lowQualScore : 1 222222 1111 777777777777777777 1 1111111111111 1 22222222 1111 1111111111111111 5555555555555555555555555555555555555555555555555555555555555555 1111111111111 11111111 111 11111 66666
lowQualScore : 0 0 444444 111 8888 55 333333333333333333 4 3 4 66 6 2 33 2222222222222 22 4 4 1 666 00000000 2 2 0 33 0 5555 2 2 7 4444 2 33 1 1 1 7777777777777777 44 3 1 333 22222 1 3333333 2222 9999999999999999999999999999999999999999999999999999999999999999 0000000000000 33 222 33333 1 2 1 11111111 1 8888 4 2 555 66 00000 55555 6
lowQualScore : . . ...... ... .... .. .................. . . . .. . . .. ............. .. . . . ... ........ . . . .. . .... . . . .... . .. . . . ................ .. . . ... ..... . ....... .... ................................................................ ............. .. ... ..... . . . ........ . .... . . ... .. ..... ..... .
lowQualScore : 7 5 555555 888 2222 77 000000000000000000 7 3 5 33 6 4 22 6666666666666 66 4 4 1 111 99999999 5 5 1 44 2 0000 5 5 3 7777 4 11 6 6 5 0000000000000000 22 1 1 555 66666 1 6666666 4444 8888888888888888888888888888888888888888888888888888888888888888 3333333333333 11 333 22222 3 6 3 00000000 3 9999 2 1 888 33 55555 00000 7
consensus : ATTAAAACGGCAATATTGTACAATTTACCTTG----CGCGTAACCAGAATAAACACTGAA--CA--------ATGAAATTTATAAG-GGGG--TCATTATTCTA-C--AGG------------G-GTCA-T-T-T---T-CTT----CACG-TAGAA-TGTGCTCATT--TTTATG----AAAAT-GA-CACTTTTT-C--TTCAGGCAA--AAGGGT-C-A-TTT----------------TTC--T-AC-GT---AG-----AATAATG-A-------C----C-----------------GGGGG-----G-------T--CA--AT-T--TCT----------T--ACGT---A---------G--AA---A-----A-A-T-GA--------C-CCC--C-GG-TC--ATTATTCT--ACGG----GGGTCAT-T-ATTCTTCTTTA
Reference ( gi|10 ) : ATTAAAATGGCAATATTGTACAGTCTACCTTG----CACATAACCAGGATAAACACTGAACCCA--------ATGACATTTGTAAG-GGTG--TCACTATTCTA-C--AGG------------G-GTCA-T-T-T---T-CGT----CACG-TAGAA-TGTGCTCATT--TTTATG----AAAAT-GA-CACCTTTT-C--TTCAGGCAA--AAGGGT-C-A-TTT----------------TTC--T-AC-GT---AG-----AATAATG-A-------C----C-----------------GGAGG-----G-------T--CA--AT-T--TCT----------T--ACGT---A---------G--AA---A-----A-A-T-GA--------C-CTT--C-GG-TC--TTTATTCT--ACGG----AGG-----T-ATTCTTCTTTA
gi|12 : ATAAAAACTGCAATATTGTCCAGTTTACCTGG----CATGTAACCAGAATAAATACTGAA-----------------ATATATAAG-GG-A--TCATTATTCTA-C--AGA------------G-GCCA-T-T-TA--T-CTT----CACG-TAGAA-TGTGCCCATT--TTTATG----AAAAT-GA-CA------------------------------A-TTT----------------TT---T-AC-GT---AG-----AATAATG-A-------C----C-----------------GGGGG-----A-------T------AT-T--TTTC---------T--ACGT---C---------G--AA---A-----A-A-T-GACAC-----C-CCC--C-AA-TC--ATTTTTCT--GCTG----GGGTCAT-T-GTTCCTCTTT
gi|2 : aATTAAAATGGCAATACTGTACAATCTACCTTA----CGCATAACCAG--------CTGAAT-----------A-GAAATTCATAAG-GGGG--TCATTATTCTA-C--AGG------------G-GTCA-T-T-TAAAT---T----CACG-TAGAA-TGTGCTCATT--TTTATG----AAAAT-GA-CACTTTTTCC--TTCA-GCAA--AAGGGC-C-A-
gi|9 : aatatatctcgaaatatcttcaatatgttctcactcgtaataaagagatataactcgttgtgatgagataacgatatcggtgtaaataaatgaaaagtaaaaaaaaaaaagaaagtttttttagtcattttttgactttttaaaagttgattttaatagaaatgatagttactttctctttagtgtaTTAAAATGGCAATATTGTACAAT------------------ACCAGAATAAACACTGA---CA--------ATGGAATTTAAAAGTGGCGGTTCATTATTCTA-C--AGG------------G--TCT-T-T-T---T-CTTTCTTCACG-TAGAA-TGGGCTCATT--TTTATG----AAAAT-GA-CACTTTTT-C--TTCAGGCAC--AAAGGTAC-ATTTT----------------TTC--T----GT---AA-----GAT--TG-A-------G----CGGGGGGGGGGGGGGGGGGGGGG-----G-------G--CA--TT-T--TTC----------T--GTGT---A---------GC-AA---A-----A-ACT-GA--------C-C----C-CG-TC--ATTATTCT---CGG----GGGTCAT-T-GTTCTTCTTTataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataatgacagggggtcattttaaatgaccttccggtcattattctacatgggtcattattcttctttaca
gi|11 : tTTTACCTTGTGAACACATAACCAG----AAC---GAA--CA--------ATGGAATTCATAAA-AGTG--TCAT---------------------------------T-T-T---T-CTT----TACG-TAGAA-TGTGC
gi|12 : cgcgtatcttgaaatagcttcaatgtgttttcactcataataacgagataactcgttgttatgcaaaacaatatcgtagtaaataaatgaaaaaaaaaatatttgaactttttattcattttaagttgattttaatagaagtaataacgttacAAGAGGAACAATGACCCCAGCAGAAAAATGA---TTG-GGG-GGTG--TCATTTTTCGA-CGTAGAAAAATATCCCCCG-GTCA-T-TAT---T-C------TACG-TAAAA-AATTGTCATT--TTCATA----AAAATGGG-CACATTCTAC--GTGAAGATA--AATGGC-C-----------------------TC--T----GT---AG-----AATAATG-A-------T----C-----------------
gi|8 : aataaaaactgcaatattgtccagtttacctggcatgtaaccagaataaatactgaaatatataaggGAATAAATAATGAAAC-A--------ATGAAATTTATAAG-GG----------------------------------G-GTCA-T-TAT---T-C------CAC------A-CGTGCTCATT--TTTATG----AAAAT-GA-AATTTTTT-C--TTCAGGCAA--AAAGGC-A-A-CCT----------------TTC--T-AC-GT---AG-----AAAAATT-A-------C----C-------------------CTG-----G-------T--CA--TTAT--TCT----------T--t
gi|13 : ttcaatgtgttttcacagaaaataactcgggttgagagaactatatcagtgtaaagaaataaaaagtaaaaaaaaaaaaaagcccatcttcttaatcatttttttttttactataagttgatttcaatagaaatgatcaagtaactttctgtttactgtaattaaaatgacaatATTCATAAG-GGGG--TCATTATTCTA-C--AGG------------G-GTCA-T-TAT---T-CTT----CACG-TGGAA-TGTGCTTA-T--TTTATC----AAAAT-GA-CACTTTTT-C--TTCAGGTAA--AAGGGT-A-A-TTT----------------TTC--T-AC-GT---AG-----AATAATG-A-------C----C-----------------GGGGG-----GGGGGGGAT--CATTAT-T--TTTTTC-------T--ACGT---A---------G--AA---A-----T-A-T-GA--------CTCCA--C-GG-TC--ATTATTCT--ACGG-----GGTTCATT-ATTCTTCTTTAcgggggccatt
gi|20 : aATTTATAAG-GGGG---CATTATTCTA-C--AGC------------G-GTCA-TAT-T---T-CTT----CACG-TGGAA-TGTGCTCATT--TTCATG----GAAAT-GG-CACTTTTT-G--TTCAGGTAA--AATGGA-C-A-TTT----------------TTC--T-AC-GT---AG-----AAT-----------------------------------------------------------------------------------ACGT---A---------G--AG---A-----A-A-T-GA--------C-CCC--C-GG-TC--ATTATTCT--ACCG----GGGTCAT-T-ATTCTTCTTTc
gi|21 : aATTTATAAG-GGGG---CATTATTCTA-C--ACG------------G--TCA-TAT-T---T-CTT----CACG-TGGAA-TGTGCTCATT--TTCATG----GAAAT-GG-CACTTTTT-TG-TTCAGGTAA--AATGGA-C-A-TTT----------------TTC--T-AC-GT---AG-----AAT-----------------------------------------------------------------------------------ACGT----------------AA---G-----A-A-T-GA--------C-C----C-CG-TC--ATTATTCT--ACCG----GGGTCAT-T-ATTCTTCTTTA
gi|16 : ATTTATAAG-GG-G--TCATTATTCTAAC--AGG------------G--TCA-T-T-T---TCCTT----CATG-GTGAA--GTGCTCA-T--TTTATG----AAAAG-GA-CAC--TTT-C--TTCA-GC-G--AAGGAT-C-A-CTT----------------TCT--T-G-------AG-----AATAATGAA-------C----C-----------------GGAGGGGGGCG-------T--CA--TT-T--TC-----------T--ACGT---AGT-------G--AA---A-----A-A-TCGA--------C-C-C--C-GG-TC--AT--TTCT--ATGG----GGGCCAT-T-ATTCTTCT
gi|24 : taATTTATAAG-G-TGA-TCATTATTCTA-C--AGG------------G-GTCATT-T-T---T-CTT----CACG-TAGAA-TGTGCTCATT--TTT-TC----AA---------------------TAGTCAA--AAGGGC-C-A-TTT----------------TTT--TAAC-GT---AG-----AATAATG-A-------C----C-----------------GGA-------A-------T------AT-T--TTT----------T--CCAT-------------GCCCA---A-----A-A-T-TA--------C-CCC--A-GG-TC--ATTATTCg
gi|32 : aATTTATAAG-GGGG--TCATTATTCTA-C--CGG------------G-GTAAAT-T-T---T-CTT----CACG-TGGAA-TGTGCTCATT--TTCATG----AA
gi|25 : G--TCATTATTCTA-C--GGG------------G-GTCA-T-TAT---T-C
gi|31 : tcatttttcttcacgtagaatgtgcatgaaaatgacactttatcttcaggcaaaatggtcatttttccatgcagaataatgatcgggggaggggggggtcattgagatcattttcccgG--TCATTATTCTA-C--AGA------------G-GTCA-T-TAT---T-CTT----Cttt
gi|2 : gggggtcattttttcgacacatataatatactccccg--TCATTATT----------------------G-GCCC-T-T-T---T-GCT----GAAG-GAAAA-AGTG-TCATT--TTCATA----AAAAT-GAGCACATTCTAC--GTGAATTTA--AATGAC-C-----------------------CC--T----GT---AG-----AATAATG-A-------C----C-----------------ttta
gi|18 : aatatatctcgaaatatcttcaatatgttctcactcgtaataaagagatataactcgttgtgatgagataacgatatcggtgtaaataaatgaaaagtaaaaaaaaaaaagaaagtttttttagtcattttttgactttttaaaagttgattttaatagaaatgatagttactttctctttagtgtaattaaaatggcaatactgtacaatctaccttacgcataaccagctgaatagaaattcataaggg-C--AGA------------G-GTCA-T-T-T---T-TATT---CATG-TAGAA-TGTCCTC---------CG-----AAAT-GC-CACTTTTT-CCTTTTAGGCAA--AAGGGT---A-TTT----------------TTC--T-ACGGG---AG-----AATAATT-A-------C----C-----------------GGTGGGGGT-G-------T--CAT-TT-T--TCC----------TAGACTT---A---------G--AA---C-----A-A-C-GA--------C-CTC--C-GA--CGATCTATTCTTGACGG----GCGTCAT-T-ATTCTTCGTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataatgacagggggtcattttaaatgaccttccggtcattattctacatgggtcattattcttctttaca
gi|22 : -C--AGA------------GTGTCA-T-T-T---T---T----CATGATAGAAATGT-CCCATC-------------AAAT--A-CAACTTTTGC--TTTAG-CAACAAAGGGT-C-A-TTT----------------TCT--T-AC-GG---AG-----A-TAATT-A-------C----G-----------------GGGGG-----G-------T--CA---T-T--TCT-------------ACTTG--A---------G--AA---A-----A-A-C-GA--------C-CTC--C-GA-CC--ATCATTCT--ACGGCTCTATA-----T-ATTCTTCGTTA
gi|25 : tTCA-T-T-T---TTCTT----CACG-TAGAA-TGTGC----------ATG----AAAAT-GA-CACTTTAT-C--TTCAGGCAA--AATGGT-C-A-TTT----------------TTC--C-AT-GC---AG-----AATAATG-A-------T----CGGGGGAGG---------GGGGG-----G-------T--C---AT-T---------------------------------------G---A-----G-A-T-CA--------T-TTTCCC-GG-TC--ATTATTCT--ACGG----GGG-----TCATTATTCTTTc
gi|13 : TCATTATTCTACGTAGAAAAAT-TA-C-CCTTTTAC--CTGAAGAAA--AAGTGT-C-A-TTTTGATAAAATAAGCACATTC--C-AC-GTGA-AG-----AATAATG-A-------C----C------------------------------------------------CCT---------------GT---A---------G--AA---T-----A-A-T-GA--------C-C
gi|34 : aattcataagggG----AAAAT-GA-CACTTTTT-C--TACAGACAA--AAGGTT-A-A-TTT----------------TTC--T-AC-GT---AG-----AATAATG-A-------C----T-----------------Gccggggggggggggatcattatttttttctacgtagaaatatgactccacggtcattattctacggggttcattattcttctttac
gi|2 : CCTTTTGC--TGAAGGAAA--AAGTGT-C-A-TTT----------------T-------C-AT---AA-----A--AATG-A-------G----C-----------------A--------------------CA-----T--TC-----------T--ACGT-------------G--AATTTA-----A-A-T-GA--------C-C
gi|11 : aatatatctcgaaatatcttcaatatgttctcactcgtaataaagagatataactcgttgtgatgagataacgatatcggtgtaaataaatgaaaagtaaaaaaaaaaaagaaagtttttttagtcattttttgactttttaaaagttgattttaatagaaatgatagttactttctctttagtgtaattaaaatggcaatactgtacaatctaccttacgcataaccagctgaatagaaattcataagggggtcattattctacagg--TTCA--TAA--AAGTGT-C-A-TTT----------------TTCTTT-AC-GT---AG-----AATgccaataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataatgacagggggtcattttaaatgaccttccggtcattattctacatgggtcattattcttctttaca
gi|8 : cgcgtatcttgaaatagcttcaatgtgttttcactcataataacgagataactcgttgttatgcaaaacaatatcgtagtaaataaatgaaaaaaaaaatatttgaactttttattcattttaagttgattttaatagaagtaataacgttactttaccttgtgaacacataaccagaacgaacaatggaaAGGGT-A-A-TTT----------------TTC--T-AC-GT---AG-----AAgtgc
gi|13 : ttcaatgtgttttcacagaaaataactcgggttgagagaactatatcagtgtaaagaaataaaaagtaaaaaaaaaaaaaagcccatcttcttaatcatttttttttttactataagttgatttcaatagaaatgatcaagtaactttctgtttactgtaattaaaatgacaatgaataaataatgaaacaatgaaatttataagggggtcattattccacacgtgctcatttttatgaaaatgaaattttttcttcaggcaaaaaggcaacctGAGT-C-A-TAT----------------TTC--T-AC-GT---AGAAAAAAATAATG-ATCCCCCCC----C-----------------CCCCG-----G-------T--CA--TT-A--TTC----------T--ACGT---A---------G--AA---A-----A-A-T-TA--------C-CCT--ggtcattattcttcgggggccatt
gi|20 : aattcataagggggtcattattctacaggggtcattattcttcacgtggaatgtgcttattttatcaaaatgacactttttcttcaggtaaaGGGT-C-A-TTTCTCTACGTA-------TTC--T-AC-GT---AG-----AAAAATG-T-------C----C-----------------cacggtcattattctacggggttcattattcttctttac
gi|16 : aatttataagggggcattattctacagcggtcatatttcttcacgtggaatgtgctcattttcatggaaatggcactttttgttcaggtaaaatGGGT-CGA-TTT----------------TTCACT-AC-GT---AG-----AA-AATG-A-------C----ccggtcattattctaccggggtcattattcttcttt
