lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 2222 1 000000000000000000000000000000000000000000000000000000000000000000 111111111 22 55555555555555555555555555 111111111 11111111111111111111 1111 000000000000000000000000000000000000000000000000000
lowQualScore : 7 6 22 3333 3 1 666666666666666666666666666666666666666666666666666666666666666666 33 2 2 2 2 4444 2 55 2 2 2 2 22 2 2 22 2 2 2 111111111 2 2 2 6666666 33 444 22 2 2 999999999999999 2 2 00000000000000000000000000 0 2 2 2 2 777777777 2 2 2 2 6666 333 2 8888 2 2 99999999999999999999 22 2 2 22 2 2 2 2 2 2 4444 2 2 2 2 33 99 5 2 4444 222222222222222222222222222222222222222222222222222
lowQualScore : . . .. .... . . .................................................................. .. . . . . .... . .. . . . . .. . . .. . . . ......... . . . ....... .. ... .. . . ............... . . .......................... . . . . . ......... . . . . .... ... . .... . . .................... .. . . .. . . . . . . .... . . . . .. .. . . .... ...................................................
lowQualScore : 0 0 00 5555 3 0 999999999999999999999999999999999999999999999999999999999999999999 44 4 2 1 1 5555 1 66 1 1 0 0 99 1 1 99 1 1 1 333333333 2 5 5 8888888 44 444 55 7 5 777777777777777 5 5 22222222222222222222222222 7 7 5 5 7 777777777 7 7 7 5 8888 777 1 7777 1 1 44444444444444444444 99 1 1 99 0 0 0 0 0 0 2222 0 0 2 4 44 00 4 0 2222 333333333333333333333333333333333333333333333333333
consensus : NNNNNNNNNNNNNATATTTCTAGACTTTCGACAAAT-ATAGT-ATG--TTTA-A-AGT--------------A---CG--AATC-ATA-GAGTATG--TGT-AC----C--A-CA-GGCC-TC-TGA----A-TTT-CTA-T-CA-A-TAA--G-CCG-TAA--AT-T-GTG-T----G----GTA-AGGGT-G-ATA-----T-G--T---ATA--CCCCCTCTA-TA-TATAA-----A--TA---C-A-TAAAA---------T-TGTA--T-----TTAT-A-TA-TA-GAGGGGGTATA-----C---A-TAT-C-A-CCC---TTA---C-C----A-CAC-A----A---------------T--TTA-CGG-C--TTA-T-TG-A-TAG-AAA-T----TCA-GA-GGCC-TG-T--G--GTNTAATT----GTA-T-AT-T------T-TACTT--TACGNNNTTACTNNATTAANNTGTTGAAACTAGAATGATT
Reference ( gi|2 ) : TCCATTGATTATTATTTTTTTGAACTTTCGACAAAT-ATAAT-ATG--TTTA-A-AGT--------------A---CG--AATC-ATA-GGGTATG--TGTGAC----C--A-CA-GGCC-TC-TGA----A-TTC-CTA-T-CA-A-TAA--G-CCG-TAA--AT-T-GTG-T----G----GTA-AGGGT-G-ATA-----T-G--T---ATAC-CCCCCTCTA-TA-TATAA-----A--TA---C-A-TAAAA---------T-TGTA--T-----TTAT-A-TA-TA-GAGGGGGTATA-----T---A-TAT-C-A-CCC---CTA---C-C----A-CAC-A----A---------------T--TTA-CGG-C--TTA-T-TG-A-TAG-AAA-T----TCA-GA-GGCC-TG-T--G--GTGTAATT----GTA-T-GT-T------T-TACTT--TTCAGTC-TACCAGATTAACATAT-----TTAGAATGATT
gi|7 : ATATTTCTAGACTTTT----AAT-GTAGT-ATAA-CGTA-A-AGT--------------AATATGTCAATA-AT---GCTCTGAATGAGAC----CTGA-CA-GGCC-TC-TGA----A-TTT-CTA-T-CA-A-TAA--G-CCA-TAA--AT-T-GTG-T----G----GTA-AGGGT-G-ATA-----T-G--T----TAA-CCCCCTCTA-TA-TATAA-----A--TA---C-A-T
gi|1 : aatatagacacagtcaagcattactttcctcttttcaaatgttttctcaaCGACAAATTATAATTGTGCATTTATA-AGTTCTATTTGTATGTCA---CA--TATCGATA-CAGTATGA-TGT-ATTTT-C--A-CA-G-CC-TC-TGA----A-ATT-CTA-T-CAGA-TAA--G-C-G-TAA--AT-T-AT--T----G-----CA-AGGGTTG-ATA-----T-G--T---ATAC-CCTC-TCTA-TA---------------------G-TG--------------TGT---T-----TTAT-A-TA-TA-GAGAG--TTCA-----C-----TAT-C-A-CCC---TTG---C-C----A-CAT-A----A---------------T--TTA-CGG-C--TTA----G-A-TAG-AAA-T----CCA-GA-GGAC-TGCT--G--GTATAttt
gi|5 : AT-ATAGT---G--TTTA-AGAGA--------------G---TG--AAC---TA-GTGCAT---TGT-ACATAGC--A-CAAGGCC-TC-TGA----A-TTC---A-T-CA-A-TAA--GCCCG-T-A--AT-T-ATGTT----G----GTA-AGGG--G-ATA-----T-G--T---ATA--CCCTCTCT--TA-TAT----------TA---C-C-TG--------------TATA--T-----TTAT-ATTA-TA-GAGAGGCTATA-----CA--A-TAT-C-A-CCA---TTA---C-C----A-CATGA----A---------------T--TTA-CGG-C---TA-T-TG-ACTAGAAAA-T----TCA-GA-GGCC-TG-T-----GTACAACT----GTttaaaggtaaaattctgagggagaaatttgactgagattacatttatcgcaatagtatacagctggctttactgcagttattggaaaacttcgattatctcgagtataaatgttgaatacctt
gi|20 : -ATG--TTCA-A-AAT--------------A---CA--AATT-ATGCGAGTACA--TGT----------A-CA-GGCC-TC-TGA----A-TTT-CTA-T-CA-A-TAcaattgattggattaaagtaaa
gi|4 : atgC-ATA-GAATAT-------AC----C--A-CA-GGCC-TC-TGA----A-TTT-CTA-T-CA-A-TAA--G-CCA-TAA--TT-T-GTG-T----G----GTA-AG
gi|3 : GTATA--TAT--C----C--A-CT-GGCC-TC-TGA----A-TTT-CTA-T-CA-A-TAA--G-CCG-TAA--AT-T-AAG-T----G----GTA-AGGtatatactgaataaagacttacttaattaatttattgaaattagaatgattttccaagtttgctactcgtcatcagaaaattcactgattttagggtatacactgggtacctctacaaaaaagcgtcaatcggcccctcctaaatggtgcgatcatatgtagcaagatgtacaaacaatcccaaacaataacata
gi|19 : GAC----C--A-CA-GGAG-TC-TGA----A-TTT-CTA-T-CA-A-TAC--G-CC-------AT-T-A-----------------------G-ATG-----T-G--T---AT----CCCCTC------TGTAA-----A--TA---C-A-Tacacggtcatatgacatcgatgagttactgaataaaatttaccggtgtgtattttttttttttaataaattcatttgtacatgtgtataaagaaaacttcaccaacagtttttcaatgcgaaattataaattgccagtgtttcagaaactataacaaataatatatcatatatataatgatatatgatcacacacacag
gi|1 : acaAC----C--AGCA-GTCC-TC-TGG----A-TTT-CTA-T-C----TAA--G-CCG-TAA--AT-T-ATG-T----G----GCA-AGGGT-G-ATA-------G--T---GAA----CTCTCTA-TA-TATAA-----A---A---C-A-CA-------------------------------C-TA-TA-GAGAGGGTATA-----C---A-TAT-C-A-ACC---CTT---G-C----A--AT-A----A---------------T--TTA-C-G-C--TTA-TCTG-A-TAG-AAT-T----TCA-GA-GG-C-TG-T--G--
gi|23 : cgacaaattataattgtgcatttataagttctatttgtatgtcacatatcgatacagtatgatgtattttAC----C--G-CA-GGCT-TC-TGA----A-TTT-CTA-T-CA-A-TAA--G-Catattaaaggtaaaattctgagggagaaatttgactgagattacatttatcgcaatagtatacagctggctttactgcagttattggaaaacttcgattatctcgagtataaatgttgaatacctt
gi|22 : C----T--A-CA-GACC-----GA----T-TTC-CTA-T-CA-A-TAA--G-CCG-TAA--AT-T-GTG-T----G----GTttgatttgca
gi|5 : ----C--A-CA-GGCC-TC-TGA----A-TTTTCTAGT-CA-A-TA---G-CCG-TAA--AT-TCATG-T----G----GTA-ATGGT-G-ATA-----TTG--T---ATAG-CCTC-TCTA-TAATATAA-----A--TA---T-A-CAG--------------GTA----------AT-A-TA--A-GAGAGGGTATA-----C---A-TAT-C---CCC---TTA---C-C----AACAT-A----A---------------T--T-A-CGGGC--TTA-T-TG-A-T---GAA-T----TCA-GA-GGCCTTG-T--GCTATGTA
gi|6 : atatagtgtttaagagagtgaactagtgcattg----C--A-CA-GGCC--A-TGA----C-TTT-CTA-T-CA-A-TAA--G-CCG-TAA--AT-T-ATG-TG---G----GTA-AGGGT-G-ATA-----T-GCTT---ATA--CCCCCTCTA-TA-T-----------------C-A-TAAAA---------TATGT---T-----TTAT-A-TATTACGGAGGGCTATA-----C---A-TGTCC-ATCCT---CTA---C-C----A-CAA-A----A---------------T--TTACCGG-CCTTCACT-TGCA-TAG-AAATT----TCACGACGGTC-TG-T--G--tacaactgtcaattgattggattaaagtaaa
