lowQualScore : 22 33333 33 1 22222 111 1 11 11111 1 22 11111 11 222222 111111111 1111111111 3333333333333333333 111 1111111111111 11111 11111 2222222222222222222222222222 8888888888888888888888888888888888888888888888888888888888 111111111 111
lowQualScore : 77 6 2 88888 11 8 3 88888 666 4 0 8 99 0 8 3 33333 3 6 6 6 22 99 6 6 5 5 11 22222 00 4 4 66666 4 0 3 3 3 77 5 66 3 44 44 44 3 44 3 6666 777777 8888 555555555 3333333333 9999999 8888888888888888888 2 2 2 2 999 444 4444444444444 00000 44444 1111111111111111111111111111 77777 555 999999 3 7777777777777777777777777777777777777777777777777777777777 1 3 4 666666666 222 4
lowQualScore : .. . . ..... .. . . ..... ... . . . .. . . . ..... . . . . .. .. . . . . .. ..... .. . . ..... . . . . . .. . .. . .. .. .. . .. . .... ...... .... ......... .......... ....... ................... . . . . ... ... ............. ..... ..... ............................ ..... ... ...... . .......................................................... . . . ......... ... .
lowQualScore : 55 0 5 00000 77 3 3 77777 555 0 0 0 00 8 0 2 00000 3 7 7 7 55 22 7 7 0 7 33 55555 66 0 0 66666 3 4 3 3 3 99 4 33 5 22 22 22 1 22 4 5555 999999 5555 444444444 4444444444 3333333 3333333333333333333 5 5 5 7 777 777 7777777777777 33333 44444 6666666666666666666666666666 77777 444 666666 3 3333333333333333333333333333333333333333333333333333333333 7 3 8 999999999 777 4
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGAAGACACTTATCATTTTTCGTGTGTGCGTGTGCGTGATAGATATAGA-AAAAGCA-AG-ACT-TTCNGTGNT-GGATAAT-TTG--TTA-ATCGTAA--A--CAA-CTTTT-AT-C-TT-ATT--AA-TG-TTCATTTA-TTGTTGTGGG-----GTG--ATGA-ATCTCT-TC-C---TGAGGATGA-C-AATA-TG--AAACTTTTTGCTATTG-TTCAGAAATA--CATA--CGCGATA--CT-G--GTCGT----TT-TAA-TTTT----TTATTTT---------AATTTTGCTC-------AN-TGCTAA-------TAT-N--AA-----A-------TGTA-A-A-T-GAT--AGATA---T-------------TAT-G---ATGA----TTTT------C-----T-----G---------TTT-----CA---CACT------T-ACGAATA-------------T-------------T-------------G---TA-----------AAT-GTATGGCNC-GT--ATGN--TTGTACA-TTATT
Reference ( gi|3 ) : TTCTAGTCCAAATTGTGAATGTGGTCTTCAGGAAGACACTTAT--TTCTTTGTGTGTGTGTGTGCGTGATAGATATAG--AAATGCA-AG-ACT-TTCGATGAT-GGATAAT-TTG--TTA-ATCGTAA--A--CAA-CTTTT-AT-C-T--ATT--AA-TG-TTCATTTA-TTATTGTGGG-----GTG--ATGA-ATCTCT-TC-C---TGAGAATGA-C-AATA-TG--AAACTTTTTACTATTG-TTCAAAAATA--CATA--CGCGATA--CT-G--GTTGT----TT-CAAATTTT----TTATTTT---------AATTTTGCTC-------AT-TGCTAA-------TAT-T--AA-----T-------TATA-A-A-T-GAT--CGATA---T-------------TAT-A---ATGG----TTTT------C-----T-----G---------TTT-----CA---CACT------T-ACGAATA-------------T-------------T-------------G---TA-----------AAT-GTATGGCTC-AT--ATGT--TTGTACA-TTATT
gi|29 : CAGGAAGACACTTATCATTTTTTGTGTGTGTGT----GTGATAGATATAGA-AAAAGCA-AG-ATT-T
gi|18 : --TTTTTCGTGTGTGCTTGTGC-TGATAGATATAGAAAAAAGCACAG-A---TTCTGTGTTCGGATAAT-TTGC-TTAGATGGTAA--A--CAAGCTTGTAAT-CTT--ATTACAA-TG-CT
gi|1 : TAG--AAATGTA-AGGACTCTTCGA-GAT-GGGTAAT-TTGATTTA-ATCGTAG--AACCAA-CTTTT-CTTC-T--TTT--AA-TGCTTCATTTAATTATTGTGGGCAGAGGTGCTATGA-ATCTCT-TC-CCCTTGAGGATGAAC-AATACTG--AAACTTTTT-----TA-CTCGA---T-----TA--TGCGATA--CT-G--GTCGTCCTTTTACATATTTT----TTATTCT---------CATTTTGCTC-------AA-TGCTAAATTAGAATAT-T--AAGGATCT-------TGTACA-A-TTGAT--GGAT----C-------------TATTG---ATCGAGTCTTTC------C-----T-----G---------TTG-----CAGTTCACTGCATAGT-ACGAATA-------------TGAT----------T-------------G---TA-----------ACTTGTATA---------ATGT--TTGCACA--TATT
gi|17 : -GGATAAT-TTA--TTA-ATCGTGA--A--CAA-CTTTT-AT-C-TT-ATT--GA-TG-TTCATTTA-TTGTTTTGGG-----GAG--ATGG-ATCTCT-TC-C---TAAGGATGA-C-AATA--G--AAAATTGTTACTATTG-TTCAGAActaagggacaggggaaaaatctaagttttggaatttgtatccaatcctctcgtcagtttaggcaatgaatttgttacaaatgtaaaacc
gi|12 : -GGATAATATTG--T-A-ATGGTAAGAA--CAAACTTTT-AT-C-TTAATC--AAATG-TT--TTTA-TTGTAGTGAG-----GTGG-ATGATATCTCT-TC-T---TGAGGAT-A-CGAATA-TG--AAACTTTTTACT-TTG-TTCAGAAATA--CATATGCACAACA--CTGG--GTCGT----TT-TAA
gi|2 : GATGAT-TTA--TTT-ATTGTGA--A--CAA-TTTTT-GT-C-TT-ATT--TA-CG-TTCACTTA-TTATTTTGAG-----GTG--ATGG-ATCTGT-TT-C---TGAATAAGA-C-AATA-TG--AAGCTTTTTGTTATTG-ATCAGAAATG--CATA--CGTGATA--CT-G--GTCG-------------TTT----TTATTTT----------ATTTCTCTCCAAGTTAATGTACAAG-------TGT-TGAAG-----TGAAACAATGTA-A-G-C-GAT--AGACA---T-------------TAT-AATGATGA----TTTT------C-----C-----G---------TCTTTTCCCA---CACT------T-ATTAATA-------------TCTAAATGGTCACCT-------------G---TAT----------ATT-GTATGCCTT-AT--GCGA--CTGTATA-TCATT
gi|7 : AA-CCTTA-AC-T-T--ATT--AA-TG-TTAATTTA-TTATCTTAGG-----GTG--ATGA-ATCTCT-TC-C---GAAGGATGA-A-AATA-TG--AAACTTTTAACTACTGTTTCAGAAATA--CATG--AGCGATA--CT-G--GTCGT----TT-TAATTTTTTATGTTATTTTTTTTATTCGAATTGTGCTC-------AT-TGCTAA-------TAT-A--AA-----A-------CGTC-A-A-T-AAT--AGATA---T-------------TAT-A---ATtaattaaaggagaagagtatttaagttttggaacttgtattcattccttttgcctaattggcaatgagatgtgt
gi|22 : tactgattttgaTTA-TTGTAGTGGG-----GTA--ATGA-ATCTCT-TC-T---TGAGGATAA-C-AATA-TG--AAACTTTTTACTATTG-TTCAGAAATA--CATA--TGCAACA--CT-G--GTCGT----TT-TA
gi|23 : A-TTATTG--GG-----TTG--ATGA-ATTTCT-TC-C---TGAGGATAA-C-AATA-TGG-AAACATTTTACTATTG-TTCAGAAATA--CATA--CGCGAAA--CT-GCTGTCGT----TT-AAA
gi|13 : TGGG-----GTG--ATGA-ATCTCT-TC-C---TGAGGATGA-C-TATA-TG--AAACTTTTT------G-TTCAGAAATA--CATA--TGCGATA--CT-G--GTCGT----TT-CAATTTTT----TTATTCT---------AATTTTGCTC-------AA-AGCTGA-------TAT-A--AG-----A-------TGTA-A-A-T-GAT--AGATA---T-------------TAT-G---ATGA----TTTT------
gi|9 : TG--ATGA-GTTTAT-TGAT---TGTGAGTAG-G-AATA-CACCAAGCGTTTTGTTACTG-CTCAGAAGTAATCATA--TA--ATA--CT-G--GTTGT----TT-CGA---TT----TTGCTTC---------AAATT
gi|4 : attttca-ATCTCTATC-A---TAAGAG-GA-G-GATG-TG--AAGCTTCTTGTTATTG-GTCGGGAAAA--CACA--CGTGATA--CT-G--GTCGT----TT-GA------------ATTCT---------AATTATGCAA-------A---G--AA-------TGT-A--AG-----C-------GATA-T-A-T--ATTGTGATAACTT-------------CAT-A---CT------TTTT------C-----T-----GTCTT-----TCT-----CA---CACT------T-ATGAATA-------------T-------------T-------------GAAATAGTCATTTATACAAT-GTATGA--C-AT--ATGTTATTGTAAA-aatatacaagcattcgattacaaccatgtattaataagcaatagacaatatg
gi|5 : c-C---TGAGGAGAG-C-AGTA-TG--AATCTTTTTGTTATTG-CTCAGAAATA--CATA--CGTGATA--CT-G--GTCGT----TT-TA---TTT----TTATTTTG--------AATTTT-CTC-------AG-TG-TAA-------CATAC--AA-------------TATA-A-A-C-GAT--AGATA---CGTGTACTACTGAGTAT-G---ATGA----TTTTTCTGTCT-----T-----G---------TCT-----CA---CACT------T-ACAAATA-------------T-------------TCAATTGGCAACTCG---TA-----------ATT-GAATTGCAC-AT--GTGA--TTGTACA-gcatatctttaaaagagaggattatctcagttttggaacttgcacccaaccgcaattggcaataaaatatgttcaaagcctatcaaatcaaatcatcgttattgatatgtttttagtcattcaca
gi|30 : tgtttggcgtctttaataaatA-C-AATG-TG--AAACTTTTTGC-ATAG-----AGAA-----ATA--CGCAATA--CT-G--GTAGT----TT-T-AATTTT----Tgggttatctaagttttggatcttgtatccaatccctttggcaataaat
gi|16 : ATA--TATA--CGTGATA--CT-G--GTTGT----TC-CCA-TTTT----TTATTTG---------AATTTTGCTC-------AT-TGCTAA-------TA--A--AA-----A-------TATA-A-A-T-GAT--AGCTA---T-------------TAT-G---ATGA----TTTT------------T-----G---------TTT-----CA---CACT------T-ACGAATA-------------T-------------------------------TA-----------AAT-
gi|28 : cATA--CATA--AGCAATGTTCT-G--GTTGT----TT-TAA-TTTC----TGGTTCT---------AATTTTGCTC-------AT-TGCTAA-------TATAC--AA-------------TATA-A-A-
