lowQualScore : 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 222 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5555555 11 444 777 444 1 2 11 1 333333333333333333333333333333333333333333333333333333333333333333333333333333333 11 111 111111111 111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1111 22222222222222 1111111 1 2222222222 666666 1 1 11
lowQualScore : 22 111 7 6 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 8888888 22 888 6 000 888 444 5 2 0 6 88 9 66 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222 66 22 222 1 0 9 5 333333333 8 2 0 555 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5555 888 44444444444444 4 2222222 9 1 2 5 3333333333 8 9 8 3 2 4 444444 5 0 3 6 77 6
lowQualScore : .. ... . . ................................................................................................................... ....... .. ... . ... ... ... . . . . .. . .. . ................................................................................. .. .. ... . . . . ......... . . . ... ........................................................................................................................................ .... ... .............. . ....... . . . . .......... . . . . . . ...... . . . . .. .
lowQualScore : 00 000 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0000000 00 000 0 000 000 000 5 5 0 0 55 0 22 8 111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 11 222 9 9 8 2 333333333 9 0 4 000 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 6666 444 33333333333333 0 1111111 2 9 2 4 2222222222 0 6 0 2 5 0 000000 0 5 0 0 55 0
consensus : TGATGTCATTATTAATACACTCTATCATTACTACATCGAGTTAGGAAAAACATAATTGAACAATGACGATGAAGAAGTTAGAGTAAA-AATCCCGAAATTCTAAAATGCCCCTTAATACACACTCCTTGTGT---------------CTTCTCTTG-AATCAAAATTCTTATGATAAAAGTGAGCAT---TCATCCATCAACATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCANCNATCAACACCCNACTACCTGNTAGTGTCGGATTCACAAAA------------------------C----ACGA--ATT------ACA----CAAAG--CACTAN--TAA--AAT-------GA--CACGAACAA---TTAGATTGTCAAATTTTCGGGACGACCCGTCCCTT-CTTCAGGA-CA-ANCGAAAA---G-TT---ACA--AA-AT--GGT---T---A--TAAGATA-----A--AAT--AC--ATT---AG---TAC----------GC----G-CA-TAAA----TAAAAC----TAGC-----------ACTAC----AAGCGTATT-T------------ACACTGCAAA-T---C---GCATGTTTATTGTTTTTGGCTTGCAAATC--NATG-CTATCT-ACGGAGCGANTNAAATTCTGACGCGTCGTACAATCCCANANAACGTCACAAAACATGNGGAACTTCTGAA
Reference ( gi|2 ) : TGATGTCATTATCGATAAAATCAATCACTACTAC------TTAG---------------ACAGTGACAGCAGATAA---AGAGGAAATAATTCTGAAATTCTAAAATGATGTATATTACACAATCCTTGTGTACATTTTTTTGAATGTCTCTCTTGAAATC--AATCTTTATGAT-ATAGTGAACATCCATCATCCAT-ATCATCCATCCATCCTTCCATCCTCGTTCCATCCTCCATCAATCAACACTCGA-TATCTGTTAGTGGCGGATTCACAAAA------------------------C----ATGA--ATT------ACA----CAACG--CGCTAT--TAA--AGT-------GA--CACGAACAA---TTAGAATGTCAAATCTTTGGAACGACCCATCCCTT-CTCCAGTA-CATATTGAAAA--TAATT---ACA--AA-AT--GGT---T---A--TAAGATA-----A--AAT--AT--ATT--CAG---TAC----------AT----G-CA-TAGA----TAAATT----TAGC-----------ACTAC----AAGCACATT-T------------ACACTGCAAA-T---T---ACTTGTTTAGTATTTTTGGATTGTAAATC--TGTG-TTGTTT-ACGGAGCGACTTAAATTCCAA-AAGTCCTATAATTCCAGAAAGCGTCACAAAACATTGGGGATTTCTGAAATG
gi|1 : TGATGTCATTATTAATACACTCTATCATTACTACATCGAGTTAGGAAAAACATAATTGAACAATGACGATGAAGAAGTTAGAGTAAA-AATCCCGAAATTCTAAAATGCCCCTTAATACACACTCCTTGTGT---------------CTTCTCTTG-AATCAAAATTCTTATGATAAAAGTGAGCAT---TCATCCATCAACATCC
gi|1 : catttcctgttgtttagaaataaatgcatctctTTCATCCATCAACATCCGA-TACCTGTTAGTG-CGGATTCACAAAATTGATACAAGGTTAATGGTTAACAC----ATGA--ATT------ACC----CAAAG--CACTAA--CCA--CGT-------GA--CACTAACTA---TTAGATTGTCAAATCTTTGGGA-----------TT-CTTCAGGA-CAAAATGAAAA--TGCTT---TCA--TA-TT----T---T---ACATAAGATA-----A--AAT--ATGCACTACCGGGTATAC----------AT----G-TA-TAGA----TAAAAT----TAGC-----------ACTAA----AAGTTCAGT-T------------GGACTGCAAA-T---C---ACATGTTTATTATTTTTGGATTGTAAATC--TGTG-TTTTCT-ATGGAGCGACTAAAATTCTGACGCGTCGTATAATTCCAAACAACGTCACAAAACATGTGGAATTTCTGgatacctgttagtgcggattcacaaaattgatacaaggttaatggttaacacatgaattacccaaagcactaaccacgtgacactaactattagattgtcaaatctttgggattcttcaggacaaaatgaaaatgctttcatattttacataagataaaatatgcactaccgggtatacatgtatagataaaattagcactaaaagttcagttggactgcaaatcacatgtttattatttttggattgtaaatctgtgttttctatggagcgactaaaattctgacgcgtcgtataattccaaacaacgtcacaaaacatgtggaatttctg
gi|5 : catttcctgttgtttagaaataaatgcatctcttgatgtcattattaatacactctatcattactacatcgagttaggaaaaacataattgaacaatgacgatgaagaagttagagtaaaaatcccgaaattctaaaatgccccttaatacacactccttgtgtcttctcttgaatcaaaattcttatgataaaagtgagcaCCAGTAATTAAC-CTCTACTACCTGG-AGCGATAACTTCCCAA--------------------------C----ATAA--ATC------ACA----C--------------TAA--AATTCCCAACGA--CACGATCAA---CTGGATTGTCAAATTTTCGGGAAGTCCTCTACCTTCCTCGAG-A-CA-ATTGAAAAGGTTTTT---ATA--AA-AT--GGC---T---A--AAAAACA-----A-----------ATT--TAA---AAC----------GCCA--G-CACTA-------AAACTACACTAAT-----------TCTAC----AAGCATATC-A------------ACACCGT----T---TTGGGTTTGTTT-GTATT
gi|7 : ttttatttcaacgtataGTGTCGGA--CACACAA------------------------C----GTGG--AT-------ACAAGGTCAACTACCGGAAT--TAA--AA--------GA--C-----CAA---T-AAAATGTCAAATTGTCGGGACGACCTGTCCCTT-C
gi|10 : TGTCGGATGCACAAAA------------------------TTGATACAA--GTTCGTCAAACA----CAA-G--AATTAT----A--AAT--------A--CA-AAGCAA---TTAAATTGTCGAATTTTCGGGACGACATGTCCCTT-CTTCAGTG-TATATC----A--T--TT---GTAGTAA-ATTAGGT----------TAGGATG-----G--AAC--AC--ATT--gtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttacttgtaacactacaaattacatatttattgttttggactggctaattactgagcgaat
gi|4 : ctgatAAA------------------------C----ACGAGAATT------ACA----GAAAG--CACTAAAATAACCAAC-------GATCCACGAGTAAA--TTAGATTGTCAAATTTTTGGGACGGCCTATCCCTTCCTCTTGC--CAT-TTGA-------------ACG--AA-AA--GGT---TTACA--TGAGATG-----GCTAATTAAT--GTT---AG---CAC---------------------TAAAACTGTACACT----GAAT-----------A-TACA---AAAAATATT-T------------ACACTGCAAA-T---T---ACATGTTTATTGTGTTCGACTTGCTAATC--AATG-CTTTCT-AGGGAGC
gi|9 : agaatactaagttccaacacatccggcgatacgtaaaagtgtcagatccacaatgcagtcaaggtcTAC--TAA--AAT-------GA--CA--AACGA---TTTGAGC-----ATTTTCGGA-CGACCCGTCCCTT-CTTC-GTAACAAAC-GAAAA---AGTTTGCATA--AG-AT--AGG---C---A---ACGATCC----A--AAT--AA--ATTAGCAC---TAC----------AA----A-CA-CAC-----TAAAT---------------------CTAC----AAACGTGTT-T------------ACACTGCAAA-CGCAT---GCTTATTa
gi|8 : taaag--AAT-------GA--CACAAACAA---T---GCTGCTAAAGTTTTGGAATGGCCCATCCCTT-TTTCAGGA-TA-AACGAAAA--AAGTT---ACAT-AATAT--GGTGAAT---A---AAAACG-----G--AGT--AC--ATT--AAA---CACGAGACAAGAAATAATAG-CA-CA-A----TAA-------TAGC-----------ACAAC----AAGTGCATT----------------ATT-CAAAGT---T---TCTTGTg
gi|6 : accaacatgacc--AAT-------GA--CAAAAACAATTTTTAAAATTTCAAATATTTGG---GACCTGTCCCTA-ATTTAGGA-CA-AGCGGAAA----------------------GG----T---A--T-ACATA-----A--GAT--AT--G-----------------------------G-AA-TAAA----TACAAC----TAGC-----------ACTACATCTAAAC-TATTCT------------GCAAAGCAAA-T---C---ACATGTTTATTGTTTT
gi|3 : cgtacaagacaatctgacaagggaatatatagtaggactgcaacagcactaaaatgaccA--CACAAACAA---TTACATTGTAAAATTTTTGAGAC------TCCCTT-CTTTAGGA-CA-AATGAAGA--GGTTT---AC--------------------A--TAAGATAG----A--AAT--AC--AT-----G---TAT----------GT----A--A-TAAA----TAAAAC----TAGCACAACAGCTAAACTAC----ATGTATATC-TATGAAAGTATACACACTGTAAA-T---C---ACATATATATTGTTTTTGGCTTGCAATTC--AATGCTTATTTAACAGAGTGAATTAactt
gi|14 : ccaact---A--CAAGATATCTGAA--AAT--AT---------G---TAT----------AC----GATA-TAAA----TAAAAC----TAGC-----------ACTAC----ATCTAGAAT-T------------ACACTGCAAA-T---A---ACAGGTTTATTGTTTTggacacatcttatttgtccaaaggactggtccctgtataataatatttggaaataagcaggtggatgagtaaatttaattacacttaatt
gi|15 : ACT-T------------GCACTGCAAA-G---T---GCATGTTTATTGCTTTTGGCCTGCAGATCAATATG-CTATCT-AAGGAaagcttg
gi|7 : acaaaattaatgt------------ACACTACAAA-T---T---ACATATTTATTG-TTTTGGACTG-----------G-CTAATT-ACTGAGCGA
gi|16 : gtgtcggacacacaacgtggatacaaggtcaactaccggaattaaaagaccaataaaatgtcaaattgtcgggacgacctgtcccttcgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttacttgtaACAATCCCATAAAACGTCACAAAACATGGGAAACTTCTGAAat
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): CACTTCCTGTCGTCACATTGGATGCGTCACTTCCTGTCATTATCAGTACATTCTATTACAACTGCATGGAGTTAGAAAAAAAAACTATTGAAGAAGGACAGCGAACAA
Unaligned ( gi|12 ): AAAAGTTTACATAAGATAAATATAGAATAAAAATAAAACTAGCACTTTATCATCTAAACTAAATCCACAAAAAAGAACACATTCTTTATTCCGTATTTATTTTT
Unaligned ( gi|13 ): AAAGTTTACATAAGATAAATATAGAATAAATAAAACTAGCACTATATCATCTAAACTAAATCCACAAAAGAGAACACATTCTTTATTCCGTATTTATTTT
Alignments
lowQualScore : 111111111111111
lowQualScore : 111 444444444444 222 2 222222222222222 2 11 1 333 1 5555555555555555555555555555555555555555555555555555 444444444444444 1111 2222222 111111 33333333 1111 11 999999999999999999999999999999999999999999999999999999999999999999999999999 1111111 3333333333333333333333333 1111 11 222222222222 111 111 111
lowQualScore : 1 3 1 333 555555555555 222 6 111 3 0 55555 4 2 555555555555555 0 88 4 5 555 5 4 7777777777777777777777777777777777777777777777777777 0 777 3 1 666666666666666 4444 0 99 0000000 5 444444 22222222 55 66 4 8888 3 1 1 55 4 8888 1 00 66 4 333333333333333333333333333333333333333333333333333333333333333333333333333 0 4 4444444 4 0000000000000000000000000 3333 777 00 4 000000000000 2 0 222 777 6 1 1 1 222 999 0 1 1 1 0
lowQualScore : . . . ... ............ ... . ... . . ..... . . ............... . .. . . ... . . .................................................... . ... . . ............... .... . .. ....... . ...... ........ .. .. . .... . . . .. . .... . .. .. . ........................................................................... . . ....... . ......................... .... ... .. . ............ . . ... ... . . . . ... ... . . . . .
