lowQualScore : 11 11 66666666 1 11 1 33333333 111111111 1 1111111 1111111111 111111111 1111111111111 11111 1 11 2222222222
lowQualScore : 55 00 11111111 0 1 77 44 77 0 3 5 99 3 5 2 5 66666666 66 777777777 6 1 5 6 3 1 0000000 4444444444 333333333 6 555 8888888888888 44 3 66 6666 3 77 3 6 77777 2 333 0 4 22 33 8 1 1 1111111111 3 99 555555 1 2
lowQualScore : .. .. ........ . . .. .. .. . . . .. . . . . ........ .. ......... . . . . . . ....... .......... ......... . ... ............. .. . .. .... . .. . . ..... . ... . . .. .. . . . .......... . .. ...... . .
lowQualScore : 88 77 33333333 6 6 00 44 99 7 2 0 22 5 0 8 0 44444444 11 888888888 4 8 0 7 3 6 8888888 6666666666 333333333 8 888 3333333333333 66 1 22 5555 1 33 1 2 77777 1 555 0 0 66 44 3 4 4 0000000000 2 11 777777 4 1
consensus : AAAATGAGGTCTGCATTT--CGGAN-TTATTAGTCGGGGAAAGCTT----A-TATTTAATAGCCCCAG-ACTAGAACTA-GTGT--ACTGGGATGGATGGCCTAATCCAG-CGGGATT-TGCA-GCAC---TTT-CTTTCCAAT--T---------AAATAATGTAAACATAATACAGATACTGATGTTGCTTTTTTACTGAAA-ATTTTGTAAG-------TC----------GTAG---------TTATC---TA-------------C--AAAATCT-T-ATA----CT-TTGGCG-AGTAGA-A-AT----TTTGTA-AATG---GCGA-C-TAGAA--AT--TTTAAA-ATGGCGAC-C-A----G---AAATATTTCTAGGTCGCC------AT-TTA-GCGACCTGACAGCAGATGTGACTTGGAGCAC
Reference ( gi|3 ) : AAAATGAGGTCTGCATTT--CGGAA-TTATTAATCGGGGAAAGCTTT--TAATATTTAATATCCCCAG-ACTAGAACTA-ATGT--ACTGGGATGGATGGCCTACTCCAG-CGGGATT-TACA-GCA----TTT-CTTTCCAAT--T---------AAATAATGTAAAGATAATACAGATACTGATGTTGCTTTTTTACTGAAA-ATTTTGTAAG-------TC----------GTAG---------TTGTC---TA-------------C--AAAATCT-T-ATA----CT-TTGGCA-AGTAGA-A-AT----GTTGTA-AATG---GCGA-C-TAGAA--AT--TTTAAA-ATGGCGAC-C-A----G---AAATATTTCTAGGTCGCC------AT-TTA-GCGACCTGACAGCAGATGTGACTTGGAGCAC
gi|7 : AAAATGAGGTCTGCATTT--CGGAT-TTATTAGTCAGGGAAAGCTT-------ATTTAATAGCCCCAC-CCTAAAACTA-GTG----------------GCCTAATCCAG-CAGGTTT-TACA-GCA----CA--CTTT--------------------TAATATAAACATAAAACAGATACTGATGTTGCTTTTTTACTGAAA-ATTTTGTAAG-------TC----------GTAG---------TTATC---TA-------------C--AAAATCT-T-ATA----CT-TTGGCG-AGTAGA-A-AT----TTTGTA-AATG---GTGA-C-TAGAA--AT--TTTAAA-ATGGCGAC-C-A----G---AAATATTTCTAGGTCGCC------AT-TTA-GTGACCTGACAGCAGATGTGACTTGGAGCAC
gi|8 : AAAATGATGTCTGCATTTT-CGGAAATTATTAATCGTGGAAAGCTTGAATATTATTTAATAGCCCCAGTACTAGAACTA--TGT--ACTGGGATGG-TGGCCTAATCCA--CGGGATT-TACACGCA-----TT-CTTTCCAAT--T---------AAATAATGT-AACATAATACAGATACTGAT-TTGA--TTTTACTGAGA-ATTTTGTAAG-------TC----------GTG-----------TATC---TA-------------C--AAAA-CT-T-ATA----C--TTGGCG-AGTAAA-ATAT-----TTGTA-TAT----GCGA-C-TAGAA--AA--TTt
gi|21 : aAAAATGAGGTCTGCATTT--CGGAT-TTATTAGTTGGGGAAAGCT-------TATTTAAAAGCACCAG-CCTAGAACTA-GTGT--ACTGagtcagccattagtcacctgacgcaatgtggacttgacactg
gi|4 : aAAATGAGGTCTGCATTTTTCGGAT-TTAATAGTCGGGGAAAGCTG-------ATTTAAAAGCCCCAG-CATAGAATTA-GTGT--ACTGGGATGGATGGCCTAATCCAG-CGGG-TT-TACA-GCACCA-TTT-CTTTCCAAT--T---------AAATGATATAAACATAATACA--TACTGA-GTTGCCTTTTTACTGAAA-ATCTTGTAAG-------TT----------GTAG---------TTATC---TA-------------C--AAAATCT-T-TTA----CT-TTGGCG-AGTAGA-A-AT----TTTGTA-AATG---GCGA-C-TAGAA--AT--TTTAAA-ATGGCGAC-C-A----GA--AAATATTTTTAGGTCGCC------AT-TTACGCGACCTGACAGCAAATGCGACTTGGAGCAC
gi|5 : TGAGGTCTGCATTT--CGGAA-TTATTAATCGGGGAAAGCTTT---AATATTTAATAGCCCCAG-ACTAGAACTA-GTGT--ACT-GGATGGATGGCCTAATCCAGCCGGAATT-TACA-GCA----TTT-CTTTCCAAT--T---------AAATAATGTAAACATAATACAGATACTGATGTTGCTTTTTTACTGAAA-ATTTTGTAAG-------TC----------GTAG---------TTATC---TA-------------C--AAAATCT-T-ATA----CT-TTGGCG-AGTAGA-A-AT----GTTGTA-AATG---GCAA-C-TAG-A--AT--TTTAAA-ATGGCGAC-C-A----G---AAATATTTCTAGGTCGCC------AT-TTA-GCGACCTGACAGCAGATGTGACTTGGAGCAC
gi|6 : GGTCTGCATTT--CGGAA-TTATTAATCGGG-AAAGCTT-------ATTTAATAGCCCCAG-ACTAGAACTA-GTGT--ACTGGGATGGATGACCTAATCCAG-CGGGATTCTGTA-GCA----TTT-CTTTCCAAT--T---------AAATAATGTAAATATAATACAGATAATGATGTTGCTTTTTTACTGAAA-ATTTTGTAAG-------TT----------GTAG---------TTATC---TA-------------C--AAAATCT-T-ATA----CT-TTGGCG-AGTAGA-A-AT----GTTGTA-AATG---GCGA-C-TAAAA--AT--TTTAAA-ATGGCGAC-C-A----G---AAATATTTCTAGGTCGCC------AT-TTA-GCGACCTGACAGCAGATGTGACTTGGAGCAC
gi|9 : gatAAAGAATT--TA-TATTCAACATTC---G-ATTCGA-CTATATTTTAACTGGAGTGCAAGGCCC----------GGATT-T-------------T-CTTTCCCATACTCCGCGCTAAAAATAATGTAAACATAATACAGATACTGATGTTGCTTTTTTACTG-AA-ATTTTGTAAG-------TT----------GTAG---------TTATC---TA-------------C--AAAATCT-T-ATA----CT-TTGGCG-AGTAGA-A-AT----GTTGTA-AATG---GCGA-C-TAAAA--AT--TTTAAA-ATGGCGAC-C-A----G---AAATATTTCTAGGTCGCC------AT-TTA-GCGACCTGACAGCAGATGTGACTTGGAGCAC
