lowQualScore : 1111111111111111111
lowQualScore : 222 222222 55555555555555555555555555555555555555 11111111111111111 6666 1 1111 11 11 1 11 22222 11111 44444444444444444 1111 7777777777777777777 11 1
lowQualScore : 2 2 000 2 555 33 66 222222 2 2 2 5555 2 33 2 2 2 2 9 33 555 00000000000000000000000000000000000000 3 3 3 3 9999 3 3 9 3 3 99999999999999999 3 1 0 3 3 9999 5 3 3 3 2222 44 3 8888 00 777 88 5 777 666 4 9 00 4 9999 00000 44444 9999 5 99999999999999999 4444 4444444444444444444 99 6 7 00 5
lowQualScore : . . ... . ... .. .. ...... . . . .... . .. . . . . . .. ... ...................................... . . . . .... . . . . . ................. . . . . . .... . . . . .... .. . .... .. ... .. . ... ... . . .. . .... ..... ..... .... . ................. .... ................... .. . . .. .
lowQualScore : 9 9 000 9 000 99 88 000000 7 7 7 7777 7 77 9 9 9 9 4 99 444 55555555555555555555555555555555555555 1 1 1 1 6666 1 1 2 3 3 33333333333333333 3 2 2 3 3 4444 5 6 2 6 7777 22 6 5555 11 000 11 4 000 444 0 6 66 4 7777 00000 00000 4444 0 88888888888888888 2222 6666666666666666666 22 7 3 00 0
consensus : GGGTGGAA-AT-T-T-AGGT-AAA---TGTC--T--AA-----GGAGCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGC-CCA-GATT-GAAAA-TCATGGGC--C---CG------------CCCC----GTA-ATTTAAGTTTGTG-ACAAT-T-TTGC-TA-TTTCTTC----TTTC-AT-TATTTGT-A-TCA-TTCAA-------TT--TCT-GTTTCAATT-TCCA-CTTCAAGCACT----CTTTCATAT-ANCCC-TTCTTCC----T-CCAATA-AATCGCTAT----C-CGAT---TC-ATCC---TCA--CTC-TCTCTC--C-G---TTTCAAAATCACC-----AT-----TG----CA-ATCG------------T-AT-TTT----TTTTTTG-------TGTTA------ATCTTTTTT--A-TTGGTTTTTAACTTCTTGTAGCCA
Reference ( gi|2 ) : GGGTGGAA-AT-T-A-AGGT-AAA---TGTC--T--AA-----TGAGCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGC-CCA-GATT-GAAAA-TCATGAGC--C---CG------------CCTC----GTA-ATTTAAGTTTGTT-ACAAT-T-TTGC-TA-TTTCTTC----TTTC-AT-TATTTAT-A-TCA-TCCAA-------TT--TCT-GTTTCAATT-TCCA-CTTCAAGCACTCTAGCTCTCATAT-AGCCC-TTCTTCC----T-CCAATA-AATCACTAT----C-CGAT---TC-TTTC---TCA--CTC-TCTGTC--C-G---TTTCAAAATCACC-----AT-----TG----CA-ATCG------------T-ATATTT----TTTTTTGAGGGGGGTGTTAAAACATATCTTTTTT--A-TTGGTTTTTGCCTTCTTGTCGCCA
gi|7 : GGGTGGAA-AT-T-T-AGGT-AAA---TGTC--T--AA-----GGAGCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGC-CCG-GATT-GAAAA-TCATGGGC--C---CG------------CTCT----GTA-ATTCAAATGTGTG-ACAAT-T-TTGC-TA-TTTCTTC----TTTC-AT-TATTTGT-A-TCA-TTCAA-------TT--TCT-GTTT-ACTT-ACTG-CTTCTAGCA------CTCTCATAT-GACC----CTTCC----G-CCAATA-AATCGCTAT----C-CGAT---TC-ATGC---TC-----------TC--C-G---TTTCCAAATCACC-----AT-----TG----CA-ATAG------------T-AC-TTT----TTTTTTG--------GCTAA-------TTTTTTTAAA-TTGGTTTTTGCCTTCTCGTAGCCA
gi|5 : GGCTGGAA-AT-T-T-AGGT-AAA---TGTCCAT--AAGAATTTAAGCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGT-CCA-GATT-GAAAA-TCATGGGC--C---CG------------CCT-------------------G---ACAAT-T-TTGC-TA-TTTCTTC----TTTC-AT-TATTTGT-A-TCA-T----------------------TCAATT-TCCA-CCTCAAGCACTCT----TTCATAT-ACCCC-TTCTTCC----T-CCAATA-AATCACT------C-TGAT---CC-ATCC---TCA--CTC-TCTCTC--C-T---TTTAAAAATGACC-----ATATGATTG----CA-ATTG------------T-G-ATTT----TTTTTTTTTTTGGTTGT----ATA-ATCTTTTTT--A-TTGGTTTTTAACTTCTTGTAGCC
gi|8 : gGGGTGGAA-AT-T-T-AGGT-AAA---TGTC--T--AA-----GGAGCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTGGG--AGC-CCA-GATT-GAAAA-TCATGGGC--C---CG------------CC-C----G-----------------ACAAT-T-TTGC-TA-TTTTTTC----TTTC-AT-CATTTGT-A-TCA-----------------------TTCAATT-TCCA-CTTCAAGCACT----CTTTCATAT-ACCCC-TTCTTCC----T-TCAATA-AATCACTATCTAGC-TGAT---AT-ATCC---TCA--CTC-TCTCTT--C-G---TTTCAAAATCATCATATGAT-----TG----CA-ATCG------------TGATTTTTTTTATTTTTTG--------GTTA------ATTTTTTTT--A-TTGG-TTTTAACTTCTTG
gi|3 : gGGGTGGAA-ATAT-T-AGGT-AAA---TGTT--TTAAG-----GGAGCCAAACGGGC-T-CTTTAG----CAT-CAAAATTTTTAG--AGC-CCATGATT-GAAAATTCATGGGC--C---CG------------CC-------CA-AC-------------CAAT-T-TTGC-TA-TTTCTTC----TTTC-AT-TATTTGT-ATTCA-TTAAA-------TTTCTCT-GTTTTCATT-TCCA-CTTCAAGCACT----CTTTCATATAAACAC---CTTCC----T--CAATA-AATCACTAT----CTTGAT---TC-ATCC---TCT--CTCTTCTTTCTTC-G----TTCAAAATCACC-----ATA----TGATTTCA-ATCG------------TGAT-TTT----TTTTTTGTTG-----GTTA------ATCTTTTTT--ATTTGG--TTTAACTTCTTGTAGCCaag
gi|1 : gGGGTGGAA--T-T-ATAGGTTAAA---TGTC--TT-AA-----GGAGCCAAATGGGC-TTCCT-AG----CATTCAAAATTTTAGGGGAGC-CCA-GATT-GAAAA-TCATG-GCCAC---CG------------CCCC----CGATATCTAGCTTTGTCGACAATAT-TTGC-TA-TTTC-TC----TTTC-AT-TA-TTGT-A-TCA-TTC-A-------TT--TCTAATTTCATTTCTCCAGCTTCAAGCACTCT--CT-TCATAT-GACCC-TTTTTCCCT--C-CCAATATAATCTCTAT----C-CGAT---TCATTCC---TCACTCTC-TCTTTC--C-GGATTTTCAAAAT--TC-----AT-----T-----CA-ACC