gi|6 : gcg----C--A-CA-GACCGTCGTGA----AATTT-CTA-TGCA-AGTGAAGG-CCGGTAA--AT-T-TTG-T----G----GTAGAGGAT-GGACA-----T-G--T---ATAG-CCCTCCGTAATA-TATAA-----A---A---C-A-TA----------------T---T-----TTATGA-TA-TA-GAGGGGGTATAAG---C---A-TAT-C-A-CCC---TTA---C-CC---A-CAT-A----A---------------T--TTA-CGG-C--TTA-T-TG-A-TAG-AAA-G----TCA-T--GGCC-TG-T--GA-ACCTAACT----GTA-aacctaactgtagtcgaatggcttagagataaat
gi|10 : gcg----C--A-CA-GGCC-TC-TGACTGAA-TTT-CTA-T-CA-A-TAA--G-CCA-TAG--AG-T-GTG-TAGTAA----GTA-AGAGT-G-ATA-----T-G--T---ACA-------TCTA-TA-CATAA-----ATCTA---C-A-CAgtcgaatggcttagagataaat
gi|18 : ggacctctgaaattctaccaataagacgtaaag----C--A-CA-AGCC-TC-TGA----A-TTT-CTA-C-CA-A-TAA--A-CCT-TAA--AA-T-GCG-T----G----GTA-AGAGA-A-GT------T-G--T---GTAC-
gi|8 : tcaaat--A-CA-GACC-TC-TGA----T-TTC-CTC-T-CA-A-TAA--G-CCG-TAAATAT-T-GTG-TG---G----GTA-AGGGT-G-ATATACACT-G--T---ATA--CCCCCTTTA-TA-c
gi|12 : aaggattcacttagaaacgtatcggtgaaaaagcaagacaaatttttataatgtacgtctgcatataaaaatatagatcaatcacgggcctc-CA-GGCC-TC-TGA----A-TAT-CTA-T-CA-A-TGA--G-CCA-TAA--AA-T-GTG-T----A----GTA-AGGGT-G-ATA----------T---ATAT-CCCCCTCTA-TA-CACCAGGCGTA--TG---C-A--ACAACTTTTTTTTT-TGTA--T-----TTAT-A-TG-Ta
gi|10 : -GACC-TC-TGA----A-ATT-CTA-C-CA-A-TAA--G-ACG-TAA--AG-T-GTG-T-------------AGATT----TA-----T-G--T---ATA
gi|9 : g-TC-TGA----A-TTT-TTA-T-CA-A-TAA--G-CCA-TAA--AA-T-GTG-T----A----GAA-AGGGT-G-ATA-----T----T---ATATACCCTCTCTA-TA-TATAA-----A--TA---C-ATTAAAA---------T-gatgtacatatcactcttacttactacacactctatggcttattgatagaaattcagtcagaggcctgtg
gi|14 : gtaagaaatttttcaaatggattggtgaagtaactcctcatA-A-TAA--G-CCG-TAA--AA-T-GTG-T----ACGTAGTG-AGGAT-G-ATA-----C-A--T---ATA--CCCCCTCTA-TA-TGTAC-----A--TG---T-A-T
gi|17 : -TAA--ACAT-GTG-T----A----GTA-AGGGT-G-ATA-----T-G--GCAAATAT-CCCTCT-TA-AA-TAT-A-----A--TA---CGA-TAtcgtattttacggcttattgatagaaattcaaa
gi|12 : agtcgttgcataccA-CA-TATAA-----A--TA---C-A-AAAAAAAAAGTTG-T-TGCA--TACGCCTGGT-G-TA-TA-GAGGGGG-ATA-----T---A-TAT-C-A-CCC---TTA---C-T----A-CAC-A----T---------------T--TTA-TGG-C--TCA-T-TG-A-TAG-ATA-T----TCA-GA-GGCC-TG-
gi|10 : -TATCA-----A--TAAGCC-A-TAGAG---------TGTGTA----------GT-A-AG-TA-AGAGTGATATG-----T---A-CAT-CTA-TAC---ATAAATC-T----A-CAC-A----C---------------T--TTA-CGT-C--TTA-T-TG-G-TAG-AAT-T----TCA-GA-GGTC-
gi|10 : gATAA-----G---A---C-G-TAAAG---------TGTGTAGAT-----TTAT-G-TA-TA-GA-----TGTA-----C---A-TAT-C-A-CTC---TTA---C-TTACTA-CAC-A----C---------------T--CTA-TGG-C--TTA-T-TG-A-TAG-AAA-TTCAGTCA-GA-GGCC-TG-T--G--gaaattcagtcagaggcctgtg
gi|7 : ggacctctgaaattctaccaAAA---------T--GTA--T-----TTAT-A-TA-TA-GAGGGGGTTAA-----C---A-TAT-C-A-CCC---TTA---C-C----A-CAC-A----A---------------T--TTA-TGG-C--TTA-T-TG-A-TAG-AAA-T----TCA-GA-GGCC-TG-TCAG--GTCTCATTCAGAGCATT-AT-TGACATAT-TACTT--TACGTTA-TACTACATTAAAA-GT-----CTAGAA
gi|17 : aatatagacacagtcaagcattactttcctcttttcaaatgttttctcA---------T-CGTA--T-----T-AT-A-TT-TA-AGAGGGATATT-----TGCCA-TAT-C-A-CCC---TTA---C-T----A-CAC-AT---G---------------T--TTA-atatttt
gi|9 : agtcgttgcatacct-TGTA--T-----TTAT-A-TA-TA-GAGAGGGTATA-----T---AATAT-C-A-CCC---TTT---C-T----A-CAC-A----T---------------T--TTA-TGG-C--TTA-T-TG-A-TAA-AAA-T----TCA-GA-
gi|19 : gtaagaaatttttcaaatggattggtgaagtaactcctcatattttaa-TGTA--T-----TTAC-A-------GAGGGGATACA-----C---A-T-------------CTA------------------------------------------A-TGG-C--GTA-T-TG-A-TAG-AAA-T----TCA-GA-CTCC-TG-T--G--GT
gi|14 : acaaA--T-----GTAC-A-TA-TA-GAGGGGGTATA-----T---G-TAT-C-A-TCCTCACTA---CGT----A-CAC-ATTTTACGGCTTATTTCGTATT--TTA-CGG-C--TTA-T-TG-A-TAG-AAA-T----TCA-AA-c
gi|8 : atac-TA-TA-AAGGGGGTATACAGTGT---A-TAT-C-A-CCC---TTA---C-CC---A-CAC-A----A---------------TATTTA-CGG-C--TTA-T-TG-A-GAG-GAA-A----TCA-GA-GGTC-TG-T--
gi|18 : aaggattcacttagaaacgtatcggtgaaaaagcaagacaaatttttataatgtacgtctgcatataaaaatatagatcaatcacgggcctc-CTC---TTA---C-C----A-CGC-A----T---------------T--TTA-AGG-T--TTA-T-TG-G-TAG-AAA-T----TCA-GA-GGCT-TG-T--G--a
gi|3 : tcaaatgtacacaacttCC---TTA---C-C----A-CTT-A----A---------------T--TTA-CGG-C--TTA-T-TG-A-TAG-AAA-T----TCA-GA-GGCC-AG-T--G--Gc
gi|4 : C---TTA---C-C----A-CAC-A----A---------------A--TTA-TGG-C--TTA-T-TG-A-TAG-AAA-T----TCA-GA-GGCC-TG-T--G--GTAT-ATT----CTA-T-GTAT------A-TACTGAATAAAGACTTACTTAATTAATTTATTGAAATTAGAATGATTatatatacacacggtcatatgacatcgatgagttactgaataaaatttaccggtgtgtattttttttttttaataaattcatttgtacatgtgtataaagaaaacttcaccaacagtttttcaatgcgaaattataaattgccagtgtttcagaaactataacaaataatatatcatatatataatgatatatgatcacacacacag
gi|22 : A---C-C----A-CAC-A----A---------------T--TTA-CGG-C--TTA-T-TG-A-TAG-GAA-A----TC-----GGTC-TG-T--A--Gttccaagtttgctactcgtcatcagaaaattcactgattttagggtatacactgggtacctctacaaaaaagcgtcaatcggcccctcctaaatggtgcgatcatatgtagcaagatgtacaaacaatcccaaacaataacata
gi|23 : G-C--TTA-T-TG-A-TAG-AAA-T----TCA-GA-AGCC-TG-C--G--GTTTGATT----
gi|20 : TA-T-TG-A-TAG-AAA-T----TCA-GA-GGCC-TG-T--AC-ATGTACTC----GCA-TAAT-T------TGTATTT--Ttgca
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): AAATTAACTGTTTTAACTGATGTGCCACGCAAGGATTCACTTCTAAGAAACGTATCGGTGACAAAGCAAGACGAATTTTTATAATGTACATGTACGTCAATATATAAAAATATAGGT
Unaligned ( gi|13 ): AATTTAACTGGATTTAACTGATATGCCTCGGAAGAATTAACTTAGAAACGTGCTGCTGTCAGAGCAAGACCAATTTGTCAATGAGGTCTGTATATAAATATA
Unaligned ( gi|15 ): AATTAACTGTAACTGATGATTTACTTAGAAACGCACCTGTGACAAAACGAGACGAATTTTGAAAATGTATGTCTTCATATAAAAATAAATGTTAATG
Unaligned ( gi|16 ): CAGGGTTTTGACACAATCTGAGCAAACTGTATATTATACATAGTATATAGGAGTGCTCATATATGCTATATACACTAGTTTGCTCAGATTGTG
Unaligned ( gi|21 ): ATCACATAGAATAGATTATACATGCACATAATTGGTATGATTGT
Unaligned ( gi|24 ): ACAGGGTTTTGACACAATCTGAGCAAGCTAGTGCATATAT
Unaligned ( gi|25 ): GGGTTTTGACACAATCTGAGCAAGCTAGCGTAT
Alignments
lowQualScore : 1 11 1 11 22222 11 11111111 111111 11111 2222222222 111111111 22222222 44444444444 3333333333 44444444444
lowQualScore : 7 6 22 7 3 11 11111 11 6 99999999 3 2 3 3 44 3 222222 44 44444 55 5 2 5555 4 3 1111111111 333333333 0 5 5 5 0 4 888 5 5 4 9999 4 4 4 66 4 4 4 4 4 9999 4 4 4 66 1 22222222 55555555555 4444444444 22 88888888888
lowQualScore : . . .. . . .. ..... .. . ........ . . . . .. . ...... .. ..... .. . . .... . . .......... ......... . . . . . . ... . . . .... . . . .. . . . . . .... . . . .. . ........ ........... .......... .. ...........