gi|11 : TT-TGCA-GCACATTTTTACTTACTAGT--T---------AAATAAT----ACATAATGCATATACGGATGTTGCTTTTTCATCGAAAGATATT-CAAA-------TTAAAAAAAAAGGCAAAAACTTCCCTTATT---TA-------------CAAAAAATCT-TAAGA----CT-CTCTTT-ATTAGATA-ATTTTCCTTTTC-AATG---GCGA-G-TAGAA--AT--TTTGAATGTGGCGAG-T-A----G---AAATt
gi|2 : TT-TGCA-GCACATTTTTACTTACTAGT--T---------AAATAAT----ACATAATGCATATACGGATGTTGCTTTTTCATCGAAtt
gi|10 : gcagtgttccaagttgtgagtaaaacggttgaatttgcgaccagaaaatcatcaattttgcgattagagataatgatctagtcacattcatgaatgaaaaaaagggcatccagtaaaatgttataatcaagattggggggtttgaccaacaattttttcgtcttgctcaaaatagcatttgaaaccaatcataatagcaggaaaacaatgtttagggcacttcagatttgttagtcttaaaaatcagaatacaacttatgccagagtaaattcttattagcatacaacatgtTTTCCAGT--T---------AAA-ACCATAAAC-TAATACG--TA--G--GTTGTTTTTTAACTGAA-----TTAAAACAAAAACCTC----------GTTG---------TTTTT---TAAACTGAATTAAAAC--AAAACCTGT-GTAAGTCCTATTAACA-A----A-A-AC-----TTCTATCATG---GCGA-C-TAGAA---T--TTTCAA-ATGGCGAC-C-A----G---AAATATTTCTAAGTCACC------AT-CTT-ATGATTTGATAACAAACATGACTTAGGG
gi|19 : gaTGAAA-ATTTTATAAG-------TC----------GTAG---------TTAGC---TA-------------C--AAAATCT-T-ATA----CT-TTGGCA-AATAGA-A-AT----GTTGTA-AATG---GCGA-C-CAGAA--A
gi|12 : taccggGAAA-ATATTTCAAG-------TC----------GTAG---------TTATC---TA-------------C--AAAATCT-T-TTA----CT-GTGGCG-AGTAAA-A-AT----TTTGTA-AATG---ATGA-C-TAGAA--AT--TTTAAA-ATGGTGAC-C-A----G---AAATATTTCTAGGTCGCCATCGCTAT-TTA-GCGACCTGACAGCAGATATGACTTGGAGCAC
gi|13 : AAA-ATCTTACAAG-------TC-----------------------TTATT---TA-------------C--AAATTTT-T-TTA----CC-GTGACT-TGCACA-A-AT----TTTGTA-AATG---GTGA-C-TAGAA--AT--TTTGAA-ATGGCGAC-C-A----G---AAGTATTTTTAGGTCGCC------AT-TTA-GC-----GATAGCAAATGTGACTTCTAGCAt
gi|12 : -ATTTTAAAAT-------TT----------CTAG---------TCATCATTTA-------------C--AAAATTT-T--TA----C--TCGCCACAGTAAA-AGAT----TTTGTA-GATAACTACGA-C-TTGAA--ATA-TTTt
gi|17 : gaAAATTT-T-G-A----AT-GTGGCG-AGTAGA-A-AT----TTTGAA-AGTG---GTGG-C-TAGAA--AC--TTTAAA-ATAGCAAC-C-A----A---AAATATTTCTATTTCACC------AT-TTA-GTGA--------------TGACTTGGAACACggtgaccagaaatatttctaggtcgccatcgctatttagcgacctgacagcagatatgacttggagcact
gi|4 : GTA-AATG---GCGACC-TAAAAATAT--TTT----CTGGTCGC-C-ATTT-T---AAA-ATTTCTA-GTCGCC------AT-TTA-t
gi|5 : aaatgaggtctgcatttttcggatttaatagtcggggaaagctgatttaaaagccccagcatagaattagtgtactgggatggatggcctaatccagcgggtttacagcaccatttctttccaattaaatgatataaacataatacatactgagttgcctttttactgaaaatcttgtaagttgtagttatctacaaaatcttttactttggcgagtagaaattttgTA-AATG---GCGACC-TAGAA--ATA-TTT----CTGGTCGC-C-ATTTTA---AAA---TTCTA-GTTGCC------AT-TTA-gcgacctgacagcaaatgcgacttggagcac
gi|6 : tgaggtctgcatttcggaattattaatcggggaaagctttaatatttaatagccccagactagaactagtgtactggatggatggcctaatccagccggaatttacagcatttctttccaattaaataatgtaaacataatacagatactgatgttgcttttttactgaaaattttgtaagtcgtagttatctacaaaatcttatactttggcgagtagaaatgttgTA-AATG---GCGA-CCTAGAA--ATA-TTTC----TGGTCGC-C-A----TTTTAAA-ATTTTTAG-TCGCC------AT-TTA-gcgacctgacagcagatgtgacttggagcac
gi|7 : gatggtctgcatttcggaattattaatcgggaaagcttatttaatagccccagactagaactagtgtactgggatggatgacctaatccagcgggattctgtagcatttctttccaattaaataatgtaaatataatacagataatgatgttgcttttttactgaaaattttgtaagttgtagttatctacaaaatcttatactttggcgagtagaaatgttgTA-AATG---GCGACC-TAGAA--ATA-TTT----CTGGTCGC-C-ATTT-T---AAA-ATTTCTA-GTCACC------AT-TTA-gcgacctgacagcagatgtgacttggagcac
gi|9 : aaaatgaggtctgcatttcggatttattagtcagggaaagcttatttaatagccccaccctaaaactagtggcctaatccagcaggttttacagcacacttttaatataaacataaaacagatactgatgttgcttttttactgaaaattttgtaagtcgtagttatctacaaaatcttatactttggcgagtagaaattttgTA-AATG---GCGA-CCTAGAA--ATA-TTTC----TGGTCGC-C-A----TTTTAAA-ATTTTTAG-TCGCC------AT-TTA-gtgacctgacagcagatgtgacttggagcact
gi|13 : aaagaatttatattcaacattcgattcgactatattttaactggagtgcaaggcccggattttctttcccatactccgcgctaaaaataatgtaaacataatacagatactgatgttgcttttttactgaaattttgtaagttgtagttatctacaaaatcttatactttggcgagtagaaatgttgTA-AATG---GCGACC-TAAAA--ATACTTC-----TGGTCGC-C-ATTT-C---AAA-ATTTCTA-GTCACC------AT-TTA-gcgacctgacagcagatgtgacttggagcact
gi|12 : aaaatcttacaagtcttatttacaaatttttttaccgtgacttgcacaaattttgATG---GCGACC-TAGAA--ATA-TTT----CTGGTCAC-C-ATTT-T---AAA-ATTTCTA-GTCATC------AT-TTA-gcgatagcaaatgtgacttctagcat
gi|10 : gaaaatatttcaagtcgtagttatctacaaaatcttttactgtggcgagtaaaaattttgAA--AT--CATAAG-ATGGTGAC-TTA----G---AAATATTTCT-GGTCGCC------AT-TTcgctatttagcgacctgacagcagatatgacttggagcact
