lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 222 1 1 1111 111 11 222222 3333333333 222222 333 11 2222 1 11 1 11 11 111 222222 111 111111 1 111 22 111111 111 111 11 111 1 1111 1 111 444444444444 1 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 222 2222 11 2222 333333333333 1 33333333333 111
lowQualScore : 5 8 0 33 3 2 3 777 0 0 5 4444 999 11 6 6 777777 6666666666 000000 333 6 00 1111 8 8 0 2 00 5 2 11 11 77 777 7 777777 444 888888 99 6 1 2 6 3 6 888 6 22 6 3 999999 6 4 444 777 33 7 777 0 0000 0 777 444444444444 0 3 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111 8 1111 11 1111 000000000000 0 0 44444444444 6 000 8 4
lowQualScore : . . . .. . . . ... . . . .... ... .. . . ...... .......... ...... ... . .. .... . . . . .. . . .. .. .. ... . ...... ... ...... .. . . . . . . ... . .. . . ...... . . ... ... .. . ... . .... . ... ............ . . .................................................................................................................. ... . .... .. .... ............ . . ........... . ... . .
lowQualScore : 0 8 2 88 2 5 2 555 0 0 0 8888 000 00 0 0 555555 3333333333 888888 222 0 22 2222 2 8 0 5 22 2 2 00 00 00 555 0 888888 555 000000 22 7 3 2 7 3 7 777 7 33 7 7 222222 7 4 000 555 88 0 555 0 0000 5 555 888888888888 0 2 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 888 8 2222 22 2222 555555555555 2 0 22222222222 5 000 0 6
consensus : TTAAGGTGGAATGATACACCTGGTGATTTT--TTCTGTANCAATTCCTTGAATAATTT--AT-AG-AAACATCTGTAA---TAACA-NTA--GATCACAATTCTTTG--TN-ATTTATTTTT--CA-NA---TTTTTTTA-----TTCATTTTTTTAACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATANT-GTAGGACTTCTC--ATTTT--GTCTT---TTGAGATATT---CCTGTT--TACCA-TGTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCANCA-TACTTTTTT-AATTATTT-CTGG--AAAA-GGGGNTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGNGGT---TAAATCTG---TACC--AACATCTACAA---ATAGAAAA-TGCACATGNATATTAATG---AT-----A------TGCAA-AAGTCA------AAT---AGAAA------------------AAAAAAAT----------AC-----------------TNNNA--AAA-C-ATGTTAG-TTAAG-------------A--AATTCCGGATGGAAGAG----TTATCTTTCCTAAAA----TAGCNA-GGCC-----AATCCA-CGT-----GG----TTGTTTTTGCGAG-AAAAGGGTACATTTGGCA
Reference ( gi|5 ) : TTAAGGTCGAATGAGACACCTGGTGATTTT--TTCTGTACCAATTCCTTGAATAATT---AT-AG-AAACATCTGTAA---TAACA-ATA--GACCATAATCCTTTG--TA-ATTTATTTTT--CA-AA---TTTTTTTA-----TTCATTTTTA-AACGAAAATTGAATTTCATCAA----TTCTAA-ATTGCATACT-GTAGGAATTTTC--ATTTT--GCTTT---TTGAGATAAT---TCTGTT--TACCA-TCTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCATCA-TGCTTTTTT-AATTGATT-CTGG-TAAAA-GGGGCTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGTGGT---CAAATCTG---TACC--AACATCTACAA---ATAGAAAA-TGCACATGTATGTTTATG---AT-----A------TGCAA-AAGTCA------AAT---AGAAA------------------AAAAAAAC----------AC-----------------TTTTA--AAA---ATGTTAG-TTAAG-------------A--AATTTCGCATGCAAGAG----TTATCGTTCCTAAAA----TAGCTA-GCCC-----AATCCA-CGT-----GG----TTGTTTTTACAAG-AAAGGGGTACATTTGGCA
gi|8 : TTAATGTGAAATGACAAACCTAGTGATTTT--T-CTGCAACAATCCCTCC--TAATTT--ATTAG-ATACGTCTGTAA---TGATC-CCA--GACCACAATTCTTTGCCTA---TTATTTTT--C-------TTTTTTT----------TTTT---AACGGACA-TGAATCTCATCAA----ATTTGA-ATTGCATAAT-TTTGAACTCCTC--ATTTT--G
gi|22 : TTAAGGTGGAATGATGTACCTGGTGATTTT--TTCTGTACCAATTCCTTGtatt
gi|10 : AAGGTGGAATGATACAACTGGTGATTTTTTTTCTGTACCAATTCCTTGAATAATT---AT-AG-AAACATATGTAA---TAACA-ATA--GATCACAATTCTTTG--TC-ATTTATTTTT--CA-TATTTTTTTTTTA-----TTCATGTT
gi|19 : ATGAGACACCTGTTGATATT--TTCTGTAGCAATTCCTTGAATACTT---AT-AG-AAACAC---TAA----AACACATA--TACTACAAgtt
gi|1 : aagggggattTTGAATAATTTATAT-AGGAAACATCTGCTACTTTAACA--TAATGATTTCAATTCTTAG--TCTATTTAATTTTACCATAA---TTTTTGTACAGATTTCGTTTTTTTAACGGAA-CTAGATTTCCTAAAAATCTTTTGATATTGCATAATAGTAGGA-TTCTCCGGTTTTATGCTTTATTTTGAG-TAATATATTTGTTATCACCAATCTCCTGATTGCTAAAATACGACAAAACA-TATT-TT-AGTCAACAATACTTTTTTTAATCTATTTCTAGCTAAAA-GGGTATTTTTTCCAGTTAACAATATAGTTCACTTTCTT-GAAAAATGGTGGTTCATAAGGCTGCCATACCCAAACACCT-CAAAAGATAAAAAAGTGCACGCGGA-GTGTATA---ATCCCTCAGATCGTTGCAACAAGTCATTGGAGAGT---A-AAA------------------GAAAGAAC----------ACAAAAATAATAAAATAATTTCTATTAAACC-GTGTGAGTTTAAT-------------AACAATAT---ATGCAAATGTGTTTTAT-GTTTCTATCACCTGTAGC-----CC-----ATTCCA-CGTATAGAAA----TT-TTTTTGCAAGAAAAGGGGTA-ATTTCGCAa
gi|2 : aaatgataccctggagctttttaggttgctggcggcgcgatgtCATCTCTAA---TTACC-CTA--GATCACAATTCTTTA--TA-TTTTATATTT--CA-CA---ATTCTTTA-----TTCATTTTTT-AACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATACT-ATAGGACTTTTC--ATTTT--GTCTT---TTGAAATATC---CCTGTT--GACCA-TGTT-TGAATC--ATAATACAACAAAACAATATTCTTTAGTCATCA-TACTTTTTA-AAATAGTT-CTGG-GAAAATGGGGTTTTTAT------AACATCAAACTTCAATTTCTT-GAAAACTGGAGGT---CAAATCTG---TACC--AACATCTGCAA---ACAGAAAA-TGCACAGGAATATTAATGATAAT-----A------TACAA-AAA-CA------ATTTGAAGAAGCCTTGTATATAGCCACATAAAGAAAT----------GT-----------------TATAA--AAA---ATGTTAG-TTCAG-------------A--AATTTCGGATGGAAGAG----TAATCTTTCCTTAAA----TAGCAA-GGCCTATCGAATCTA-TCT-----GG----CTGTTTTTGTGAG-AAAAGGGTACAGATGGCAatgcatcttctctccatctaaggccagaatacttcctttactcaaggtaagtgaaattgatataagaccaaaatattgcatgtataaatatacaagaataattttatacataagaattgttataaagaacggcagaccttgcgaaaaacaaagctggttttaatatgtatagcattttttgactaataagacaatgaatgcagtatagagaaaatacaaataagatatattgtaatgacggtcgattaatcatgttatcacataaatatgcaacatataagattaaaacatttgaaggactcggaagaaaaaagaaaatcatatgcatcgaacacgaacattttacacacaaatccagatagaattttcacataacataaatgaaaactgaatatggatatattcatgtatatactatagaactaagagagtacaaccacatataatatatagtaccatttggcaaggagggggatggaaaaatgaaacacagcactttaattagttgacgttacaaacgtattaatagatatcgacagatggtataactaatagaagtctgctaccaatttatttttacatgacatgtcaacaacttatacatgaaat
gi|3 : gA---TTTTTTTA-----TTTATTTTTATAACGGAAATTGAATTTCATCAA----TTGTTA-ATGGCATACT-GTAGAAATTCTC--ATTTT--GTCTT---TTGAGGTATT---CCTGTT--TATCA-TGTC-TGAATA--AAAATACAACAAACCAATATT-TT-AGTCAACA-TACTTTTTT-AATTATTT-CTGG-AAAAA-AGGGATTTATT------AACAATAAACTTCAATTTTTT-GAAAACTGCCGGT---TAAATCTG---TACC--AACATCTACAA---ATAGAAAA-TGCACATGTTTATTAATA---AT-----A------TATAA-AAGTCA------AAT---TG-AA------------------AAAAAAAT----------AT-----------------TGGGA--AAAGCCATA-TAT-TTAAG-------------A--AATTCCAGATGGAAGAG----TTATCTTTCCTAAAA----TAGCCAGGCCC-----AATCAA-CGT-----GG----TTGTTTGTGTGAG-AAATGGGTCCATTTGTCAtatctttttaaataactaaaagcaattagcttctttctcggataagtgagaaatgatacaagaaaaaaaaatacaatgataatgtaatgaaatacttgtacagaattttagtgcagactatagaaattataaagcggggttaatttgtatgcagtgttggttatgagtgaagcagtatgataaaataaagtgcatgctgtcaacaaacatatgtaacatgctacaacagtaggataagtatgttttataagaatataaagaaaaataaaatgttatgcatgaaacacaaacacaaatctgtcaatttcataacaaaacga
gi|9 : TT--ATATT--GTATT---TTGAGATATT---ACTGTT--TACCA-T-----GAATG--ATAATACAGCAAAGCAAAATT-TTGA-TCATTG-TACTTTTTT-AATTATTT-CTGA--AAAA-GGGGCATTTTT------GACAATAAACTTCAATTTCTT-GAAAtatttttttcatctaaaacaattaccttctttcccagataagtgagaaacgatacagaaagacaaaatatgcaatgctatgtagataataatgtactttttacagaattttagtacagcttataaaaattaaagctggattaattttgcttatgaatgaagcagtgcaataaaataatatgcattccgtcatatagagcataatgttgtcaaaatacatcatgcaacatgctacaacagtaggataaacacatttaaaagattttga
gi|20 : gaattacgtactaagcctataTC-CGAATG--AAA-TACAACGAAACAATATT-TTTAGTCACCA-TAATTATTT-AATAATTT-CTGG--AAAA-GGATTTTTTTT------AACA
gi|15 : AATG--AAAATACAACAAAACAATAGT-TTTAGCCATCA-TGCTTTTTT-AATCATTT-CAGG-TAAAA-GGGGCTTTTTT------AGCAATGAACTTCAATTTCTT-GAAAACTGGTGGT---CA
gi|21 : AATCTCCTAGAAAACTGGAGAT---TAAATTTG---TACA--AACATCTATAA---ATAGAAAA-TGCTCAT
gi|7 : aacaATGTGTATTAATG---AT-----A------TGCAA-AAGTCA------AAT---GGAAA------------------AAAAAAATGGGAAAAGAGAC-----------------ATATA--AAA---ATGATAG-TTAAAAATGATAGTTCACA--AATTCCAAATGAAAGAG----TTATCTTTCCTAAAA----TAGCTA-GGCC-----AATTCACCGT-----GGTTATTTATTTTTTTTAG-AAAAGTGTACATTCGGCAagtgt
gi|4 : TTTTTGCAAG-AAAAGGGTACATTTGGCAtattccttcacctaaaggcaattaccttccttcccagataagtgagaaaaggtacagaactacaccattttgcaagcataaataattcatgtatgtaaaatgaattgtattaca
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): AACCTAATATGAAGACCACCCTATAGTTAACATACACATGCAAATCATTGTACATACATACCAAAGCGAATATAAGATAGCCAACATTGATGTTTACTTAGATAAAACTTAATTTGTACATGTGTGGGCAATGTGAAGCGGGGAGCGACGAGAGATGTCTCGACGAAAACAGGGCCAACAAAACCGCACGATGTTACAGCCACCATACATTAATTTAAGTGACCCTTCAAGATATGATAGAAATATAACGTGATATAAAATAGAAGTACTAGTGACCATTTATCTTTACATGCAATGTTAAACAACTTATGCATGCAAT
Unaligned ( gi|11 ): TTTGTACATTTGGCAAGGGGGGGGGGTGGGTGACAAAAATGTTCAGTACAGCACCTAATTAAGGGACCTTTAAGATATTAATAGAATATACGTTAATAAAATAGAAGTACCATTTATTTTACAT
Unaligned ( gi|12 ): ACAAAATCAGTGAATTTCAAAACAAAATGATCACATATTGAGTTCAATGTATACTATATATAGCAATACGCACATATGTTAAGATAAATTAATTTGTACGGGGGGGGGGGGGGCAAAA
Unaligned ( gi|13 ): CATTTTTGCTCATGAATGATGCAGTATAACAAAATAAAATGCATTCTGTAATAGAGCACAATGTTGTCAACAATACATATGCAACAGCAGTAAGATAAATACATTTAGAAGAATCT
Unaligned ( gi|14 ): GGGGGGGGGTTGACAAAATTTTTACAGCATCTAAGTGACCTTCAAGATATTAATAGAATTAAATATACAAGTACCATTTATCTTACATGCAATGTAAAAACTTATGCATGAA
Unaligned ( gi|16 ): GGGTGACAATAATGTTACAGCACCTAATTAATTAAGTGACCTTCAAGATATTTTAAAATAGAATAAATATACGTGTATAGAAGTACCATTTATTTTACATGCAAT
Unaligned ( gi|17 ): TACATACAGCAATAGTGAATACACACATATGATTAGATCAATTAATTTACATTTAGCGGGGGATGCCAAAACTGTTACAGCACCTAATTAAGTGACCTTCA
Unaligned ( gi|18 ): TAATTAAGTGACCTTCAAGATATTAATATAGAATATACGCGTATAAAATAGAAGTATTAGTACCATTTATTTTTAGTACCATTTATTTTACATGCAATG
Unaligned ( gi|23 ): AGAAAAGGATACATTTGGCATATTCTTTCCTCTAAAGGCA
Alignments
lowQualScore : 222222 1111 1 111 111 111 111111111 11111 1111 11 1111 11 11 22 111111 111 111 11 111 3333333333 11 8888888888888888888888888888888888888888888888888888888888888888888888888 333 6666666666666 1111 1111 22222 22222222222
lowQualScore : 99 1 000000 6 1 4444 0 0 0 8 444 2 111 77 6 000 888888888 66666 3 0 0 7777 6 1 11 6 6 99 77 7777 11 1 11 8 6 77 1 5 1 1 5 5 5 55 77 1 666666 5 1 111 444 11 3 444 8 888 8 0000000000 11 8 0 7777777777777777777777777777777777777777777777777777777777777777777777777 333 111 6 8 1111111111111 22 44 3 7777 11 5555 8 00000 8 33333333333 3 2 5
lowQualScore : .. . ...... . . .... . . . . ... . ... .. . ... ......... ..... . . . .... . . .. . . .. .. .... .. . .. . . .. . . . . . . . .. .. . ...... . . ... ... .. . ... . ... . .......... .. . . ......................................................................... ... ... . . ............. .. .. . .... .. .... . ..... . ........... . . .