lowQualScore : 0 7 0 000 333333333333 777 7 000 0 0 00000 0 5 000000000000000 0 55 0 5 000 0 0 8888888888888888888888888888888888888888888888888888 2 888 3 5 333333333333333 2222 7 22 8888888 0 666666 55555555 55 44 0 5555 2 6 4 33 4 3333 0 66 11 4 222222222222222222222222222222222222222222222222222222222222222222222222222 7 4 4444444 4 6666666666666666666666666 9999 888 11 0 555555555555 4 3 555 888 7 0 0 0 333 000 7 0 0 0 7
consensus : TGATGTCATTATCGATACANTCTATCACTACTACAT-GAGTTAGGAAAAA-A-A--ATTGAACAATGACGGCGAANAAGTTAGAGNAAATAATCCCGAAATTCTAAAATGNCGCNTANTACACANTCCTTGTGTACATTTTTTTGAATGCCTCTCTTGAAATCAAAATCCTTATGATANAAGTGAGCATCCATCATCCATCANCATCCGNCNNCCGTTNNNNCNNNNTCNCANNCTCCATTAAT-CAACAC--TCGAC--TACCTGNTAGTGTCGGATTCACAA--------------AAC----ACGA--ATT------ACAC-AA-AGC--ACTAN--CGA--AATGA--CACGAACAA-TT----AGATTGTCAAATTTTCGGGACGACCCGTCCCTTCTTCAGGAC-A----AACG--AAA--A-G----TT---ACA--AA-AT--GGT---T--ATAAGAT-A-----AAATA--CGTT-A------GTACGCG---C-ATAAATAA-AAC-------TA-GC-----------A------C------TAC----A---AGCGTATT-T------------ACACTGCAAATCACATGTTTATTGTTTTTGGCTTGCAAATC--TATGC-TNTCT-ACGGAGCGANTTAAATTCTAACGCGTCGTA--TAATTCCANAAAACGTCACAAAACATGGGGAATTTCTGAA
Reference ( family-3075 ) : TGATGTCATTATTAATACACTCTATCATTACTACATCGAGTTAGGAAAAACATA--ATTGAACAATGACGATGAAGAAGTTAGAGTAAA-AATCCCGAAATTCTAAAATGCCCCTTAATACACACTCCTTGTGT---------------CTTCTCTTGAA-TCAAAATTCTTATGATAAAAGTGAGCAT---TCATCCATCAACATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCANCNAT-CAACAC--CCNAC--TACCTGNTAGTGTCGGATTCACAA--------------AAC----ACGA--ATT------ACAC-AA-AGC--ACTAN--TAA--AATGA--CACGAACAA-TT----AGATTGTCAAATTTTCGGGACGACCCGTCCCTTCTTCAGGAC-A----ANCG--AAA--A-G----TT---ACA--AA-AT--GGT---T--ATAAGAT-A-----AAATA--CATT-A------GTACGCG---C-ATAAATAA-AAC-------TA-GC-----------A------C------TAC----A---AGCGTATT-T------------ACACTGCAAATCGCATGTTTATTGTTTTTGGCTTGCAAATC--NATGC-TATCT-ACGGAGCGANTNAAATTCTGACGCGTCGTA--CAATCCCANANAACGTCACAAAACATGNGGAACTTCTGAA
gi|1 : TGATGTCATTATTAATACACTCTATCATTACTACATCGAGTTAGGAAAAACATA--ATTGAACAATGACGATGAAGAAGTTAGAGTAAA-AATCCCGAAATTCTAAAATGCCCCTTAATACACACTCCTTGTGT---------------CTTCTCTTGAA-TCAAAATTCTTATGATAAAAGTGAGCAT---TCATCCATCAACATCCGATACCTGTTAGTGCGGATTCACAAA----ATTGATACAA----------------GGTTAAT----GGTTAACA-----------------C----ATGA--ATT------ACCC-AA-AGC--ACTAA--CCA--CGTGA--CACTAACTA-TT----AGATTGTCAAATCTTTGGGA-----------TTCTTCAGGACAA----AATG--AAA--ATGC---TT---TCA--TA-TT----T---TACATAAGAT-A-----AAATATGCACT-ACCGGGTATACATG---T-ATAGATAA-AAT-------TA-GC-----------A------C------TAA----A---AGTTCAGT-T------------GGACTGCAAATCACATGTTTATTATTTTTGGATTGTAAATC--TGTGT-TTTCT-ATGGAGCGACTAAAATTCTGACGCGTCGTA--TAATTCCAAACAACGTCACAAAACATGTGGAATTTCTG
gi|10 : catttcctgttgtttagaaataaatgcatctctCTGAT--TGTCGGATGCACAA--------------AATTGATACAA--GTTCGTCAAACAC-AA--GA--ATTAT----A--AAT-A--CA-AAGCAA-TT----AAATTGTCGAATTTTCGGGACGACATGTCCCTTCTTCAGTGT-AT---ATC--------A-T----TT---GTAGTAA-ATTAGGT-------TAGGAT-G-----GAACA--CATT-
gi|11 : TGTCATTATCAGTACATTCTATTACAACTGCATGGAGTTAGAAAAAAAA-ACTATTGAAGAAGGACAGCGAACAA
gi|14 : cacttcctgtcgtcacattggatgcgtcacttcc--ACAAGAT-ATCTGAAAATA--TGT---------ATACG-A---T-ATAAATAA-AAC-------TA-GC-----------A------C------TAC----ATCTAG---AAT-T------------ACACTGCAAATAACAGGTTTATTGTTTTAAGCTTG
gi|15 : GTACT-T------------GCACTGCAAAGTGCATGTTTATTGCTTTTGGCCTGCAGATCAATATGC-TATCT-AAGGA
gi|16 : acaaaattaatTTCTATTGCATTGTAAACAATCCCATAAAACGTCACAAAACATGGGAAACTTCTGAA
gi|2 : agcgctaaatcTGATGTCATTATCGATAAAATCAATCACTACTAC------TTAG-----------------ACAGTGACAGCAGATAA---AGAGGAAATAATTCTGAAATTCTAAAATGATGTATATTACACAATCCTTGTGTACATTTTTTTGAATGTCTCTCTTGAAATCAA--TCTTTATGATATA-GTGAACATCCATCATCCAT-ATCATCCATCCATCCTTCCATCCTCGTTCCATCCTCCATCAAT-CAACAC--TCGA---TATCTGTTAGTGGCGGATTCACAA--------------AAC----ATGA--ATT------ACAC-AA-CGC--GCTAT--TAA--AGTGA--CACGAACAA-TT----AGAATGTCAAATCTTTGGAACGACCCATCCCTTCTCCAGTAC-AT---ATTG--AAAATA-A----TT---ACA--AA-AT--GGT---T--ATAAGAT-A-----AAATA--TATTCA------GTACATG---C-ATAGATAA-ATT-------TA-GC-----------A------C------TAC----A---AGCACATT-T------------ACACTGCAAATTACTTGTTTAGTATTTTTGGATTGTAAATC--TGTGT-TGTTT-ACGGAGCGACTTAAATTCCAA-AAGTCCTA--TAATTCCAGAAAGCGTCACAAAACATTGGGGATTTCTGAA
gi|3 : A--CACAAACAA-TT----ACATTGTAAAATTTTTGAGAC------TCCCTTCTTTAGGAC-A----AATG--AAG--A-GGT--TT---AC-------------------ATAAGAT-AG----AAATA--CAT---------GTATGTA-----ATAAATAA-AAC-------TA-GCACAACAGCTAAA------C------TAC----A---TGTATATC-TATGAAAGTATACACACTGTAAATCACATATATATTGTTTTTGGCTTGCAATTC--AATGCTTATTTAACAGAGTGAATTAatg
gi|4 : ccaact-CAACACATCCGGCGATACGTAAAAGTGTCAGATCCACAATGCAGTCAAGGTCAAAC----ACGAGAATT------ACAG-AA-AGC--ACTAAAATAACCAACGATCCACGAGTAAATT----AGATTGTCAAATTTTTGGGACGGCCTATCCCTTCCTCTTGCC-ATTTGAACG--AAA--A-GGT--TT---ACATGAG-AT--GGC---T--A----AT-T-----A---A--TGTT-A------GCAC-------------TAA-AAC-------TGTAC-----------A------CTGAATATACA---A---AAAATATT-T------------ACACTGCAAATTACATGTTTATTGTGTTCGACTTGCTAATC--AATGC-TTTCT-AGGGAGCggacacatcttatttgtccaaaggactggtccctgtataataatatttggaaataagcaggtggatgagtaaatttaattacacttaatt
gi|5 : agaatactaagttcCCAGTAAT-TAAC-C--TCTAC--TACCTGG-AGCGATAACTTCCC----------------AAC----ATAA--ATC------ACACTAA-A----ATTCC--C----AACGA--CACGATCAA-CT----GGATTGTCAAATTTTCGGGAAGTCCTCTACCTTCCTCGAGAC-A----ATTG--AAA--A-GGTTTTT---ATA--AA-AT--GGC---T--AAAAAAC-------AAAT-----TT-A------AAACGC----C-AGCACTAA-AAC-------TA--C-----------ACTAATTC------TAC----A---AGCATATC-A------------ACACCGa
gi|6 : ttttatttcaacgtataC-AACAGC--ACTAAAATGACCAATGA--CAAAAACAA-TTTTTAAAATT-TCAAATATTTGG---GACCTGTCCCTAATTTAGGAC-A----AGCG--GAA--A-G----GT---ATA---------------C--ATAAGAT-A---------------T-G------G-A---------ATAAATAC-AAC-------TA-GC-----------A------C------TACATCTA---AAC-TATTCT------------GCAAAGCAAATCACATGTTTATTGTTTTttttgggtttgtttgtatt
gi|7 : cgtacaagacaatctgacaagggaatatatagtaggactgGTGTCGGA--CACAC--------------AAC----GTGG--AT---------AC-AA-GGTCAACTAC--CGG--AATTA--AAAGACCAA-TA----AAAT-GTCAAATTGTCGGGACGACCTGTCCCTTCactt
gi|7 : ------------ACACTACAAATTACATATTTATTGTTTTGGACTGGCTAAT-------------T-ACTGAGCGAATgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttacttgtaacactacaaattacatatttattgttttggactggctaattactgagcgaat
gi|8 : gtgtcggacacacaacgtggatacaaggtcaactaccggaattaaaagaccaataaaatgtcaaattgtcgggacgacctgtcccttcgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttacttgta--AATGA--CACAAACAA-T-------GCTGCTAAAGTTTTGGAATGGCCCATCCCTTTTTCAGGAT-A----AACGAAAAA--A-G----TT---ACAT-AATAT--GGTGAAT--A-AAAAC-G-----GAGTA--CATT-A------A-ACACGAGACAAGAAATAATAGCACAATAATA-GC-----------A------C------AAC----A---AGTGCATT-
gi|9 : accaacatgacc-AA-AG-----TAC--TAA--AATGA--CA--AACGA-TT----TGA--GC---ATTTTCGG-ACGACCCGTCCCTTCTTCGTAAC-A----AACGA-AAA--A-G----TTTGCATA--AG-AT--AGG---C--A-ACGATCC-----AAATA--AATT-A------GCAC------T-ACAAAC-A-CAC-------TA-AA-----------T------C------TAC----A---AACGTGTT-T------------ACACTGCAAA-CGCATGCTTATTGattcaaagtttcttgt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAAAGTTTACATAAGATAAATATAGAATAAAAATAAAACTAGCACTTTATCATCTAAACTAAATCCACAAAAAAGAACACATTCTTTATTCCGTATTTATTTTT
Unaligned ( gi|13 ): AAAGTTTACATAAGATAAATATAGAATAAATAAAACTAGCACTATATCATCTAAACTAAATCCACAAAAGAGAACACATTCTTTATTCCGTATTTATTTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333 5555555555555 222 1 555555555555555 1 11 1 222 1 2222 1 444444444444 5555555555555555555555 2222222 111111 33333333 11111 1111 0000000000000000000000000000000000000000000000000000000000000000000000000 1111111 222222222222222222 111111 222222222222222222222222222 111 11 1 11
lowQualScore : 0 1 333 5555555555555 0 1 111 1 5 1 2 1 1 1 666666666666666 5 88 1 5 000 5 1 1 22 2 4444 4444 1 0000 0 444444444444 0 777 7 1 1111111111111111111111 0 99 0000000 5 000000 66666666 0 55 66 777 00000 8888 666666 5555 5 5 66 66 5 2222222222222222222222222222222222222222222222222222222222222222222222222 0 4 4444444 4 777777777777777777 222222 000000000000000000000000000 0 222 6 3 6 1 44 88 2 88 1
lowQualScore : . . ... ............. . . ... . . . . . . . ............... . .. . . ... . . . .. . .... .... . .... . ............ . ... . . ...................... . .. ....... . ...... ........ . .. .. ... ..... .... ...... .... . . .. .. . ......................................................................... . . ....... . .................. ...... ........................... . ... . . . . .. .. . .. .