gi|18 : gatttccagttaaaaccataaactaatacgtaggttgttttttaactgaattaaaacaaaaacctcgttgttttttaaactgaattaaaacaaaacctgtgtaagtcctattaacaaaaacttctatcatggcgactagaattttc--TTTAAA-TTGGTGAC-C-A----G---AA-TATGTCTAGGTCGCC------ATGTTA-gataacaaacatgacttaggg
gi|18 : --TTTAAC-ATGGCGAC-CTA----G---ACATA-TTCT-GGTCACCA-----AT-TTA-aactaaatgattttatttactactgattagcgacctgacagcagatgcgacttggagt
gi|5 : ttAA-ATGGCGAC-CTA----G---AAATATTTCT-GGTCGCC------AT-TTctaaatgattttatttactactgattagcgacctgacagcagatgcgacttggagt
gi|6 : tgaggtctgcatttcggaattattaatcggggaaagctttaatatttaatagccccagactagaactagtgtactggatggatggcctaatccagccggaatttacagcatttctttccaattaaataatgtaaacataatacagatactgatgttgcttttttactgaaaattttgtaagtcgtagttatctacaaaatcttatactttggcgagtagaaatgttgtaaatggcaactagaattttaAA-ATGGCGAC-CTA----G---AAATATTTCT-GGTCGCC------AT-TTagcgacctgacagcagatgtgacttggagcac
gi|4 : gatggtctgcatttcggaattattaatcgggaaagcttatttaatagccccagactagaactagtgtactgggatggatgacctaatccagcgggattctgtagcatttctttccaattaaataatgtaaatataatacagataatgatgttgcttttttactgaaaattttgtaagttgtagttatctacaaaatcttatactttggcgagtagaaatgttgtaaatggcgactaaaaattttaAA-ATGGCGAC-CTA----A---AAATATTTTCTGGTCGCC------AT-TTagcgacctgacagcagatgtgacttggagcac
gi|7 : aaatgaggtctgcatttttcggatttaatagtcggggaaagctgatttaaaagccccagcatagaattagtgtactgggatggatggcctaatccagcgggtttacagcaccatttctttccaattaaatgatataaacataatacatactgagttgcctttttactgaaaatcttgtaagttgtagttatctacaaaatcttttactttggcgagtagaaattttgtaaatggcgactagaaattttaAA-ATGGCGAC-CTA----G---AAATATTTCT-GGTCGCC------AT-TTacgcgacctgacagcaaatgcgacttggagcac
gi|9 : aaaatgaggtctgcatttcggatttattagtcagggaaagcttatttaatagccccaccctaaaactagtggcctaatccagcaggttttacagcacacttttaatataaacataaaacagatactgatgttgcttttttactgaaaattttgtaagtcgtagttatctacaaaatcttatactttggcgagtagaaattttgtaaatggtgactagaaattttaAA-ATGGCGAC-CTA----G---AAATATTTCT-GGTCGCC------AT-TTagtgacctgacagcagatgtgacttggagcact
gi|13 : aaagaatttatattcaacattcgattcgactatattttaactggagtgcaaggcccggattttctttcccatactccgcgctaaaaataatgtaaacataatacagatactgatgttgcttttttactgaaattttgtaagttgtagttatctacaaaatcttatactttggcgagtagaaatgttgtaaatggcgactaaaaattttaAA-ATGGCGAC-CTA----A---AAATACTTCT-GGTCGCC------AT-TTagcgacctgacagcagatgtgacttggagcact
gi|17 : aaaatcttacaagtcttatttacaaatttttttaccgtgacttgcacaaattttgtaaatggtgactagaaattttgAA-ATGGTGAAAT-A----G---AAATATTTTT-GGTTGCT------AT-TTagcgatagcaaatgtgacttctagcat
gi|12 : aaattttgaatgtggcgagtagaaattttgaaagtggtggctagaaacttta-ATGGCGAC-CTA----G---AAATATTTCT-GGTCACC------AT-TTagtgatgacttggaacact
gi|18 : gaaaatatttcaagtcgtagttatctacaaaatcttttactgtggcgagtaaaaattttgtaaatgatgactagaaatttta-TTA-GCGACCTGACAGCAGATGCGACTTGGAGcgctatttagcgacctgacagcagatatgacttggagcact
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): CCGCACTCCAAGTCACGAGTAAAATGATCGCATTGATGACCAGAAAATTGATTTTGCAAGTAGAGATTTTAATTAAGTTGCATTTTTGTGAGTAGAGAAAATTCGAACATCCAGTAAAATCTTATAATCGGGATGGGAAGATCGAATAAATATTTTTTAGTCTTGGTCAAAGCAGCGCTTGAAAGCAATCAATATGGTGATAAAAATGAGGTTTAGGGCACTTCAGATTTATTATTACATGTAGTAAAAAGCAGAAGCCTTTGCTTAGTTCCCAGAAGCTAAACCGTAAATATGCAGGATGGCCCAATACAAAACATCTTATGCCAGAGTAACTACTTATTAGCATCCAGCATATTTTACAGCACATTTCTATTC
Unaligned ( gi|14 ): GCTGCTCCAAGTTGCGAAGTAAAACGGTCGCATATTTGCGACTAGAGATTAAATAAGTCGCATTTTCGCGAGTGGAAGAAAATCCGGCCATGGACTCTCCATTACAATATAATCGCATCAAAGTTTGAATAGAATATT
Unaligned ( gi|15 ): ACTTAATGTTAGCATCCAGCATGATTTCGGTTAAAAACATAACACTAATACGTATGTTGTTGTTTTTTAAACTAAATTAAAACAAAACCTCGTAAGTCCTATTAACAAACACTTCTGTCAT
Unaligned ( gi|16 ): GAGGTTGTCATTAGTAGTAAAAAAGCAGAAGCTGAACCTTCAGCCTTAAAGTTCCCAGAAGCTACTGTAATACTAGTATATACAGGGATGGTCCAATGCAATACAACTTAT
Unaligned ( gi|20 ): ATACAGGATTGGCCTAATGCAATACAATTTGTGCCAGATGTAACAACTTGCCTTGCATGTACGGCATATTTCTATTC
Unaligned ( gi|22 ): TTAATGAAGTCACATTTTCATAAGTGGAGGAAATTTGGGCATCCAGTAAAATTTTATAA
Unaligned ( gi|23 ): CTTAATGTTAGCATCCAGCATGATTTCAGTTAAAACCATAACACTAATACG
Alignments
lowQualScore : 111 11 3333333333333 11111 3333 111111111 1111111111 11111111 1111111111 111111111
lowQualScore : 555 00 55 3333333333333 5 1 3 1 44444 5 5 5 5 5555 8 55 666666666 4 5 3333333333 3 22222222 1 4444444444 333333333 44 3 3 6666 3 3 999999 3 3 3 999999 3 3 0 3
lowQualScore : ... .. .. ............. . . . . ..... . . . . .... . .. ......... . . .......... . ........ . .......... ......... .. . . .... . . ...... . . . ...... . . . .