lowQualScore : 22 5 000000 7 0 2222 8 8 6 0 000 5 777 77 7 444 999999999 77777 2 8 8 0000 7 0 88 7 7 22 77 0000 00 4 00 0 7 99 4 7 4 0 7 7 7 00 99 0 444444 7 0 777 000 00 8 000 0 222 0 2222222222 00 0 8 4444444444444444444444444444444444444444444444444444444444444444444444444 000 000 0 0 0000000000000 22 66 2 0000 88 0000 0 00000 0 44444444444 2 2 7
consensus : TTAAGGTGGA--ATGATACACCTGGTGATTTTT---T--CTG-TANCAATTC----CTTGAATAATTTAT-A---GAAACATCTGTAA---TAACA-NTA-GACCACAATTCTTTGTC-ATTTATTTTT--CATA---TTTTTTTA-----TTCATTTTTTTAACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATACT-GTAGGACT-TCTC--ATTTTGT-CTTT----TGAG--ATATTCCTGTT--TACCA-TGTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCATCA-TACTTTTTT-AAT-TATTTCTGG--AAAA--GGGGCTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGNGGTC---AAATCTG---TACC--AACATCTACAAA---TAGAAAA-TGCACATGTA-TAT-TAAT------G---ATA--TGCAA-AAGTCA---------AAT---AGAAA------------------AAA----AAAAT----------A------------CTNTTAAAA--CATGTTAG-TTAAGAA--AT---------ATTCCGGATGNAAGAG----TTATCTTTCCTAAAATAGC---TAGG-CC-----AATCCA-CGT-----GG----TTGTTTTTGCGAGAAAA-GGGTACATTTGGCA
Reference ( family-3175 ) : TTAAGGTGGA--ATGATACACCTGGTGATTTTT---T--CTG-TANCAATTC----CTTGAATAATTTAT-A---GAAACATCTGTAA---TAACA-NTA-GATCACAATTCTTTGTN-ATTTATTTTT--CANA---TTTTTTTA-----TTCATTTTTTTAACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATANT-GTAGGACT-TCTC--ATTTTGT-CTTT----TGAG--ATATTCCTGTT--TACCA-TGTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCANCA-TACTTTTTT-AAT-TATTTCTGG--AAAA--GGGGNTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGNGGTT---AAATCTG---TACC--AACATCTACAAA---TAGAAAA-TGCACATGNA-TAT-TAAT------G---ATA--TGCAA-AAGTCA---------AAT---AGAAA------------------AAA----AAAAT----------A------------CTNNNAAAA--CATGTTAG-TTAAGAA-------------ATTCCGGATGGAAGAG----TTATCTTTCCTAAAATAGC---NAGG-CC-----AATCCA-CGT-----GG----TTGTTTTTGCGAGAAAA-GGGTACATTTGGCA
gi|1 : A--ATGATAC-CCTGGAGCTTTTTAGGT---TGCTGGCGGCGCGATGTTTGAATAATTTAT-ATAGGAAACATCTGCTACTTTAACA-TAATGATTTCAATTCTTAGTCTATTTAATTTTACCATAA--TTTTTGTACAGATTTCGTTTTTTTAACGGAA-CTAGATTTCCTAAAAATCTTTTGATATTGCATAATAGTAGGA-T-TCTCCGGTTTTATGCTTTATTTTGAGTAATATATTTGTTATCACCAATCTCCTGATTGCTAAAATACGACAAAACA-TATT-TT-AGTCAACAATACTTTTTTTAATCTATTTCTAGCTAAAA--GGGTATTTTTTCCAGTTAACAATATAGTTCACTTTCTT-GAAAAATGGTGGTTCATAAGGCTGCCATACCCAAACACCT-CAAAAGATAAAAAAGTGCACGCGGAGTGTATAATCCCTCAG---ATCGTTGCAACAAGTCATTGGAGAGTAAA---AGAAA------------------GAACACAAAAAT----------AATAAAATAATTTCTATTAAAC--CGTGTGAGTTTAATAACAAT---------AT-----ATGCAAATGTGTTTTATGTTTCT----ATCACCTGTAGC-CC-----ATTCCA-CGTATAGAAA----TT-TTTTTGCAAGAAAAGGGGTA-ATTTCGCA
gi|10 : aAAGGTGGA--ATGATACAACTGGTGATTTTT---TTTCTG-TACCAATTC----CTTGAATAATT-AT-A---GAAACATATGTAA---TAACA-ATA-GATCACAATTCTTTGTC-ATTTATTTTT--CATATTTTTTTTTTA-----TTCATGTTGTTatgcatcttctctccatctaaggccagaatacttcctttactcaaggtaagtgaaattgatataagaccaaaatattgcatgtataaatatacaagaataattttatacataagaattgttataaagaacggcagaccttgcgaaaaacaaagctggttttaatatgtatagcattttttgactaataagacaatgaatgcagtatagagaaaatacaaataagatatattgtaatgacggtcgattaatcatgttatcacataaatatgcaacatataagattaaaacatttgaaggactcggaagaaaaaagaaaatcatatgcatcgaacacgaacattttacacacaaatccagatagaattttcacataacataaatgaaaactgaatatggatatattcatgtatatactatagaactaagagagtacaaccacatataatatatagtaccatttggcaaggagggggatggaaaaatgaaacacagcactttaattagttgacgttacaaacgtattaatagatatcgacagatggtataactaatagaagtctgctaccaatttatttttacatgacatgtcaacaacttatacatgaaat
gi|15 : AATG--AAAATACAACAAAACAATAGT-TTTAGCCATCA-TGCTTTTTT-AAT-CATTTCAGGT-AAAA--GGGGCTTTTTT------AGCAATGAACTTCAATTTCTT-GAAAACTGGTGGTC---A
gi|19 : AAGGGGGATTATGAGACACCTGTTGATATTT---T--CTG-TAGCAATTC----CTTGAAT-ACTTAT-A---GAAACAC---TAA----AACACATA-TACTACAA
gi|2 : CATCTCTAA---TTACC-CTA-GATCACAATTCTTTATA-TTTTATATTT--CACA---ATTCTTTA-----TTCATTTT-TTAACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATACT-ATAGGACT-TTTC--ATTTTGT-CTTT----TGAA--ATATCCCTGTT--GACCA-TGTT-TGAATC--ATAATACAACAAAACAATATTCTTTAGTCATCA-TACTTTTTA-AAA-TAGTTCTGG--GAAAATGGGGTTTTTAT------AACATCAAACTTCAATTTCTT-GAAAACTGGAGGTC---AAATCTG---TACC--AACATCTGCAAA---CAGAAAA-TGCACAGGAA-TAT-TAAT------GATAATA--TACAA-AAA-CA---------ATTTGAAGAAGCCTTGTATATAGCCACATAAA----GAAAT----------G------------TTATAAAAA---ATGTTAG-TTCAGAA-------------ATTTCGGATGGAAGAG----TAATCTTTCCTTAAATAGC---AAGG-CCTATCGAATCTA-TCT-----GG----CTGTTTTTGTGAGAAAA-GGGTACAGATGGCAa
gi|20 : gTC-CGAATG--AAA-TACAACGAAACAATATT-TTTAGTCACCA-TAATTATTT-AAT-AATTTCTGG--AAAA--GGATTTTTTTT------AACAtatctttttaaataactaaaagcaattagcttctttctcggataagtgagaaatgatacaagaaaaaaaaatacaatgataatgtaatgaaatacttgtacagaattttagtgcagactatagaaattataaagcggggttaatttgtatgcagtgttggttatgagtgaagcagtatgataaaataaagtgcatgctgtcaacaaacatatgtaacatgctacaacagtaggataagtatgttttataagaatataaagaaaaataaaatgttatgcatgaaacacaaacacaaatctgtcaatttcataacaaaacga
gi|21 : AATCTCCTAGAAAACTGGAGATT---AAATTTG---TACA--AACATCTATAAA---TAGAAAA-TGCTCAT
gi|22 : aacaTTAAGGTGGA--ATGATGTACCTGGTGATTTTT---T--CTG-TACCAATTC----CTTGagtgt
gi|23 : AGAAAA-GGATACATTTGGCA
gi|3 : A---TTTTTTTA-----TTTATTTTTATAACGGAAATTGAATTTCATCAA----TTGTTA-ATGGCATACT-GTAGAAAT-TCTC--ATTTTGT-CTTT----TGAG--GTATTCCTGTT--TATCA-TGTC-TGAATA--AAAATACAACAAACCAATA-T-TTTAGTCAACA-TACTTTTTT-AAT-TATTTCTGGA-AAAA--AGGGATTTATT------AACAATAAACTTCAATTTTTT-GAAAACTGCCGGTT---AAATCTG---TACC--AACATCTACAAA---TAGAAAA-TGCACATGTT-TAT-TAAT------A---ATA--TATAA-AAGTCA---------AAT---TG-AA------------------AAA----AAAAT----------A------------TTGGGAAAAGCCATA-TAT-TTAAGAA-------------ATTCCAGATGGAAGAG----TTATCTTTCCTAAAATAGC---CAGGCCC-----AATCAA-CGT-----GG----TTGTTTGTGTGAGAAAT-GGGTCCATTTGTCAtattctttcctctaaaggca
gi|4 : TTTTTGCAAGAAAA-GGGTACATTTGGCAtatttttttcatctaaaacaattaccttctttcccagataagtgagaaacgatacagaaagacaaaatatgcaatgctatgtagataataatgtactttttacagaattttagtacagcttataaaaattaaagctggattaattttgcttatgaatgaagcagtgcaataaaataatatgcattccgtcatatagagcataatgttgtcaaaatacatcatgcaacatgctacaacagtaggataaacacatttaaaagattttga
gi|5 : TTAAGGTCGA--ATGAGACACCTGGTGATTTTT---T--CTG-TACCAATTC----CTTGAATAATT-AT-A---GAAACATCTGTAA---TAACA-ATA-GACCATAATCCTTTGTA-ATTTATTTTT--CAAA---TTTTTTTA-----TTCATTTTTA-AACGAAAATTGAATTTCATCAA----TTCTAA-ATTGCATACT-GTAGGAAT-TTTC--ATTTTGC-TTTT----TGAG--ATAATTCTGTT--TACCA-TCTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCATCA-TGCTTTTTT-AAT-TGATTCTGGT-AAAA--GGGGCTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGTGGTC---AAATCTG---TACC--AACATCTACAAA---TAGAAAA-TGCACATGTA-TGT-TTAT------G---ATA--TGCAA-AAGTCA---------AAT---AGAAA------------------AAA----AAAAC----------A------------CTTTTAAAA---ATGTTAG-TTAAGAA-------------ATTTCGCATGCAAGAG----TTATCGTTCCTAAAATAGC---TAGC-CC-----AATCCA-CGT-----GG----TTGTTTTTACAAGAAAG-GGGTACATTTGGCAtaatctttcctctaaaagcaattaccttctttcccaataaatgaggaaatgataaagaaagacaaaactatgcaatgttaatatacacgaactatatccttttaagatttagcgcaagctatagaaaataaagctggttaatttgtattgcatttttgctcatgaatgagcagtaaataaaataaaatgcattcttgtaatagagtataaatgttttcaacacaatacatatggcaacatcagtaagatataactacattaaagaaactgaataaaaagaaagaatcatatgcatgtaaacacgatacattttaaaaaaaacagtaatttcaaaaactaataatgaagaccactattgaaattcaatggtataatacaaacagccagatgttgaatacacacaatagtttagataaattaatttgtacatttagcaggggggggggggtgacaaaaatgttacagcacctaattaagtgaccttaaaaatattaaaatatatacgtgtataaaaatagaagtaccatttattttacatgcaatgtaaaaacttatgcatgaaa
gi|7 : ATGTG-TAT-TAAT------G---ATA--TGCAA-AAGTCA---------AAT---GGAAA------------------AAA----AAAATGGGAAAAGAGA------------CATATAAAA---ATGATAG-TTAAAAATGATAGTTCACAAATTCCAAATGAAAGAG----TTATCTTTCCTAAAATAGC---TAGG-CC-----AATTCACCGT-----GGTTATTTATTTTTTTTAGAAAA-GTGTACATTCGGCA
gi|8 : TTAATGTGAA--ATGACAAACCTAGTGATTTTT------CTG-CAACAATCC----CTCC--TAATTTATTA---GATACGTCTGTAA---TGATC-CCA-GACCACAATTCTTTGCC-TATTATTTTT--C---------TTTT----------TTTTTTTAACGGACAT-GAATCTCATCAA----ATTTGA-ATTGCATAAT-TTTGAACT-CCTC--ATTTTGT-ATTtattccttcacctaaaggcaattaccttccttcccagataagtgagaaaaggtacagaactacaccattttgcaagcataaataattcatgtatgtaaaatgaattgtattaca
gi|9 : GA-ATTACGTACT---AAGCCTATATT--ATATTGT-ATTT----TGAG--ATATTACTGTT--TACCA-TG-----AATG--ATAATACAGCAAAGCAAAATT-TTGA-TCATTG-TACTTTTTT-AAT-TATTTCTGA--AAAA--GGGGCATTTTT------GACAATAAACTTCAATTTCTT-GAAA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): AACCTAATATGAAGACCACCCTATAGTTAACATACACATGCAAATCATTGTACATACATACCAAAGCGAATATAAGATAGCCAACATTGATGTTTACTTAGATAAAACTTAATTTGTACATGTGTGGGCAATGTGAAGCGGGGAGCGACGAGAGATGTCTCGACGAAAACAGGGCCAACAAAACCGCACGATGTTACAGCCACCATACATTAATTTAAGTGACCCTTCAAGATATGATAGAAATATAACGTGATATAAAATAGAAGTACTAGTGACCATTTATCTTTACATGCAATGTTAAACAACTTATGCATGCAAT
Unaligned ( gi|11 ): TTTGTACATTTGGCAAGGGGGGGGGGTGGGTGACAAAAATGTTCAGTACAGCACCTAATTAAGGGACCTTTAAGATATTAATAGAATATACGTTAATAAAATAGAAGTACCATTTATTTTACAT
Unaligned ( gi|12 ): ACAAAATCAGTGAATTTCAAAACAAAATGATCACATATTGAGTTCAATGTATACTATATATAGCAATACGCACATATGTTAAGATAAATTAATTTGTACGGGGGGGGGGGGGGCAAAA
Unaligned ( gi|13 ): CATTTTTGCTCATGAATGATGCAGTATAACAAAATAAAATGCATTCTGTAATAGAGCACAATGTTGTCAACAATACATATGCAACAGCAGTAAGATAAATACATTTAGAAGAATCT
Unaligned ( gi|14 ): GGGGGGGGGTTGACAAAATTTTTACAGCATCTAAGTGACCTTCAAGATATTAATAGAATTAAATATACAAGTACCATTTATCTTACATGCAATGTAAAAACTTATGCATGAA
Unaligned ( gi|16 ): GGGTGACAATAATGTTACAGCACCTAATTAATTAAGTGACCTTCAAGATATTTTAAAATAGAATAAATATACGTGTATAGAAGTACCATTTATTTTACATGCAAT
Unaligned ( gi|17 ): TACATACAGCAATAGTGAATACACACATATGATTAGATCAATTAATTTACATTTAGCGGGGGATGCCAAAACTGTTACAGCACCTAATTAAGTGACCTTCA
Unaligned ( gi|18 ): TAATTAAGTGACCTTCAAGATATTAATATAGAATATACGCGTATAAAATAGAAGTATTAGTACCATTTATTTTTAGTACCATTTATTTTACATGCAATG
Alignments
lowQualScore : 222222 1111 1 111 111 111111111 11111 1111 11 1111 11 11 22 111111 111 111 11 111 111 3333333333 11 99999999999999999999999999999999999999999999999999999999999999999999999999999 222 66666666666666666 1111 111 22222 22222222222
lowQualScore : 99 1 000000 6 1 4444 0 0 0 8 444 2 111 77 6 99 999999999 66666 3 44 7777 6 11 6 6 99 77 7777 11 1 11 8 6 77 1 5 1 0 5 5 5 55 77 1 666666 5 1 111 444 11 3 444 8 444 2 0 0000000000 11 8 0 11111111111111111111111111111111111111111111111111111111111111111111111111111 666 6 8 11111111111111111 22 44 1 7777 11 444 8 00000 8 33333333333 3 2 5
lowQualScore : .. . ...... . . .... . . . . ... . ... .. . .. ......... ..... . .. .... . .. . . .. .. .... .. . .. . . .. . . . . . . . .. .. . ...... . . ... ... .. . ... . ... . . .......... .. . . ............................................................................. ... . . ................. .. .. . .... .. ... . ..... . ........... . . .