gi|13 : GGGTGGAA-AT-T-T-ATGT-AAA---AGTC--T--AA-----GGAGCCAAACGGGC-T-CCT-AGCTAGCAT-CAAAATTTTAGG--AGC-CCA-GATT-GAAAA-TCACGGGC--C---CA------------CCCC----GTT-AAATAAGTTTGTG-ACAAT-T-TTGC-TA-TTTCTTC----TTTC-AT-TATTTGT-A-TCA-TTCAA-------TT--TCT-GT---AATT-TCCA-CTtttcactagcaaatgggcatgatacctttcattagtattttggttccttttgtttttaatttacttt
gi|9 : gGGGTAGAA-AT-T-T-AGGT-AAA---TGAC--T--AA-----GGAGCCAAACAGGT-T-CTT-AA----CAT-TAAAATTCTTGA--AGC-CTA-GATT-GAAAA-TCATGGGC--C---CA---------------------TG-ATTTAAGTTTGTG-ATAAT-T-TCAA-TA-TTT--TA----TTTC-AT-T-TTTATTA-TCA-TTCAA-------TT--TCT-GTTGCAATT-TCCA-CTTCAAGCAC---------------AACCT-TTCTTCC----T-GCAATA-AATTTCTAT----C-TGATTTATC-TTTCCTTTCA--TTC-TCTATCA-C-A---TTTC--TATCATT-----AT-----TG----
gi|14 : gGGGTGGAA-AT-T-T-AGGT-AAA---TGTC--T--AA-----GGAGCCAAACAGGC-T-CCT-AG----CAT-CAAAATTTTAGG--ACC-CCA-GATT-GAAAA-TCATGAGC--C---CG------------CCAC----ACA-ATTTAAGTTTGTG-ACAAT-T-TTGC-TA-TTTCTTC----TTTC-AT-TATTgtttttgccttcttgtagg
gi|12 : GGGTGGAA-AT-T-T-AGGT-AAA---TGTC--T--AA-----GGGGCCAAATGGGC-T-CAT-GA----CAT-TAAAATTCTAGG---GC-CCA-GATT-GAAAA-TCATGCAT--T---GG------------CCT-----GTA-ATTTAAGTCTGTA-ACAAT-T-TAA---A-TTTTTTTTAAATTTC-AT-TATTATT-A-TTA-TTCAATTTCTGTTT--TCT-GTTTTAATT-TCCA-CTTCAAGCACT----CTTTCATAC-ACCCC-CTCTTCCTCTGT-CCGATA-AATCAC
gi|6 : GGTTGGAA-AT-T-T-AGGT-ATG---CATC--T--AA-----GGAGCCAAGCGGGC-T-CCT-AG----CAT-TAAAATTTTAGG--AGC-CCG-GAGT-AAAAA-TTATGGGC--C---CGTAATTTAAATAACATCAATTGTA-A--TAAGTTTGTC-ACAAT-T-T--C-TA-ATCTTTA----TTTC-TT-CATTTCT-A-T---TCCA-----------------TTTCGATT-TCCA-TT------ATT----CTCTCAAAC-ACACC-TTCTTCC----T-CTGATA-ATTCACTCT----C-AGAT---TC-ATCC---TCC--CTC-TC
gi|4 : gGGGTGGAATCT-T-ATGGGT-AAAAAGTGTC--T--AAAG---CGAGCCAA--GGGC-A-ACT-AG----CAT-CAACAATTGAGG--AGC-CCA-GATT-GAAAA-TCATG----------G------------CC-C----G-----------------ACCAT-----GCGTAGTTTCTTC---------ATGTATTT-T-A-TCAATTCAAG------TTA-TCT-GATTTAAAT-TTCA-CTACAAGCACTC-A--TTTCAT-T-ACCCCATTCTTCC----TTCCAATA-A-TCACTAT----C-TGAT---TC-ATCA---TCA--TCC-TCT-CC--C-G----TTCAAAATCACCACATAAT-----TG----CAGATCGGTGATTTTTTCTT-GTTTTT----TTTTTT-------TTGTT------TATCTTTTTT--A-TGGGTTTTTAACT--TTGTAGCattctctatcacaactctatcattctcattttcaacccttttttcattctcattctcttcactactttcattc
gi|15 : agGGGTGGAA-AT-TTA-A--T-AAA---TATC--C--AA-----GGAGCCAGATGGTA-T-CTA-AG----CAT-TAAAATTTTAGG--GGC-TCA-GATT-AAAAA-TCATGAAC--
gi|16 : GGTGTAA-AT-G-T-AGGT-AAT---TGTC--T--AA-----GGAGCCAAACGG-C-T-CCT-AG----CAT-CAAAATTTTAGG--AG
gi|10 : A-AT-T-T-AGGT-AAC---TGTC--T--AA-----TGAGCCAAACGAGC-T-CCT-AG----CAT-CAAAATTTTAGG--GTC-CCA-GATT-GAAAA-TCAAGGGC--C---CG------------CCCT----GTA-ATTTAAGTTTGTG-ACATT-T-TTGC-TA-TTTCTTC----TTTC-TT-TATTTGT-A-TCA-TTCAA-------TT--TCT-GTTTCAATT-TCCA-CTTCAAGCACT----CTTTCATAT-A-CCC-TTCTTCC----T-CCAATA-AATCACTAT----C-TGAT---TC-ACCC---TCA--CTC-TCTCTC--C-G---TTTCAAAATCACC-----AT-----TG----CA-ATCG------------
gi|11 : AGCCAAACGTGCCT-CCT-AG----CAA-AAAAAATTTAGG--AGCGCCG-GATTCGAAAA-TAATGGGC--CTCCCG------------TCCC----GTA-ATTCAAGTTTGTG-ACAAT-TGTTGC-TA-TTTCTTCG---TTTCAAT-TATCTGT-A-TCA-ATCAA-------TT--TCT-G-TTCAATC-GTCA-CTTCAAGCGAT-----TCTCATAT-GACCC-TTCT--C----T-GCCAT--AATTGCTAT----CTCGAT---TA--TCC---TAA--CTA-TCT-TC--CGG---TTTCAAAATCACC-----AT-----T
gi|5 : AAAATCACA-----AT-----TG----CA-ATCA------------T-ATGGTC----ATTTTTAAAAGGAG
gi|17 : gggctggaaatttaggtaaatgtccataagaatttaagccaaacgggctcctagcatcaaaattttaggagtccagattgaaaatcatgggcccgcctgacaattttgctatttcttctttcattatttgtatcattcaatttccacctcaagcactctttcatataccccttcttcctccaataaatcactctgatccatcctcactctctATCTTTTTT--A-TTGGTTTTTACCTTCTTGTAGCCAttttttttttggttgtataatcttttttattggtttttaacttcttgtagcc
Alignments
lowQualScore : 111111111 11111111111 1111 111111 33333 55555555555555 11111 3333333333333 111111
lowQualScore : 2 33 2 444 33 66 33 66666 2 2 2 5555 2 33 2 2 2 2 77777 66666 2 1 111111111 2 2 2 555 2 2 33 8888 2 2 33 3 66 0 33333333333 3 0 3 3 3 7777 777 3 4 3 5555 3 4 7777 88 3 000000 666 55 55 3 666 00000 4 9999 5 5 22222222222222 5 44444 9999999999999 5 666666 77 5 5 1
lowQualScore : . .. . ... .. .. .. ..... . . . .... . .. . . . . ..... ..... . . ......... . . . ... . . .. .... . . .. . .. . ........... . . . . . .... ... . . . .... . . .... .. . ...... ... .. .. . ... ..... . .... . . .............. . ..... ............. . ...... .. . . .