gi|18 : taatttataaggggtcattattctaacagggtcattttccttcatggtgaagtgctcattttatgaaaaggacactttcttcagcgaaggatcactttcttgagaataatgaaccggaggggggcGGT-C-G-TTG----------------TTC--T-AA-GTCTAGG-----AAAAATG-A-------CACCCC-----------------CACCG-----G-------T---A--AT-TATTCT----------C--CCGT---A---------G--AA---A-----A-A-T-AC--------C-CTT--T-TG-CC--Tcggtcatttctatgggggccattattcttctg
gi|22 : cagaggtcatttttattcatgtagaatgtcctccgaaatgccactttttccttttGGT-C-G-TTT----------------TTC--TCAA-GT---AG-----AA--ATG-A-------C----C-----------------CCCCC-----G-------T---A--AT-TA-TCT----------C---CGT---A---------A--GA---A-----A-A-T-GA--------C-CCT--tccgacgatctattcttgacgggcgtcattattcttcgtta
gi|12 : tcagagtgtcatttttcatgatagaaatgtcccatcaaatacaacttttgctttagcaacaaGT-C-A-TTT----------------TTC--G-AC-GT---AG-----AAAAAT--A-------T----C-----------------CCCCG-----G-------T--CA--TT-A--TTC----------T--ACGT---A---------A--AA---A-----A-T-T-Gtccgaccatcattctacggctctatatattcttcgttac
gi|34 : aataaaaactgcaatattgtccagtttacctggcatgtaaccagaataaatactgaaatatataagggatcattattctacagaggccatttatcttcacgtagaatgtgcccatttttatgaaaatga-TTT----------------TTC--T-AC------AG-----A--------------------C-----------------AAAAG-----G-------T--TA--AT-T--TTTC---------T--ACGT---A---------G--AA---T-----A-A-T-GA--------C-accccccaatcatttttctgctggggtcattgttcctcttt
gi|2 : gaaaatgacacC--C-AT-GT---AG-----AATAATG-A-------C----C-----------------GGAAG-----G-------T--C---AT-T--T------------------------------------A---A-----A-A-T-GA--------C-CCC--C-TG-TC--ATTATTtg
gi|13 : aatatatctcgaaatatcttcaatatgttctcactcgtaataaagagatataactcgttgtgatgagataacgatatcggtgtaaataaatgaaaagtaaaaaaaaaaaagaaagtttttttagtcattttttgactttttaaaagttgattttaatagaaatgatagttactttctctttagtgtaattaaaatggcaatactgtacaatctaccttacgcataaccagctgaatagaaattcataagggggtcattattctacaggggtcatttaaattcacgtagaatgtgctcatttttatgaaaatgacactttttccttcagcaaaagggccaataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaC-GT---AG-----AATAATG-A-------C----C-----------------GTGGA-----G-------T--CAT-AT-T--TCT-------------ACGT---A---------G--AA---AAAAATA-A-T-GATCCCCCCCC-CCC--C-GG-TC--ATTATTCT--ACGT----AGgtcattattcttctttaca
gi|16 : aattcataagggggtcattattctacaggggtcattattcttcacgtggaatgtgcttattttatcaaaatgacactttttcttcaggtaaaagggtaatttttC-AT---AG-----AA--ATG-A-------C----C-----------------GG--G-----G-------T--CG--AT-T--TTTCAC-------T--ACGT---A---------G---A---A-----A-A-T-GACGCCCC--C-CTC--C-GGTTC--ATTATTCTC-AAGA----AAG-----TGATCCTTCgggttcattattcttctttac
gi|25 : taatttataaggggtcattattctaacagggtcattttccttcatggtgaagtgctcattttatgaaaaggacactttcttcagcC-GT---AG-----AATAATG-A-------C----C-----------------GGggggccattattcttctg
gi|8 : tcatttttcttcacgtagaatgtgcatgaaaatgacactttatcttcaggcaaaatggtcatttttccatgcagaataatgatcgggggaggggggggtcattgagatcattttcC-GA---AG-----AATAATG-A-------C----C-------------------AGG-----G-------T---A--AT-T--TTTC---------T--ACGT---A---------G--AA---A-----G-G-T-TG--------C-CTT--ggggtcattattcttt
gi|22 : ttcaatgtgttttcacagaaaataactcgggttgagagaactatatcagtgtaaagaaataaaaagtaaaaaaaaaaaaaagcccatcttcttaatcatttttttttttactataagttgatttcaatagaaatgatcaagtaactttctgtttactgtaattaaaatgacaatgaataaataatgaaacaatgaaatttataagggggtcattattccacacgtgctcatttttatgaaaatgaaattttttcttcaggcaaaC-GT---AG-----AATGATG-G-------T----C-----------------GGAGGTC---G-------T--T----T-T--TCT----------C--AAGT---A---------G-------A-----A-A-T-GA--------C-Cggggccatt
gi|12 : tcagagtgtcatttttcatgatagaaatgtcccatcaaatacaacttttgctttagcaacaaagggtcattttcttacggagataattacggggg-GC---AG-----AAAAATG-A-------T----T-----------------GGGGG-----G-------TGTCA--TT-T--TTC----------G--ACGT---A---------G--AA---A-----A-A-T-AT--------C-CCC--C-GG-TC--ATTATTCT--ACGgctctatatattcttcgttac
gi|20 : aataaaaactgcaatattgtccagtttacctggcatgtaaccagaataaatactgaaatatataagggatcattattctacagaggccatttatcttcacgtagaatgtgcccatttttatgaaaatgacaatttttta-GT---AG-----AATAATG-A-------C----C-----------------GG-GG-----G-------T--C---AT-T--TCTCTACGTATTCT--ACGT---A---------G--AA---A-----A-A-T-GT--------C-Ctggggtcattgttcctcttt
gi|21 : aatttataagggggcattattctacagcggtcatatttcttcacgtggaatgtgctcattttcatggaaatggcactttttgttcaggtaaaat-GT---AG-----AATAATG-A-------C------------------------GGG-----G-------T--CA-----T--TCT----------T--ACGT---ATTCTACGTAG--AA---A-----A-A-T-GT--------C-Ccggggtcattattcttcttt
gi|31 : atttataagggggcattattctacacggtcatatttcttcacgtggaatgtgctcattttcatggaaatggcacttttttgttcaggtaaaat-GT---AG-----AATAATG-A-------C----C-----------------GGGGA-----G-------T------AT-A--TTA----------T--ATGTGTCG---------A--AA---A-----A-A-T-GA--------C-Ccggggtcattattcttcttta
gi|9 : ggg---AG-----AATAATG-A-------C------------------------GGG-----G-------T--CA--GT-T--TTTGC--------T--ACAC---A---------G--AA---A-----A-A-T-GC--------C-Cagaggtcattattcttcttta
gi|24 : tttaaaatggcaatattgtacaataccagaataaacactgacaatggaatttaaaagtggcggttcattattctacagggtctttttctttcttcacgtagaatgggctcatttttatgaaaatgacactttttcttcaggcacaaaggtacattttttctgtaagattgagcgggggggggggggggggggggG-----AATAATG-A-------C----C-----------------TG-GG-----G-------T---A--AT-T--TTG----------G--GCAT---G---------G--AA---A-----A-A----A--------T-ATT--CCGG-TC--ATTATTCT--ACGcgggggtcattgttcttcttt
gi|2 : aatttataaggtgatcattattctacaggggtcatttttcttcacgtagaatgtgctcattttttcaatagtcaaaagggccatttttttaa-----AATAATG-A-------C----A-----------------GG-GG-----G-------T--CA--TT-T--T----------------------------------------A-----A-A-T-GA--------C-CTT--CCGG-TC--ATTATTCT--ACAT----GGGTCAT-T-ATTCTTCTTTA
gi|31 : aatatatctcgaaatatcttcaatatgttctcactcgtaataaagagatataactcgttgtgatgagataacgatatcggtgtaaataaatgaaaagtaaaaaaaaaaaagaaagtttttttagtcattttttgactttttaaaagttgattttaatagaaatgatagttactttctctttagtgtaattaaaatggcaatactgtacaatctaccttacgcataaccagctgaatagaaattcataagggggtcattattctacaggggtcatttaaattcacgtagaatgtgctcatttttatgaaaatgacactttttccttcagcaaaagggccaataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGGGG-----G-------T--CA---T-T--TTT----------TCGACAC---A---------T--AT---A-----ATA-T-AC--------T-CCC--C-GG-TC--ATTATTCT--ACAG----AGGTCAT-T-ATTCTTCTTTAca
gi|34 : -----G-------T--CA--TT-A--TTC----------T--ACGT---A---------G--AA---A-----A-ATT-AA--------C-CTT--T-TG-TC--TGTA
20 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): GGTACAGGGCATCATAGAGACAACGTGGACGTGTCCAAATTAAGAAAATCAAGCTTTTTTTTATAAGAGGAAATATTTTATTTCGATTTCTTCCTGTAGGGCAAAAAACGAAACTTTCGACGAAAATGTCGAGATTTTATCTTGATAAATGACATGATATTACATCATCAGGAAAACGCTATTATACAAGGTACACAAGAGCAGGTTTTGGAAAAAGCAGAACTGGGTGATTGGTACACGGTGATGAATCTGGTGGACACCTAATAATAACCAAAAACCCTGAAAAATGCACTAATTGAGAATAAGATTATTCAAAAATGATATATAATCCATTACTATCATGTATGACTCGTATAGACACCAGTACAGCTGTAGTAGAGAAAAAAAAATTAAAGATCGATGTAAGTTCATTTTATGACCAATAGACAGAATTTTCTTAAATAGACGAAATAACTTAATGTGTTTTAATGAGATACATGTAATTCGTTGTGATGAGATAATTATATAT
Unaligned ( gi|3 ): ATCAAGAAGGCTGTATGTTTTTCATAGAAGAAACACCGGTTGTCATTTTTGTCGGCATCGATGGTAAGACTGAAGTTCGCGCGCGAGATCCCTTCATTTTCTCATTCCATTGACATTACTGGTACAGGGATCATAGAGACAACGTGGAAGTGTCCAAGTTTAAGAAAATCAAGCTTTTTCTTTTTTCTGTTTATTAGAAGTAATACTTCATTTCGATTTCTTCCTGTAGGGCAAAAAACGAAACTTTCGACGAAAATGTCGAGATTTTATCTTGATAAATGGCATGATATTGCATCACCAGGAAAACGCTATTATACAATGTACACAAGAGCAGGTTTTGGAAAAAGCAGAACTGGATGATTGGTACACGGTGATGAATCTGGTGGACACCTAATAATCACCAGAACGTTTGAATTAGAACCCTGAAACATGCACTAATTGGGAATAAGATTACCAAAAGGACAATGTATAAATTATGACTCGTAC
Unaligned ( gi|4 ): AGAGCTGGATGGTTATCTGAATCTGGGCCGCACCTAACAATCGCCAAAACGTATGAATTGGATCACCTGTTCAGCCGAGACATGTACTAATTGAAAATAAGATTATCAAAGAATAATACATCCATTACAGCTAATTATAACTCATAGACACCCCCTTCCGTAGAAAAAAAAAACACACCACAAGATCCCCAGTGGCAAGAATTTCTCAAATATAGTTTAGTTATGAACATTGTGGGATGTACTTGCCTGCCCAGTAGTAGAGAAAAAAATCAAAGATAAATGCAAGTTCATTTTAGGACTAATAAACAGAATCAAATAGAGGCTTGCATCTCGAGATAACTTCAATGCGTTTTCACTAGTAATAACGAGATCACTCGTTGTGATGAGATAGCTAGCTATATCGGTGTAAATAAATGAAAAGT
Unaligned ( gi|5 ): CATTGAAACTATAGGCACAGGACATCATTAGACAACATGGACGTGTCCGAGTTTAAAAAAAATAATACTTTTTATTAATAAGAAAAAAATTCTTCATGTAAGTAGAAGAAAGGAAACTTTTGACAAAAATGTAAAGACTTTATCTTGTTAAATTGCATATTACAGCCACAGAAAAACACTCAAACACCACTGCAGGTTTTGAAAAGTACATATCTGGATGATTGTCTTAAACGGGTACACAGTGGGCACCTAGGAATCACCAAACGTTTGAATTAAAACCCTGGTTCAGTTGAAACATACACGTACTATGTCTGCTAAATTTCCAGTAACTGAGAATGAAATTATTACAGAATAATATGTTCATTTGTGCTTTATGATTCATAGATCCGCCACCGTAGAGAAAAACCAAAA
Unaligned ( gi|6 ): GCAGAACTGGATGATTGGTACACGGTGATGAATCTGGTGGACACCTAATAATCACCAGAACGTTTGAATTAGAACCCTGAAACATGCACTAATTGGGAATAAGATTACCAAAAGGACAATGTATAAATTATGACTCGTACAGCCCCCCCCCCCTCCCCATTTCTGTAGAAAAAAAAAACACCACACCACACAGTGACAAGAATTTCACAAATATAGTTTAGTTATGAAATCTTTCAGTATAGCTGTAGTAGAGAAAAAAAAACATTTAAAGATCAACACTTCAATGTGTTTTCACAGAAAATAACTCGGGTTGAGAGAACTATATCAGTGTAAAGAAATAAAAAGTA
Unaligned ( gi|7 ): TTTCTTCTGTCCATTCGTTACTCAAAATTAAAAGTTCTTTTTTGCTCATCTTAAGAAATAAAAAAAAATCACCTTGGAAGAATGTTTAATGATTTTTATCTTTTGATTTAAATGGCATATTGCATCACCAGGAAAACGCTAAATTACAATCTACACATGTCCGGGTTTTGAAAAGTACAGAGCTGGATGATTATCTTAAACGGGTACACAGTGATGAATCTGATGGGCACCCAAGAATCACCAAAACGTTTGAACTGGAATCCTTGTTCAGCCGAAACGTGCACTAATTGAGAATAAGATTATTAAAGAATATATCCATTAGCGCTAATTATGACTCATAG
Unaligned ( gi|14 ): CTTTAAGAAAGTAAAACTTTTTTTGGAAAAGAAAAGTATTTCACATCGATTTCTTCCTGAAGGCAGAAAAACGAAAACTTTCTATGATTTTATCTTAATAAATGGCATTTTGCATCACCAGGAAAACGCCATTACAATGTACACAAGTGCAGGTTTTGAAAAAATATAGAGCTGGATGATTATCTTAAACGTGTACA
Unaligned ( gi|15 ): CTTTAAGAAAGTAAAACTTTTTTTGGAAAAGAAAAGTATTTCACATCGATTTCTTCCTGAAGGCAGAAAAACGAAACTTTCTATGATTTTATCTTAATAAATGGCATTTTGCATCACCAGGAAAACGCCATTACAATGTACACAAGTGCAGGTTTTGAAAAATATAGAGCTGGATGATTATCTTAAACGTGTACA
Unaligned ( gi|17 ): ATCAAAGTTGGCTGTATTTTTCAAAATAAAACACCCGTTGTCATTTTTGTCGGCATCGATGTTAAGACTGAATTTTCTCATTGCATTGACATTAGTACAGGGCATCATAGAGACAACATTTAAGTGTCCAACTTTAAGAAAATAATTTTTTTGTTGGGGGGGATCAGAAAAAAAT
Unaligned ( gi|19 ): GCAAAATGCACTAAGTGAAATAAATAAATAAAGAATAAAATACATTATAGCAATTGATTTCTCATGACAACCCCCCTCCGTAGGAAAAAAACCTTAGAAGAACATAATGACACGAATTTCACAAATTCAGTTAGTTAGACACTCTTTTGCAGTACTTGCTTGCATAGTATGT
Unaligned ( gi|23 ): GATTTTATCTTGATTAATGGCATTATGCATAACAAGGCTACTGCAGGTTTTGAATAGTGCAGAGCTGGATGACTATGATCTTAAACGGGTACCAGTACACAGGGATGAATCTGGTGGGCACCTAAGAATCGCAAAAAACGTGTGAATTGTAACCTTTGTT
Unaligned ( gi|26 ): ATAACTCGTGATGAGACAATTATATTAATATCGGCGTAATAAAGAAAAAAAGTCATCTTAATAATTTGTTCACTTGAAATTGATTTTAATAGAAATGATTAAGTTACTTTCGGTTTACTGCAATTAAA
Unaligned ( gi|27 ): AATGCATGTTTTCACTCGTAACATGTAAACCGAGAATACTCGTTGTGATGAGATAACTTTATCGGTTGTTATAAATAAAAAGTGGGGGGAAAATTTTTTTAATCATATTCT
Unaligned ( gi|28 ): AGTCCAGTAGTAGAGAAACAAACATTAAAGATCAATGCATGTTGATTGTATGACTAATAAACAAACTTTTGTTGAATAGAGACTTGTATCTCAAAAAAACGTCAATA
Unaligned ( gi|29 ): ACACCTATTAGTGCCAACTATAACTCATAGACTCTCCCCTTTCCGTAGAAAAAAAAACACCACAAGAACCCCTAACCACAGTGGCAAGAATTTCACAAATA
Unaligned ( gi|30 ): AGTGGTAGAGAAAAAGAATGAAAGATGAAACTAAGTTCATTTTATGACTGATAGACGGAATGGCTTTAAATAGAGGCATGTACATGGAAATA
Unaligned ( gi|33 ): CCCCCTTCCATAGAAAAAACACCATAAGAACCCCTAACACAGTGGCAAGGATTTTACACAAATATA
Unaligned ( gi|35 ): TATCTTTAAAGTATTTTAACTCGTAATGACGAAATAACTCGTTATCAT
Unaligned ( gi|36 ): GTTTTCATTACAAATGCTTTATGTTCATAAAATAGAAGGGAG
Unaligned ( gi|37 ): TGGTAATTTTAATTAAATCACTCATTCGTGATGAGAC
Alignments
lowQualScore : 2222222 11111 111111 66666666666666666666666666666666666666666666666666666666666666 1111111
lowQualScore : 2 6 0 1111111 1 5555555 55555 3 3 3 3 3 3 1 2 5 5 2 2 444444 2 2 2 2 2 66 33 33 2 3 3 2 11111111111111111111111111111111111111111111111111111111111111 0000000 2 2 2 555 2 55 2 44 2 3 3
lowQualScore : . . . ....... . ....... ..... . . . . . . . . . . . . ...... . . . . . .. .. .. . . . . .............................................................. ....... . . . ... . .. . .. . . .