lowQualScore : 7 0 000 0000000000000 7 0 000 0 5 0 5 0 0 0 000000000000000 5 55 0 5 555 0 0 0 00 5 0000 0000 0 0000 0 555555555555 2 888 5 5 3333333333333333333333 7 22 8888888 0 444444 99999999 1 55 44 000 00000 5555 666666 6666 0 0 99 99 0 7777777777777777777777777777777777777777777777777777777777777777777777777 7 4 4444444 4 888888888888888888 888888 888888888888888888888888888 3 888 7 3 7 0 66 33 0 33 0
consensus : TGATGTCATTATCGATACANTCTATCACTACTACAT-GAGTTAGGAAAAA-A-A---ATTGAACAATGACGGCGAANAAGTTAGAGNAAATAATCCCGAAATTCTAAAATGNCGCNTANTACACANTCCTTGTGTACATTTTTTTGAATGCCTCTCTTGAAATCAAAATCCTTATGATANAAGTGAGCATCCATCATCCATCANCATCCGNCNNCCGTTNNNNCNNNNTCNCANNCTCCATTAAT-CAACAC--TCGAC--TACCTGNTAGTGTCGGATTCACAA--------------AAC----ACGA--ATT------ACAC-AA-AGC--ACTAN--C-A--AATGAC--ACGA---AC-----AATT----AGATTGTCAAATTTTCGGGACGACCCGTCCCTTCTTCAGGACA----AA-CG-A--AA--A-GGT--TT---ACA--AA-ATGGT---TA--TAAGAT-A-----AAATACGT--T-A------GTACGCG---C-ATAAATAA-AAC-------TA-GC-----------A------CT------ACA----AGCG-TATT-T------------ACACTGCAAATCACATGTTTATTGTTTTTGGCTTGCAAATC--TATGC-TNTCT-ACGGAGCGANTTAAAT--TCTAACGCGTCGTA--TAATTCCANAAAACGTCACAAAACATGGGGAATTTCTGAA
Reference ( family-3075 ) : TGATGTCATTATCGATACANTCTATCACTACTACAT-GAGTTAGGAAAAA-A-A---ATTGAACAATGACGGCGAANAAGTTAGAGNAAATAATCCCGAAATTCTAAAATGNCGCNTANTACACANTCCTTGTGTACATTTTTTTGAATGCCTCTCTTGAAATCAAAATCCTTATGATANAAGTGAGCATCCATCATCCATCANCATCCGNCNNCCGTTNNNNCNNNNTCNCANNCTCCATTAAT-CAACAC--TCGAC--TACCTGNTAGTGTCGGATTCACAA--------------AAC----ACGA--ATT------ACAC-AA-AGC--ACTAN--CGA--AATGAC--ACGA---AC-----AATT----AGATTGTCAAATTTTCGGGACGACCCGTCCCTTCTTCAGGACA----AA-CG-A--AA--A-G----TT---ACA--AA-ATGGT---TA--TAAGAT-A-----AAATACGT--T-A------GTACGCG---C-ATAAATAA-AAC-------TA-GC-----------A------CT------ACA----AGCG-TATT-T------------ACACTGCAAATCACATGTTTATTGTTTTTGGCTTGCAAATC--TATGC-TNTCT-ACGGAGCGANTTAAAT--TCTAACGCGTCGTA--TAATTCCANAAAACGTCACAAAACATGGGGAATTTCTGAA
gi|1 : TGATGTCATTATTAATACACTCTATCATTACTACATCGAGTTAGGAAAAACATA---ATTGAACAATGACGATGAAGAAGTTAGAGTAAA-AATCCCGAAATTCTAAAATGCCCCTTAATACACACTCCTTGTGT---------------CTTCTCTTGAA-TCAAAATTCTTATGATAAAAGTGAGCAT---TCATCCATCAACATCCGATACCTGTTAGTGCGGATTCACAAA----ATTGATACAA-------G---------GTTAATG----GTTAACA-----------------C----ATGA--ATT------ACCC-AA-AGC--ACTAA--CCA--CGTGAC--ACTA---AC-----TATT----AGATTGTCAAATCTTTGGGA-----------TTCTTCAGGACA----AAATG-A--AA--ATGC---TT---TCA--TA-TT--T---TACATAAGAT-A-----AAATATGCACT-ACCGGGTATACATG---T-ATAGATAA-AAT-------TA-GC-----------A------CT------AAA----AGTT-CAGT-T------------GGACTGCAAATCACATGTTTATTATTTTTGGATTGTAAATC--TGTGT-TTTCT-ATGGAGCGACTAAAAT--TCTGACGCGTCGTA--TAATTCCAAACAACGTCACAAAACATGTGGAATTTCTG
gi|10 : catttcctgttgtttagaaataaatgcatctctCTGAT--TGTCGGATGCACAA--------------AATTGATACAA--GTTCGTCAAACAC-AA--GA--ATTAT----A--AAT-AC--A-AA---GC-----AATT----AAATTGTCGAATTTTCGGGACGACATGTCCCTTCTTCAG
gi|11 : TGTCATTATCAGTACATTCTATTACAACTGCATGGAGTTAGAAAAAA-A-AACTATTGAAGAAGGACAGCGAACAAtgtatatcatttgtagtaaattaggttaggatggaacacatt
gi|14 : cacttcctgtcgtcacattggatgcgtcacttccA--CAAGAT-ATCTGAAAATATGT-----------ATACG-A---T-ATAAATAA-AAC-------TA-GC-----------A------CT------ACATCT-AG----AAT-T------------ACACTGCAAATAACAGGTTTATTGTTTTAAGCTTG
gi|15 : G-TACT-T------------GCACTGCAAAGTGCATGTTTATTGCTTTTGGCCTGCAGATCAATATGC-TATCT-AAGGA
gi|16 : acaaaattaatAGCG--CTAAATCTTCTATTGCATTGTAAACAATCCCATAAAACGTCACAAAACATGGGAAACTTCTGAA
gi|2 : TGATGTCATTATCGATAAAATCAATCACTACTAC------TTAG------------------ACAGTGACAGCAGATAA---AGAGGAAATAATTCTGAAATTCTAAAATGATGTATATTACACAATCCTTGTGTACATTTTTTTGAATGTCTCTCTTGAAATCAA--TCTTTATGATATA-GTGAACATCCATCATCCAT-ATCATCCATCCATCCTTCCATCCTCGTTCCATCCTCCATCAAT-CAACAC--TCGA---TATCTGTTAGTGGCGGATTCACAA--------------AAC----ATGA--ATT------ACAC-AA-CGC--GCTAT--TAA--AGTGAC--ACGA---AC-----AATT----AGAATGTCAAATCTTTGGAACGACCCATCCCTTCTCCAGTACAT---AT-TG-A--AAATA-A----TT---ACA--AA-ATGGT---TA--TAAGAT-A-----AAATATAT--TCA------GTACATG---C-ATAGATAA-ATT-------TA-GC-----------A------CT------ACA----AGCA-CATT-T------------ACACTGCAAATTACTTGTTTAGTATTTTTGGATTGTAAATC--TGTGT-TGTTT-ACGGAGCGACTTAAAT--TCCAA-AAGTCCTA--TAATTCCAGAAAGCGTCACAAAACATTGGGGATTTCTGAA
gi|3 : AC--ACAA---AC-----AATT----ACATTGTAAAATTTTTGAGAC------TCCCTTCTTTAGGACA----AA-TG-A--AG--A-GGT--TT---AC---------------A--TAAGAT-AG----AAATACAT-----------GTATGTA-----ATAAATAA-AAC-------TA-GCACAACAGCTAAA------CT------ACA----TGTA-TATC-TATGAAAGTATACACACTGTAAATCACATATATATTGTTTTTGGCTTGCAATTC--AATGCTTATTTAACAGAGTGAATTAatg
gi|4 : ccaact-CAACACATCCGGCGATACGTAAAAGTGTCAGATCCACAATGCAGTCAAGGTCAAAC----ACGAGAATT------ACAG-AA-AGC--ACTA-----A--AATAACCAACGATCCACGAGTAAATT----AGATTGTCAAATTTTTGGGACGGCCTATCCCTTCCTCTTGCCATTTGAA-CG-A--AA--A-GGT--TT---ACATGAG-ATGGC---TA------AT-T-----AA---TGT--T-A------GCAC-------------TAA-AAC-------TGTAC-----------A------CTGAATATACA----AAAAATATT-T------------ACACTGCAAATTACATGTTTATTGTGTTCGACTTGCTAATC--AATGC-TTTCT-AGGGAGCggacacatcttatttgtccaaaggactggtccctgtataataatatttggaaataagcaggtggatgagtaaatttaattacacttaatt
gi|5 : agaatactaagttcCCAGTAAT-TAAC-C--TCTAC--TACCTGG-AGCGATAACTTCCCAA----------------C----ATAA--ATC------ACACTAA-A----ATTCC--C----AACGAC--ACGA---TC-----AACT----GGATTGTCAAATTTTCGGGAAGTCCTCTACCTTCCTCGAGACA----AT-TG-A--AA--A-GGTTTTT---ATA--AA-ATGGC---TA--AAAAAC-------AAAT---T--T-A------AAACGC----C-AGCACTAA-AAC-------TA--C-----------ACTAATTCT------ACA----AGCA-TATC-A------------ACACCGa
gi|6 : ttttatttcaacgtataC-AACAGC--ACTAAAATGACCAATGAC--AAAA---AC-----AATTTTTAAAATT-TCAAATATTTGGGAC---CTGTCCCTAATTTAGGACA----AG-CG-G--AA--A-G----GT---ATA-------------CA--TAAGAT-A---------------T-G------G-A---------ATAAATAC-AAC-------TA-GC-----------A------CT------ACATCTAAAC--TATTCT------------GCAAAGCAAATCACATGTTTATTGTTTTttttgggtttgtttgtatt
gi|7 : cgtacaagacaatctgacaagggaatatatagtaggactgGTGTCGGA--CACAC--------------AAC----GTGG--AT---------AC-AA-GGTCAACTAC--CGG--AATTAA--AAGA---CC-----AATA----AAAT-GTCAAATTGTCGGGACGACCTGTCCCTTCactt
gi|7 : ------------ACACTACAAATTACATATTTATTGTTTTGGACTGGCTAAT-------------T-ACTGAGCGAATgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttacttgtaacactacaaattacatatttattgttttggactggctaattactgagcgaat
gi|8 : gtgtcggacacacaacgtggatacaaggtcaactaccggaattaaaagaccaataaaatgtcaaattgtcgggacgacctgtcccttcgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttacttgta--AATGAC--ACAA---AC-----AAT-------GCTGCTAAAGTTTTGGAATGGCCCATCCCTTTTTCAGGATA----AA-CG-AAAAA--A-G----TT---ACAT-AATATGGTGAATA---AAAAC-G-----GAGTACAT--T-A------A-ACACGAGACAAGAAATAATAGCACAATAATA-GC-----------A------CA------ACA----AGTG-CATT-
gi|9 : accaacatgacc-AA-AGT--ACTA-----A--AATGAC--A--A---AC-----GATT----TGA--GC---ATTTTCGG-ACGACCCGTCCCTTCTTCGTAACA----AA-CGAA--AA--A-G----TTTGCATA--AG-ATAGG---CA---ACGATCC-----AAATAAAT--T-A------GCAC------T-ACAAAC-A-CAC-------TA-AA-----------T------CT------ACA----AACG-TGTT-T------------ACACTGCAAA-CGCATGCTTATTGattcaaagtttcttgt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAAAGTTTACATAAGATAAATATAGAATAAAAATAAAACTAGCACTTTATCATCTAAACTAAATCCACAAAAAAGAACACATTCTTTATTCCGTATTTATTTTT
Unaligned ( gi|13 ): AAAGTTTACATAAGATAAATATAGAATAAATAAAACTAGCACTATATCATCTAAACTAAATCCACAAAAGAGAACACATTCTTTATTCCGTATTTATTTT