lowQualScore : 666 66 44 9999999999999 0 4 0 4 33333 7 4 0 0 7777 9 55 000000000 8 0 5555555555 3 11111111 0 6666666666 333333333 66 1 1 5555 1 1 888888 1 1 3 666666 1 1 2 3
consensus : AAAATGAGGTCT---GCATTT--CGGAN-TTATTAGTCGGGGAAAGCTT---A-----TATTTAATAGCCCCAG-ACTAGAACTAGTGTACTGGGATGGATGGCCTA-----ATCCAG-CGGGATT-TACA-GCAC---TTT-CTTTCCAAT--T---------AAATAATGTAAACATAATACAGATACTGATGTTGCTTTTTTACTGAA----------A-A--------TTTTGTAAGTC----------GTAG---------TTATCTAC--AAAATCT-T-ATA----CT-TTGGCGAGTAGA-AAT-T----TTGTAAATGGCGACTAGAAATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GCGACCTGACAGCAGATGT-GACTTGGAGCAC
Reference ( family-3093 ) : AAAATGAGGTCT---GCATTT--CGGAN-TTATTAGTCGGGGAAAGCTT---A-----TATTTAATAGCCCCAG-ACTAGAACTAGTGTACTGGGATGGATGGCCTA-----ATCCAG-CGGGATT-TGCA-GCAC---TTT-CTTTCCAAT--T---------AAATAATGTAAACATAATACAGATACTGATGTTGCTTTTTTACTGAA----------A-A--------TTTTGTAAGTC----------GTAG---------TTATCTAC--AAAATCT-T-ATA----CT-TTGGCGAGTAGA-AAT-T----TTGTAAATGGCGACTAGAAATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GCGACCTGACAGCAGATGT-GACTTGGAGCAC
gi|1 : AAAATGAGGTTTAGGGCACTT--CAGAT-TTATTA
gi|10 : ccgcactccaagtcacgagtaaaatgatcgcattgatgaccagaaaattgattttgcaagtagagattttaattaagttgcatttttgtgagtagagaaaattcgaacatccagtaaaatcttataatcgggatgggaagatcgaataaatattttttagtcttggtcaaagcagcgcttgaaagcaatcaatatggtgataTTTCCAGT--T---------AAA-ACCATAAAC-TAATACG--TA--G--GTTGTTTTTTAACTGAATTAAAACAAAA-ACCTCGTTGTTTTTTAAACT----------G-AA---------TTAAA-AC--AAAACCTGT-GTAAGTCCTATTAACAAA---A-ACT-T----CTATCA-TGGCGACTAGAA-TTTTCAA-ATGGCGACCAG-AAATATTTCTAAGTC-ACC------AT-CTT-ATGATTTGATAACAAACAT-GACTTAGGGttacatgtagtaaaaagcagaagcctttgcttagttcccagaagctaaaccgtaaatatgcaggatggcccaatacaaaacatcttatgccagagtaactacttattagcatccagcatattttacagcacatttctattc
gi|11 : gaTT-TGCA-GCACATTTTTACTTACTAGT--T---------AAATAAT----ACATAATGCATATACGGATGTTGCTTTTTCATCGAA----------AGA--------TATT-CAAATTAAAAAAAAAGGCAAAAACTTCCCTTATTTACAAAAAATCT-TAAGA----CT-CTCTTTATTAGATAAT-TTTCCTTTTCAATGGCGAGTAGAAATTTTGAATGTGGCGAGTAG-AAAT
gi|12 : GAA----------A-A--------TATTTCAAGTC----------GTAG---------TTATCTAC--AAAATCT-T-TTA----CT-GTGGCGAGTAAA-AAT-T----TTGTAAATGATGACTAGAAATTTTAAA-ATGGTGACCAG-AAATATTTCTAGGTC-GCCATCGCTAT-TTA-GCGACCTGACAGCAGATAT-GACTTGGAGCACtt
gi|13 : AA----------A-A--------TCTTACAAGTC-----------------------TTATTTAC--AAATTTT-T-TTA----CC-GTGACTTGCACA-AAT-T----TTGTAAATGGTGACTAGAAATTTTGAA-ATGGCGACCAG-AAGTATTTTTAGGTC-GCC------AT-TTA-GC-----GATAGCAAATGT-GACTTCTAGCAt
gi|17 : AAATTT-T-G-A----AT-GTGGCGAGTAGA-AAT-T----TTGAAAGTGGTGGCTAGAAACTTTAAA-ATAGCAACCAA-AAATATTTCTATTTC-ACC------AT-TTA-GTGA--------------T-GACTTGGAACACt
gi|18 : TTTAAA-TTGGTGACCAG-AA-TATGTCTAGGTC-GCC------ATGTTA-t
gi|18 : -TTA-GCGACCTGACAGCAGATGC-GACTTGGAGaactaaatgattttatttactactgattagcgacctgacagcagatgcgacttggagt
gi|19 : tttaaattggtgaccagaatatgtctaggtcgccatgttaaactaaatgattttatttactactgaTGAA----------A-A--------TTTTATAAGTC----------GTAG---------TTAGCTAC--AAAATCT-T-ATA----CT-TTGGCAAATAGA-AAT-G----TTGTAAATGGCGACCAGAAAt
gi|2 : taccggAAAACAATGTTTAGGGCACTT--CAGAT-TTGTTAGTC---------TT---A-----AA---AAT-----CAG-AATACAACT--TATGCCAGAGTAAATT-CTTATTAGCATACAA-CATGTTT-TGCA-GCACATTTTTACTTACTAGT--T---------AAATAAT----ACATAATGCATATACGGATGTTGCTTTTTCATCGAA----------
gi|21 : gcagtgttccaagttgtgagtaaaacggttgaatttgcgaccagaaaatcatcaattttgcgattagagataatgatctagtcacattcatgaatgaaaaaaagggcatccagtaaaatgttataatcaagattggggggtttgaccaacaattttttcgtcttgctcaaaatagcatttgaaaccaatcataatagcaggAAAATGAGGTCT---GCATTT--CGGAT-TTATTAGTTGGGGAAAGCT----------TATTTAAAAGCACCAG-CCTAGAACTAGTGTACTG
gi|3 : aAAAATGAGGTCT---GCATTT--CGGAA-TTATTAATCGGGGAAAGCTTTTAA-----TATTTAATATCCCCAG-ACTAGAACTAATGTACTGGGATGGATGGCCTA-----CTCCAG-CGGGATT-TACA-GCA----TTT-CTTTCCAAT--T---------AAATAATGTAAAGATAATACAGATACTGATGTTGCTTTTTTACTGAA----------A-A--------TTTTGTAAGTC----------GTAG---------TTGTCTAC--AAAATCT-T-ATA----CT-TTGGCAAGTAGA-AAT-G----TTGTAAATGGCGACTAGAAATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GCGACCTGACAGCAGATGT-GACTTGGAGCAC
gi|4 : AAATGAGGTCT---GCATTTTTCGGAT-TTAATAGTCGGGGAAAGCTG---A-----T--TTAAAAGCCCCAG-CATAGAATTAGTGTACTGGGATGGATGGCCTA-----ATCCAG-CGGG-TT-TACA-GCACCA-TTT-CTTTCCAAT--T---------AAATGATATAAACATAATACA--TACTGA-GTTGCCTTTTTACTGAA----------A-A--------TCTTGTAAGTT----------GTAG---------TTATCTAC--AAAATCT-T-TTA----CT-TTGGCGAGTAGA-AAT-T----TTGTAAATGGCGACTAGAAATTTTAAA-ATGGCGACCAGAAAATATTTTTAGGTC-GCC------AT-TTACGCGACCTGACAGCAAATGC-GACTTGGAGCAC
gi|5 : TGAGGTCT---GCATTT--CGGAA-TTATTAATCGGGGAAAGCTTTA-A-----TATTTAATAGCCCCAG-ACTAGAACTAGTGTACTGG-ATGGATGGCCTA-----ATCCAGCCGGAATT-TACA-GCA----TTT-CTTTCCAAT--T---------AAATAATGTAAACATAATACAGATACTGATGTTGCTTTTTTACTGAA----------A-A--------TTTTGTAAGTC----------GTAG---------TTATCTAC--AAAATCT-T-ATA----CT-TTGGCGAGTAGA-AAT-G----TTGTAAATGGCAACTAG-AATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GCGACCTGACAGCAGATGT-GACTTGGAGCAC