gi|25 : TT---------AATTTTGCTC-------AA-TGCTAA-------C---T--AG-----T--------ATA-A-A-T-A-----GCTA---T-------------AAT-G---ATGA----TTTT------C-----T-----T---------TTT-----TA---CACT------T-ACGAGTA-------------T-------------T-----------------CA-----------AAT-Ga
gi|6 : T---------AATTTTGCCC-------AA-TGCTAA-------TAT-A--AA-----A-------TGTA-A-A-T-GAT--GGGTA---T-------------TAT-G---ATGA----TTTA------C-----T-----G---------TTT-----CA---CACT------T-ACGAATA-------------T-------------T-----------------CA-----------ATT-G-GTAACTT-GTAGATGT--TTGTACA-TTA
gi|14 : T---------AACCCTGCTT-------GA-TGCTAA-------CAT-C--AA-----A-------CGTA-A-A-T-GAT--AGATA---T-------------GAT-G---ATGA----ATTT------C-----T-----G---------CGT-----CA---CACT------T-ACGAATA-------------T-------------TCGATTGATAACTTG---TA-----------AAC-GTATGGCAC-ATA-ATGG--CTGTACA-TGATTgtttaaggagaggattatctaagttttggaacttgtatcaaatctttttgggaagaaaatacatgcatgttcaaatcaacatacactgtcgagtttttaatgttttatat
gi|11 : g---------AATTTTTC-C-------AA-TGCTA--------TAT-A--AA-----A-------TGTA-ATA-T-GAG---GGTA---T-------------TAT-G---ATGA----TTA-------C-----T-----G---------TTT------A---CACT------T-ACGAATA-------------T-------------T-----------------CA-----------ATT-G-GTAACTT-GTAGATGT--TTGTACA-TTAta
gi|8 : TTTGCTC-------AA-TGCTAA-------TAT-G--AAA----TG------TATA-A-AAT-GAT--AGATA---T-------------TAT-G---ATGA----TTTT------C-----TGTTTTG---------TTT-----CA---CACT------T-ACGAATATTCAATTGGTAACT-------------T-------------G---TA-----------AAT-GTATGGCTC-AT--TTGT--TTGTACATTTATTgtttaaggagaggattatctaagtttggaacttgtatcaaatctttttgga
gi|27 : CTC-------AT-TGCTAA-------TAT-A--AA-----A-------TGTA-A-A-T-GAT--AGGTA---T-------------TAT-G---ATGA----TTTT------C-----T-----G---------TTT-----CA---CAtaaaggagaggattatctaagttttggaacttatatccgatcttttt
gi|19 : -------TGTA-A-A-T-GAT--AGATA---T-------------TAT-G---ATCGAC--TTTT------CTGTCTT-----G---------TCT-----CA----ACT------TAATGGTTAAC-----------T-------------T-------------G---TA-----------AAT-GTATGGCACAAT--ATGGA-TTGTACA-TTATTtgaatgtcaatttcggcaa
gi|20 : ttatacaaTA-A-A-T-GAT--AGATA---T-------------TAT-G---ATGA----TTTT------C-----T-----GGGTTTTTTTTTT-----CA---CATG------T-AGGGATA-------------T-------------T-------------T---TA-----------AAT-Gt
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): GTCTTTTTTCACAGTTGGGAACATCTAAATGGCCAAATACACAGTGTATGACAAGTGTGATTGTAAAATATATGTGTATTATATAAAGCAGAGGATTATCTAAGTTTTGTAACTTGCATTAAATCTTTTTTTCTAAATGACTCTAAAATATGTCG
Unaligned ( gi|15 ): TGTAACTATTGTATTTTATTGCAAAAATTGACAAAAGGATTGGATTAATTTATTTTTGAAACTTTTATTCAATCCTTTTGTCAATTTTGGCTATGAAATATGTTCAAATCAAATAAAAACT
Unaligned ( gi|21 ): CACACTAACGCATATTCAATTGGTATCTTGTTAAAATATGGCATATATGTTTGTATGTTATTTAATAAGATTATTTTCGTCCGATGTTTTTGTAA
Unaligned ( gi|24 ): AATATTTAAAGGAGAGGATTATATAAGTTTGTGAAACTCCTTGTGTCTTATTTGGCAATAAAATATGTTCAAATCAAAT
Unaligned ( gi|26 ): AAAAAGAGAGGGTTATCTAAGTTTTGAAACTTGCGTCCTATCCTCTTGTCCTTTTTGGCAATACATATTGTTCAAA
Alignments
lowQualScore : 11 22 1 11111 1 11 1 11 11111 1111111111 11111111111111 1111111111111 111111111 11111111111111111111111 555555555555555555555555555555555555555555555 1111111
lowQualScore : 88 0 0 11 0 88888 2 0 6 1 1 8 6 55 6 1 99999 3 5 55 5 2 5 11 11111 99 3 3 666 555 3 3 3 3 0 55 33 33 33 2 33 555 88888 4 9999 6666666666 55555555555555 1 8888888 55555 66666 666 2 2 3333333333333 444 2 5 888888888 88888888888888888888888 77777 555 888888 3 555 666666666666666666666666666666666666666666666 3 8 1 5555555 4 1 55 4
lowQualScore : .. . . .. . ..... . . . . . . . .. . . ..... . . .. . . . .. ..... .. . . ... ... . . . . . .. .. .. .. . .. ... ..... . .... .......... .............. . ....... ..... ..... ... . . ............. ... . . ......... ....................... ..... ... ...... . ... ............................................. . . . ....... . . .. .
lowQualScore : 00 7 7 77 0 22222 5 0 5 0 0 0 7 88 7 0 33333 3 7 77 7 5 7 33 11111 55 6 6 444 888 1 1 1 1 7 22 99 99 99 9 99 000 55555 4 4444 5555555555 77777777777777 9 7777777 88888 22222 555 4 4 8888888888888 444 5 0 000000000 00000000000000000000000 11111 000 888888 1 444 666666666666666666666666666666666666666666666 1 3 4 8888888 0 0 55 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGAAGACACTTATCATTTTTCGTGTGTGCGTGTGC-TGATAGATATAG-AAA---AAGCA-AGACTTTCCGTGAT-GGATAAT-TTG--TTA-ATCGTAA--A--CAA-CTTTT-ATCTTATT--AATG-TTCATTTA-TTGTTGTGGG-----GTG--ATGA-ATCTCT-T---CC---TGAGGATG-AC-AATA-TG-AAACTTTTTGCTATTG-TTCAGAAATA--CATA--CGCGATA--CT-G--GTCG---TTTTA---A-TTTTTT-AT----TTT----------AATTTTGCTC--------------ANTGCT-------AATATAA---AA-----TGTA---A-A-TGATAGATAT-------------T---A-TGAT-GA---------TTTT------C-----TG---------TTT-----CA---CACT------T-ACGAAT---A-------------TT-------------G---TA-----------AA-TGTATGGCNC-GT--AT-GNTTGTA--CA-TTATT
Reference ( family-3104 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGAAGACACTTATCATTTTTCGTGTGTGCGTGTGCGTGATAGATATAG-AAA---AAGCA-AGACTTTCNGTGNT-GGATAAT-TTG--TTA-ATCGTAA--A--CAA-CTTTT-ATCTTATT--AATG-TTCATTTA-TTGTTGTGGG-----GTG--ATGA-ATCTCT-T---CC---TGAGGATG-AC-AATA-TG-AAACTTTTTGCTATTG-TTCAGAAATA--CATA--CGCGATA--CT-G--GTCG---TTTTA---A-TTTTTT-AT----TTT----------AATTTTGCTC--------------ANTGCT-------AATATNA---AA-----TGTA---A-A-TGATAGATAT-------------T---A-TGAT-GA---------TTTT------C-----TG---------TTT-----CA---CACT------T-ACGAAT---A-------------TT-------------G---TA-----------AA-TGTATGGCNC-GT--AT-GNTTGTA--CA-TTATT
gi|1 : TAG-AAATGTAAG----GACTCTTCGAGAT-GGGTAAT-TTGATTTA-ATCGTAG--AACCAA-CTTTT-CTTCTTTT--AATGCTTCATTTAATTATTGTGGGCAGAGGTGCTATGA-ATCTCT-T---CCCCTTGAGGATGAAC-AATACTG-AAACTTTT-----TTA-CTC---GAT-----TA--TGCGATA--CT-G--GTCGTCCTTTTACATA-TTTTTT-AT----TCT----------CATTTTGCTC--------------AATGCTAAATTAGAATATTA---AGGATCTTGTAC--A-ATTGATGGAT-C-------------T---ATTGATCGAGTC------TTTC------C-----TG---------TTG-----CAGTTCACTGCATAGT-ACGAATATGA-------------TT-------------G---TA-----------ACTTGTATA---------AT-GTTTGCA--CA--TATT
gi|11 : ----------AATTTTTC-C--------------AATGCT-------A-TATAA---AA-----TGTA---ATA-TGA-GGGTAT-------------T---A-TGAT-GA---------TTA-------C-----TG---------TTT------A---CACT------T-ACGAAT---A-------------TT-----------------CA-----------AT-TG-GTAACTT-GTAGAT-GTTTGTA--CA-TTActaagggacaggggaaaaatctaagttttggaatttgtatccaatcctctcgtcagtttaggcaatgaatttgttacaaatgtaaaacc
gi|12 : -GGATAATATTG--T-A-ATGGTAAGAA--CAAACTTTT-ATCTTAATCAAATG-TT--TTTA-TTGTAGTGAG-----GTGG-ATGATATCTCT-T---CT---TGAGGAT--ACGAATA-TG-AAACTTTTTACT-TTG-TTCAGAAATA--CATATGCACAACA--CTGG--GTCG---TTTTA---A-gtttaaggagaggattatctaagtttggaacttgtatcaaatctttttgga
gi|13 : TGGG-----GTG--ATGA-ATCTCT-T---CC---TGAGGATG-AC-TATA-TG-AAACTTTTTG-------TTCAGAAATA--CATA--TGCGATA--CT-G--GTCG---TTTCA---A-TTTTTTTAT----TCT----------AATTTTGCTC--------------AAAGCT-------GATATAA---GA-----TGTA---A-A-TGATAGATAT-------------T---A-TGAT-GA---------TTTT------
gi|14 : T----------AACCCTGCTT--------------GATGCT-------AACATCA---AA-----CGTA---A-A-TGATAGATAT-------------G---A-TGAT-GA---------ATTT------C-----TG---------CGT-----CA---CACT------T-ACGAAT---A-------------TTCGATTGATAACTTG---TA-----------AA-CGTATGGCAC-ATA-AT-GGCTGTA--CA-TGATT