Alignments
lowQualScore : 333 5555555555555 222 1 555555555555555 1 11 1 222 1 2222 1 444444444444 5555555555555555555555 2222222 111111 333333333 11111 1111 9999999999999999999999999999999999999999999999999999999999999999 1111111 222222222222222222 111111 111 222222222222 111 11 1 11
lowQualScore : 0 1 333 5555555555555 0 1 111 1 5 1 2 1 1 1 666666666666666 5 88 1 5 000 5 1 1 22 2 4444 4444 1 0000 0 444444444444 0 777 7 1 1111111111111111111111 0 99 0000000 5 000000 111111111 777 0 55 66 777 00000 8888 3 1 1 55 0000 888 0 66 9999999999999999999999999999999999999999999999999999999999999999 0 4 4444444 4 777777777777777777 222222 9999 777 444 4 000000000000 0 222 6 3 6 1 44 88 2 88 1
lowQualScore : . . ... ............. . . ... . . . . . . . ............... . .. . . ... . . . .. . .... .... . .... . ............ . ... . . ...................... . .. ....... . ...... ......... ... . .. .. ... ..... .... . . . .. .... ... . .. ................................................................ . . ....... . .................. ...... .... ... ... . ............ . ... . . . . .. .. . .. .
lowQualScore : 7 0 000 0000000000000 7 0 000 0 5 0 5 0 0 0 000000000000000 5 55 0 5 555 0 0 0 00 5 0000 0000 0 0000 0 555555555555 2 888 5 5 3333333333333333333333 7 22 8888888 0 444444 111111111 000 1 55 44 000 00000 5555 2 6 4 33 6666 000 2 99 1111111111111111111111111111111111111111111111111111111111111111 7 4 4444444 4 888888888888888888 888888 4444 888 111 0 555555555555 3 888 7 3 7 0 66 33 0 33 0
consensus : TGATGTCATTATCGATACANTCTATCACTACTACAT-GAGTTAGGAAAAA-A-A---ATTGAACAATGACGGCGAANAAGTTAGAGNAAATAATCCCGAAATTCTAAAATGNCGCNTANTACACANTCCTTGTGTACATTTTTTTGAATGCCTCTCTTGAAATCAAAATCCTTATGATANAAGTGAGCATCCATCATCCATCANCATCCGNCNNCCGTTNNNNCNNNNTCNCANNCTCCATTAAT-CAACAC--TCGAC--TACCTGNTAGTGTCGGATTCACAA--------------AAC----ACGA--ATT------ACAC-AA-AGC--ACTAN-----CA-A-A-TGAC--ACGA---AC-----AATT----AGATTGTCAAATTTTCGGGACGACCCGTCCCTTCTTCAGGACA----AA-C-GAAAAGG--TTTAC--A--AA-ATGGT---TA---AAGAT-A-----AAATACGT--T-A------GTACGCG---C-ATAAATAA-AAC-------TA-GC-----------A------CT------AC----A---AGCG-TATT-T------------ACACTGCAAATCACATGTTTATTGTTTTTGGCTTGCAAATC--TATGC-TNTCT-ACGGAGCGANTTAAAT--TCTAACGCGTCGTA--TAATTCCANAAAACGTCACAAAACATGGGGAATTTCTGAA
Reference ( family-3075 ) : TGATGTCATTATCGATACANTCTATCACTACTACAT-GAGTTAGGAAAAA-A-A---ATTGAACAATGACGGCGAANAAGTTAGAGNAAATAATCCCGAAATTCTAAAATGNCGCNTANTACACANTCCTTGTGTACATTTTTTTGAATGCCTCTCTTGAAATCAAAATCCTTATGATANAAGTGAGCATCCATCATCCATCANCATCCGNCNNCCGTTNNNNCNNNNTCNCANNCTCCATTAAT-CAACAC--TCGAC--TACCTGNTAGTGTCGGATTCACAA--------------AAC----ACGA--ATT------ACAC-AA-AGC--ACTAN-----CA-A-A-TGAC--ACGA---AC-----AATT----AGATTGTCAAATTTTCGGGACGACCCGTCCCTTCTTCAGGACA----AA-C-GAAAAGG--TTTAC--A--AA-ATGGT---TA--TAAGAT-A-----AAATACGT--T-A------GTACGCG---C-ATAAATAA-AAC-------TA-GC-----------A------CT------AC----A---AGCG-TATT-T------------ACACTGCAAATCACATGTTTATTGTTTTTGGCTTGCAAATC--TATGC-TNTCT-ACGGAGCGANTTAAAT--TCTAACGCGTCGTA--TAATTCCANAAAACGTCACAAAACATGGGGAATTTCTGAA
gi|1 : TGATGTCATTATTAATACACTCTATCATTACTACATCGAGTTAGGAAAAACATA---ATTGAACAATGACGATGAAGAAGTTAGAGTAAA-AATCCCGAAATTCTAAAATGCCCCTTAATACACACTCCTTGTGT---------------CTTCTCTTGAA-TCAAAATTCTTATGATAAAAGTGAGCAT---TCATCCATCAACATCCGATACCTGTTAGTGCGGATTCACAAA----ATTGATACAA-------G---------GTTAATG----GTTAACA-----------------C----ATGA--ATT------ACCC-AA-AGC--ACTAA-----CC-ACG-TGAC--ACTA---AC-----TATT----AGATTGTCAAATCTTTGGGA-----------TTCTTCAGGACA----AAAT-GAAAATG--CTTTC--A--TA-TT--T---TACATAAGAT-A-----AAATATGCACT-ACCGGGTATACATG---T-ATAGATAA-AAT-------TA-GC-----------A------CT------AA----A---AGTT-CAGT-T------------GGACTGCAAATCACATGTTTATTATTTTTGGATTGTAAATC--TGTGT-TTTCT-ATGGAGCGACTAAAAT--TCTGACGCGTCGTA--TAATTCCAAACAACGTCACAAAACATGTGGAATTTCTG
gi|10 : catttcctgttgtttagaaataaatgcatctctCTGAT--TGTCGGATGCACAA--------------AATTGATACAA--GTTCGTCAAACAC-AA--GA--ATTAT------A-A-A-T-AC--A-AA---GC-----AATT----AAATTGTCGAATTTTCGGGACGACATGTCCCTTCTTCAG
gi|11 : TGTCATTATCAGTACATTCTATTACAACTGCATGGAGTTAGAAAAAA-A-AACTATTGAAGAAGGACAGCGAACAAtgtatatcatttgtagtaaattaggttaggatggaacacatt
gi|14 : cacttcctgtcgtcacattggatgcgtcacttccA--CAAGAT-ATCTGAAAATATGT-----------ATACG-A---T-ATAAATAA-AAC-------TA-GC-----------A------CT------AC----ATCTAG----AAT-T------------ACACTGCAAATAACAGGTTTATTGTTTTAAGCTTG
gi|15 : G-TACT-T------------GCACTGCAAAGTGCATGTTTATTGCTTTTGGCCTGCAGATCAATATGC-TATCT-AAGGA
gi|16 : acaaaattaatAGCG--CTAAATCTTCTATTGCATTGTAAACAATCCCATAAAACGTCACAAAACATGGGAAACTTCTGAA
gi|2 : TGATGTCATTATCGATAAAATCAATCACTACTAC------TTAG------------------ACAGTGACAGCAGATAA---AGAGGAAATAATTCTGAAATTCTAAAATGATGTATATTACACAATCCTTGTGTACATTTTTTTGAATGTCTCTCTTGAAATCAA--TCTTTATGATATA-GTGAACATCCATCATCCAT-ATCATCCATCCATCCTTCCATCCTCGTTCCATCCTCCATCAAT-CAACAC--TCGA---TATCTGTTAGTGGCGGATTCACAA--------------AAC----ATGA--ATT------ACAC-AA-CGC--GCTAT-----TA-A-AGTGAC--ACGA---AC-----AATT----AGAATGTCAAATCTTTGGAACGACCCATCCCTTCTCCAGTACA----TA-TTGAAAATA--ATTAC--A--AA-ATGGT---TA--TAAGAT-A-----AAATATAT--TCA------GTACATG---C-ATAGATAA-ATT-------TA-GC-----------A------CT------AC----A---AGCA-CATT-T------------ACACTGCAAATTACTTGTTTAGTATTTTTGGATTGTAAATC--TGTGT-TGTTT-ACGGAGCGACTTAAAT--TCCAA-AAGTCCTA--TAATTCCAGAAAGCGTCACAAAACATTGGGGATTTCTGAA
gi|3 : AC--ACAA---AC-----AATT----ACATTGTAAAATTTTTGAGAC------TCCCTTCTTTAGGACA----AA-T-GAAGAGG--TTTAC-----------------A--TAAGAT-AG----AAATACAT-----------GTATGTA-----ATAAATAA-AAC-------TA-GCACAACAGCTAAA------CT------AC----A---TGTA-TATC-TATGAAAGTATACACACTGTAAATCACATATATATTGTTTTTGGCTTGCAATTC--AATGCTTATTTAACAGAGTGAATTAatg
gi|4 : ccaact-CAACACATCCGGCGATACGTAAAAGTGTCAGATCCACAATGCAGTCAAGGTCAAAC----ACGAGAATT------ACAG-AA-AGC--ACTA-------A-A-A-TAACCAACGATCCACGAGTAAATT----AGATTGTCAAATTTTTGGGACGGCCTATCCCTTCCTCTTGCCATTTGAA-C-GAAAAGG--TTTAC--ATGAG-ATGGC---TA------AT-T-----AA---TGT--T-A------GCAC-------------TAA-AAC-------TGTAC-----------A------CTGAATATAC----A---AAAAATATT-T------------ACACTGCAAATTACATGTTTATTGTGTTCGACTTGCTAATC--AATGC-TTTCT-AGGGAGCggacacatcttatttgtccaaaggactggtccctgtataataatatttggaaataagcaggtggatgagtaaatttaattacacttaatt
gi|5 : agaatactaagttcCCAGTAAT-TAAC-C--TCTAC--TACCTGG-AGCGATAACTTCCCAA----------------C----ATAA--ATC------ACACTAA-A----ATTCC-----CA-A---CGAC--ACGA---TC-----AACT----GGATTGTCAAATTTTCGGGAAGTCCTCTACCTTCCTCGAGACA----AT-T-GAAAAGGTTTTTAT--A--AA-ATGGC---TA--AAAAAC-------AAAT---T--T-A------AAACGC----C-AGCACTAA-AAC-------TA--C-----------ACTAATTCT------AC----A---AGCA-TATC-A------------ACACCGa
gi|6 : ttttatttcaacgtataC-AACAGC--ACTAAAATGACC-A-A-TGAC--AAAA---AC-----AATTTTTAAAATT-TCAAATATTTGG---GACCTGTCCCTAATTTAGGACA----AG-C-GGAAAGG--TATAC------------------------AT-A-----AGATATG------------------G---A-ATAAATAC-AAC-------TA-GC-----------A------CT------ACATCTA---AAC--TATTCT------------GCAAAGCAAATCACATGTTTATTGTTTTttttgggtttgtttgtatt
gi|7 : cgtacaagacaatctgacaagggaatatatagtaggactgGTGTCGGA--CACAC--------------AAC----GTGG--AT---------AC-AA-GGTCAACTAC-----CGGA-A-TTAA--AAGA---CC-----AATA----AAAT-GTCAAATTGTCGGGACGACCTGTCCCTTCactt