lowQualScore : 7 77 7 777 77 33 44 22222 5 5 5 3333 5 44 7 7 7 7 22222 11111 6 2 000000000 9 9 9 000 9 9 99 9999 9 9 22 1 77 5 55555555555 1 5 1 1 3 1111 888 3 2 3 0000 3 8 7777 33 6 555555 444 00 00 6 444 00000 0 4444 0 0 99999999999999 7 33333 9999999999999 7 444444 99 7 0 3
consensus : GGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGC-CCA-GATT-GAAAA-TCATGGGC-C---CGCCCCGTA-ATTTAAGT--------TTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GTTTCAATT-TCCA-CTTCAAGC-ACT----C-T-TTCATAT-ANCCC-TTCTTCC----TCCAATA-AATCACTAT----C-CGATTCA-TC------CTCAC---TCTC--TC--TC-CG---TTTCAAAATCACC-----AT-TG----CA-ATC-GT-A------------T-TTT-----TTTTTT-------G--T--GT-TA------ATCTTTTTT--A-TTGGTTTTTAACTTCTTGTAGCCA
Reference ( family-3138 ) : GGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGC-CCA-GATT-GAAAA-TCATGGGC-C---CGCCCCGTA-ATTTAAGT--------TTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GTTTCAATT-TCCA-CTTCAAGC-ACT----C-T-TTCATAT-ANCCC-TTCTTCC----TCCAATA-AATCGCTAT----C-CGATTCA-TC------CTCAC---TCTC--TC--TC-CG---TTTCAAAATCACC-----AT-TG----CA-ATC-GT-A------------T-TTT-----TTTTTT-------G--T--GT-TA------ATCTTTTTT--A-TTGGTTTTTAACTTCTTGTAGCCA
gi|1 : GGGTGGAATT-ATA--GGTTAAA---TGTC--TT-AAGG--A-----GCCAAATGGGC-TTCCT-AG----CATTCAAAATTTTAGGGGAGC-CCA-GATT-GAAAA-TCATGGCCAC---CGCCCCCGATATCTAGCT--------TTGTCGACAATAT-TTG---C-TA-TTTC---TC----TTTC-AT-TA-TTG-TA-TCA-TTC-A-------TT--TCTAATTTCATTTCTCCAGCTTCAAGC-ACT----C-TCTTCATAT-GACCC-TTTTTCCCT--CCCAATATAATCTCTAT----C-CGATTCATTC------CTCAC---TCTC--TCTTTC-CGGATTTTCAAAAT--TC-----AT-T-----CA-ACC-
gi|10 : AAT-TTA--GGT-AAC---TGTC--T--AATG--A-----GCCAAACGAGC-T-CCT-AG----CAT-CAAAATTTTAGG--GTC-CCA-GATT-GAAAA-TCAAGGGC-C---CGCCCTGTA-ATTTAAGT--------TTGT-GACATT-T-TTG---C-TA-TTTCT--TC----TTTC-TT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GTTTCAATT-TCCA-CTTCAAGC-ACT----C-T-TTCATAT-A-CCC-TTCTTCC----TCCAATA-AATCACTAT----C-TGATTCA-CC------CTCAC---TCTC--TC--TC-CG---TTTCAAAATCACC-----AT-TG----CA-ATC-Gtttcactagcaaatgggcatgatacctttcattagtattttggttccttttgtttttaatttacttt
gi|11 : --A-----GCCAAACGTGCCT-CCT-AG----CAA-AAAAAATTTAGG--AGCGCCG-GATTCGAAAA-TAATGGGC-CTCCCGTCCCGTA-ATTCAAGT--------TTGT-GACAAT-TGTTG---C-TA-TTTCT--TCG---TTTCAAT-TATCTG-TA-TCA-ATCAA-------TT--TCT-G-TTCAATC-GTCA-CTTCAAGCGATT----C----TCATAT-GACCC-TTCT--C----TGCCAT--AATTGCTAT----CTCGATT-A-TC------CTAAC---TATC--TT--CC-GG---TTTCAAAATCACC-----AT-T
gi|12 : GGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--G-----GCCAAATGGGC-T-CAT-GA----CAT-TAAAATTCTAGG---GC-CCA-GATT-GAAAA-TCAT--GCAT---TGGCCTGTA-ATTTAAGT--------CTGT-AACAAT-T-TAA------A-TTTTT--TTTAAATTTC-AT-TATTAT-TA-TTA-TTCAATTTCTGTTT--TCT-GTTTTAATT-TCCA-CTTCAAGC-ACT----C-T-TTCATAC-ACCCC-CTCTTCCTCTGTCCGATA-AATCAC
gi|13 : GGGTGGAAAT-TTA--TGT-AAA---AGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AGCTAGCAT-CAAAATTTTAGG--AGC-CCA-GATT-GAAAA-TCACGGGC-C---CACCCCGTT-AAATAAGT--------TTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GT---AATT-TCCA-CT
gi|14 : gGGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACAGGC-T-CCT-AG----CAT-CAAAATTTTAGG--ACC-CCA-GATT-GAAAA-TCATGAGC-C---CGCCACACA-ATTTAAGT--------TTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATT
gi|15 : GGGTGGAAAT-TTA--A-T-AAA---TATC--C--AAGG--A-----GCCAGATGGTA-T-CTA-AG----CAT-TAAAATTTTAGG--GGC-TCA-GATT-AAAAA-TCATG
gi|16 : GGTGTAAAT-GTA--GGT-AAT---TGTC--T--AAGG--A-----GCCAAAC-GGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGaac
gi|17 : ------------T-TTA-----TTTTTT-------G-----GT-TA------ATCTTTTTT--A-TTGGTTTTTACCTTCTTGTAGCCA
gi|2 : ttcGGGTGGAAAT-TAA--GGT-AAA---TGTC--T--AATG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGC-CCA-GATT-GAAAA-TCATGAGC-C---CGCCTCGTA-ATTTAAGT--------TTGT-TACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTA-TA-TCA-TCCAA-------TT--TCT-GTTTCAATT-TCCA-CTTCAAGC-ACTCTAGC-T-CTCATAT-AGCCC-TTCTTCC----TCCAATA-AATCACTAT----C-CGATTCT-TT------CTCAC---TCTC--TG--TC-CG---TTTCAAAATCACC-----AT-TG----CA-ATC-GT-A------------TATTT-----TTTTTTGAGGGGGG--T--GT-TAAAACATATCTTTTTT--A-TTGGTTTTTGCCTTCTTGTCGCCAc
gi|3 : GGGTGGAAATATTA--GGT-AAA---TGTT--TTAAGGG--A-----GCCAAACGGGC-T-CTTTAG----CAT-CAAAATTTTTAG--AGC-CCATGATT-GAAAATTCATGGGC-C---CGCCC---A-AC---------------------CAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TATTCA-TTAAA-------TTTCTCT-GTTTTCATT-TCCA-CTTCAAGC-ACT----C-T-TTCATATAAACAC---CTTCC----T-CAATA-AATCACTAT----CTTGATTCA-TC------CTCTCTCTTCTT--TC--TT-CG----TTCAAAATCACC-----ATATGATTTCA-ATC-GTGA------------T-TTT-----TTTTTT-------G--TTGGT-TA------ATCTTTTTT--ATTTGG--TTTAACTTCTTGTAGCC
gi|4 : gGGGTGGAATC-TTATGGGT-AAAAAGTGTC--T--AAAGCGA-----GCCAA--GGGC-A-ACT-AG----CAT-CAACAATTGAGG--AGC-CCA-GATT-GAAAA-TCATGG----------CCCG-------------------------ACCAT-----G---CGTAGTTTCT--TC---------ATGTATTT--TA-TCAATTCAAG------TTA-TCT-GATTTAAAT-TTCA-CTACAAGC-ACT----CAT-TTCAT-T-ACCCCATTCTTCCT---TCCAAT--AATCACTAT----C-TGATTCA-TC------ATCAT---CCTC--TC---C-CG----TTCAAAATCACCACATAAT-TG----CAGATCGGT-GATTTTTTCTTGTT-TTT-----TTTTTT-------T--T--GT-TT------ATCTTTTTT--A-TGGGTTTTTAACT--TTGTAGC
gi|5 : agGGCTGGAAAT-TTA--GGT-AAA---TGTCCAT--AAGA--ATTTAAGCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGT-CCA-GATT-GAAAA-TCATGGGC-C---CGCC-------------------------T-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-----------------------TTCAATT-TCCA-CCTCAAGC-ACT----C-T-TTCATAT-ACCCC-TTCTTCC----TCCAATA-AATCAC--T----C-TGATCCA-TC------CTCAC---TCTC--TC--TC-CT---TTTAAAAATGACCATATGAT-TG----CA-ATT-GT-GATTTT-------T-TTT-----TTTTTT-------GGTT--GTATA------ATCTTTTTT--A-TTGGTTTTTAACTTCTTGTAGCC
gi|6 : gGGTTGGAAAT-TTA--GGT-ATG---CATC--T--AAGG--A-----GCCAAGCGGGC-T-CCT-AG----CAT-TAAAATTTTAGG--AGC-CCG-GAGT-AAAAA-TTATGGG---------CCCGTA-ATTTAAATAACATCAATTGT-AATAAG-T-TTGTCAC-AA-TTTCTAATC----T-----T-TATTTC-T--TCATTTCTA--------T--TCC-ATTTCGATT-TCCA-TT-------ATT----C-T-CTCAAAC-ACACC-TTCTTCC----TCTGATA-ATTCACTCT----C-AGATTCA-TC------CTCCC---TCTCATTC--TC-TA---TCACAA
gi|7 : gGGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGC-CCG-GATT-GAAAA-TCATGGGC-C---CGCTCTGTA-ATTCAAAT--------GTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GTTT-ACTT-ACTG-CTTCTAGC-ACT----C----TCATAT-GACC----CTTCC----GCCAATA-AATCGCTAT----C-CGATTCA-T-----------------GC--TC--TC-CG---TTTCCAAATCACC-----AT-TG----CA-ATA-GT-A------------C-TTT-----TTTTTT-------G-----GC-TA------AT-TTTTTTAAA-TTGGTTTTTGCCTTCTCGTAGCCActctatcattctcattttcaacccttttttcattctcattctcttcactactttcattc
gi|8 : GGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTGGG--AGC-CCA-GATT-GAAAA-TCATGGGC-C---CGCCC--------------------------GACAAT-T-TTG---C-TA-TTTTT--TC----TTTC-AT-CATTTG-TA-TCA-----------------------TTCAATT-TCCA-CTTCAAGC-ACT----C-T-TTCATAT-ACCCC-TTCTTCC----TTCAATA-AATCACTATCTAGC-TGATATA-TC------CTCAC---TCTC--TC--TT-CG---TTTCAAAATCATCATATGAT-TG----CA-ATC-GTGA------------T-TTTTTTTATTTTTT-------G-----GT-TA------ATTTTTTTT--A-TTGG-TTTTAACTTCTTGAAG
gi|9 : gGGGTAGAAAT-TTA--GGT-AAA---TGAC--T--AAGG--A-----GCCAAACAGGT-T-CTT-AA----CAT-TAAAATTCTTGA--AGC-CTA-GATT-GAAAA-TCATGGG---------CCCATG-ATTTAAGT--------TTGT-GATAAT-T-TCA---A-TA-TT--T--TA----TTTC-AT-T-TTTATTA-TCA-TTCAA-------TT--TCT-GTTGCAATT-TCCA-CTTCAAGC-AC-----------------AACCT-TTCTTCC----TGCAATA-AATTTCTAT----C-TGATTTA-TCTTTCCTTTCAT---TCTC--TA--TCACA---TTTC--TATCATT-----AT-TG----
Alignments
lowQualScore : 111111111 11111111111 1111 111111 33333 55555555555555 11111 3333333333333 111111
lowQualScore : 2 33 2 444 33 66 33 66666 2 2 2 5555 2 33 2 2 2 2 77777 66666 2 1 111111111 2 2 2 555 2 2 33 8888 2 2 33 3 66 0 33333333333 3 0 3 3 3 7777 777 3 4 3 1111 3 3 7777 88 3 000000 666 55 55 3 666 00000 4 9999 5 5 22222222222222 5 44444 9999999999999 5 666666 77 5 5 1
lowQualScore : . .. . ... .. .. .. ..... . . . .... . .. . . . . ..... ..... . . ......... . . . ... . . .. .... . . .. . .. . ........... . . . . . .... ... . . . .... . . .... .. . ...... ... .. .. . ... ..... . .... . . .............. . ..... ............. . ...... .. . . .