lowQualScore : 22 5 000000 7 0 2222 8 8 6 0 000 5 777 77 7 44 111111111 77777 2 66 0000 7 88 7 7 22 77 0000 00 4 00 0 7 99 4 7 4 6 7 7 7 00 99 7 444444 7 0 777 000 00 8 000 0 000 2 8 2222222222 00 0 8 88888888888888888888888888888888888888888888888888888888888888888888888888888 000 0 0 88888888888888888 22 66 0 0000 88 000 0 00000 0 44444444444 2 2 7
consensus : TTAAGGTGGA--ATGATACACCTGGTGATTTTT---T--CTG-TANCAATTC----CTTGAATAATTTAT-A---GAAACATCTGTAA---TAACA-NTA-GACCACAATTCTTTGTC-ATTTATTTTT--CATA---TTTTTTTA-----TTCATTTTTTTAACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATACT-GTAGGACT-TCTC--ATTTTGT-CTTT----TGAG--ATATTCCTGTT--TACCA-TGTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCATCA-TACTTTTTT-AAT-TATTTCTGG--AAAA--GGGGCTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGNGGTC---AAATCTG---TACC--AACATCTACAAA---TAGAAAA-TGCACATG---TGTATTAAT------G---ATA--TGCAA-AAGTCA---------AAT---AGAAA------------------AAA----AAAAT----------A------------CTNNTAAAA--CATGTTAG-TTAAGA--A--ATA---------TTCCGGATGNAAGAG----TTATCTTTCCTAAAATAGC---TAGG-CC-----AATCCA-CGT-----GG----TTGTTTTTGCGAGAAAA-GGGTACATTTGGCA
Reference ( family-3175 ) : TTAAGGTGGA--ATGATACACCTGGTGATTTTT---T--CTG-TANCAATTC----CTTGAATAATTTAT-A---GAAACATCTGTAA---TAACA-NTA-GACCACAATTCTTTGTC-ATTTATTTTT--CATA---TTTTTTTA-----TTCATTTTTTTAACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATACT-GTAGGACT-TCTC--ATTTTGT-CTTT----TGAG--ATATTCCTGTT--TACCA-TGTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCATCA-TACTTTTTT-AAT-TATTTCTGG--AAAA--GGGGCTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGNGGTC---AAATCTG---TACC--AACATCTACAAA---TAGAAAA-TGCACATG---TATATTAAT------G---ATA--TGCAA-AAGTCA---------AAT---AGAAA------------------AAA----AAAAT----------A------------CTNTTAAAA--CATGTTAG-TTAAGA--A--ATA---------TTCCGGATGNAAGAG----TTATCTTTCCTAAAATAGC---TAGG-CC-----AATCCA-CGT-----GG----TTGTTTTTGCGAGAAAA-GGGTACATTTGGCA
gi|1 : A--ATGATAC-CCTGGAGCTTTTTAGGT---TGCTGGCGGCGCGATGTTTGAATAATTTAT-ATAGGAAACATCTGCTACTTTAACA-TAATGATTTCAATTCTTAGTCTATTTAATTTTACCATAA--TTTTTGTACAGATTTCGTTTTTTTAACGGAA-CTAGATTTCCTAAAAATCTTTTGATATTGCATAATAGTAGGA-T-TCTCCGGTTTTATGCTTTATTTTGAGTAATATATTTGTTATCACCAATCTCCTGATTGCTAAAATACGACAAAACA-TATT-TT-AGTCAACAATACTTTTTTTAATCTATTTCTAGCTAAAA--GGGTATTTTTTCCAGTTAACAATATAGTTCACTTTCTT-GAAAAATGGTGGTTCATAAGGCTGCCATACCCAAACACCT-CAAAAGATAAAAAAGTGCACGCGGAGTGTAT-AATCCCTCAG---ATCGTTGCAACAAGTCATTGGAGAGTAAA---AGAAA------------------GAACACAAAAAT----------AATAAAATAATTTCTATTAAAC--CGTGTGAGTTTAATAACA--ATA---------T-----ATGCAAATGTGTTTTATGTTTCT----ATCACCTGTAGC-CC-----ATTCCA-CGTATAGAAA----TT-TTTTTGCAAGAAAAGGGGTA-ATTTCGCA
gi|10 : aAAGGTGGA--ATGATACAACTGGTGATTTTT---TTTCTG-TACCAATTC----CTTGAATAATT-AT-A---GAAACATATGTAA---TAACA-ATA-GATCACAATTCTTTGTC-ATTTATTTTT--CATATTTTTTTTTTA-----TTCATGTTGTTatgcatcttctctccatctaaggccagaatacttcctttactcaaggtaagtgaaattgatataagaccaaaatattgcatgtataaatatacaagaataattttatacataagaattgttataaagaacggcagaccttgcgaaaaacaaagctggttttaatatgtatagcattttttgactaataagacaatgaatgcagtatagagaaaatacaaataagatatattgtaatgacggtcgattaatcatgttatcacataaatatgcaacatataagattaaaacatttgaaggactcggaagaaaaaagaaaatcatatgcatcgaacacgaacattttacacacaaatccagatagaattttcacataacataaatgaaaactgaatatggatatattcatgtatatactatagaactaagagagtacaaccacatataatatatagtaccatttggcaaggagggggatggaaaaatgaaacacagcactttaattagttgacgttacaaacgtattaatagatatcgacagatggtataactaatagaagtctgctaccaatttatttttacatgacatgtcaacaacttatacatgaaat
gi|15 : AATG--AAAATACAACAAAACAATAGT-TTTAGCCATCA-TGCTTTTTT-AAT-CATTTCAGGT-AAAA--GGGGCTTTTTT------AGCAATGAACTTCAATTTCTT-GAAAACTGGTGGTC---A
gi|19 : AAGGGGGATTATGAGACACCTGTTGATATTT---T--CTG-TAGCAATTC----CTTGAAT-ACTTAT-A---GAAACAC---TAA----AACACATA-TACTACAA
gi|2 : CATCTCTAA---TTACC-CTA-GATCACAATTCTTTATA-TTTTATATTT--CACA---ATTCTTTA-----TTCATTTT-TTAACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATACT-ATAGGACT-TTTC--ATTTTGT-CTTT----TGAA--ATATCCCTGTT--GACCA-TGTT-TGAATC--ATAATACAACAAAACAATATTCTTTAGTCATCA-TACTTTTTA-AAA-TAGTTCTGG--GAAAATGGGGTTTTTAT------AACATCAAACTTCAATTTCTT-GAAAACTGGAGGTC---AAATCTG---TACC--AACATCTGCAAA---CAGAAAA-TGCACAGG---AATATTAAT------GATAATA--TACAA-AAA-CA---------ATTTGAAGAAGCCTTGTATATAGCCACATAAA----GAAAT----------G------------TTA-TAAAA--AATGTTAG-TTCAGA--A----A---------TTTCGGATGGAAGAG----TAATCTTTCCTTAAATAGC---AAGG-CCTATCGAATCTA-TCT-----GG----CTGTTTTTGTGAGAAAA-GGGTACAGATGGCAa
gi|20 : gTC-CGAATG--AAA-TACAACGAAACAATATT-TTTAGTCACCA-TAATTATTT-AAT-AATTTCTGG--AAAA--GGATTTTTTTT------AACAtatctttttaaataactaaaagcaattagcttctttctcggataagtgagaaatgatacaagaaaaaaaaatacaatgataatgtaatgaaatacttgtacagaattttagtgcagactatagaaattataaagcggggttaatttgtatgcagtgttggttatgagtgaagcagtatgataaaataaagtgcatgctgtcaacaaacatatgtaacatgctacaacagtaggataagtatgttttataagaatataaagaaaaataaaatgttatgcatgaaacacaaacacaaatctgtcaatttcataacaaaacga
gi|21 : AATCTCCTAGAAAACTGGAGATT---AAATTTG---TACA--AACATCTATAAA---TAGAAAA-TGCTCAT
gi|22 : aacaTTAAGGTGGA--ATGATGTACCTGGTGATTTTT---T--CTG-TACCAATTC----CTTGagtgt
gi|23 : AGAAAA-GGATACATTTGGCA
gi|3 : A---TTTTTTTA-----TTTATTTTTATAACGGAAATTGAATTTCATCAA----TTGTTA-ATGGCATACT-GTAGAAAT-TCTC--ATTTTGT-CTTT----TGAG--GTATTCCTGTT--TATCA-TGTC-TGAATA--AAAATACAACAAACCAATA-T-TTTAGTCAACA-TACTTTTTT-AAT-TATTTCTGGA-AAAA--AGGGATTTATT------AACAATAAACTTCAATTTTTT-GAAAACTGCCGGTT---AAATCTG---TACC--AACATCTACAAA---TAGAAAA-TGCACATG---TTTATTAAT------A---ATA--TATAA-AAGTCA---------AAT---TG-AA------------------AAA----AAAAT----------A------------TTGGGAAAAGCCATA-TAT-TTAAGA--A----A---------TTCCAGATGGAAGAG----TTATCTTTCCTAAAATAGC---CAGGCCC-----AATCAA-CGT-----GG----TTGTTTGTGTGAGAAAT-GGGTCCATTTGTCAtattctttcctctaaaggca
gi|4 : TTTTTGCAAGAAAA-GGGTACATTTGGCAtatttttttcatctaaaacaattaccttctttcccagataagtgagaaacgatacagaaagacaaaatatgcaatgctatgtagataataatgtactttttacagaattttagtacagcttataaaaattaaagctggattaattttgcttatgaatgaagcagtgcaataaaataatatgcattccgtcatatagagcataatgttgtcaaaatacatcatgcaacatgctacaacagtaggataaacacatttaaaagattttga
gi|5 : TTAAGGTCGA--ATGAGACACCTGGTGATTTTT---T--CTG-TACCAATTC----CTTGAATAATT-AT-A---GAAACATCTGTAA---TAACA-ATA-GACCATAATCCTTTGTA-ATTTATTTTT--CAAA---TTTTTTTA-----TTCATTTTTA-AACGAAAATTGAATTTCATCAA----TTCTAA-ATTGCATACT-GTAGGAAT-TTTC--ATTTTGC-TTTT----TGAG--ATAATTCTGTT--TACCA-TCTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCATCA-TGCTTTTTT-AAT-TGATTCTGGT-AAAA--GGGGCTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGTGGTC---AAATCTG---TACC--AACATCTACAAA---TAGAAAA-TGCACATG---TATGTTTAT------G---ATA--TGCAA-AAGTCA---------AAT---AGAAA------------------AAA----AAAAC----------A------------CTTTTAAAA---ATGTTAG-TTAAGA--A----A---------TTTCGCATGCAAGAG----TTATCGTTCCTAAAATAGC---TAGC-CC-----AATCCA-CGT-----GG----TTGTTTTTACAAGAAAG-GGGTACATTTGGCAtaatctttcctctaaaagcaattaccttctttcccaataaatgaggaaatgataaagaaagacaaaactatgcaatgttaatatacacgaactatatccttttaagatttagcgcaagctatagaaaataaagctggttaatttgtattgcatttttgctcatgaatgagcagtaaataaaataaaatgcattcttgtaatagagtataaatgttttcaacacaatacatatggcaacatcagtaagatataactacattaaagaaactgaataaaaagaaagaatcatatgcatgtaaacacgatacattttaaaaaaaacagtaatttcaaaaactaataatgaagaccactattgaaattcaatggtataatacaaacagccagatgttgaatacacacaatagtttagataaattaatttgtacatttagcaggggggggggggtgacaaaaatgttacagcacctaattaagtgaccttaaaaatattaaaatatatacgtgtataaaaatagaagtaccatttattttacatgcaatgtaaaaacttatgcatgaaa
gi|7 : ATG---TGTATTAAT------G---ATA--TGCAA-AAGTCA---------AAT---GGAAA------------------AAA----AAAATGGGAAAAGAGA------------CATATAAAA---ATGATAG-TTAAAA--ATGATAGTTCACAAATTCCAAATGAAAGAG----TTATCTTTCCTAAAATAGC---TAGG-CC-----AATTCACCGT-----GGTTATTTATTTTTTTTAGAAAA-GTGTACATTCGGCA
gi|8 : TTAATGTGAA--ATGACAAACCTAGTGATTTTT------CTG-CAACAATCC----CTCC--TAATTTATTA---GATACGTCTGTAA---TGATC-CCA-GACCACAATTCTTTGCC-TATTATTTTT--C------TTTT-------------TTTTTTTAACGGACA-TGAATCTCATCAA----ATTTGA-ATTGCATAAT-TTTGAACT-CCTC--ATTTTGT-ATTtattccttcacctaaaggcaattaccttccttcccagataagtgagaaaaggtacagaactacaccattttgcaagcataaataattcatgtatgtaaaatgaattgtattaca
gi|9 : GA-ATTACGTACT---AAGCCTATATT--ATATTGT-ATTT----TGAG--ATATTACTGTT--TACCA-TG-----AATG--ATAATACAGCAAAGCAAAATT-TTGA-TCATTG-TACTTTTTT-AAT-TATTTCTGA--AAAA--GGGGCATTTTT------GACAATAAACTTCAATTTCTT-GAAA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): AACCTAATATGAAGACCACCCTATAGTTAACATACACATGCAAATCATTGTACATACATACCAAAGCGAATATAAGATAGCCAACATTGATGTTTACTTAGATAAAACTTAATTTGTACATGTGTGGGCAATGTGAAGCGGGGAGCGACGAGAGATGTCTCGACGAAAACAGGGCCAACAAAACCGCACGATGTTACAGCCACCATACATTAATTTAAGTGACCCTTCAAGATATGATAGAAATATAACGTGATATAAAATAGAAGTACTAGTGACCATTTATCTTTACATGCAATGTTAAACAACTTATGCATGCAAT
Unaligned ( gi|11 ): TTTGTACATTTGGCAAGGGGGGGGGGTGGGTGACAAAAATGTTCAGTACAGCACCTAATTAAGGGACCTTTAAGATATTAATAGAATATACGTTAATAAAATAGAAGTACCATTTATTTTACAT
Unaligned ( gi|12 ): ACAAAATCAGTGAATTTCAAAACAAAATGATCACATATTGAGTTCAATGTATACTATATATAGCAATACGCACATATGTTAAGATAAATTAATTTGTACGGGGGGGGGGGGGGCAAAA
Unaligned ( gi|13 ): CATTTTTGCTCATGAATGATGCAGTATAACAAAATAAAATGCATTCTGTAATAGAGCACAATGTTGTCAACAATACATATGCAACAGCAGTAAGATAAATACATTTAGAAGAATCT