gi|7 : ------------ACACTACAAATTACATATTTATTGTTTTGGACTGGCTAAT-------------T-ACTGAGCGAATgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttacttgtaacactacaaattacatatttattgttttggactggctaattactgagcgaat
gi|8 : gtgtcggacacacaacgtggatacaaggtcaactaccggaattaaaagaccaataaaatgtcaaattgtcgggacgacctgtcccttcgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttacttgta-A-A-TGAC--ACAA---AC-----AAT-------GCTGCTAAAGTTTTGGAATGGCCCATCCCTTTTTCAGGATA----AA-C-GAAAAAA--GTTAC--AT-AATATGGTGAATA---AAAAC-G-----GAGTACAT--T-A------A-ACACGAGACAAGAAATAATAGCACAATAATA-GC-----------A------CA------AC----A---AGTG-CATT-
gi|9 : accaacatgacc-AA-AGT--ACTA-------A-A-A-TGAC--A--A---AC-----GATT----TGA--GC---ATTTTCGG-ACGACCCGTCCCTTCTTCGTAACA----AA-C-GAAAAAG--TTTGCATA--AG-ATAGG---CA---ACGATCC-----AAATAAAT--T-A------GCAC------T-ACAAAC-A-CAC-------TA-AA-----------T------CT------AC----A---AACG-TGTT-T------------ACACTGCAAA-CGCATGCTTATTGattcaaagtttcttgt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAAAGTTTACATAAGATAAATATAGAATAAAAATAAAACTAGCACTTTATCATCTAAACTAAATCCACAAAAAAGAACACATTCTTTATTCCGTATTTATTTTT
Unaligned ( gi|13 ): AAAGTTTACATAAGATAAATATAGAATAAATAAAACTAGCACTATATCATCTAAACTAAATCCACAAAAGAGAACACATTCTTTATTCCGTATTTATTTT
Alignments
lowQualScore : 333 5555555555555 222 1 555555555555555 1 11 1 222 1 2222 1 444444444444 5555555555555555555555 2222222 111111 333333333 11111 1111 9999999999999999999999999999999999999999999999999999999999999999 1111111 222222222222222222 111111 222222222222222222222222222 111 11 1 11
lowQualScore : 0 1 333 5555555555555 0 1 111 1 5 1 2 1 1 1 666666666666666 5 88 1 5 000 5 1 1 22 2 4444 4444 1 0000 0 444444444444 0 777 7 1 1111111111111111111111 0 99 0000000 5 000000 111111111 777 0 55 66 777 00000 8888 666666 0000 888 0 66 2222222222222222222222222222222222222222222222222222222222222222 0 4 4444444 4 777777777777777777 222222 000000000000000000000000000 0 222 6 3 6 1 44 88 2 88 1
lowQualScore : . . ... ............. . . ... . . . . . . . ............... . .. . . ... . . . .. . .... .... . .... . ............ . ... . . ...................... . .. ....... . ...... ......... ... . .. .. ... ..... .... ...... .... ... . .. ................................................................ . . ....... . .................. ...... ........................... . ... . . . . .. .. . .. .
lowQualScore : 7 0 000 0000000000000 7 0 000 0 5 0 5 0 0 0 000000000000000 5 55 0 5 555 0 0 0 00 5 0000 0000 0 0000 0 555555555555 2 888 5 5 3333333333333333333333 7 22 8888888 0 444444 111111111 000 1 55 44 000 00000 5555 666666 6666 000 2 99 0000000000000000000000000000000000000000000000000000000000000000 7 4 4444444 4 888888888888888888 888888 888888888888888888888888888 3 888 7 3 7 0 66 33 0 33 0
consensus : TGATGTCATTATCGATACANTCTATCACTACTACAT-GAGTTAGGAAAAA-A-A---ATTGAACAATGACGGCGAANAAGTTAGAGNAAATAATCCCGAAATTCTAAAATGNCGCNTANTACACANTCCTTGTGTACATTTTTTTGAATGCCTCTCTTGAAATCAAAATCCTTATGATANAAGTGAGCATCCATCATCCATCANCATCCGNCNNCCGTTNNNNCNNNNTCNCANNCTCCATTAAT-CAACAC--TCGAC--TACCTGNTAGTGTCGGATTCACAA--------------AAC----ACGA--ATT------ACAC-AA-AGC--ACTAN-----CA-A-A-TGAC--ACGA---AC-----AATT----AGATTGTCAAATTTTCGGGACGACCCGTCCCTTCTTCAGGACA----AA-C-GAAAAGG--TTTAC--A--AA-ATGGT---TA---AAGAT-A-----AAATACGT--T-A------GTACGCG---C-ATAAATAA-AAC-------TA-GC-----------A------CT------ACA----AGCG-TATT-T------------ACACTGCAAATCACATGTTTATTGTTTTTGGCTTGCAAATC--TATGC-TNTCT-ACGGAGCGANTTAAAT--TCTAACGCGTCGTA--TAATTCCANAAAACGTCACAAAACATGGGGAATTTCTGAA
Reference ( family-3075 ) : TGATGTCATTATCGATACANTCTATCACTACTACAT-GAGTTAGGAAAAA-A-A---ATTGAACAATGACGGCGAANAAGTTAGAGNAAATAATCCCGAAATTCTAAAATGNCGCNTANTACACANTCCTTGTGTACATTTTTTTGAATGCCTCTCTTGAAATCAAAATCCTTATGATANAAGTGAGCATCCATCATCCATCANCATCCGNCNNCCGTTNNNNCNNNNTCNCANNCTCCATTAAT-CAACAC--TCGAC--TACCTGNTAGTGTCGGATTCACAA--------------AAC----ACGA--ATT------ACAC-AA-AGC--ACTAN-----CA-A-A-TGAC--ACGA---AC-----AATT----AGATTGTCAAATTTTCGGGACGACCCGTCCCTTCTTCAGGACA----AA-C-GAAAAGG--TTTAC--A--AA-ATGGT---TA---AAGAT-A-----AAATACGT--T-A------GTACGCG---C-ATAAATAA-AAC-------TA-GC-----------A------CT------ACA----AGCG-TATT-T------------ACACTGCAAATCACATGTTTATTGTTTTTGGCTTGCAAATC--TATGC-TNTCT-ACGGAGCGANTTAAAT--TCTAACGCGTCGTA--TAATTCCANAAAACGTCACAAAACATGGGGAATTTCTGAA
gi|1 : TGATGTCATTATTAATACACTCTATCATTACTACATCGAGTTAGGAAAAACATA---ATTGAACAATGACGATGAAGAAGTTAGAGTAAA-AATCCCGAAATTCTAAAATGCCCCTTAATACACACTCCTTGTGT---------------CTTCTCTTGAA-TCAAAATTCTTATGATAAAAGTGAGCAT---TCATCCATCAACATCCGATACCTGTTAGTGCGGATTCACAAA----ATTGATACAA-------G---------GTTAATG----GTTAACA-----------------C----ATGA--ATT------ACCC-AA-AGC--ACTAA-----CC-ACG-TGAC--ACTA---AC-----TATT----AGATTGTCAAATCTTTGGGA-----------TTCTTCAGGACA----AAAT-GAAAATG--CTTTC--A--TA-TT--T---TACATAAGAT-A-----AAATATGCACT-ACCGGGTATACATG---T-ATAGATAA-AAT-------TA-GC-----------A------CT------AAA----AGTT-CAGT-T------------GGACTGCAAATCACATGTTTATTATTTTTGGATTGTAAATC--TGTGT-TTTCT-ATGGAGCGACTAAAAT--TCTGACGCGTCGTA--TAATTCCAAACAACGTCACAAAACATGTGGAATTTCTG
gi|10 : catttcctgttgtttagaaataaatgcatctctCTGAT--TGTCGGATGCACAA--------------AATTGATACAA--GTTCGTCAAACAC-AA--GA--ATTAT------A-A-A-T-AC--A-AA---GC-----AATT----AAATTGTCGAATTTTCGGGACGACATGTCCCTTCTTCAG
gi|11 : TGTCATTATCAGTACATTCTATTACAACTGCATGGAGTTAGAAAAAA-A-AACTATTGAAGAAGGACAGCGAACAAtgtatatcatttgtagtaaattaggttaggatggaacacatt
gi|14 : cacttcctgtcgtcacattggatgcgtcacttcc---AAGAT-ATCTGAAAATATGT-----------ATACG-A---T-ATAAATAA-AAC-------TA-GC-----------A------CT------ACATCT-AG----AAT-T------------ACACTGCAAATAACAGGTTTATTGTTTTAAGCTTG
gi|15 : acG-TACT-T------------GCACTGCAAAGTGCATGTTTATTGCTTTTGGCCTGCAGATCAATATGC-TATCT-AAGGA
gi|16 : acaaaattaatAGCG--CTAAATCTTCTATTGCATTGTAAACAATCCCATAAAACGTCACAAAACATGGGAAACTTCTGAA
gi|2 : TGATGTCATTATCGATAAAATCAATCACTACTAC------TTAG------------------ACAGTGACAGCAGATAA---AGAGGAAATAATTCTGAAATTCTAAAATGATGTATATTACACAATCCTTGTGTACATTTTTTTGAATGTCTCTCTTGAAATCAA--TCTTTATGATATA-GTGAACATCCATCATCCAT-ATCATCCATCCATCCTTCCATCCTCGTTCCATCCTCCATCAAT-CAACAC--TCGA---TATCTGTTAGTGGCGGATTCACAA--------------AAC----ATGA--ATT------ACAC-AA-CGC--GCTAT-----TA-A-AGTGAC--ACGA---AC-----AATT----AGAATGTCAAATCTTTGGAACGACCCATCCCTTCTCCAGTACA----TA-TTGAAAATA--ATTAC--A--AA-ATGGT---TAT--AAGAT-A-----AAATATAT--TCA------GTACATG---C-ATAGATAA-ATT-------TA-GC-----------A------CT------ACA----AGCA-CATT-T------------ACACTGCAAATTACTTGTTTAGTATTTTTGGATTGTAAATC--TGTGT-TGTTT-ACGGAGCGACTTAAAT--TCCAA-AAGTCCTA--TAATTCCAGAAAGCGTCACAAAACATTGGGGATTTCTGAA
gi|3 : AC--ACAA---AC-----AATT----ACATTGTAAAATTTTTGAGAC------TCCCTTCTTTAGGACA----AA-T-GAAGAGG--TTTAC--------AT-----------AAGAT-AG----AAATACAT-----------GTATGTA-----ATAAATAA-AAC-------TA-GCACAACAGCTAAA------CT------ACA----TGTA-TATC-TATGAAAGTATACACACTGTAAATCACATATATATTGTTTTTGGCTTGCAATTC--AATGCTTATTTAACAGAGTGAATTAatg
gi|4 : ccaact-CAACACATCCGGCGATACGTAAAAGTGTCAGATCCACAATGCAGTCAAGGTCAAAC----ACGAGAATT------ACAG-AA-AGC--ACTA-------A-A-A-TAACCAACGATCCACGAGTAAATT----AGATTGTCAAATTTTTGGGACGGCCTATCCCTTCCTCTTGCCATTTGAA-C-GAAAAGG--TTTAC--ATGAG-ATGGC---TA---AT--T-A-----A----TGT--T-A------GCAC-------------TAA-AAC-------TGTAC-----------A------CTGAATATACA----AAAAATATT-T------------ACACTGCAAATTACATGTTTATTGTGTTCGACTTGCTAATC--AATGC-TTTCT-AGGGAGCggacacatcttatttgtccaaaggactggtccctgtataataatatttggaaataagcaggtggatgagtaaatttaattacacttaatt