lowQualScore : 7 77 7 777 77 33 44 22222 5 5 5 3333 5 44 7 7 7 7 22222 11111 6 2 000000000 9 9 9 000 9 9 99 9999 9 9 22 1 77 5 55555555555 1 5 1 1 3 1111 888 3 2 3 7777 3 3 7777 33 6 555555 444 00 00 6 444 00000 0 4444 0 0 99999999999999 7 33333 9999999999999 7 444444 99 7 0 3
consensus : GGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGC-CCA-GATT-GAAAA-TCATGGGC-C---CGCCCCGTA-ATTTAAGT--------TTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GTTTCAATT-TCCA-CTTCAAGC-ACT----C-T-TTCATAT-ANCCC-TTCTTCC----T-CCAATA-AATCACTAT----C-CGATTCA-TC------CTCAC---TCTC--TC--TC-CG---TTTCAAAATCACC-----AT-TG----CA-ATC-GT-A------------T-TTT-----TTTTTT-------G--T--GT-TA------ATCTTTTTT--A-TTGGTTTTTAACTTCTTGTAGCCA
Reference ( family-3138 ) : GGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGC-CCA-GATT-GAAAA-TCATGGGC-C---CGCCCCGTA-ATTTAAGT--------TTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GTTTCAATT-TCCA-CTTCAAGC-ACT----C-T-TTCATAT-ANCCC-TTCTTCC----T-CCAATA-AATCACTAT----C-CGATTCA-TC------CTCAC---TCTC--TC--TC-CG---TTTCAAAATCACC-----AT-TG----CA-ATC-GT-A------------T-TTT-----TTTTTT-------G--T--GT-TA------ATCTTTTTT--A-TTGGTTTTTAACTTCTTGTAGCCA
gi|1 : GGGTGGAATT-ATA--GGTTAAA---TGTC--TT-AAGG--A-----GCCAAATGGGC-TTCCT-AG----CATTCAAAATTTTAGGGGAGC-CCA-GATT-GAAAA-TCATGGCCAC---CGCCCCCGATATCTAGCT--------TTGTCGACAATAT-TTG---C-TA-TTTC---TC----TTTC-AT-TA-TTG-TA-TCA-TTC-A-------TT--TCTAATTTCATTTCTCCAGCTTCAAGC-ACT----C-TCTTCATAT-GACCC-TTTTTCCCT--C-CCAATATAATCTCTAT----C-CGATTCATTC------CTCAC---TCTC--TCTTTC-CGGATTTTCAAAAT--TC-----AT-T-----CA-ACC-
gi|10 : AAT-TTA--GGT-AAC---TGTC--T--AATG--A-----GCCAAACGAGC-T-CCT-AG----CAT-CAAAATTTTAGG--GTC-CCA-GATT-GAAAA-TCAAGGGC-C---CGCCCTGTA-ATTTAAGT--------TTGT-GACATT-T-TTG---C-TA-TTTCT--TC----TTTC-TT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GTTTCAATT-TCCA-CTTCAAGC-ACT----C-T-TTCATAT-A-CCC-TTCTTCC----T-CCAATA-AATCACTAT----C-TGATTCA-CC------CTCAC---TCTC--TC--TC-CG---TTTCAAAATCACC-----AT-TG----CA-ATC-Gtttcactagcaaatgggcatgatacctttcattagtattttggttccttttgtttttaatttacttt
gi|11 : --A-----GCCAAACGTGCCT-CCT-AG----CAA-AAAAAATTTAGG--AGCGCCG-GATTCGAAAA-TAATGGGC-CTCCCGTCCCGTA-ATTCAAGT--------TTGT-GACAAT-TGTTG---C-TA-TTTCT--TCG---TTTCAAT-TATCTG-TA-TCA-ATCAA-------TT--TCT-G-TTCAATC-GTCA-CTTCAAGCGATT----C----TCATAT-GACCC-TTCT--C----T-GCCAT--AATTGCTAT----CTCGATT-A-TC------CTAAC---TATC--TT--CC-GG---TTTCAAAATCACC-----AT-T
gi|12 : GGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--G-----GCCAAATGGGC-T-CAT-GA----CAT-TAAAATTCTAGG---GC-CCA-GATT-GAAAA-TCAT--GCAT---TGGCCTGTA-ATTTAAGT--------CTGT-AACAAT-T-TAA------A-TTTTT--TTTAAATTTC-AT-TATTAT-TA-TTA-TTCAATTTCTGTTT--TCT-GTTTTAATT-TCCA-CTTCAAGC-ACT----C-T-TTCATAC-ACCCC-CTCTTCCTCTGT-CCGATA-AATCAC
gi|13 : GGGTGGAAAT-TTA--TGT-AAA---AGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AGCTAGCAT-CAAAATTTTAGG--AGC-CCA-GATT-GAAAA-TCACGGGC-C---CACCCCGTT-AAATAAGT--------TTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GT---AATT-TCCA-CT
gi|14 : gGGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACAGGC-T-CCT-AG----CAT-CAAAATTTTAGG--ACC-CCA-GATT-GAAAA-TCATGAGC-C---CGCCACACA-ATTTAAGT--------TTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATT
gi|15 : GGGTGGAAAT-TTA--A-T-AAA---TATC--C--AAGG--A-----GCCAGATGGTA-T-CTA-AG----CAT-TAAAATTTTAGG--GGC-TCA-GATT-AAAAA-TCATG
gi|16 : GGTGTAAAT-GTA--GGT-AAT---TGTC--T--AAGG--A-----GCCAAAC-GGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGaac
gi|17 : ------------T-TTA-----TTTTTT-------G-----GT-TA------ATCTTTTTT--A-TTGGTTTTTACCTTCTTGTAGCCA
gi|2 : ttcGGGTGGAAAT-TAA--GGT-AAA---TGTC--T--AATG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGC-CCA-GATT-GAAAA-TCATGAGC-C---CGCCTCGTA-ATTTAAGT--------TTGT-TACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTA-TA-TCA-TCCAA-------TT--TCT-GTTTCAATT-TCCA-CTTCAAGC-ACTCTAGC-T-CTCATAT-AGCCC-TTCTTCC----T-CCAATA-AATCACTAT----C-CGATTCT-TT------CTCAC---TCTC--TG--TC-CG---TTTCAAAATCACC-----AT-TG----CA-ATC-GT-A------------TATTT-----TTTTTTGAGGGGGG--T--GT-TAAAACATATCTTTTTT--A-TTGGTTTTTGCCTTCTTGTCGCCAc