Unaligned ( gi|14 ): GGGGGGGGGTTGACAAAATTTTTACAGCATCTAAGTGACCTTCAAGATATTAATAGAATTAAATATACAAGTACCATTTATCTTACATGCAATGTAAAAACTTATGCATGAA
Unaligned ( gi|16 ): GGGTGACAATAATGTTACAGCACCTAATTAATTAAGTGACCTTCAAGATATTTTAAAATAGAATAAATATACGTGTATAGAAGTACCATTTATTTTACATGCAAT
Unaligned ( gi|17 ): TACATACAGCAATAGTGAATACACACATATGATTAGATCAATTAATTTACATTTAGCGGGGGATGCCAAAACTGTTACAGCACCTAATTAAGTGACCTTCA
Unaligned ( gi|18 ): TAATTAAGTGACCTTCAAGATATTAATATAGAATATACGCGTATAAAATAGAAGTATTAGTACCATTTATTTTTAGTACCATTTATTTTACATGCAATG
Alignments
lowQualScore : 222222 1111 1 111 111 111111111 11111 1111 11 1111 11 11 22 111111 111 111 11 111 111 3333333333 11 99999999999999999999999999999999999999999999999999999999999999999999999999 222 66666666666666666 1111 111 22222 22222222222
lowQualScore : 99 1 000000 6 1 4444 0 0 0 8 444 2 111 77 6 99 999999999 66666 3 44 7777 6 11 6 6 99 77 7777 11 1 11 8 6 77 1 5 1 0 5 5 5 55 77 1 666666 5 1 111 444 11 3 444 8 888 0 0000000000 11 8 0 00000000000000000000000000000000000000000000000000000000000000000000000000 22 666 6 8 11111111111111111 22 44 1 7777 11 444 8 00000 8 33333333333 3 2 5
lowQualScore : .. . ...... . . .... . . . . ... . ... .. . .. ......... ..... . .. .... . .. . . .. .. .... .. . .. . . .. . . . . . . . .. .. . ...... . . ... ... .. . ... . ... . .......... .. . . .......................................................................... .. ... . . ................. .. .. . .... .. ... . ..... . ........... . . .
lowQualScore : 22 5 000000 7 0 2222 8 8 6 0 000 5 777 77 7 44 111111111 77777 2 66 0000 7 88 7 7 22 77 0000 00 4 00 0 7 99 4 7 4 6 7 7 7 00 99 7 444444 7 0 777 000 00 8 000 0 333 8 2222222222 00 0 8 66666666666666666666666666666666666666666666666666666666666666666666666666 00 000 0 0 88888888888888888 22 66 0 0000 88 000 0 00000 0 44444444444 2 2 7
consensus : TTAAGGTGGA--ATGATACACCTGGTGATTTTT---T--CTG-TANCAATTC----CTTGAATAATTTAT-A---GAAACATCTGTAA---TAACA-NTA-GACCACAATTCTTTGTC-ATTTATTTTT--CATA---TTTTTTTA-----TTCATTTTTTTAACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATACT-GTAGGACT-TCTC--ATTTTGT-CTTT----TGAG--ATATTCCTGTT--TACCA-TGTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCATCA-TACTTTTTT-AAT-TATTTCTGG--AAAA--GGGGCTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGNGGT---CAAATCTG---TACC--AACATCTACAA---ATAGAAAA-TGCACAT---GTGTATTAAT------G---ATA--TGCAA-AAGTCA---------AAT---AGAAA------------------AA----AAAAAT----------A------------CTTNTAAAA--CATGTTAG-TTAAGA--A--ATA---------TTCCGGATGNAAGAG----TTATCTTTCCTAAAATAGC---TAGG-CC-----AATCCA-CGT-----GG----TTGTTTTTGCGAGAAAA-GGGTACATTTGGCA
Reference ( family-3175 ) : TTAAGGTGGA--ATGATACACCTGGTGATTTTT---T--CTG-TANCAATTC----CTTGAATAATTTAT-A---GAAACATCTGTAA---TAACA-NTA-GACCACAATTCTTTGTC-ATTTATTTTT--CATA---TTTTTTTA-----TTCATTTTTTTAACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATACT-GTAGGACT-TCTC--ATTTTGT-CTTT----TGAG--ATATTCCTGTT--TACCA-TGTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCATCA-TACTTTTTT-AAT-TATTTCTGG--AAAA--GGGGCTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGNGGT---CAAATCTG---TACC--AACATCTACAA---ATAGAAAA-TGCACAT---GTGTATTAAT------G---ATA--TGCAA-AAGTCA---------AAT---AGAAA------------------AA----AAAAAT----------A------------CTNNTAAAA--CATGTTAG-TTAAGA--A--ATA---------TTCCGGATGNAAGAG----TTATCTTTCCTAAAATAGC---TAGG-CC-----AATCCA-CGT-----GG----TTGTTTTTGCGAGAAAA-GGGTACATTTGGCA
gi|1 : A--ATGATAC-CCTGGAGCTTTTTAGGT---TGCTGGCGGCGCGATGTTTGAATAATTTAT-ATAGGAAACATCTGCTACTTTAACA-TAATGATTTCAATTCTTAGTCTATTTAATTTTACCATAA--TTTTTGTACAGATTTCGTTTTTTTAACGGAA-CTAGATTTCCTAAAAATCTTTTGATATTGCATAATAGTAGGA-T-TCTCCGGTTTTATGCTTTATTTTGAGTAATATATTTGTTATCACCAATCTCCTGATTGCTAAAATACGACAAAACA-TATT-TT-AGTCAACAATACTTTTTTTAATCTATTTCTAGCTAAAA--GGGTATTTTTTCCAGTTAACAATATAGTTCACTTTCTT-GAAAAATGGTGGTTCATAAGGCTGCCATACCCAAACACCT-CAAAAGATAAAAAAGTGCACGCGGAGTGTA-TAATCCCTCAG---ATCGTTGCAACAAGTCATTGGAGAGTAAA---AGAAA------------------GAACACAAAAAT----------AATAAAATAATTTCTATTAAAC--CGTGTGAGTTTAATAACA--ATA---------T-----ATGCAAATGTGTTTTATGTTTCT----ATCACCTGTAGC-CC-----ATTCCA-CGTATAGAAA----TT-TTTTTGCAAGAAAAGGGGTA-ATTTCGCA
gi|10 : aAAGGTGGA--ATGATACAACTGGTGATTTTT---TTTCTG-TACCAATTC----CTTGAATAATT-AT-A---GAAACATATGTAA---TAACA-ATA-GATCACAATTCTTTGTC-ATTTATTTTT--CATATTTTTTTTTTA-----TTCATGTTGTTatgcatcttctctccatctaaggccagaatacttcctttactcaaggtaagtgaaattgatataagaccaaaatattgcatgtataaatatacaagaataattttatacataagaattgttataaagaacggcagaccttgcgaaaaacaaagctggttttaatatgtatagcattttttgactaataagacaatgaatgcagtatagagaaaatacaaataagatatattgtaatgacggtcgattaatcatgttatcacataaatatgcaacatataagattaaaacatttgaaggactcggaagaaaaaagaaaatcatatgcatcgaacacgaacattttacacacaaatccagatagaattttcacataacataaatgaaaactgaatatggatatattcatgtatatactatagaactaagagagtacaaccacatataatatatagtaccatttggcaaggagggggatggaaaaatgaaacacagcactttaattagttgacgttacaaacgtattaatagatatcgacagatggtataactaatagaagtctgctaccaatttatttttacatgacatgtcaacaacttatacatgaaat
gi|15 : AATG--AAAATACAACAAAACAATAGT-TTTAGCCATCA-TGCTTTTTT-AAT-CATTTCAGGT-AAAA--GGGGCTTTTTT------AGCAATGAACTTCAATTTCTT-GAAAACTGGTGGT---CA
gi|19 : AAGGGGGATTATGAGACACCTGTTGATATTT---T--CTG-TAGCAATTC----CTTGAAT-ACTTAT-A---GAAACAC---TAA----AACACATA-TACTACAA
gi|2 : CATCTCTAA---TTACC-CTA-GATCACAATTCTTTATA-TTTTATATTT--CACA---ATTCTTTA-----TTCATTTT-TTAACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATACT-ATAGGACT-TTTC--ATTTTGT-CTTT----TGAA--ATATCCCTGTT--GACCA-TGTT-TGAATC--ATAATACAACAAAACAATATTCTTTAGTCATCA-TACTTTTTA-AAA-TAGTTCTGG--GAAAATGGGGTTTTTAT------AACATCAAACTTCAATTTCTT-GAAAACTGGAGGT---CAAATCTG---TACC--AACATCTGCAA---ACAGAAAA-TGCACAG---GAATATTAAT------GATAATA--TACAA-AAA-CA---------ATTTGAAGAAGCCTTGTATATAGCCACATAA----AGAAAT----------G-------------TTATAAAA--AATGTTAG-TTCAGA--A----A---------TTTCGGATGGAAGAG----TAATCTTTCCTTAAATAGC---AAGG-CCTATCGAATCTA-TCT-----GG----CTGTTTTTGTGAGAAAA-GGGTACAGATGGCAa
gi|20 : gTC-CGAATG--AAA-TACAACGAAACAATATT-TTTAGTCACCA-TAATTATTT-AAT-AATTTCTGG--AAAA--GGATTTTTTTT------AACAtatctttttaaataactaaaagcaattagcttctttctcggataagtgagaaatgatacaagaaaaaaaaatacaatgataatgtaatgaaatacttgtacagaattttagtgcagactatagaaattataaagcggggttaatttgtatgcagtgttggttatgagtgaagcagtatgataaaataaagtgcatgctgtcaacaaacatatgtaacatgctacaacagtaggataagtatgttttataagaatataaagaaaaataaaatgttatgcatgaaacacaaacacaaatctgtcaatttcataacaaaacga
gi|21 : AATCTCCTAGAAAACTGGAGAT---TAAATTTG---TACA--AACATCTATAA---ATAGAAAA-TGCTCATA--GTGT
gi|22 : aacaTTAAGGTGGA--ATGATGTACCTGGTGATTTTT---T--CTG-TACCAATTC----CTTG
gi|23 : AGAAAA-GGATACATTTGGCA
gi|3 : A---TTTTTTTA-----TTTATTTTTATAACGGAAATTGAATTTCATCAA----TTGTTA-ATGGCATACT-GTAGAAAT-TCTC--ATTTTGT-CTTT----TGAG--GTATTCCTGTT--TATCA-TGTC-TGAATA--AAAATACAACAAACCAATA-T-TTTAGTCAACA-TACTTTTTT-AAT-TATTTCTGGA-AAAA--AGGGATTTATT------AACAATAAACTTCAATTTTTT-GAAAACTGCCGGT---TAAATCTG---TACC--AACATCTACAA---ATAGAAAA-TGCACAT---GTTTATTAAT------A---ATA--TATAA-AAGTCA---------AAT---TG-AA------------------AA----AAAAAT----------A------------TTGGGAAAAGCCATA-TAT-TTAAGA--A----A---------TTCCAGATGGAAGAG----TTATCTTTCCTAAAATAGC---CAGGCCC-----AATCAA-CGT-----GG----TTGTTTGTGTGAGAAAT-GGGTCCATTTGTCAtattctttcctctaaaggca
gi|4 : TTTTTGCAAGAAAA-GGGTACATTTGGCAtatttttttcatctaaaacaattaccttctttcccagataagtgagaaacgatacagaaagacaaaatatgcaatgctatgtagataataatgtactttttacagaattttagtacagcttataaaaattaaagctggattaattttgcttatgaatgaagcagtgcaataaaataatatgcattccgtcatatagagcataatgttgtcaaaatacatcatgcaacatgctacaacagtaggataaacacatttaaaagattttga
gi|5 : TTAAGGTCGA--ATGAGACACCTGGTGATTTTT---T--CTG-TACCAATTC----CTTGAATAATT-AT-A---GAAACATCTGTAA---TAACA-ATA-GACCATAATCCTTTGTA-ATTTATTTTT--CAAA---TTTTTTTA-----TTCATTTTTA-AACGAAAATTGAATTTCATCAA----TTCTAA-ATTGCATACT-GTAGGAAT-TTTC--ATTTTGC-TTTT----TGAG--ATAATTCTGTT--TACCA-TCTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCATCA-TGCTTTTTT-AAT-TGATTCTGGT-AAAA--GGGGCTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGTGGT---CAAATCTG---TACC--AACATCTACAA---ATAGAAAA-TGCACAT---GTATGTTTAT------G---ATA--TGCAA-AAGTCA---------AAT---AGAAA------------------AA----AAAAAC----------A------------CTTTTAAAA---ATGTTAG-TTAAGA--A----A---------TTTCGCATGCAAGAG----TTATCGTTCCTAAAATAGC---TAGC-CC-----AATCCA-CGT-----GG----TTGTTTTTACAAGAAAG-GGGTACATTTGGCAtaatctttcctctaaaagcaattaccttctttcccaataaatgaggaaatgataaagaaagacaaaactatgcaatgttaatatacacgaactatatccttttaagatttagcgcaagctatagaaaataaagctggttaatttgtattgcatttttgctcatgaatgagcagtaaataaaataaaatgcattcttgtaatagagtataaatgttttcaacacaatacatatggcaacatcagtaagatataactacattaaagaaactgaataaaaagaaagaatcatatgcatgtaaacacgatacattttaaaaaaaacagtaatttcaaaaactaataatgaagaccactattgaaattcaatggtataatacaaacagccagatgttgaatacacacaatagtttagataaattaatttgtacatttagcaggggggggggggtgacaaaaatgttacagcacctaattaagtgaccttaaaaatattaaaatatatacgtgtataaaaatagaagtaccatttattttacatgcaatgtaaaaacttatgcatgaaa