gi|5 : agaatactaagttcCCAGTAAT-TAAC-C--TCTAC--TACCTGG-AGCGATAACTTCCCAA----------------C----ATAA--ATC------ACACTAA-A----ATTCC-----CA-A---CGAC--ACGA---TC-----AACT----GGATTGTCAAATTTTCGGGAAGTCCTCTACCTTCCTCGAGACA----AT-T-GAAAAGGTTTTTAT--A--AA-ATGGC---TA---AAAAA-C-----AAAT---T--T-A------AAACGC----C-AGCACTAA-AAC-------TA--C-----------ACTAATTCT------ACA----AGCA-TATC-A------------ACACCGa
gi|6 : ttttatttcaacgtataC-AACAGC--ACTAAAATGACC-A-A-TGAC--AAAA---AC-----AATTTTTAAAATT-TCAAATATTTGGGAC---CTGTCCCTAATTTAGGACA----AG-C-GGAAAGG--TATAC--A----------------------T-A-----AGATATG------------------G---A-ATAAATAC-AAC-------TA-GC-----------A------CT------ACATCTAAAC--TATTCT------------GCAAAGCAAATCACATGTTTATTGTTTTttttgggtttgtttgtatt
gi|7 : cgtacaagacaatctgacaagggaatatatagtaggactgGTGTCGGA--CACAC--------------AAC----GTGG--AT---------AC-AA-GGTCAACTAC-----CGGA-A-TTAA--AAGA---CC-----AATA----AAAT-GTCAAATTGTCGGGACGACCTGTCCCTTCactt
gi|7 : ------------ACACTACAAATTACATATTTATTGTTTTGGACTGGCTAAT-------------T-ACTGAGCGAATgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttacttgtaacactacaaattacatatttattgttttggactggctaattactgagcgaat
gi|8 : gtgtcggacacacaacgtggatacaaggtcaactaccggaattaaaagaccaataaaatgtcaaattgtcgggacgacctgtcccttcgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttacttgta-A-A-TGAC--ACAA---AC-----AAT-------GCTGCTAAAGTTTTGGAATGGCCCATCCCTTTTTCAGGATA----AA-C-GAAAAAA--GTTAC--AT-AATATGGTGAATA---AAAAC-G-----GAGTACAT--T-A------A-ACACGAGACAAGAAATAATAGCACAATAATA-GC-----------A------CA------ACA----AGTG-CATT-
gi|9 : accaacatgacc-AA-AGT--ACTA-------A-A-A-TGAC--A--A---AC-----GATT----TGA--GC---ATTTTCGG-ACGACCCGTCCCTTCTTCGTAACA----AA-C-GAAAAAG--TTTGCATA--AG-ATAGG---CA---ACGATCC-----AAATAAAT--T-A------GCAC------T-ACAAAC-A-CAC-------TA-AA-----------T------CT------ACA----AACG-TGTT-T------------ACACTGCAAA-CGCATGCTTATTGattcaaagtttcttgt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAAAGTTTACATAAGATAAATATAGAATAAAAATAAAACTAGCACTTTATCATCTAAACTAAATCCACAAAAAAGAACACATTCTTTATTCCGTATTTATTTTT
Unaligned ( gi|13 ): AAAGTTTACATAAGATAAATATAGAATAAATAAAACTAGCACTATATCATCTAAACTAAATCCACAAAAGAGAACACATTCTTTATTCCGTATTTATTTT
Alignments
lowQualScore : 333 5555555555555 222 1 555555555555555 1 11 1 222 1 2222 1 444444444444 5555555555555555555555 2222222 111111 333333333 11111 1111 9999999999999999999999999999999999999999999999999999999999999999 1111111 222222222222222222 111111 222222222222222222222222222 111 11 1 11
lowQualScore : 0 1 333 5555555555555 0 1 111 1 5 1 2 1 1 1 666666666666666 5 88 1 5 000 5 1 1 22 2 4444 4444 1 0000 0 444444444444 0 777 7 1 1111111111111111111111 0 99 0000000 5 000000 111111111 777 0 55 66 777 00000 8888 666666 0000 888 0 66 2222222222222222222222222222222222222222222222222222222222222222 0 4 4444444 4 777777777777777777 222222 000000000000000000000000000 0 222 6 3 6 1 44 88 2 88 1
lowQualScore : . . ... ............. . . ... . . . . . . . ............... . .. . . ... . . . .. . .... .... . .... . ............ . ... . . ...................... . .. ....... . ...... ......... ... . .. .. ... ..... .... ...... .... ... . .. ................................................................ . . ....... . .................. ...... ........................... . ... . . . . .. .. . .. .
lowQualScore : 7 0 000 0000000000000 7 0 000 0 5 0 5 0 0 0 000000000000000 5 55 0 5 555 0 0 0 00 5 0000 0000 0 0000 0 555555555555 2 888 5 5 3333333333333333333333 7 22 8888888 0 444444 111111111 000 1 55 44 000 00000 5555 666666 6666 000 2 99 0000000000000000000000000000000000000000000000000000000000000000 7 4 4444444 4 888888888888888888 888888 888888888888888888888888888 3 888 7 3 7 0 66 33 0 33 0
consensus : TGATGTCATTATCGATACANTCTATCACTACTACAT-GAGTTAGGAAAAA-A-A---ATTGAACAATGACGGCGAANAAGTTAGAGNAAATAATCCCGAAATTCTAAAATGNCGCNTANTACACANTCCTTGTGTACATTTTTTTGAATGCCTCTCTTGAAATCAAAATCCTTATGATANAAGTGAGCATCCATCATCCATCANCATCCGNCNNCCGTTNNNNCNNNNTCNCANNCTCCATTAAT-CAACAC--TCGAC--TACCTGNTAGTGTCGGATTCACAA--------------AAC----ACGA--ATT------ACAC-AA-AGC--ACTAN-----CA-A-A-TGAC--ACGA---AC-----AATT----AGATTGTCAAATTTTCGGGACGACCCGTCCCTTCTTCAGGACA----AA-C-GAAAAGG--TTTAC--A--AA-ATGGT---TA---AAGAT-A-----AAATACGT--T-A------GTACGCG---C-ATAAATAA-AAC-------TA-GC-----------A------CT------ACA----AGCG-TATT-T------------ACACTGCAAATCACATGTTTATTGTTTTTGGCTTGCAAATC--TATGC-TNTCT-ACGGAGCGANTTAAAT--TCTAACGCGTCGTA--TAATTCCANAAAACGTCACAAAACATGGGGAATTTCTGAA
Reference ( family-3075 ) : TGATGTCATTATCGATACANTCTATCACTACTACAT-GAGTTAGGAAAAA-A-A---ATTGAACAATGACGGCGAANAAGTTAGAGNAAATAATCCCGAAATTCTAAAATGNCGCNTANTACACANTCCTTGTGTACATTTTTTTGAATGCCTCTCTTGAAATCAAAATCCTTATGATANAAGTGAGCATCCATCATCCATCANCATCCGNCNNCCGTTNNNNCNNNNTCNCANNCTCCATTAAT-CAACAC--TCGAC--TACCTGNTAGTGTCGGATTCACAA--------------AAC----ACGA--ATT------ACAC-AA-AGC--ACTAN-----CA-A-A-TGAC--ACGA---AC-----AATT----AGATTGTCAAATTTTCGGGACGACCCGTCCCTTCTTCAGGACA----AA-C-GAAAAGG--TTTAC--A--AA-ATGGT---TA---AAGAT-A-----AAATACGT--T-A------GTACGCG---C-ATAAATAA-AAC-------TA-GC-----------A------CT------ACA----AGCG-TATT-T------------ACACTGCAAATCACATGTTTATTGTTTTTGGCTTGCAAATC--TATGC-TNTCT-ACGGAGCGANTTAAAT--TCTAACGCGTCGTA--TAATTCCANAAAACGTCACAAAACATGGGGAATTTCTGAA
gi|1 : TGATGTCATTATTAATACACTCTATCATTACTACATCGAGTTAGGAAAAACATA---ATTGAACAATGACGATGAAGAAGTTAGAGTAAA-AATCCCGAAATTCTAAAATGCCCCTTAATACACACTCCTTGTGT---------------CTTCTCTTGAA-TCAAAATTCTTATGATAAAAGTGAGCAT---TCATCCATCAACATCCGATACCTGTTAGTGCGGATTCACAAA----ATTGATACAA-------G---------GTTAATG----GTTAACA-----------------C----ATGA--ATT------ACCC-AA-AGC--ACTAA-----CC-ACG-TGAC--ACTA---AC-----TATT----AGATTGTCAAATCTTTGGGA-----------TTCTTCAGGACA----AAAT-GAAAATG--CTTTC--A--TA-TT--T---TACATAAGAT-A-----AAATATGCACT-ACCGGGTATACATG---T-ATAGATAA-AAT-------TA-GC-----------A------CT------AAA----AGTT-CAGT-T------------GGACTGCAAATCACATGTTTATTATTTTTGGATTGTAAATC--TGTGT-TTTCT-ATGGAGCGACTAAAAT--TCTGACGCGTCGTA--TAATTCCAAACAACGTCACAAAACATGTGGAATTTCTG
gi|10 : catttcctgttgtttagaaataaatgcatctctCTGAT--TGTCGGATGCACAA--------------AATTGATACAA--GTTCGTCAAACAC-AA--GA--ATTAT------A-A-A-T-AC--A-AA---GC-----AATT----AAATTGTCGAATTTTCGGGACGACATGTCCCTTCTTCAG
gi|11 : TGTCATTATCAGTACATTCTATTACAACTGCATGGAGTTAGAAAAAA-A-AACTATTGAAGAAGGACAGCGAACAAtgtatatcatttgtagtaaattaggttaggatggaacacatt
gi|14 : cacttcctgtcgtcacattggatgcgtcacttcc---AAGAT-ATCTGAAAATATGT-----------ATACG-A---T-ATAAATAA-AAC-------TA-GC-----------A------CT------ACATCT-AG----AAT-T------------ACACTGCAAATAACAGGTTTATTGTTTTAAGCTTG
gi|15 : acG-TACT-T------------GCACTGCAAAGTGCATGTTTATTGCTTTTGGCCTGCAGATCAATATGC-TATCT-AAGGA
gi|16 : acaaaattaatAGCG--CTAAATCTTCTATTGCATTGTAAACAATCCCATAAAACGTCACAAAACATGGGAAACTTCTGAA
gi|2 : TGATGTCATTATCGATAAAATCAATCACTACTAC------TTAG------------------ACAGTGACAGCAGATAA---AGAGGAAATAATTCTGAAATTCTAAAATGATGTATATTACACAATCCTTGTGTACATTTTTTTGAATGTCTCTCTTGAAATCAA--TCTTTATGATATA-GTGAACATCCATCATCCAT-ATCATCCATCCATCCTTCCATCCTCGTTCCATCCTCCATCAAT-CAACAC--TCGA---TATCTGTTAGTGGCGGATTCACAA--------------AAC----ATGA--ATT------ACAC-AA-CGC--GCTAT-----TA-A-AGTGAC--ACGA---AC-----AATT----AGAATGTCAAATCTTTGGAACGACCCATCCCTTCTCCAGTACA----TA-TTGAAAATA--ATTAC--A--AA-ATGGT---TAT--AAGAT-A-----AAATATAT--TCA------GTACATG---C-ATAGATAA-ATT-------TA-GC-----------A------CT------ACA----AGCA-CATT-T------------ACACTGCAAATTACTTGTTTAGTATTTTTGGATTGTAAATC--TGTGT-TGTTT-ACGGAGCGACTTAAAT--TCCAA-AAGTCCTA--TAATTCCAGAAAGCGTCACAAAACATTGGGGATTTCTGAA