gi|3 : GGGTGGAAATATTA--GGT-AAA---TGTT--TTAAGGG--A-----GCCAAACGGGC-T-CTTTAG----CAT-CAAAATTTTTAG--AGC-CCATGATT-GAAAATTCATGGGC-C---CGCCC---A-AC---------------------CAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TATTCA-TTAAA-------TTTCTCT-GTTTTCATT-TCCA-CTTCAAGC-ACT----C-T-TTCATATAAACAC---CTTCC----T--CAATA-AATCACTAT----CTTGATTCA-TC------CTCTCTCTTCTT--TC--TT-CG----TTCAAAATCACC-----ATATGATTTCA-ATC-GTGA------------T-TTT-----TTTTTT-------G--TTGGT-TA------ATCTTTTTT--ATTTGG--TTTAACTTCTTGTAGCC
gi|4 : gGGGTGGAATC-TTATGGGT-AAAAAGTGTC--T--AAAGCGA-----GCCAA--GGGC-A-ACT-AG----CAT-CAACAATTGAGG--AGC-CCA-GATT-GAAAA-TCATGG----------CCCG-------------------------ACCAT-----G---CGTAGTTTCT--TC---------ATGTATTT--TA-TCAATTCAAG------TTA-TCT-GATTTAAAT-TTCA-CTACAAGC-ACT----CAT-TTCAT-T-ACCCCATTCTTCC----TTCCAATA-A-TCACTAT----C-TGATTCA-TC------ATCAT---CCTC--TC---C-CG----TTCAAAATCACCACATAAT-TG----CAGATCGGT-GATTTTTTCTTGTT-TTT-----TTTTTT-------T--T--GT-TT------ATCTTTTTT--A-TGGGTTTTTAACT--TTGTAGC
gi|5 : agGGCTGGAAAT-TTA--GGT-AAA---TGTCCAT--AAGA--ATTTAAGCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGT-CCA-GATT-GAAAA-TCATGGGC-C---CGCC-------------------------T-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-----------------------TTCAATT-TCCA-CCTCAAGC-ACT----C-T-TTCATAT-ACCCC-TTCTTCC----T-CCAATA-AATCAC--T----C-TGATCCA-TC------CTCAC---TCTC--TC--TC-CT---TTTAAAAATGACCATATGAT-TG----CA-ATT-GT-GATTTT-------T-TTT-----TTTTTT-------GGTT--GTATA------ATCTTTTTT--A-TTGGTTTTTAACTTCTTGTAGCC
gi|6 : gGGTTGGAAAT-TTA--GGT-ATG---CATC--T--AAGG--A-----GCCAAGCGGGC-T-CCT-AG----CAT-TAAAATTTTAGG--AGC-CCG-GAGT-AAAAA-TTATGGG---------CCCGTA-ATTTAAATAACATCAATTGT-AATAAG-T-TTGTCAC-AA-TTTCTAATC----T-----T-TATTTC-T--TCATTTCTA--------T--TCC-ATTTCGATT-TCCA-TT-------ATT----C-T-CTCAAAC-ACACC-TTCTTCC----T-CTGATA-ATTCACTCT----C-AGATTCA-TC------CTCCC---TCTCATTC--TC-TA---TCACAA
gi|7 : gGGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGC-CCG-GATT-GAAAA-TCATGGGC-C---CGCTCTGTA-ATTCAAAT--------GTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GTTT-ACTT-ACTG-CTTCTAGC-ACT----C----TCATAT-GACC----CTTCC----G-CCAATA-AATCGCTAT----C-CGATTCA-T-----------------GC--TC--TC-CG---TTTCCAAATCACC-----AT-TG----CA-ATA-GT-A------------C-TTT-----TTTTTT-------G-----GC-TA------AT-TTTTTTAAA-TTGGTTTTTGCCTTCTCGTAGCCActctatcattctcattttcaacccttttttcattctcattctcttcactactttcattc
gi|8 : GGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTGGG--AGC-CCA-GATT-GAAAA-TCATGGGC-C---CGCCC--------------------------GACAAT-T-TTG---C-TA-TTTTT--TC----TTTC-AT-CATTTG-TA-TCA-----------------------TTCAATT-TCCA-CTTCAAGC-ACT----C-T-TTCATAT-ACCCC-TTCTTCC----T-TCAATA-AATCACTATCTAGC-TGATATA-TC------CTCAC---TCTC--TC--TT-CG---TTTCAAAATCATCATATGAT-TG----CA-ATC-GTGA------------T-TTTTTTTATTTTTT-------G-----GT-TA------ATTTTTTTT--A-TTGG-TTTTAACTTCTTGAAG
gi|9 : gGGGTAGAAAT-TTA--GGT-AAA---TGAC--T--AAGG--A-----GCCAAACAGGT-T-CTT-AA----CAT-TAAAATTCTTGA--AGC-CTA-GATT-GAAAA-TCATGGG---------CCCATG-ATTTAAGT--------TTGT-GATAAT-T-TCA---A-TA-TT--T--TA----TTTC-AT-T-TTTATTA-TCA-TTCAA-------TT--TCT-GTTGCAATT-TCCA-CTTCAAGC-AC-----------------AACCT-TTCTTCC----T-GCAATA-AATTTCTAT----C-TGATTTA-TCTTTCCTTTCAT---TCTC--TA--TCACA---TTTC--TATCATT-----AT-TG----
Alignments
lowQualScore : 111111111 11111111111 1111 111111 33333 55555555555555 11111 3333333333333 111111
lowQualScore : 2 33 2 444 33 66 33 66666 2 2 2 5555 2 33 2 2 2 2 77777 66666 2 1 111111111 2 2 2 555 2 2 33 8888 2 2 33 3 66 0 33333333333 3 0 3 3 3 7777 777 3 4 3 1111 3 3 7777 88 3 000000 666 55 55 3 666 00000 4 9999 5 5 22222222222222 5 44444 9999999999999 5 666666 77 5 5 1
lowQualScore : . .. . ... .. .. .. ..... . . . .... . .. . . . . ..... ..... . . ......... . . . ... . . .. .... . . .. . .. . ........... . . . . . .... ... . . . .... . . .... .. . ...... ... .. .. . ... ..... . .... . . .............. . ..... ............. . ...... .. . . .