lowQualScore : 0 8 6 2222222 7 3333333 88888 2 3 3 1 1 1 7 7 0 0 5 5 111111 5 5 5 7 7 33 99 66 9 1 1 9 66666666666666666666666666666666666666666666666666666666666666 4444444 9 9 9 000 9 44 9 22 1 1 1
consensus : ATTAAAATGGCAATATTGTACAGTCTACCTTGCG----CGTAACCAGAATAAACACTGAA-C--AATGAAATTTATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-T-T-T-C----TTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CTTTTT-C--TTCAGGCAA--AAGGGT-CA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----G-------TCA---T-TTCT---T--ACGT-A--G--AAAA-A-T-GA---CCC-C-CGGTCAT-TATTCT--ACGGGGGTC-AT-TATTCTTCTTTA
Reference ( family-3151 ) : ATTAAAACGGCAATATTGTACAATTTACCTTGCG----CGTAACCAGAATAAACACTGAA-C--AATGAAATTTATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-T-T-T-C----TTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CTTTTT-C--TTCAGGCAA--AAGGGT-CA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----G-------TCA--AT-TTCT---T--ACGT-A--G--AAAA-A-T-GA---CCC-C-CGGTCAT-TATTCT--ACGGGGGTC-AT-TATTCTTCTTTA
gi|10 : ATTAAAATGGCAATATTGTACAGTCTACCTTGCA----CATAACCAGGATAAACACTGAA-CCCAATGACATTTGTAAG-GG-TGT-CACTATTC-T-ACAGGG-GTCA-T-T-T-T-C----GTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CCTTTT-C--TTCAGGCAA--AAGGGT-CA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------AGG-----G-------TCA--AT-TTCT---T--ACGT-A--G--AAAA-A-T-GA---CCT-T-CGGTCTT-TATTCT--ACGGAGG------TATTCTTCTTTA
gi|11 : TTTACCTTGTGAACACATAACCAGAAC-------GAA-C--AATGGAATTCATAAA-AG-TGT-CAT--------------------T-T-T-T-C----TTTACG-TAGAA-TGTGC
gi|12 : cgcgtatcttgaaatagcttcaatgtgttttcactcataataacgagataactcgttgttatgcaaaacaatatcgtagtaaataaatgaaaaaaaaaatatttgaactttttattcattttaagttgattttaatagaagtaataacgttacATAAAAACTGCAATATTGTCCAGTTTACCTGGCA----TGTAACCAGAATAAATAC----------TGAAATATATAA--GG-GAT-CATTATTC-T-ACAGAG-GCCA-T-T-TAT-C----TTCACG-TAGAA-TGTGCCCATTTTTATGAAAATGACA------------------------------A-TTTTT-T-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----A-------T----AT-TTTTC--T--ACGT-C--G--AAAA-A-T-GACACCCC-C-CAATCAT-TTTTCT--GCTGGGGTC-AT-TGTTCCTCTTT
gi|13 : aAATTCATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-TAT-T-C----TTCACG-TGGAA-TGTGCTTA-TTTTATCAAAATGACA-CTTTTT-C--TTCAGGTAA--AAGGGT-AA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----GGGGGGGATCATTAT-TTTTTTCT--ACGT-A--G--AAAT-A-T-GA---CTC-CACGGTCAT-TATTCT--ACGGGGTTC-AT-TATTCTTCTTTA
gi|16 : AATTTATAAG-GG-G-T-CATTATTC-TAACA-GG-GTCA-T-T-T-TCC----TTCATG-GTGAA--GTGCTCA-TTTTATGAAAAGGACA-C--TTT-C--TTCA-GC-G--AAGGAT-CA-CTTTCTT-G----AGAATAATGAACC--------GG-----------------AGGGGGGCG-------TCA--TT-TTC----T--ACGT-AGTG--AAAA-A-TCGA----CC-C-CGGTCAT---TTCT--ATGGGGGCC-AT-TATTCTTCTc
gi|18 : tCAGAG-GTCA-T-T-T-T-TA---TTCATG-TAGAA-TGTCCTC-------CG-AAATGCCA-CTTTTT-CCTTTTAGGCAA--AAGGGT--A-TTTTTCT-ACGGGAGAATAATT-ACC--------GGT----------------GGGGGT--G-------TCAT-TT-TTCC---TAGACTT-A--G--AACA-A-C-GA---CCT-C-CGACGATCTATTCTTGACGGGCGTC-AT-TATTCTTCGTTAg
gi|2 : ATTAAAATGGCAATACTGTACAATCTACCTTACG----CATAACCAG--------CTGAA-T--A--GAAATTCATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-T-T-A-AA---TTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CTTTTTCC--TTCA-GCAA--AAGGGC-CA-
gi|2 : aatatatctcgaaatatcttcaatatgttctcactcgtaataaagagatataactcgttgtgatgagataacgatatcggtgtaaataaatgaaaagtaaaaaaaaaaaagaaagtttttttagtcattttttgactttttaaaagttgattttaatagaaatgatagttactttctctttagtgtaAATAATG-AC---------AG-----------------GGG-----G-------TCA--TT-TT---------------------AA-A-T-GA---CCTTC-CGGTCAT-TATTCT--ACATGGGTC-AT-TATTCTTCTTTAataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataatgacagggggtcattttaaatgaccttccggtcattattctacatgggtcattattcttctttaca
gi|20 : aatatatctcgaaatatcttcaatatgttctcactcgtaataaagagatataactcgttgtgatgagataacgatatcggtgtaaataaatgaaaagtaaaaaaaaaaaagaaagtttttttagtcattttttgactttttaaaagttgattttaatagaaatgatagttactttctctttagtgtaattaaaatggcaatactgtacaatctaccttacgcataaccagctgaatagaaattcataagggggtcattattctacaggggtcatttaaattcacgtagaatgtgctcatttttatgaaaatgacactttttccttcagcaaaagggccaataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaAATTTATAAG-GG-GG--CATTATTC-T-ACAGCG-GTCA-TAT-T-T-C----TTCACG-TGGAA-TGTGCTCATTTTCATGGAAATGGCA-CTTTTT-G--TTCAGGTAA--AATGGA-CA-TTTTTCT-AC-GTAGAA-------------------------------------------------------------------T--ACGT-A--G--AGAA-A-T-GA---CCC-C-CGGTCAT-TATTCT--ACCGGGGTC-AT-TATTCTTCTTTca
gi|21 : ATTTATAAG-GG-GG--CATTATTC-T-ACA-CG-GTCA-TAT-T-T-C----TTCACG-TGGAA-TGTGCTCATTTTCATGGAAATGGCA-CTTTTT-TG-TTCAGGTAA--AATGGA-CA-TTTTTCT-AC-GTAGAA-------------------------------------------------------------------T--ACGT-------AAGA-A-T-GA---CCC-C---GTCAT-TATTCT--ACCGGGGTC-AT-TATTCTTCTTTA
gi|22 : CAGAGTGTCA-T-T-T-T-------TCATGATAGAAATGT-CCCATC-------AAAT-ACAACTTTTG-C--TTTAG-CAACAAAGGGT-CA-TTTTCTT-AC-GGAGA-TAATT-ACG--------GG-----------------GGG-----G-------TCA---T-TTCT------ACTTGA--G--AAAA-A-C-GA---CCT-C-CGACCAT-CATTCT--AC--GGCTCTATATATTCTTCGTTA
gi|24 : tAATTTATAAG-GT-GAT-CATTATTC-T-ACAGGG-GTCATT-T-T-T-C----TTCACG-TAGAA-TGTGCTCATTTTT-TCAA--------------------TAGTCAA--AAGGGC-CA-TTTTTTTAAC-GTAGAATAATG-ACC---------------------------GGA-----A-------T----AT-TTTT---T--CCAT----GCCCAAA-A-T-TA---CCC-C-AGGTCAT-TATTCc
gi|25 : TCA-T-T-T-TTC----TTCACG-TAGAA-TGTGC--------ATGAAAATGACA-CTTTAT-C--TTCAGGCAA--AATGGT-CA-TTTTTCC-AT-GCAGAATAATG-ATCGGGGGAGGGG-----------------GGG-----G-------TCA--------T---T--G----A--G--ATCA-T-T------TTC-C-CGGTCAT-TATTCT--ACGGGGGTC-AT-TATTCTT
gi|3 : -CATTACTGGT-ACAGGG-ATCA-T-A-G-A-G----ACAACG-TGGAA--GTGTCCAAGTTTAAGAAAATCAAG-CTTTTT-C--TTt
gi|31 : atcaagaaggctgtatgtttttcatagaagaaacaccggttgtcatttttgtcggcatcgatggtaagactgaagttcgcgcgcgagatcccttcattttctcattccattgaG-----------------GGG-----G-------TCA---T-TTTT---TCGACAC-A--T--ATAATA-T-AC---TCC-C-CGGTCAT-TATTCT--ACAGAGGTC-AT-TATTCTTCTTTAttttctgtttattagaagtaatacttcatttcgatttcttcctgtagggcaaaaaacgaaactttcgacgaaaatgtcgagattttatcttgataaatggcatgatattgcatcaccaggaaaacgctattatacaatgtacacaagagcaggttttggaaaaagcagaactggatgattggtacacggtgatgaatctggtggacacctaataatcaccagaacgtttgaattagaaccctgaaacatgcactaattgggaataagattaccaaaaggacaatgtataaattatgactcgtac
gi|32 : ATTTATAAG-GG-GGT-CATTATTC-T-ACCGGG-GTAAAT-T-T-T-C----TTCACG-TGGAA-TGTGCTCATTTTCATGAA
gi|34 : GAAAATGACA-CTTTTT-C--TACAGACAA--AAGGTT-AA-TTTTTCT-AC-GTAGAATAATG-ACT--------G
gi|8 : GAATAAATAATGAAAC--AATGAAATTTATAAG-GG-GGT-CATTATTC-C-ACA-----------------------------------CGTGCTCATTTTTATGAAAATGAAA-TTTTTT-C--TTCAGGCAA--AAAGGC-AA-CCTTTCT-AC-GTAGAAAAATT-ACC---------------------------CTG-----G-------TCA--TTATTCT---T--
gi|8 : ttcaatgtgttttcacagaaaataactcgggttgagagaactatatcagtgtaaagaaataaaaagtaaaaaaaaaaaaaagcccatcttcttaatcatttttttttttactataagttgatttcaatagaaatgatcaagtaactttctgtttactgtaattaaaatgacaatT-TTCT------ACGT-A--G--AAAA-A-T-TA---CCC-T--GGTCAT-TATTCT--TCGGGGGCC-AT-cgggggccatt
gi|9 : ttcaatgtgttttcacagaaaataactcgggttgagagaactatatcagtgtaaagaaataaaaagtaaaaaaaaaaaaaagcccatcttcttaatcatttttttttttactataagttgatttcaatagaaatgatcaagtaactttctgtttactgtaattaaaatgacaatgaataaataatgaaacaatgaaatttataagggggtcattattccacacgtgctcatttttatgaaaatgaaattttttcttcaggcaaaaaggcaaccTTAAAATGGCAATATTGTACAAT------------------ACCAGAATAAACACTGA--C--AATGGAATTTAAAAGTGGCGGTTCATTATTC-T-ACAGGG--TCT-T-T-T-T-CTTTCTTCACG-TAGAA-TGGGCTCATTTTTATGAAAATGACA-CTTTTT-C--TTCAGGCAC--AAAGGTACATTTTTTCT----GTAAGAT--TG-AGC--------GGGGGGGGGGGGGGGGGGGGGG-----G-------GCA--TT-TTTC---T--GTGT-A--GC-AAAA-ACT-GA---CCC-C---GTCAT-TATTCT---CGGGGGTC-AT-TGTTCTTCTTT
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GGTACAGGGCATCATAGAGACAACGTGGACGTGTCCAAATTAAGAAAATCAAGCTTTTTTTTATAAGAGGAAATATTTTATTTCGATTTCTTCCTGTAGGGCAAAAAACGAAACTTTCGACGAAAATGTCGAGATTTTATCTTGATAAATGACATGATATTACATCATCAGGAAAACGCTATTATACAAGGTACACAAGAGCAGGTTTTGGAAAAAGCAGAACTGGGTGATTGGTACACGGTGATGAATCTGGTGGACACCTAATAATAACCAAAAACCCTGAAAAATGCACTAATTGAGAATAAGATTATTCAAAAATGATATATAATCCATTACTATCATGTATGACTCGTATAGACACCAGTACAGCTGTAGTAGAGAAAAAAAAATTAAAGATCGATGTAAGTTCATTTTATGACCAATAGACAGAATTTTCTTAAATAGACGAAATAACTTAATGTGTTTTAATGAGATACATGTAATTCGTTGTGATGAGATAATTATATAT
Unaligned ( gi|4 ): AGAGCTGGATGGTTATCTGAATCTGGGCCGCACCTAACAATCGCCAAAACGTATGAATTGGATCACCTGTTCAGCCGAGACATGTACTAATTGAAAATAAGATTATCAAAGAATAATACATCCATTACAGCTAATTATAACTCATAGACACCCCCTTCCGTAGAAAAAAAAAACACACCACAAGATCCCCAGTGGCAAGAATTTCTCAAATATAGTTTAGTTATGAACATTGTGGGATGTACTTGCCTGCCCAGTAGTAGAGAAAAAAATCAAAGATAAATGCAAGTTCATTTTAGGACTAATAAACAGAATCAAATAGAGGCTTGCATCTCGAGATAACTTCAATGCGTTTTCACTAGTAATAACGAGATCACTCGTTGTGATGAGATAGCTAGCTATATCGGTGTAAATAAATGAAAAGT
Unaligned ( gi|5 ): CATTGAAACTATAGGCACAGGACATCATTAGACAACATGGACGTGTCCGAGTTTAAAAAAAATAATACTTTTTATTAATAAGAAAAAAATTCTTCATGTAAGTAGAAGAAAGGAAACTTTTGACAAAAATGTAAAGACTTTATCTTGTTAAATTGCATATTACAGCCACAGAAAAACACTCAAACACCACTGCAGGTTTTGAAAAGTACATATCTGGATGATTGTCTTAAACGGGTACACAGTGGGCACCTAGGAATCACCAAACGTTTGAATTAAAACCCTGGTTCAGTTGAAACATACACGTACTATGTCTGCTAAATTTCCAGTAACTGAGAATGAAATTATTACAGAATAATATGTTCATTTGTGCTTTATGATTCATAGATCCGCCACCGTAGAGAAAAACCAAAA
Unaligned ( gi|6 ): GCAGAACTGGATGATTGGTACACGGTGATGAATCTGGTGGACACCTAATAATCACCAGAACGTTTGAATTAGAACCCTGAAACATGCACTAATTGGGAATAAGATTACCAAAAGGACAATGTATAAATTATGACTCGTACAGCCCCCCCCCCCTCCCCATTTCTGTAGAAAAAAAAAACACCACACCACACAGTGACAAGAATTTCACAAATATAGTTTAGTTATGAAATCTTTCAGTATAGCTGTAGTAGAGAAAAAAAAACATTTAAAGATCAACACTTCAATGTGTTTTCACAGAAAATAACTCGGGTTGAGAGAACTATATCAGTGTAAAGAAATAAAAAGTA
Unaligned ( gi|7 ): TTTCTTCTGTCCATTCGTTACTCAAAATTAAAAGTTCTTTTTTGCTCATCTTAAGAAATAAAAAAAAATCACCTTGGAAGAATGTTTAATGATTTTTATCTTTTGATTTAAATGGCATATTGCATCACCAGGAAAACGCTAAATTACAATCTACACATGTCCGGGTTTTGAAAAGTACAGAGCTGGATGATTATCTTAAACGGGTACACAGTGATGAATCTGATGGGCACCCAAGAATCACCAAAACGTTTGAACTGGAATCCTTGTTCAGCCGAAACGTGCACTAATTGAGAATAAGATTATTAAAGAATATATCCATTAGCGCTAATTATGACTCATAG
Unaligned ( gi|14 ): CTTTAAGAAAGTAAAACTTTTTTTGGAAAAGAAAAGTATTTCACATCGATTTCTTCCTGAAGGCAGAAAAACGAAAACTTTCTATGATTTTATCTTAATAAATGGCATTTTGCATCACCAGGAAAACGCCATTACAATGTACACAAGTGCAGGTTTTGAAAAAATATAGAGCTGGATGATTATCTTAAACGTGTACA
Unaligned ( gi|15 ): CTTTAAGAAAGTAAAACTTTTTTTGGAAAAGAAAAGTATTTCACATCGATTTCTTCCTGAAGGCAGAAAAACGAAACTTTCTATGATTTTATCTTAATAAATGGCATTTTGCATCACCAGGAAAACGCCATTACAATGTACACAAGTGCAGGTTTTGAAAAATATAGAGCTGGATGATTATCTTAAACGTGTACA
Unaligned ( gi|17 ): ATCAAAGTTGGCTGTATTTTTCAAAATAAAACACCCGTTGTCATTTTTGTCGGCATCGATGTTAAGACTGAATTTTCTCATTGCATTGACATTAGTACAGGGCATCATAGAGACAACATTTAAGTGTCCAACTTTAAGAAAATAATTTTTTTGTTGGGGGGGATCAGAAAAAAAT
Unaligned ( gi|19 ): GCAAAATGCACTAAGTGAAATAAATAAATAAAGAATAAAATACATTATAGCAATTGATTTCTCATGACAACCCCCCTCCGTAGGAAAAAAACCTTAGAAGAACATAATGACACGAATTTCACAAATTCAGTTAGTTAGACACTCTTTTGCAGTACTTGCTTGCATAGTATGT
Unaligned ( gi|23 ): GATTTTATCTTGATTAATGGCATTATGCATAACAAGGCTACTGCAGGTTTTGAATAGTGCAGAGCTGGATGACTATGATCTTAAACGGGTACCAGTACACAGGGATGAATCTGGTGGGCACCTAAGAATCGCAAAAAACGTGTGAATTGTAACCTTTGTT
Unaligned ( gi|26 ): ATAACTCGTGATGAGACAATTATATTAATATCGGCGTAATAAAGAAAAAAAGTCATCTTAATAATTTGTTCACTTGAAATTGATTTTAATAGAAATGATTAAGTTACTTTCGGTTTACTGCAATTAAA
Unaligned ( gi|27 ): AATGCATGTTTTCACTCGTAACATGTAAACCGAGAATACTCGTTGTGATGAGATAACTTTATCGGTTGTTATAAATAAAAAGTGGGGGGAAAATTTTTTTAATCATATTCT
Unaligned ( gi|28 ): AGTCCAGTAGTAGAGAAACAAACATTAAAGATCAATGCATGTTGATTGTATGACTAATAAACAAACTTTTGTTGAATAGAGACTTGTATCTCAAAAAAACGTCAATA
Unaligned ( gi|29 ): ACACCTATTAGTGCCAACTATAACTCATAGACTCTCCCCTTTCCGTAGAAAAAAAAACACCACAAGAACCCCTAACCACAGTGGCAAGAATTTCACAAATA
Unaligned ( gi|30 ): AGTGGTAGAGAAAAAGAATGAAAGATGAAACTAAGTTCATTTTATGACTGATAGACGGAATGGCTTTAAATAGAGGCATGTACATGGAAATA
Unaligned ( gi|33 ): CCCCCTTCCATAGAAAAAACACCATAAGAACCCCTAACACAGTGGCAAGGATTTTACACAAATATA
Unaligned ( gi|35 ): TATCTTTAAAGTATTTTAACTCGTAATGACGAAATAACTCGTTATCAT
Unaligned ( gi|36 ): GTTTTCATTACAAATGCTTTATGTTCATAAAATAGAAGGGAG
Unaligned ( gi|37 ): TGGTAATTTTAATTAAATCACTCATTCGTGATGAGAC
Alignments
lowQualScore : 2222222 11111 111111 444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 6 0 1111111 1 5555555 55555 3 3 3 3 3 3 1 2 5 5 2 2 444444 2 2 2 2 2 66 33 33 2 3 3 2 999999999999999999999999999999999999999999999999999999999999999999999999999999 2 2 2 888 2 55 2 44 2 3 3
lowQualScore : . . ....... . ....... ..... . . . . . . . . . . . . ...... . . . . . .. .. .. . . . . .............................................................................. . . . ... . .. . .. . . .