gi|6 : GGTCT---GCATTT--CGGAA-TTATTAATCGGG-AAAGCTT---A-----T--TTAATAGCCCCAG-ACTAGAACTAGTGTACTGGGATGGATGACCTA-----ATCCAG-CGGGATTCTGTA-GCA----TTT-CTTTCCAAT--T---------AAATAATGTAAATATAATACAGATAATGATGTTGCTTTTTTACTGAA----------A-A--------TTTTGTAAGTT----------GTAG---------TTATCTAC--AAAATCT-T-ATA----CT-TTGGCGAGTAGA-AAT-G----TTGTAAATGGCGACTAAAAATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GCGACCTGACAGCAGATGT-GACTTGGAGCAC
gi|7 : gatAAAATGAGGTCT---GCATTT--CGGAT-TTATTAGTCAGGGAAAGCTT---A-----T--TTAATAGCCCCAC-CCTAAAACTAGTG--------------GCCTA-----ATCCAG-CAGGTTT-TACA-GCAC---A---CTTT--------------------TAATATAAACATAAAACAGATACTGATGTTGCTTTTTTACTGAA----------A-A--------TTTTGTAAGTC----------GTAG---------TTATCTAC--AAAATCT-T-ATA----CT-TTGGCGAGTAGA-AAT-T----TTGTAAATGGTGACTAGAAATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GTGACCTGACAGCAGATGT-GACTTGGAGCAC
gi|8 : AAAATGATGTCT---GCATTTT-CGGAAATTATTAATCGTGGAAAGCTT---GAATATTATTTAATAGCCCCAGTACTAGAACTA-TGTACTGGGATGG-TGGCCTA-----ATCCA--CGGGATT-TACACGCA-----TT-CTTTCCAAT--T---------AAATAATGTAA-CATAATACAGATACTGAT-TTGATTTT--ACTGAG----------A-A--------TTTTGTAAGTC----------GTG-----------TATCTAC--AAAA-CT-T-ATA----CT-T-GGCGAGTA-A-AATAT----TTGTATATG-CGACTAGAAA------------------------ATT----AGTCAGCC------AT-T-A-GTCACCTGAC-GCA-ATGTGGACTTGt
gi|9 : aAT---TTT-CTTTCCCATACTCCGCGCTAAAAATAATGTAAACATAATACAGATACTGATGTTGCTTTTTTACTG-A----------A-A--------TTTTGTAAGTT----------GTAG---------TTATCTAC--AAAATCT-T-ATA----CT-TTGGCGAGTAGA-AAT-G----TTGTAAATGGCGACTAAAAATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GCGACCTGACAGCAGATGT-GACTTGGAGCACacactg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GCTGCTCCAAGTTGCGAAGTAAAACGGTCGCATATTTGCGACTAGAGATTAAATAAGTCGCATTTTCGCGAGTGGAAGAAAATCCGGCCATGGACTCTCCATTACAATATAATCGCATCAAAGTTTGAATAGAATATT
Unaligned ( gi|15 ): ACTTAATGTTAGCATCCAGCATGATTTCGGTTAAAAACATAACACTAATACGTATGTTGTTGTTTTTTAAACTAAATTAAAACAAAACCTCGTAAGTCCTATTAACAAACACTTCTGTCAT
Unaligned ( gi|16 ): GAGGTTGTCATTAGTAGTAAAAAAGCAGAAGCTGAACCTTCAGCCTTAAAGTTCCCAGAAGCTACTGTAATACTAGTATATACAGGGATGGTCCAATGCAATACAACTTAT
Unaligned ( gi|20 ): ATACAGGATTGGCCTAATGCAATACAATTTGTGCCAGATGTAACAACTTGCCTTGCATGTACGGCATATTTCTATTC
Unaligned ( gi|22 ): TTAATGAAGTCACATTTTCATAAGTGGAGGAAATTTGGGCATCCAGTAAAATTTTATAA
Unaligned ( gi|23 ): CTTAATGTTAGCATCCAGCATGATTTCAGTTAAAACCATAACACTAATACG
Alignments
lowQualScore : 111 11 3333333333333 11111 3333 111111111 1111111111 11111111 1111111111 111111111
lowQualScore : 555 00 55 3333333333333 5 1 3 1 44444 5 5 5 5 5555 8 55 666666666 4 5 3333333333 3 22222222 1 4444444444 333333333 44 3 3 6666 3 3 999999 3 3 3 999999 3 3 0 3
lowQualScore : ... .. .. ............. . . . . ..... . . . . .... . .. ......... . . .......... . ........ . .......... ......... .. . . .... . . ...... . . . ...... . . . .
lowQualScore : 666 66 44 9999999999999 0 4 0 4 33333 7 4 0 0 7777 9 55 000000000 8 0 5555555555 3 11111111 0 6666666666 333333333 66 1 1 5555 1 1 888888 1 1 3 666666 1 1 2 3
consensus : AAAATGAGGTCT---GCATTT--CGGAN-TTATTAGTCGGGGAAAGCTT---A-----TATTTAATAGCCCCAG-ACTAGAACTAGTGTACTGGGATGGATGGCCTA-----ATCCAG-CGGGATT-TACA-GCAC---TTT-CTTTCCAAT--T---------AAATAATGTAAACATAATACAGATACTGATGTTGCTTTTTTACTGAA----------A-A--------TTTTGTAAGTC----------GTAG---------TTATCTAC--AAAATCT-T-ATA----CT-TTGGCGAGTAGA-AAT-T----TTGTAAATGGCGACTAGAAATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GCGACCTGACAGCAGATGT-GACTTGGAGCAC
Reference ( family-3093 ) : AAAATGAGGTCT---GCATTT--CGGAN-TTATTAGTCGGGGAAAGCTT---A-----TATTTAATAGCCCCAG-ACTAGAACTAGTGTACTGGGATGGATGGCCTA-----ATCCAG-CGGGATT-TACA-GCAC---TTT-CTTTCCAAT--T---------AAATAATGTAAACATAATACAGATACTGATGTTGCTTTTTTACTGAA----------A-A--------TTTTGTAAGTC----------GTAG---------TTATCTAC--AAAATCT-T-ATA----CT-TTGGCGAGTAGA-AAT-T----TTGTAAATGGCGACTAGAAATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GCGACCTGACAGCAGATGT-GACTTGGAGCAC
gi|1 : AAAATGAGGTTTAGGGCACTT--CAGAT-TTATTA
gi|10 : ccgcactccaagtcacgagtaaaatgatcgcattgatgaccagaaaattgattttgcaagtagagattttaattaagttgcatttttgtgagtagagaaaattcgaacatccagtaaaatcttataatcgggatgggaagatcgaataaatattttttagtcttggtcaaagcagcgcttgaaagcaatcaatatggtgataTTTCCAGT--T---------AAA-ACCATAAAC-TAATACG--TA--G--GTTGTTTTTTAACTGAATTAAAACAAAA-ACCTCGTTGTTTTTTAAACT----------G-AA---------TTAAA-AC--AAAACCTGT-GTAAGTCCTATTAACAAA---A-ACT-T----CTATCA-TGGCGACTAGAA-TTTTCAA-ATGGCGACCAG-AAATATTTCTAAGTC-ACC------AT-CTT-ATGATTTGATAACAAACAT-GACTTAGGGttacatgtagtaaaaagcagaagcctttgcttagttcccagaagctaaaccgtaaatatgcaggatggcccaatacaaaacatcttatgccagagtaactacttattagcatccagcatattttacagcacatttctattc
gi|11 : gaTT-TGCA-GCACATTTTTACTTACTAGT--T---------AAATAAT----ACATAATGCATATACGGATGTTGCTTTTTCATCGAA----------AGA--------TATT-CAAATTAAAAAAAAAGGCAAAAACTTCCCTTATTTACAAAAAATCT-TAAGA----CT-CTCTTTATTAGATAAT-TTTCCTTTTCAATGGCGAGTAGAAATTTTGAATGTGGCGAGTAG-AAAT
gi|12 : GAA----------A-A--------TATTTCAAGTC----------GTAG---------TTATCTAC--AAAATCT-T-TTA----CT-GTGGCGAGTAAA-AAT-T----TTGTAAATGATGACTAGAAATTTTAAA-ATGGTGACCAG-AAATATTTCTAGGTC-GCCATCGCTAT-TTA-GCGACCTGACAGCAGATAT-GACTTGGAGCACtt
gi|13 : AA----------A-A--------TCTTACAAGTC-----------------------TTATTTAC--AAATTTT-T-TTA----CC-GTGACTTGCACA-AAT-T----TTGTAAATGGTGACTAGAAATTTTGAA-ATGGCGACCAG-AAGTATTTTTAGGTC-GCC------AT-TTA-GC-----GATAGCAAATGT-GACTTCTAGCAt