lowQualScore : 0 0 00 3 3 22 22222 22 7 55555555 6 9 1 1 22 3 777777 99 00000 55 0 4 9999 4 2 3333333333 666666666 1 0 0 0 2 5 888 0 0 4 4444 4 4 4 11 4 4 4 4 4 4444 4 4 4 99 0 00000000 00000000000 7777777777 00 00000000000
consensus : NNNNNNNNNNNNNATTTTTTTGAACTTTCGACAAATATAGTATGTTTAA-AGTACGAATC-ATA-GA--GTATG-TGT-A---C----CACA-GGCCTCTGAATTTCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GTAAGGGT-GATA-----TG--TATACCCC-CTCTATATATAAATACA-TAAAA--------T-TGTA--T-----TTATA-TA-TA-GAGGGGGTAT---AC-ATAT-CACCCT-TACC----ACAC-A-ATTTA-CGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTNTAAT---T----GTA-TATT------TTACTT--TACGNNNCTACTANATTAANATATT----CTAGAATGATT
Reference ( family-3102 ) : NNNNNNNNNNNNNATATTTCTAGACTTTCGACAAATATAGTATGTTTAA-AGTACGAATC-ATA-GA--GTATG-TGT-A---C----CACA-GGCCTCTGAATTTCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GTAAGGGT-GATA-----TG--TATACCCC-CTCTATATATAAATACA-TAAAA--------T-TGTA--T-----TTATA-TA-TA-GAGGGGGTAT---AC-ATAT-CACCCT-TACC----ACAC-A-ATTTA-CGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTNTAAT---T----GTA-TATT------TTACTT--TACGNNNTTACTNNATTAANNTGTTGAAACTAGAATGATT
gi|1 : ATCGATA-CA--GTATGATGT-A---TTTT-CACA-G-CCTCTGAAATTCTATCAGATAAG-C-GT-AA--ATTAT--T-G-----CAAGGGTTGATA-----TG--TATACCCT-CTCTATA---------G-TG-------------TGT---T-----TTATA-TA-TA-GAGAG--TTC---AC--TAT-CACCCT-TGCC----ACAT-A-ATTTA-CGGC--TTA---G-A-TAG-AAA-T----CCA-GA-GGACTGCT--GGTATA
gi|10 : cgacaaattataattgtgcatttataagttctatttgtatgtcacat-GACCTCTGAAATTCTACCA-ATAAG-ACGT-AA--AGTGTG-T---------AGATT---TA-----TG--TATAttaaaggtaaaattctgagggagaaatttgactgagattacatttatcgcaatagtatacagctggctttactgcagttattggaaaacttcgattatctcgagtataaatgttgaatacctt
gi|10 : gATAAG-ACG-TAAAG--------TGTGTAGAT-----TTATG-TA-TA-GA-----TGT---AC-ATAT-CACTCT-TACTTACTACAC-A-CTCTA-TGGC--TTA-TTG-A-TAG-AAA-TTCAGTCA-GA-GGCCTG-T--Ggatgtacatatcactcttacttactacacactctatggcttattgatagaaattcagtcagaggcctgtg
gi|12 : ggacctctgaaattctaccaACATATAAATACA-AAAAAAAAAGTTGT-TGCA--TACGCCTGGTG-TA-TA-GAGGGGG-AT---AT-ATAT-CACCCT-TACT----ACAC-A-TTTTA-TGGC--TCA-TTG-A-TAG-ATA-T----TCA-GA-GGCCTG-
gi|14 : A-ATAAG-CCGT-AA--AATGTG-T-ACGTAGTGAGGAT-GATA-----CA--TATACCCC-CTCTATATGTACATGTA-T
gi|14 : TTTGAATTTCTATCA-ATAAG-CCGTAAA--ATtcgtattttacggcttattgatagaaattcaaa
gi|17 : atacatgtacatatagagggggtatatgtatcatcctcactacgtacacattttacggcttatttcgtA--------T-CGTA--T-----T-ATA-TT-TA-AGAGGGATATTTGCC-ATAT-CACCCT-TACT----ACAC-ATGTTTA-
gi|18 : agtcgttgcatacct----CACA-AGCCTCTGAATTTCTACCA-ATAAA-CCTT-AA--AATGCG-T-G----GTAAGAGA-AGT------TG--TGTAC
gi|19 : tcaaat-A---C----CACA-GGAGTCTGAATTTCTATCA-ATACG-CC-------ATT--------------AG-------A-----TG--TGTATCCC-CTC----TGTAAATACA-Tc
gi|2 : acaATTTTTTTGAACTTTCGACAAATATAATATGTTTAA-AGTACGAATC-ATA-GG--GTATG-TGTGA---C----CACA-GGCCTCTGAATTCCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GTAAGGGT-GATA-----TG--TATACCCCCCTCTATATATAAATACA-TAAAA--------T-TGTA--T-----TTATA-TA-TA-GAGGGGGTAT---AT-ATAT-CACCCC-TACC----ACAC-A-ATTTA-CGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTGTAAT---T----GTA-TGTT------TTACTT--TTC-AGTCTACCAGATTAACATATT-----TAGAATGATTc
gi|20 : tccattgattattATGTTCAA-AATACAAATT-ATGCGA--GTACA-TGT-A---C-------A-GGCCTCTGAATTTCTATCA-ATA
gi|22 : atg---C----TACA-GACC---GATTTCCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GT
gi|23 : GC--TTA-TTG-A-TAG-AAA-T----TCA-GA-AGCCTG-C--GGTTTGAT---T----
gi|3 : TC-ATATGACCGTGTG-TAT-ATATC----CACT-GGCCTCTGAATTTCTATCA-ATAAG-CCGT-AA--ATTAAG-T-G----GTAAGGtgca
gi|4 : CT-TACC----ACAC-A-AATTA-TGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTATATTCTAT----GTA-TA---------TACTGAATAAAGACTTACTTAATTAATTTATTGAAATTAGAATGATTcatcgatgagttactgaataaaatttaccggtgtgtattttttttttttaataaattcatttgtacatgtgtataaagaaaacttcaccaacagtttttcaatgcgaaattataaattgccagtgtttcagaaactataacaaataatatatcatatatataatgatatatgatcacacacacag
gi|5 : ATATAGT--GTTTAAGAGAGTGAAC---TA-GT--GCAT--TGT-A---CATAGCACAAGGCCTCTGAATTC--ATCA-ATAAGCCCGT--A--ATTATGTT-G----GTAAGGG--GATA-----TG--TATACCCT-CTCT-TATAT---TACC-TG-------------TATA--T-----TTATATTA-TA-GAGAGGCTAT---ACAATAT-CACCAT-TACC----ACATGA-ATTTA-CGGC---TA-TTG-ACTAGAAAA-T----TCA-GA-GGCCTG-T---GTACAAC---T----GTttccaagtttgctactcgtcatcagaaaattcactgattttagggtatacactgggtacctctacaaaaaagcgtcaatcggcccctcctaaatggtgcgatcatatgtagcaagatgtacaaacaatcccaaacaataacata
gi|6 : ----CACA-GGCC-ATGACTTTCTATCA-ATAAG-CCGT-AA--ATTATG-TGG----GTAAGGGT-GATA-----TGCTTATACCCC-CTCTATAT-------CA-TAAAA--------TATGT---T-----TTATA-TATTACGGAGGGCTAT---AC-ATGTCCATCCTCTACC----ACAA-A-ATTTACCGGCCTTCACTTGCA-TAG-AAATT----TCACGACGGTCTG-T--Gcaattgattggattaaagtaaa
gi|7 : gcgAAA--------T--GTA--T-----TTATA-TA-TA-GAGGGGGTTA---AC-ATAT-CACCCT-TACC----ACAC-A-ATTTA-TGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-TCAGGTCTCAT---TCAGAGCATTATTGACATATTACTT--TACGTTA-TACTACATTAAAA-GT-----CTAGAAaacctaactgtagtcgaatggcttagagataaat
gi|8 : aatatagacacagtcaagcattactttcctcttttcaaatgttttctcACA-GACCTCTGATTTCCTCTCA-ATAAG-CCGT-AAATATTGTG-TGG----GTAAGGGT-GATATACACTG--TATACCCC-CTTTATAatatttt
gi|9 : aaggattcacttagaaacgtatcggtgaaaaagcaagacaaatttttataatgtacgtctgcatataaaaatatagatcaatcacgggcctcTCTGAATTTTTATCA-ATAAG-CCAT-AA--AATGTG-T-A----GAAAGGGT-GATAT----TA--TATACCCT-CTCTATATATAAATACATTAAAA--------T-a
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AAATTAACTGTTTTAACTGATGTGCCACGCAAGGATTCACTTCTAAGAAACGTATCGGTGACAAAGCAAGACGAATTTTTATAATGTACATGTACGTCAATATATAAAAATATAGGT
Unaligned ( gi|13 ): AATTTAACTGGATTTAACTGATATGCCTCGGAAGAATTAACTTAGAAACGTGCTGCTGTCAGAGCAAGACCAATTTGTCAATGAGGTCTGTATATAAATATA
Unaligned ( gi|15 ): AATTAACTGTAACTGATGATTTACTTAGAAACGCACCTGTGACAAAACGAGACGAATTTTGAAAATGTATGTCTTCATATAAAAATAAATGTTAATG