gi|16 : gATA--TATA--CGTGATA--CT-G--GTTG---TTCCC---A-TTTTTT-AT----TTG----------AATTTTGCTC--------------ATTGCT-------AATA-AA---AA-----TATA---A-A-TGATAGCTAT-------------T---A-TGAT-GA---------TTTT------------TG---------TTT-----CA---CACT------T-ACGAAT---A-------------T------------------TA-----------AA-Tta
gi|17 : c-GGATAAT-TTA--TTA-ATCGTGA--A--CAA-CTTTT-ATCTTATT--GATG-TTCATTTA-TTGTTTTGGG-----GAG--ATGG-ATCTCT-T---CC---TAAGGATG-AC-AATA--G-AAAATTGTTACTATTG-TTCAGAA
gi|18 : TTTTTCGTGTGTGCTTGTGC-TGATAGATATAGAAAA---AAGCACAGA--TTCTGTGTTCGGATAAT-TTGC-TTAGATGGTAA--A--CAAGCTTGTAATCTTATTACAATG-CT
gi|19 : TATAC---AA-----TGTA---A-A-TGATAGATAT-------------T---A-TGATCGAC--------TTTT------CTGTCTTG---------TCT-----CA----ACT------TAATGGTT---AAC-----------TT-------------G---TA-----------AA-TGTATGGCACAAT--ATGGATTGTA--CA-TTATT
gi|2 : tGATGAT-TTA--TTT-ATTGTGA--A--CAA-TTTTT-GTCTTATT--TACG-TTCACTTA-TTATTTTGAG-----GTG--ATGG-ATCTGT-T---TC---TGAATAAG-AC-AATA-TG-AAGCTTTTTGTTATTG-ATCAGAAATG--CATA--CGTGATA--CT-G--GTCG---TTTT-----------T-AT----TTT-----------ATTTCTCTCCAAGTTAATGTACAAGTGTT-------GAAGTGAAACAA-----TGTA---A-G-CGATAGACAT-------------TATAA-TGAT-GA---------TTTT------C-----CG---------TCTTTTCCCA---CACT------T-ATTAAT---A-------------TC-----------------TA-----------AA-TG-GTCACCT-GT--AT--ATTGTATGCC-TTATt
gi|20 : TA---A-A-TGATAGATAT-------------T---A-TGAT-GA---------TTTT------C-----TGGGTTTTTTTTTT-----CA---CATG------T-AGGGAT---A-------------TT-------------T---TA-----------AA-TGgcgactgtatatcatttaattaaaggagaagagtatttaagttttggaacttgtattcattccttttgcctaattggcaatgagatgtgt
gi|22 : TTA-TTGTAGTGGG-----GTA--ATGA-ATCTCT-T---CT---TGAGGATA-AC-AATA-TG-AAACTTTTTACTATTG-TTCAGAAATA--CATA--TGCAACA--CT-G--GTCG---TTTTA---aggggataatctacgttttggaacttgtatccaa
gi|23 : TGGG-----TTG--ATGA-ATTTCT-T---CC---TGAGGATA-AC-AATA-TGGAAACATTTTACTATTG-TTCAGAAATA--CATA--CGCGAAA--CT-GCTGTCG---TTTAA---A-
gi|25 : attatTT----------AATTTTGCTC--------------AATGCT-------AAC-T-----AG-----TATA---A-A-T---AGCTAT-------------A---A-TGAT-GA---------TTTT------C-----TT---------TTT-----TA---CACT------T-ACGAGT---A-------------TT-----------------CA-----------AA-TG
gi|27 : CTC--------------ATTGCT-------AATATAA---AA-----TGTA---A-A-TGATAGGTAT-------------T---A-TGAT-GA---------TTTT------C-----TG---------TTT-----CA---CA
gi|28 : ATA--CATA--AGCAATGTTCT-G--GTTG---TTTTA---A-TTTCTG-GT----TCT----------AATTTTGCTC--------------ATTGCT-------AATATAC---AA-----TATA---A-A-tgaatgtcaatttcggcaa
gi|29 : CAGGAAGACACTTATCATTTTTTGTGTGTGTGTGTG----ATAGATATAG-AAA---AAGCA-AGATTTa
gi|3 : CAGGAAGACACTTAT--TTCTTTGTGTGTGTGTGTGCGTGATAGATATAG-AAA---T-GCA-AGACTTTCGATGAT-GGATAAT-TTG--TTA-ATCGTAA--A--CAA-CTTTT-ATCT-ATT--AATG-TTCATTTA-TTATTGTGGG-----GTG--ATGA-ATCTCT-T---CC---TGAGAATG-AC-AATA-TG-AAACTTTTTACTATTG-TTCAAAAATA--CATA--CGCGATA--CT-G--GTTG---TTTCA---AATTTTTT-AT----TTT----------AATTTTGCTC--------------ATTGCT-------AATATTA---AT-----TATA---A-A-TGATCGATAT-------------T---A-TAAT-GG---------TTTT------C-----TG---------TTT-----CA---CACT------T-ACGAAT---A-------------TT-------------G---TA-----------AA-TGTATGGCTC-AT--AT-GTTTGTA--CA-TTATT
gi|30 : ttctagtccaaattgtgaatgtggtctt-AC-AATG-TG-AAACTTTTTGC-ATAG----AGAAATA--C------GCAATA--CT-G--GTAG---TTTTA---A-TTTTT
gi|4 : -ATCTCTAT---CA---TAAG-AGG-AG-GATG-TG-AAGCTTCTTGTTATTG-GTCGGGAAAA--CACA--CGTGATA--CT-G--GTCG---TTTGA------------AT----TCT----------AATTATGC-----------------------------AA---AG---AA-----TGTA---A-G-CGATATATAT-------------T---G-TGAT-AACTTCATACTTTTT------C-----TGTCTT-----TCT-----CA---CACT------T-ATGAAT---A-------------TT-------------GAAATAGTCATTTATACAA-TGTATGACAT-AT--GT-TATTGTA--AA-
gi|5 : cC---TGAGGAGA-GC-AGTA-TG-AATCTTTTTGTTATTG-CTCAGAAATA--CATA--CGTGATA--CT-G--GTCG---TTTTA------TTTTT-AT----TTTG---------AATTTT-CTC--------------AGTG-T-------AACATAC---AA-----TATA---A-A-CGATAGATACGTGTACTACTGAGT---A-TGAT-GA---------TTTTTCTGTCT-----TG---------TCT-----CA---CACT------T-ACAAAT---A-------------TTCAATTGGCAACTCG---TA-----------AT-TGAATTGCAC-AT--GT-GATTGTA--CA-gcatatctttaaaagagaggattatctcagttttggaacttgcacccaaccgcaattggcaataaaatatgttcaaagcctatcaaatcaaatcatcgttattgatatgtttttagtcattcaca
gi|6 : tgtttggcgtctttaataaatT----------AATTTTGCCC--------------AATGCT-------AATATAA---AA-----TGTA---A-A-TGATGGGTAT-------------T---A-TGAT-GA---------TTTA------C-----TG---------TTT-----CA---CACT------T-ACGAAT---A-------------TT-----------------CA-----------AT-TG-GTAACTT-GTAGAT-GTTTGTA--CA-TTAgggttatctaagttttggatcttgtatccaatccctttggcaataaat
gi|7 : TT-AACTTATT--AATG-TTAATTTA-TTATCTTAGG-----GTG--ATGA-ATCTCT-T---CC---GAAGGATG-AA-AATA-TG-AAACTTTTAACTACTGTTTCAGAAATA--CATG--AGCGATA--CT-G--GTCG---TTTTA---A-TTTTTT-ATGTTATTTTTTTTATTCGAATTGTGCTC--------------ATTGCT-------AATATAA---AA-----CGTC---A-A-TAATAGATAT-------------T---A-TAAT-gtttaaggagaggattatctaagttttggaacttgtatcaaatctttttgggaagaaaatacatgcatgttcaaatcaacatacactgtcgagtttttaatgttttatat
gi|8 : tactgattttgaaaccTTTGCTC--------------AATGCT-------AATATGA---AA-----TGTATAAA-A-TGATAGATAT-------------T---A-TGAT-GA---------TTTT------CTGTTTTG---------TTT-----CA---CACT------T-ACGAAT---ATTCAATTGGTAACTT-------------G---TA-----------AA-TGTATGGCTC-AT--TT-GTTTGTA--CATTTATT
gi|9 : TG--ATGA-GTTTAT-TGATTG---TGAGTAGG-AA-TACA-CC-AAGCGTTTTGTTACTG-CTCAGAAGTAATCATA--TA--ATA--CT-G--GTTG---TTTCG---A-TTTTtaaaggagaggattatctaagttttggaacttatatccgatcttttt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTCTTTTTTCACAGTTGGGAACATCTAAATGGCCAAATACACAGTGTATGACAAGTGTGATTGTAAAATATATGTGTATTATATAAAGCAGAGGATTATCTAAGTTTTGTAACTTGCATTAAATCTTTTTTTCTAAATGACTCTAAAATATGTCG
Unaligned ( gi|15 ): TGTAACTATTGTATTTTATTGCAAAAATTGACAAAAGGATTGGATTAATTTATTTTTGAAACTTTTATTCAATCCTTTTGTCAATTTTGGCTATGAAATATGTTCAAATCAAATAAAAACT
Unaligned ( gi|21 ): CACACTAACGCATATTCAATTGGTATCTTGTTAAAATATGGCATATATGTTTGTATGTTATTTAATAAGATTATTTTCGTCCGATGTTTTTGTAA
Unaligned ( gi|24 ): AATATTTAAAGGAGAGGATTATATAAGTTTGTGAAACTCCTTGTGTCTTATTTGGCAATAAAATATGTTCAAATCAAAT
Unaligned ( gi|26 ): AAAAAGAGAGGGTTATCTAAGTTTTGAAACTTGCGTCCTATCCTCTTGTCCTTTTTGGCAATACATATTGTTCAAA
Alignments
lowQualScore : 11 1111 1 11111 1 11 1 11 11111 2222222222222222222222 1111111111111 111111111 111111111111 111111111 11111 666666666666666666666666666666666666666666 1111111
lowQualScore : 88 0 0 7777 0 88888 2 0 6 3 8 6 55 6 1 99999 3 5 55 5 2 5 11 11111 99 3 3 666 555 3 3 3 3 11 55 33 33 33 2 33 555 55555 4 2222222222222222222222 33 0 2 1 8888888 444 66666 666 2 2 3333333333333 444 2 5 888888888 666666666666 111111111 33333 555 888888 3 555 888888888888888888888888888888888888888888 3 3 8 1 5555555 4 1 55 4
lowQualScore : .. . . .... . ..... . . . . . . .. . . ..... . . .. . . . .. ..... .. . . ... ... . . . . .. .. .. .. .. . .. ... ..... . ...................... .. . . . ....... ... ..... ... . . ............. ... . . ......... ............ ......... ..... ... ...... . ... .......................................... . . . . ....... . . .. .