gi|7 : AT---GTGTATTAAT------G---ATA--TGCAA-AAGTCA---------AAT---GGAAA------------------AA----AAAAATGGGAAAAGAGA------------CATATAAAA---ATGATAG-TTAAAA--ATGATAGTTCACAAATTCCAAATGAAAGAG----TTATCTTTCCTAAAATAGC---TAGG-CC-----AATTCACCGT-----GGTTATTTATTTTTTTTAGAAAA-GTGTACATTCGGCA
gi|8 : TTAATGTGAA--ATGACAAACCTAGTGATTTTT------CTG-CAACAATCC----CTCC--TAATTTATTA---GATACGTCTGTAA---TGATC-CCA-GACCACAATTCTTTGCC-TATTATTTTT--C------TTTT-------------TTTTTTTAACGGACA-TGAATCTCATCAA----ATTTGA-ATTGCATAAT-TTTGAACT-CCTC--ATTTTGT-ATTtattccttcacctaaaggcaattaccttccttcccagataagtgagaaaaggtacagaactacaccattttgcaagcataaataattcatgtatgtaaaatgaattgtattaca
gi|9 : GA-ATTACGTACT---AAGCCTATATT--ATATTGT-ATTT----TGAG--ATATTACTGTT--TACCA-TG-----AATG--ATAATACAGCAAAGCAAAATT-TTGA-TCATTG-TACTTTTTT-AAT-TATTTCTGA--AAAA--GGGGCATTTTT------GACAATAAACTTCAATTTCTT-GAAA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): AACCTAATATGAAGACCACCCTATAGTTAACATACACATGCAAATCATTGTACATACATACCAAAGCGAATATAAGATAGCCAACATTGATGTTTACTTAGATAAAACTTAATTTGTACATGTGTGGGCAATGTGAAGCGGGGAGCGACGAGAGATGTCTCGACGAAAACAGGGCCAACAAAACCGCACGATGTTACAGCCACCATACATTAATTTAAGTGACCCTTCAAGATATGATAGAAATATAACGTGATATAAAATAGAAGTACTAGTGACCATTTATCTTTACATGCAATGTTAAACAACTTATGCATGCAAT
Unaligned ( gi|11 ): TTTGTACATTTGGCAAGGGGGGGGGGTGGGTGACAAAAATGTTCAGTACAGCACCTAATTAAGGGACCTTTAAGATATTAATAGAATATACGTTAATAAAATAGAAGTACCATTTATTTTACAT
Unaligned ( gi|12 ): ACAAAATCAGTGAATTTCAAAACAAAATGATCACATATTGAGTTCAATGTATACTATATATAGCAATACGCACATATGTTAAGATAAATTAATTTGTACGGGGGGGGGGGGGGCAAAA
Unaligned ( gi|13 ): CATTTTTGCTCATGAATGATGCAGTATAACAAAATAAAATGCATTCTGTAATAGAGCACAATGTTGTCAACAATACATATGCAACAGCAGTAAGATAAATACATTTAGAAGAATCT
Unaligned ( gi|14 ): GGGGGGGGGTTGACAAAATTTTTACAGCATCTAAGTGACCTTCAAGATATTAATAGAATTAAATATACAAGTACCATTTATCTTACATGCAATGTAAAAACTTATGCATGAA
Unaligned ( gi|16 ): GGGTGACAATAATGTTACAGCACCTAATTAATTAAGTGACCTTCAAGATATTTTAAAATAGAATAAATATACGTGTATAGAAGTACCATTTATTTTACATGCAAT
Unaligned ( gi|17 ): TACATACAGCAATAGTGAATACACACATATGATTAGATCAATTAATTTACATTTAGCGGGGGATGCCAAAACTGTTACAGCACCTAATTAAGTGACCTTCA
Unaligned ( gi|18 ): TAATTAAGTGACCTTCAAGATATTAATATAGAATATACGCGTATAAAATAGAAGTATTAGTACCATTTATTTTTAGTACCATTTATTTTACATGCAATG
Alignments
lowQualScore : 222222 1111 1 111 111 111111111 11111 1111 11 1111 11 11 22 111111 111 111 11 111 111 3333333333 11 99999999999999999999999999999999999999999999999999999999999999999999999999 222 7777777777777777 1111 111 22222 22222222222
lowQualScore : 99 1 000000 6 1 4444 0 0 0 8 444 2 111 77 6 99 999999999 66666 3 44 7777 6 11 6 6 99 77 7777 11 1 11 8 6 77 1 5 1 0 5 5 5 55 77 1 666666 5 1 111 444 11 3 444 8 6 111 0 0000000000 11 8 0 00000000000000000000000000000000000000000000000000000000000000000000000000 22 666 6 8 0000000000000000 22 44 1 7777 11 444 8 00000 8 33333333333 3 2 5
lowQualScore : .. . ...... . . .... . . . . ... . ... .. . .. ......... ..... . .. .... . .. . . .. .. .... .. . .. . . .. . . . . . . . .. .. . ...... . . ... ... .. . ... . . ... . .......... .. . . .......................................................................... .. ... . . ................ .. .. . .... .. ... . ..... . ........... . . .
lowQualScore : 22 5 000000 7 0 2222 8 8 6 0 000 5 777 77 7 44 111111111 77777 2 66 0000 7 88 7 7 22 77 0000 00 4 00 0 7 99 4 7 4 6 7 7 7 00 99 7 444444 7 0 777 000 00 8 000 0 7 777 8 2222222222 00 0 8 66666666666666666666666666666666666666666666666666666666666666666666666666 00 000 0 0 8888888888888888 22 66 0 0000 88 000 0 00000 0 44444444444 2 2 7
consensus : TTAAGGTGGA--ATGATACACCTGGTGATTTTT---T--CTG-TANCAATTC----CTTGAATAATTTAT-A---GAAACATCTGTAA---TAACA-NTA-GACCACAATTCTTTGTC-ATTTATTTTT--CATA---TTTTTTTA-----TTCATTTTTTTAACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATACT-GTAGGACT-TCTC--ATTTTGT-CTTT----TGAG--ATATTCCTGTT--TACCA-TGTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCATCA-TACTTTTTT-AAT-TATTTCTGG--AAAA--GGGGCTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGNGGTC---AAATCTG---TACC--AACATCTACAAA---TAGAAAA-TGCACAT-G---TGTATTAAT------G---ATA--TGCAA-AAGTCA---------AAT---AGAAA------------------AAA----AAAAT----------A------------CTTNTAAAA--CATGTTAG-TTAAGA--A--AT---------ATTCCGGATGNAAGAG----TTATCTTTCCTAAAATAGC---TAGG-CC-----AATCCA-CGT-----GG----TTGTTTTTGCGAGAAAA-GGGTACATTTGGCA
Reference ( family-3175 ) : TTAAGGTGGA--ATGATACACCTGGTGATTTTT---T--CTG-TANCAATTC----CTTGAATAATTTAT-A---GAAACATCTGTAA---TAACA-NTA-GACCACAATTCTTTGTC-ATTTATTTTT--CATA---TTTTTTTA-----TTCATTTTTTTAACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATACT-GTAGGACT-TCTC--ATTTTGT-CTTT----TGAG--ATATTCCTGTT--TACCA-TGTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCATCA-TACTTTTTT-AAT-TATTTCTGG--AAAA--GGGGCTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGNGGTC---AAATCTG---TACC--AACATCTACAAA---TAGAAAA-TGCACAT-G---TGTATTAAT------G---ATA--TGCAA-AAGTCA---------AAT---AGAAA------------------AAA----AAAAT----------A------------CTTNTAAAA--CATGTTAG-TTAAGA--A--AT---------ATTCCGGATGNAAGAG----TTATCTTTCCTAAAATAGC---TAGG-CC-----AATCCA-CGT-----GG----TTGTTTTTGCGAGAAAA-GGGTACATTTGGCA
gi|1 : A--ATGATAC-CCTGGAGCTTTTTAGGT---TGCTGGCGGCGCGATGTTTGAATAATTTAT-ATAGGAAACATCTGCTACTTTAACA-TAATGATTTCAATTCTTAGTCTATTTAATTTTACCATAA--TTTTTGTACAGATTTCGTTTTTTTAACGGAA-CTAGATTTCCTAAAAATCTTTTGATATTGCATAATAGTAGGA-T-TCTCCGGTTTTATGCTTTATTTTGAGTAATATATTTGTTATCACCAATCTCCTGATTGCTAAAATACGACAAAACA-TATT-TT-AGTCAACAATACTTTTTTTAATCTATTTCTAGCTAAAA--GGGTATTTTTTCCAGTTAACAATATAGTTCACTTTCTT-GAAAAATGGTGGTTCATAAGGCTGCCATACCCAAACACCT-CAAAAGATAAAAAAGTGCACGC-GGAGTGTAT-AATCCCTCAG---ATCGTTGCAACAAGTCATTGGAGAGTAAA---AGAAA------------------GAACACAAAAAT----------AATAAAATAATTTCTATTAAAC--CGTGTGAGTTTAATAACA--AT---------AT-----ATGCAAATGTGTTTTATGTTTCT----ATCACCTGTAGC-CC-----ATTCCA-CGTATAGAAA----TT-TTTTTGCAAGAAAAGGGGTA-ATTTCGCA
gi|10 : aAAGGTGGA--ATGATACAACTGGTGATTTTT---TTTCTG-TACCAATTC----CTTGAATAATT-AT-A---GAAACATATGTAA---TAACA-ATA-GATCACAATTCTTTGTC-ATTTATTTTT--CATATTTTTTTTTTA-----TTCATGTTGTTatgcatcttctctccatctaaggccagaatacttcctttactcaaggtaagtgaaattgatataagaccaaaatattgcatgtataaatatacaagaataattttatacataagaattgttataaagaacggcagaccttgcgaaaaacaaagctggttttaatatgtatagcattttttgactaataagacaatgaatgcagtatagagaaaatacaaataagatatattgtaatgacggtcgattaatcatgttatcacataaatatgcaacatataagattaaaacatttgaaggactcggaagaaaaaagaaaatcatatgcatcgaacacgaacattttacacacaaatccagatagaattttcacataacataaatgaaaactgaatatggatatattcatgtatatactatagaactaagagagtacaaccacatataatatatagtaccatttggcaaggagggggatggaaaaatgaaacacagcactttaattagttgacgttacaaacgtattaatagatatcgacagatggtataactaatagaagtctgctaccaatttatttttacatgacatgtcaacaacttatacatgaaat
gi|15 : AATG--AAAATACAACAAAACAATAGT-TTTAGCCATCA-TGCTTTTTT-AAT-CATTTCAGGT-AAAA--GGGGCTTTTTT------AGCAATGAACTTCAATTTCTT-GAAAACTGGTGGTC---A
gi|19 : AAGGGGGATTATGAGACACCTGTTGATATTT---T--CTG-TAGCAATTC----CTTGAAT-ACTTAT-A---GAAACAC---TAA----AACACATA-TACTACAA
gi|2 : CATCTCTAA---TTACC-CTA-GATCACAATTCTTTATA-TTTTATATTT--CACA---ATTCTTTA-----TTCATTTT-TTAACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATACT-ATAGGACT-TTTC--ATTTTGT-CTTT----TGAA--ATATCCCTGTT--GACCA-TGTT-TGAATC--ATAATACAACAAAACAATATTCTTTAGTCATCA-TACTTTTTA-AAA-TAGTTCTGG--GAAAATGGGGTTTTTAT------AACATCAAACTTCAATTTCTT-GAAAACTGGAGGTC---AAATCTG---TACC--AACATCTGCAAA---CAGAAAA-TGCACAG-G---AATATTAAT------GATAATA--TACAA-AAA-CA---------ATTTGAAGAAGCCTTGTATATAGCCACATAAA----GAAAT----------G-------------TTATAAAA--AATGTTAG-TTCAGA--A-------------ATTTCGGATGGAAGAG----TAATCTTTCCTTAAATAGC---AAGG-CCTATCGAATCTA-TCT-----GG----CTGTTTTTGTGAGAAAA-GGGTACAGATGGCAa
gi|20 : gTC-CGAATG--AAA-TACAACGAAACAATATT-TTTAGTCACCA-TAATTATTT-AAT-AATTTCTGG--AAAA--GGATTTTTTTT------AACAtatctttttaaataactaaaagcaattagcttctttctcggataagtgagaaatgatacaagaaaaaaaaatacaatgataatgtaatgaaatacttgtacagaattttagtgcagactatagaaattataaagcggggttaatttgtatgcagtgttggttatgagtgaagcagtatgataaaataaagtgcatgctgtcaacaaacatatgtaacatgctacaacagtaggataagtatgttttataagaatataaagaaaaataaaatgttatgcatgaaacacaaacacaaatctgtcaatttcataacaaaacga
gi|21 : AATCTCCTAGAAAACTGGAGATT---AAATTTG---TACA--AACATCTATAAA---TAGAAAA-TGCTCATAG---TGT
gi|22 : aacaTTAAGGTGGA--ATGATGTACCTGGTGATTTTT---T--CTG-TACCAATTC----CTTG
gi|23 : AGAAAA-GGATACATTTGGCA
gi|3 : A---TTTTTTTA-----TTTATTTTTATAACGGAAATTGAATTTCATCAA----TTGTTA-ATGGCATACT-GTAGAAAT-TCTC--ATTTTGT-CTTT----TGAG--GTATTCCTGTT--TATCA-TGTC-TGAATA--AAAATACAACAAACCAATA-T-TTTAGTCAACA-TACTTTTTT-AAT-TATTTCTGGA-AAAA--AGGGATTTATT------AACAATAAACTTCAATTTTTT-GAAAACTGCCGGTT---AAATCTG---TACC--AACATCTACAAA---TAGAAAA-TGCACAT-G---TTTATTAAT------A---ATA--TATAA-AAGTCA---------AAT---TG-AA------------------AAA----AAAAT----------A------------TTGGGAAAAGCCATA-TAT-TTAAGA--A-------------ATTCCAGATGGAAGAG----TTATCTTTCCTAAAATAGC---CAGGCCC-----AATCAA-CGT-----GG----TTGTTTGTGTGAGAAAT-GGGTCCATTTGTCAtattctttcctctaaaggca
gi|4 : TTTTTGCAAGAAAA-GGGTACATTTGGCAtatttttttcatctaaaacaattaccttctttcccagataagtgagaaacgatacagaaagacaaaatatgcaatgctatgtagataataatgtactttttacagaattttagtacagcttataaaaattaaagctggattaattttgcttatgaatgaagcagtgcaataaaataatatgcattccgtcatatagagcataatgttgtcaaaatacatcatgcaacatgctacaacagtaggataaacacatttaaaagattttga