Unaligned ( gi|16 ): CAGGGTTTTGACACAATCTGAGCAAACTGTATATTATACATAGTATATAGGAGTGCTCATATATGCTATATACACTAGTTTGCTCAGATTGTG
Unaligned ( gi|21 ): ATCACATAGAATAGATTATACATGCACATAATTGGTATGATTGT
Unaligned ( gi|24 ): ACAGGGTTTTGACACAATCTGAGCAAGCTAGTGCATATAT
Unaligned ( gi|25 ): GGGTTTTGACACAATCTGAGCAAGCTAGCGTAT
Alignments
lowQualScore : 1 11 22222 11 11111111 111111 11111 2222222222 111111111 22222222 44444444444 3333333333 11 44444
lowQualScore : 7 3 11 11111 11 6 99999999 3 2 3 3 44 3 222222 44 44444 55 5 2 5555 4 3 1111111111 333333333 0 5 5 5 0 4 888 5 5 4 9999 4 4 4 66 4 4 4 4 4 9999 4 4 4 66 1 22222222 55555555555 4444444444 1 77 00000
lowQualScore : . . .. ..... .. . ........ . . . . .. . ...... .. ..... .. . . .... . . .......... ......... . . . . . . ... . . . .... . . . .. . . . . . .... . . . .. . ........ ........... .......... . .. .....
lowQualScore : 3 3 22 22222 22 7 55555555 6 9 1 1 22 3 777777 99 00000 55 0 4 9999 4 2 3333333333 666666666 1 0 0 0 2 5 888 0 0 4 4444 4 4 4 11 4 4 4 4 4 4444 4 4 4 99 0 00000000 00000000000 3333333333 0 00 33333
consensus : NNNNNNNNNNNNNATTTTTTTGAACTTTCGACAAATATAGTATGTTTAA-AGTACGAATC-ATA-GA--GTATG-TGT-A---C----CACA-GGCCTCTGAATTTCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GTAAGGGT-GATA-----TG--TATACCCC-CTCTATATATAAATACA-TAAAA--------T-TGTA--T-----TTATA-TA-TA-GAGGGGGTAT---AC-ATAT-CACCCT-TACC----ACAC-A-ATTTA-CGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTNTAAT---T----GTA-TATT------TTACTT--TACGNNNCTACTANATTAAN-TATT----CTAGAATGATT
Reference ( family-3102 ) : NNNNNNNNNNNNNATTTTTTTGAACTTTCGACAAATATAGTATGTTTAA-AGTACGAATC-ATA-GA--GTATG-TGT-A---C----CACA-GGCCTCTGAATTTCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GTAAGGGT-GATA-----TG--TATACCCC-CTCTATATATAAATACA-TAAAA--------T-TGTA--T-----TTATA-TA-TA-GAGGGGGTAT---AC-ATAT-CACCCT-TACC----ACAC-A-ATTTA-CGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTNTAAT---T----GTA-TATT------TTACTT--TACGNNNCTACTANATTAANATATT----CTAGAATGATT
gi|1 : ATCGATA-CA--GTATGATGT-A---TTTT-CACA-G-CCTCTGAAATTCTATCAGATAAG-C-GT-AA--ATTAT--T-G-----CAAGGGTTGATA-----TG--TATACCCT-CTCTATA---------G-TG-------------TGT---T-----TTATA-TA-TA-GAGAG--TTC---AC--TAT-CACCCT-TGCC----ACAT-A-ATTTA-CGGC--TTA---G-A-TAG-AAA-T----CCA-GA-GGACTGCT--GGTATA
gi|10 : cgacaaattataattgtgcatttataagttctatttgtatgtcacat-GACCTCTGAAATTCTACCA-ATAAG-ACGT-AA--AGTGTG-T---------AGATT---TA-----TG--TATAttaaaggtaaaattctgagggagaaatttgactgagattacatttatcgcaatagtatacagctggctttactgcagttattggaaaacttcgattatctcgagtataaatgttgaatacctt
gi|10 : gATAAG-ACG-TAAAG--------TGTGTAGAT-----TTATG-TA-TA-GA-----TGT---AC-ATAT-CACTCT-TACTTACTACAC-A-CTCTA-TGGC--TTA-TTG-A-TAG-AAA-TTCAGTCA-GA-GGCCTG-T--Ggatgtacatatcactcttacttactacacactctatggcttattgatagaaattcagtcagaggcctgtg
gi|12 : ggacctctgaaattctaccaACATATAAATACA-AAAAAAAAAGTTGT-TGCA--TACGCCTGGTG-TA-TA-GAGGGGG-AT---AT-ATAT-CACCCT-TACT----ACAC-A-TTTTA-TGGC--TCA-TTG-A-TAG-ATA-T----TCA-GA-GGCCTG-
gi|14 : A-ATAAG-CCGT-AA--AATGTG-T-ACGTAGTGAGGAT-GATA-----CA--TATACCCC-CTCTATATGTACATGTA-T
gi|14 : TTTGAATTTCTATCA-ATAAG-CCGTAAA--ATtcgtattttacggcttattgatagaaattcaaa
gi|17 : atacatgtacatatagagggggtatatgtatcatcctcactacgtacacattttacggcttatttcgtA--------T-CGTA--T-----T-ATA-TT-TA-AGAGGGATATTTGCC-ATAT-CACCCT-TACT----ACAC-ATGTTTA-
gi|18 : agtcgttgcatacct----CACA-AGCCTCTGAATTTCTACCA-ATAAA-CCTT-AA--AATGCG-T-G----GTAAGAGA-AGT------TG--TGTAC
gi|19 : tcaaat-A---C----CACA-GGAGTCTGAATTTCTATCA-ATACG-CC-------ATT--------------AG-------A-----TG--TGTATCCC-CTC----TGTAAATACA-Tc
gi|2 : acaATTTTTTTGAACTTTCGACAAATATAATATGTTTAA-AGTACGAATC-ATA-GG--GTATG-TGTGA---C----CACA-GGCCTCTGAATTCCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GTAAGGGT-GATA-----TG--TATACCCCCCTCTATATATAAATACA-TAAAA--------T-TGTA--T-----TTATA-TA-TA-GAGGGGGTAT---AT-ATAT-CACCCC-TACC----ACAC-A-ATTTA-CGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTGTAAT---T----GTA-TGTT------TTACTT--TTC-AGTCTACCAGATTAACATATT-----TAGAATGATTc
gi|20 : tccattgattattATGTTCAA-AATACAAATT-ATGCGA--GTACA-TGT-A---C-------A-GGCCTCTGAATTTCTATCA-ATA
gi|22 : atg---C----TACA-GACC---GATTTCCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GT
gi|23 : GC--TTA-TTG-A-TAG-AAA-T----TCA-GA-AGCCTG-C--GGTTTGAT---T----
gi|3 : TC-ATATGACCGTGTG-TAT-ATATC----CACT-GGCCTCTGAATTTCTATCA-ATAAG-CCGT-AA--ATTAAG-T-G----GTAAGGtgca
gi|4 : CT-TACC----ACAC-A-AATTA-TGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTATATTCTAT----GTA-TA---------TACTGAATAAAGACTTACTTAATTAATTTATTGAAATTAGAATGATTcatcgatgagttactgaataaaatttaccggtgtgtattttttttttttaataaattcatttgtacatgtgtataaagaaaacttcaccaacagtttttcaatgcgaaattataaattgccagtgtttcagaaactataacaaataatatatcatatatataatgatatatgatcacacacacag
gi|5 : ATATAGT--GTTTAAGAGAGTGAAC---TA-GT--GCAT--TGT-A---CATAGCACAAGGCCTCTGAATTC--ATCA-ATAAGCCCGT--A--ATTATGTT-G----GTAAGGG--GATA-----TG--TATACCCT-CTCT-TATAT---TACC-TG-------------TATA--T-----TTATATTA-TA-GAGAGGCTAT---ACAATAT-CACCAT-TACC----ACATGA-ATTTA-CGGC---TA-TTG-ACTAGAAAA-T----TCA-GA-GGCCTG-T---GTACAAC---T----GTttccaagtttgctactcgtcatcagaaaattcactgattttagggtatacactgggtacctctacaaaaaagcgtcaatcggcccctcctaaatggtgcgatcatatgtagcaagatgtacaaacaatcccaaacaataacata
gi|6 : ----CACA-GGCC-ATGACTTTCTATCA-ATAAG-CCGT-AA--ATTATG-TGG----GTAAGGGT-GATA-----TGCTTATACCCC-CTCTATAT-------CA-TAAAA--------TATGT---T-----TTATA-TATTACGGAGGGCTAT---AC-ATGTCCATCCTCTACC----ACAA-A-ATTTACCGGCCTTCACTTGCA-TAG-AAATT----TCACGACGGTCTG-T--Gcaattgattggattaaagtaaa