lowQualScore : 00 7 7 3333 0 22222 5 0 5 7 0 7 88 7 0 33333 3 7 77 7 5 7 33 11111 55 6 6 444 888 1 1 1 1 99 22 99 99 99 9 99 000 11111 4 1111111111111111111111 99 3 7 9 1111111 444 22222 555 4 5 8888888888888 444 5 0 000000000 777777777777 444444444 22222 000 888888 1 444 111111111111111111111111111111111111111111 1 1 3 4 8888888 0 0 55 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGAAGACACTTATCATTTTTCGTGTGTGCGTGTGC-TGATAGATATAG-AAA---AAGCA-AGACTTTCCGTGAT-GGATAAT-TTG--TTA-ATCGTAA--A--CAA-CTTTT-ATCTTATT--AATG-TTCATTTA-TTGTTGTGGG-----GTG--ATGA-ATCTCT-T---CC---TGAGGATGA-C-AATA-TG-AAACTTTTTGCTATTG-TTCAGAAATA--CATA--CGCGATA--CT-G--GTCGT---TTT-A---ATTTTTT-AT----TT-----T----------AATTT--TGCTC-ANTGCTAA-------TATAA---AA-----TGTA---A-AT-GATAGATAT-------------T---AT-GAT-GA---------TTTT------C-----TG---------TTT-----CA---CACT------T-ACGAAT---A-------------TT-------------G-------------TA-AA-TGTATGGCNC-GT--AT-GNTTGTA--CA-TTATT
Reference ( family-3104 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGAAGACACTTATCATTTTTCGTGTGTGCGTGTGC-TGATAGATATAG-AAA---AAGCA-AGACTTTCCGTGAT-GGATAAT-TTG--TTA-ATCGTAA--A--CAA-CTTTT-ATCTTATT--AATG-TTCATTTA-TTGTTGTGGG-----GTG--ATGA-ATCTCT-T---CC---TGAGGATGA-C-AATA-TG-AAACTTTTTGCTATTG-TTCAGAAATA--CATA--CGCGATA--CT-G--GTCGT---TTT-A---ATTTTTT-AT----TT-----T----------AATTT--TGCTC-ANTGCTAA-------TATAA---AA-----TGTA---A-AT-GATAGATAT-------------T---AT-GAT-GA---------TTTT------C-----TG---------TTT-----CA---CACT------T-ACGAAT---A-------------TT-------------G-------------TA-AA-TGTATGGCNC-GT--AT-GNTTGTA--CA-TTATT
gi|1 : TAG-AAATGTAAG----GACTCTTCGAGAT-GGGTAAT-TTGATTTA-ATCGTAG--AACCAA-CTTTT-CTTCTTTT--AATGCTTCATTTAATTATTGTGGGCAGAGGTGCTATGA-ATCTCT-T---CCCCTTGAGGATGAAC-AATACTG-AAACTTTTT-----TA-CTCG---AT-----TA--TGCGATA--CT-G--GTCGTCCTTTT-ACATATTTTTT-AT----TC-----T----------CATTT--TGCTC-AATGCTAAATTAGAATATTA---AGGATCTTGTAC--A-ATTGATGGAT-C-------------T---ATTGATCGAGTC------TTTC------C-----TG---------TTG-----CAGTTCACTGCATAGT-ACGAATATGA-------------TT-------------G-------------TA-ACTTGTATA---------AT-GTTTGCA--CA--TATT
gi|11 : ----------AATTT--TTC-C-AATGCTA--------TATAA---AA-----TGTA---ATAT-GA-GGGTAT-------------T---AT-GAT-GA----------TTA------C-----TG---------TTT------A---CACT------T-ACGAAT---A-------------TT---------------------------CA-AT-TG-GTAACTT-GTAGAT-GTTTGTA--CA-TTActaagggacaggggaaaaatctaagttttggaatttgtatccaatcctctcgtcagtttaggcaatgaatttgttacaaatgtaaaacc
gi|12 : -GGATAATATTG--T-A-ATGGTAAGAA--CAAACTTTT-ATCTTAATCAAATG-TT--TTTA-TTGTAGTGAG-----GTGG-ATGATATCTCT-T---CT---TGAGGAT-A-CGAATA-TG-AAACTTTTTACT-TTG-TTCAGAAATA--CATATGCACAACA--CTGG--GTCGT---TTT-A---Agtttaaggagaggattatctaagtttggaacttgtatcaaatctttttgga
gi|13 : TGGG-----GTG--ATGA-ATCTCT-T---CC---TGAGGATGA-C-TATA-TG-AAACTTTTTG-------TTCAGAAATA--CATA--TGCGATA--CT-G--GTCGT---TTC-A---ATTTTTTTAT----TC-----T----------AATTT--TGCTC-AAAGCTGA-------TATAA---GA-----TGTA---A-AT-GATAGATAT-------------T---AT-GAT-GA---------TTTT------
gi|14 : -----T----------AACCC--TGCTT-GATGCTAA-------CATCA---AA-----CGTA---A-AT-GATAGATAT-------------G---AT-GAT-GA---------ATTT------C-----TG---------CGT-----CA---CACT------T-ACGAAT---A-------------TTCGATTGATAACTTG-------------TA-AA-CGTATGGCAC-ATA-AT-GGCTGTA--CA-TGATT
gi|16 : gATA--TATA--CGTGATA--CT-G--GTTGT---TCC-C---ATTTTTT-AT----TT-----G----------AATTT--TGCTC-ATTGCTAA-------TA-AA---AA-----TATA---A-AT-GATAGCTAT-------------T---AT-GAT-GA---------TTTT------------TG---------TTT-----CA---CACT------T-ACGAAT---A-------------T----------------------------TA-AA-Tta
gi|17 : c-GGATAAT-TTA--TTA-ATCGTGA--A--CAA-CTTTT-ATCTTATT--GATG-TTCATTTA-TTGTTTTGGG-----GAG--ATGG-ATCTCT-T---CC---TAAGGATGA-C-AATA--G-AAAATTGTTACTATTG-TTCAGAA
gi|18 : TTTTTCGTGTGTGCTTGTGC-TGATAGATATAGAAAA---AAGCACAGA--TTCTGTGTTCGGATAAT-TTGC-TTAGATGGTAA--A--CAAGCTTGTAATCTTATTACAATG-CT
gi|19 : -------TATAC---AA-----TGTA---A-AT-GATAGATAT-------------T---AT-GATCGAC--------TTTT------CTGTCTTG---------TCT-----CA----ACT------TAATGGTT---AAC-----------TT-------------G-------------TA-AA-TGTATGGCACAAT--ATGGATTGTA--CA-TTATT
gi|2 : tGATGAT-TTA--TTT-ATTGTGA--A--CAA-TTTTT-GTCTTATT--TACG-TTCACTTA-TTATTTTGAG-----GTG--ATGG-ATCTGT-T---TC---TGAATAAGA-C-AATA-TG-AAGCTTTTTGTTATTG-ATCAGAAATG--CATA--CGTGATA--CT-G--GTCGT---TTT------TATTTT-AT----TTCTCTCC----------AAGTTAATGTACAAGTGTTGA-------AGTGAAACAA-----TGTA---A-GC-GATAGACAT-------------TATAAT-GAT-GA---------TTTT------C-----CG---------TCTTTTCCCA---CACT------T-ATTAAT---A-------------TC---------------------------TA-AA-TG-GTCACCT-GT--AT--ATTGTATGCC-TTATt
gi|20 : TA---A-AT-GATAGATAT-------------T---AT-GAT-GA---------TTTT------C-----TGGGTTTTTTTTTT-----CA---CATG------T-AGGGAT---A-------------TT-------------T-------------TA-AA-TGgcgactgtatatcatttaattaaaggagaagagtatttaagttttggaacttgtattcattccttttgcctaattggcaatgagatgtgt
gi|22 : TTA-TTGTAGTGGG-----GTA--ATGA-ATCTCT-T---CT---TGAGGATAA-C-AATA-TG-AAACTTTTTACTATTG-TTCAGAAATA--CATA--TGCAACA--CT-G--GTCGT---TTT-A---aggggataatctacgttttggaacttgtatccaa
gi|23 : TGGG-----TTG--ATGA-ATTTCT-T---CC---TGAGGATAA-C-AATA-TGGAAACATTTTACTATTG-TTCAGAAATA--CATA--CGCGAAA--CT-GCTGTCGT---TTA-A---A
gi|25 : attatT-----T----------AATTT--TGCTC-AATGCTAA-------C-TAG----------TATA---A-AT----AGCTAT-------------A---AT-GAT-GA---------TTTT------C-----TT---------TTT-----TA---CACT------T-ACGAGT---A-------------TT---------------------------CA-AA-TG
gi|27 : CTC-ATTGCTAA-------TATAA---AA-----TGTA---A-AT-GATAGGTAT-------------T---AT-GAT-GA---------TTTT------C-----TG---------TTT-----CA---CA
gi|28 : ATA--CATA--AGCAATGTTCT-G--GTTGT---TTT-A---ATTTCTG-GT----TC-----T----------AATTT--TGCTC-ATTGCTAA-------TATAC---AA-----TATA---A-Atgaatgtcaatttcggcaa
gi|29 : CAGGAAGACACTTATCATTTTTTGTGTGTGTGTG----TGATAGATATAG-AAA---AAGCA-AGATTTa
gi|3 : CAGGAAGACACTTAT--TTCTTTGTGTGTGTGTGTGCGTGATAGATATAG-AAA---T-GCA-AGACTTTCGATGAT-GGATAAT-TTG--TTA-ATCGTAA--A--CAA-CTTTT-ATCT-ATT--AATG-TTCATTTA-TTATTGTGGG-----GTG--ATGA-ATCTCT-T---CC---TGAGAATGA-C-AATA-TG-AAACTTTTTACTATTG-TTCAAAAATA--CATA--CGCGATA--CT-G--GTTGT---TTCAA---ATTTTTT-AT----TT-----T----------AATTT--TGCTC-ATTGCTAA-------TATTA---AT-----TATA---A-AT-GATCGATAT-------------T---AT-AAT-GG---------TTTT------C-----TG---------TTT-----CA---CACT------T-ACGAAT---A-------------TT-------------G-------------TA-AA-TGTATGGCTC-AT--AT-GTTTGTA--CA-TTATT