gi|5 : TTAAGGTCGA--ATGAGACACCTGGTGATTTTT---T--CTG-TACCAATTC----CTTGAATAATT-AT-A---GAAACATCTGTAA---TAACA-ATA-GACCATAATCCTTTGTA-ATTTATTTTT--CAAA---TTTTTTTA-----TTCATTTTTA-AACGAAAATTGAATTTCATCAA----TTCTAA-ATTGCATACT-GTAGGAAT-TTTC--ATTTTGC-TTTT----TGAG--ATAATTCTGTT--TACCA-TCTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCATCA-TGCTTTTTT-AAT-TGATTCTGGT-AAAA--GGGGCTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGTGGTC---AAATCTG---TACC--AACATCTACAAA---TAGAAAA-TGCACAT-G---TATGTTTAT------G---ATA--TGCAA-AAGTCA---------AAT---AGAAA------------------AAA----AAAAC----------A------------CTTTTAAAA---ATGTTAG-TTAAGA--A-------------ATTTCGCATGCAAGAG----TTATCGTTCCTAAAATAGC---TAGC-CC-----AATCCA-CGT-----GG----TTGTTTTTACAAGAAAG-GGGTACATTTGGCAtaatctttcctctaaaagcaattaccttctttcccaataaatgaggaaatgataaagaaagacaaaactatgcaatgttaatatacacgaactatatccttttaagatttagcgcaagctatagaaaataaagctggttaatttgtattgcatttttgctcatgaatgagcagtaaataaaataaaatgcattcttgtaatagagtataaatgttttcaacacaatacatatggcaacatcagtaagatataactacattaaagaaactgaataaaaagaaagaatcatatgcatgtaaacacgatacattttaaaaaaaacagtaatttcaaaaactaataatgaagaccactattgaaattcaatggtataatacaaacagccagatgttgaatacacacaatagtttagataaattaatttgtacatttagcaggggggggggggtgacaaaaatgttacagcacctaattaagtgaccttaaaaatattaaaatatatacgtgtataaaaatagaagtaccatttattttacatgcaatgtaaaaacttatgcatgaaa
gi|7 : AT-G---TGTATTAAT------G---ATA--TGCAA-AAGTCA---------AAT---GGAAA------------------AAA----AAAATGGGAAAAGAGA------------CATATAAAA---ATGATAG-TTAAAA--ATGATAGTTCACAAATTCCAAATGAAAGAG----TTATCTTTCCTAAAATAGC---TAGG-CC-----AATTCACCGT-----GGTTATTTATTTTTTTTAGAAAA-GTGTACATTCGGCA
gi|8 : TTAATGTGAA--ATGACAAACCTAGTGATTTTT------CTG-CAACAATCC----CTCC--TAATTTATTA---GATACGTCTGTAA---TGATC-CCA-GACCACAATTCTTTGCC-TATTATTTTT--C------TTTT-------------TTTTTTTAACGGACA-TGAATCTCATCAA----ATTTGA-ATTGCATAAT-TTTGAACT-CCTC--ATTTTGT-ATTtattccttcacctaaaggcaattaccttccttcccagataagtgagaaaaggtacagaactacaccattttgcaagcataaataattcatgtatgtaaaatgaattgtattaca
gi|9 : GA-ATTACGTACT---AAGCCTATATT--ATATTGT-ATTT----TGAG--ATATTACTGTT--TACCA-TG-----AATG--ATAATACAGCAAAGCAAAATT-TTGA-TCATTG-TACTTTTTT-AAT-TATTTCTGA--AAAA--GGGGCATTTTT------GACAATAAACTTCAATTTCTT-GAAA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): AACCTAATATGAAGACCACCCTATAGTTAACATACACATGCAAATCATTGTACATACATACCAAAGCGAATATAAGATAGCCAACATTGATGTTTACTTAGATAAAACTTAATTTGTACATGTGTGGGCAATGTGAAGCGGGGAGCGACGAGAGATGTCTCGACGAAAACAGGGCCAACAAAACCGCACGATGTTACAGCCACCATACATTAATTTAAGTGACCCTTCAAGATATGATAGAAATATAACGTGATATAAAATAGAAGTACTAGTGACCATTTATCTTTACATGCAATGTTAAACAACTTATGCATGCAAT
Unaligned ( gi|11 ): TTTGTACATTTGGCAAGGGGGGGGGGTGGGTGACAAAAATGTTCAGTACAGCACCTAATTAAGGGACCTTTAAGATATTAATAGAATATACGTTAATAAAATAGAAGTACCATTTATTTTACAT
Unaligned ( gi|12 ): ACAAAATCAGTGAATTTCAAAACAAAATGATCACATATTGAGTTCAATGTATACTATATATAGCAATACGCACATATGTTAAGATAAATTAATTTGTACGGGGGGGGGGGGGGCAAAA
Unaligned ( gi|13 ): CATTTTTGCTCATGAATGATGCAGTATAACAAAATAAAATGCATTCTGTAATAGAGCACAATGTTGTCAACAATACATATGCAACAGCAGTAAGATAAATACATTTAGAAGAATCT
Unaligned ( gi|14 ): GGGGGGGGGTTGACAAAATTTTTACAGCATCTAAGTGACCTTCAAGATATTAATAGAATTAAATATACAAGTACCATTTATCTTACATGCAATGTAAAAACTTATGCATGAA
Unaligned ( gi|16 ): GGGTGACAATAATGTTACAGCACCTAATTAATTAAGTGACCTTCAAGATATTTTAAAATAGAATAAATATACGTGTATAGAAGTACCATTTATTTTACATGCAAT
Unaligned ( gi|17 ): TACATACAGCAATAGTGAATACACACATATGATTAGATCAATTAATTTACATTTAGCGGGGGATGCCAAAACTGTTACAGCACCTAATTAAGTGACCTTCA
Unaligned ( gi|18 ): TAATTAAGTGACCTTCAAGATATTAATATAGAATATACGCGTATAAAATAGAAGTATTAGTACCATTTATTTTTAGTACCATTTATTTTACATGCAATG
Alignments
lowQualScore : 222222 1111 1 111 111 111111111 11111 1111 11 1111 11 11 22 111111 111 111 11 111 111 3333333333 11 99999999999999999999999999999999999999999999999999999999999999999999999999 222 7777777777777777 1111 111 22222 22222222222
lowQualScore : 99 1 000000 6 1 4444 0 0 0 8 444 2 111 77 6 99 999999999 66666 3 44 7777 6 11 6 6 99 77 7777 11 1 11 8 6 77 1 5 1 0 5 5 5 55 77 1 666666 5 1 111 444 11 3 444 8 6 111 0 0000000000 11 8 0 00000000000000000000000000000000000000000000000000000000000000000000000000 22 666 6 8 0000000000000000 22 44 1 7777 11 444 8 00000 8 33333333333 3 2 5
lowQualScore : .. . ...... . . .... . . . . ... . ... .. . .. ......... ..... . .. .... . .. . . .. .. .... .. . .. . . .. . . . . . . . .. .. . ...... . . ... ... .. . ... . . ... . .......... .. . . .......................................................................... .. ... . . ................ .. .. . .... .. ... . ..... . ........... . . .
lowQualScore : 22 5 000000 7 0 2222 8 8 6 0 000 5 777 77 7 44 111111111 77777 2 66 0000 7 88 7 7 22 77 0000 00 4 00 0 7 99 4 7 4 6 7 7 7 00 99 7 444444 7 0 777 000 00 8 000 0 7 777 8 2222222222 00 0 8 66666666666666666666666666666666666666666666666666666666666666666666666666 00 000 0 0 8888888888888888 22 66 0 0000 88 000 0 00000 0 44444444444 2 2 7
consensus : TTAAGGTGGA--ATGATACACCTGGTGATTTTT---T--CTG-TANCAATTC----CTTGAATAATTTAT-A---GAAACATCTGTAA---TAACA-NTA-GACCACAATTCTTTGTC-ATTTATTTTT--CATA---TTTTTTTA-----TTCATTTTTTTAACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATACT-GTAGGACT-TCTC--ATTTTGT-CTTT----TGAG--ATATTCCTGTT--TACCA-TGTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCATCA-TACTTTTTT-AAT-TATTTCTGG--AAAA--GGGGCTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGNGGTC---AAATCTG---TACC--AACATCTACAAA---TAGAAAA-TGCACAT-G---TGTATTAAT------G---ATA--TGCAA-AAGTCA---------AAT---AGAAA------------------AAA----AAAAT----------A------------CTTNTAAAA--CATGTTAG-TTAAGA--A--AT---------ATTCCGGATGNAAGAG----TTATCTTTCCTAAAATAGC---TAGG-CC-----AATCCA-CGT-----GG----TTGTTTTTGCGAGAAAA-GGGTACATTTGGCA
Reference ( family-3175 ) : TTAAGGTGGA--ATGATACACCTGGTGATTTTT---T--CTG-TANCAATTC----CTTGAATAATTTAT-A---GAAACATCTGTAA---TAACA-NTA-GACCACAATTCTTTGTC-ATTTATTTTT--CATA---TTTTTTTA-----TTCATTTTTTTAACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATACT-GTAGGACT-TCTC--ATTTTGT-CTTT----TGAG--ATATTCCTGTT--TACCA-TGTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCATCA-TACTTTTTT-AAT-TATTTCTGG--AAAA--GGGGCTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGNGGTC---AAATCTG---TACC--AACATCTACAAA---TAGAAAA-TGCACAT-G---TGTATTAAT------G---ATA--TGCAA-AAGTCA---------AAT---AGAAA------------------AAA----AAAAT----------A------------CTTNTAAAA--CATGTTAG-TTAAGA--A--AT---------ATTCCGGATGNAAGAG----TTATCTTTCCTAAAATAGC---TAGG-CC-----AATCCA-CGT-----GG----TTGTTTTTGCGAGAAAA-GGGTACATTTGGCA
gi|1 : A--ATGATAC-CCTGGAGCTTTTTAGGT---TGCTGGCGGCGCGATGTTTGAATAATTTAT-ATAGGAAACATCTGCTACTTTAACA-TAATGATTTCAATTCTTAGTCTATTTAATTTTACCATAA--TTTTTGTACAGATTTCGTTTTTTTAACGGAA-CTAGATTTCCTAAAAATCTTTTGATATTGCATAATAGTAGGA-T-TCTCCGGTTTTATGCTTTATTTTGAGTAATATATTTGTTATCACCAATCTCCTGATTGCTAAAATACGACAAAACA-TATT-TT-AGTCAACAATACTTTTTTTAATCTATTTCTAGCTAAAA--GGGTATTTTTTCCAGTTAACAATATAGTTCACTTTCTT-GAAAAATGGTGGTTCATAAGGCTGCCATACCCAAACACCT-CAAAAGATAAAAAAGTGCACGC-GGAGTGTAT-AATCCCTCAG---ATCGTTGCAACAAGTCATTGGAGAGTAAA---AGAAA------------------GAACACAAAAAT----------AATAAAATAATTTCTATTAAAC--CGTGTGAGTTTAATAACA--AT---------AT-----ATGCAAATGTGTTTTATGTTTCT----ATCACCTGTAGC-CC-----ATTCCA-CGTATAGAAA----TT-TTTTTGCAAGAAAAGGGGTA-ATTTCGCA
gi|10 : aAAGGTGGA--ATGATACAACTGGTGATTTTT---TTTCTG-TACCAATTC----CTTGAATAATT-AT-A---GAAACATATGTAA---TAACA-ATA-GATCACAATTCTTTGTC-ATTTATTTTT--CATATTTTTTTTTTA-----TTCATGTTGTTatgcatcttctctccatctaaggccagaatacttcctttactcaaggtaagtgaaattgatataagaccaaaatattgcatgtataaatatacaagaataattttatacataagaattgttataaagaacggcagaccttgcgaaaaacaaagctggttttaatatgtatagcattttttgactaataagacaatgaatgcagtatagagaaaatacaaataagatatattgtaatgacggtcgattaatcatgttatcacataaatatgcaacatataagattaaaacatttgaaggactcggaagaaaaaagaaaatcatatgcatcgaacacgaacattttacacacaaatccagatagaattttcacataacataaatgaaaactgaatatggatatattcatgtatatactatagaactaagagagtacaaccacatataatatatagtaccatttggcaaggagggggatggaaaaatgaaacacagcactttaattagttgacgttacaaacgtattaatagatatcgacagatggtataactaatagaagtctgctaccaatttatttttacatgacatgtcaacaacttatacatgaaat
gi|15 : AATG--AAAATACAACAAAACAATAGT-TTTAGCCATCA-TGCTTTTTT-AAT-CATTTCAGGT-AAAA--GGGGCTTTTTT------AGCAATGAACTTCAATTTCTT-GAAAACTGGTGGTC---A
gi|19 : AAGGGGGATTATGAGACACCTGTTGATATTT---T--CTG-TAGCAATTC----CTTGAAT-ACTTAT-A---GAAACAC---TAA----AACACATA-TACTACAA
gi|2 : CATCTCTAA---TTACC-CTA-GATCACAATTCTTTATA-TTTTATATTT--CACA---ATTCTTTA-----TTCATTTT-TTAACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATACT-ATAGGACT-TTTC--ATTTTGT-CTTT----TGAA--ATATCCCTGTT--GACCA-TGTT-TGAATC--ATAATACAACAAAACAATATTCTTTAGTCATCA-TACTTTTTA-AAA-TAGTTCTGG--GAAAATGGGGTTTTTAT------AACATCAAACTTCAATTTCTT-GAAAACTGGAGGTC---AAATCTG---TACC--AACATCTGCAAA---CAGAAAA-TGCACAG-G---AATATTAAT------GATAATA--TACAA-AAA-CA---------ATTTGAAGAAGCCTTGTATATAGCCACATAAA----GAAAT----------G-------------TTATAAAA--AATGTTAG-TTCAGA--A-------------ATTTCGGATGGAAGAG----TAATCTTTCCTTAAATAGC---AAGG-CCTATCGAATCTA-TCT-----GG----CTGTTTTTGTGAGAAAA-GGGTACAGATGGCAa