lowQualScore : 4 6 2222222 7 3333333 88888 2 3 3 1 1 1 7 7 0 0 5 5 111111 5 5 5 7 7 33 99 66 9 1 1 9 666666666666666666666666666666666666666666666666666666666666666666666666666666 9 9 9 999 9 44 9 22 1 1 1
consensus : ATTAAAATGGCAATATTGTACAGTCTACCTTGCG----CGTAACCAGAATAAACACTGAA-C--AATGAAATTTATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-T-T-T-C----TTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CTTTTT-C--TTCAGGCAA--AAGGGT-CA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----G-------TC-A------T--TTTT-T----ACGT-A--G--AAAA-A-T-GA---CCC-C-CGGTCAT-TATTCT--ACGGGGGTC-AT-TATTCTTCTTTA
Reference ( family-3151 ) : ATTAAAATGGCAATATTGTACAGTCTACCTTGCG----CGTAACCAGAATAAACACTGAA-C--AATGAAATTTATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-T-T-T-C----TTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CTTTTT-C--TTCAGGCAA--AAGGGT-CA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----G-------TC-A------T--TTCT-T----ACGT-A--G--AAAA-A-T-GA---CCC-C-CGGTCAT-TATTCT--ACGGGGGTC-AT-TATTCTTCTTTA
gi|10 : ATTAAAATGGCAATATTGTACAGTCTACCTTGCA----CATAACCAGGATAAACACTGAA-CCCAATGACATTTGTAAG-GG-TGT-CACTATTC-T-ACAGGG-GTCA-T-T-T-T-C----GTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CCTTTT-C--TTCAGGCAA--AAGGGT-CA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------AGG-----G-------TCAA------T--TTCT-T----ACGT-A--G--AAAA-A-T-GA---CCT-T-CGGTCTT-TATTCT--ACGGAGG------TATTCTTCTTTA
gi|11 : TTTACCTTGTGAACACATAACCAGAAC-------GAA-C--AATGGAATTCATAAA-AG-TGT-CAT--------------------T-T-T-T-C----TTTACG-TAGAA-TGTGC
gi|12 : cgcgtatcttgaaatagcttcaatgtgttttcactcataataacgagataactcgttgttatgcaaaacaatatcgtagtaaataaatgaaaaaaaaaatatttgaactttttattcattttaagttgattttaatagaagtaataacgttacATAAAAACTGCAATATTGTCCAGTTTACCTGGCA----TGTAACCAGAATAAATAC----------TGAAATATATAA--GG-GAT-CATTATTC-T-ACAGAG-GCCA-T-T-TAT-C----TTCACG-TAGAA-TGTGCCCATTTTTATGAAAATGACA------------------------------A-TTTTT-T-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----A-------T--A------T--TTTTCT----ACGT-C--G--AAAA-A-T-GACACCCC-C-CAATCAT-TTTTCT--GCTGGGGTC-AT-TGTTCCTCTTT
gi|13 : aAATTCATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-TAT-T-C----TTCACG-TGGAA-TGTGCTTA-TTTTATCAAAATGACA-CTTTTT-C--TTCAGGTAA--AAGGGT-AA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----GGGGGGGATC-ATTATTTT--TTTC-T----ACGT-A--G--AAAT-A-T-GA---CTC-CACGGTCAT-TATTCT--ACGGGGTTC-AT-TATTCTTCTTTA
gi|16 : AATTTATAAG-GG-G-T-CATTATTC-TAACA-GG-GTCA-T-T-T-TCC----TTCATG-GTGAA--GTGCTCA-TTTTATGAAAAGGACA-C--TTT-C--TTCA-GC-G--AAGGAT-CA-CTTTCTT-G----AGAATAATGAACC--------GG-----------------AGGGGGGCG-------TC-A------T--TTTC-T----ACGT-AGTG--AAAA-A-TCGA----CC-C-CGGTCAT---TTCT--ATGGGGGCC-AT-TATTCTTCTc
gi|18 : tCAGAG-GTCA-T-T-T-T-TA---TTCATG-TAGAA-TGTCCTC-------CG-AAATGCCA-CTTTTT-CCTTTTAGGCAA--AAGGGT--A-TTTTTCT-ACGGGAGAATAATT-ACC--------GGT----------------GGGGGT--G-------TC-A------T--TTTT-CCTAGACTT-A--G--AACA-A-C-GA---CCT-C-CGACGATCTATTCTTGACGGGCGTC-AT-TATTCTTCGTTAg
gi|2 : ATTAAAATGGCAATACTGTACAATCTACCTTACG----CATAACCAG--------CTGAA-T--A--GAAATTCATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-T-T-A-AA---TTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CTTTTTCC--TTCA-GCAA--AAGGGC-CA-
gi|2 : aatatatctcgaaatatcttcaatatgttctcactcgtaataaagagatataactcgttgtgatgagataacgatatcggtgtaaataaatgaaaagtaaaaaaaaaaaagaaagtttttttagtcattttttgactttttaaaagttgattttaatagaaatgatagttactttctctttagtgtaAATAATG-AC---------AG-----------------GGG-----G-------TC-A------T--TTT--------------------AA-A-T-GA---CCTTC-CGGTCAT-TATTCT--ACATGGGTC-AT-TATTCTTCTTTAataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataatgacagggggtcattttaaatgaccttccggtcattattctacatgggtcattattcttctttaca
gi|20 : aatatatctcgaaatatcttcaatatgttctcactcgtaataaagagatataactcgttgtgatgagataacgatatcggtgtaaataaatgaaaagtaaaaaaaaaaaagaaagtttttttagtcattttttgactttttaaaagttgattttaatagaaatgatagttactttctctttagtgtaattaaaatggcaatactgtacaatctaccttacgcataaccagctgaatagaaattcataagggggtcattattctacaggggtcatttaaattcacgtagaatgtgctcatttttatgaaaatgacactttttccttcagcaaaagggccaataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaAATTTATAAG-GG-GG--CATTATTC-T-ACAGCG-GTCA-TAT-T-T-C----TTCACG-TGGAA-TGTGCTCATTTTCATGGAAATGGCA-CTTTTT-G--TTCAGGTAA--AATGGA-CA-TTTTTCT-AC-GTAGAA----------------------------------------------------------------------T----ACGT-A--G--AGAA-A-T-GA---CCC-C-CGGTCAT-TATTCT--ACCGGGGTC-AT-TATTCTTCTTTca
gi|21 : ATTTATAAG-GG-GG--CATTATTC-T-ACA-CG-GTCA-TAT-T-T-C----TTCACG-TGGAA-TGTGCTCATTTTCATGGAAATGGCA-CTTTTT-TG-TTCAGGTAA--AATGGA-CA-TTTTTCT-AC-GTAGAA----------------------------------------------------------------------T----ACGT-------AAGA-A-T-GA---CCC-C---GTCAT-TATTCT--ACCGGGGTC-AT-TATTCTTCTTTA
gi|22 : CAGAGTGTCA-T-T-T-T-------TCATGATAGAAATGT-CCCATC-------AAAT-ACAACTTTTG-C--TTTAG-CAACAAAGGGT-CA-TTTTCTT-AC-GGAGA-TAATT-ACG--------GG-----------------GGG-----G-------TC-A------T--TTC--T----ACTTGA--G--AAAA-A-C-GA---CCT-C-CGACCAT-CATTCT--AC--GGCTCTATATATTCTTCGTTA
gi|24 : tAATTTATAAG-GT-GAT-CATTATTC-T-ACAGGG-GTCATT-T-T-T-C----TTCACG-TAGAA-TGTGCTCATTTTT-TCAA--------------------TAGTCAA--AAGGGC-CA-TTTTTTTAAC-GTAGAATAATG-ACC--------GG-----------------AA---------------T-A------T--TTTT-T----CCAT----GCCCAAA-A-T-TA---CCC-C-AGGTCAT-TATTCc
gi|25 : TCA-T-T-T-TTC----TTCACG-TAGAA-TGTGC--------ATGAAAATGACA-CTTTAT-C--TTCAGGCAA--AATGGT-CA-TTTTTCC-AT-GCAGAATAATG-ATCGGGGGAGGGG-----------------GGG-----G-------TC-A------T--T---------------------GAG-A-T-CATT-TTC-C-CGGTCAT-TATTCT--ACGGGGGTC-AT-TATTCTT
gi|3 : -CATTACTGGT-ACAGGG-ATCA-T-A-G-A-G----ACAACG-TGGAA--GTGTCCAAGTTTAAGAAAATCAAG-CTTTTT-C--TTt
gi|31 : atcaagaaggctgtatgtttttcatagaagaaacaccggttgtcatttttgtcggcatcgatggtaagactgaagttcgcgcgcgagatcccttcattttctcattccattgaG-----------------GGG-----G-------TC-A------T--TTTT-TCG--ACAC-A--T--ATAATA-T-AC---TCC-C-CGGTCAT-TATTCT--ACAGAGGTC-AT-TATTCTTCTTTAttttctgtttattagaagtaatacttcatttcgatttcttcctgtagggcaaaaaacgaaactttcgacgaaaatgtcgagattttatcttgataaatggcatgatattgcatcaccaggaaaacgctattatacaatgtacacaagagcaggttttggaaaaagcagaactggatgattggtacacggtgatgaatctggtggacacctaataatcaccagaacgtttgaattagaaccctgaaacatgcactaattgggaataagattaccaaaaggacaatgtataaattatgactcgtac
gi|32 : ATTTATAAG-GG-GGT-CATTATTC-T-ACCGGG-GTAAAT-T-T-T-C----TTCACG-TGGAA-TGTGCTCATTTTCATGAA
gi|34 : GAAAATGACA-CTTTTT-C--TACAGACAA--AAGGTT-AA-TTTTTCT-AC-GTAGAATAATG-ACT--------G
gi|8 : GAATAAATAATGAAAC--AATGAAATTTATAAG-GG-GGT-CATTATTC-C-ACA-----------------------------------CGTGCTCATTTTTATGAAAATGAAA-TTTTTT-C--TTCAGGCAA--AAAGGC-AA-CCTTTCT-AC-GTAGAAAAATT-ACC---------------------------CTG-----G-------TC-A------TTATTCT-T----
gi|8 : ttcaatgtgttttcacagaaaataactcgggttgagagaactatatcagtgtaaagaaataaaaagtaaaaaaaaaaaaaagcccatcttcttaatcatttttttttttactataagttgatttcaatagaaatgatcaagtaactttctgtttactgtaattaaaatgacaat------T--TTCT------ACGT-A--G--AAAA-A-T-TA---CCC-T--GGTCAT-TATTCT--TCGGGGGCC-AT-cgggggccatt
gi|9 : ttcaatgtgttttcacagaaaataactcgggttgagagaactatatcagtgtaaagaaataaaaagtaaaaaaaaaaaaaagcccatcttcttaatcatttttttttttactataagttgatttcaatagaaatgatcaagtaactttctgtttactgtaattaaaatgacaatgaataaataatgaaacaatgaaatttataagggggtcattattccacacgtgctcatttttatgaaaatgaaattttttcttcaggcaaaaaggcaaccTTAAAATGGCAATATTGTACAAT------------------ACCAGAATAAACACTGA--C--AATGGAATTTAAAAGTGGCGGTTCATTATTC-T-ACAGGG--TCT-T-T-T-T-CTTTCTTCACG-TAGAA-TGGGCTCATTTTTATGAAAATGACA-CTTTTT-C--TTCAGGCAC--AAAGGTACATTTTTTCT----GTAAGAT--TG-AGC--------GGGGGGGGGGGGGGGGGGGGGG-----G-------GC-A------T--TTTTCT----GTGT-A--GC-AAAA-ACT-GA---CCC-C---GTCAT-TATTCT---CGGGGGTC-AT-TGTTCTTCTTT
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GGTACAGGGCATCATAGAGACAACGTGGACGTGTCCAAATTAAGAAAATCAAGCTTTTTTTTATAAGAGGAAATATTTTATTTCGATTTCTTCCTGTAGGGCAAAAAACGAAACTTTCGACGAAAATGTCGAGATTTTATCTTGATAAATGACATGATATTACATCATCAGGAAAACGCTATTATACAAGGTACACAAGAGCAGGTTTTGGAAAAAGCAGAACTGGGTGATTGGTACACGGTGATGAATCTGGTGGACACCTAATAATAACCAAAAACCCTGAAAAATGCACTAATTGAGAATAAGATTATTCAAAAATGATATATAATCCATTACTATCATGTATGACTCGTATAGACACCAGTACAGCTGTAGTAGAGAAAAAAAAATTAAAGATCGATGTAAGTTCATTTTATGACCAATAGACAGAATTTTCTTAAATAGACGAAATAACTTAATGTGTTTTAATGAGATACATGTAATTCGTTGTGATGAGATAATTATATAT
Unaligned ( gi|4 ): AGAGCTGGATGGTTATCTGAATCTGGGCCGCACCTAACAATCGCCAAAACGTATGAATTGGATCACCTGTTCAGCCGAGACATGTACTAATTGAAAATAAGATTATCAAAGAATAATACATCCATTACAGCTAATTATAACTCATAGACACCCCCTTCCGTAGAAAAAAAAAACACACCACAAGATCCCCAGTGGCAAGAATTTCTCAAATATAGTTTAGTTATGAACATTGTGGGATGTACTTGCCTGCCCAGTAGTAGAGAAAAAAATCAAAGATAAATGCAAGTTCATTTTAGGACTAATAAACAGAATCAAATAGAGGCTTGCATCTCGAGATAACTTCAATGCGTTTTCACTAGTAATAACGAGATCACTCGTTGTGATGAGATAGCTAGCTATATCGGTGTAAATAAATGAAAAGT
Unaligned ( gi|5 ): CATTGAAACTATAGGCACAGGACATCATTAGACAACATGGACGTGTCCGAGTTTAAAAAAAATAATACTTTTTATTAATAAGAAAAAAATTCTTCATGTAAGTAGAAGAAAGGAAACTTTTGACAAAAATGTAAAGACTTTATCTTGTTAAATTGCATATTACAGCCACAGAAAAACACTCAAACACCACTGCAGGTTTTGAAAAGTACATATCTGGATGATTGTCTTAAACGGGTACACAGTGGGCACCTAGGAATCACCAAACGTTTGAATTAAAACCCTGGTTCAGTTGAAACATACACGTACTATGTCTGCTAAATTTCCAGTAACTGAGAATGAAATTATTACAGAATAATATGTTCATTTGTGCTTTATGATTCATAGATCCGCCACCGTAGAGAAAAACCAAAA
Unaligned ( gi|6 ): GCAGAACTGGATGATTGGTACACGGTGATGAATCTGGTGGACACCTAATAATCACCAGAACGTTTGAATTAGAACCCTGAAACATGCACTAATTGGGAATAAGATTACCAAAAGGACAATGTATAAATTATGACTCGTACAGCCCCCCCCCCCTCCCCATTTCTGTAGAAAAAAAAAACACCACACCACACAGTGACAAGAATTTCACAAATATAGTTTAGTTATGAAATCTTTCAGTATAGCTGTAGTAGAGAAAAAAAAACATTTAAAGATCAACACTTCAATGTGTTTTCACAGAAAATAACTCGGGTTGAGAGAACTATATCAGTGTAAAGAAATAAAAAGTA
Unaligned ( gi|7 ): TTTCTTCTGTCCATTCGTTACTCAAAATTAAAAGTTCTTTTTTGCTCATCTTAAGAAATAAAAAAAAATCACCTTGGAAGAATGTTTAATGATTTTTATCTTTTGATTTAAATGGCATATTGCATCACCAGGAAAACGCTAAATTACAATCTACACATGTCCGGGTTTTGAAAAGTACAGAGCTGGATGATTATCTTAAACGGGTACACAGTGATGAATCTGATGGGCACCCAAGAATCACCAAAACGTTTGAACTGGAATCCTTGTTCAGCCGAAACGTGCACTAATTGAGAATAAGATTATTAAAGAATATATCCATTAGCGCTAATTATGACTCATAG
Unaligned ( gi|14 ): CTTTAAGAAAGTAAAACTTTTTTTGGAAAAGAAAAGTATTTCACATCGATTTCTTCCTGAAGGCAGAAAAACGAAAACTTTCTATGATTTTATCTTAATAAATGGCATTTTGCATCACCAGGAAAACGCCATTACAATGTACACAAGTGCAGGTTTTGAAAAAATATAGAGCTGGATGATTATCTTAAACGTGTACA
Unaligned ( gi|15 ): CTTTAAGAAAGTAAAACTTTTTTTGGAAAAGAAAAGTATTTCACATCGATTTCTTCCTGAAGGCAGAAAAACGAAACTTTCTATGATTTTATCTTAATAAATGGCATTTTGCATCACCAGGAAAACGCCATTACAATGTACACAAGTGCAGGTTTTGAAAAATATAGAGCTGGATGATTATCTTAAACGTGTACA
Unaligned ( gi|17 ): ATCAAAGTTGGCTGTATTTTTCAAAATAAAACACCCGTTGTCATTTTTGTCGGCATCGATGTTAAGACTGAATTTTCTCATTGCATTGACATTAGTACAGGGCATCATAGAGACAACATTTAAGTGTCCAACTTTAAGAAAATAATTTTTTTGTTGGGGGGGATCAGAAAAAAAT
Unaligned ( gi|19 ): GCAAAATGCACTAAGTGAAATAAATAAATAAAGAATAAAATACATTATAGCAATTGATTTCTCATGACAACCCCCCTCCGTAGGAAAAAAACCTTAGAAGAACATAATGACACGAATTTCACAAATTCAGTTAGTTAGACACTCTTTTGCAGTACTTGCTTGCATAGTATGT
Unaligned ( gi|23 ): GATTTTATCTTGATTAATGGCATTATGCATAACAAGGCTACTGCAGGTTTTGAATAGTGCAGAGCTGGATGACTATGATCTTAAACGGGTACCAGTACACAGGGATGAATCTGGTGGGCACCTAAGAATCGCAAAAAACGTGTGAATTGTAACCTTTGTT