lowQualScore : 7 77 7 777 77 33 44 22222 5 5 5 3333 5 44 7 7 7 7 22222 11111 6 2 000000000 9 9 9 000 9 9 99 9999 9 9 22 1 77 5 55555555555 1 5 1 1 3 1111 888 3 2 3 7777 3 3 7777 33 6 555555 444 00 00 6 444 00000 0 4444 0 0 99999999999999 7 33333 9999999999999 7 444444 99 7 0 3
consensus : GGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGC-CCA-GATT-GAAAA-TCATGGGC-C---CGCCCCGTA-ATTTAAGT--------TTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GTTTCAATT-TCCA-CTTCAAGC-ACT----C-T-TTCATAT-ANCCC-TTCTTCC----T-CCAATA-AATCACTAT----C-CGATTCA-TC------CTCAC---TCTC--TC--TC-CG---TTTCAAAATCACC-----AT-TG----CA-ATC-GT-A------------T-TTT-----TTTTTT-------G--T--GT-TA------ATCTTTTTT--A-TTGGTTTTTAACTTCTTGTAGCCA
Reference ( family-3138 ) : GGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGC-CCA-GATT-GAAAA-TCATGGGC-C---CGCCCCGTA-ATTTAAGT--------TTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GTTTCAATT-TCCA-CTTCAAGC-ACT----C-T-TTCATAT-ANCCC-TTCTTCC----T-CCAATA-AATCACTAT----C-CGATTCA-TC------CTCAC---TCTC--TC--TC-CG---TTTCAAAATCACC-----AT-TG----CA-ATC-GT-A------------T-TTT-----TTTTTT-------G--T--GT-TA------ATCTTTTTT--A-TTGGTTTTTAACTTCTTGTAGCCA
gi|1 : GGGTGGAATT-ATA--GGTTAAA---TGTC--TT-AAGG--A-----GCCAAATGGGC-TTCCT-AG----CATTCAAAATTTTAGGGGAGC-CCA-GATT-GAAAA-TCATGGCCAC---CGCCCCCGATATCTAGCT--------TTGTCGACAATAT-TTG---C-TA-TTTC---TC----TTTC-AT-TA-TTG-TA-TCA-TTC-A-------TT--TCTAATTTCATTTCTCCAGCTTCAAGC-ACT----C-TCTTCATAT-GACCC-TTTTTCCCT--C-CCAATATAATCTCTAT----C-CGATTCATTC------CTCAC---TCTC--TCTTTC-CGGATTTTCAAAAT--TC-----AT-T-----CA-ACC-
gi|10 : AAT-TTA--GGT-AAC---TGTC--T--AATG--A-----GCCAAACGAGC-T-CCT-AG----CAT-CAAAATTTTAGG--GTC-CCA-GATT-GAAAA-TCAAGGGC-C---CGCCCTGTA-ATTTAAGT--------TTGT-GACATT-T-TTG---C-TA-TTTCT--TC----TTTC-TT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GTTTCAATT-TCCA-CTTCAAGC-ACT----C-T-TTCATAT-A-CCC-TTCTTCC----T-CCAATA-AATCACTAT----C-TGATTCA-CC------CTCAC---TCTC--TC--TC-CG---TTTCAAAATCACC-----AT-TG----CA-ATC-Gtttcactagcaaatgggcatgatacctttcattagtattttggttccttttgtttttaatttacttt
gi|11 : --A-----GCCAAACGTGCCT-CCT-AG----CAA-AAAAAATTTAGG--AGCGCCG-GATTCGAAAA-TAATGGGC-CTCCCGTCCCGTA-ATTCAAGT--------TTGT-GACAAT-TGTTG---C-TA-TTTCT--TCG---TTTCAAT-TATCTG-TA-TCA-ATCAA-------TT--TCT-G-TTCAATC-GTCA-CTTCAAGCGATT----C----TCATAT-GACCC-TTCT--C----T-GCCAT--AATTGCTAT----CTCGATT-A-TC------CTAAC---TATC--TT--CC-GG---TTTCAAAATCACC-----AT-T
gi|12 : GGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--G-----GCCAAATGGGC-T-CAT-GA----CAT-TAAAATTCTAGG---GC-CCA-GATT-GAAAA-TCAT--GCAT---TGGCCTGTA-ATTTAAGT--------CTGT-AACAAT-T-TAA------A-TTTTT--TTTAAATTTC-AT-TATTAT-TA-TTA-TTCAATTTCTGTTT--TCT-GTTTTAATT-TCCA-CTTCAAGC-ACT----C-T-TTCATAC-ACCCC-CTCTTCCTCTGT-CCGATA-AATCAC
gi|13 : GGGTGGAAAT-TTA--TGT-AAA---AGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AGCTAGCAT-CAAAATTTTAGG--AGC-CCA-GATT-GAAAA-TCACGGGC-C---CACCCCGTT-AAATAAGT--------TTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GT---AATT-TCCA-CT
gi|14 : gGGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACAGGC-T-CCT-AG----CAT-CAAAATTTTAGG--ACC-CCA-GATT-GAAAA-TCATGAGC-C---CGCCACACA-ATTTAAGT--------TTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATT
gi|15 : GGGTGGAAAT-TTA--A-T-AAA---TATC--C--AAGG--A-----GCCAGATGGTA-T-CTA-AG----CAT-TAAAATTTTAGG--GGC-TCA-GATT-AAAAA-TCATG
gi|16 : GGTGTAAAT-GTA--GGT-AAT---TGTC--T--AAGG--A-----GCCAAAC-GGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGaac
gi|17 : ------------T-TTA-----TTTTTT-------G-----GT-TA------ATCTTTTTT--A-TTGGTTTTTACCTTCTTGTAGCCA
gi|2 : ttcGGGTGGAAAT-TAA--GGT-AAA---TGTC--T--AATG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGC-CCA-GATT-GAAAA-TCATGAGC-C---CGCCTCGTA-ATTTAAGT--------TTGT-TACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTA-TA-TCA-TCCAA-------TT--TCT-GTTTCAATT-TCCA-CTTCAAGC-ACTCTAGC-T-CTCATAT-AGCCC-TTCTTCC----T-CCAATA-AATCACTAT----C-CGATTCT-TT------CTCAC---TCTC--TG--TC-CG---TTTCAAAATCACC-----AT-TG----CA-ATC-GT-A------------TATTT-----TTTTTTGAGGGGGG--T--GT-TAAAACATATCTTTTTT--A-TTGGTTTTTGCCTTCTTGTCGCCAc
gi|3 : GGGTGGAAATATTA--GGT-AAA---TGTT--TTAAGGG--A-----GCCAAACGGGC-T-CTTTAG----CAT-CAAAATTTTTAG--AGC-CCATGATT-GAAAATTCATGGGC-C---CGCCC---A-AC---------------------CAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TATTCA-TTAAA-------TTTCTCT-GTTTTCATT-TCCA-CTTCAAGC-ACT----C-T-TTCATATAAACAC---CTTCC----T--CAATA-AATCACTAT----CTTGATTCA-TC------CTCTCTCTTCTT--TC--TT-CG----TTCAAAATCACC-----ATATGATTTCA-ATC-GTGA------------T-TTT-----TTTTTT-------G--TTGGT-TA------ATCTTTTTT--ATTTGG--TTTAACTTCTTGTAGCC
gi|4 : gGGGTGGAATC-TTATGGGT-AAAAAGTGTC--T--AAAGCGA-----GCCAA--GGGC-A-ACT-AG----CAT-CAACAATTGAGG--AGC-CCA-GATT-GAAAA-TCATGG----------CCCG-------------------------ACCAT-----G---CGTAGTTTCT--TC---------ATGTATTT--TA-TCAATTCAAG------TTA-TCT-GATTTAAAT-TTCA-CTACAAGC-ACT----CAT-TTCAT-T-ACCCCATTCTTCC----TTCCAATA-A-TCACTAT----C-TGATTCA-TC------ATCAT---CCTC--TC---C-CG----TTCAAAATCACCACATAAT-TG----CAGATCGGT-GATTTTTTCTTGTT-TTT-----TTTTTT-------T--T--GT-TT------ATCTTTTTT--A-TGGGTTTTTAACT--TTGTAGC
gi|5 : agGGCTGGAAAT-TTA--GGT-AAA---TGTCCAT--AAGA--ATTTAAGCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGT-CCA-GATT-GAAAA-TCATGGGC-C---CGCC-------------------------T-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-----------------------TTCAATT-TCCA-CCTCAAGC-ACT----C-T-TTCATAT-ACCCC-TTCTTCC----T-CCAATA-AATCAC--T----C-TGATCCA-TC------CTCAC---TCTC--TC--TC-CT---TTTAAAAATGACCATATGAT-TG----CA-ATT-GT-GATTTT-------T-TTT-----TTTTTT-------GGTT--GTATA------ATCTTTTTT--A-TTGGTTTTTAACTTCTTGTAGCC
gi|6 : gGGTTGGAAAT-TTA--GGT-ATG---CATC--T--AAGG--A-----GCCAAGCGGGC-T-CCT-AG----CAT-TAAAATTTTAGG--AGC-CCG-GAGT-AAAAA-TTATGGG---------CCCGTA-ATTTAAATAACATCAATTGT-AATAAG-T-TTGTCAC-AA-TTTCTAATC----T-----T-TATTTC-T--TCATTTCTA--------T--TCC-ATTTCGATT-TCCA-TT-------ATT----C-T-CTCAAAC-ACACC-TTCTTCC----T-CTGATA-ATTCACTCT----C-AGATTCA-TC------CTCCC---TCTCATTC--TC-TA---TCACAA