gi|7 : gcgAAA--------T--GTA--T-----TTATA-TA-TA-GAGGGGGTTA---AC-ATAT-CACCCT-TACC----ACAC-A-ATTTA-TGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-TCAGGTCTCAT---TCAGAGCATTATTGACATATTACTT--TACGTTA-TACTACATTAAA--AGT----CTAGAAaacctaactgtagtcgaatggcttagagataaat
gi|8 : aatatagacacagtcaagcattactttcctcttttcaaatgttttctcACA-GACCTCTGATTTCCTCTCA-ATAAG-CCGT-AAATATTGTG-TGG----GTAAGGGT-GATATACACTG--TATACCCC-CTTTATAatatttt
gi|9 : aaggattcacttagaaacgtatcggtgaaaaagcaagacaaatttttataatgtacgtctgcatataaaaatatagatcaatcacgggcctcTCTGAATTTTTATCA-ATAAG-CCAT-AA--AATGTG-T-A----GAAAGGGT-GATAT----TA--TATACCCT-CTCTATATATAAATACATTAAAA--------T-a
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AAATTAACTGTTTTAACTGATGTGCCACGCAAGGATTCACTTCTAAGAAACGTATCGGTGACAAAGCAAGACGAATTTTTATAATGTACATGTACGTCAATATATAAAAATATAGGT
Unaligned ( gi|13 ): AATTTAACTGGATTTAACTGATATGCCTCGGAAGAATTAACTTAGAAACGTGCTGCTGTCAGAGCAAGACCAATTTGTCAATGAGGTCTGTATATAAATATA
Unaligned ( gi|15 ): AATTAACTGTAACTGATGATTTACTTAGAAACGCACCTGTGACAAAACGAGACGAATTTTGAAAATGTATGTCTTCATATAAAAATAAATGTTAATG
Unaligned ( gi|16 ): CAGGGTTTTGACACAATCTGAGCAAACTGTATATTATACATAGTATATAGGAGTGCTCATATATGCTATATACACTAGTTTGCTCAGATTGTG
Unaligned ( gi|21 ): ATCACATAGAATAGATTATACATGCACATAATTGGTATGATTGT
Unaligned ( gi|24 ): ACAGGGTTTTGACACAATCTGAGCAAGCTAGTGCATATAT
Unaligned ( gi|25 ): GGGTTTTGACACAATCTGAGCAAGCTAGCGTAT
Alignments
lowQualScore : 1 11 22222 11 11111111 111111 11111 2222222222 111111111 22222222 44444444444 3333333333 55555555555
lowQualScore : 7 3 11 11111 11 6 99999999 3 2 3 3 44 3 222222 44 44444 55 5 2 5555 4 3 1111111111 333333333 0 5 5 5 0 4 888 5 5 4 9999 4 4 4 66 4 4 4 4 4 9999 4 4 4 66 1 22222222 55555555555 4444444444 1 66666666666
lowQualScore : . . .. ..... .. . ........ . . . . .. . ...... .. ..... .. . . .... . . .......... ......... . . . . . . ... . . . .... . . . .. . . . . . .... . . . .. . ........ ........... .......... . ...........
lowQualScore : 3 3 22 22222 22 7 55555555 6 9 1 1 22 3 777777 99 00000 55 0 4 9999 4 2 3333333333 666666666 1 0 0 0 2 5 888 0 0 4 4444 4 4 4 11 4 4 4 4 4 4444 4 4 4 99 0 00000000 00000000000 3333333333 0 33333333333
consensus : NNNNNNNNNNNNNATTTTTTTGAACTTTCGACAAATATAGTATGTTTAA-AGTACGAATC-ATA-GA--GTATG-TGT-A---C----CACA-GGCCTCTGAATTTCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GTAAGGGT-GATA-----TG--TATACCCC-CTCTATATATAAATACA-TAAAA--------T-TGTA--T-----TTATA-TA-TA-GAGGGGGTAT---AC-ATAT-CACCCT-TACC----ACAC-A-ATTTA-CGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTNTAAT---T----GTA-TATT------TTACTT--TACGNNNCTACTANATTAACATATT----CTAGAATGATT
Reference ( family-3102 ) : NNNNNNNNNNNNNATTTTTTTGAACTTTCGACAAATATAGTATGTTTAA-AGTACGAATC-ATA-GA--GTATG-TGT-A---C----CACA-GGCCTCTGAATTTCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GTAAGGGT-GATA-----TG--TATACCCC-CTCTATATATAAATACA-TAAAA--------T-TGTA--T-----TTATA-TA-TA-GAGGGGGTAT---AC-ATAT-CACCCT-TACC----ACAC-A-ATTTA-CGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTNTAAT---T----GTA-TATT------TTACTT--TACGNNNCTACTANATTAA-NTATT----CTAGAATGATT
gi|1 : ATCGATA-CA--GTATGATGT-A---TTTT-CACA-G-CCTCTGAAATTCTATCAGATAAG-C-GT-AA--ATTAT--T-G-----CAAGGGTTGATA-----TG--TATACCCT-CTCTATA---------G-TG-------------TGT---T-----TTATA-TA-TA-GAGAG--TTC---AC--TAT-CACCCT-TGCC----ACAT-A-ATTTA-CGGC--TTA---G-A-TAG-AAA-T----CCA-GA-GGACTGCT--GGTATA
gi|10 : cgacaaattataattgtgcatttataagttctatttgtatgtcacat-GACCTCTGAAATTCTACCA-ATAAG-ACGT-AA--AGTGTG-T---------AGATT---TA-----TG--TATAttaaaggtaaaattctgagggagaaatttgactgagattacatttatcgcaatagtatacagctggctttactgcagttattggaaaacttcgattatctcgagtataaatgttgaatacctt
gi|10 : gATAAG-ACG-TAAAG--------TGTGTAGAT-----TTATG-TA-TA-GA-----TGT---AC-ATAT-CACTCT-TACTTACTACAC-A-CTCTA-TGGC--TTA-TTG-A-TAG-AAA-TTCAGTCA-GA-GGCCTG-T--Ggatgtacatatcactcttacttactacacactctatggcttattgatagaaattcagtcagaggcctgtg
gi|12 : ggacctctgaaattctaccaACATATAAATACA-AAAAAAAAAGTTGT-TGCA--TACGCCTGGTG-TA-TA-GAGGGGG-AT---AT-ATAT-CACCCT-TACT----ACAC-A-TTTTA-TGGC--TCA-TTG-A-TAG-ATA-T----TCA-GA-GGCCTG-
gi|14 : A-ATAAG-CCGT-AA--AATGTG-T-ACGTAGTGAGGAT-GATA-----CA--TATACCCC-CTCTATATGTACATGTA-T
gi|14 : TTTGAATTTCTATCA-ATAAG-CCGTAAA--ATtcgtattttacggcttattgatagaaattcaaa
gi|17 : atacatgtacatatagagggggtatatgtatcatcctcactacgtacacattttacggcttatttcgtA--------T-CGTA--T-----T-ATA-TT-TA-AGAGGGATATTTGCC-ATAT-CACCCT-TACT----ACAC-ATGTTTA-
gi|18 : agtcgttgcatacct----CACA-AGCCTCTGAATTTCTACCA-ATAAA-CCTT-AA--AATGCG-T-G----GTAAGAGA-AGT------TG--TGTAC
gi|19 : tcaaat-A---C----CACA-GGAGTCTGAATTTCTATCA-ATACG-CC-------ATT--------------AG-------A-----TG--TGTATCCC-CTC----TGTAAATACA-Tc
gi|2 : acaATTTTTTTGAACTTTCGACAAATATAATATGTTTAA-AGTACGAATC-ATA-GG--GTATG-TGTGA---C----CACA-GGCCTCTGAATTCCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GTAAGGGT-GATA-----TG--TATACCCCCCTCTATATATAAATACA-TAAAA--------T-TGTA--T-----TTATA-TA-TA-GAGGGGGTAT---AT-ATAT-CACCCC-TACC----ACAC-A-ATTTA-CGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTGTAAT---T----GTA-TGTT------TTACTT--TTC-AGTCTACCAGATTAACATATT-----TAGAATGATTc
gi|20 : tccattgattattATGTTCAA-AATACAAATT-ATGCGA--GTACA-TGT-A---C-------A-GGCCTCTGAATTTCTATCA-ATA
gi|22 : atg---C----TACA-GACC---GATTTCCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GT
gi|23 : GC--TTA-TTG-A-TAG-AAA-T----TCA-GA-AGCCTG-C--GGTTTGAT---T----
gi|3 : TC-ATATGACCGTGTG-TAT-ATATC----CACT-GGCCTCTGAATTTCTATCA-ATAAG-CCGT-AA--ATTAAG-T-G----GTAAGGtgca
gi|4 : CT-TACC----ACAC-A-AATTA-TGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTATATTCTAT----GTA-TA---------TACTGAATAAAGACTTACTTAATTAATTTATTGAAATTAGAATGATTcatcgatgagttactgaataaaatttaccggtgtgtattttttttttttaataaattcatttgtacatgtgtataaagaaaacttcaccaacagtttttcaatgcgaaattataaattgccagtgtttcagaaactataacaaataatatatcatatatataatgatatatgatcacacacacag