gi|3 : AC--ACAA---AC-----AATT----ACATTGTAAAATTTTTGAGAC------TCCCTTCTTTAGGACA----AA-T-GAAGAGG--TTTAC--------AT-----------AAGAT-AG----AAATACAT-----------GTATGTA-----ATAAATAA-AAC-------TA-GCACAACAGCTAAA------CT------ACA----TGTA-TATC-TATGAAAGTATACACACTGTAAATCACATATATATTGTTTTTGGCTTGCAATTC--AATGCTTATTTAACAGAGTGAATTAatg
gi|4 : ccaact-CAACACATCCGGCGATACGTAAAAGTGTCAGATCCACAATGCAGTCAAGGTCAAAC----ACGAGAATT------ACAG-AA-AGC--ACTA-------A-A-A-TAACCAACGATCCACGAGTAAATT----AGATTGTCAAATTTTTGGGACGGCCTATCCCTTCCTCTTGCCATTTGAA-C-GAAAAGG--TTTAC--ATGAG-ATGGC---TA---AT--T-A-----A----TGT--T-A------GCAC-------------TAA-AAC-------TGTAC-----------A------CTGAATATACA----AAAAATATT-T------------ACACTGCAAATTACATGTTTATTGTGTTCGACTTGCTAATC--AATGC-TTTCT-AGGGAGCggacacatcttatttgtccaaaggactggtccctgtataataatatttggaaataagcaggtggatgagtaaatttaattacacttaatt
gi|5 : agaatactaagttcCCAGTAAT-TAAC-C--TCTAC--TACCTGG-AGCGATAACTTCCCAA----------------C----ATAA--ATC------ACACTAA-A----ATTCC-----CA-A---CGAC--ACGA---TC-----AACT----GGATTGTCAAATTTTCGGGAAGTCCTCTACCTTCCTCGAGACA----AT-T-GAAAAGGTTTTTAT--A--AA-ATGGC---TA---AAAAA-C-----AAAT---T--T-A------AAACGC----C-AGCACTAA-AAC-------TA--C-----------ACTAATTCT------ACA----AGCA-TATC-A------------ACACCGa
gi|6 : ttttatttcaacgtataC-AACAGC--ACTAAAATGACC-A-A-TGAC--AAAA---AC-----AATTTTTAAAATT-TCAAATATTTGGGAC---CTGTCCCTAATTTAGGACA----AG-C-GGAAAGG--TATAC--A----------------------T-A-----AGATATG------------------G---A-ATAAATAC-AAC-------TA-GC-----------A------CT------ACATCTAAAC--TATTCT------------GCAAAGCAAATCACATGTTTATTGTTTTttttgggtttgtttgtatt
gi|7 : cgtacaagacaatctgacaagggaatatatagtaggactgGTGTCGGA--CACAC--------------AAC----GTGG--AT---------AC-AA-GGTCAACTAC-----CGGA-A-TTAA--AAGA---CC-----AATA----AAAT-GTCAAATTGTCGGGACGACCTGTCCCTTCactt
gi|7 : ------------ACACTACAAATTACATATTTATTGTTTTGGACTGGCTAAT-------------T-ACTGAGCGAATgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttacttgtaacactacaaattacatatttattgttttggactggctaattactgagcgaat
gi|8 : gtgtcggacacacaacgtggatacaaggtcaactaccggaattaaaagaccaataaaatgtcaaattgtcgggacgacctgtcccttcgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttacttgta-A-A-TGAC--ACAA---AC-----AAT-------GCTGCTAAAGTTTTGGAATGGCCCATCCCTTTTTCAGGATA----AA-C-GAAAAAA--GTTAC--AT-AATATGGTGAATA---AAAAC-G-----GAGTACAT--T-A------A-ACACGAGACAAGAAATAATAGCACAATAATA-GC-----------A------CA------ACA----AGTG-CATT-
gi|9 : accaacatgacc-AA-AGT--ACTA-------A-A-A-TGAC--A--A---AC-----GATT----TGA--GC---ATTTTCGG-ACGACCCGTCCCTTCTTCGTAACA----AA-C-GAAAAAG--TTTGCATA--AG-ATAGG---CA---ACGATCC-----AAATAAAT--T-A------GCAC------T-ACAAAC-A-CAC-------TA-AA-----------T------CT------ACA----AACG-TGTT-T------------ACACTGCAAA-CGCATGCTTATTGattcaaagtttcttgt
blockSeqs : T ATG AAAAAAAAACT C . G T A G A T A ACATTTTTTTGAATG A . T . CCA . T T CA C CCAT CTCG C TCCT . CACATCCGGCGA TTA T G ATGCAGTCAAGGTCAAAC GA TCGTCAA T GGTCA AAATGACC AG CA CG TCC GAGTA TTTA GACATG TTTG TT TT ATAATATGGTGAATAAAAACGGAGTACATTAAACACGAGACA T ACAATAA T ACAACAGCTAAA GAATAT TGTATATCTATGAAAGTATAC AAT T A A A AC CT T AA T
blockSeqs : A . . T . CACTCGA AAA G T AAATTGAT . T . CAGC CCGG A . CA . . . GACCCA . T . AAAATGGTTATAAGATAAAATATATTCAGTACATGC . . . ACTAATT . TCTAAACTATTCT T . G . C AA . . . G
blockSeqs : . CCTCTAC AT T C AAAC . T . CGC TTA A . CG . . . GGCCTA . C . ATAAGATAGGCAACGATCCAAATAAATTAGCACT . . . A . AAAAATATTT A . A . C AA
blockSeqs : GA A T CAAC . C . AGC CCA A . CG . . . GTCCTC . T . AAAATGGCTAAAAAACAAATTTAAAACGCC . . . A . TCTAGAATT A . T . G .
blockSeqs : T . AC . . . AGT TA A . AA . . . GACCTG . C . ATGAGATGGCTAATTAATGTTAGCAC . . . A . AGCACATTT . . . . C
blockSeqs : . GA A A . AG . . . GGCCCA . C . ATAAGATAGAAATACATGTATGTA . . . A . AGCATATCA
blockSeqs : . A A A . CA . . . GACCCG . C . ATAAGATATGGA . . . A . AACGTGTTT
blockSeqs : . . A . . . CTG . . . T .
blockSeqs : . . . . . .
blockSeqCons : AAAC****************** CCA****** A** GACCCG C**
originalCons : TGATGTCATTATCGATACANTCTATCACTACTACAT-GAGTTAGGAAAAA-A-A---ATTGAACAATGACGGCGAANAAGTTAGAGNAAATAATCCCGAAATTCTAAAATGNCGCNTANTACACANTCCTTGTGTACATTTTTTTGAATGCCTCTCTTGAAATCAAAATCCTTATGATANAAGTGAGCATCCATCATCCATCANCATCCGNCNNCCGTTNNNNCNNNNTCNCANNCTCCATTAAT-CAACAC--TCGAC--TACCTGNTAGTGTCGGATTCACAA--------------AAC----ACGA--ATT------ACAC-AA-AGC--ACTAN-----CA-A-A-TGAC--ACGA---AC-----AATT----AGATTGTCAAATTTTCGGGACGACCCGTCCCTTCTTCAGGACA----AA-C-GAAAAGG--TTTAC--A--AA-ATGGT---TA---AAGAT-A-----AAATACGT--T-A------GTACGCG---C-ATAAATAA-AAC-------TA-GC-----------A------CT------ACA----AGCG-TATT-T------------ACACTGCAAATCACATGTTTATTGTTTTTGGCTTGCAAATC--TATGC-TNTCT-ACGGAGCGANTTAAAT--TCTAACGCGTCGTA--TAATTCCANAAAACGTCACAAAACATGGGGAATTTCTGAA
finalCons : TGATGTCATTATCGATACANTCTATCACTACTACAT-GAGTTAGGAAAAA-A-A---ATTGAACAATGACGGCGAANAAGTTAGAGNAAATAATCCCGAAATTCTAAAATGNCGCNTANTACACANTCCTTGTGTACATTTTTTTGAATGCCTCTCTTGAAATCAAAATCCTTATGATANAAGTGAGCATCCATCATCCATCANCATCCGNCNNCCGTTNNNNCNNNNTCNCANNCTCCATTAAT-CAACAC--TCGAC--TACCTGNTAGTGTCGGATTCACAAAAC------------------ACGA--ATT------ACAC-AA-AGC--ACTACCA------AA--TGAC--ACGA---AC-----AATT----AGATTGTCAAATTTTCGGGACGACCCGTCCCTTCTTCAGGACA----AAC--GAAAAGG--TTTAC--A--AA-ATGGT---TA---AAGAT-A-----AAATACGT--T-A------GTACGCG---C-ATAAATAA-AAC-------TA-GC-----------A------CT------ACA----AGCG-TATT-T------------ACACTGCAAATCACATGTTTATTGTTTTTGGCTTGCAAATC--TATGC-TNTCT-ACGGAGCGANTTAAAT--TCTAACGCGTCGTA--TAATTCCANAAAACGTCACAAAACATGGGGAATTTCTGAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAAAGTTTACATAAGATAAATATAGAATAAAAATAAAACTAGCACTTTATCATCTAAACTAAATCCACAAAAAAGAACACATTCTTTATTCCGTATTTATTTTT
Unaligned ( gi|13 ): AAAGTTTACATAAGATAAATATAGAATAAATAAAACTAGCACTATATCATCTAAACTAAATCCACAAAAGAGAACACATTCTTTATTCCGTATTTATTTT
Alignments
lowQualScore : 333 5555555555555 222 1 555555555555555 1 11 1 222 1 2222 1 444444444444 5555555555555555555555 2222222 2222222222222 11111 1111 9999999999999999999999999999999999999999999999999999999999999999 1111111 222222222222222222 111111 111 222222222222 111 11 1 11
lowQualScore : 0 1 333 5555555555555 0 1 111 1 5 1 2 1 1 1 666666666666666 5 88 1 5 000 5 1 1 22 2 4444 4444 1 0000 0 444444444444 0 777 7 1 1111111111111111111111 0 99 0000000 5 777777 3333333333333 4 55 66 777 00000 8888 3 1 1 55 0000 888 0 66 2222222222222222222222222222222222222222222222222222222222222222 0 4 4444444 4 777777777777777777 222222 9999 777 444 4 000000000000 0 222 6 3 6 1 44 88 2 88 1
lowQualScore : . . ... ............. . . ... . . . . . . . ............... . .. . . ... . . . .. . .... .... . .... . ............ . ... . . ...................... . .. ....... . ...... ............. . .. .. ... ..... .... . . . .. .... ... . .. ................................................................ . . ....... . .................. ...... .... ... ... . ............ . ... . . . . .. .. . .. .