Unaligned ( gi|26 ): ATAACTCGTGATGAGACAATTATATTAATATCGGCGTAATAAAGAAAAAAAGTCATCTTAATAATTTGTTCACTTGAAATTGATTTTAATAGAAATGATTAAGTTACTTTCGGTTTACTGCAATTAAA
Unaligned ( gi|27 ): AATGCATGTTTTCACTCGTAACATGTAAACCGAGAATACTCGTTGTGATGAGATAACTTTATCGGTTGTTATAAATAAAAAGTGGGGGGAAAATTTTTTTAATCATATTCT
Unaligned ( gi|28 ): AGTCCAGTAGTAGAGAAACAAACATTAAAGATCAATGCATGTTGATTGTATGACTAATAAACAAACTTTTGTTGAATAGAGACTTGTATCTCAAAAAAACGTCAATA
Unaligned ( gi|29 ): ACACCTATTAGTGCCAACTATAACTCATAGACTCTCCCCTTTCCGTAGAAAAAAAAACACCACAAGAACCCCTAACCACAGTGGCAAGAATTTCACAAATA
Unaligned ( gi|30 ): AGTGGTAGAGAAAAAGAATGAAAGATGAAACTAAGTTCATTTTATGACTGATAGACGGAATGGCTTTAAATAGAGGCATGTACATGGAAATA
Unaligned ( gi|33 ): CCCCCTTCCATAGAAAAAACACCATAAGAACCCCTAACACAGTGGCAAGGATTTTACACAAATATA
Unaligned ( gi|35 ): TATCTTTAAAGTATTTTAACTCGTAATGACGAAATAACTCGTTATCAT
Unaligned ( gi|36 ): GTTTTCATTACAAATGCTTTATGTTCATAAAATAGAAGGGAG
Unaligned ( gi|37 ): TGGTAATTTTAATTAAATCACTCATTCGTGATGAGAC
Alignments
lowQualScore : 2222222 11111 111111 4444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 6 0 1111111 1 5555555 55555 3 3 3 3 3 3 1 2 5 5 2 2 444444 2 2 2 2 2 66 33 33 2 3 3 2 1111111111111111111111111111111111111111111111111111111111111111111111111111 2 2 2 888 2 55 2 44 2 3 3
lowQualScore : . . ....... . ....... ..... . . . . . . . . . . . . ...... . . . . . .. .. .. . . . . ............................................................................ . . . ... . .. . .. . . .
lowQualScore : 4 6 2222222 7 3333333 88888 2 3 3 1 1 1 7 7 0 0 5 5 111111 5 5 5 7 7 33 99 66 9 1 1 9 7777777777777777777777777777777777777777777777777777777777777777777777777777 9 9 9 999 9 44 9 22 1 1 1
consensus : ATTAAAATGGCAATATTGTACAGTCTACCTTGCG----CGTAACCAGAATAAACACTGAA-C--AATGAAATTTATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-T-T-T-C----TTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CTTTTT-C--TTCAGGCAA--AAGGGT-CA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----G-------TC-A------TTTTT-T----ACGT-A--G--AAAA-A-T-GA---CCC-C-CGGTCAT-TATTCT--ACGGGGGTC-AT-TATTCTTCTTTA
Reference ( family-3151 ) : ATTAAAATGGCAATATTGTACAGTCTACCTTGCG----CGTAACCAGAATAAACACTGAA-C--AATGAAATTTATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-T-T-T-C----TTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CTTTTT-C--TTCAGGCAA--AAGGGT-CA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----G-------TC-A------TTTTT-T----ACGT-A--G--AAAA-A-T-GA---CCC-C-CGGTCAT-TATTCT--ACGGGGGTC-AT-TATTCTTCTTTA
gi|10 : ATTAAAATGGCAATATTGTACAGTCTACCTTGCA----CATAACCAGGATAAACACTGAA-CCCAATGACATTTGTAAG-GG-TGT-CACTATTC-T-ACAGGG-GTCA-T-T-T-T-C----GTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CCTTTT-C--TTCAGGCAA--AAGGGT-CA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------AGG-----G-------TCAA------TTTCT-T----ACGT-A--G--AAAA-A-T-GA---CCT-T-CGGTCTT-TATTCT--ACGGAGG------TATTCTTCTTTA
gi|11 : TTTACCTTGTGAACACATAACCAGAAC-------GAA-C--AATGGAATTCATAAA-AG-TGT-CAT--------------------T-T-T-T-C----TTTACG-TAGAA-TGTGC
gi|12 : cgcgtatcttgaaatagcttcaatgtgttttcactcataataacgagataactcgttgttatgcaaaacaatatcgtagtaaataaatgaaaaaaaaaatatttgaactttttattcattttaagttgattttaatagaagtaataacgttacATAAAAACTGCAATATTGTCCAGTTTACCTGGCA----TGTAACCAGAATAAATAC----------TGAAATATATAA--GG-GAT-CATTATTC-T-ACAGAG-GCCA-T-T-TAT-C----TTCACG-TAGAA-TGTGCCCATTTTTATGAAAATGACA------------------------------A-TTTTT-T-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----A-------T--A------TTTTTCT----ACGT-C--G--AAAA-A-T-GACACCCC-C-CAATCAT-TTTTCT--GCTGGGGTC-AT-TGTTCCTCTTT
gi|13 : aAATTCATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-TAT-T-C----TTCACG-TGGAA-TGTGCTTA-TTTTATCAAAATGACA-CTTTTT-C--TTCAGGTAA--AAGGGT-AA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----GGGGGGGATC-ATTATTTTTTTC-T----ACGT-A--G--AAAT-A-T-GA---CTC-CACGGTCAT-TATTCT--ACGGGGTTC-AT-TATTCTTCTTTA
gi|16 : AATTTATAAG-GG-G-T-CATTATTC-TAACA-GG-GTCA-T-T-T-TCC----TTCATG-GTGAA--GTGCTCA-TTTTATGAAAAGGACA-C--TTT-C--TTCA-GC-G--AAGGAT-CA-CTTTCTT-G----AGAATAATGAACC--------GG-----------------AGGGGGGCG-------TC-A------TTTTC-T----ACGT-AGTG--AAAA-A-TCGA----CC-C-CGGTCAT---TTCT--ATGGGGGCC-AT-TATTCTTCTc
gi|18 : tCAGAG-GTCA-T-T-T-T-TA---TTCATG-TAGAA-TGTCCTC-------CG-AAATGCCA-CTTTTT-CCTTTTAGGCAA--AAGGGT--A-TTTTTCT-ACGGGAGAATAATT-ACC--------GGT----------------GGGGGT--G-------TC-A------TTTTT-CCTAGACTT-A--G--AACA-A-C-GA---CCT-C-CGACGATCTATTCTTGACGGGCGTC-AT-TATTCTTCGTTAg
gi|2 : ATTAAAATGGCAATACTGTACAATCTACCTTACG----CATAACCAG--------CTGAA-T--A--GAAATTCATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-T-T-A-AA---TTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CTTTTTCC--TTCA-GCAA--AAGGGC-CA-
gi|2 : aatatatctcgaaatatcttcaatatgttctcactcgtaataaagagatataactcgttgtgatgagataacgatatcggtgtaaataaatgaaaagtaaaaaaaaaaaagaaagtttttttagtcattttttgactttttaaaagttgattttaatagaaatgatagttactttctctttagtgtaAATAATG-AC---------AG-----------------GGG-----G-------TC-A------TTTT--------------------AA-A-T-GA---CCTTC-CGGTCAT-TATTCT--ACATGGGTC-AT-TATTCTTCTTTAataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataatgacagggggtcattttaaatgaccttccggtcattattctacatgggtcattattcttctttaca
gi|20 : aatatatctcgaaatatcttcaatatgttctcactcgtaataaagagatataactcgttgtgatgagataacgatatcggtgtaaataaatgaaaagtaaaaaaaaaaaagaaagtttttttagtcattttttgactttttaaaagttgattttaatagaaatgatagttactttctctttagtgtaattaaaatggcaatactgtacaatctaccttacgcataaccagctgaatagaaattcataagggggtcattattctacaggggtcatttaaattcacgtagaatgtgctcatttttatgaaaatgacactttttccttcagcaaaagggccaataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaAATTTATAAG-GG-GG--CATTATTC-T-ACAGCG-GTCA-TAT-T-T-C----TTCACG-TGGAA-TGTGCTCATTTTCATGGAAATGGCA-CTTTTT-G--TTCAGGTAA--AATGGA-CA-TTTTTCT-AC-GTAGAA--------------------------------------------------------------------T----ACGT-A--G--AGAA-A-T-GA---CCC-C-CGGTCAT-TATTCT--ACCGGGGTC-AT-TATTCTTCTTTca
gi|21 : ATTTATAAG-GG-GG--CATTATTC-T-ACA-CG-GTCA-TAT-T-T-C----TTCACG-TGGAA-TGTGCTCATTTTCATGGAAATGGCA-CTTTTT-TG-TTCAGGTAA--AATGGA-CA-TTTTTCT-AC-GTAGAA--------------------------------------------------------------------T----ACGT-------AAGA-A-T-GA---CCC-C---GTCAT-TATTCT--ACCGGGGTC-AT-TATTCTTCTTTA
gi|22 : CAGAGTGTCA-T-T-T-T-------TCATGATAGAAATGT-CCCATC-------AAAT-ACAACTTTTG-C--TTTAG-CAACAAAGGGT-CA-TTTTCTT-AC-GGAGA-TAATT-ACG--------GG-----------------GGG-----G-------TC-A-------TTTC-T----ACTTGA--G--AAAA-A-C-GA---CCT-C-CGACCAT-CATTCT--AC--GGCTCTATATATTCTTCGTTA
gi|24 : tAATTTATAAG-GT-GAT-CATTATTC-T-ACAGGG-GTCATT-T-T-T-C----TTCACG-TAGAA-TGTGCTCATTTTT-TCAA--------------------TAGTCAA--AAGGGC-CA-TTTTTTTAAC-GTAGAATAATG-ACC--------GG-----------------AA---------------T-A------TTTTT-T----CCAT----GCCCAAA-A-T-TA---CCC-C-AGGTCAT-TATTCc
gi|25 : TCA-T-T-T-TTC----TTCACG-TAGAA-TGTGC--------ATGAAAATGACA-CTTTAT-C--TTCAGGCAA--AATGGT-CA-TTTTTCC-AT-GCAGAATAATG-ATCGGGGGAGGGG-----------------GGG-----G-------TC-A------TT---------------------GAG-A-T-CATT-TTC-C-CGGTCAT-TATTCT--ACGGGGGTC-AT-TATTCTT
gi|3 : -CATTACTGGT-ACAGGG-ATCA-T-A-G-A-G----ACAACG-TGGAA--GTGTCCAAGTTTAAGAAAATCAAG-CTTTTT-C--TTt
gi|31 : atcaagaaggctgtatgtttttcatagaagaaacaccggttgtcatttttgtcggcatcgatggtaagactgaagttcgcgcgcgagatcccttcattttctcattccattgaG-----------------GGG-----G-------TC-A------TTTTT-TCG--ACAC-A--T--ATAATA-T-AC---TCC-C-CGGTCAT-TATTCT--ACAGAGGTC-AT-TATTCTTCTTTAttttctgtttattagaagtaatacttcatttcgatttcttcctgtagggcaaaaaacgaaactttcgacgaaaatgtcgagattttatcttgataaatggcatgatattgcatcaccaggaaaacgctattatacaatgtacacaagagcaggttttggaaaaagcagaactggatgattggtacacggtgatgaatctggtggacacctaataatcaccagaacgtttgaattagaaccctgaaacatgcactaattgggaataagattaccaaaaggacaatgtataaattatgactcgtac
gi|32 : ATTTATAAG-GG-GGT-CATTATTC-T-ACCGGG-GTAAAT-T-T-T-C----TTCACG-TGGAA-TGTGCTCATTTTCATGAA
gi|34 : GAAAATGACA-CTTTTT-C--TACAGACAA--AAGGTT-AA-TTTTTCT-AC-GTAGAATAATG-ACT--------G
gi|8 : GAATAAATAATGAAAC--AATGAAATTTATAAG-GG-GGT-CATTATTC-C-ACA-----------------------------------CGTGCTCATTTTTATGAAAATGAAA-TTTTTT-C--TTCAGGCAA--AAAGGC-AA-CCTTTCT-AC-GTAGAAAAATT-ACC---------------------------CTG-----G-------TC-A------TTATT-
gi|8 : ttcaatgtgttttcacagaaaataactcgggttgagagaactatatcagtgtaaagaaataaaaagtaaaaaaaaaaaaaagcccatcttcttaatcatttttttttttactataagttgatttcaatagaaatgatcaagtaactttctgtttactgtaattaaaatgacaatTTTC-T----ACGT-A--G--AAAA-A-T-TA---CCC-T--GGTCAT-TATTCT--TCGGGGGCC-AT-cttcgggggccatt
gi|9 : ttcaatgtgttttcacagaaaataactcgggttgagagaactatatcagtgtaaagaaataaaaagtaaaaaaaaaaaaaagcccatcttcttaatcatttttttttttactataagttgatttcaatagaaatgatcaagtaactttctgtttactgtaattaaaatgacaatgaataaataatgaaacaatgaaatttataagggggtcattattccacacgtgctcatttttatgaaaatgaaattttttcttcaggcaaaaaggcaaccTTAAAATGGCAATATTGTACAAT------------------ACCAGAATAAACACTGA--C--AATGGAATTTAAAAGTGGCGGTTCATTATTC-T-ACAGGG--TCT-T-T-T-T-CTTTCTTCACG-TAGAA-TGGGCTCATTTTTATGAAAATGACA-CTTTTT-C--TTCAGGCAC--AAAGGTACATTTTTTCT----GTAAGAT--TG-AGC--------GGGGGGGGGGGGGGGGGGGGGG-----G-------GC-A------TTTTTCT----GTGT-A--GC-AAAA-ACT-GA---CCC-C---GTCAT-TATTCT---CGGGGGTC-AT-TGTTCTTCTTT
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GGTACAGGGCATCATAGAGACAACGTGGACGTGTCCAAATTAAGAAAATCAAGCTTTTTTTTATAAGAGGAAATATTTTATTTCGATTTCTTCCTGTAGGGCAAAAAACGAAACTTTCGACGAAAATGTCGAGATTTTATCTTGATAAATGACATGATATTACATCATCAGGAAAACGCTATTATACAAGGTACACAAGAGCAGGTTTTGGAAAAAGCAGAACTGGGTGATTGGTACACGGTGATGAATCTGGTGGACACCTAATAATAACCAAAAACCCTGAAAAATGCACTAATTGAGAATAAGATTATTCAAAAATGATATATAATCCATTACTATCATGTATGACTCGTATAGACACCAGTACAGCTGTAGTAGAGAAAAAAAAATTAAAGATCGATGTAAGTTCATTTTATGACCAATAGACAGAATTTTCTTAAATAGACGAAATAACTTAATGTGTTTTAATGAGATACATGTAATTCGTTGTGATGAGATAATTATATAT
Unaligned ( gi|4 ): AGAGCTGGATGGTTATCTGAATCTGGGCCGCACCTAACAATCGCCAAAACGTATGAATTGGATCACCTGTTCAGCCGAGACATGTACTAATTGAAAATAAGATTATCAAAGAATAATACATCCATTACAGCTAATTATAACTCATAGACACCCCCTTCCGTAGAAAAAAAAAACACACCACAAGATCCCCAGTGGCAAGAATTTCTCAAATATAGTTTAGTTATGAACATTGTGGGATGTACTTGCCTGCCCAGTAGTAGAGAAAAAAATCAAAGATAAATGCAAGTTCATTTTAGGACTAATAAACAGAATCAAATAGAGGCTTGCATCTCGAGATAACTTCAATGCGTTTTCACTAGTAATAACGAGATCACTCGTTGTGATGAGATAGCTAGCTATATCGGTGTAAATAAATGAAAAGT
Unaligned ( gi|5 ): CATTGAAACTATAGGCACAGGACATCATTAGACAACATGGACGTGTCCGAGTTTAAAAAAAATAATACTTTTTATTAATAAGAAAAAAATTCTTCATGTAAGTAGAAGAAAGGAAACTTTTGACAAAAATGTAAAGACTTTATCTTGTTAAATTGCATATTACAGCCACAGAAAAACACTCAAACACCACTGCAGGTTTTGAAAAGTACATATCTGGATGATTGTCTTAAACGGGTACACAGTGGGCACCTAGGAATCACCAAACGTTTGAATTAAAACCCTGGTTCAGTTGAAACATACACGTACTATGTCTGCTAAATTTCCAGTAACTGAGAATGAAATTATTACAGAATAATATGTTCATTTGTGCTTTATGATTCATAGATCCGCCACCGTAGAGAAAAACCAAAA
Unaligned ( gi|6 ): GCAGAACTGGATGATTGGTACACGGTGATGAATCTGGTGGACACCTAATAATCACCAGAACGTTTGAATTAGAACCCTGAAACATGCACTAATTGGGAATAAGATTACCAAAAGGACAATGTATAAATTATGACTCGTACAGCCCCCCCCCCCTCCCCATTTCTGTAGAAAAAAAAAACACCACACCACACAGTGACAAGAATTTCACAAATATAGTTTAGTTATGAAATCTTTCAGTATAGCTGTAGTAGAGAAAAAAAAACATTTAAAGATCAACACTTCAATGTGTTTTCACAGAAAATAACTCGGGTTGAGAGAACTATATCAGTGTAAAGAAATAAAAAGTA