gi|5 : ATATAGT--GTTTAAGAGAGTGAAC---TA-GT--GCAT--TGT-A---CATAGCACAAGGCCTCTGAATTC--ATCA-ATAAGCCCGT--A--ATTATGTT-G----GTAAGGG--GATA-----TG--TATACCCT-CTCT-TATAT---TACC-TG-------------TATA--T-----TTATATTA-TA-GAGAGGCTAT---ACAATAT-CACCAT-TACC----ACATGA-ATTTA-CGGC---TA-TTG-ACTAGAAAA-T----TCA-GA-GGCCTG-T---GTACAAC---T----GTttccaagtttgctactcgtcatcagaaaattcactgattttagggtatacactgggtacctctacaaaaaagcgtcaatcggcccctcctaaatggtgcgatcatatgtagcaagatgtacaaacaatcccaaacaataacata
gi|6 : ----CACA-GGCC-ATGACTTTCTATCA-ATAAG-CCGT-AA--ATTATG-TGG----GTAAGGGT-GATA-----TGCTTATACCCC-CTCTATAT-------CA-TAAAA--------TATGT---T-----TTATA-TATTACGGAGGGCTAT---AC-ATGTCCATCCTCTACC----ACAA-A-ATTTACCGGCCTTCACTTGCA-TAG-AAATT----TCACGACGGTCTG-T--Gcaattgattggattaaagtaaa
gi|7 : gcgAAA--------T--GTA--T-----TTATA-TA-TA-GAGGGGGTTA---AC-ATAT-CACCCT-TACC----ACAC-A-ATTTA-TGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-TCAGGTCTCAT---TCAGAGCATTATTGACATATTACTT--TACGTTA-TACTACATTAA-A-AGT----CTAGAAaacctaactgtagtcgaatggcttagagataaat
gi|8 : aatatagacacagtcaagcattactttcctcttttcaaatgttttctcACA-GACCTCTGATTTCCTCTCA-ATAAG-CCGT-AAATATTGTG-TGG----GTAAGGGT-GATATACACTG--TATACCCC-CTTTATAatatttt
gi|9 : aaggattcacttagaaacgtatcggtgaaaaagcaagacaaatttttataatgtacgtctgcatataaaaatatagatcaatcacgggcctcTCTGAATTTTTATCA-ATAAG-CCAT-AA--AATGTG-T-A----GAAAGGGT-GATAT----TA--TATACCCT-CTCTATATATAAATACATTAAAA--------T-a
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AAATTAACTGTTTTAACTGATGTGCCACGCAAGGATTCACTTCTAAGAAACGTATCGGTGACAAAGCAAGACGAATTTTTATAATGTACATGTACGTCAATATATAAAAATATAGGT
Unaligned ( gi|13 ): AATTTAACTGGATTTAACTGATATGCCTCGGAAGAATTAACTTAGAAACGTGCTGCTGTCAGAGCAAGACCAATTTGTCAATGAGGTCTGTATATAAATATA
Unaligned ( gi|15 ): AATTAACTGTAACTGATGATTTACTTAGAAACGCACCTGTGACAAAACGAGACGAATTTTGAAAATGTATGTCTTCATATAAAAATAAATGTTAATG
Unaligned ( gi|16 ): CAGGGTTTTGACACAATCTGAGCAAACTGTATATTATACATAGTATATAGGAGTGCTCATATATGCTATATACACTAGTTTGCTCAGATTGTG
Unaligned ( gi|21 ): ATCACATAGAATAGATTATACATGCACATAATTGGTATGATTGT
Unaligned ( gi|24 ): ACAGGGTTTTGACACAATCTGAGCAAGCTAGTGCATATAT
Unaligned ( gi|25 ): GGGTTTTGACACAATCTGAGCAAGCTAGCGTAT
Alignments
lowQualScore : 1 11 22222 11 11111111 111111 11111 2222222222 111111111 22222222 44444444444 3333333333 111 44444
lowQualScore : 7 3 11 11111 11 6 99999999 3 2 3 3 44 3 222222 44 44444 55 5 2 5555 4 3 1111111111 333333333 0 5 5 5 0 4 888 5 5 4 9999 4 4 4 66 4 4 4 4 4 9999 4 4 4 66 1 22222222 55555555555 4444444444 1 999 00000
lowQualScore : . . .. ..... .. . ........ . . . . .. . ...... .. ..... .. . . .... . . .......... ......... . . . . . . ... . . . .... . . . .. . . . . . .... . . . .. . ........ ........... .......... . ... .....
lowQualScore : 3 3 22 22222 22 7 55555555 6 9 1 1 22 3 777777 99 00000 55 0 4 9999 4 2 3333333333 666666666 1 0 0 0 2 5 888 0 0 4 4444 4 4 4 11 4 4 4 4 4 4444 4 4 4 99 0 00000000 00000000000 3333333333 0 000 33333
consensus : NNNNNNNNNNNNNATTTTTTTGAACTTTCGACAAATATAGTATGTTTAA-AGTACGAATC-ATA-GA--GTATG-TGT-A---C----CACA-GGCCTCTGAATTTCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GTAAGGGT-GATA-----TG--TATACCCC-CTCTATATATAAATACA-TAAAA--------T-TGTA--T-----TTATA-TA-TA-GAGGGGGTAT---AC-ATAT-CACCCT-TACC----ACAC-A-ATTTA-CGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTNTAAT---T----GTA-TATT------TTACTT--TACGNNNCTACTANATTAACATATT----CTAGAATGATT
Reference ( family-3102 ) : NNNNNNNNNNNNNATTTTTTTGAACTTTCGACAAATATAGTATGTTTAA-AGTACGAATC-ATA-GA--GTATG-TGT-A---C----CACA-GGCCTCTGAATTTCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GTAAGGGT-GATA-----TG--TATACCCC-CTCTATATATAAATACA-TAAAA--------T-TGTA--T-----TTATA-TA-TA-GAGGGGGTAT---AC-ATAT-CACCCT-TACC----ACAC-A-ATTTA-CGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTNTAAT---T----GTA-TATT------TTACTT--TACGNNNCTACTANATTAACATATT----CTAGAATGATT
gi|1 : ATCGATA-CA--GTATGATGT-A---TTTT-CACA-G-CCTCTGAAATTCTATCAGATAAG-C-GT-AA--ATTAT--T-G-----CAAGGGTTGATA-----TG--TATACCCT-CTCTATA---------G-TG-------------TGT---T-----TTATA-TA-TA-GAGAG--TTC---AC--TAT-CACCCT-TGCC----ACAT-A-ATTTA-CGGC--TTA---G-A-TAG-AAA-T----CCA-GA-GGACTGCT--GGTATA
gi|10 : cgacaaattataattgtgcatttataagttctatttgtatgtcacat-GACCTCTGAAATTCTACCA-ATAAG-ACGT-AA--AGTGTG-T---------AGATT---TA-----TG--TATAttaaaggtaaaattctgagggagaaatttgactgagattacatttatcgcaatagtatacagctggctttactgcagttattggaaaacttcgattatctcgagtataaatgttgaatacctt
gi|10 : gATAAG-ACG-TAAAG--------TGTGTAGAT-----TTATG-TA-TA-GA-----TGT---AC-ATAT-CACTCT-TACTTACTACAC-A-CTCTA-TGGC--TTA-TTG-A-TAG-AAA-TTCAGTCA-GA-GGCCTG-T--Ggatgtacatatcactcttacttactacacactctatggcttattgatagaaattcagtcagaggcctgtg
gi|12 : ggacctctgaaattctaccaACATATAAATACA-AAAAAAAAAGTTGT-TGCA--TACGCCTGGTG-TA-TA-GAGGGGG-AT---AT-ATAT-CACCCT-TACT----ACAC-A-TTTTA-TGGC--TCA-TTG-A-TAG-ATA-T----TCA-GA-GGCCTG-
gi|14 : A-ATAAG-CCGT-AA--AATGTG-T-ACGTAGTGAGGAT-GATA-----CA--TATACCCC-CTCTATATGTACATGTA-T
gi|14 : TTTGAATTTCTATCA-ATAAG-CCGTAAA--ATtcgtattttacggcttattgatagaaattcaaa
gi|17 : atacatgtacatatagagggggtatatgtatcatcctcactacgtacacattttacggcttatttcgtA--------T-CGTA--T-----T-ATA-TT-TA-AGAGGGATATTTGCC-ATAT-CACCCT-TACT----ACAC-ATGTTTA-
gi|18 : agtcgttgcatacct----CACA-AGCCTCTGAATTTCTACCA-ATAAA-CCTT-AA--AATGCG-T-G----GTAAGAGA-AGT------TG--TGTAC
gi|19 : tcaaat-A---C----CACA-GGAGTCTGAATTTCTATCA-ATACG-CC-------ATT--------------AG-------A-----TG--TGTATCCC-CTC----TGTAAATACA-Tc