gi|17 : AAATTT-T-G-A----AT-GTGGCGAGTAGA-AAT-T----TTGAAAGTGGTGGCTAGAAACTTTAAA-ATAGCAACCAA-AAATATTTCTATTTC-ACC------AT-TTA-GTGA--------------T-GACTTGGAACACt
gi|18 : TTTAAA-TTGGTGACCAG-AA-TATGTCTAGGTC-GCC------ATGTTA-t
gi|18 : -TTA-GCGACCTGACAGCAGATGC-GACTTGGAGaactaaatgattttatttactactgattagcgacctgacagcagatgcgacttggagt
gi|19 : tttaaattggtgaccagaatatgtctaggtcgccatgttaaactaaatgattttatttactactgaTGAA----------A-A--------TTTTATAAGTC----------GTAG---------TTAGCTAC--AAAATCT-T-ATA----CT-TTGGCAAATAGA-AAT-G----TTGTAAATGGCGACCAGAAAt
gi|2 : taccggAAAACAATGTTTAGGGCACTT--CAGAT-TTGTTAGTC---------TT---A-----AA---AAT-----CAG-AATACAACT--TATGCCAGAGTAAATT-CTTATTAGCATACAA-CATGTTT-TGCA-GCACATTTTTACTTACTAGT--T---------AAATAAT----ACATAATGCATATACGGATGTTGCTTTTTCATCGAA----------
gi|21 : gcagtgttccaagttgtgagtaaaacggttgaatttgcgaccagaaaatcatcaattttgcgattagagataatgatctagtcacattcatgaatgaaaaaaagggcatccagtaaaatgttataatcaagattggggggtttgaccaacaattttttcgtcttgctcaaaatagcatttgaaaccaatcataatagcaggAAAATGAGGTCT---GCATTT--CGGAT-TTATTAGTTGGGGAAAGCT----------TATTTAAAAGCACCAG-CCTAGAACTAGTGTACTG
gi|3 : aAAAATGAGGTCT---GCATTT--CGGAA-TTATTAATCGGGGAAAGCTTTTAA-----TATTTAATATCCCCAG-ACTAGAACTAATGTACTGGGATGGATGGCCTA-----CTCCAG-CGGGATT-TACA-GCA----TTT-CTTTCCAAT--T---------AAATAATGTAAAGATAATACAGATACTGATGTTGCTTTTTTACTGAA----------A-A--------TTTTGTAAGTC----------GTAG---------TTGTCTAC--AAAATCT-T-ATA----CT-TTGGCAAGTAGA-AAT-G----TTGTAAATGGCGACTAGAAATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GCGACCTGACAGCAGATGT-GACTTGGAGCAC
gi|4 : AAATGAGGTCT---GCATTTTTCGGAT-TTAATAGTCGGGGAAAGCTG---A-----T--TTAAAAGCCCCAG-CATAGAATTAGTGTACTGGGATGGATGGCCTA-----ATCCAG-CGGG-TT-TACA-GCACCA-TTT-CTTTCCAAT--T---------AAATGATATAAACATAATACA--TACTGA-GTTGCCTTTTTACTGAA----------A-A--------TCTTGTAAGTT----------GTAG---------TTATCTAC--AAAATCT-T-TTA----CT-TTGGCGAGTAGA-AAT-T----TTGTAAATGGCGACTAGAAATTTTAAA-ATGGCGACCAGAAAATATTTTTAGGTC-GCC------AT-TTACGCGACCTGACAGCAAATGC-GACTTGGAGCAC
gi|5 : TGAGGTCT---GCATTT--CGGAA-TTATTAATCGGGGAAAGCTTTA-A-----TATTTAATAGCCCCAG-ACTAGAACTAGTGTACTGG-ATGGATGGCCTA-----ATCCAGCCGGAATT-TACA-GCA----TTT-CTTTCCAAT--T---------AAATAATGTAAACATAATACAGATACTGATGTTGCTTTTTTACTGAA----------A-A--------TTTTGTAAGTC----------GTAG---------TTATCTAC--AAAATCT-T-ATA----CT-TTGGCGAGTAGA-AAT-G----TTGTAAATGGCAACTAG-AATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GCGACCTGACAGCAGATGT-GACTTGGAGCAC
gi|6 : GGTCT---GCATTT--CGGAA-TTATTAATCGGG-AAAGCTT---A-----T--TTAATAGCCCCAG-ACTAGAACTAGTGTACTGGGATGGATGACCTA-----ATCCAG-CGGGATTCTGTA-GCA----TTT-CTTTCCAAT--T---------AAATAATGTAAATATAATACAGATAATGATGTTGCTTTTTTACTGAA----------A-A--------TTTTGTAAGTT----------GTAG---------TTATCTAC--AAAATCT-T-ATA----CT-TTGGCGAGTAGA-AAT-G----TTGTAAATGGCGACTAAAAATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GCGACCTGACAGCAGATGT-GACTTGGAGCAC
gi|7 : gatAAAATGAGGTCT---GCATTT--CGGAT-TTATTAGTCAGGGAAAGCTT---A-----T--TTAATAGCCCCAC-CCTAAAACTAGTG--------------GCCTA-----ATCCAG-CAGGTTT-TACA-GCAC---A---CTTT--------------------TAATATAAACATAAAACAGATACTGATGTTGCTTTTTTACTGAA----------A-A--------TTTTGTAAGTC----------GTAG---------TTATCTAC--AAAATCT-T-ATA----CT-TTGGCGAGTAGA-AAT-T----TTGTAAATGGTGACTAGAAATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GTGACCTGACAGCAGATGT-GACTTGGAGCAC
gi|8 : AAAATGATGTCT---GCATTTT-CGGAAATTATTAATCGTGGAAAGCTT---GAATATTATTTAATAGCCCCAGTACTAGAACTA-TGTACTGGGATGG-TGGCCTA-----ATCCA--CGGGATT-TACACGCA-----TT-CTTTCCAAT--T---------AAATAATGTAA-CATAATACAGATACTGAT-TTGATTTT--ACTGAG----------A-A--------TTTTGTAAGTC----------GTG-----------TATCTAC--AAAA-CT-T-ATA----CT-T-GGCGAGTA-A-AATAT----TTGTATATG-CGACTAGAAA------------------------ATT----AGTCAGCC------AT-T-A-GTCACCTGAC-GCA-ATGTGGACTTGt
gi|9 : aAT---TTT-CTTTCCCATACTCCGCGCTAAAAATAATGTAAACATAATACAGATACTGATGTTGCTTTTTTACTG-A----------A-A--------TTTTGTAAGTT----------GTAG---------TTATCTAC--AAAATCT-T-ATA----CT-TTGGCGAGTAGA-AAT-G----TTGTAAATGGCGACTAAAAATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GCGACCTGACAGCAGATGT-GACTTGGAGCACacactg
blockSeqs : AGG TT AA TGAATATTAT T G G A . C A C C CATT A AC CCGCGCTAA G T . G . T AAAAAAAAAG AAACTTCCC AA . A . . T TTTCC T A A ATCGCT G C G
blockSeqs : . T T TTTAATAT . A G A . . A . . CCA . . . A T . . . A . . . . . . . . AT . . . . . . .
blockSeqs : . . T TTAATAT . G G A . . A . . C . . . G G . . . A . . . . . . . . T . . . . . . .
blockSeqs : . . A TAT . G G A . . T . . T . . . G G . . . G . . . . . . . . T . . . . . . .
blockSeqs : . . T GAT . G . . . . A . . . . . . A G . . . G . . . . . . . . T . . . . . . .
blockSeqs : . . A TAT . G . . . . . . . . . . . G G . . . G . . . . . . . . G . . . . . . .
blockSeqs : . . A TAT . . . . . . . . G G . . . G . . . . . . . . G . . . . . . .
blockSeqs : . . T . . . . . G . . . G . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . G . . . . . . . . G . . . . . . .
blockSeqs : . . . G . . . . . . . . G . . . . . . .
blockSeqs : . . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . G . . . .