Unaligned ( gi|7 ): TTTCTTCTGTCCATTCGTTACTCAAAATTAAAAGTTCTTTTTTGCTCATCTTAAGAAATAAAAAAAAATCACCTTGGAAGAATGTTTAATGATTTTTATCTTTTGATTTAAATGGCATATTGCATCACCAGGAAAACGCTAAATTACAATCTACACATGTCCGGGTTTTGAAAAGTACAGAGCTGGATGATTATCTTAAACGGGTACACAGTGATGAATCTGATGGGCACCCAAGAATCACCAAAACGTTTGAACTGGAATCCTTGTTCAGCCGAAACGTGCACTAATTGAGAATAAGATTATTAAAGAATATATCCATTAGCGCTAATTATGACTCATAG
Unaligned ( gi|14 ): CTTTAAGAAAGTAAAACTTTTTTTGGAAAAGAAAAGTATTTCACATCGATTTCTTCCTGAAGGCAGAAAAACGAAAACTTTCTATGATTTTATCTTAATAAATGGCATTTTGCATCACCAGGAAAACGCCATTACAATGTACACAAGTGCAGGTTTTGAAAAAATATAGAGCTGGATGATTATCTTAAACGTGTACA
Unaligned ( gi|15 ): CTTTAAGAAAGTAAAACTTTTTTTGGAAAAGAAAAGTATTTCACATCGATTTCTTCCTGAAGGCAGAAAAACGAAACTTTCTATGATTTTATCTTAATAAATGGCATTTTGCATCACCAGGAAAACGCCATTACAATGTACACAAGTGCAGGTTTTGAAAAATATAGAGCTGGATGATTATCTTAAACGTGTACA
Unaligned ( gi|17 ): ATCAAAGTTGGCTGTATTTTTCAAAATAAAACACCCGTTGTCATTTTTGTCGGCATCGATGTTAAGACTGAATTTTCTCATTGCATTGACATTAGTACAGGGCATCATAGAGACAACATTTAAGTGTCCAACTTTAAGAAAATAATTTTTTTGTTGGGGGGGATCAGAAAAAAAT
Unaligned ( gi|19 ): GCAAAATGCACTAAGTGAAATAAATAAATAAAGAATAAAATACATTATAGCAATTGATTTCTCATGACAACCCCCCTCCGTAGGAAAAAAACCTTAGAAGAACATAATGACACGAATTTCACAAATTCAGTTAGTTAGACACTCTTTTGCAGTACTTGCTTGCATAGTATGT
Unaligned ( gi|23 ): GATTTTATCTTGATTAATGGCATTATGCATAACAAGGCTACTGCAGGTTTTGAATAGTGCAGAGCTGGATGACTATGATCTTAAACGGGTACCAGTACACAGGGATGAATCTGGTGGGCACCTAAGAATCGCAAAAAACGTGTGAATTGTAACCTTTGTT
Unaligned ( gi|26 ): ATAACTCGTGATGAGACAATTATATTAATATCGGCGTAATAAAGAAAAAAAGTCATCTTAATAATTTGTTCACTTGAAATTGATTTTAATAGAAATGATTAAGTTACTTTCGGTTTACTGCAATTAAA
Unaligned ( gi|27 ): AATGCATGTTTTCACTCGTAACATGTAAACCGAGAATACTCGTTGTGATGAGATAACTTTATCGGTTGTTATAAATAAAAAGTGGGGGGAAAATTTTTTTAATCATATTCT
Unaligned ( gi|28 ): AGTCCAGTAGTAGAGAAACAAACATTAAAGATCAATGCATGTTGATTGTATGACTAATAAACAAACTTTTGTTGAATAGAGACTTGTATCTCAAAAAAACGTCAATA
Unaligned ( gi|29 ): ACACCTATTAGTGCCAACTATAACTCATAGACTCTCCCCTTTCCGTAGAAAAAAAAACACCACAAGAACCCCTAACCACAGTGGCAAGAATTTCACAAATA
Unaligned ( gi|30 ): AGTGGTAGAGAAAAAGAATGAAAGATGAAACTAAGTTCATTTTATGACTGATAGACGGAATGGCTTTAAATAGAGGCATGTACATGGAAATA
Unaligned ( gi|33 ): CCCCCTTCCATAGAAAAAACACCATAAGAACCCCTAACACAGTGGCAAGGATTTTACACAAATATA
Unaligned ( gi|35 ): TATCTTTAAAGTATTTTAACTCGTAATGACGAAATAACTCGTTATCAT
Unaligned ( gi|36 ): GTTTTCATTACAAATGCTTTATGTTCATAAAATAGAAGGGAG
Unaligned ( gi|37 ): TGGTAATTTTAATTAAATCACTCATTCGTGATGAGAC
Alignments
lowQualScore : 2222222 11111 111111 4444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 6 0 1111111 1 5555555 55555 3 3 3 3 3 3 1 2 5 5 2 2 444444 2 2 2 2 2 66 33 33 2 3 3 2 1111111111111111111111111111111111111111111111111111111111111111111111111111 2 2 2 888 2 55 2 44 2 3 3
lowQualScore : . . ....... . ....... ..... . . . . . . . . . . . . ...... . . . . . .. .. .. . . . . ............................................................................ . . . ... . .. . .. . . .
lowQualScore : 4 6 2222222 7 3333333 88888 2 3 3 1 1 1 7 7 0 0 5 5 111111 5 5 5 7 7 33 99 66 9 1 1 9 7777777777777777777777777777777777777777777777777777777777777777777777777777 9 9 9 999 9 44 9 22 1 1 1
consensus : ATTAAAATGGCAATATTGTACAGTCTACCTTGCG----CGTAACCAGAATAAACACTGAA-C--AATGAAATTTATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-T-T-T-C----TTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CTTTTT-C--TTCAGGCAA--AAGGGT-CA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----G-------TC-A------TTTTT-T----ACGT-A--G--AAAA-A-T-GA---CCC-C-CGGTCAT-TATTCT--ACGGGGGTC-AT-TATTCTTCTTTA
Reference ( family-3151 ) : ATTAAAATGGCAATATTGTACAGTCTACCTTGCG----CGTAACCAGAATAAACACTGAA-C--AATGAAATTTATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-T-T-T-C----TTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CTTTTT-C--TTCAGGCAA--AAGGGT-CA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----G-------TC-A------TTTTT-T----ACGT-A--G--AAAA-A-T-GA---CCC-C-CGGTCAT-TATTCT--ACGGGGGTC-AT-TATTCTTCTTTA
gi|10 : ATTAAAATGGCAATATTGTACAGTCTACCTTGCA----CATAACCAGGATAAACACTGAA-CCCAATGACATTTGTAAG-GG-TGT-CACTATTC-T-ACAGGG-GTCA-T-T-T-T-C----GTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CCTTTT-C--TTCAGGCAA--AAGGGT-CA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------AGG-----G-------TCAA------TTTCT-T----ACGT-A--G--AAAA-A-T-GA---CCT-T-CGGTCTT-TATTCT--ACGGAGG------TATTCTTCTTTA
gi|11 : TTTACCTTGTGAACACATAACCAGAAC-------GAA-C--AATGGAATTCATAAA-AG-TGT-CAT--------------------T-T-T-T-C----TTTACG-TAGAA-TGTGC
gi|12 : cgcgtatcttgaaatagcttcaatgtgttttcactcataataacgagataactcgttgttatgcaaaacaatatcgtagtaaataaatgaaaaaaaaaatatttgaactttttattcattttaagttgattttaatagaagtaataacgttacATAAAAACTGCAATATTGTCCAGTTTACCTGGCA----TGTAACCAGAATAAATAC----------TGAAATATATAA--GG-GAT-CATTATTC-T-ACAGAG-GCCA-T-T-TAT-C----TTCACG-TAGAA-TGTGCCCATTTTTATGAAAATGACA------------------------------A-TTTTT-T-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----A-------T--A------TTTTTCT----ACGT-C--G--AAAA-A-T-GACACCCC-C-CAATCAT-TTTTCT--GCTGGGGTC-AT-TGTTCCTCTTT
gi|13 : aAATTCATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-TAT-T-C----TTCACG-TGGAA-TGTGCTTA-TTTTATCAAAATGACA-CTTTTT-C--TTCAGGTAA--AAGGGT-AA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----GGGGGGGATC-ATTATTTTTTTC-T----ACGT-A--G--AAAT-A-T-GA---CTC-CACGGTCAT-TATTCT--ACGGGGTTC-AT-TATTCTTCTTTA
gi|16 : AATTTATAAG-GG-G-T-CATTATTC-TAACA-GG-GTCA-T-T-T-TCC----TTCATG-GTGAA--GTGCTCA-TTTTATGAAAAGGACA-C--TTT-C--TTCA-GC-G--AAGGAT-CA-CTTTCTT-G----AGAATAATGAACC--------GG-----------------AGGGGGGCG-------TC-A------TTTTC-T----ACGT-AGTG--AAAA-A-TCGA----CC-C-CGGTCAT---TTCT--ATGGGGGCC-AT-TATTCTTCTc
gi|18 : tCAGAG-GTCA-T-T-T-T-TA---TTCATG-TAGAA-TGTCCTC-------CG-AAATGCCA-CTTTTT-CCTTTTAGGCAA--AAGGGT--A-TTTTTCT-ACGGGAGAATAATT-ACC--------GGT----------------GGGGGT--G-------TC-A------TTTTT-CCTAGACTT-A--G--AACA-A-C-GA---CCT-C-CGACGATCTATTCTTGACGGGCGTC-AT-TATTCTTCGTTAg
gi|2 : ATTAAAATGGCAATACTGTACAATCTACCTTACG----CATAACCAG--------CTGAA-T--A--GAAATTCATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-T-T-A-AA---TTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CTTTTTCC--TTCA-GCAA--AAGGGC-CA-
gi|2 : aatatatctcgaaatatcttcaatatgttctcactcgtaataaagagatataactcgttgtgatgagataacgatatcggtgtaaataaatgaaaagtaaaaaaaaaaaagaaagtttttttagtcattttttgactttttaaaagttgattttaatagaaatgatagttactttctctttagtgtaAATAATG-AC---------AG-----------------GGG-----G-------TC-A------TTTT--------------------AA-A-T-GA---CCTTC-CGGTCAT-TATTCT--ACATGGGTC-AT-TATTCTTCTTTAataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataatgacagggggtcattttaaatgaccttccggtcattattctacatgggtcattattcttctttaca
gi|20 : aatatatctcgaaatatcttcaatatgttctcactcgtaataaagagatataactcgttgtgatgagataacgatatcggtgtaaataaatgaaaagtaaaaaaaaaaaagaaagtttttttagtcattttttgactttttaaaagttgattttaatagaaatgatagttactttctctttagtgtaattaaaatggcaatactgtacaatctaccttacgcataaccagctgaatagaaattcataagggggtcattattctacaggggtcatttaaattcacgtagaatgtgctcatttttatgaaaatgacactttttccttcagcaaaagggccaataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaAATTTATAAG-GG-GG--CATTATTC-T-ACAGCG-GTCA-TAT-T-T-C----TTCACG-TGGAA-TGTGCTCATTTTCATGGAAATGGCA-CTTTTT-G--TTCAGGTAA--AATGGA-CA-TTTTTCT-AC-GTAGAA--------------------------------------------------------------------T----ACGT-A--G--AGAA-A-T-GA---CCC-C-CGGTCAT-TATTCT--ACCGGGGTC-AT-TATTCTTCTTTca
gi|21 : ATTTATAAG-GG-GG--CATTATTC-T-ACA-CG-GTCA-TAT-T-T-C----TTCACG-TGGAA-TGTGCTCATTTTCATGGAAATGGCA-CTTTTT-TG-TTCAGGTAA--AATGGA-CA-TTTTTCT-AC-GTAGAA--------------------------------------------------------------------T----ACGT-------AAGA-A-T-GA---CCC-C---GTCAT-TATTCT--ACCGGGGTC-AT-TATTCTTCTTTA
gi|22 : CAGAGTGTCA-T-T-T-T-------TCATGATAGAAATGT-CCCATC-------AAAT-ACAACTTTTG-C--TTTAG-CAACAAAGGGT-CA-TTTTCTT-AC-GGAGA-TAATT-ACG--------GG-----------------GGG-----G-------TC-A-------TTTC-T----ACTTGA--G--AAAA-A-C-GA---CCT-C-CGACCAT-CATTCT--AC--GGCTCTATATATTCTTCGTTA
gi|24 : tAATTTATAAG-GT-GAT-CATTATTC-T-ACAGGG-GTCATT-T-T-T-C----TTCACG-TAGAA-TGTGCTCATTTTT-TCAA--------------------TAGTCAA--AAGGGC-CA-TTTTTTTAAC-GTAGAATAATG-ACC--------GG-----------------AA---------------T-A------TTTTT-T----CCAT----GCCCAAA-A-T-TA---CCC-C-AGGTCAT-TATTCc
gi|25 : TCA-T-T-T-TTC----TTCACG-TAGAA-TGTGC--------ATGAAAATGACA-CTTTAT-C--TTCAGGCAA--AATGGT-CA-TTTTTCC-AT-GCAGAATAATG-ATCGGGGGAGGGG-----------------GGG-----G-------TC-A------TT---------------------GAG-A-T-CATT-TTC-C-CGGTCAT-TATTCT--ACGGGGGTC-AT-TATTCTT
gi|3 : -CATTACTGGT-ACAGGG-ATCA-T-A-G-A-G----ACAACG-TGGAA--GTGTCCAAGTTTAAGAAAATCAAG-CTTTTT-C--TTt
gi|31 : atcaagaaggctgtatgtttttcatagaagaaacaccggttgtcatttttgtcggcatcgatggtaagactgaagttcgcgcgcgagatcccttcattttctcattccattgaG-----------------GGG-----G-------TC-A------TTTTT-TCG--ACAC-A--T--ATAATA-T-AC---TCC-C-CGGTCAT-TATTCT--ACAGAGGTC-AT-TATTCTTCTTTAttttctgtttattagaagtaatacttcatttcgatttcttcctgtagggcaaaaaacgaaactttcgacgaaaatgtcgagattttatcttgataaatggcatgatattgcatcaccaggaaaacgctattatacaatgtacacaagagcaggttttggaaaaagcagaactggatgattggtacacggtgatgaatctggtggacacctaataatcaccagaacgtttgaattagaaccctgaaacatgcactaattgggaataagattaccaaaaggacaatgtataaattatgactcgtac
gi|32 : ATTTATAAG-GG-GGT-CATTATTC-T-ACCGGG-GTAAAT-T-T-T-C----TTCACG-TGGAA-TGTGCTCATTTTCATGAA
gi|34 : GAAAATGACA-CTTTTT-C--TACAGACAA--AAGGTT-AA-TTTTTCT-AC-GTAGAATAATG-ACT--------G
gi|8 : GAATAAATAATGAAAC--AATGAAATTTATAAG-GG-GGT-CATTATTC-C-ACA-----------------------------------CGTGCTCATTTTTATGAAAATGAAA-TTTTTT-C--TTCAGGCAA--AAAGGC-AA-CCTTTCT-AC-GTAGAAAAATT-ACC---------------------------CTG-----G-------TC-A------TTATT-
gi|8 : ttcaatgtgttttcacagaaaataactcgggttgagagaactatatcagtgtaaagaaataaaaagtaaaaaaaaaaaaaagcccatcttcttaatcatttttttttttactataagttgatttcaatagaaatgatcaagtaactttctgtttactgtaattaaaatgacaatTTTC-T----ACGT-A--G--AAAA-A-T-TA---CCC-T--GGTCAT-TATTCT--TCGGGGGCC-AT-cttcgggggccatt
gi|9 : ttcaatgtgttttcacagaaaataactcgggttgagagaactatatcagtgtaaagaaataaaaagtaaaaaaaaaaaaaagcccatcttcttaatcatttttttttttactataagttgatttcaatagaaatgatcaagtaactttctgtttactgtaattaaaatgacaatgaataaataatgaaacaatgaaatttataagggggtcattattccacacgtgctcatttttatgaaaatgaaattttttcttcaggcaaaaaggcaaccTTAAAATGGCAATATTGTACAAT------------------ACCAGAATAAACACTGA--C--AATGGAATTTAAAAGTGGCGGTTCATTATTC-T-ACAGGG--TCT-T-T-T-T-CTTTCTTCACG-TAGAA-TGGGCTCATTTTTATGAAAATGACA-CTTTTT-C--TTCAGGCAC--AAAGGTACATTTTTTCT----GTAAGAT--TG-AGC--------GGGGGGGGGGGGGGGGGGGGGG-----G-------GC-A------TTTTTCT----GTGT-A--GC-AAAA-ACT-GA---CCC-C---GTCAT-TATTCT---CGGGGGTC-AT-TGTTCTTCTTT
blockSeqs : T GAACACA A AAATAAT AAC A T C T G A G T T A A A CTTTC A A T A C CT CA AC T A G A CGGGGGGGGGGGGGGGGGGGGGGGGCATTTTTCTGTGTAGC T C C CAC T AC C TG T T A
blockSeqs : T ATG A AAACACT AC A . . . . . G . A A . . CC . . T . . G . A . . . . CGGGGGGGGGGGGATCATTATTTTTTTCTACGTAG . . . TT . C . . G . .