gi|2 : acaATTTTTTTGAACTTTCGACAAATATAATATGTTTAA-AGTACGAATC-ATA-GG--GTATG-TGTGA---C----CACA-GGCCTCTGAATTCCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GTAAGGGT-GATA-----TG--TATACCCCCCTCTATATATAAATACA-TAAAA--------T-TGTA--T-----TTATA-TA-TA-GAGGGGGTAT---AT-ATAT-CACCCC-TACC----ACAC-A-ATTTA-CGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTGTAAT---T----GTA-TGTT------TTACTT--TTC-AGTCTACCAGATTAACATATT-----TAGAATGATTc
gi|20 : tccattgattattATGTTCAA-AATACAAATT-ATGCGA--GTACA-TGT-A---C-------A-GGCCTCTGAATTTCTATCA-ATA
gi|22 : atg---C----TACA-GACC---GATTTCCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GT
gi|23 : GC--TTA-TTG-A-TAG-AAA-T----TCA-GA-AGCCTG-C--GGTTTGAT---T----
gi|3 : TC-ATATGACCGTGTG-TAT-ATATC----CACT-GGCCTCTGAATTTCTATCA-ATAAG-CCGT-AA--ATTAAG-T-G----GTAAGGtgca
gi|4 : CT-TACC----ACAC-A-AATTA-TGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTATATTCTAT----GTA-TA---------TACTGAATAAAGACTTACTTAATTAATTTATTGAAATTAGAATGATTcatcgatgagttactgaataaaatttaccggtgtgtattttttttttttaataaattcatttgtacatgtgtataaagaaaacttcaccaacagtttttcaatgcgaaattataaattgccagtgtttcagaaactataacaaataatatatcatatatataatgatatatgatcacacacacag
gi|5 : ATATAGT--GTTTAAGAGAGTGAAC---TA-GT--GCAT--TGT-A---CATAGCACAAGGCCTCTGAATTC--ATCA-ATAAGCCCGT--A--ATTATGTT-G----GTAAGGG--GATA-----TG--TATACCCT-CTCT-TATAT---TACC-TG-------------TATA--T-----TTATATTA-TA-GAGAGGCTAT---ACAATAT-CACCAT-TACC----ACATGA-ATTTA-CGGC---TA-TTG-ACTAGAAAA-T----TCA-GA-GGCCTG-T---GTACAAC---T----GTttccaagtttgctactcgtcatcagaaaattcactgattttagggtatacactgggtacctctacaaaaaagcgtcaatcggcccctcctaaatggtgcgatcatatgtagcaagatgtacaaacaatcccaaacaataacata
gi|6 : ----CACA-GGCC-ATGACTTTCTATCA-ATAAG-CCGT-AA--ATTATG-TGG----GTAAGGGT-GATA-----TGCTTATACCCC-CTCTATAT-------CA-TAAAA--------TATGT---T-----TTATA-TATTACGGAGGGCTAT---AC-ATGTCCATCCTCTACC----ACAA-A-ATTTACCGGCCTTCACTTGCA-TAG-AAATT----TCACGACGGTCTG-T--Gcaattgattggattaaagtaaa
gi|7 : gcgAAA--------T--GTA--T-----TTATA-TA-TA-GAGGGGGTTA---AC-ATAT-CACCCT-TACC----ACAC-A-ATTTA-TGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-TCAGGTCTCAT---TCAGAGCATTATTGACATATTACTT--TACGTTA-TACTACATTAA-A-AGT----CTAGAAaacctaactgtagtcgaatggcttagagataaat
gi|8 : aatatagacacagtcaagcattactttcctcttttcaaatgttttctcACA-GACCTCTGATTTCCTCTCA-ATAAG-CCGT-AAATATTGTG-TGG----GTAAGGGT-GATATACACTG--TATACCCC-CTTTATAatatttt
gi|9 : aaggattcacttagaaacgtatcggtgaaaaagcaagacaaatttttataatgtacgtctgcatataaaaatatagatcaatcacgggcctcTCTGAATTTTTATCA-ATAAG-CCAT-AA--AATGTG-T-A----GAAAGGGT-GATAT----TA--TATACCCT-CTCTATATATAAATACATTAAAA--------T-a
blockSeqs : A G C TGACC G G CATAG A . C A AT T ACGTA T TACAC CT C A AAAT T A AAAAGTTGT ATACGCC T T C G TTG A C C TACT G T C CT C C C A T TCAG C C . CA G TCAGA TTATTGACATA AATAAAGACT A TTT GAAAT
blockSeqs : . . T CGA A . TATC . . . . . . GG T T . . A ACAT . A TG AGAT . . . A . . . . . . . . . . . . . . . . . . . T CTAT TA TACGTTA C A C
blockSeqs : C GG G . C . . . . . . GG A . . . G AAAT . A TA AT . . . G . . . . . . . . . . . . . . . . . . . A T
blockSeqs : . GT . . C . . . . . . G T . . . G AAAT . A T AT . . . C . . . . . . . . . . . . . . . . . . . A T
blockSeqs : . C . . . . . . G T . . . A AAAT . A T AT . . . C . . . . . . . . . . . . . . . . . . . C
blockSeqs : C . . . . . . G T . . . A AAG . A T AT . . . G . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . G T . . . A T . . T T . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . G . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . A . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . .
blockSeqs : .
blockSeqCons : C* G* C******* T* AAAT T********* AT*******
originalCons : NNNNNNNNNNNNNATTTTTTTGAACTTTCGACAAATATAGTATGTTTAA-AGTACGAATC-ATA-GA--GTATG-TGT-A---C----CACA-GGCCTCTGAATTTCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GTAAGGGT-GATA-----TG--TATACCCC-CTCTATATATAAATACA-TAAAA--------T-TGTA--T-----TTATA-TA-TA-GAGGGGGTAT---AC-ATAT-CACCCT-TACC----ACAC-A-ATTTA-CGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTNTAAT---T----GTA-TATT------TTACTT--TACGNNNCTACTANATTAACATATT----CTAGAATGATT
finalCons : NNNNNNNNNNNNNATTTTTTTGAACTTTCGACAAATATAGTATGTTTAA-AGTACGAATC-ATA-GA--GTATG-TGT-AC-------CACA-GGCCTCTGAATTTCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GTAAGGGT-GATA-----TG--TATACCCC-CTCTATATATAAATACA-TAAAAT---------TGTAT-------TTATA-TA-TA-GAGGGGGTAT---AC-ATAT-CACCCT-TACC----ACAC-A-ATTTA-CGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTNTAAT---T----GTA-TATT------TTACTT--TACGNNNCTACTANATTAACATATT----CTAGAATGATT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AAATTAACTGTTTTAACTGATGTGCCACGCAAGGATTCACTTCTAAGAAACGTATCGGTGACAAAGCAAGACGAATTTTTATAATGTACATGTACGTCAATATATAAAAATATAGGT
Unaligned ( gi|13 ): AATTTAACTGGATTTAACTGATATGCCTCGGAAGAATTAACTTAGAAACGTGCTGCTGTCAGAGCAAGACCAATTTGTCAATGAGGTCTGTATATAAATATA
Unaligned ( gi|15 ): AATTAACTGTAACTGATGATTTACTTAGAAACGCACCTGTGACAAAACGAGACGAATTTTGAAAATGTATGTCTTCATATAAAAATAAATGTTAATG
Unaligned ( gi|16 ): CAGGGTTTTGACACAATCTGAGCAAACTGTATATTATACATAGTATATAGGAGTGCTCATATATGCTATATACACTAGTTTGCTCAGATTGTG
Unaligned ( gi|21 ): ATCACATAGAATAGATTATACATGCACATAATTGGTATGATTGT
Unaligned ( gi|24 ): ACAGGGTTTTGACACAATCTGAGCAAGCTAGTGCATATAT
Unaligned ( gi|25 ): GGGTTTTGACACAATCTGAGCAAGCTAGCGTAT
Alignments
lowQualScore : 1 11 22222 11 11111111 111111 11111 2222222222 111111111 22222222 44444444444 3333333333 111 44444
lowQualScore : 7 3 11 11111 11 6 99999999 3 2 3 3 44 3 222222 44 44444 55 5 2 5555 4 3 1111111111 333333333 0 5 5 5 0 4 888 5 5 4 9999 4 4 4 66 4 4 4 4 4 9999 4 4 4 66 1 22222222 55555555555 4444444444 1 999 00000
lowQualScore : . . .. ..... .. . ........ . . . . .. . ...... .. ..... .. . . .... . . .......... ......... . . . . . . ... . . . .... . . . .. . . . . . .... . . . .. . ........ ........... .......... . ... .....
