATTGTAGTAGAATA-TGTTTTGCCG----GGTAACAGGG-ATA-CTTTGTTGAC--------TCTAATAATTGGAGATG---ATCGA-T-ATTCG--CA-AGTATG------CTCTGTT--TGATGAAGA------------GTGGTGATCTTTTGACTTAAAAT-GCTG-CTGTACACAAGTATTTATC-AAATGA-ATCTGTAGA--AGA--GA-AAG--TATTTTTT-AATATTGTGCAAATGCCAAATCCAGTATTGGAACAAAGCATG-ACAATTTAGA-AGATGCTAACATTATAT-TCTAT-AAAATAT-CATCATATTCATCGCACGAAAAT----ATT-TGTATT--TAGAAGCAT-AGAAAATG-A-G--AGGGACTACAT-AATTAAAGTTCGGGCCA-ATATCAGGGATCGCAATGCTGTATAC---TAGAGGGG---AAT-AAATTCTA-CTTC-CCAACCTC--AGCTT--ACATATATT-AAAAATGGATATTC-TTTTGTTATAAATCATTTTAGGA--TTCGA
gi|4 : tattTATACACGT-----------------ACATAATT-GTTGC--CCCCCCCCCTTG-----------TTTTT----CAACGC----AAACACACA-TTTTT-TGGAATCTCGGTCATATTCAAACTTACAGCAGAAA--C-T-GCCACG-CAAAG-CA-ACTTTA-TGAAGGTGAATGGTGGGGAAATCATTGTTTCATTATTTTACTTTTCATTGGGTTGAAGGGTTGCGTGTGTTTGGGGGGGGGGGGGGGTATGGACTATGG-TTGCGTGTGTTGGGGAGTGGGG---GTGC-ATAAGAC-GTG-TATTCT-CGG-TTAAAAC---TTTAT-CATGTACTA--TTGACTAATTAC-ACACTG---TCACAGTTAAATT-ACATTCAAT-T----------ATT-GATAAAAC-------TTA---CCA-TTTGAAA--CGTGT----CGATCTGTTTTTCTCTC---C-----TGCA-TTGG---T--TGAATGG---------GG---CCTA-CA-GCAAAGTAA-CAATTAT-TTT-TTCTGT-GAATTTTGTTCT--GAAAATGGGGTATATTCTCACTCC-ACTA-TCCTTTCTGG---GT--AC-GTGTGTCACTTATA-ATTT--CCCCATGCGCA-GTTTCTTCAC-AATTT--T--AAAGC--GA-ATTCA-AA-----GCAATCTCATT-AAAAAATCTGCATCT-AAACA-CC-TCACCA-TGTGCACCATCGGTTGTTTTGA---CGGAGGTCA-GGCGGAAAATTCT-CCCG-CGAT-TCTG-ATTGG-CTGTG-CG-AAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
gi|5 : taggttatcgtatatgtcactgtagatagatcttatacacatgATCAGGGAT-GCAGTGCTGGAT-C---TAGAGGGGGACAATAAA-TTCTACCTTTACCAACCTC--AGCTTCAACAT-TATT-AAAAATGAATATTC-TTTTGTTGT----CATTTTAGGATCTTCGACACCTCCCCCCCTTCCCATCCCATAAG----AGTGTTATTAGTCGTATTC---TCCT---T---TCTACTTTTTTATTTCGGCCTAAAAATAGGTTTTGGTTTTGGAAACAAATCAGTTCTTGAACTGCAGGGTCTTGCTTTCTAATAGCTAAAATT-ATTTGAAG-------------AAAAATAAAACCATTTAT-AACCTTTAAT---TGCATATAGGCCTGTT-ATGCACATACACAAATGTCATTAAAATCGATCTAAATG---AAGACA--AATGAATACTAAATTC-TTAAATCTACTTGTAGGTTAAAATAATCTTGCATTCTTTT--AAA-TCTTG-CAGTCAT-TGAATATGTGTGTTTGTGTTATGGC-AT------G---TAAAACACGATA-TCTC-----AGACCAAAAACCCTGCAAGAA-CCTGATATGTgtg
gi|6 : TATGGGT-GCGTGTGTTG---AGGGGGGTA-GC-T-ATAAGACTGT-CTAATCT-CGGGTAAGAAC---TT-ATGCATGTACTAATTTGACTAACTACTACACTAGCCCCACAGTTAAATTTACATTCAAT-GCTACATATTTATTTGATAAAACAAGAGACTTAAGTCGA-TATGAAATACGTGTGGCTCGATCTCTTATTTTCTC--------TTGCA-TGCAAC-T--GCAATGGC-TTGAAT-GGGGCC-TA-CA-GCA-CGTAAACAATTAT-TTT-T-CTGT-GACTTTTGTTCT--GAAAATGGGGTATAT-CTCACTCCTATTA-CCCTTTCTGA---GT--ACCGTGTGTCACTGTTACATTC--CCCCATGCGCA-TGT-CTTCAC-AATTT--T--CAAGC--GA-ATTCA-AA-----GCAATCTCTTTAAAAACATCTGCATCT-AAACA--T-CA------GTG------------TTTTGACGTCGGAGGTCATGACGGACAATTC-TCCCG-CGAT-TCTG-ATGGG-CTGTG-C-GAAGAT-GGTAACT-CCAC-CTCCCCTGACGACtt
gi|7 : ----CGATCTGTTTTTCTCTCTCTCGATTTTGAAGTGGGGCCT--TCACTGGC-T---ACCAG---C-TAGCAAGCACCGTAAACAATTATATTTGT-CTGTTGACTTTTGTTCTTCGAAA-TGGGTTATAT-C--GCTTCTACTAGCCTTTTCTGAA--GTTCACCGTGTTTCACTTTTACATTA--CCCCA-GCGCA-GTT--TTCACCAATTT--TTCAAAGCCCGATATTCA-AAAGGAAGCAATCTCGTT-AAAACATCTGCATCT-AAACA-CCTCAACCATTGTG------------TTTTGA---CGGAGG-CATGGCGGAAAATTCTTCCCGCCGATCTCTGAATTGG-CTGTGCCAGAAGATGGGTAACTCCCAA-CTCCCCT-ACGAgtggaa
gi|8 : GAATATTTTTT-AATATTGTGCAAATGCCAA---------------------TGCACATTTAGAA-AGATGCTAACACTATAT-CTTATAAAAATAT-CATCATAGT-AT-GCTCAAACATATC--TT-TGTATT--TAGAAGCAT-AAAAAATG-A-G--AGGGACT-CATAAATTAAA--TCGGGCCA-ATATCAGGGAT-GCAGTGTTGTAT-C---TAGAGGGG-ACAAT-AAATTCTACCTTCACCAACCTC--AGCTTCAACAA-TATT-A---------ATTC-TGTTGTTGT---CC-TTTTAGGATCTTTGACACCCCCCCCA-------------ACgtg
gi|8 : CACCCCCCCCAACCTC--AGCTTCAACAA-TATT-AActcagcttcaacaatattaatt
gi|9 : gaatattttttaatattgtgcaaatgccaatgcacatttagaaagatgctaacactatatcttataaaaatatcatcatagtatgctcaaacatatctttgtatttagaagcataaaaaatgagagggactcataaattaaatcgggccaatatcagggatgcagtgttgtatctagaggggacaataaattctaccttcaccaacctcagcttcaacaatattaattctgttgttgtccttttaggatctttgaAACAATATATATTTTTAAAAATAT-AATCATATT-AT-GCACACTTATAATCA-T-TGTGTT--TAAAAGTAT-TAAAAAAA-ATGAAAGGGGCT-CATAACACAAA--TCAGGtt