gi|30 : ttctagtccaaattgtgaatgtggtcttA-C-AATG-TG-AAACTTTTTGC-ATAG----AGAAATA--C------GCAATA--CT-G--GTAGT---TTT-A---ATTTTT
gi|4 : -ATCTCTAT---CA---TAAG-AGGA-G-GATG-TG-AAGCTTCTTGTTATTG-GTCGGGAAAA--CACA--CGTGATA--CT-G--GTCGT---TTG-A---ATTCT---------------------------AATTA--TGC---------AA----------AG---AA-----TGTA---A-GC-GATATATAT-------------T---GT-GAT-AACTTCATACTTTTT------C-----TG---------TCTTTCT-CA---CACT------T-ATGAAT---A-------------TT-------------GAAATAGTCATTTATACAA-TGTATGACAT-AT--GT-TATTGTA--AA-
gi|5 : cC---TGAGGAGAG-C-AGTA-TG-AATCTTTTTGTTATTG-CTCAGAAATA--CATA--CGTGATA--CT-G--GTCGT---TTT-A-----TTTTT-AT----TT-----TG---------AATTT--T-CTC-AGTG-TAA-------CATAC---AA-----TATA---A-AC-GATAGATACGTGTACTACTGAGT---AT-GAT-GA---------TTTTTCTGTCT-----TG---------TCT-----CA---CACT------T-ACAAAT---A-------------TTCAATTGGCAACTCG-------------TA-AT-TGAATTGCAC-AT--GT-GATTGTA--CA-gcatatctttaaaagagaggattatctcagttttggaacttgcacccaaccgcaattggcaataaaatatgttcaaagcctatcaaatcaaatcatcgttattgatatgtttttagtcattcaca
gi|6 : tgtttggcgtctttaataaat-----T----------AATTT--TGCCC-AATGCTAA-------TATAA---AA-----TGTA---A-AT-GATGGGTAT-------------T---AT-GAT-GA---------TTTA------C-----TG---------TTT-----CA---CACT------T-ACGAAT---A-------------TT---------------------------CA-AT-TG-GTAACTT-GTAGAT-GTTTGTA--CA-TTAgggttatctaagttttggatcttgtatccaatccctttggcaataaat
gi|7 : TT-AACTTATT--AATG-TTAATTTA-TTATCTTAGG-----GTG--ATGA-ATCTCT-T---CC---GAAGGATGA-A-AATA-TG-AAACTTTTAACTACTGTTTCAGAAATA--CATG--AGCGATA--CT-G--GTCGT---TTT-A---ATTTTTT-ATGTTATT-----TTTTTTATTCGAATTG--TGCTC-ATTGCTAA-------TATAA---AA-----CGTC---A-AT-AATAGATAT-------------T---AT-AAT-gtttaaggagaggattatctaagttttggaacttgtatcaaatctttttgggaagaaaatacatgcatgttcaaatcaacatacactgtcgagtttttaatgttttatat
gi|8 : tactgattttgaaaccTT--TGCTC-AATGCTAA-------TATGA---AA-----TGTATAAA-AT-GATAGATAT-------------T---AT-GAT-GA---------TTTT------CTGTTTTG---------TTT-----CA---CACT------T-ACGAAT---ATTCAATTGGTAACTT-------------G-------------TA-AA-TGTATGGCTC-AT--TT-GTTTGTA--CATTTATT
gi|9 : TG--ATGA-GTTTAT-TGATTG---TGAGTAGGA-A-TACA-CC-AAGCGTTTTGTTACTG-CTCAGAAGTAATCATA--TA--ATA--CT-G--GTTGT---TTC-G---ATTTTtaaaggagaggattatctaagttttggaacttatatccgatcttttt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTCTTTTTTCACAGTTGGGAACATCTAAATGGCCAAATACACAGTGTATGACAAGTGTGATTGTAAAATATATGTGTATTATATAAAGCAGAGGATTATCTAAGTTTTGTAACTTGCATTAAATCTTTTTTTCTAAATGACTCTAAAATATGTCG
Unaligned ( gi|15 ): TGTAACTATTGTATTTTATTGCAAAAATTGACAAAAGGATTGGATTAATTTATTTTTGAAACTTTTATTCAATCCTTTTGTCAATTTTGGCTATGAAATATGTTCAAATCAAATAAAAACT
Unaligned ( gi|21 ): CACACTAACGCATATTCAATTGGTATCTTGTTAAAATATGGCATATATGTTTGTATGTTATTTAATAAGATTATTTTCGTCCGATGTTTTTGTAA
Unaligned ( gi|24 ): AATATTTAAAGGAGAGGATTATATAAGTTTGTGAAACTCCTTGTGTCTTATTTGGCAATAAAATATGTTCAAATCAAAT
Unaligned ( gi|26 ): AAAAAGAGAGGGTTATCTAAGTTTTGAAACTTGCGTCCTATCCTCTTGTCCTTTTTGGCAATACATATTGTTCAAA
Alignments
lowQualScore : 11 1111 1 11111 1 11 1 11 11111 2222222222222222222222 1111111111111 111111111 111111111111 111111111 11111 666666666666666666666666666666666666666666 1111111
lowQualScore : 88 0 0 7777 0 88888 2 0 6 3 8 6 55 6 1 99999 3 5 55 5 2 5 11 11111 99 3 3 666 555 3 3 3 3 11 55 33 33 33 2 33 555 55555 4 2222222222222222222222 33 0 2 1 8888888 444 66666 666 2 2 3333333333333 444 2 5 888888888 666666666666 111111111 33333 555 888888 3 555 888888888888888888888888888888888888888888 3 3 8 1 5555555 4 1 55 4
lowQualScore : .. . . .... . ..... . . . . . . .. . . ..... . . .. . . . .. ..... .. . . ... ... . . . . .. .. .. .. .. . .. ... ..... . ...................... .. . . . ....... ... ..... ... . . ............. ... . . ......... ............ ......... ..... ... ...... . ... .......................................... . . . . ....... . . .. .
lowQualScore : 00 7 7 3333 0 22222 5 0 5 7 0 7 88 7 0 33333 3 7 77 7 5 7 33 11111 55 6 6 444 888 1 1 1 1 99 22 99 99 99 9 99 000 11111 4 1111111111111111111111 99 3 7 9 1111111 444 22222 555 4 5 8888888888888 444 5 0 000000000 777777777777 444444444 22222 000 888888 1 444 111111111111111111111111111111111111111111 1 1 3 4 8888888 0 0 55 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGAAGACACTTATCATTTTTCGTGTGTGCGTGTGC-TGATAGATATAG-AAA---AAGCA-AGACTTTCCGTGAT-GGATAAT-TTG--TTA-ATCGTAA--A--CAA-CTTTT-ATCTTATT--AATG-TTCATTTA-TTGTTGTGGG-----GTG--ATGA-ATCTCT-T---CC---TGAGGATGA-C-AATA-TG-AAACTTTTTGCTATTG-TTCAGAAATA--CATA--CGCGATA--CT-G--GTCGT---TTT-A---ATTTTTT-AT----TT-----T----------AATTT--TGCTC-ANTGCTAA-------TATAA---AA-----TGTA---A-AT-GATAGATAT-------------T---AT-GAT-GA---------TTTT------C-----TG---------TTT-----CA---CACT------T-ACGAAT---A-------------TT-------------G-------------TA-AA-TGTATGGCNC-GT--AT-GNTTGTA--CA-TTATT
Reference ( family-3104 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGAAGACACTTATCATTTTTCGTGTGTGCGTGTGC-TGATAGATATAG-AAA---AAGCA-AGACTTTCCGTGAT-GGATAAT-TTG--TTA-ATCGTAA--A--CAA-CTTTT-ATCTTATT--AATG-TTCATTTA-TTGTTGTGGG-----GTG--ATGA-ATCTCT-T---CC---TGAGGATGA-C-AATA-TG-AAACTTTTTGCTATTG-TTCAGAAATA--CATA--CGCGATA--CT-G--GTCGT---TTT-A---ATTTTTT-AT----TT-----T----------AATTT--TGCTC-ANTGCTAA-------TATAA---AA-----TGTA---A-AT-GATAGATAT-------------T---AT-GAT-GA---------TTTT------C-----TG---------TTT-----CA---CACT------T-ACGAAT---A-------------TT-------------G-------------TA-AA-TGTATGGCNC-GT--AT-GNTTGTA--CA-TTATT
gi|1 : TAG-AAATGTAAG----GACTCTTCGAGAT-GGGTAAT-TTGATTTA-ATCGTAG--AACCAA-CTTTT-CTTCTTTT--AATGCTTCATTTAATTATTGTGGGCAGAGGTGCTATGA-ATCTCT-T---CCCCTTGAGGATGAAC-AATACTG-AAACTTTTT-----TA-CTCG---AT-----TA--TGCGATA--CT-G--GTCGTCCTTTT-ACATATTTTTT-AT----TC-----T----------CATTT--TGCTC-AATGCTAAATTAGAATATTA---AGGATCTTGTAC--A-ATTGATGGAT-C-------------T---ATTGATCGAGTC------TTTC------C-----TG---------TTG-----CAGTTCACTGCATAGT-ACGAATATGA-------------TT-------------G-------------TA-ACTTGTATA---------AT-GTTTGCA--CA--TATT
gi|11 : ----------AATTT--TTC-C-AATGCTA--------TATAA---AA-----TGTA---ATAT-GA-GGGTAT-------------T---AT-GAT-GA----------TTA------C-----TG---------TTT------A---CACT------T-ACGAAT---A-------------TT---------------------------CA-AT-TG-GTAACTT-GTAGAT-GTTTGTA--CA-TTActaagggacaggggaaaaatctaagttttggaatttgtatccaatcctctcgtcagtttaggcaatgaatttgttacaaatgtaaaacc
gi|12 : -GGATAATATTG--T-A-ATGGTAAGAA--CAAACTTTT-ATCTTAATCAAATG-TT--TTTA-TTGTAGTGAG-----GTGG-ATGATATCTCT-T---CT---TGAGGAT-A-CGAATA-TG-AAACTTTTTACT-TTG-TTCAGAAATA--CATATGCACAACA--CTGG--GTCGT---TTT-A---Agtttaaggagaggattatctaagtttggaacttgtatcaaatctttttgga