blockSeqCons : *** TAT********** ***** C*** ********** ******** ****
originalCons : AAAATGAGGTCT---GCATTT--CGGAN-TTATTAGTCGGGGAAAGCTT---A-----TATTTAATAGCCCCAG-ACTAGAACTAGTGTACTGGGATGGATGGCCTA-----ATCCAG-CGGGATT-TACA-GCAC---TTT-CTTTCCAAT--T---------AAATAATGTAAACATAATACAGATACTGATGTTGCTTTTTTACTGAA----------A-A--------TTTTGTAAGTC----------GTAG---------TTATCTAC--AAAATCT-T-ATA----CT-TTGGCGAGTAGA-AAT-T----TTGTAAATGGCGACTAGAAATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GCGACCTGACAGCAGATGT-GACTTGGAGCAC
finalCons : AAAATGAGGTCT---GCATTT--CGGAN-TTATTAGTCGGGGAAAGCTTAT----------TTAATAGCCCCAG-ACTAGAACTAGTGTACTGGGATGGATGGCCTA-----ATCCAG-CGGGATT-TACA-GCAC---TTT-CTTTCCAAT--T---------AAATAATGTAAACATAATACAGATACTGATGTTGCTTTTTTACTGAA----------A-A--------TTTTGTAAGTC----------GTAG---------TTATCTAC--AAAATCT-T-ATA----CT-TTGGCGAGTAGA-AAT-T----TTGTAAATGGCGACTAGAAATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GCGACCTGACAGCAGATGT-GACTTGGAGCAC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GCTGCTCCAAGTTGCGAAGTAAAACGGTCGCATATTTGCGACTAGAGATTAAATAAGTCGCATTTTCGCGAGTGGAAGAAAATCCGGCCATGGACTCTCCATTACAATATAATCGCATCAAAGTTTGAATAGAATATT
Unaligned ( gi|15 ): ACTTAATGTTAGCATCCAGCATGATTTCGGTTAAAAACATAACACTAATACGTATGTTGTTGTTTTTTAAACTAAATTAAAACAAAACCTCGTAAGTCCTATTAACAAACACTTCTGTCAT
Unaligned ( gi|16 ): GAGGTTGTCATTAGTAGTAAAAAAGCAGAAGCTGAACCTTCAGCCTTAAAGTTCCCAGAAGCTACTGTAATACTAGTATATACAGGGATGGTCCAATGCAATACAACTTAT
Unaligned ( gi|20 ): ATACAGGATTGGCCTAATGCAATACAATTTGTGCCAGATGTAACAACTTGCCTTGCATGTACGGCATATTTCTATTC
Unaligned ( gi|22 ): TTAATGAAGTCACATTTTCATAAGTGGAGGAAATTTGGGCATCCAGTAAAATTTTATAA
Unaligned ( gi|23 ): CTTAATGTTAGCATCCAGCATGATTTCAGTTAAAACCATAACACTAATACG
Alignments
lowQualScore : 111 11 111111 44444444444444444 11111 3333 111111111 1111111111 11111111 1111111111 111111111
lowQualScore : 555 00 55 222222 0 11111111111111111 9999 0 777 1 0 4 0 0 22222 5 5 5 5 5555 8 55 666666666 4 5 3333333333 3 22222222 1 4444444444 333333333 44 3 3 6666 3 3 999999 3 3 3 999999 3 3 0 3
lowQualScore : ... .. .. ...... . ................. .... . ... . . . . . ..... . . . . .... . .. ......... . . .......... . ........ . .......... ......... .. . . .... . . ...... . . . ...... . . . .
lowQualScore : 666 66 44 888888 1 11111111111111111 6666 1 888 9 8 5 1 1 55555 7 4 0 0 7777 9 55 000000000 8 0 5555555555 3 11111111 0 6666666666 333333333 66 1 1 5555 1 1 888888 1 1 3 666666 1 1 2 3
consensus : AAAATGAGGTCT---GCATTT--CGGAN-TTATTA------GTCGGGGAAAGC--------TT-------ATTTAATAGCCCCAG-A--CTAGAACT---AGTGTACTGGGATGGATGGCCTA-----ATCCAG-CGGGATT-TACA-GCAC---TTT-CTTTCCAAT--T---------AAATAATGTAAACATAATACAGATACTGATGTTGCTTTTTTACTGAA----------A-A--------TTTTGTAAGTC----------GTAG---------TTATCTAC--AAAATCT-T-ATA----CT-TTGGCGAGTAGA-AAT-T----TTGTAAATGGCGACTAGAAATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GCGACCTGACAGCAGATGT-GACTTGGAGCAC
Reference ( family-3093 ) : AAAATGAGGTCT---GCATTT--CGGAN-TTATTA------GTCGGGGAAAGC--------TT-------ATTTAATAGCCCCAG-A--CTAGAACT---AGTGTACTGGGATGGATGGCCTA-----ATCCAG-CGGGATT-TACA-GCAC---TTT-CTTTCCAAT--T---------AAATAATGTAAACATAATACAGATACTGATGTTGCTTTTTTACTGAA----------A-A--------TTTTGTAAGTC----------GTAG---------TTATCTAC--AAAATCT-T-ATA----CT-TTGGCGAGTAGA-AAT-T----TTGTAAATGGCGACTAGAAATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GCGACCTGACAGCAGATGT-GACTTGGAGCAC
gi|1 : AAAATGAGGTTTAGGGCACTT--CAGAT-TTATTATTACATGTAGTAAAAAGCAGAAGCCTTT-------GCTTAGT--TCCCAG-AAGCTA-AACCGTAAATATGC----A-GGATGGCCCA-----ATACA
gi|10 : ccgcactccaagtcacgagtaaaatgatcgcattgatgaccagaaaattgattttgcaagtagagattttaattaagttgcatttttgtgagtagagaaaattcgaacatccagtaaaatcttataatcgggatgggaagatcgaataaatattttttagtcttggtcaaagcagcgcttgaaagcaatcaatatggtgataTTTCCAGT--T---------AAA-ACCATAAAC-TAATACG--TA--G--GTTGTTTTTTAACTGAATTAAAACAAAA-ACCTCGTTGTTTTTTAAACT----------G-AA---------TTAAA-AC--AAAACCTGT-GTAAGTCCTATTAACAAA---A-ACT-T----CTATCA-TGGCGACTAGAA-TTTTCAA-ATGGCGACCAG-AAATATTTCTAAGTC-ACC------AT-CTT-ATGATTTGATAACAAACAT-GACTTAGGGaaacatcttatgccagagtaactacttattagcatccagcatattttacagcacatttctattc
gi|11 : gaTT-TGCA-GCACATTTTTACTTACTAGT--T---------AAATAAT----ACATAATGCATATACGGATGTTGCTTTTTCATCGAA----------AGA--------TATT-CAAATTAAAAAAAAAGGCAAAAACTTCCCTTATTTACAAAAAATCT-TAAGA----CT-CTCTTTATTAGATAAT-TTTCCTTTTCAATGGCGAGTAGAAATTTTGAATGTGGCGAGTAG-AAAT
gi|12 : GAA----------A-A--------TATTTCAAGTC----------GTAG---------TTATCTAC--AAAATCT-T-TTA----CT-GTGGCGAGTAAA-AAT-T----TTGTAAATGATGACTAGAAATTTTAAA-ATGGTGACCAG-AAATATTTCTAGGTC-GCCATCGCTAT-TTA-GCGACCTGACAGCAGATAT-GACTTGGAGCACtt
gi|13 : AA----------A-A--------TCTTACAAGTC-----------------------TTATTTAC--AAATTTT-T-TTA----CC-GTGACTTGCACA-AAT-T----TTGTAAATGGTGACTAGAAATTTTGAA-ATGGCGACCAG-AAGTATTTTTAGGTC-GCC------AT-TTA-GC-----GATAGCAAATGT-GACTTCTAGCAt