blockSeqs : T . . . A A T . . . T . C T AAGTTGT TTC C . C A A C A T ATT . A AC G A . C AT T T C A CC TT C . T T . A A . A A TACAT CT C G C . C AT A T A TTGCC ATGGCTT GG G TAG C T CGCA CTAGTA T TC ATATTCTCTGCT G TT A . C A TT . T C C . AACAAC . A CAG T A C A A G A T A A A . C C AATC G AA A A C TGAA A GT . C A TAT GA A T A AA A A T TAAAT TT C CTTCCCATCCCATAAGAGTGTTATTAGTCGTATTCTCCTT A A TT TCG CT G TGG AT C G GG TT T A A TT AAAAATAAAACCATTTATAACCTTTAAT T AGG G C CATACACAAA TTA GATCTAAATG A G T AATTCTTAAATCTACTTGTAGGTT AA G C . A C A T G TATGGC G TAAT G T . . CCA AGAA A AAAACA A . T A T G . G G T T . C A . A . A . AT GA G C A T TGTATACA AGTAGTA . CA A . . A G . C CGTAGATATATATTGCATAC TT CT AGGCCCCTCCCTT . GC T . CTT . . . C . G ATTGTTTCA T T T G T A G T G GGGGG GG GG T ACTATGGTT G TAGCTA T G . G T TTT G AT T T GCC T A GCTACATATTT T AAGAGAC AGTCGA TA GGCT A TCTCGATT G G G C CGA T CTTGAATGGGGC C G A AA A G T T T TC A G T T T GC A TC C C T T . TC C TTC CC T . AGGAA A . CCT A T CACCATCGGTTGT CGT T T T TT C C A . C AGA G C . G
blockSeqs : . . GTC . . A . . . G C TA . . . G . . A T . . . G T TC . . T . . . . . . . A T C . . . . A A T T GCCG ATGGCCT AG G . . . CGC C . . . . TT A . . . T . T . C . AGA . T AG T . C T G . T A A . A . . . AATC . . . T . TG . . . . . . A A A A . . . . TC TC A CCGTGTAGTTTTCCGTTC C T T . . . TG . . . . . . . . . GCAAAATAACAT C . . C ATACACAA C ATATG . . A TTATTGAGTTAAA C C . . . . . T G T . T A C . . C AAT . CAT T . TGTTTTT . C . . CTG . . . T . G . GTGCA . C . . A TT . . C . . . A TG . AAAG CCA . . T TG . T A C T A CTACCAG . . . AC . . . . T . A G . T T T . . C C C T . C . T . . . . . . CC A . T . T T A T . . . . . GG . . . G
blockSeqs : . . T T AAAGCCT AA G . . . AC . . . . . TT A . . . T . . . . . . . A A . . . A A . T A A . A . . . CAC . . . T . TT . . . . . . A . A A . . . . T TC A CCCAGTG . T A . . CGT T . CC . C . . CT . . . . A T . . CA . . A C . G G . G A AC . . . A . . . . T . . G . . . C . . . . A . . . . T . . . . . . T . . T . . . C T . . . . . GA . . . .
blockSeqs : . . . ATAGCTT . . . . . A . . . . . G . . . . . . . . . . T A A . A . . . ATC . . . T . G . . . . . . . . A . . . . T . . T . . TG . C . . . T . . G . . T C GG . . . A . . . . A T . . . . . GA .
blockSeqs : ATACTTT . . . . . C . . . . . . . . . . . . . . . . . . . . . A . G . C . . . . T . . . .
blockSeqs : . . . . .
blockSeqCons : ******** C****** ****** A** AATC TG** A* T**** T** TN*********** **** C***** C******* CTGC********** T* GA*
originalCons : GTGTAATTCANTACTATTTAATAAAAACACAANTATTNAATACAGATAGTGACTTAGTATTTCCAGCCAATTTAATAGAGAGCATTCCTGTGGGGTCACAATG-GAA-------CTGAA-T-C-CAACAC--AAAACAAGATACATA-AGTCAATATTGGACAAATACATAT--T-TA-CATCAA-TTGATCAATGTATAGT--TNTTGAAATTATA-AAAATTCTT-GATTCCAAAA-TAATGTNTCTGCN--CTCATCAGTGTTAAAATAACTC--TGCAATTCTTTTGT-CATGTCCTCTCTTCTTTTACATACTT-GGGAACTTGCACAGATACTAAAA-TCTCCAACAAAGTAT--ACA-TGTTGCAAGGT-TCACATTGGTAAAATACCAAA-CAGCCTTGGTATATTTTTTTCTATTGTAGTAGAATATTGTTTT---T----GGTAAAAGGGAATAGCCTTGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GA-TGATTCG--C--AGTATGC-----CTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTTAAAAT-GCTG-CTGTAC-CAAGTA-TTATC-AAATGA-ATCTGTAAA--AAA--AACAAGAATATTTTTT-AATATTGTGCAAATGCCAAATC--GTATTGG-ACAAAGCATGCACATTTNGAA-AGATACTAACAATATAT-TTTTTAAAAATAT-CATCATATT-AT-GCACAAACATAACCATT-TGTATT--TAGAAGCAT-AAAAAANG-ATG--AGGGACT-CATAAATTAAA--TCGGGCCA-ATATCAGGGAT-GCAGTGCTGGAT-C---TAGAGGGG-ACAATAAAATTCCACCTTCACCAACCTC--AGCTTCAACAT-TATT-AAAAATGGATATTC-TTTTGTTGT---TCATTTTAGGATCTTCGACACCCCCCCCC-------------ACG----AGTTTT-----CCGT---T---TCCC---T---TATACNTTTT-ATT---GC--AAAAATAGGTTTTG-TTTTG-AAACAA--TAATTCCTGAACT-CAG--TCTTGCT--CTAATATCTAAA-TT-AT--GAAG-------------ANAA-TAAA--------T-AAC-----AT---TANATAT---TCTATTGATGCA-ATACACAA-TGTTAC--AAATC-AT----ATG---AACATAG-AAT-AATNCTA---TT-TTGAGT-------TAGG--AAAAT--TNTTGCATTCTTTT--AAAATCTTG-CAGTCAT-TGAATATGTGCGTTTGTGTTGTGGCTATGTGCAGG---TAAGACACGATA-TCTC-----AGACC-AAAACCCTGCA--AA-CATG-TATGTAAAACAAATTGNCTGTAAATAGTTTTGATAAAGTGCTNCAGATATGCGCTCCTAAATNGATTGTTNTGNAAATACTTTAGATCATGCCTNTGGCAAAATAATGTATAAAAGTCGATCTGATCGTAATTCAAAACTTACCANACTATGTTGTACATATGATTTCTTTNNGCATACGAGNCCTGATGCATNCACCAATNAGACACTGTATACATGTACAGTAGTACACATCCANNTCTTGTAACAAAATTTAGAGTCATTACACACGACATTTATTTATCNTCACAGGCACCAGAAGTATGTANCAGGGAGTTTTCTATACACGT-----------------ACATAATT-GTACC--CCCCCCCCCCCG-----------TTTTT----CAAC-C----AAATACACA-TTTTT-TGGAATCCCCGTCATCTCAAAACTTACAGCAGAAA--C-T-GCCCCG-CAAAG-CG-ACTTNA-TGAAGGTGAATGGTGGGGAAATCATTGTTTCATNANTCTACNTTTCATTNGGNTGNANGGNTGCGTGTGTTTGGGGNGNNGGGNNGGTANGGACTATGG-T-GCGTGTGTTGGGGAGGGGGGTA-GCGC-GTAAGAC-GTGCTATTCT-CGG-TNAGAAC---TTTATGCATGTACTA--TTGACTAACTAC-ACACTG---TCACAGTTAAATT-ACATTCAAT-G----------ATT-GATAAAACAA---ANTTA---C-A-TTTGAAA--CGTGT----CGATCTGTTTTTCTCTC---CG---TTGCA-TGGGGCCT--NCANTGGC-T---AC-GG---C-TA-CA-GCAACGTAAACAATTAT-TTT-T-CTGT-GACTTTTGTTCT--GAAAATGGGGTATAT-CTCGCTCCTACTA-CCCTTTCTGG---GT--ACCGTGTGTCACTTTTACATTT--CCCCATGCGCA-GTT-CTTCAC-AATTT--T--AAAGC--GA-ATTCA-AA-----GCAATCTCGTT-AAAACATCTGCATCT-AAACA-CC-CAACCA-TGTG------------TTTTGA---CGGAGGTCATGGCGGAAAATTCTTCCCG-CGAT-TCTG-ATTGG-CTGTG-CGGAAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
finalCons : GTGTAATTCANTACTATTTAATAAAAACACAANTATTNAATACAGATAGTGACTTAGTATTTCCAGCCAATTTAATAGAGAGCATTCCTGTGGGGTCACAATG-GAA-------CTGAA-T-C-CAACAC--AAAACAAGATACATA-AGTCAATATTGGACAAATACATAT--T-TA-CATCAA-TTGATCAATGTATAGT--TNTTGAAATTATA-AAAATTCTT-GATTCCAAAA-TAATGTNTCTGCN--CTCATCAGTGTTAAAATAACTC--TGCAATTCTTTTGT-CATGTCCTCTCTTCTTTTACATACTT-GGGAACTTGCACAGATACTAAAA-TCTCCAACAAAGTAT--ACA-TGTTGCAAGGT-TCACATTGGTAAAATACCAAA-CAGCCTTGGTATATTTTTTTCTATTGTAGTAGAATATTGTTTT--------GGTAAAAGGGAATAGCCTTGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GA-TGATTC------AGTATG------CTCTG-T--TGATGAAGA------------GT-GTGGTTCTTTGACTTAAAAT-GCTG-CTGTAC-CAAGTA-TTATC-AAATGA-ATCTGTAAA--AAA--AACAAGAATATTTTTT-AATATTGTGCAAATGCCAAATCA--TATTGG-ACAAAGCATGCACATTTNGAA-AGATACTAACAATATAT-TTTTTAAAAATAT-CATCATATT-AT-GCACAAACATAATCATT-TGTATT--TAGAAGCAT-AAAAAANG-ATG--AGGGACT-CATAAATTAAA--TCGGGCCA-ATATCAGGGAT-GCAGTGCTGGAT-C---TAGAGGGGA-CAATAAAATTCCACCTTCACCAACCTC--AGCTTCAACAT-TATT-AAAAATGGATATTC-TTTTGTTGT----CATTTTAGGATCTTCGACACCCCCCCCC-------------ACG----AGTTTT-----CCGT---T---TCCC---T---TATACNTTTT-ATT---GC--AAAAATAGGTTTTG-TTTTG-AAACAA--TAATTCCTGAACT-CAG--TCTTGCT--CTAATATCTAAA-TT-AT--GAAG-------------ANAA-TAAA--------T-AAC-----AT---TANATAT---TCTATTGATGCA-ATACACAA-TGTTAC--AAATC-AT----ATG---AACATAG-AAT-AATNCTA---TT-TTGAGT-------TAGG--AAAAT--TNTTGCATTCTTTT--AAAATCTTG-CAGTCAT-TGAATATGTGCGTTTGTGTTGTGGCTATGTGCAGG---TAAGACACGATA-TCTC-----AGACC-AAAACCCTGCA--AA-CATG-TATGTAAAACAAATTGNCTGTAAATAGTTTTGATAAAGTGCTNCAGATATGCGCTCCTAAATNGATTGTTNTGNAAATACTTTAGATCATGCCTNTGGCAAAATAATGTATAAAAGTCGATCTGATCGTAATTCAAAACTTACCANACTATGTTGTACATATGATTTCTTTNNGCATACGAGNCCTGATGCATNCACCAATNAGACACTGTATACATGTACAGTAGTACACATCCANNTCTTGTAACAAAATTTAGAGTCATTACACACGACATTTATTTATCNTCACAGGCACCAGAAGTATGTANCAGGGAGTTTTCTATACACGT-----------------ACATAAT--GTACC--CCCCCCCCCCTN-----------TTTTT----CAACC-----AAATACACA-TTTTT-TGGAATCCCCGTCATCTCAAAACTTACAGCAGAAA--C-T-GCCCCG-CAAAG-CG-ACTTNA-TGAAGGTGAATGGTGGGGAAATCATTGTTTCATNANTCTACNTTTCATTNGGNTGNANGGNTGCGTGTGTTTGGGGNGNNGGGNNGGTANGGACTATGG-T-GCGTGTGTTGGGGAGGGGGGTA-GCGC-GTAAGAC-GTGCTATTCT-CGG-TNAGAAC---TTTATGCATGTACTA--TTGACTAACTAC-ACACTG---TCACAGTTAAATT-ACATTCAAT-G----------ATT-GATAAAACAA---ANTTA---C-A-TTTGAAA--CGTGT----CGATCTGTTTTTCTCTCC-------TTGCA-TGGGGCCT--NCANTGGCTGC----------C-TA-CA-GCAACGTAAACAATTAT-TTT-T-CTGT-GACTTTTGTTCT--GAAAATGGGGTATAT-CTCGCTCCTACTA-CCCTTTCTGG---GT--ACCGTGTGTCACTTTTACATTT--CCCCATGCGCA-GTT-CTTCAC-AATTT--T--AAAGC--GA-ATTCA-AA-----GCAATCTCGTT-AAAACATCTGCATCT-AAACA-CC-CAACCA-TGTG------------TTTTGA---CGGAGGTCATGGCGGAAAATTCT-CCCG-CGAT-TCTG-ATTGG-CTGTG-CGA-AGAT-GGTAACT-CCAC-CTCCCCTGACGAC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 1 1 2222 1 1 11 1 1 2222 1 1 4444444 22222 11 11 1 11 1 2222 1 33 11 111 1 1 1 2222 22222 1 1 1 1 222 1 22 1 11 44444 11 222 111 222 111111 111111 333333333333 11 1 11 222222 1111 1 1 1111 11 1 111 11 1 1111 66666666666666666666666666666666666666666666666666666 11 111 11 1 22 11 1 1 11 11 22 2222 11111111111111111111111111111111111111111111 222 11111111 333 4444444444444 22 1 0000000000000000000000000 33 222 1 1 1111111 3333 1 1 33333 111 33333 1 333333 11 1 1 1 2222 1 333333 1 11 11 1 11 11 11 1 22222222 3333333 1 1 22222 11 1 1 2222222222222222 111 333333333333333333 111111 1 1 1 1 333333333 1 22222 3333333333 222222222 1 11 1 1 222222 11 1 1 222 1 555555555555 1 1111111 2222222 11 1111 11 444444444 111 444444444444444 111111 11 1 11 222 11 111 1 11 1 11111 11 1 1 22222 1 1 1111 1 5555555555555 111 1 11 1 1