blockSeqs : C GCA A AAATAC AT A . . . . . G . . . . . TA . . T . . . . C . . . . CGGTGGGGGTGTCATTTTTCCTAGACTTAG . . . . . C . . G . .
blockSeqs : . . A CT C . . . . . . G . . . . . AA . . T . . . . C . . . . CGGAGGGGGGCGTCATTTTCTACGTAGTG . . . . . C . . G . .
blockSeqs : . . . . . . . . . G . . . . . TC . . T . . . . C . . . . CGGGGGATATTTTTCTACGTCG . . . . . C . . A . .
blockSeqs : . . . . . G . . . . . C . . T . . . . C . . . . GGGGGGGTCATTTCTACTTGAG . . . . . C . . C . .
blockSeqs : . . . . . G . . . . . C . . A . . . . C . . . . CGGAATATTTTTTCCATGCC . . . . . C . . C . .
blockSeqs : . . . . . G . . . . . C . . T . . . . C . . . . CGGGGGAGGGGGGGGTCATT . . . . . A . . G . .
blockSeqs : . . . . . G . . . . . C . . T . . . . C . . . . AGGGGGTCATTTT . . . . . C . . A . .
blockSeqs : . . . . . G . . . . . C . . T . . . . A . . . . TACGTAG . . . . . C . . G . .
blockSeqs : . . . . . . . . . . . C . . . . . . . A . . . . TACGT . . . . . . . . G . .
blockSeqs : . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . C . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : AC***
originalCons : ATTAAAATGGCAATATTGTACAGTCTACCTTGCG----CGTAACCAGAATAAACACTGAA-C--AATGAAATTTATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-T-T-T-C----TTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CTTTTT-C--TTCAGGCAA--AAGGGT-CA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----G-------TC-A------TTTTT-T----ACGT-A--G--AAAA-A-T-GA---CCC-C-CGGTCAT-TATTCT--ACGGGGGTC-AT-TATTCTTCTTTA
finalCons : ATTAAAATGGCAATATTGTACAGTCTACCTTGCG----CGTAACCAGAATAAACACTGAAC---AATGAAATTTATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-T-T-T-C----TTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CTTTTT-C--TTCAGGCAA--AAGGGT-CA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----G-------TC-A------TTTTT-T----ACGT-A--G--AAAA-A-T-GA---CCC-C-CGGTCAT-TATTCT--ACGGGGGTC-AT-TATTCTTCTTTA
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GGTACAGGGCATCATAGAGACAACGTGGACGTGTCCAAATTAAGAAAATCAAGCTTTTTTTTATAAGAGGAAATATTTTATTTCGATTTCTTCCTGTAGGGCAAAAAACGAAACTTTCGACGAAAATGTCGAGATTTTATCTTGATAAATGACATGATATTACATCATCAGGAAAACGCTATTATACAAGGTACACAAGAGCAGGTTTTGGAAAAAGCAGAACTGGGTGATTGGTACACGGTGATGAATCTGGTGGACACCTAATAATAACCAAAAACCCTGAAAAATGCACTAATTGAGAATAAGATTATTCAAAAATGATATATAATCCATTACTATCATGTATGACTCGTATAGACACCAGTACAGCTGTAGTAGAGAAAAAAAAATTAAAGATCGATGTAAGTTCATTTTATGACCAATAGACAGAATTTTCTTAAATAGACGAAATAACTTAATGTGTTTTAATGAGATACATGTAATTCGTTGTGATGAGATAATTATATAT
Unaligned ( gi|4 ): AGAGCTGGATGGTTATCTGAATCTGGGCCGCACCTAACAATCGCCAAAACGTATGAATTGGATCACCTGTTCAGCCGAGACATGTACTAATTGAAAATAAGATTATCAAAGAATAATACATCCATTACAGCTAATTATAACTCATAGACACCCCCTTCCGTAGAAAAAAAAAACACACCACAAGATCCCCAGTGGCAAGAATTTCTCAAATATAGTTTAGTTATGAACATTGTGGGATGTACTTGCCTGCCCAGTAGTAGAGAAAAAAATCAAAGATAAATGCAAGTTCATTTTAGGACTAATAAACAGAATCAAATAGAGGCTTGCATCTCGAGATAACTTCAATGCGTTTTCACTAGTAATAACGAGATCACTCGTTGTGATGAGATAGCTAGCTATATCGGTGTAAATAAATGAAAAGT
Unaligned ( gi|5 ): CATTGAAACTATAGGCACAGGACATCATTAGACAACATGGACGTGTCCGAGTTTAAAAAAAATAATACTTTTTATTAATAAGAAAAAAATTCTTCATGTAAGTAGAAGAAAGGAAACTTTTGACAAAAATGTAAAGACTTTATCTTGTTAAATTGCATATTACAGCCACAGAAAAACACTCAAACACCACTGCAGGTTTTGAAAAGTACATATCTGGATGATTGTCTTAAACGGGTACACAGTGGGCACCTAGGAATCACCAAACGTTTGAATTAAAACCCTGGTTCAGTTGAAACATACACGTACTATGTCTGCTAAATTTCCAGTAACTGAGAATGAAATTATTACAGAATAATATGTTCATTTGTGCTTTATGATTCATAGATCCGCCACCGTAGAGAAAAACCAAAA
Unaligned ( gi|6 ): GCAGAACTGGATGATTGGTACACGGTGATGAATCTGGTGGACACCTAATAATCACCAGAACGTTTGAATTAGAACCCTGAAACATGCACTAATTGGGAATAAGATTACCAAAAGGACAATGTATAAATTATGACTCGTACAGCCCCCCCCCCCTCCCCATTTCTGTAGAAAAAAAAAACACCACACCACACAGTGACAAGAATTTCACAAATATAGTTTAGTTATGAAATCTTTCAGTATAGCTGTAGTAGAGAAAAAAAAACATTTAAAGATCAACACTTCAATGTGTTTTCACAGAAAATAACTCGGGTTGAGAGAACTATATCAGTGTAAAGAAATAAAAAGTA
Unaligned ( gi|7 ): TTTCTTCTGTCCATTCGTTACTCAAAATTAAAAGTTCTTTTTTGCTCATCTTAAGAAATAAAAAAAAATCACCTTGGAAGAATGTTTAATGATTTTTATCTTTTGATTTAAATGGCATATTGCATCACCAGGAAAACGCTAAATTACAATCTACACATGTCCGGGTTTTGAAAAGTACAGAGCTGGATGATTATCTTAAACGGGTACACAGTGATGAATCTGATGGGCACCCAAGAATCACCAAAACGTTTGAACTGGAATCCTTGTTCAGCCGAAACGTGCACTAATTGAGAATAAGATTATTAAAGAATATATCCATTAGCGCTAATTATGACTCATAG
Unaligned ( gi|14 ): CTTTAAGAAAGTAAAACTTTTTTTGGAAAAGAAAAGTATTTCACATCGATTTCTTCCTGAAGGCAGAAAAACGAAAACTTTCTATGATTTTATCTTAATAAATGGCATTTTGCATCACCAGGAAAACGCCATTACAATGTACACAAGTGCAGGTTTTGAAAAAATATAGAGCTGGATGATTATCTTAAACGTGTACA
Unaligned ( gi|15 ): CTTTAAGAAAGTAAAACTTTTTTTGGAAAAGAAAAGTATTTCACATCGATTTCTTCCTGAAGGCAGAAAAACGAAACTTTCTATGATTTTATCTTAATAAATGGCATTTTGCATCACCAGGAAAACGCCATTACAATGTACACAAGTGCAGGTTTTGAAAAATATAGAGCTGGATGATTATCTTAAACGTGTACA
Unaligned ( gi|17 ): ATCAAAGTTGGCTGTATTTTTCAAAATAAAACACCCGTTGTCATTTTTGTCGGCATCGATGTTAAGACTGAATTTTCTCATTGCATTGACATTAGTACAGGGCATCATAGAGACAACATTTAAGTGTCCAACTTTAAGAAAATAATTTTTTTGTTGGGGGGGATCAGAAAAAAAT
Unaligned ( gi|19 ): GCAAAATGCACTAAGTGAAATAAATAAATAAAGAATAAAATACATTATAGCAATTGATTTCTCATGACAACCCCCCTCCGTAGGAAAAAAACCTTAGAAGAACATAATGACACGAATTTCACAAATTCAGTTAGTTAGACACTCTTTTGCAGTACTTGCTTGCATAGTATGT
Unaligned ( gi|23 ): GATTTTATCTTGATTAATGGCATTATGCATAACAAGGCTACTGCAGGTTTTGAATAGTGCAGAGCTGGATGACTATGATCTTAAACGGGTACCAGTACACAGGGATGAATCTGGTGGGCACCTAAGAATCGCAAAAAACGTGTGAATTGTAACCTTTGTT
Unaligned ( gi|26 ): ATAACTCGTGATGAGACAATTATATTAATATCGGCGTAATAAAGAAAAAAAGTCATCTTAATAATTTGTTCACTTGAAATTGATTTTAATAGAAATGATTAAGTTACTTTCGGTTTACTGCAATTAAA
Unaligned ( gi|27 ): AATGCATGTTTTCACTCGTAACATGTAAACCGAGAATACTCGTTGTGATGAGATAACTTTATCGGTTGTTATAAATAAAAAGTGGGGGGAAAATTTTTTTAATCATATTCT
Unaligned ( gi|28 ): AGTCCAGTAGTAGAGAAACAAACATTAAAGATCAATGCATGTTGATTGTATGACTAATAAACAAACTTTTGTTGAATAGAGACTTGTATCTCAAAAAAACGTCAATA
Unaligned ( gi|29 ): ACACCTATTAGTGCCAACTATAACTCATAGACTCTCCCCTTTCCGTAGAAAAAAAAACACCACAAGAACCCCTAACCACAGTGGCAAGAATTTCACAAATA
Unaligned ( gi|30 ): AGTGGTAGAGAAAAAGAATGAAAGATGAAACTAAGTTCATTTTATGACTGATAGACGGAATGGCTTTAAATAGAGGCATGTACATGGAAATA
Unaligned ( gi|33 ): CCCCCTTCCATAGAAAAAACACCATAAGAACCCCTAACACAGTGGCAAGGATTTTACACAAATATA
Unaligned ( gi|35 ): TATCTTTAAAGTATTTTAACTCGTAATGACGAAATAACTCGTTATCAT
Unaligned ( gi|36 ): GTTTTCATTACAAATGCTTTATGTTCATAAAATAGAAGGGAG
Unaligned ( gi|37 ): TGGTAATTTTAATTAAATCACTCATTCGTGATGAGAC
Alignments
lowQualScore : 2222222 11111 111111 4444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 6 0 1111111 1 5555555 55555 3 3 3 3 3 3 1 2 5 5 2 2 444444 2 2 2 2 2 66 33 33 2 3 3 2 1111111111111111111111111111111111111111111111111111111111111111111111111111 2 2 2 888 2 55 2 44 2 3 3
lowQualScore : . . ....... . ....... ..... . . . . . . . . . . . . ...... . . . . . .. .. .. . . . . ............................................................................ . . . ... . .. . .. . . .