gi|20 : gTC-CGAATG--AAA-TACAACGAAACAATATT-TTTAGTCACCA-TAATTATTT-AAT-AATTTCTGG--AAAA--GGATTTTTTTT------AACAtatctttttaaataactaaaagcaattagcttctttctcggataagtgagaaatgatacaagaaaaaaaaatacaatgataatgtaatgaaatacttgtacagaattttagtgcagactatagaaattataaagcggggttaatttgtatgcagtgttggttatgagtgaagcagtatgataaaataaagtgcatgctgtcaacaaacatatgtaacatgctacaacagtaggataagtatgttttataagaatataaagaaaaataaaatgttatgcatgaaacacaaacacaaatctgtcaatttcataacaaaacga
gi|21 : AATCTCCTAGAAAACTGGAGATT---AAATTTG---TACA--AACATCTATAAA---TAGAAAA-TGCTCATAG---TGT
gi|22 : aacaTTAAGGTGGA--ATGATGTACCTGGTGATTTTT---T--CTG-TACCAATTC----CTTG
gi|23 : AGAAAA-GGATACATTTGGCA
gi|3 : A---TTTTTTTA-----TTTATTTTTATAACGGAAATTGAATTTCATCAA----TTGTTA-ATGGCATACT-GTAGAAAT-TCTC--ATTTTGT-CTTT----TGAG--GTATTCCTGTT--TATCA-TGTC-TGAATA--AAAATACAACAAACCAATA-T-TTTAGTCAACA-TACTTTTTT-AAT-TATTTCTGGA-AAAA--AGGGATTTATT------AACAATAAACTTCAATTTTTT-GAAAACTGCCGGTT---AAATCTG---TACC--AACATCTACAAA---TAGAAAA-TGCACAT-G---TTTATTAAT------A---ATA--TATAA-AAGTCA---------AAT---TG-AA------------------AAA----AAAAT----------A------------TTGGGAAAAGCCATA-TAT-TTAAGA--A-------------ATTCCAGATGGAAGAG----TTATCTTTCCTAAAATAGC---CAGGCCC-----AATCAA-CGT-----GG----TTGTTTGTGTGAGAAAT-GGGTCCATTTGTCAtattctttcctctaaaggca
gi|4 : TTTTTGCAAGAAAA-GGGTACATTTGGCAtatttttttcatctaaaacaattaccttctttcccagataagtgagaaacgatacagaaagacaaaatatgcaatgctatgtagataataatgtactttttacagaattttagtacagcttataaaaattaaagctggattaattttgcttatgaatgaagcagtgcaataaaataatatgcattccgtcatatagagcataatgttgtcaaaatacatcatgcaacatgctacaacagtaggataaacacatttaaaagattttga
gi|5 : TTAAGGTCGA--ATGAGACACCTGGTGATTTTT---T--CTG-TACCAATTC----CTTGAATAATT-AT-A---GAAACATCTGTAA---TAACA-ATA-GACCATAATCCTTTGTA-ATTTATTTTT--CAAA---TTTTTTTA-----TTCATTTTTA-AACGAAAATTGAATTTCATCAA----TTCTAA-ATTGCATACT-GTAGGAAT-TTTC--ATTTTGC-TTTT----TGAG--ATAATTCTGTT--TACCA-TCTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCATCA-TGCTTTTTT-AAT-TGATTCTGGT-AAAA--GGGGCTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGTGGTC---AAATCTG---TACC--AACATCTACAAA---TAGAAAA-TGCACAT-G---TATGTTTAT------G---ATA--TGCAA-AAGTCA---------AAT---AGAAA------------------AAA----AAAAC----------A------------CTTTTAAAA---ATGTTAG-TTAAGA--A-------------ATTTCGCATGCAAGAG----TTATCGTTCCTAAAATAGC---TAGC-CC-----AATCCA-CGT-----GG----TTGTTTTTACAAGAAAG-GGGTACATTTGGCAtaatctttcctctaaaagcaattaccttctttcccaataaatgaggaaatgataaagaaagacaaaactatgcaatgttaatatacacgaactatatccttttaagatttagcgcaagctatagaaaataaagctggttaatttgtattgcatttttgctcatgaatgagcagtaaataaaataaaatgcattcttgtaatagagtataaatgttttcaacacaatacatatggcaacatcagtaagatataactacattaaagaaactgaataaaaagaaagaatcatatgcatgtaaacacgatacattttaaaaaaaacagtaatttcaaaaactaataatgaagaccactattgaaattcaatggtataatacaaacagccagatgttgaatacacacaatagtttagataaattaatttgtacatttagcaggggggggggggtgacaaaaatgttacagcacctaattaagtgaccttaaaaatattaaaatatatacgtgtataaaaatagaagtaccatttattttacatgcaatgtaaaaacttatgcatgaaa
gi|7 : AT-G---TGTATTAAT------G---ATA--TGCAA-AAGTCA---------AAT---GGAAA------------------AAA----AAAATGGGAAAAGAGA------------CATATAAAA---ATGATAG-TTAAAA--ATGATAGTTCACAAATTCCAAATGAAAGAG----TTATCTTTCCTAAAATAGC---TAGG-CC-----AATTCACCGT-----GGTTATTTATTTTTTTTAGAAAA-GTGTACATTCGGCA
gi|8 : TTAATGTGAA--ATGACAAACCTAGTGATTTTT------CTG-CAACAATCC----CTCC--TAATTTATTA---GATACGTCTGTAA---TGATC-CCA-GACCACAATTCTTTGCC-TATTATTTTT--C------TTTT-------------TTTTTTTAACGGACA-TGAATCTCATCAA----ATTTGA-ATTGCATAAT-TTTGAACT-CCTC--ATTTTGT-ATTtattccttcacctaaaggcaattaccttccttcccagataagtgagaaaaggtacagaactacaccattttgcaagcataaataattcatgtatgtaaaatgaattgtattaca
gi|9 : GA-ATTACGTACT---AAGCCTATATT--ATATTGT-ATTT----TGAG--ATATTACTGTT--TACCA-TG-----AATG--ATAATACAGCAAAGCAAAATT-TTGA-TCATTG-TACTTTTTT-AAT-TATTTCTGA--AAAA--GGGGCATTTTT------GACAATAAACTTCAATTTCTT-GAAA
blockSeqs : TT T TTT . C . T T . A . CA . A CATATTT . G AT . . A C A . C . . C . . . . G C T . . . T AT C . A T . . . G . . A . GATA . . ATTTGAAGAAGCCTTGTATATAGCCACATAAAGAAATG TA GCC T . ATGATAGTTCACAA TT GG G . TT . C TATCG C GGTTAT G G .
blockSeqs : . G T . G . T . . C . A . T CACA . T AT . . G A . . C . . C . . . . T . T . . . A . T . . A . . . A . . . . A . . AATGGAAAAAAAAAATGGGAAAAGAGAC GG A T . A TC AG G . TA . . . . GG G G .
blockSeqs : . T T . C . . . . C . C . A CAAA . T AT . . G A . . T . . T . . . . T . T . . . T . T . . A . . . A . . . . G . . AATAGAAAAAAAAAACAC TT . A . A TT GC C . TA . . . . GG G A .
blockSeqs : . G T . C . . . . C . A . T C . T A . . T C . . A . . A . . . . T . T . . . . . A . . C . . . A . . . . G . . AATTGAAAAAAAAATAT TA . . . A TC AA A . TA . . . . GG A A .
blockSeqs : . C . . A . . . C . . . . . C . . A . . T . T . . . . . C . . T . . . T .
blockSeqs : . . . G . . . . . C . . .
blockSeqCons : T***** **** *** *** N* CAA****** ***** AT **** G* ** N* **** ** ** ** T* ****** *** *** ** *** *** G********* ** G** A*************** TC GG **** TA *** GG*********
originalCons : TTAAGGTGGA--ATGATACACCTGGTGATTTTT---T--CTG-TANCAATTC----CTTGAATAATTTAT-A---GAAACATCTGTAA---TAACA-NTA-GACCACAATTCTTTGTC-ATTTATTTTT--CATA---TTTTTTTA-----TTCATTTTTTTAACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATACT-GTAGGACT-TCTC--ATTTTGT-CTTT----TGAG--ATATTCCTGTT--TACCA-TGTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCATCA-TACTTTTTT-AAT-TATTTCTGG--AAAA--GGGGCTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGNGGTC---AAATCTG---TACC--AACATCTACAAA---TAGAAAA-TGCACAT-G---TGTATTAAT------G---ATA--TGCAA-AAGTCA---------AAT---AGAAA------------------AAA----AAAAT----------A------------CTTNTAAAA--CATGTTAG-TTAAGA--A--AT---------ATTCCGGATGNAAGAG----TTATCTTTCCTAAAATAGC---TAGG-CC-----AATCCA-CGT-----GG----TTGTTTTTGCGAGAAAA-GGGTACATTTGGCA
finalCons : TTAAGGTGGA--ATGATACACCTGGTGATTTTTT-----CTG-TANCAATTC----CTTGAATAATTTAT-A---GAAACATCTGTAA---TAACA-NTA-GACCACAATTCTTTGTCN-TTTATTTTTCAA------TTTTTTTA-----TTCATTTTTTTAACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATACTG-TAGGACT-TCTC--ATTTTGTN-TTT----TGAG--ATATTCCTGTT--TACCA-TGTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCATCA-TACTTTTTT-AAT-TATTTCTGGT-AAAA--GGGGCTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGNGGTC---AAATCTG---TACC--AACATCTACAAA---TAGAAAA-TGCACAT-G---TGTATTAATG---------ATA--TGCAA-AAGTCA---------AAT---AGAAA------------------AAA----AAAAT----------A------------CTTNTAAAAG--ATGTTAG-TTAAGAA---------------ATTCCGGATGNAAGAG----TTATCTTTCCTAAAATAGC---TAGG-CC-----AATCCA-CGTGG---------TTGTTTTTGCGAGAAAA-GGGTACATTTGGCA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): AACCTAATATGAAGACCACCCTATAGTTAACATACACATGCAAATCATTGTACATACATACCAAAGCGAATATAAGATAGCCAACATTGATGTTTACTTAGATAAAACTTAATTTGTACATGTGTGGGCAATGTGAAGCGGGGAGCGACGAGAGATGTCTCGACGAAAACAGGGCCAACAAAACCGCACGATGTTACAGCCACCATACATTAATTTAAGTGACCCTTCAAGATATGATAGAAATATAACGTGATATAAAATAGAAGTACTAGTGACCATTTATCTTTACATGCAATGTTAAACAACTTATGCATGCAAT
Unaligned ( gi|11 ): TTTGTACATTTGGCAAGGGGGGGGGGTGGGTGACAAAAATGTTCAGTACAGCACCTAATTAAGGGACCTTTAAGATATTAATAGAATATACGTTAATAAAATAGAAGTACCATTTATTTTACAT
Unaligned ( gi|12 ): ACAAAATCAGTGAATTTCAAAACAAAATGATCACATATTGAGTTCAATGTATACTATATATAGCAATACGCACATATGTTAAGATAAATTAATTTGTACGGGGGGGGGGGGGGCAAAA
Unaligned ( gi|13 ): CATTTTTGCTCATGAATGATGCAGTATAACAAAATAAAATGCATTCTGTAATAGAGCACAATGTTGTCAACAATACATATGCAACAGCAGTAAGATAAATACATTTAGAAGAATCT
Unaligned ( gi|14 ): GGGGGGGGGTTGACAAAATTTTTACAGCATCTAAGTGACCTTCAAGATATTAATAGAATTAAATATACAAGTACCATTTATCTTACATGCAATGTAAAAACTTATGCATGAA
Unaligned ( gi|16 ): GGGTGACAATAATGTTACAGCACCTAATTAATTAAGTGACCTTCAAGATATTTTAAAATAGAATAAATATACGTGTATAGAAGTACCATTTATTTTACATGCAAT
Unaligned ( gi|17 ): TACATACAGCAATAGTGAATACACACATATGATTAGATCAATTAATTTACATTTAGCGGGGGATGCCAAAACTGTTACAGCACCTAATTAAGTGACCTTCA
Unaligned ( gi|18 ): TAATTAAGTGACCTTCAAGATATTAATATAGAATATACGCGTATAAAATAGAAGTATTAGTACCATTTATTTTTAGTACCATTTATTTTACATGCAATG
Alignments
lowQualScore : 222222 1111 1 111 111 333333333333 11111 1111 11 111111 11 11 11 111111 111 111 11 111 111 3333333333 11 88888888888888888888888888888888888888888888888888888888888888888888888888888 1 6666666666666 1111 111 22222 22222222222
lowQualScore : 99 1 000000 6 1 4444 0 0 0 8 444 2 111 77 6 99 999999999999 66666 7 0 0 7777 6 11 6 6 99 777777 11 1 11 8 6 77 5 8 0 5 5 5 77 5 1 666666 5 1 111 444 11 3 444 8 888 0 0000000000 11 8 0 88888888888888888888888888888888888888888888888888888888888888888888888888888 8 8 8 1111111111111 22 44 1 7777 11 444 8 00000 8 33333333333 3 2 5
lowQualScore : .. . ...... . . .... . . . . ... . ... .. . .. ............ ..... . . . .... . .. . . .. ...... .. . .. . . .. . . . . . . .. . . ...... . . ... ... .. . ... . ... . .......... .. . . ............................................................................. . . . ............. .. .. . .... .. ... . ..... . ........... . . .