gi|7 : gGGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGC-CCG-GATT-GAAAA-TCATGGGC-C---CGCTCTGTA-ATTCAAAT--------GTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GTTT-ACTT-ACTG-CTTCTAGC-ACT----C----TCATAT-GACC----CTTCC----G-CCAATA-AATCGCTAT----C-CGATTCA-T-----------------GC--TC--TC-CG---TTTCCAAATCACC-----AT-TG----CA-ATA-GT-A------------C-TTT-----TTTTTT-------G-----GC-TA------AT-TTTTTTAAA-TTGGTTTTTGCCTTCTCGTAGCCActctatcattctcattttcaacccttttttcattctcattctcttcactactttcattc
gi|8 : GGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTGGG--AGC-CCA-GATT-GAAAA-TCATGGGC-C---CGCCC--------------------------GACAAT-T-TTG---C-TA-TTTTT--TC----TTTC-AT-CATTTG-TA-TCA-----------------------TTCAATT-TCCA-CTTCAAGC-ACT----C-T-TTCATAT-ACCCC-TTCTTCC----T-TCAATA-AATCACTATCTAGC-TGATATA-TC------CTCAC---TCTC--TC--TT-CG---TTTCAAAATCATCATATGAT-TG----CA-ATC-GTGA------------T-TTTTTTTATTTTTT-------G-----GT-TA------ATTTTTTTT--A-TTGG-TTTTAACTTCTTGAAG
gi|9 : gGGGTAGAAAT-TTA--GGT-AAA---TGAC--T--AAGG--A-----GCCAAACAGGT-T-CTT-AA----CAT-TAAAATTCTTGA--AGC-CTA-GATT-GAAAA-TCATGGG---------CCCATG-ATTTAAGT--------TTGT-GATAAT-T-TCA---A-TA-TT--T--TA----TTTC-AT-T-TTTATTA-TCA-TTCAA-------TT--TCT-GTTGCAATT-TCCA-CTTCAAGC-AC-----------------AACCT-TTCTTCC----T-GCAATA-AATTTCTAT----C-TGATTTA-TCTTTCCTTTCAT---TCTC--TA--TCACA---TTTC--TATCATT-----AT-TG----
blockSeqs : A TG . AAG CA TA CG TTTAA C . T CTAG . . G T C T CTCC TGTA T G AACATCAAT . . G TCA G G AA TAAA A G AT T AT TTTCTGTTT . . . G CTAG AT A A A TCTG T . CTAG TC . TTTCCT TCT AT . A . ACATA A ATTT G G GATTTTTTCTTGT A TTTTA GAGGGGGGT A AAACAT AA T T C
blockSeqs : . . . . . . . . . . . . . . . . . . AT CGTA T G T . . . . . . . G . . G . TT TTTC . . . . . T . C . . . . . TT . . . . . . . ATATG . . . . GATTTT . . GTTG . . . . T A
blockSeqs : . . . . . . . . . . . . . . . . . . C TGTA T G T . . . . . . . . . . G . T GTTA . . . . . T . G . . . . . T . . . . . . . ATATG . . . . GA . . GGTT . . . . T A
blockSeqs : . . . . . . . . . . . . . . . . . . C CGTT A G C . . . . . . . . . . T . A TT . . . . . T . A . . . . . C . . . . . . . . . . . . GA . . TT . . . . T A
blockSeqs : . . . . . . . . . . . . . . . . . . C CACA T G T . . . . . . . . . . G . T TT . . . . . T . C . . . . . T . . . . . . . . . . . . A . . G . . . . . C
blockSeqs : . . . . . . . . . . . . . . . . . . C CGTA T G T . . . . . . . . . . A . T TT . . . . . T . C . . . . . T . . . . . . . . . . . . . . G . . . . . A
blockSeqs : . . . . . . . . . . . . . . . . . . C CGTA T A T . . . . . . . . . . G . T TT . . . . . T . C . . . . . A . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . C TGTA T A G . . . . . . . . . . G . T TT . . . . . T . A . . . . . C . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . C CATG T G T . . . . . . . . . . C . T TT . . . . . . . C . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . C CG . . . . . . . . . . . . . G . T T . . . . . . . A . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . G . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : ** ** C**** CGTA* T** **** ** *** GATTTT********
originalCons : GGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGC-CCA-GATT-GAAAA-TCATGGGC-C---CGCCCCGTA-ATTTAAGT--------TTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GTTTCAATT-TCCA-CTTCAAGC-ACT----C-T-TTCATAT-ANCCC-TTCTTCC----T-CCAATA-AATCACTAT----C-CGATTCA-TC------CTCAC---TCTC--TC--TC-CG---TTTCAAAATCACC-----AT-TG----CA-ATC-GT-A------------T-TTT-----TTTTTT-------G--T--GT-TA------ATCTTTTTT--A-TTGGTTTTTAACTTCTTGTAGCCA
finalCons : GGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGC-CCA-GATT-GAAAA-TCATGGGCC----CGCCCCGTA-ATTTAAGT--------TTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GTTTCAATT-TCCA-CTTCAAGC-ACT----CT--TTCATAT-ANCCC-TTCTTCC----T-CCAATA-AATCACTAT----C-CGATTCA-TC------CTCAC---TCTC--TC--TC-CG---TTTCAAAATCACC-----AT-TG----CA-ATC-GTGATTTT--------T-TTT-----TTTTTT-------G--T--GT-TA------ATCTTTTTT--A-TTGGTTTTTAACTTCTTGTAGCCA
Alignments
lowQualScore : 111111111 11111111111 111111 1111 11 22222222222 1111111 33333333 111111
lowQualScore : 2 33 2 444 33 66 33 66666 2 2 2 5555 2 33 2 2 2 2 77777 66666 2 1 111111111 2 2 2 555 2 2 33 8888 2 2 33 3 66 0 33333333333 3 0 3 3 3 444444 3 4 3 1111 3 3 7777 88 3 666 00 55 666 11111111111 4 9999 4 5 99 6666666 5 888 88888888 5 666666 77 5 5 1
lowQualScore : . .. . ... .. .. .. ..... . . . .... . .. . . . . ..... ..... . . ......... . . . ... . . .. .... . . .. . .. . ........... . . . . . ...... . . . .... . . .... .. . ... .. .. ... ........... . .... . . .. ....... . ... ........ . ...... .. . . .
lowQualScore : 7 77 7 777 77 33 44 22222 5 5 5 3333 5 44 7 7 7 7 22222 11111 6 2 000000000 9 9 9 000 9 9 99 9999 9 9 22 1 77 5 55555555555 1 5 1 1 3 999999 3 2 3 7777 3 3 7777 33 6 444 00 00 444 00000000000 0 4444 4 0 99 2222222 0 888 66666666 7 444444 99 7 0 3
consensus : GGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGC-CCA-GATT-GAAAA-TCATGGGC-C---CGCCCCGTA-ATTTAAGT--------TTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GTTTCAATT-TCCA-CTTCAAGC-ACTC-T----TTCATAT-ANCCC-TTCTTCC----T-CCAATA-AATCACTAT----C-CGATTCA-TCCTCAC---TCTC--TC--TCCG---TTTCAAAATCACC-----A-----T-TG----CA-ATCG-TGATTTTTT-------TT-T---TTTTTG-------TGT-TAA------TCTTTTTT--A-TTGGTTTTTAACTTCTTGTAGCCA
Reference ( family-3138 ) : GGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGC-CCA-GATT-GAAAA-TCATGGGC-C---CGCCCCGTA-ATTTAAGT--------TTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GTTTCAATT-TCCA-CTTCAAGC-ACTC-T----TTCATAT-ANCCC-TTCTTCC----T-CCAATA-AATCACTAT----C-CGATTCA-TCCTCAC---TCTC--TC--TCCG---TTTCAAAATCACC-----A-----T-TG----CA-ATCG-TGATTTTTT-------TT-T---TTTTTG-------TGT-TAA------TCTTTTTT--A-TTGGTTTTTAACTTCTTGTAGCCA