lowQualScore : 1 5 5 4444 1 1 5 5 88 5 5 3333 5 3 3333333 11111 6 88 44 7 7 3 44 2 2222 3 7 44 6 7 88 1 333 3 3 3 1 6666 88888 6 3 7 2 3 7 7 3 7 7 555 3 00 6 6 6 3 6 44 3 5 8 55555 33 000 66 2 1 111 6 6 000 999999 6 999999 6 99 444444444444 5 00 3 6 6 6 88 8 3 0 2 33 777777 0 8 0 6 7777 3 0 2 1 1 8 0 1 7 3 6 3 6 6 3 44 6 6 99 6 1 6 4444 6 0 11 0 8 8 444 66 0 9 1 77 5 5 6 4444 6 88 5 44444444444444444444444444444444444444444444444444444 3 1 11 777 33 3 00 88 2 3 88 88 00 2222 77777777777777777777777777777777777777777777 1 333 6 6 66666666 000 4444444444444 55 3 1 7777777777777777777777777 11 1 6 555 3 3 7 0 6 2222222 6 0000 2 3 3 33333 555 88888 3 000000 1 88 5 5 1 5 3333 1 5 1 1 000000 5 66 88 5 88 1 88 22 88 1 1 5 1 44444444 2222222 5 22 5 66666 88 1 5 5 1 6 8 9999999999999999 444 222222222222222222 99 6 6 444444 0 0 0 1 3 6 888888888 1 1 1 1 1 1 1 1 5 33333 22 22 1 7777777777 6 666666666 3 33 3 3 1 555555 6 88 2 3 333 0 3 000000000000 0 9999999 8888888 33 7777 1 11 555555555 6 8 5 3 5 222 1 888888888888888 8 888888 0 8 8 8 8 3 33 3 2 0 3 3 00 777 33 2 2 555 3 0 66 0 88888 33 0 0 55555 0 0 0 6666 3 0 4444444444444 777 3 3 1 0 6 8 8 8 8 99 8 0 0 2
lowQualScore : . . . .... . . . . .. . . .... . . ....... ..... . .. .. . . . .. . .... . . .. . . .. . ... . . . . .... ..... . . . . . . . . . . ... . .. . . . . . .. . . . ..... .. ... .. . . ... . . ... ...... . ...... . .. ............ . .. . . . . .. . . . . .. ...... . . . . .... . . . . . . . . . . . . . . . .. . . .. . . . .... . . .. . . . ... .. . . . .. . . . .... . .. . ..................................................... . . .. ... .. . .. .. . . .. .. .. .... ............................................ . ... . . ........ ... ............. .. . . ......................... .. . . ... . . . . . ....... . .... . . . ..... ... ..... . ...... . .. . . . . .... . . . . ...... . .. .. . .. . .. .. .. . . . . ........ ....... . .. . ..... .. . . . . . . ................ ... .................. .. . . ...... . . . . . . ......... . . . . . . . . . ..... .. .. . .......... . ......... . .. . . . ...... . .. . . ... . . ............ . ....... ....... .. .... . .. ......... . . . . . ... . ............... . ...... . . . . . . .. . . . . . .. ... .. . . ... . . .. . ..... .. . . ..... . . . .... . . ............. ... . . . . . . . . . .. . . . .
lowQualScore : 0 5 5 0000 0 0 5 5 00 0 5 0000 0 3 3333333 00000 7 33 00 3 3 3 00 0 7777 3 3 00 7 3 33 0 777 3 3 3 0 0000 00000 7 3 3 0 3 3 3 3 3 3 777 3 77 7 7 7 3 7 77 2 6 0 00000 00 000 77 5 0 777 7 7 888 222222 7 222222 7 22 222222222222 7 77 2 7 7 7 88 0 2 0 5 88 222222 8 0 8 0 8888 5 0 5 0 2 0 8 4 8 5 7 2 7 7 3 22 7 7 22 7 0 7 8888 7 8 00 0 0 0 000 88 6 0 4 99 7 7 7 2222 7 33 6 11111111111111111111111111111111111111111111111111111 0 0 22 555 88 3 77 33 0 3 33 33 77 7777 33333333333333333333333333333333333333333333 0 333 7 7 77777777 333 0000000000000 33 3 0 3333333333333333333333333 77 0 7 777 3 3 3 7 7 3333333 7 7777 0 7 3 33333 333 00000 3 000000 0 00 5 5 0 0 0000 0 0 0 0 000000 0 55 55 5 00 0 00 00 00 0 0 5 0 00000000 5555555 5 00 5 55555 00 0 0 5 0 5 0 4444444444444444 000 000000000000000000 22 7 7 888888 0 0 0 0 3 7 555555555 0 0 0 0 0 0 0 0 0 55555 00 00 0 3333333333 7 333333333 3 33 3 3 0 777777 7 33 0 3 333 0 2 000000000000 0 2222222 5555555 88 0000 4 00 444444444 0 0 0 2 0 000 0 222222222222222 0 666666 8 0 0 0 0 2 88 2 5 0 2 2 22 555 88 5 5 000 2 0 55 0 55555 88 0 0 00000 2 0 0 5555 2 0 5555555555555 555 2 2 0 8 0 0 0 0 0 00 0 0 0 5