lowQualScore : 4 6 2222222 7 3333333 88888 2 3 3 1 1 1 7 7 0 0 5 5 111111 5 5 5 7 7 33 99 66 9 1 1 9 7777777777777777777777777777777777777777777777777777777777777777777777777777 9 9 9 999 9 44 9 22 1 1 1
consensus : ATTAAAATGGCAATATTGTACAGTCTACCTTGCG----CGTAACCAGAATAAACACTGAA-C--AATGAAATTTATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-T-T-T-C----TTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CTTTTT-C--TTCAGGCAA--AAGGGT-CA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----G-------TC-A------TTTTT-T----ACGT-A--G--AAAA-A-T-GA---CCC-C-CGGTCAT-TATTCT--ACGGGGGTC-AT-TATTCTTCTTTA
Reference ( family-3151 ) : ATTAAAATGGCAATATTGTACAGTCTACCTTGCG----CGTAACCAGAATAAACACTGAA-C--AATGAAATTTATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-T-T-T-C----TTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CTTTTT-C--TTCAGGCAA--AAGGGT-CA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----G-------TC-A------TTTTT-T----ACGT-A--G--AAAA-A-T-GA---CCC-C-CGGTCAT-TATTCT--ACGGGGGTC-AT-TATTCTTCTTTA
gi|10 : ATTAAAATGGCAATATTGTACAGTCTACCTTGCA----CATAACCAGGATAAACACTGAA-CCCAATGACATTTGTAAG-GG-TGT-CACTATTC-T-ACAGGG-GTCA-T-T-T-T-C----GTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CCTTTT-C--TTCAGGCAA--AAGGGT-CA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------AGG-----G-------TCAA------TTTCT-T----ACGT-A--G--AAAA-A-T-GA---CCT-T-CGGTCTT-TATTCT--ACGGAGG------TATTCTTCTTTA
gi|11 : TTTACCTTGTGAACACATAACCAGAAC-------GAA-C--AATGGAATTCATAAA-AG-TGT-CAT--------------------T-T-T-T-C----TTTACG-TAGAA-TGTGC
gi|12 : cgcgtatcttgaaatagcttcaatgtgttttcactcataataacgagataactcgttgttatgcaaaacaatatcgtagtaaataaatgaaaaaaaaaatatttgaactttttattcattttaagttgattttaatagaagtaataacgttacATAAAAACTGCAATATTGTCCAGTTTACCTGGCA----TGTAACCAGAATAAATAC----------TGAAATATATAA--GG-GAT-CATTATTC-T-ACAGAG-GCCA-T-T-TAT-C----TTCACG-TAGAA-TGTGCCCATTTTTATGAAAATGACA------------------------------A-TTTTT-T-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----A-------T--A------TTTTTCT----ACGT-C--G--AAAA-A-T-GACACCCC-C-CAATCAT-TTTTCT--GCTGGGGTC-AT-TGTTCCTCTTT
gi|13 : aAATTCATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-TAT-T-C----TTCACG-TGGAA-TGTGCTTA-TTTTATCAAAATGACA-CTTTTT-C--TTCAGGTAA--AAGGGT-AA-TTTTTCT-AC-GTAGAATAATG-ACC--------GG-----------------GGG-----GGGGGGGATC-ATTATTTTTTTC-T----ACGT-A--G--AAAT-A-T-GA---CTC-CACGGTCAT-TATTCT--ACGGGGTTC-AT-TATTCTTCTTTA
gi|16 : AATTTATAAG-GG-G-T-CATTATTC-TAACA-GG-GTCA-T-T-T-TCC----TTCATG-GTGAA--GTGCTCA-TTTTATGAAAAGGACA-C--TTT-C--TTCA-GC-G--AAGGAT-CA-CTTTCTT-G----AGAATAATGAACC--------GG-----------------AGGGGGGCG-------TC-A------TTTTC-T----ACGT-AGTG--AAAA-A-TCGA----CC-C-CGGTCAT---TTCT--ATGGGGGCC-AT-TATTCTTCTc
gi|18 : tCAGAG-GTCA-T-T-T-T-TA---TTCATG-TAGAA-TGTCCTC-------CG-AAATGCCA-CTTTTT-CCTTTTAGGCAA--AAGGGT--A-TTTTTCT-ACGGGAGAATAATT-ACC--------GGT----------------GGGGGT--G-------TC-A------TTTTT-CCTAGACTT-A--G--AACA-A-C-GA---CCT-C-CGACGATCTATTCTTGACGGGCGTC-AT-TATTCTTCGTTAg
gi|2 : ATTAAAATGGCAATACTGTACAATCTACCTTACG----CATAACCAG--------CTGAA-T--A--GAAATTCATAAG-GG-GGT-CATTATTC-T-ACAGGG-GTCA-T-T-T-A-AA---TTCACG-TAGAA-TGTGCTCATTTTTATGAAAATGACA-CTTTTTCC--TTCA-GCAA--AAGGGC-CA-
gi|2 : aatatatctcgaaatatcttcaatatgttctcactcgtaataaagagatataactcgttgtgatgagataacgatatcggtgtaaataaatgaaaagtaaaaaaaaaaaagaaagtttttttagtcattttttgactttttaaaagttgattttaatagaaatgatagttactttctctttagtgtaAATAATG-AC---------AG-----------------GGG-----G-------TC-A------TTTT--------------------AA-A-T-GA---CCTTC-CGGTCAT-TATTCT--ACATGGGTC-AT-TATTCTTCTTTAataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataatgacagggggtcattttaaatgaccttccggtcattattctacatgggtcattattcttctttaca
gi|20 : aatatatctcgaaatatcttcaatatgttctcactcgtaataaagagatataactcgttgtgatgagataacgatatcggtgtaaataaatgaaaagtaaaaaaaaaaaagaaagtttttttagtcattttttgactttttaaaagttgattttaatagaaatgatagttactttctctttagtgtaattaaaatggcaatactgtacaatctaccttacgcataaccagctgaatagaaattcataagggggtcattattctacaggggtcatttaaattcacgtagaatgtgctcatttttatgaaaatgacactttttccttcagcaaaagggccaataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaAATTTATAAG-GG-GG--CATTATTC-T-ACAGCG-GTCA-TAT-T-T-C----TTCACG-TGGAA-TGTGCTCATTTTCATGGAAATGGCA-CTTTTT-G--TTCAGGTAA--AATGGA-CA-TTTTTCT-AC-GTAGAA--------------------------------------------------------------------T----ACGT-A--G--AGAA-A-T-GA---CCC-C-CGGTCAT-TATTCT--ACCGGGGTC-AT-TATTCTTCTTTca
gi|21 : ATTTATAAG-GG-GG--CATTATTC-T-ACA-CG-GTCA-TAT-T-T-C----TTCACG-TGGAA-TGTGCTCATTTTCATGGAAATGGCA-CTTTTT-TG-TTCAGGTAA--AATGGA-CA-TTTTTCT-AC-GTAGAA--------------------------------------------------------------------T----ACGT-------AAGA-A-T-GA---CCC-C---GTCAT-TATTCT--ACCGGGGTC-AT-TATTCTTCTTTA
gi|22 : CAGAGTGTCA-T-T-T-T-------TCATGATAGAAATGT-CCCATC-------AAAT-ACAACTTTTG-C--TTTAG-CAACAAAGGGT-CA-TTTTCTT-AC-GGAGA-TAATT-ACG--------GG-----------------GGG-----G-------TC-A-------TTTC-T----ACTTGA--G--AAAA-A-C-GA---CCT-C-CGACCAT-CATTCT--AC--GGCTCTATATATTCTTCGTTA
gi|24 : tAATTTATAAG-GT-GAT-CATTATTC-T-ACAGGG-GTCATT-T-T-T-C----TTCACG-TAGAA-TGTGCTCATTTTT-TCAA--------------------TAGTCAA--AAGGGC-CA-TTTTTTTAAC-GTAGAATAATG-ACC--------GG-----------------AA---------------T-A------TTTTT-T----CCAT----GCCCAAA-A-T-TA---CCC-C-AGGTCAT-TATTCc
gi|25 : TCA-T-T-T-TTC----TTCACG-TAGAA-TGTGC--------ATGAAAATGACA-CTTTAT-C--TTCAGGCAA--AATGGT-CA-TTTTTCC-AT-GCAGAATAATG-ATCGGGGGAGGGG-----------------GGG-----G-------TC-A------TT---------------------GAG-A-T-CATT-TTC-C-CGGTCAT-TATTCT--ACGGGGGTC-AT-TATTCTT
gi|3 : -CATTACTGGT-ACAGGG-ATCA-T-A-G-A-G----ACAACG-TGGAA--GTGTCCAAGTTTAAGAAAATCAAG-CTTTTT-C--TTt
gi|31 : atcaagaaggctgtatgtttttcatagaagaaacaccggttgtcatttttgtcggcatcgatggtaagactgaagttcgcgcgcgagatcccttcattttctcattccattgaG-----------------GGG-----G-------TC-A------TTTTT-TCG--ACAC-A--T--ATAATA-T-AC---TCC-C-CGGTCAT-TATTCT--ACAGAGGTC-AT-TATTCTTCTTTAttttctgtttattagaagtaatacttcatttcgatttcttcctgtagggcaaaaaacgaaactttcgacgaaaatgtcgagattttatcttgataaatggcatgatattgcatcaccaggaaaacgctattatacaatgtacacaagagcaggttttggaaaaagcagaactggatgattggtacacggtgatgaatctggtggacacctaataatcaccagaacgtttgaattagaaccctgaaacatgcactaattgggaataagattaccaaaaggacaatgtataaattatgactcgtac
gi|32 : ATTTATAAG-GG-GGT-CATTATTC-T-ACCGGG-GTAAAT-T-T-T-C----TTCACG-TGGAA-TGTGCTCATTTTCATGAA
gi|34 : GAAAATGACA-CTTTTT-C--TACAGACAA--AAGGTT-AA-TTTTTCT-AC-GTAGAATAATG-ACT--------G
gi|8 : GAATAAATAATGAAAC--AATGAAATTTATAAG-GG-GGT-CATTATTC-C-ACA-----------------------------------CGTGCTCATTTTTATGAAAATGAAA-TTTTTT-C--TTCAGGCAA--AAAGGC-AA-CCTTTCT-AC-GTAGAAAAATT-ACC---------------------------CTG-----G-------TC-A------TTATT-
gi|8 : ttcaatgtgttttcacagaaaataactcgggttgagagaactatatcagtgtaaagaaataaaaagtaaaaaaaaaaaaaagcccatcttcttaatcatttttttttttactataagttgatttcaatagaaatgatcaagtaactttctgtttactgtaattaaaatgacaatTTTC-T----ACGT-A--G--AAAA-A-T-TA---CCC-T--GGTCAT-TATTCT--TCGGGGGCC-AT-cttcgggggccatt
gi|9 : ttcaatgtgttttcacagaaaataactcgggttgagagaactatatcagtgtaaagaaataaaaagtaaaaaaaaaaaaaagcccatcttcttaatcatttttttttttactataagttgatttcaatagaaatgatcaagtaactttctgtttactgtaattaaaatgacaatgaataaataatgaaacaatgaaatttataagggggtcattattccacacgtgctcatttttatgaaaatgaaattttttcttcaggcaaaaaggcaaccTTAAAATGGCAATATTGTACAAT------------------ACCAGAATAAACACTGA--C--AATGGAATTTAAAAGTGGCGGTTCATTATTC-T-ACAGGG--TCT-T-T-T-T-CTTTCTTCACG-TAGAA-TGGGCTCATTTTTATGAAAATGACA-CTTTTT-C--TTCAGGCAC--AAAGGTACATTTTTTCT----GTAAGAT--TG-AGC--------GGGGGGGGGGGGGGGGGGGGGG-----G-------GC-A------TTTTTCT----GTGT-A--GC-AAAA-ACT-GA---CCC-C---GTCAT-TATTCT---CGGGGGTC-AT-TGTTCTTCTTT
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GGTACAGGGCATCATAGAGACAACGTGGACGTGTCCAAATTAAGAAAATCAAGCTTTTTTTTATAAGAGGAAATATTTTATTTCGATTTCTTCCTGTAGGGCAAAAAACGAAACTTTCGACGAAAATGTCGAGATTTTATCTTGATAAATGACATGATATTACATCATCAGGAAAACGCTATTATACAAGGTACACAAGAGCAGGTTTTGGAAAAAGCAGAACTGGGTGATTGGTACACGGTGATGAATCTGGTGGACACCTAATAATAACCAAAAACCCTGAAAAATGCACTAATTGAGAATAAGATTATTCAAAAATGATATATAATCCATTACTATCATGTATGACTCGTATAGACACCAGTACAGCTGTAGTAGAGAAAAAAAAATTAAAGATCGATGTAAGTTCATTTTATGACCAATAGACAGAATTTTCTTAAATAGACGAAATAACTTAATGTGTTTTAATGAGATACATGTAATTCGTTGTGATGAGATAATTATATAT
Unaligned ( gi|4 ): AGAGCTGGATGGTTATCTGAATCTGGGCCGCACCTAACAATCGCCAAAACGTATGAATTGGATCACCTGTTCAGCCGAGACATGTACTAATTGAAAATAAGATTATCAAAGAATAATACATCCATTACAGCTAATTATAACTCATAGACACCCCCTTCCGTAGAAAAAAAAAACACACCACAAGATCCCCAGTGGCAAGAATTTCTCAAATATAGTTTAGTTATGAACATTGTGGGATGTACTTGCCTGCCCAGTAGTAGAGAAAAAAATCAAAGATAAATGCAAGTTCATTTTAGGACTAATAAACAGAATCAAATAGAGGCTTGCATCTCGAGATAACTTCAATGCGTTTTCACTAGTAATAACGAGATCACTCGTTGTGATGAGATAGCTAGCTATATCGGTGTAAATAAATGAAAAGT
Unaligned ( gi|5 ): CATTGAAACTATAGGCACAGGACATCATTAGACAACATGGACGTGTCCGAGTTTAAAAAAAATAATACTTTTTATTAATAAGAAAAAAATTCTTCATGTAAGTAGAAGAAAGGAAACTTTTGACAAAAATGTAAAGACTTTATCTTGTTAAATTGCATATTACAGCCACAGAAAAACACTCAAACACCACTGCAGGTTTTGAAAAGTACATATCTGGATGATTGTCTTAAACGGGTACACAGTGGGCACCTAGGAATCACCAAACGTTTGAATTAAAACCCTGGTTCAGTTGAAACATACACGTACTATGTCTGCTAAATTTCCAGTAACTGAGAATGAAATTATTACAGAATAATATGTTCATTTGTGCTTTATGATTCATAGATCCGCCACCGTAGAGAAAAACCAAAA
Unaligned ( gi|6 ): GCAGAACTGGATGATTGGTACACGGTGATGAATCTGGTGGACACCTAATAATCACCAGAACGTTTGAATTAGAACCCTGAAACATGCACTAATTGGGAATAAGATTACCAAAAGGACAATGTATAAATTATGACTCGTACAGCCCCCCCCCCCTCCCCATTTCTGTAGAAAAAAAAAACACCACACCACACAGTGACAAGAATTTCACAAATATAGTTTAGTTATGAAATCTTTCAGTATAGCTGTAGTAGAGAAAAAAAAACATTTAAAGATCAACACTTCAATGTGTTTTCACAGAAAATAACTCGGGTTGAGAGAACTATATCAGTGTAAAGAAATAAAAAGTA
Unaligned ( gi|7 ): TTTCTTCTGTCCATTCGTTACTCAAAATTAAAAGTTCTTTTTTGCTCATCTTAAGAAATAAAAAAAAATCACCTTGGAAGAATGTTTAATGATTTTTATCTTTTGATTTAAATGGCATATTGCATCACCAGGAAAACGCTAAATTACAATCTACACATGTCCGGGTTTTGAAAAGTACAGAGCTGGATGATTATCTTAAACGGGTACACAGTGATGAATCTGATGGGCACCCAAGAATCACCAAAACGTTTGAACTGGAATCCTTGTTCAGCCGAAACGTGCACTAATTGAGAATAAGATTATTAAAGAATATATCCATTAGCGCTAATTATGACTCATAG
Unaligned ( gi|14 ): CTTTAAGAAAGTAAAACTTTTTTTGGAAAAGAAAAGTATTTCACATCGATTTCTTCCTGAAGGCAGAAAAACGAAAACTTTCTATGATTTTATCTTAATAAATGGCATTTTGCATCACCAGGAAAACGCCATTACAATGTACACAAGTGCAGGTTTTGAAAAAATATAGAGCTGGATGATTATCTTAAACGTGTACA
Unaligned ( gi|15 ): CTTTAAGAAAGTAAAACTTTTTTTGGAAAAGAAAAGTATTTCACATCGATTTCTTCCTGAAGGCAGAAAAACGAAACTTTCTATGATTTTATCTTAATAAATGGCATTTTGCATCACCAGGAAAACGCCATTACAATGTACACAAGTGCAGGTTTTGAAAAATATAGAGCTGGATGATTATCTTAAACGTGTACA
Unaligned ( gi|17 ): ATCAAAGTTGGCTGTATTTTTCAAAATAAAACACCCGTTGTCATTTTTGTCGGCATCGATGTTAAGACTGAATTTTCTCATTGCATTGACATTAGTACAGGGCATCATAGAGACAACATTTAAGTGTCCAACTTTAAGAAAATAATTTTTTTGTTGGGGGGGATCAGAAAAAAAT
Unaligned ( gi|19 ): GCAAAATGCACTAAGTGAAATAAATAAATAAAGAATAAAATACATTATAGCAATTGATTTCTCATGACAACCCCCCTCCGTAGGAAAAAAACCTTAGAAGAACATAATGACACGAATTTCACAAATTCAGTTAGTTAGACACTCTTTTGCAGTACTTGCTTGCATAGTATGT
Unaligned ( gi|23 ): GATTTTATCTTGATTAATGGCATTATGCATAACAAGGCTACTGCAGGTTTTGAATAGTGCAGAGCTGGATGACTATGATCTTAAACGGGTACCAGTACACAGGGATGAATCTGGTGGGCACCTAAGAATCGCAAAAAACGTGTGAATTGTAACCTTTGTT
Unaligned ( gi|26 ): ATAACTCGTGATGAGACAATTATATTAATATCGGCGTAATAAAGAAAAAAAGTCATCTTAATAATTTGTTCACTTGAAATTGATTTTAATAGAAATGATTAAGTTACTTTCGGTTTACTGCAATTAAA
Unaligned ( gi|27 ): AATGCATGTTTTCACTCGTAACATGTAAACCGAGAATACTCGTTGTGATGAGATAACTTTATCGGTTGTTATAAATAAAAAGTGGGGGGAAAATTTTTTTAATCATATTCT
Unaligned ( gi|28 ): AGTCCAGTAGTAGAGAAACAAACATTAAAGATCAATGCATGTTGATTGTATGACTAATAAACAAACTTTTGTTGAATAGAGACTTGTATCTCAAAAAAACGTCAATA
Unaligned ( gi|29 ): ACACCTATTAGTGCCAACTATAACTCATAGACTCTCCCCTTTCCGTAGAAAAAAAAACACCACAAGAACCCCTAACCACAGTGGCAAGAATTTCACAAATA
Unaligned ( gi|30 ): AGTGGTAGAGAAAAAGAATGAAAGATGAAACTAAGTTCATTTTATGACTGATAGACGGAATGGCTTTAAATAGAGGCATGTACATGGAAATA
Unaligned ( gi|33 ): CCCCCTTCCATAGAAAAAACACCATAAGAACCCCTAACACAGTGGCAAGGATTTTACACAAATATA
Unaligned ( gi|35 ): TATCTTTAAAGTATTTTAACTCGTAATGACGAAATAACTCGTTATCAT
Unaligned ( gi|36 ): GTTTTCATTACAAATGCTTTATGTTCATAAAATAGAAGGGAG
Unaligned ( gi|37 ): TGGTAATTTTAATTAAATCACTCATTCGTGATGAGAC