lowQualScore : 7 0 000 0000000000000 7 0 000 0 5 0 5 0 0 0 000000000000000 5 55 0 5 555 0 0 0 00 5 0000 0000 0 0000 0 555555555555 2 888 5 5 3333333333333333333333 7 22 8888888 0 888888 8888888888888 1 55 44 000 00000 5555 2 6 4 33 6666 000 2 99 3333333333333333333333333333333333333333333333333333333333333333 7 4 4444444 4 888888888888888888 888888 4444 888 111 0 555555555555 3 888 7 3 7 0 66 33 0 33 0
consensus : TGATGTCATTATCGATACANTCTATCACTACTACAT-GAGTTAGGAAAAA-A-A---ATTGAACAATGACGGCGAANAAGTTAGAGNAAATAATCCCGAAATTCTAAAATGNCGCNTANTACACANTCCTTGTGTACATTTTTTTGAATGCCTCTCTTGAAATCAAAATCCTTATGATANAAGTGAGCATCCATCATCCATCANCATCCGNCNNCCGTTNNNNCNNNNTCNCANNCTCCATTAAT-CAACAC--TCGAC--TACCTGNTAGTGTCGGATTCACAA--------------AAC----ACGA--ATT------ACAC-AA-AGC--ACTA------CCA-AA-TGAC--ACGA---AC-----AATT----AGATTGTCAAATTTTCGGGACGACCCGTCCCTTCTTCAGGACA----AA-C-GAAAAGG--TTTAC--A--AA-ATGGT---TA---AAGAT-A-----AAATACGT--T-A------GTACGCG---C-ATAAATAA-AAC-------TA-GC-----------A------CT------AC----A---AGCG-TATT-T------------ACACTGCAAATCACATGTTTATTGTTTTTGGCTTGCAAATC--TATGC-TNTCT-ACGGAGCGANTTAAAT--TCTAACGCGTCGTA--TAATTCCANAAAACGTCACAAAACATGGGGAATTTCTGAA
Reference ( family-3075 ) : TGATGTCATTATCGATACANTCTATCACTACTACAT-GAGTTAGGAAAAA-A-A---ATTGAACAATGACGGCGAANAAGTTAGAGNAAATAATCCCGAAATTCTAAAATGNCGCNTANTACACANTCCTTGTGTACATTTTTTTGAATGCCTCTCTTGAAATCAAAATCCTTATGATANAAGTGAGCATCCATCATCCATCANCATCCGNCNNCCGTTNNNNCNNNNTCNCANNCTCCATTAAT-CAACAC--TCGAC--TACCTGNTAGTGTCGGATTCACAA--------------AAC----ACGA--ATT------ACAC-AA-AGC--ACTA------CCA-AA-TGAC--ACGA---AC-----AATT----AGATTGTCAAATTTTCGGGACGACCCGTCCCTTCTTCAGGACA----AA-C-GAAAAGG--TTTAC--A--AA-ATGGT---TA---AAGAT-A-----AAATACGT--T-A------GTACGCG---C-ATAAATAA-AAC-------TA-GC-----------A------CT------AC----A---AGCG-TATT-T------------ACACTGCAAATCACATGTTTATTGTTTTTGGCTTGCAAATC--TATGC-TNTCT-ACGGAGCGANTTAAAT--TCTAACGCGTCGTA--TAATTCCANAAAACGTCACAAAACATGGGGAATTTCTGAA
gi|1 : TGATGTCATTATTAATACACTCTATCATTACTACATCGAGTTAGGAAAAACATA---ATTGAACAATGACGATGAAGAAGTTAGAGTAAA-AATCCCGAAATTCTAAAATGCCCCTTAATACACACTCCTTGTGT---------------CTTCTCTTGAA-TCAAAATTCTTATGATAAAAGTGAGCAT---TCATCCATCAACATCCGATACCTGTTAGTGCGGATTCACAAA----ATTGATACAA-------G---------GTTAATG----GTTAACA-----------------C----ATGA--ATT------ACCC-AA-AGC--ACTAA-----CCA-CG-TGAC--ACTA---AC-----TATT----AGATTGTCAAATCTTTGGGA-----------TTCTTCAGGACA----AAAT-GAAAATG--CTTTC--A--TA-TT--T---TACATAAGAT-A-----AAATATGCACT-ACCGGGTATACATG---T-ATAGATAA-AAT-------TA-GC-----------A------CT------AA----A---AGTT-CAGT-T------------GGACTGCAAATCACATGTTTATTATTTTTGGATTGTAAATC--TGTGT-TTTCT-ATGGAGCGACTAAAAT--TCTGACGCGTCGTA--TAATTCCAAACAACGTCACAAAACATGTGGAATTTCTG
gi|10 : catttcctgttgtttagaaataaatgcatctctCTGAT--TGTCGGATGCACAA--------------AATTGATACAA--GTTCGTCAAACAC-AA--GA--ATTA------T-A-AA-T-AC--A-AA---GC-----AATT----AAATTGTCGAATTTTCGGGACGACATGTCCCTTCTTCAG
gi|11 : TGTCATTATCAGTACATTCTATTACAACTGCATGGAGTTAGAAAAAA-A-AACTATTGAAGAAGGACAGCGAACAAtgtatatcatttgtagtaaattaggttaggatggaacacatt
gi|14 : cacttcctgtcgtcacattggatgcgtcacttcc---AAGAT-ATCTGAAAATATGT-----------ATACG-A---T-ATAAATAA-AAC-------TA-GC-----------A------CT------AC----ATCTAG----AAT-T------------ACACTGCAAATAACAGGTTTATTGTTTTAAGCTTG
gi|15 : acG-TACT-T------------GCACTGCAAAGTGCATGTTTATTGCTTTTGGCCTGCAGATCAATATGC-TATCT-AAGGA
gi|16 : acaaaattaatAGCG--CTAAATCTTCTATTGCATTGTAAACAATCCCATAAAACGTCACAAAACATGGGAAACTTCTGAA
gi|2 : TGATGTCATTATCGATAAAATCAATCACTACTAC------TTAG------------------ACAGTGACAGCAGATAA---AGAGGAAATAATTCTGAAATTCTAAAATGATGTATATTACACAATCCTTGTGTACATTTTTTTGAATGTCTCTCTTGAAATCAA--TCTTTATGATATA-GTGAACATCCATCATCCAT-ATCATCCATCCATCCTTCCATCCTCGTTCCATCCTCCATCAAT-CAACAC--TCGA---TATCTGTTAGTGGCGGATTCACAA--------------AAC----ATGA--ATT------ACAC-AA-CGC--GCTA------TTA-AAGTGAC--ACGA---AC-----AATT----AGAATGTCAAATCTTTGGAACGACCCATCCCTTCTCCAGTACA----TA-TTGAAAATA--ATTAC--A--AA-ATGGT---TAT--AAGAT-A-----AAATATAT--TCA------GTACATG---C-ATAGATAA-ATT-------TA-GC-----------A------CT------AC----A---AGCA-CATT-T------------ACACTGCAAATTACTTGTTTAGTATTTTTGGATTGTAAATC--TGTGT-TGTTT-ACGGAGCGACTTAAAT--TCCAA-AAGTCCTA--TAATTCCAGAAAGCGTCACAAAACATTGGGGATTTCTGAA
gi|3 : ------CCA-AC-T-AC--ACAA---AC-----AATT----ACATTGTAAAATTTTTGAGAC------TCCCTTCTTTAGGACA----AA-T-GAAGAGG--TTTAC--------AT-----------AAGAT-AG----AAATACAT-----------GTATGTA-----ATAAATAA-AAC-------TA-GCACAACAGCTAAA------CT------AC----A---TGTA-TATC-TATGAAAGTATACACACTGTAAATCACATATATATTGTTTTTGGCTTGCAATTC--AATGCTTATTTAACAGAGTGAATTAatg
gi|4 : -CAACACATCCGGCGATACGTAAAAGTGTCAGATCCACAATGCAGTCAAGGTCAAAC----ACGAGAATT------ACAG-AA-AGC--ACTA--------A-AA-TAACCAACGATCCACGAGTAAATT----AGATTGTCAAATTTTTGGGACGGCCTATCCCTTCCTCTTGCCATTTGAA-C-GAAAAGG--TTTAC--ATGAG-ATGGC---TA---AT--T-A-----A----TGT--T-A------GCAC-------------TAA-AAC-------TGTAC-----------A------CTGAATATAC----A---AAAAATATT-T------------ACACTGCAAATTACATGTTTATTGTGTTCGACTTGCTAATC--AATGC-TTTCT-AGGGAGCggacacatcttatttgtccaaaggactggtccctgtataataatatttggaaataagcaggtggatgagtaaatttaattacacttaatt
gi|5 : agaatactaagttcCCAGTAAT-TAAC-C--TCTAC--TACCTGG-AGCGATAACTTCCCAA----------------C----ATAA--ATC------ACACTAA-A----ATTC------CCA-A--CGAC--ACGA---TC-----AACT----GGATTGTCAAATTTTCGGGAAGTCCTCTACCTTCCTCGAGACA----AT-T-GAAAAGGTTTTTAT--A--AA-ATGGC---TA---AAAAA-C-----AAAT---T--T-A------AAACGC----C-AGCACTAA-AAC-------TA--C-----------ACTAATTCT------AC----A---AGCA-TATC-A------------ACACCGa
gi|6 : ttttatttcaacgtataC-AACAGC--ACTAAAATGACCA-A--TGAC--AAAA---AC-----AATTTTTAAAATT-TCAAATATTTGG---GACCTGTCCCTAATTTAGGACA----AG-C-GGAAAGG--TATAC------------------------AT-A-----AGATATG------------------G---A-ATAAATAC-AAC-------TA-GC-----------A------CT------ACATCTA---AAC--TATTCT------------GCAAAGCAAATCACATGTTTATTGTTTTttttgggtttgtttgtatt
gi|7 : cgtacaagacaatctgacaagggaatatatagtaggactgGTGTCGGA--CACAC--------------AAC----GTGG--AT---------AC-AA-GGTCAACTA------CCGGAA-TTAA--AAGA---CC-----AATA----AAAT-GTCAAATTGTCGGGACGACCTGTCCCTTCactt
gi|7 : ------------ACACTACAAATTACATATTTATTGTTTTGGACTGGCTAAT-------------T-ACTGAGCGAATgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttacttgtaacactacaaattacatatttattgttttggactggctaattactgagcgaat
gi|8 : gtgtcggacacacaacgtggatacaaggtcaactaccggaattaaaagaccaataaaatgtcaaattgtcgggacgacctgtcccttcgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttacttgta-AAC--ATGA------CCA-A--TGAC--ACAA---AC-----AAT-------GCTGCTAAAGTTTTGGAATGGCCCATCCCTTTTTCAGGATA----AA-C-GAAAAAA--GTTAC--AT-AATATGGTGAATA---AAAAC-G-----GAGTACAT--T-A------A-ACACGAGACAAGAAATAATAGCACAATAATA-GC-----------A------CA------AC----A---AGTG-CATT-
gi|9 : acc-AA-AGT--ACTA--------A-AA-TGAC--A--A---AC-----GATT----TGA--GC---ATTTTCGG-ACGACCCGTCCCTTCTTCGTAACA----AA-C-GAAAAAG--TTTGCATA--AG-ATAGG---CA---ACGATCC-----AAATAAAT--T-A------GCAC------T-ACAAAC-A-CAC-------TA-AA-----------T------CT------AC----A---AACG-TGTT-T------------ACACTGCAAA-CGCATGCTTATTGattcaaagtttcttgt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAAAGTTTACATAAGATAAATATAGAATAAAAATAAAACTAGCACTTTATCATCTAAACTAAATCCACAAAAAAGAACACATTCTTTATTCCGTATTTATTTTT
Unaligned ( gi|13 ): AAAGTTTACATAAGATAAATATAGAATAAATAAAACTAGCACTATATCATCTAAACTAAATCCACAAAAGAGAACACATTCTTTATTCCGTATTTATTTT