consensus : GTGTAATTCANTACTATTTAATAAAAACACAANTATTNAATACAGATAGTGACTTAGTATTTCCAGCCAATTTAATAGAGAGCATTCCTGTGGGGTCACAATG-GAA-------CTGAA-T-C-CAACAC--AAAACAAGATACATA-AGTCAATATTGGACAAATACATAT--T-TA-CATCAA-TTGATCAATGTATAGT--TNTTGAAATTATA-AAAATTCTT-GATTCCAAAA-TAATGTNTCTGCN--CTCATCAGTGTTAAAATAACTC--TGCAATTCTTTTGT-CATGTCCTCTCTTCTTTTACATACTT-GGGAACTTGCACAGATACTAAAA-TCTCCAACAAAGTAT--ACAT-GTTGCAAGGT-TCACATTGGTAAAATACCAAA-CAGCCTTGGTATATTTTTTTCTATTGTAGTAGAATATTGTT-TTT----GGTAAAAGGGAATAGCCTTGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GAT-GATTC---AGT------ATGC-T------CTG-TT--GATGAAGA------------GT-GTGGTTCTTTGACTTAAAAT-GCTG-CTGTAC-CAAGTA-TTATC-AAATGA-ATCTGTAAA--AAA--AACAAGAATATTTTTT-AATATTGTGCAAATGCCAAATC--A-TATTGG-ACAAAGCATGCACATTTNGAA-AGATACTAACAATATAT-TTTTTAAAAATAT-CATCATATT-AT-GCACAAACATAATCA-TT-TGTATT--TAGAAGCAT-AAAAAANG-ATG--AGGGACT-CATAAATTAAA--TCGGGCCA-ATATCAGGGAT-GCAGTGCTGGAT-C---TAGAGGGG-ACAATAAAATTCCACCTTCACCAACCTC--AGCTTCAACAT-TATT-AAAAATGGATATTC-TTTTGTT----G-TCATTTTAGGATCTTCGACACCCCCCCCC-------------ACG----AGTTTT-----CCGT---T---TCCC---T---TATACNTTTT-ATT---GC--AAAAATAGGTTTT-GTTTT-GAAACAA--TAATTCCTGAACT-CA--GTCTTGC--TCTAATATCT-AAATT-A--TGAAG-------------ANAATAA--------AT-AAC-----AT---TANATAT---TCTATTGATGCA-ATACAC-AATGTTAC--AAATC-AT----ATG---AACATAG-AAT-AATNCTA---TT-TTGAGT-------TAGG--AAAAT--TNTTGCATTCTTTT--AAAATCTTG-CAGTCAT-TGAATATGTGCGTTTGTGTTGTGGCTATGTGCAGG---TAAGACACGATA-TCTC-----AGACC-AAAACCCTGCA--AA-CATG-TATGTAAAACAAATTGNCTGTAAATAGTTTTGATAAAGTGCTNCAGATATGCGCTCCTAAATNGATTGTTNTGNAAATACTTTAGATCATGCCTNTGGCAAAATAATGTATAAAAGTCGATCTGATCGTAATTCAAAACTTACCANACTATGTTGTACATATGATTTCTTTNNGCATACGAGNCCTGATGCATNCACCAATNAGACACTGTATACATGTACAGTAGTACACATCCANNTCTTGTAACAAAATTTAGAGTCATTACACACGACATTTATTTATCNTCACAGGCACCAGAAGTATGTANCAGGGAGTTTTCTATACACGT-ACATA-ATT-GTA--------CCCC---CCCCCCCC-------TTTT-------TTTCAAC-CAAATACACA-TTTTT-TGGAATCCCCGTCATCTCAAAACTTACAGCAGAAA--C-T-GCCCCG-CAAAG-CG-ACTTNA-TGAAGGTGAATGGTGGGGAAATCATTGTTTCATNANTCTACNTTTCATTNGGNTGNANGGNTGCGTGTGTTTGGGGNGNNGGGNNGGTANGGACTATGG-T-GCGTGTGTTGGGGAGGGGGGTA-GCGC-GTAAGAC-GTGCTATTCT-CGG-TNAGAAC---TTTATGCATGTACTA--TTGACTAACTAC-ACACTG---TCACAGTTAAATT-ACATTCAAT-G----------ATT-GATAAAACAA---ANTTA---C-A-TTTGAAA--CGTGT----CGATCTGTTTTTCT--CTC-T-------TTGCA-TGGGGCCT--NCANTGGC-T--------AC--CTAC-AGCAA----CGTAAACAATTAT-TTT-T-CTGT-GACTTTTGTTCT--GAAAATGGGGTATAT-CTCGCTCCTACTA-CCCTTTCTGG---GT--ACCGTGTGTCACTTTTACATTT--CCCCATGCGCA-GTT-CTTCAC-AATTT--T--AAAGC--GA-ATTCA-AA-----GCAATCTCGTT-AAAACATCTGCATCT-AAACA-CC-CAACCA-TGTG------------TTTTGA---CGGAGGTCATGGCGGAAAATTCTTCCCG-CGAT-TCTG-ATTGG-CTGTGC--GAAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
Reference ( family-318 ) : GTGTAATTCANTACTATTTAATAAAAACACAANTATTNAATACAGATAGTGACTTAGTATTTCCAGCCAATTTAATAGAGAGCATTCCTGTGGGGTCACAATG-GAA-------CTGAA-T-C-CAACAC--AAAACAAGATACATA-AGTCAATATTGGACAAATACATAT--T-TA-CATCAA-TTGATCAATGTATAGT--TNTTGAAATTATA-AAAATTCTT-GATTCCAAAA-TAATGTNTCTGCN--CTCATCAGTGTTAAAATAACTC--TGCAATTCTTTTGT-CATGTCCTCTCTTCTTTTACATACTT-GGGAACTTGCACAGATACTAAAA-TCTCCAACAAAGTAT--ACAT-GTTGCAAGGT-TCACATTGGTAAAATACCAAA-CAGCCTTGGTATATTTTTTTCTATTGTAGTAGAATATTGTT-TT-----GGTAAAAGGGAATAGCCTTGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GAT-GATTC---AGT------ATGC-T------CTG-TT--GATGAAGA------------GT-GTGGTTCTTTGACTTAAAAT-GCTG-CTGTAC-CAAGTA-TTATC-AAATGA-ATCTGTAAA--AAA--AACAAGAATATTTTTT-AATATTGTGCAAATGCCAAATC--A-TATTGG-ACAAAGCATGCACATTTNGAA-AGATACTAACAATATAT-TTTTTAAAAATAT-CATCATATT-AT-GCACAAACATAATCA-TT-TGTATT--TAGAAGCAT-AAAAAANG-ATG--AGGGACT-CATAAATTAAA--TCGGGCCA-ATATCAGGGAT-GCAGTGCTGGAT-C---TAGAGGGG-ACAATAAAATTCCACCTTCACCAACCTC--AGCTTCAACAT-TATT-AAAAATGGATATTC-TTTTGTT----G-TCATTTTAGGATCTTCGACACCCCCCCCC-------------ACG----AGTTTT-----CCGT---T---TCCC---T---TATACNTTTT-ATT---GC--AAAAATAGGTTTT-GTTTT-GAAACAA--TAATTCCTGAACT-CA--GTCTTGC--TCTAATATCT-AAATT-A--TGAAG-------------ANAATAA--------AT-AAC-----AT---TANATAT---TCTATTGATGCA-ATACAC-AATGTTAC--AAATC-AT----ATG---AACATAG-AAT-AATNCTA---TT-TTGAGT-------TAGG--AAAAT--TNTTGCATTCTTTT--AAAATCTTG-CAGTCAT-TGAATATGTGCGTTTGTGTTGTGGCTATGTGCAGG---TAAGACACGATA-TCTC-----AGACC-AAAACCCTGCA--AA-CATG-TATGTAAAACAAATTGNCTGTAAATAGTTTTGATAAAGTGCTNCAGATATGCGCTCCTAAATNGATTGTTNTGNAAATACTTTAGATCATGCCTNTGGCAAAATAATGTATAAAAGTCGATCTGATCGTAATTCAAAACTTACCANACTATGTTGTACATATGATTTCTTTNNGCATACGAGNCCTGATGCATNCACCAATNAGACACTGTATACATGTACAGTAGTACACATCCANNTCTTGTAACAAAATTTAGAGTCATTACACACGACATTTATTTATCNTCACAGGCACCAGAAGTATGTANCAGGGAGTTTTCTATACACGT-ACATA-AT--GTA--------CCCC---CCCCCCCC-------TNTT-------TTTCAAC-CAAATACACA-TTTTT-TGGAATCCCCGTCATCTCAAAACTTACAGCAGAAA--C-T-GCCCCG-CAAAG-CG-ACTTNA-TGAAGGTGAATGGTGGGGAAATCATTGTTTCATNANTCTACNTTTCATTNGGNTGNANGGNTGCGTGTGTTTGGGGNGNNGGGNNGGTANGGACTATGG-T-GCGTGTGTTGGGGAGGGGGGTA-GCGC-GTAAGAC-GTGCTATTCT-CGG-TNAGAAC---TTTATGCATGTACTA--TTGACTAACTAC-ACACTG---TCACAGTTAAATT-ACATTCAAT-G----------ATT-GATAAAACAA---ANTTA---C-A-TTTGAAA--CGTGT----CGATCTGTTTTTCT--CTC-C-------TTGCA-TGGGGCCT--NCANTGGC-T--------GC--CTAC-AGCAA----CGTAAACAATTAT-TTT-T-CTGT-GACTTTTGTTCT--GAAAATGGGGTATAT-CTCGCTCCTACTA-CCCTTTCTGG---GT--ACCGTGTGTCACTTTTACATTT--CCCCATGCGCA-GTT-CTTCAC-AATTT--T--AAAGC--GA-ATTCA-AA-----GCAATCTCGTT-AAAACATCTGCATCT-AAACA-CC-CAACCA-TGTG------------TTTTGA---CGGAGGTCATGGCGGAAAATTC-TCCCG-CGAT-TCTG-ATTGG-CTGTGC--GAAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
gi|1 : GTGTAATTCAGTATTATTTAATAAAAACACAATTATTTAA-ACAGATAGTGACTTAGTATTTCCAGCCAATTTAA-AGAGAGCATTC-TGTGGGGTCACAATG-GAA-------CTGAA-T-CGTAACACTCAAGACAAGATACATA-AGTCAATATAGGACAAAGA-ATAT--T-TATCATCAAATTGATCAAT-TGCAGTAGTGTTGAAATTATA-AAAAATTCT-GATTCCAAAA-TAATGTCTCTGCATGCTCATCAGTGTTAAAATAACTCAGTGCAATTCTTTTGTTCATGTCC-CTCTTCTTTTACATACTTTGGGAACTTGCACAAATACAAAAAATCTCCAACAAAGTATCAACAT-GTTGCAAGGC--CA-ATTGGTAAAATATCAAATCAGCCTTGGTAT-TTTTTTTCTATTGTAGTAGAATGTTGTT-TTT----GGTAAAAAGGAGTAGC--TGTTGATAGGGTTGATCTAATAACTGGAGTTG---AT-GAT-GATTC---AGTCTGAGTATGCCT------CTG-TT--GATGAAGA------------GT-GTGGTTCTTTGACTAAAAATCGCTG-CTGTAC-CAAGTA-TTATCGAAATGA-ATCTGTAAACAAAG--AACAAGAATATTTTTTTAATAT-ATGCAAATACCAAATC--A-TAATGG-ACAAAGCATGCACATTATGTA-AGA-ACAAACAATTTTT-TTTTTAA---TATGCATCATATT-ATTGCACAAACATAACCA-TT-TGTATT--TAGAGGCAT-AAAAAAAA-ATT--AGGGACT-CATAAATGAAT--TTGGGTCATATATCAGGGAT-GCAGT-CTGGAT-C---AAGAGGGACACAATACAGTTTCCCCTTCACCAACCTC--ATCTTCAATAT-CATT-AAAAATGGATCTTC-TTTTGTT----GTTCATTTCTAGATCTTCGACAACCCACCCA-------------ATGGTATAGTTTT-----CCAT---TATATCCCGGATTTATATACATTTC-ATT---GC--AAAAATAGGCTTT-GTTT---GAACAA--TAATTTCTGAACT-CA--GTCTTGC--TCTAATATCT-AAATT-A--TGAAGCTTATTGTGTACAATAATAA--------ATGAAC-----ATAGATAAATAT---TCTATTGTTG-A-GT------TTCTTA---AAATC--T----TTGACCAACATTGTAAT-AGTGCTA---CT--------------------GAAAC--TTTTGCATTCTTTTTAAAAATCTTG-CAGTCAT-TGAA-ATGTGCATGTGT-TTGTGGCTCTGTGCAGG----AA------ATAGTTTCAAAAGAGATC-AAAACCCTGCA------ATA-TATGT------AATTGTTTGTAAA-AGTTTTGAT-AAGTACTACA-ATATGCGCTCCTAAATTGATT-TTATGAAAATACTTTAGAT-ATGCCTTTGGCAAAATAATGT-TAAAAGTCGATCTGATCATAATTCAAAACTTACCATACTATGTTGTACATATGATTTCTTTTAGCATAC--ATCCTGATGCATACACT-ATAAGACAC---AT---TGTAT-------CACATCCAGCTCTTGT-ACAAAATTTAGAGTCATTACACACGACATTTATTTATTTTCACA-GCATCAGAAGTATGTAATAGGGAGTTTTCTATACG-GTCACATA-GCTAGTA--------CACC---CCCCCCCC-------CTTTAAAAAAACCCCAA---AAATACACA-TTTTTATGGAATCCCCGTCATCTCAAAACTTACAGCAGGAAATC-T-GCCCCGCCAAAGCCGCACTTAACTGAAGGTGAAT-GTCGGGAAATC---------TAAGTCTACGTTTCATTTAGGTGCATAGGTGCGT-TGTTT----TGTTGGGTCGGTAAGG-------------------GGGGGGGGGGGTATGTGCAGTAAGAC-GTGCTATTCTCCAG-TCAGAACACACGTATGCATGTACTA--TTATCTAA-TAC-AAACTG---TCACAGTTAAATT-ACATTC-AT-G----------ATT-GATAAAACAA---ATTTA---C-ATTTTGAAA--CGTGT----CGATCTGTTTTTCT--CTCGT-------TTGAA-T-GGGCCT--ACACTGGCTT--------ACAGCTAC-AGCAA----CGTAAACAATTAT-ATT-T-CTGT-GAC-TTTGTTCT--GAAAAT-GGGTATAT-CTCGCTCCTACTA-AGCCTTCTGGTCAAT--ACCGTGTGTCACTTTTACATTTTACCCCATGCGCAGGTT-TTTCAC-AATTCAAT--AATGC--GA-ATTCATAA-----GCAATCTCGTT-AAAACATCTGCATCTAAAACAGCC-CAACCA-TGTG-------------TTTGA---CGGAGGTCATGGCGGAAAATTCTTCCCG-CGAT-TCTG-ATTGGTCGGTGCG-GAAGAT--GTAACT-CCTCACTCCCCTGACGAC