lowQualScore : 22 5 000000 7 0 2222 8 8 6 0 000 5 777 77 7 00 000000000000 77777 3 8 8 0000 7 88 7 7 22 777777 00 4 00 0 7 99 7 4 6 7 7 7 99 7 7 444444 7 0 777 000 00 8 000 0 333 8 2222222222 00 0 8 66666666666666666666666666666666666666666666666666666666666666666666666666666 2 0 0 0000000000000 22 66 0 0000 88 000 0 00000 0 44444444444 2 2 7
consensus : TTAAGGTGGA--ATGATACACCTGGTGATTTTT---T--CTG-TANCAATTC----CTTGAATAATTTAT-A---GAAACATCTGTAA---TAACA-NTA-GACCACAATTCTTTGTCT-TTTATTTTT----C-A-A---TTTTTTTA-----TTCATTTTTTTAACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATACT-GTAGGACT-TCTC--ATTTTGTN-----TTTTGAG--ATATTCCTGTT--TACCA-TGTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCATCA-TACTTTTTT-AAT-TATTTCTGG-TAAAA-GGGGCTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGNGGT---CAAATCTG---TACC--AACATCTACAA---ATAGAAAA-TGCACAT---GTGTATTAAT------G---ATA--TGCAA-AAGTCA---------AAT---AGAAA------------------AAA------------AAAAT----------ACTT----NTAAAA-ATGT-TAG-TTAAGAA--AT---------ATTCCGGATGNAAGAG----TTATCTTTCCTAAAATAGC---TAGG-CC-----AATCCA-CGT-----GG----TTGTTTTTGCGAGAAAA-GGGTACATTTGGCA
Reference ( family-3175 ) : TTAAGGTGGA--ATGATACACCTGGTGATTTTT---T--CTG-TANCAATTC----CTTGAATAATTTAT-A---GAAACATCTGTAA---TAACA-NTA-GACCACAATTCTTTGTCN-TTTATTTTT----C-A-A---TTTTTTTA-----TTCATTTTTTTAACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATACT-GTAGGACT-TCTC--ATTTTGTN-----TTTTGAG--ATATTCCTGTT--TACCA-TGTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCATCA-TACTTTTTT-AAT-TATTTCTGG-TAAAA-GGGGCTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGNGGT---CAAATCTG---TACC--AACATCTACAA---ATAGAAAA-TGCACAT---GTGTATTAAT------G---ATA--TGCAA-AAGTCA---------AAT---AGAAA------------------AAA------------AAAAT----------ACTT----NTAAAAGATGT-TAG-TTAAGAA-------------ATTCCGGATGNAAGAG----TTATCTTTCCTAAAATAGC---TAGG-CC-----AATCCA-CGT-----GG----TTGTTTTTGCGAGAAAA-GGGTACATTTGGCA
gi|1 : A--ATGATAC-CCTGGAGCTTTTTAGGT---TGCTGGCGGCGCGATGTTTGAATAATTTAT-ATAGGAAACATCTGCTACTTTAACA-TAATGATTTCAATTCTTAGTCTATTTAATTTTACCAT-A-A---TTTTTGTACAGATTTCGTTTTTTTAACGGAA-CTAGATTTCCTAAAAATCTTTTGATATTGCATAATAGTAGGA-T-TCTCCGGTTTTATGCTTTATTTTGAGTAATATATTTGTTATCACCAATCTCCTGATTGCTAAAATACGACAAAACA-TATT-TT-AGTCAACAATACTTTTTTTAATCTATTTCTAGCTAAAA-GGGTATTTTTTCCAGTTAACAATATAGTTCACTTTCTT-GAAAAATGGTGGTTCATAAGGCTGCCATACCCAAACACCT-CAAAAGATAAAAAAGTGCACGCGGAGTGTA-TAATCCCTCAG---ATCGTTGCAACAAGTCATTGGAGAGTAAA---AGAAA------------------GAACACAAAAATAATAAAAT----------AATTTCTATTAAACCGTGT-GAGTTTAATAACAAT---------AT-----ATGCAAATGTGTTTTATGTTTCT----ATCACCTGTAGC-CC-----ATTCCA-CGTATAGAAA----TT-TTTTTGCAAGAAAAGGGGTA-ATTTCGCA
gi|10 : aAAGGTGGA--ATGATACAACTGGTGATTTTT---TTTCTG-TACCAATTC----CTTGAATAATT-AT-A---GAAACATATGTAA---TAACA-ATA-GATCACAATTCTTTGTCA-TTTATTTTT----C-ATATTTTTTTTTTA-----TTCATGTTGTTatgcatcttctctccatctaaggccagaatacttcctttactcaaggtaagtgaaattgatataagaccaaaatattgcatgtataaatatacaagaataattttatacataagaattgttataaagaacggcagaccttgcgaaaaacaaagctggttttaatatgtatagcattttttgactaataagacaatgaatgcagtatagagaaaatacaaataagatatattgtaatgacggtcgattaatcatgttatcacataaatatgcaacatataagattaaaacatttgaaggactcggaagaaaaaagaaaatcatatgcatcgaacacgaacattttacacacaaatccagatagaattttcacataacataaatgaaaactgaatatggatatattcatgtatatactatagaactaagagagtacaaccacatataatatatagtaccatttggcaaggagggggatggaaaaatgaaacacagcactttaattagttgacgttacaaacgtattaatagatatcgacagatggtataactaatagaagtctgctaccaatttatttttacatgacatgtcaacaacttatacatgaaat
gi|15 : AATG--AAAATACAACAAAACAATAGT-TTTAGCCATCA-TGCTTTTTT-AAT-CATTTCAGG-TAAAA-GGGGCTTTTTT------AGCAATGAACTTCAATTTCTT-GAAAACTGGTGGT---CA
gi|19 : AAGGGGGATTATGAGACACCTGTTGATATTT---T--CTG-TAGCAATTC----CTTGAAT-ACTTAT-A---GAAACAC---TAA----AACACATA-TACTACAA
gi|2 : CATCTCTAA---TTACC-CTA-GATCACAATTCTTTATAT-TTTATATTT----C-ACA---ATTCTTTA-----TTCA-TTTTTTAACGGAAATTGAATTTCATCAA----TTTTGA-ATTGCATACT-ATAGGACT-TTTC--ATTTTGTC-----TTTTGAA--ATATCCCTGTT--GACCA-TGTT-TGAATC--ATAATACAACAAAACAATATTCTTTAGTCATCA-TACTTTTTA-AAA-TAGTTCTGG-GAAAATGGGGTTTTTAT------AACATCAAACTTCAATTTCTT-GAAAACTGGAGGT---CAAATCTG---TACC--AACATCTGCAA---ACAGAAAA-TGCACAG---GAATATTAAT------GATAATA--TACAA-AAA-CA---------ATTTGAAGAAGCCTTGTATATAGCCACATAAA------------GAAAT----------G-TT----ATAAAAAATGT-TAG-TTCAGAA-------------ATTTCGGATGGAAGAG----TAATCTTTCCTTAAATAGC---AAGG-CCTATCGAATCTA-TCT-----GG----CTGTTTTTGTGAGAAAA-GGGTACAGATGGCAa
gi|20 : gTC-CGAATG--AAA-TACAACGAAACAATATT-TTTAGTCACCA-TAATTATTT-AAT-AATTTCTGG--AAAA-GGATTTTTTTT------AACAtatctttttaaataactaaaagcaattagcttctttctcggataagtgagaaatgatacaagaaaaaaaaatacaatgataatgtaatgaaatacttgtacagaattttagtgcagactatagaaattataaagcggggttaatttgtatgcagtgttggttatgagtgaagcagtatgataaaataaagtgcatgctgtcaacaaacatatgtaacatgctacaacagtaggataagtatgttttataagaatataaagaaaaataaaatgttatgcatgaaacacaaacacaaatctgtcaatttcataacaaaacga
gi|21 : AATCTCCTAGAAAACTGGAGAT---TAAATTTG---TACA--AACATCTATAA---ATAGAAAA-TGCTCATA--GTGT
gi|22 : aacaTTAAGGTGGA--ATGATGTACCTGGTGATTTTT---T--CTG-TACCAATTC----CTTG
gi|23 : AGAAAA-GGATACATTTGGCA
gi|3 : -A---TTTTTTTA-----TTTATTTTTATAACGGAAATTGAATTTCATCAA----TTGTTA-ATGGCATACT-GTAGAAAT-TCTC--ATTTTGTC-----TTTTGAG--GTATTCCTGTT--TATCA-TGTC-TGAATA--AAAATACAACAAACCAATATT-TT-AGTCAACA-TACTTTTTT-AAT-TATTTCTGG-AAAAA-AGGGATTTATT------AACAATAAACTTCAATTTTTT-GAAAACTGCCGGT---TAAATCTG---TACC--AACATCTACAA---ATAGAAAA-TGCACAT---GTTTATTAAT------A---ATA--TATAA-AAGTCA---------AAT---TG-AA------------------AAA------------AAAAT----------ATTG----GGAAAAGCCATATAT-TTAAGAA-------------ATTCCAGATGGAAGAG----TTATCTTTCCTAAAATAGC---CAGGCCC-----AATCAA-CGT-----GG----TTGTTTGTGTGAGAAAT-GGGTCCATTTGTCAtattctttcctctaaaggca
gi|4 : TTTTTGCAAGAAAA-GGGTACATTTGGCAtatttttttcatctaaaacaattaccttctttcccagataagtgagaaacgatacagaaagacaaaatatgcaatgctatgtagataataatgtactttttacagaattttagtacagcttataaaaattaaagctggattaattttgcttatgaatgaagcagtgcaataaaataatatgcattccgtcatatagagcataatgttgtcaaaatacatcatgcaacatgctacaacagtaggataaacacatttaaaagattttga
gi|5 : TTAAGGTCGA--ATGAGACACCTGGTGATTTTT---T--CTG-TACCAATTC----CTTGAATAATT-AT-A---GAAACATCTGTAA---TAACA-ATA-GACCATAATCCTTTGTAA-TTTATTTTT----CAA-A---TTTTTTTA-----TTCA-TTTTTAAACGAAAATTGAATTTCATCAA----TTCTAA-ATTGCATACT-GTAGGAAT-TTTC--ATTTTGCT-----TTTTGAG--ATAATTCTGTT--TACCA-TCTC-TGAATG--AAAATACAACAAAACAATATT-TTTAGTCATCA-TGCTTTTTT-AAT-TGATTCTGG-TAAAA-GGGGCTTTTTT------AACAATAAACTTCAATTTCTT-GAAAACTGGTGGT---CAAATCTG---TACC--AACATCTACAA---ATAGAAAA-TGCACAT---GTATGTTTAT------G---ATA--TGCAA-AAGTCA---------AAT---AGAAA------------------AAA------------AAAAC----------ACTT----TTAAAA-ATGT-TAG-TTAAGAA-------------ATTTCGCATGCAAGAG----TTATCGTTCCTAAAATAGC---TAGC-CC-----AATCCA-CGT-----GG----TTGTTTTTACAAGAAAG-GGGTACATTTGGCAtaatctttcctctaaaagcaattaccttctttcccaataaatgaggaaatgataaagaaagacaaaactatgcaatgttaatatacacgaactatatccttttaagatttagcgcaagctatagaaaataaagctggttaatttgtattgcatttttgctcatgaatgagcagtaaataaaataaaatgcattcttgtaatagagtataaatgttttcaacacaatacatatggcaacatcagtaagatataactacattaaagaaactgaataaaaagaaagaatcatatgcatgtaaacacgatacattttaaaaaaaacagtaatttcaaaaactaataatgaagaccactattgaaattcaatggtataatacaaacagccagatgttgaatacacacaatagtttagataaattaatttgtacatttagcaggggggggggggtgacaaaaatgttacagcacctaattaagtgaccttaaaaatattaaaatatatacgtgtataaaaatagaagtaccatttattttacatgcaatgtaaaaacttatgcatgaaa
gi|7 : AT---GTGTATTAAT------G---ATA--TGCAA-AAGTCA---------AAT---GGAAA------------------AAA------------AAAATGGGAAAAGAGACAT----ATAAAA-ATGA-TAG-TTAAAAATGATAGTTCACAAATTCCAAATGAAAGAG----TTATCTTTCCTAAAATAGC---TAGG-CC-----AATTCACCGT-----GGTTATTTATTTTTTTTAGAAAA-GTGTACATTCGGCA
gi|8 : TTAATGTGAA--ATGACAAACCTAGTGATTTTT------CTG-CAACAATCC----CTCC--TAATTTATTA---GATACGTCTGTAA---TGATC-CCA-GACCACAATTCTTTGCCT-ATTATTTTT----C----------TTTT----------TTTTTTTAACGGACAT-GAATCTCATCAA----ATTTGA-ATTGCATAAT-TTTGAACT-CCTC--ATTTTGTA-----TTtattccttcacctaaaggcaattaccttccttcccagataagtgagaaaaggtacagaactacaccattttgcaagcataaataattcatgtatgtaaaatgaattgtattaca
gi|9 : GA-ATTACGTACT---AAGCCTATATT--ATATTGTA-----TTTTGAG--ATATTACTGTT--TACCA-TG-----AATG--ATAATACAGCAAAGCAAAATT-TTGA-TCATTG-TACTTTTTT-AAT-TATTTCTGA--AAAA-GGGGCATTTTT------GACAATAAACTTCAATTTCTT-GAAA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): AACCTAATATGAAGACCACCCTATAGTTAACATACACATGCAAATCATTGTACATACATACCAAAGCGAATATAAGATAGCCAACATTGATGTTTACTTAGATAAAACTTAATTTGTACATGTGTGGGCAATGTGAAGCGGGGAGCGACGAGAGATGTCTCGACGAAAACAGGGCCAACAAAACCGCACGATGTTACAGCCACCATACATTAATTTAAGTGACCCTTCAAGATATGATAGAAATATAACGTGATATAAAATAGAAGTACTAGTGACCATTTATCTTTACATGCAATGTTAAACAACTTATGCATGCAAT
Unaligned ( gi|11 ): TTTGTACATTTGGCAAGGGGGGGGGGTGGGTGACAAAAATGTTCAGTACAGCACCTAATTAAGGGACCTTTAAGATATTAATAGAATATACGTTAATAAAATAGAAGTACCATTTATTTTACAT
Unaligned ( gi|12 ): ACAAAATCAGTGAATTTCAAAACAAAATGATCACATATTGAGTTCAATGTATACTATATATAGCAATACGCACATATGTTAAGATAAATTAATTTGTACGGGGGGGGGGGGGGCAAAA
Unaligned ( gi|13 ): CATTTTTGCTCATGAATGATGCAGTATAACAAAATAAAATGCATTCTGTAATAGAGCACAATGTTGTCAACAATACATATGCAACAGCAGTAAGATAAATACATTTAGAAGAATCT
Unaligned ( gi|14 ): GGGGGGGGGTTGACAAAATTTTTACAGCATCTAAGTGACCTTCAAGATATTAATAGAATTAAATATACAAGTACCATTTATCTTACATGCAATGTAAAAACTTATGCATGAA
Unaligned ( gi|16 ): GGGTGACAATAATGTTACAGCACCTAATTAATTAAGTGACCTTCAAGATATTTTAAAATAGAATAAATATACGTGTATAGAAGTACCATTTATTTTACATGCAAT
Unaligned ( gi|17 ): TACATACAGCAATAGTGAATACACACATATGATTAGATCAATTAATTTACATTTAGCGGGGGATGCCAAAACTGTTACAGCACCTAATTAAGTGACCTTCA
Unaligned ( gi|18 ): TAATTAAGTGACCTTCAAGATATTAATATAGAATATACGCGTATAAAATAGAAGTATTAGTACCATTTATTTTTAGTACCATTTATTTTACATGCAATG