gi|17 : AAATTT-T-G-A----AT-GTGGCGAGTAGA-AAT-T----TTGAAAGTGGTGGCTAGAAACTTTAAA-ATAGCAACCAA-AAATATTTCTATTTC-ACC------AT-TTA-GTGA--------------T-GACTTGGAACACt
gi|18 : TTTAAA-TTGGTGACCAG-AA-TATGTCTAGGTC-GCC------ATGTTA-t
gi|18 : -TTA-GCGACCTGACAGCAGATGC-GACTTGGAGaactaaatgattttatttactactgattagcgacctgacagcagatgcgacttggagt
gi|19 : tttaaattggtgaccagaatatgtctaggtcgccatgttaaactaaatgattttatttactactgaTGAA----------A-A--------TTTTATAAGTC----------GTAG---------TTAGCTAC--AAAATCT-T-ATA----CT-TTGGCAAATAGA-AAT-G----TTGTAAATGGCGACCAGAAAt
gi|2 : taccggAAAACAATGTTTAGGGCACTT--CAGAT-TTGTTA------GTC----------------------------TTAAAAATC--AG-A--ATACAACT-----TATGCCAGAGTAAATT-CTTATTAGCATACAA-CATGTTT-TGCA-GCACATTTTTACTTACTAGT--T---------AAATAAT----ACATAATGCATATACGGATGTTGCTTTTTCATCGAA----------
gi|21 : gcagtgttccaagttgtgagtaaaacggttgaatttgcgaccagaaaatcatcaattttgcgattagagataatgatctagtcacattcatgaatgaaaaaaagggcatccagtaaaatgttataatcaagattggggggtttgaccaacaattttttcgtcttgctcaaaatagcatttgaaaccaatcataatagcaggAAAATGAGGTCT---GCATTT--CGGAT-TTATTA------GTTGGGGAAAGC--------TT-------ATTTAAAAGCACCAG-C--CTAGAACT---AGTGTACTG
gi|3 : aAAAATGAGGTCT---GCATTT--CGGAA-TTATTA------ATCGGGGAAAGC--------TTTTAAT--ATTTAATATCCCCAG-A--CTAGAACT---AATGTACTGGGATGGATGGCCTA-----CTCCAG-CGGGATT-TACA-GCA----TTT-CTTTCCAAT--T---------AAATAATGTAAAGATAATACAGATACTGATGTTGCTTTTTTACTGAA----------A-A--------TTTTGTAAGTC----------GTAG---------TTGTCTAC--AAAATCT-T-ATA----CT-TTGGCAAGTAGA-AAT-G----TTGTAAATGGCGACTAGAAATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GCGACCTGACAGCAGATGT-GACTTGGAGCAC
gi|4 : AAATGAGGTCT---GCATTTTTCGGAT-TTAATA------GTCGGGGAAAGC--------TG-------ATTTAAAAGCCCCAG-C--ATAGAATT---AGTGTACTGGGATGGATGGCCTA-----ATCCAG-CGGG-TT-TACA-GCACCA-TTT-CTTTCCAAT--T---------AAATGATATAAACATAATACA--TACTGA-GTTGCCTTTTTACTGAA----------A-A--------TCTTGTAAGTT----------GTAG---------TTATCTAC--AAAATCT-T-TTA----CT-TTGGCGAGTAGA-AAT-T----TTGTAAATGGCGACTAGAAATTTTAAA-ATGGCGACCAGAAAATATTTTTAGGTC-GCC------AT-TTACGCGACCTGACAGCAAATGC-GACTTGGAGCAC
gi|5 : TGAGGTCT---GCATTT--CGGAA-TTATTA------ATCGGGGAAAGC--------TTTAAT---ATTTAATAGCCCCAG-A--CTAGAACT---AGTGTACTGG-ATGGATGGCCTA-----ATCCAGCCGGAATT-TACA-GCA----TTT-CTTTCCAAT--T---------AAATAATGTAAACATAATACAGATACTGATGTTGCTTTTTTACTGAA----------A-A--------TTTTGTAAGTC----------GTAG---------TTATCTAC--AAAATCT-T-ATA----CT-TTGGCGAGTAGA-AAT-G----TTGTAAATGGCAACTAG-AATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GCGACCTGACAGCAGATGT-GACTTGGAGCAC
gi|6 : GGTCT---GCATTT--CGGAA-TTATTA------ATCGGG-AAAGC--------TT-------ATTTAATAGCCCCAG-A--CTAGAACT---AGTGTACTGGGATGGATGACCTA-----ATCCAG-CGGGATTCTGTA-GCA----TTT-CTTTCCAAT--T---------AAATAATGTAAATATAATACAGATAATGATGTTGCTTTTTTACTGAA----------A-A--------TTTTGTAAGTT----------GTAG---------TTATCTAC--AAAATCT-T-ATA----CT-TTGGCGAGTAGA-AAT-G----TTGTAAATGGCGACTAAAAATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GCGACCTGACAGCAGATGT-GACTTGGAGCAC
gi|7 : gatAAAATGAGGTCT---GCATTT--CGGAT-TTATTA------GTCAGGGAAAGC--------TT-------ATTTAATAGCCCCAC-C--CTAAAACT---AGTG--------------GCCTA-----ATCCAG-CAGGTTT-TACA-GCAC---A---CTTT--------------------TAATATAAACATAAAACAGATACTGATGTTGCTTTTTTACTGAA----------A-A--------TTTTGTAAGTC----------GTAG---------TTATCTAC--AAAATCT-T-ATA----CT-TTGGCGAGTAGA-AAT-T----TTGTAAATGGTGACTAGAAATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GTGACCTGACAGCAGATGT-GACTTGGAGCAC
gi|8 : AAAATGATGTCT---GCATTTT-CGGAAATTATTA------ATCGTGGAAAGC--------TTGAATATTATTTAATAGCCCCAGTA--CTAGAACT---A-TGTACTGGGATGG-TGGCCTA-----ATCCA--CGGGATT-TACACGCA-----TT-CTTTCCAAT--T---------AAATAATGTAA-CATAATACAGATACTGAT-TTGATTTT--ACTGAG----------A-A--------TTTTGTAAGTC----------GTG-----------TATCTAC--AAAA-CT-T-ATA----CT-T-GGCGAGTA-A-AATAT----TTGTATATG-CGACTAGAAA------------------------ATT----AGTCAGCC------AT-T-A-GTCACCTGAC-GCA-ATGTGGACTTGt
gi|9 : aAT---TTT-CTTTCCCATACTCCGCGCTAAAAATAATGTAAACATAATACAGATACTGATGTTGCTTTTTTACTG-A----------A-A--------TTTTGTAAGTT----------GTAG---------TTATCTAC--AAAATCT-T-ATA----CT-TTGGCGAGTAGA-AAT-G----TTGTAAATGGCGACTAAAAATTTTAAA-ATGGCGACCAG-AAATATTTCTAGGTC-GCC------AT-TTA-GCGACCTGACAGCAGATGT-GACTTGGAGCACacactg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GCTGCTCCAAGTTGCGAAGTAAAACGGTCGCATATTTGCGACTAGAGATTAAATAAGTCGCATTTTCGCGAGTGGAAGAAAATCCGGCCATGGACTCTCCATTACAATATAATCGCATCAAAGTTTGAATAGAATATT
Unaligned ( gi|15 ): ACTTAATGTTAGCATCCAGCATGATTTCGGTTAAAAACATAACACTAATACGTATGTTGTTGTTTTTTAAACTAAATTAAAACAAAACCTCGTAAGTCCTATTAACAAACACTTCTGTCAT
Unaligned ( gi|16 ): GAGGTTGTCATTAGTAGTAAAAAAGCAGAAGCTGAACCTTCAGCCTTAAAGTTCCCAGAAGCTACTGTAATACTAGTATATACAGGGATGGTCCAATGCAATACAACTTAT
Unaligned ( gi|20 ): ATACAGGATTGGCCTAATGCAATACAATTTGTGCCAGATGTAACAACTTGCCTTGCATGTACGGCATATTTCTATTC
Unaligned ( gi|22 ): TTAATGAAGTCACATTTTCATAAGTGGAGGAAATTTGGGCATCCAGTAAAATTTTATAA
Unaligned ( gi|23 ): CTTAATGTTAGCATCCAGCATGATTTCAGTTAAAACCATAACACTAATACG