gi|10 : TTTCTATTGTAGTAGA------------------TAAAGGG--ATGGC-TTGTTGATGGGGTTGATCTGATAACTGGAGTTG---TG-GAT-GATTA---AGT------ATAC-TAGTACTCTA-TTCTGCTG-----------------T-GTAATTCTTTGAC-----GT-GCTG-CTGTAC-CAAGTA-TTATC-A
gi|10 : TT-ATCATTGTGCAAATGCCAAATC--A-TAttgtgcaaatgccaaatcataaac
gi|11 : tttctattgtagtagataaagggatggcttgttgatggggttgatctgataactggagttgtggatgattaagtatactagtactctattctgctgtgtaattctttgacgtgctgctgtaccaagtaTATTGTTATT-----GGTATAAGGGA-TGGCCT----------GTT-ATCTGGCAACTGGAGTTGTAGAT-GAT-GATTC---AGT------ATGC-T------CTG-TT--GTTGAAGAATATTCTCTGCTGC-ATAGTTCTTTGACG-AAAAT-GCCG-CTGTAC-TAAaac
gi|12 : AAATT-ACATTCAATTG----------ATT-GATAAAACAA---AGTTA---C-A-TTTGAAA--CGTGT----CGATCTGTTATTGTAACT--G-------TAGCA-TGGGGCCCCGACATGGG-----------AC--CTAC-AGC-A----CGTAAACAATTAT-TTT-T-CTGT-G
gi|13 : TATACACAT-ACATA-AT--GTAACCCCCTCCCCCAGGCCCCTCCC-------TTTT-------TTTCAAC-CAAATACACATTTTTT-TGGAATCTC
gi|14 : aggttatcgtaaatacgttacgtagatagatTCACCAACCTC--AGCTTCAACAT-TATT-AAAAGTGGATATTC-TAATGTT----G-TCATTTTCGGA---TCGAC-CCCCCCCCC-------------CCGTGT-AGTTTT-----CCGT---T---C------------TACATTTT-ATT---GC--AA
gi|15 : AAC-CAAATACACA-TTTTT-TGGAATCCCCGTAATCTCAAAACTTAAAGCAGAAA--CTT-GCCCCG-CAAAG-CG-ACTTCA-TGAAGGTGAATGGTGGGGAAATC
gi|16 : T-ACATATAA--GTA--------CCCC---TCCCCCCT-------CCTT-------TTTTA--------------TTTTT-GGGAATCCCCGTCATCTCAAAACTCACAGCAGAAA--C-TGGCCCCG-CAAAG-CG-ACTTta
gi|17 : gatcttaA-AGATACAAACAAT-T-T-TTTTTAAACATTT-CATCATATT-AT-GCACAAACATAATCA-TTGTATATTAATAGAAGCATAAAAAAAAA-ATG--AGGGACT-CA
gi|18 : gtTGCATAC-ACATA-AT--GTG--------CCCT---CCCCCCCCCCTGTTTTTTT-------TTTCAAC-CAAACACACA-TTTTT-TGGA
gi|19 : aggttatcgtatacgacacgtagatatatatAAAAGGGAA-AGCCT-GTTGATAGGGTTGATCTAATAACTGAAGTTG---AT-GAT-GATAC---AGT------ATGC-T------CTG-TT--GATGAATA------------GT-GTGGTTC
gi|2 : GTATAATTCATT-CTATTTA-TAAA----CAAATATTAAATACAG-TAG--ACTTAGTATTTC-AGCCAATTTAATAAA----ATTCCTATGGGGTCACAATG-GAA-------CTGAA-TTC-CAACAC--AAA-CAAGAT-CATA-AGTCAATATTG-ACAAATATATATATT-TA-C-TCA---TGATCAATGTATAGT--TCTTGAAAT-ATA-AAAATTCTTTGATTCCAAAA-TAATGTATCTGCT---TCATCAGTGTTAAAATAATT----G-AATTCTTTTGT-CTTGTCCTCT--TCTTTTACATGCTT-GGGAATTTGCACAGATATTAAAA-TCTCCA-CAAAGTAT--ACATTGTTGCAAGGT-TCACATTG-TAAAATAC-AAA-CAGC-TTGGTATATTTTTTTCTATTGTAGTAGAATATTGTT-TTTTGCCGGTAAAAGGGA-TAGC-TTGTTGATAAGGTTGATCTAATAACTG-AGTTG---AT-GATTGATTCGC-AGT------ATGC-T------CTG-TT--GATGAAGA------------GT-GTGATTCTTTGACTTAAAAT-GCTGCCTGTAC-CAAGTA-TTATC-AAATGACAT-TGTAAG--AAAACAACAAGAATATTTTTT-AATATTGTGCAAATGCCAATTC--AGTATTGG-ACAAAGCATGCACATTTAGAAGAGATA-TAACAATTTAT-CTTTTAAAA---------------AT-GCACAAAC---ATCACTT-TGTATT--TAGAAGCAT-AAAAAATGCATT--A-GGACT-CATAAATTTAA--CTGGGCCA-ATATCAGGGAT-GCAGTGATGGAT-CTATTAGAGGGG-ACAATAAATTCTCACCTTCACACACCTCAAAGCTTCAACAT-TATTAAAAAAGGGATATTCTTTTTGTT----G-TCATTTTAG--TTTTC--CCCCCCCCCCC-------------CCC----AGT----------G-------------------TATAGTTTTA-ATT---GC--AAAAATAGGTTTT-GTTTT-GAAGCAA--TCATT-CTGAACT-CA--GTCTTGC--TCTAATATC--AAATTAA--TGAAA-------------GCA--AA--------AT-AAC-----AT---TATATAT---TTTACTGATGCA-ATACAC-AATGTTAC--AAATA-AT----ATG---AACATAA-AAT-AATTCTA---TTATTGAGT-------TAAA--AAAATC-TGTTGCATT-GTTT--AAAATTTTGCCAGTCATATGAATATGTGTGTTTGTGT------TATGTGCAGGTAATAAGACATGATA-TCTC-----AGA-C-AAAACCCTGCA--AATCATG-TATGTAAAACAAATTGAC--TAAATAATTTTAATAAAATGCTTTAGATATG----CTTAAATGAATTGTTTTGTAA------TAGATCATGCC-ATGGCAAA--AATATATAAAAGTCGATCTGATCGTAATTTAAA--TTATCAAACTATGTTGT--ATATAATTTCTTTATGCATATGAGGCCTGATGCATCCACCAATTAGACACTGTATACATGTACAGTAGTACACA-CCACATCTTGTAACAAAATTTAG-----TT--ACATGACATTTATTTATCATCACAGGCACCAGAAGTA-GTACCAAGG
gi|20 : GCGGATA-TTC-TCCCG-CCAT-TCTG-ATTGG-CTGTGC--GGAGAT-GGCAACta
gi|21 : aT-GTAGGTTTTTGACTTGC--T-GCTA-CTGTAC-CAAGTA--TATC-CAA-GA-ATCTGTGAA--AA------AAGAATATTTTTagcatctttcgtagatagttcaacgtggtaatg