lowQualScore : 3 3 22 22222 22 7 55555555 6 9 1 1 22 3 777777 99 00000 55 0 4 9999 4 2 3333333333 666666666 1 0 0 0 2 5 888 0 0 4 4444 4 4 4 11 4 4 4 4 4 4444 4 4 4 99 0 00000000 00000000000 3333333333 0 000 33333
consensus : NNNNNNNNNNNNNATTTTTTTGAACTTTCGACAAATATAGTATGTTTAA-AGTACGAATC-ATA-GA--GTATG-TGT-A---C----CACA-GGCCTCTGAATTTCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GTAAGGGT-GATA-----TG--TATACCCC-CTCTATATATAAATACA-TAAAA--------T-TGTA--T-----TTATA-TA-TA-GAGGGGGTAT---AC-ATAT-CACCCT-TACC----ACAC-A-ATTTA-CGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTNTAAT---T----GTA-TATT------TTACTT--TACGNNNCTACTANATTAACATATT----CTAGAATGATT
Reference ( family-3102 ) : NNNNNNNNNNNNNATTTTTTTGAACTTTCGACAAATATAGTATGTTTAA-AGTACGAATC-ATA-GA--GTATG-TGT-A---C----CACA-GGCCTCTGAATTTCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GTAAGGGT-GATA-----TG--TATACCCC-CTCTATATATAAATACA-TAAAA--------T-TGTA--T-----TTATA-TA-TA-GAGGGGGTAT---AC-ATAT-CACCCT-TACC----ACAC-A-ATTTA-CGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTNTAAT---T----GTA-TATT------TTACTT--TACGNNNCTACTANATTAACATATT----CTAGAATGATT
gi|1 : ATCGATA-CA--GTATGATGT-A---TTTT-CACA-G-CCTCTGAAATTCTATCAGATAAG-C-GT-AA--ATTAT--T-G-----CAAGGGTTGATA-----TG--TATACCCT-CTCTATA---------G-TG-------------TGT---T-----TTATA-TA-TA-GAGAG--TTC---AC--TAT-CACCCT-TGCC----ACAT-A-ATTTA-CGGC--TTA---G-A-TAG-AAA-T----CCA-GA-GGACTGCT--GGTATA
gi|10 : cgacaaattataattgtgcatttataagttctatttgtatgtcacat-GACCTCTGAAATTCTACCA-ATAAG-ACGT-AA--AGTGTG-T---------AGATT---TA-----TG--TATAttaaaggtaaaattctgagggagaaatttgactgagattacatttatcgcaatagtatacagctggctttactgcagttattggaaaacttcgattatctcgagtataaatgttgaatacctt
gi|10 : gATAAG-ACG-TAAAG--------TGTGTAGAT-----TTATG-TA-TA-GA-----TGT---AC-ATAT-CACTCT-TACTTACTACAC-A-CTCTA-TGGC--TTA-TTG-A-TAG-AAA-TTCAGTCA-GA-GGCCTG-T--Ggatgtacatatcactcttacttactacacactctatggcttattgatagaaattcagtcagaggcctgtg
gi|12 : ggacctctgaaattctaccaACATATAAATACA-AAAAAAAAAGTTGT-TGCA--TACGCCTGGTG-TA-TA-GAGGGGG-AT---AT-ATAT-CACCCT-TACT----ACAC-A-TTTTA-TGGC--TCA-TTG-A-TAG-ATA-T----TCA-GA-GGCCTG-
gi|14 : A-ATAAG-CCGT-AA--AATGTG-T-ACGTAGTGAGGAT-GATA-----CA--TATACCCC-CTCTATATGTACATGTA-T
gi|14 : TTTGAATTTCTATCA-ATAAG-CCGTAAA--ATtcgtattttacggcttattgatagaaattcaaa
gi|17 : atacatgtacatatagagggggtatatgtatcatcctcactacgtacacattttacggcttatttcgtA--------T-CGTA--T-----T-ATA-TT-TA-AGAGGGATATTTGCC-ATAT-CACCCT-TACT----ACAC-ATGTTTA-
gi|18 : agtcgttgcatacct----CACA-AGCCTCTGAATTTCTACCA-ATAAA-CCTT-AA--AATGCG-T-G----GTAAGAGA-AGT------TG--TGTAC
gi|19 : tcaaat-A---C----CACA-GGAGTCTGAATTTCTATCA-ATACG-CC-------ATT--------------AG-------A-----TG--TGTATCCC-CTC----TGTAAATACA-Tc
gi|2 : acaATTTTTTTGAACTTTCGACAAATATAATATGTTTAA-AGTACGAATC-ATA-GG--GTATG-TGTGA---C----CACA-GGCCTCTGAATTCCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GTAAGGGT-GATA-----TG--TATACCCCCCTCTATATATAAATACA-TAAAA--------T-TGTA--T-----TTATA-TA-TA-GAGGGGGTAT---AT-ATAT-CACCCC-TACC----ACAC-A-ATTTA-CGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTGTAAT---T----GTA-TGTT------TTACTT--TTC-AGTCTACCAGATTAACATATT-----TAGAATGATTc
gi|20 : tccattgattattATGTTCAA-AATACAAATT-ATGCGA--GTACA-TGT-A---C-------A-GGCCTCTGAATTTCTATCA-ATA
gi|22 : atg---C----TACA-GACC---GATTTCCTATCA-ATAAG-CCGT-AA--ATTGTG-T-G----GT
gi|23 : GC--TTA-TTG-A-TAG-AAA-T----TCA-GA-AGCCTG-C--GGTTTGAT---T----
gi|3 : TC-ATATGACCGTGTG-TAT-ATATC----CACT-GGCCTCTGAATTTCTATCA-ATAAG-CCGT-AA--ATTAAG-T-G----GTAAGGtgca
gi|4 : CT-TACC----ACAC-A-AATTA-TGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-T--GGTATATTCTAT----GTA-TA---------TACTGAATAAAGACTTACTTAATTAATTTATTGAAATTAGAATGATTcatcgatgagttactgaataaaatttaccggtgtgtattttttttttttaataaattcatttgtacatgtgtataaagaaaacttcaccaacagtttttcaatgcgaaattataaattgccagtgtttcagaaactataacaaataatatatcatatatataatgatatatgatcacacacacag
gi|5 : ATATAGT--GTTTAAGAGAGTGAAC---TA-GT--GCAT--TGT-A---CATAGCACAAGGCCTCTGAATTC--ATCA-ATAAGCCCGT--A--ATTATGTT-G----GTAAGGG--GATA-----TG--TATACCCT-CTCT-TATAT---TACC-TG-------------TATA--T-----TTATATTA-TA-GAGAGGCTAT---ACAATAT-CACCAT-TACC----ACATGA-ATTTA-CGGC---TA-TTG-ACTAGAAAA-T----TCA-GA-GGCCTG-T---GTACAAC---T----GTttccaagtttgctactcgtcatcagaaaattcactgattttagggtatacactgggtacctctacaaaaaagcgtcaatcggcccctcctaaatggtgcgatcatatgtagcaagatgtacaaacaatcccaaacaataacata
gi|6 : ----CACA-GGCC-ATGACTTTCTATCA-ATAAG-CCGT-AA--ATTATG-TGG----GTAAGGGT-GATA-----TGCTTATACCCC-CTCTATAT-------CA-TAAAA--------TATGT---T-----TTATA-TATTACGGAGGGCTAT---AC-ATGTCCATCCTCTACC----ACAA-A-ATTTACCGGCCTTCACTTGCA-TAG-AAATT----TCACGACGGTCTG-T--Gcaattgattggattaaagtaaa
gi|7 : gcgAAA--------T--GTA--T-----TTATA-TA-TA-GAGGGGGTTA---AC-ATAT-CACCCT-TACC----ACAC-A-ATTTA-TGGC--TTA-TTG-A-TAG-AAA-T----TCA-GA-GGCCTG-TCAGGTCTCAT---TCAGAGCATTATTGACATATTACTT--TACGTTA-TACTACATTAA-A-AGT----CTAGAAaacctaactgtagtcgaatggcttagagataaat
gi|8 : aatatagacacagtcaagcattactttcctcttttcaaatgttttctcACA-GACCTCTGATTTCCTCTCA-ATAAG-CCGT-AAATATTGTG-TGG----GTAAGGGT-GATATACACTG--TATACCCC-CTTTATAatatttt
gi|9 : aaggattcacttagaaacgtatcggtgaaaaagcaagacaaatttttataatgtacgtctgcatataaaaatatagatcaatcacgggcctcTCTGAATTTTTATCA-ATAAG-CCAT-AA--AATGTG-T-A----GAAAGGGT-GATAT----TA--TATACCCT-CTCTATATATAAATACATTAAAA--------T-a
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): AAATTAACTGTTTTAACTGATGTGCCACGCAAGGATTCACTTCTAAGAAACGTATCGGTGACAAAGCAAGACGAATTTTTATAATGTACATGTACGTCAATATATAAAAATATAGGT
Unaligned ( gi|13 ): AATTTAACTGGATTTAACTGATATGCCTCGGAAGAATTAACTTAGAAACGTGCTGCTGTCAGAGCAAGACCAATTTGTCAATGAGGTCTGTATATAAATATA
Unaligned ( gi|15 ): AATTAACTGTAACTGATGATTTACTTAGAAACGCACCTGTGACAAAACGAGACGAATTTTGAAAATGTATGTCTTCATATAAAAATAAATGTTAATG
Unaligned ( gi|16 ): CAGGGTTTTGACACAATCTGAGCAAACTGTATATTATACATAGTATATAGGAGTGCTCATATATGCTATATACACTAGTTTGCTCAGATTGTG
Unaligned ( gi|21 ): ATCACATAGAATAGATTATACATGCACATAATTGGTATGATTGT
Unaligned ( gi|24 ): ACAGGGTTTTGACACAATCTGAGCAAGCTAGTGCATATAT
Unaligned ( gi|25 ): GGGTTTTGACACAATCTGAGCAAGCTAGCGTAT