gi|1 : GGGTGGAATT-ATA--GGTTAAA---TGTC--TT-AAGG--A-----GCCAAATGGGC-TTCCT-AG----CATTCAAAATTTTAGGGGAGC-CCA-GATT-GAAAA-TCATGGCCAC---CGCCCCCGATATCTAGCT--------TTGTCGACAATAT-TTG---C-TA-TTTC---TC----TTTC-AT-TA-TTG-TA-TCA-TTC-A-------TT--TCTAATTTCATTTCTCCAGCTTCAAGC-ACTC-TC---TTCATAT-GACCC-TTTTTCCCT--C-CCAATATAATCTCTAT----C-CGATTCATTCCTCAC---TCTC--TCTTTCCGGATTTTCAAAAT--TC-----A-----T-T-----CA-ACC
gi|10 : AAT-TTA--GGT-AAC---TGTC--T--AATG--A-----GCCAAACGAGC-T-CCT-AG----CAT-CAAAATTTTAGG--GTC-CCA-GATT-GAAAA-TCAAGGGC-C---CGCCCTGTA-ATTTAAGT--------TTGT-GACATT-T-TTG---C-TA-TTTCT--TC----TTTC-TT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GTTTCAATT-TCCA-CTTCAAGC-ACTC-T----TTCATAT-A-CCC-TTCTTCC----T-CCAATA-AATCACTAT----C-TGATTCA-CCCTCAC---TCTC--TC--TCCG---TTTCAAAATCACC-----A-----T-TG----CA-ATCG-tttcactagcaaatgggcatgatacctttcattagtattttggttccttttgtttttaatttacttt
gi|11 : --A-----GCCAAACGTGCCT-CCT-AG----CAA-AAAAAATTTAGG--AGCGCCG-GATTCGAAAA-TAATGGGC-CTCCCGTCCCGTA-ATTCAAGT--------TTGT-GACAAT-TGTTG---C-TA-TTTCT--TCG---TTTCAAT-TATCTG-TA-TCA-ATCAA-------TT--TCT-G-TTCAATC-GTCA-CTTCAAGCGATTC-------TCATAT-GACCC-TTCT--C----T-GCCAT--AATTGCTAT----CTCGATT-A-TCCTAAC---TATC--TT--CCGG---TTTCAAAATCACC-----A-----T-T
gi|12 : GGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--G-----GCCAAATGGGC-T-CAT-GA----CAT-TAAAATTCTAGG---GC-CCA-GATT-GAAAA-TCAT--GCAT---TGGCCTGTA-ATTTAAGT--------CTGT-AACAAT-T-TAA------A-TTTTT--TTTAAATTTC-AT-TATTAT-TA-TTA-TTCAATTTCTGTTT--TCT-GTTTTAATT-TCCA-CTTCAAGC-ACTC-T----TTCATAC-ACCCC-CTCTTCCTCTGT-CCGATA-AATCAC
gi|13 : GGGTGGAAAT-TTA--TGT-AAA---AGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AGCTAGCAT-CAAAATTTTAGG--AGC-CCA-GATT-GAAAA-TCACGGGC-C---CACCCCGTT-AAATAAGT--------TTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GT---AATT-TCCA-CT
gi|14 : gGGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACAGGC-T-CCT-AG----CAT-CAAAATTTTAGG--ACC-CCA-GATT-GAAAA-TCATGAGC-C---CGCCACACA-ATTTAAGT--------TTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATT
gi|15 : GGGTGGAAAT-TTA--A-T-AAA---TATC--C--AAGG--A-----GCCAGATGGTA-T-CTA-AG----CAT-TAAAATTTTAGG--GGC-TCA-GATT-AAAAA-TCATG
gi|16 : GGTGTAAAT-GTA--GGT-AAT---TGTC--T--AAGG--A-----GCCAAAC-GGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGaac
gi|17 : TTCTT-------TA-T---TTTTTG--------GT-TAA------TCTTTTTT--A-TTGGTTTTTACCTTCTTGTAGCCA
gi|2 : GGGTGGAAAT-TAA--GGT-AAA---TGTC--T--AATG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGC-CCA-GATT-GAAAA-TCATGAGC-C---CGCCTCGTA-ATTTAAGT--------TTGT-TACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTA-TA-TCA-TCCAA-------TT--TCT-GTTTCAATT-TCCA-CTTCAAGC-ACTC-TAGCTCTCATAT-AGCCC-TTCTTCC----T-CCAATA-AATCACTAT----C-CGATTCT-TTCTCAC---TCTC--TG--TCCG---TTTCAAAATCACC-----A-----T-TG----CA-ATCG-TA----TAT-------TT-T---TTTTTGAGGGGGGTGT-TAAAACATATCTTTTTT--A-TTGGTTTTTGCCTTCTTGTCGCCAc
gi|3 : GGGTGGAAATATTA--GGT-AAA---TGTT--TTAAGGG--A-----GCCAAACGGGC-T-CTTTAG----CAT-CAAAATTTTTAG--AGC-CCATGATT-GAAAATTCATGGGC-C---CGCCC---A-AC---------------------CAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TATTCA-TTAAA-------TTTCTCT-GTTTTCATT-TCCA-CTTCAAGC-ACTC-T----TTCATATAAACAC---CTTCC----T--CAATA-AATCACTAT----CTTGATTCA-TCCTCTCTCTTCTT--TC--TTCG----TTCAAAATCACC-----A-----TATGATTTCA-ATCG-TGA-TTTTT-------TT-T---TTGTTG--------GT-TAA------TCTTTTTT--ATTTGG--TTTAACTTCTTGTAGCC
gi|4 : gGGGTGGAATC-TTATGGGT-AAAAAGTGTC--T--AAAGCGA-----GCCAA--GGGC-A-ACT-AG----CAT-CAACAATTGAGG--AGC-CCA-GATT-GAAAA-TCATGG----------CCCG-------------------------ACCAT-----G---CGTAGTTTCT--TC---------ATGTATTT--TA-TCAATTCAAG------TTA-TCT-GATTTAAAT-TTCA-CTACAAGC-ACTCAT----TTCAT-T-ACCCCATTCTTCC----TTCCAATA-A-TCACTAT----C-TGATTCA-TCATCAT---CCTC--TC---CCG---TT-CAAAATCACC-----ACATAAT-TG----CAGATCGGTGATTTTTTCTTGTTTTT-T---TTTTTT-------TGT-TTA------TCTTTTTT--A-TGGGTTTTTAACT--TTGTAGC
gi|5 : agGGCTGGAAAT-TTA--GGT-AAA---TGTCCAT--AAGA--ATTTAAGCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGT-CCA-GATT-GAAAA-TCATGGGC-C---CGCC-------------------------T-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-----------------------TTCAATT-TCCA-CCTCAAGC-ACTC-T----TTCATAT-ACCCC-TTCTTCC----T-CCAATA-AATCAC--T----C-TGATCCA-TCCTCAC---TCTC--TC--TCCT---TTTAAAAATGACCATATGA-----T-TG----CA-ATTG-TGATTTTTT-------TT-T---TTTTTGGT-----TGTATAA------TCTTTTTT--A-TTGGTTTTTAACTTCTTGTAGCC
gi|6 : gGGTTGGAAAT-TTA--GGT-ATG---CATC--T--AAGG--A-----GCCAAGCGGGC-T-CCT-AG----CAT-TAAAATTTTAGG--AGC-CCG-GAGT-AAAAA-TTATGGG---------CCCGTA-ATTTAAATAACATCAATTGT-AATAAG-T-TTGTCAC-AA-TTTCTAATC----T-----T-TATTTC-T--TCATTTCTA--------T--TCC-ATTTCGATT-TCCA-TT-------ATTC-T----CTCAAAC-ACACC-TTCTTCC----T-CTGATA-ATTCACTCT----C-AGATTCA-TCCTCCC---TCTCATTC--TCTA---TCACAA
gi|7 : gGGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTAGG--AGC-CCG-GATT-GAAAA-TCATGGGC-C---CGCTCTGTA-ATTCAAAT--------GTGT-GACAAT-T-TTG---C-TA-TTTCT--TC----TTTC-AT-TATTTG-TA-TCA-TTCAA-------TT--TCT-GTTT-ACTT-ACTG-CTTCTAGC-ACTC-------TCATAT-GACC----CTTCC----G-CCAATA-AATCGCTAT----C-CGATTCA-T-----------GC--TC--TCCG---TTTCCAAATCACC-----A-----T-TG----CA-ATAG-TA-----CT-------TT-T---TTTTTG--------GC-TAA------T-TTTTTTAAA-TTGGTTTTTGCCTTCTCGTAGCCActctatcattctcattttcaacccttttttcattctcattctcttcactactttcattc
gi|8 : GGGTGGAAAT-TTA--GGT-AAA---TGTC--T--AAGG--A-----GCCAAACGGGC-T-CCT-AG----CAT-CAAAATTTTGGG--AGC-CCA-GATT-GAAAA-TCATGGGC-C---CGCCC--------------------------GACAAT-T-TTG---C-TA-TTTTT--TC----TTTC-AT-CATTTG-TA-TCA-----------------------TTCAATT-TCCA-CTTCAAGC-ACTC-T----TTCATAT-ACCCC-TTCTTCC----T-TCAATA-AATCACTATCTAGC-TGATATA-TCCTCAC---TCTC--TC--TTCG---TTTCAAAATCATCATATGA-----T-TG----CA-ATCG-TGATTTTTT-------TTAT---TTTTTG--------GT-TAA------TTTTTTTT--A-TTGG-TTTTAACTTCTTGAAG
gi|9 : gGGGTAGAAAT-TTA--GGT-AAA---TGAC--T--AAGG--A-----GCCAAACAGGT-T-CTT-AA----CAT-TAAAATTCTTGA--AGC-CTA-GATT-GAAAA-TCATGGG---------CCCATG-ATTTAAGT--------TTGT-GATAAT-T-TCA---A-TA-TT--T--TA----TTTC-AT-T-TTTATTA-TCA-TTCAA-------TT--TCT-GTTGCAATT-TCCA-CTTCAAGC-AC----------------AACCT-TTCTTCC----T-GCAATA-AATTTCTAT----C-TGATTTA-TCTTTCC---TTTCATTC--TCT-----------ATCA-C-----A-----T-TT----CT-ATCA-TTATTGGTT-------TT-TGCCTTCTTG-------T