gi|3 : TGGGGTCACTATGTGAAAAGTTGTCTGAAGT-C-CAA-AC--AAAA--AGATAC-TACAGTCATTATTGG-CAAATACATGT--TATA-CATCAACTTGATCAATGTAT-GC--TATTGAA--TATATAAAATTCTT-GATTCCAAAACTAATGTGTTGGCC--CTCATTAGTGTTAAGATAA-TC--TGCAATTCTTTTGT-CATGCCCTCTTTTCTTTTACATACGT-GGGA-CTTGCAC-GATACTCAAA-TCTCCAACAA-GTA-----AT-GTTGCAAGGTCTCACATTGGTAAAATACCAAA-CAGCCTTGCTATA-TTTTTTCTATTGTAGTAGAATA-TGTT-TTGCCG-GGTAACAGGG-ATA-CTTTGTTGAC--------TCTAATAATTGGAGATG---ATCGAT--ATTCGCAAGT------ATGC-T------CTGTTT--GATGAAGA------------GTGGTGATCTTTTGACTTAAAAT-GCTG-CTGTACACAAGTATTTATC-AAATGA-ATCTGTAGA--AGA--GA-AAG--TATTTTTT-AATATTGTGCAAATGCCAAATCCAG-TATTGGAACAAAGCATG-ACAATTTAGA-AGATGCTAACATTATAT-TCTAT-AAAATAT-CATCATATTCATCGCACGAA---AAT-A-TT-TGTATT--TAGAAGCAT-AGAAAATG-A-G--AGGGACTACAT-AATTAAAGTTCGGGCCA-ATATCAGGGATCGCAATGCTGTATAC---TAGAGGGG---AAT-AAATTCTA-CTTC-CCAACCTC--AGCTT--ACATATATT-AAAAATGGATATTC-TTTTGTTATAAA-TCATTTTAGGA--TTCGA
gi|4 : tattTATACACGT-ACATA-ATT-GTT--------GCCC---CCCCCCCT-------TGTT-------TTTCAACGCAAACACACA-TTTTT-TGGAATCTCGGTCATATTCAAACTTACAGCAGAAA--C-T-GCCACG-CAAAG-CA-ACTTTA-TGAAGGTGAATGGTGGGGAAATCATTGTTTCATTATTTTACTTTTCATTGGGTTGAAGGGTTGCGTGTGTTTGGGGGGGGGGGGGGGTATGGACTATGG-TTGCGTGTGTTGGGGAGTGGGG---GTGC-ATAAGAC-GTG-TATTCT-CGG-TTAAAAC---TTTAT-CATGTACTA--TTGACTAATTAC-ACACTG---TCACAGTTAAATT-ACATTCAAT-T----------ATT-GATAAAAC-------TTA---CCA-TTTGAAA--CGTGT----CGATCTGTTTTTCT--CTC-C-------T-GCA-TTGG---T--TGAATGGG----------GC--CTAC-AGCAA----AGTAA-CAATTAT-TTT-TTCTGT-GAATTTTGTTCT--GAAAATGGGGTATATTCTCACTCC-ACTA-TCCTTTCTGG---GT--AC-GTGTGTCACTTATA-ATTT--CCCCATGCGCA-GTTTCTTCAC-AATTT--T--AAAGC--GA-ATTCA-AA-----GCAATCTCATT-AAAAAATCTGCATCT-AAACA-CC-TCACCA-TGTGCACCATCGGTTGTTTTGA---CGGAGGTCA-GGCGGAAAATTC-TCCCG-CGAT-TCTG-ATTGG-CTGTGC--GAAGAT-GGTAACT-CCAC-CTCCCCTGACGAC
gi|5 : taggttatcgtatatgtcactgtagatagatcttatacacatgATCAGGGAT-GCAGTGCTGGAT-C---TAGAGGGGGACAATAAA-TTCTACCTTTACCAACCTC--AGCTTCAACAT-TATT-AAAAATGAATATTC-TTTTGTT----G-TCATTTTAGGATCTTCGACACCTCCCCCCCTTCCCATCCCATAAG----AGTGTTATTAGTCGTATTC---TCCT---T---TCTACTTTTTTATTTCGGCCTAAAAATAGGTTTTGGTTTTGGAAACAAATCAGTTCTTGAACTGCAGGGTCTTGCTTTCTAATAGCTAAAATT-ATTTGAAGA------------AAAATAAAACCATTTAT-AACCTTTAAT---TGCATATAGGCCTGTT-ATGCACATACACAAATGTCATTAAAATCGATCTAAATG---AAGACA--AATGAATACTAAATTC-TTAAATCTACTTGTAGGTTAAAATAATCTTGCATTCTTTT---AAATCTTG-CAGTCAT-TGAATATGTGTGTTTGTGTTATGGC-AT------G---TAAAACACGATA-TCTC-----AGACCAAAAACCCTGCAAGAA-CCTGATATGTgtg
gi|6 : TATGGGT-GCGTGTGTTG---AGGGGGGTA-GC-T-ATAAGACTGT-CTAATCT-CGGGTAAGAAC---TT-ATGCATGTACTAATTTGACTAACTACTACACTAGCCCCACAGTTAAATTTACATTCAAT-GCTACATATTTATTTGATAAAACAAGAGACTTAAGTCGA-TATGAAATACGTGTGGCTCGATCTCTTATTTT--CTC---------TTGCA-TGCAAC-T--GCAATGGC-TTGAATGGGGC--CTAC-AGCA-----CGTAAACAATTAT-TTT-T-CTGT-GACTTTTGTTCT--GAAAATGGGGTATAT-CTCACTCCTATTA-CCCTTTCTGA---GT--ACCGTGTGTCACTGTTACATTC--CCCCATGCGCA-TGT-CTTCAC-AATTT--T--CAAGC--GA-ATTCA-AA-----GCAATCTCTTTAAAAACATCTGCATCT-AAACA--T-CA------GTG------------TTTTGACGTCGGAGGTCATGACGGACAATTC-TCCCG-CGAT-TCTG-ATGGG-CTGTGC--GAAGAT-GGTAACT-CCAC-CTCCCCTGACGACtt
gi|7 : ----CGATCTGTTTTTCT--CTC-TCTCGATTTTGAAGTGGGGCCT--TCACTGGC-T--------AC--CAGCTAGCAAGCACCGTAAACAATTATATTTGT-CTGTTGACTTTTGTTCTTCGAAA-TGGGTTATAT-C--GCTTCTACTAGCCTTTTCTGAA--GTTCACCGTGTTTCACTTTTACATTA--CCCCA-GCGCA-GTT--TTCACCAATTT--TTCAAAGCCCGATATTCA-AAAGGAAGCAATCTCGTT-AAAACATCTGCATCT-AAACA-CCTCAACCATTGTG------------TTTTGA---CGGAGG-CATGGCGGAAAATTCTTCCCGCCGATCTCTGAATTGG-CTGTGCCAGAAGATGGGTAACTCCCAA-CTCCCCT-ACGAgtggaa
gi|8 : GAATATTTTTT-AATATTGTGCAAATGCCAA----------------------TGCACATTTAGAA-AGATGCTAACACTATAT-CTTATAAAAATAT-CATCATAGT-AT-GCTCAAACATA-TC--TT-TGTATT--TAGAAGCAT-AAAAAATG-A-G--AGGGACT-CATAAATTAAA--TCGGGCCA-ATATCAGGGAT-GCAGTGTTGTAT-C---TAGAGGGG-ACAAT-AAATTCTACCTTCACCAACCTC--AGCTTCAACAA-TATT-A---------ATTC-TGTTGTT----G-TCCTTTTAGGATCTTTGACACCCCCCCCA-------------ACgtg
gi|8 : CACCCCCCCCAACCTC--AGCTTCAACAA-TATT-AActcagcttcaacaatattaatt
gi|9 : gaatattttttaatattgtgcaaatgccaatgcacatttagaaagatgctaacactatatcttataaaaatatcatcatagtatgctcaaacatatctttgtatttagaagcataaaaaatgagagggactcataaattaaatcgggccaatatcagggatgcagtgttgtatctagaggggacaataaattctaccttcaccaacctcagcttcaacaatattaattctgttgttgtccttttaggatctttgaAACAATATATATTTTTAAAAATAT-AATCATATT-AT-GCACACTTATAATCA--T-TGTGTT--TAAAAGTAT-TAAAAAAA-ATGAAAGGGGCT-CATAACACAAA--TCAGGtt