gi|13 : TGGG-----GTG--ATGA-ATCTCT-T---CC---TGAGGATGA-C-TATA-TG-AAACTTTTTG-------TTCAGAAATA--CATA--TGCGATA--CT-G--GTCGT---TTC-A---ATTTTTTTAT----TC-----T----------AATTT--TGCTC-AAAGCTGA-------TATAA---GA-----TGTA---A-AT-GATAGATAT-------------T---AT-GAT-GA---------TTTT------
gi|14 : -----T----------AACCC--TGCTT-GATGCTAA-------CATCA---AA-----CGTA---A-AT-GATAGATAT-------------G---AT-GAT-GA---------ATTT------C-----TG---------CGT-----CA---CACT------T-ACGAAT---A-------------TTCGATTGATAACTTG-------------TA-AA-CGTATGGCAC-ATA-AT-GGCTGTA--CA-TGATT
gi|16 : gATA--TATA--CGTGATA--CT-G--GTTGT---TCC-C---ATTTTTT-AT----TT-----G----------AATTT--TGCTC-ATTGCTAA-------TA-AA---AA-----TATA---A-AT-GATAGCTAT-------------T---AT-GAT-GA---------TTTT------------TG---------TTT-----CA---CACT------T-ACGAAT---A-------------T----------------------------TA-AA-Tta
gi|17 : c-GGATAAT-TTA--TTA-ATCGTGA--A--CAA-CTTTT-ATCTTATT--GATG-TTCATTTA-TTGTTTTGGG-----GAG--ATGG-ATCTCT-T---CC---TAAGGATGA-C-AATA--G-AAAATTGTTACTATTG-TTCAGAA
gi|18 : TTTTTCGTGTGTGCTTGTGC-TGATAGATATAGAAAA---AAGCACAGA--TTCTGTGTTCGGATAAT-TTGC-TTAGATGGTAA--A--CAAGCTTGTAATCTTATTACAATG-CT
gi|19 : -------TATAC---AA-----TGTA---A-AT-GATAGATAT-------------T---AT-GATCGAC--------TTTT------CTGTCTTG---------TCT-----CA----ACT------TAATGGTT---AAC-----------TT-------------G-------------TA-AA-TGTATGGCACAAT--ATGGATTGTA--CA-TTATT
gi|2 : tGATGAT-TTA--TTT-ATTGTGA--A--CAA-TTTTT-GTCTTATT--TACG-TTCACTTA-TTATTTTGAG-----GTG--ATGG-ATCTGT-T---TC---TGAATAAGA-C-AATA-TG-AAGCTTTTTGTTATTG-ATCAGAAATG--CATA--CGTGATA--CT-G--GTCGT---TTT------TATTTT-AT----TTCTCTCC----------AAGTTAATGTACAAGTGTTGA-------AGTGAAACAA-----TGTA---A-GC-GATAGACAT-------------TATAAT-GAT-GA---------TTTT------C-----CG---------TCTTTTCCCA---CACT------T-ATTAAT---A-------------TC---------------------------TA-AA-TG-GTCACCT-GT--AT--ATTGTATGCC-TTATt
gi|20 : TA---A-AT-GATAGATAT-------------T---AT-GAT-GA---------TTTT------C-----TGGGTTTTTTTTTT-----CA---CATG------T-AGGGAT---A-------------TT-------------T-------------TA-AA-TGgcgactgtatatcatttaattaaaggagaagagtatttaagttttggaacttgtattcattccttttgcctaattggcaatgagatgtgt
gi|22 : TTA-TTGTAGTGGG-----GTA--ATGA-ATCTCT-T---CT---TGAGGATAA-C-AATA-TG-AAACTTTTTACTATTG-TTCAGAAATA--CATA--TGCAACA--CT-G--GTCGT---TTT-A---aggggataatctacgttttggaacttgtatccaa
gi|23 : TGGG-----TTG--ATGA-ATTTCT-T---CC---TGAGGATAA-C-AATA-TGGAAACATTTTACTATTG-TTCAGAAATA--CATA--CGCGAAA--CT-GCTGTCGT---TTA-A---A
gi|25 : attatT-----T----------AATTT--TGCTC-AATGCTAA-------C-TAG----------TATA---A-AT----AGCTAT-------------A---AT-GAT-GA---------TTTT------C-----TT---------TTT-----TA---CACT------T-ACGAGT---A-------------TT---------------------------CA-AA-TG
gi|27 : CTC-ATTGCTAA-------TATAA---AA-----TGTA---A-AT-GATAGGTAT-------------T---AT-GAT-GA---------TTTT------C-----TG---------TTT-----CA---CA
gi|28 : ATA--CATA--AGCAATGTTCT-G--GTTGT---TTT-A---ATTTCTG-GT----TC-----T----------AATTT--TGCTC-ATTGCTAA-------TATAC---AA-----TATA---A-Atgaatgtcaatttcggcaa
gi|29 : CAGGAAGACACTTATCATTTTTTGTGTGTGTGTG----TGATAGATATAG-AAA---AAGCA-AGATTTa
gi|3 : CAGGAAGACACTTAT--TTCTTTGTGTGTGTGTGTGCGTGATAGATATAG-AAA---T-GCA-AGACTTTCGATGAT-GGATAAT-TTG--TTA-ATCGTAA--A--CAA-CTTTT-ATCT-ATT--AATG-TTCATTTA-TTATTGTGGG-----GTG--ATGA-ATCTCT-T---CC---TGAGAATGA-C-AATA-TG-AAACTTTTTACTATTG-TTCAAAAATA--CATA--CGCGATA--CT-G--GTTGT---TTCAA---ATTTTTT-AT----TT-----T----------AATTT--TGCTC-ATTGCTAA-------TATTA---AT-----TATA---A-AT-GATCGATAT-------------T---AT-AAT-GG---------TTTT------C-----TG---------TTT-----CA---CACT------T-ACGAAT---A-------------TT-------------G-------------TA-AA-TGTATGGCTC-AT--AT-GTTTGTA--CA-TTATT
gi|30 : ttctagtccaaattgtgaatgtggtcttA-C-AATG-TG-AAACTTTTTGC-ATAG----AGAAATA--C------GCAATA--CT-G--GTAGT---TTT-A---ATTTTT
gi|4 : -ATCTCTAT---CA---TAAG-AGGA-G-GATG-TG-AAGCTTCTTGTTATTG-GTCGGGAAAA--CACA--CGTGATA--CT-G--GTCGT---TTG-A---ATTCT---------------------------AATTA--TGC---------AA----------AG---AA-----TGTA---A-GC-GATATATAT-------------T---GT-GAT-AACTTCATACTTTTT------C-----TG---------TCTTTCT-CA---CACT------T-ATGAAT---A-------------TT-------------GAAATAGTCATTTATACAA-TGTATGACAT-AT--GT-TATTGTA--AA-
gi|5 : cC---TGAGGAGAG-C-AGTA-TG-AATCTTTTTGTTATTG-CTCAGAAATA--CATA--CGTGATA--CT-G--GTCGT---TTT-A-----TTTTT-AT----TT-----TG---------AATTT--T-CTC-AGTG-TAA-------CATAC---AA-----TATA---A-AC-GATAGATACGTGTACTACTGAGT---AT-GAT-GA---------TTTTTCTGTCT-----TG---------TCT-----CA---CACT------T-ACAAAT---A-------------TTCAATTGGCAACTCG-------------TA-AT-TGAATTGCAC-AT--GT-GATTGTA--CA-gcatatctttaaaagagaggattatctcagttttggaacttgcacccaaccgcaattggcaataaaatatgttcaaagcctatcaaatcaaatcatcgttattgatatgtttttagtcattcaca
gi|6 : tgtttggcgtctttaataaat-----T----------AATTT--TGCCC-AATGCTAA-------TATAA---AA-----TGTA---A-AT-GATGGGTAT-------------T---AT-GAT-GA---------TTTA------C-----TG---------TTT-----CA---CACT------T-ACGAAT---A-------------TT---------------------------CA-AT-TG-GTAACTT-GTAGAT-GTTTGTA--CA-TTAgggttatctaagttttggatcttgtatccaatccctttggcaataaat
gi|7 : TT-AACTTATT--AATG-TTAATTTA-TTATCTTAGG-----GTG--ATGA-ATCTCT-T---CC---GAAGGATGA-A-AATA-TG-AAACTTTTAACTACTGTTTCAGAAATA--CATG--AGCGATA--CT-G--GTCGT---TTT-A---ATTTTTT-ATGTTATT-----TTTTTTATTCGAATTG--TGCTC-ATTGCTAA-------TATAA---AA-----CGTC---A-AT-AATAGATAT-------------T---AT-AAT-gtttaaggagaggattatctaagttttggaacttgtatcaaatctttttgggaagaaaatacatgcatgttcaaatcaacatacactgtcgagtttttaatgttttatat
gi|8 : tactgattttgaaaccTT--TGCTC-AATGCTAA-------TATGA---AA-----TGTATAAA-AT-GATAGATAT-------------T---AT-GAT-GA---------TTTT------CTGTTTTG---------TTT-----CA---CACT------T-ACGAAT---ATTCAATTGGTAACTT-------------G-------------TA-AA-TGTATGGCTC-AT--TT-GTTTGTA--CATTTATT
gi|9 : TG--ATGA-GTTTAT-TGATTG---TGAGTAGGA-A-TACA-CC-AAGCGTTTTGTTACTG-CTCAGAAGTAATCATA--TA--ATA--CT-G--GTTGT---TTC-G---ATTTTtaaaggagaggattatctaagttttggaacttatatccgatcttttt
blockSeqs : . TGCG A AA C C T T C A C G G GAA A A CA . C . AG . G T A GAT . . G . G AC TT AT TG TT G CT . AA T GTTATTTTTTTTATTCG AA A A . AAC . TAA T . GTGTACTACTGAG ATA . C CTTCATACT TCTGTCT GGTTTTTTT TTTCC . . A . TTCGATTGATAACTTG C . T A TTGTAG G T TG T
blockSeqs : . . AA C . C G . . . . C A G . AC . C . TT . . . . . . . . . . AC T . . . . . . A . TTCTCTCC . . A . . . . . . . . . . C CTGTCT . TTCT . . . . TTGAAATAGTCATTTA . . T G TTGTAG . G . .
blockSeqs : . T C . . . . . . G A . . . . C . TT . . . . . . . . . . GT T . . . . . . A . TTTG . . A . . . . . . . . . . . CTGTTT . . . . . . TTCAATTGGCAACTCG . . T G ACATA . A . .
blockSeqs : . . . . T A . . . . A . AG . . . . . . . . . . AC T . . . . . . C . TCT . . T . . . . . . . . . . . C . . . . . . TTCAATTGGTAACTTG . . T A ACAAT . A . .
blockSeqs : . . . C A . . . . . . TG . . . . . . . . . . AC A . . . . . . A . TTG . . G . . . . . . . . . . . C . . . . . . ACTTG . . A G CTGT . T . .
blockSeqs : . . . . CT . . . . . . . . . . AC T . . . . . . A . TCT . . A . . . . . . . . . . . C . . . . . . TTT . . T A TCAT . A . .
blockSeqs : . . . . . . . . . . GC T . . . . . . A . TTT . . T . . . . . . . . . . . C . . . . . . TTG . . . G ATAT . A . .
blockSeqs : . . . . . . . . . . GT T . . . . . . A . . . . T . . . . . . . . . . . C . . . . . . TT . . . A ACAT . T . .
blockSeqs : . . . . . . . . . GT G . . . . . . A . . T . . . . . . . . . . . C . . . . . . TC . . . G TCAT . T . .
blockSeqs : . . . . . . . . AC C . . . . . . A . . G . . . . . . . . . . . C . . . . . . TT . .
blockSeqs : . . . . . GT C . . . . . . A . . A . . . . . . . . . . . C . . . . . . TT . .
blockSeqs : . . . . G . . . . . . . G . . T . . . . . . . . . . . C . . . . . . T . .
blockSeqs : . . . . . . . . . A . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . .
blockSeqCons : ** A**** ***** ** *** GC *** A**** ******* ***** *** ********* *** ****** *** TTG*************************************** NCAT***
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGAAGACACTTATCATTTTTCGTGTGTGCGTGTGC-TGATAGATATAG-AAA---AAGCA-AGACTTTCCGTGAT-GGATAAT-TTG--TTA-ATCGTAA--A--CAA-CTTTT-ATCTTATT--AATG-TTCATTTA-TTGTTGTGGG-----GTG--ATGA-ATCTCT-T---CC---TGAGGATGA-C-AATA-TG-AAACTTTTTGCTATTG-TTCAGAAATA--CATA--CGCGATA--CT-G--GTCGT---TTT-A---ATTTTTT-AT----TT-----T----------AATTT--TGCTC-ANTGCTAA-------TATAA---AA-----TGTA---A-AT-GATAGATAT-------------T---AT-GAT-GA---------TTTT------C-----TG---------TTT-----CA---CACT------T-ACGAAT---A-------------TT-------------G-------------TA-AA-TGTATGGCNC-GT--AT-GNTTGTA--CA-TTATT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGAAGACACTTATCATTTTTCGTGTGTGCGTGTGC-TGATAGATATAG-AAA---AAGCA-AGACTTTCCGTGAT-GGATAAT-TTG--TTA-ATCGTAAA----CAA-CTTTT-ATCTTATT--AATG-TTCATTTA-TTGTTGTGGG-----GTG--ATGA-ATCTCT-T---CC---TGAGGATGA-C-AATA-TG-AAACTTTTTGCTATTG-TTCAGAAATA--CATA--CGCGATA--CT-G--GTCGT---TTTA----ATTTTTT-AT----TT-----T----------AATTT--TGCTC-ANTGCTAA-------TATAA---AA-----TGTA---A-AT-GATAGATAT-------------T---AT-GAT-GA---------TTTT------C-----TG---------TTT-----CA---CACT------T-ACGAAT---ATTG---------------------------------------TA-AA-TGTATGGCNCAT---AT-GNTTGTA--CA-TTATT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTCTTTTTTCACAGTTGGGAACATCTAAATGGCCAAATACACAGTGTATGACAAGTGTGATTGTAAAATATATGTGTATTATATAAAGCAGAGGATTATCTAAGTTTTGTAACTTGCATTAAATCTTTTTTTCTAAATGACTCTAAAATATGTCG
Unaligned ( gi|15 ): TGTAACTATTGTATTTTATTGCAAAAATTGACAAAAGGATTGGATTAATTTATTTTTGAAACTTTTATTCAATCCTTTTGTCAATTTTGGCTATGAAATATGTTCAAATCAAATAAAAACT
Unaligned ( gi|21 ): CACACTAACGCATATTCAATTGGTATCTTGTTAAAATATGGCATATATGTTTGTATGTTATTTAATAAGATTATTTTCGTCCGATGTTTTTGTAA
Unaligned ( gi|24 ): AATATTTAAAGGAGAGGATTATATAAGTTTGTGAAACTCCTTGTGTCTTATTTGGCAATAAAATATGTTCAAATCAAAT
Unaligned ( gi|26 ): AAAAAGAGAGGGTTATCTAAGTTTTGAAACTTGCGTCCTATCCTCTTGTCCTTTTTGGCAATACATATTGTTCAAA
Alignments
lowQualScore : 11 1111 1 11111 1 11 1 11 11111 2222222222222222222222 1111111111111 111111111 111111111111 111111111 11111 8888888888888888888888888888888888888888888888888888888 11
lowQualScore : 88 0 0 7777 0 88888 2 0 6 3 8 6 55 6 1 99999 3 5 55 5 2 5 11 11111 99 3 3 666 555 3 3 3 3 11 55 33 33 33 2 33 555 55555 4 2222222222222222222222 33 0 2 1 8888888 444 66666 666 2 2 3333333333333 444 2 5 888888888 666666666666 111111111 33333 555 888888 3 555 0000000000000000000000000000000000000000000000000000000 6 33 3 2 555 55 4 1 4
lowQualScore : .. . . .... . ..... . . . . . . .. . . ..... . . .. . . . .. ..... .. . . ... ... . . . . .. .. .. .. .. . .. ... ..... . ...................... .. . . . ....... ... ..... ... . . ............. ... . . ......... ............ ......... ..... ... ...... . ... ....................................................... . .. . . ... .. . . .
lowQualScore : 00 7 7 3333 0 22222 5 0 5 7 0 7 88 7 0 33333 3 7 77 7 5 7 33 11111 55 6 6 444 888 1 1 1 1 99 22 99 99 99 9 99 000 11111 4 1111111111111111111111 99 3 7 9 1111111 444 22222 555 4 5 8888888888888 444 5 0 000000000 777777777777 444444444 22222 000 888888 1 444 0000000000000000000000000000000000000000000000000000000 2 99 4 3 333 00 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGAAGACACTTATCATTTTTCGTGTGTGCGTGTGC-TGATAGATATAG-AAA---AAGCA-AGACTTTCCGTGAT-GGATAAT-TTG--TTA-ATCGTAA--A--CAA-CTTTT-ATCTTATT--AATG-TTCATTTA-TTGTTGTGGG-----GTG--ATGA-ATCTCT-T---CC---TGAGGATGA-C-AATA-TG-AAACTTTTTGCTATTG-TTCAGAAATA--CATA--CGCGATA--CT-G--GTCGT---TTT-A---ATTTTTT-AT----TT-----T----------AATTT--TGCTC-ANTGCTAA-------TATAA---AA-----TGTA---A-AT-GATAGATAT-------------T---AT-GAT-GA---------TTTT------C-----TG---------TTT-----CA---CACT------T-ACGAAT---A-------------T-------------T-------------G-------------TA-AA-TGTATGGCNC-AT--AT-GNTTGTACA-TTATT
Reference ( family-3104 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGAAGACACTTATCATTTTTCGTGTGTGCGTGTGC-TGATAGATATAG-AAA---AAGCA-AGACTTTCCGTGAT-GGATAAT-TTG--TTA-ATCGTAA--A--CAA-CTTTT-ATCTTATT--AATG-TTCATTTA-TTGTTGTGGG-----GTG--ATGA-ATCTCT-T---CC---TGAGGATGA-C-AATA-TG-AAACTTTTTGCTATTG-TTCAGAAATA--CATA--CGCGATA--CT-G--GTCGT---TTT-A---ATTTTTT-AT----TT-----T----------AATTT--TGCTC-ANTGCTAA-------TATAA---AA-----TGTA---A-AT-GATAGATAT-------------T---AT-GAT-GA---------TTTT------C-----TG---------TTT-----CA---CACT------T-ACGAAT---A-------------T-------------T-------------G-------------TA-AA-TGTATGGCNC-AT--AT-GNTTGTACA-TTATT
gi|1 : TAG-AAATGTAAG----GACTCTTCGAGAT-GGGTAAT-TTGATTTA-ATCGTAG--AACCAA-CTTTT-CTTCTTTT--AATGCTTCATTTAATTATTGTGGGCAGAGGTGCTATGA-ATCTCT-T---CCCCTTGAGGATGAAC-AATACTG-AAACTTTTT-----TA-CTCG---AT-----TA--TGCGATA--CT-G--GTCGTCCTTTT-ACATATTTTTT-AT----TC-----T----------CATTT--TGCTC-AATGCTAAATTAGAATATTA---AGGATCTTGTAC--A-ATTGATGGAT-C-------------T---ATTGATCGAGTC------TTTC------C-----TG---------TTG-----CAGTTCACTGCATAGT-ACGAATATGA-------------T-------------T-------------G-------------TA-ACTTGTATA---------AT-GTTTGCACA--TATT
gi|11 : ----------AATTT--TTC-C-AATGCTA--------TATAA---AA-----TGTA---ATAT-GA-GGGTAT-------------T---AT-GAT-GA----------TTA------C-----TG---------TTT------A---CACT------T-ACGAAT---A-------------T-------------T---------------------------CA-AT-TG-GTAACTT-GTAGAT-GTTTGTACA-TTActaagggacaggggaaaaatctaagttttggaatttgtatccaatcctctcgtcagtttaggcaatgaatttgttacaaatgtaaaacc
gi|12 : -GGATAATATTG--T-A-ATGGTAAGAA--CAAACTTTT-ATCTTAATCAAATG-TT--TTTA-TTGTAGTGAG-----GTGG-ATGATATCTCT-T---CT---TGAGGAT-A-CGAATA-TG-AAACTTTTTACT-TTG-TTCAGAAATA--CATATGCACAACA--CTGG--GTCGT---TTT-A---Agtttaaggagaggattatctaagtttggaacttgtatcaaatctttttgga
gi|13 : TGGG-----GTG--ATGA-ATCTCT-T---CC---TGAGGATGA-C-TATA-TG-AAACTTTTTG-------TTCAGAAATA--CATA--TGCGATA--CT-G--GTCGT---TTC-A---ATTTTTTTAT----TC-----T----------AATTT--TGCTC-AAAGCTGA-------TATAA---GA-----TGTA---A-AT-GATAGATAT-------------T---AT-GAT-GA---------TTTT------
gi|14 : -----T----------AACCC--TGCTT-GATGCTAA-------CATCA---AA-----CGTA---A-AT-GATAGATAT-------------G---AT-GAT-GA---------ATTT------C-----TG---------CGT-----CA---CACT------T-ACGAAT---A-------------T-------------TCGATTGATAACTTG-------------TA-AA-CGTATGGCAC-ATA-AT-GGCTGTACA-TGATT
gi|16 : gATA--TATA--CGTGATA--CT-G--GTTGT---TCC-C---ATTTTTT-AT----TT-----G----------AATTT--TGCTC-ATTGCTAA-------TA-AA---AA-----TATA---A-AT-GATAGCTAT-------------T---AT-GAT-GA---------TTTT------------TG---------TTT-----CA---CACT------T-ACGAAT---A-------------T-----------------------------------------TA-AA-Tta
gi|17 : c-GGATAAT-TTA--TTA-ATCGTGA--A--CAA-CTTTT-ATCTTATT--GATG-TTCATTTA-TTGTTTTGGG-----GAG--ATGG-ATCTCT-T---CC---TAAGGATGA-C-AATA--G-AAAATTGTTACTATTG-TTCAGAA
gi|18 : TTTTTCGTGTGTGCTTGTGC-TGATAGATATAGAAAA---AAGCACAGA--TTCTGTGTTCGGATAAT-TTGC-TTAGATGGTAA--A--CAAGCTTGTAATCTTATTACAATG-CT
gi|19 : -------TATAC---AA-----TGTA---A-AT-GATAGATAT-------------T---AT-GATCGAC--------TTTT------CTGTCTTG---------TCT-----CA----ACT------TAATGGTT---AAC-----------T-------------T-------------G-------------TA-AA-TGTATGGCACAAT--ATGGATTGTACA-TTATT
gi|2 : tGATGAT-TTA--TTT-ATTGTGA--A--CAA-TTTTT-GTCTTATT--TACG-TTCACTTA-TTATTTTGAG-----GTG--ATGG-ATCTGT-T---TC---TGAATAAGA-C-AATA-TG-AAGCTTTTTGTTATTG-ATCAGAAATG--CATA--CGTGATA--CT-G--GTCGT---TTT------TATTTT-AT----TTCTCTCC----------AAGTTAATGTACAAGTGTTGA-------AGTGAAACAA-----TGTA---A-GC-GATAGACAT-------------TATAAT-GAT-GA---------TTTT------C-----CG---------TCTTTTCCCA---CACT------T-ATTAAT---A-------------TCTAAATGGTCACCT-------------G-------------TATAT-TGTATGCCTT-AT--GC-GACTGTATA-TCATTt
gi|20 : TA---A-AT-GATAGATAT-------------T---AT-GAT-GA---------TTTT------C-----TGGGTTTTTTTTTT-----CA---CATG------T-AGGGAT---A-------------T-------------T-------------T-------------TA-AA-TGtaattaaaggagaagagtatttaagttttggaacttgtattcattccttttgcctaattggcaatgagatgtgt
gi|22 : TTA-TTGTAGTGGG-----GTA--ATGA-ATCTCT-T---CT---TGAGGATAA-C-AATA-TG-AAACTTTTTACTATTG-TTCAGAAATA--CATA--TGCAACA--CT-G--GTCGT---TTT-A---aggggataatctacgttttggaacttgtatccaa
gi|23 : TGGG-----TTG--ATGA-ATTTCT-T---CC---TGAGGATAA-C-AATA-TGGAAACATTTTACTATTG-TTCAGAAATA--CATA--CGCGAAA--CT-GCTGTCGT---TTA-A---A
gi|25 : attatT-----T----------AATTT--TGCTC-AATGCTAA-------C-TAG----------TATA---A-AT----AGCTAT-------------A---AT-GAT-GA---------TTTT------C-----TT---------TTT-----TA---CACT------T-ACGAGT---A-------------T-------------T---------------------------CA-AA-TG
gi|27 : CTC-ATTGCTAA-------TATAA---AA-----TGTA---A-AT-GATAGGTAT-------------T---AT-GAT-GA---------TTTT------C-----TG---------TTT-----CA---CA
gi|28 : ATA--CATA--AGCAATGTTCT-G--GTTGT---TTT-A---ATTTCTG-GT----TC-----T----------AATTT--TGCTC-ATTGCTAA-------TATAC---AA-----TATA---A-Atgaatgtcaatttcggcaa
gi|29 : CAGGAAGACACTTATCATTTTTTGTGTGTGTGTG----TGATAGATATAG-AAA---AAGCA-AGATTTa
gi|3 : CAGGAAGACACTTAT--TTCTTTGTGTGTGTGTGTGCGTGATAGATATAG-AAA---T-GCA-AGACTTTCGATGAT-GGATAAT-TTG--TTA-ATCGTAA--A--CAA-CTTTT-ATCT-ATT--AATG-TTCATTTA-TTATTGTGGG-----GTG--ATGA-ATCTCT-T---CC---TGAGAATGA-C-AATA-TG-AAACTTTTTACTATTG-TTCAAAAATA--CATA--CGCGATA--CT-G--GTTGT---TTCAA---ATTTTTT-AT----TT-----T----------AATTT--TGCTC-ATTGCTAA-------TATTA---AT-----TATA---A-AT-GATCGATAT-------------T---AT-AAT-GG---------TTTT------C-----TG---------TTT-----CA---CACT------T-ACGAAT---A-------------T-------------T-------------G-------------TA-AA-TGTATGGCTC-AT--AT-GTTTGTACA-TTATT
gi|30 : ttctagtccaaattgtgaatgtggtcttA-C-AATG-TG-AAACTTTTTGC-ATAG----AGAAATA--C------GCAATA--CT-G--GTAGT---TTT-A---ATTTTT
gi|4 : -ATCTCTAT---CA---TAAG-AGGA-G-GATG-TG-AAGCTTCTTGTTATTG-GTCGGGAAAA--CACA--CGTGATA--CT-G--GTCGT---TTG-A---ATTCT---------------------------AATTA--TGC---------AA----------AG---AA-----TGTA---A-GC-GATATATAT-------------T---GT-GAT-AACTTCATACTTTTT------C-----TG---------TCTTTCT-CA---CACT------T-ATGAAT---A-------------T-------------T-------------GAAATAGTCATTTATACAA-TGTATGACAT-AT--GT-TATTGTAAA-
gi|5 : cC---TGAGGAGAG-C-AGTA-TG-AATCTTTTTGTTATTG-CTCAGAAATA--CATA--CGTGATA--CT-G--GTCGT---TTT-A-----TTTTT-AT----TT-----TG---------AATTT--T-CTC-AGTG-TAA-------CATAC---AA-----TATA---A-AC-GATAGATACGTGTACTACTGAGT---AT-GAT-GA---------TTTTTCTGTCT-----TG---------TCT-----CA---CACT------T-ACAAAT---A-------------T-------------TCAATTGGCAACTCG-------------TA-AT-TGAATTGCAC-AT--GT-GATTGTACA-gcatatctttaaaagagaggattatctcagttttggaacttgcacccaaccgcaattggcaataaaatatgttcaaagcctatcaaatcaaatcatcgttattgatatgtttttagtcattcaca
gi|6 : tgtttggcgtctttaataaat-----T----------AATTT--TGCCC-AATGCTAA-------TATAA---AA-----TGTA---A-AT-GATGGGTAT-------------T---AT-GAT-GA---------TTTA------C-----TG---------TTT-----CA---CACT------T-ACGAAT---A-------------T-------------T---------------------------CA-AT-TG-GTAACTT-GTAGAT-GTTTGTACA-TTAgggttatctaagttttggatcttgtatccaatccctttggcaataaat
gi|7 : TT-AACTTATT--AATG-TTAATTTA-TTATCTTAGG-----GTG--ATGA-ATCTCT-T---CC---GAAGGATGA-A-AATA-TG-AAACTTTTAACTACTGTTTCAGAAATA--CATG--AGCGATA--CT-G--GTCGT---TTT-A---ATTTTTT-ATGTTATT-----TTTTTTATTCGAATTG--TGCTC-ATTGCTAA-------TATAA---AA-----CGTC---A-AT-AATAGATAT-------------T---AT-AAT-gtttaaggagaggattatctaagttttggaacttgtatcaaatctttttgggaagaaaatacatgcatgttcaaatcaacatacactgtcgagtttttaatgttttatat
gi|8 : tactgattttgaaaccTT--TGCTC-AATGCTAA-------TATGA---AA-----TGTATAAA-AT-GATAGATAT-------------T---AT-GAT-GA---------TTTT------CTGTTTTG---------TTT-----CA---CACT------T-ACGAAT---ATTCAATTGGTAACT-------------T-------------G-------------TA-AA-TGTATGGCTC-AT--TT-GTTTGTACATTTATT
gi|9 : TG--ATGA-GTTTAT-TGATTG---TGAGTAGGA-A-TACA-CC-AAGCGTTTTGTTACTG-CTCAGAAGTAATCATA--TA--ATA--CT-G--GTTGT---TTC-G---ATTTTtaaaggagaggattatctaagttttggaacttatatccgatcttttt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTCTTTTTTCACAGTTGGGAACATCTAAATGGCCAAATACACAGTGTATGACAAGTGTGATTGTAAAATATATGTGTATTATATAAAGCAGAGGATTATCTAAGTTTTGTAACTTGCATTAAATCTTTTTTTCTAAATGACTCTAAAATATGTCG
Unaligned ( gi|15 ): TGTAACTATTGTATTTTATTGCAAAAATTGACAAAAGGATTGGATTAATTTATTTTTGAAACTTTTATTCAATCCTTTTGTCAATTTTGGCTATGAAATATGTTCAAATCAAATAAAAACT
Unaligned ( gi|21 ): CACACTAACGCATATTCAATTGGTATCTTGTTAAAATATGGCATATATGTTTGTATGTTATTTAATAAGATTATTTTCGTCCGATGTTTTTGTAA
Unaligned ( gi|24 ): AATATTTAAAGGAGAGGATTATATAAGTTTGTGAAACTCCTTGTGTCTTATTTGGCAATAAAATATGTTCAAATCAAAT
Unaligned ( gi|26 ): AAAAAGAGAGGGTTATCTAAGTTTTGAAACTTGCGTCCTATCCTCTTGTCCTTTTTGGCAATACATATTGTTCAAA