lowQualScore : 2222222222 1 333333333 2 1111111 33333333 2 222 11111 11 111 111 33333333 11 11 555555555555555555 222222 2 2 444444444444 22222222 1111111 1111111 11 333333 1 2 1 22222222 33 44 2222 2 2222 1
lowQualScore : 8 9999999999 6 666666666 3 6 6 5555555 5 6 66666666 6 6 6 6 99 6 1 3 333 11111 5 11 000 5 0 5 99 5 000 1 77 5 0 66666666 5 5 777 44 3 2 5 33 66 4 999999999999999999 111111 5 2 77 66 1 3 66 66 88 777777777777 66 99999999 4444444 0 22 999 66 6666666 44 111111 1 6 5 6 77 1 22222222 77 11 3 5 55 55 5 5 4 4 555 99 4 9999 3 4 4 6666 4 55 5 0 5 0 5 0000 66 0 5 66 777 4 4 66 44 4 4
lowQualScore : . .......... . ......... . . . ....... . . ........ . . . . .. . . . ... ..... . .. ... . . . .. . ... . .. . . ........ . . ... .. . . . .. .. . .................. ...... . . .. .. . . .. .. .. ............ .. ........ ....... . .. ... .. ....... .. ...... . . . . .. . ........ .. .. . . .. .. . . . . ... .. . .... . . . .... . .. . . . . . .... .. . . .. ... . . .. .. . .
lowQualScore : 0 8888888888 0 222222222 7 7 7 2222222 2 7 22222222 7 7 7 7 22 7 7 7 000 66666 7 99 111 0 2 0 44 7 000 7 66 7 4 55555555 0 0 111 66 4 5 0 00 99 5 333333333333333333 000000 7 9 99 11 9 2 22 11 88 999999999999 99 22222222 1111111 1 44 000 99 2222222 44 111111 4 0 7 0 99 1 44444444 99 44 0 7 00 11 0 0 4 4 444 55 4 4444 9 4 4 9999 4 44 0 0 0 1 0 6666 99 0 0 99 888 4 4 11 77 4 4
consensus : ACT-TATAA----GATGG-ATTTAC-TTGT-C--T---GAAGTT-GCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTA-CCCGC-G---GT-CTTTT--GT--AC-CCAATTTCCTTCACCCGT-TGT-TATA-AAA---CTATA-TATTA-TGAGATGTAAA----CT--GCAA-GTTAA-AGGCTA-A-TAC-TTTTAACGTAT-TATTATA--TCATAGATTGGT--GT---AA-TA-GCACTAACAAAAA--AT--AAA-TTCGG--ATCTCGCTCTCCTTCAGTAGAT--ATAAGGCGGGTAAAG--TTAAAAA-NTCGC----T------GATTT--C-TNCG--AAAATT----TCTGATGATAAA-A-C--G-------GTCGTTGTACA-TTT-AATATC-CACTTTCAA-CACT-CA--AANTTTGTG-T-A-GAA--CAAAGC--ACGAT-TATTGNTGAAA-TGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAACA--TCGC-AT----AGGATCGCCGAG-AG-TGGAATAT-TATG-TACC-CATCC-CAAAACG-GCG----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGC
Reference ( gi|3 ) : ACT-TATAA----GATGG-ATTTAC-TTG--C--T---GAAGTTTGCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTG--ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTTTCAGTTAAGGT-A-CCCGC-G---GT-CTTTT--GT--AC-CCAATTTCCTTCACCCGT-TGC-TATA-AAA---CTATA-TATTA-TGAGATATAAA----C---GCAA-GTTAA-AGGCTA-A-TAC-TTTTAACGTAT-TATTATA--TCATAGATTGGTTTGT---AA-TA-ACAGTAACAAAAA--AT--AAA-T-CGG--ATCTCACTCTCCTTCAGTAGAT--ATAAAGCACGTAAAG--TTAAAAA-TTCGC-C--T------GATTT--C-GACG--AAAATT----TCTGATGATAAA-A-C--G-------GTCGTTGTACAATTTGAATATC-CACTTCCAA-CACTTCA--AAGTTTGTG-T-A-GAA--CAAAGC-CACGAT-TATT--TGAAA-TGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAACA--TCGC-AT----AGGATCGCCGAG-AG-TAAAATAT-TATA-TACC-CA-CC-CAAAACG-GCG----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGC
gi|4 : ACT-TATAA----GATGGCATTTAC-TTGTTC--T---GAAGTT-GCATATCGCCTT-CGTTTCCAA--ATTCCGCCGTTC-TTTGTTATCCAAAT-CCCGCCG-TTCCTT--GGT-ATCTTT-CAGTTAAGGTTA-CCCGC-G---GT-CTTTTT-GT--AC-CCAATTTCC--CACC--T-TGT-TATA-AAATTACTATA-TATTA-TGAGATGTAAA----CT--GCAA-GTTAA-AGGCTA-A-TAC--TTTAACGTAT-TATAATGATTCATAGATTG---CGTGCAAA-TA-A-ACTAACAAAAA--AA--AAT-T-CGG--ATCTCACTCTCCTTCAGTAGAT--ATAAGCCACGTAAAG--TTAAAAA-ATTGCGC--T------GATTT--C-TCCC--GAAATT----TCTGATGATAAA-A-C--G-------GTCG-TGTAC-ATTT-AATATC-CACTTTCAA-CACCTCA--AAA-TTGTT-T-A--AA--CAAAGCACGCATT-TATTGATGAAA-GCAT-TCGTTCA-ATTCA-TTTCTGTT-TGTAAACAT-TCGC-AT----AGGATCGCCGAGCAG-T-GAATAT-TATATTACC-CATCC-CAAAACG-GCGT---T--TT-GACA--TCTTTGAC---CCGGTTCTT-T-GTATCC--GGCCC
gi|2 : ttACT-TATAA----GATG--ATTTACCTTG--TCTT---GAAGTT-GCATATCGC-TT-CGTT-CCAA--ATTCCGC-GTTC-TTTGTTATCCAAAT-CC-GC-G-TTC-TTTTGGT-ATCTTT-CAGTTAAGGTTA-CCCGC-G---GT-CTTTTTTGTGGAC-CCAATTTCCTTCACCCGTATGT-TATA-AAA---CTATA-TATTACTGAGATGTTAA----CACTGCAA-GTTAA-AGGCTA---TAC-TT--AAC-TCG-TATTATA--TCATAGATTGGT--GC---AAATA-AACTTAACAAAAA--ATTTAAA-TTCGGGAATCTCACTCTCCTTCAGTAGAT--ATAA-GCACGTAA-G--TTAAAAA-TTCGC----T------GATTT--C-TCCG--AAA-TT----TCTGATGATAAA-A-C--G-------GTCGT-GTACA-TTT-AATATC-CACTTTCAAACACT-CA--AATTTTGTT-T-A-GAAACCAAAGC--AC-AT-TATTGATGAAAATGAT-T-GT-CA-ATTCATTTTCTG---TGAAAACA--TCGC-AT----AGGATCGCCGAG-AG-T-GAATA---ATA-TACC-CA-TC-CAAAACG-GCG----TTGTT-GA-A--TCTTTGAC---CC-GTTCTTCT-G-ATCC--GGCCCG-GTTC-ATAGTATC-CG-ATACCCG
gi|1 : tACTGTATAT----GA--G-AATTACGTTG--C--TCTGGAAGATTGCATATCGC-TTTCGTTTCCAACAATTCCGC-GTTCATTTGT-ATCCAAATTCCCTC-GGCTG-CT--GGTGATCTTT-CAGTTAAGGT-C-CCCGCTG---GTTCTTTG--GT--ACGCCAATT-CCTTCACCCGC-TGTGTATATAAA---CGACACTATAC-TGAGAAATAAGAATCT---GCAATGTTAACAGGCTA-AATAC-TCTTAACGTAT-TTATATA--TCATAGATT-GTTAGTA--AA-TA-A-AATAAC--AAA--AT--AAATT-CGG--ATCT-ACTCTCCTTCAGT-GATTAATAAGTCACGTAAAGGTTTAAAAA-TTCGG-CGATTTTTTAGATTT--C-TCCG---GAATTCTGATCTGATGATAAACA-CGTG-------GTCGTCGTACA---TCCATATCTCACTTTCAA-CACTTCAATAAATTT-TGCT-ACGAA--CAAAG--CACGATATATGA-TGAAA-TGATAT-GTTCAGATTCA--TTCTG-TCTGT-AACATCTCGC-AT----A-GATCGCCGAG-AG-TGGAATATCCGTA-TACCGCA-TT-C-TAACGTGCGGTTAT--TT-GA-A--TCTTTGACCCACCGGTTCTT-T-GTATCCGTGACCCGTCTTC-TTAGTATCACGAA-ACCCGcg
gi|10 : ttACT-TATAA----TATGGGATTTAC-TTGT-C--T---GAAGTT-GCATATAGT-TT-T----------------C-GTT---------TCCAAAT-TCCGC-G-TTC-TT--TGT-TCCCTTTCAGTTAAGAT-AACCCGC-A---GT-CTTTT--GT--AC-CGAATTTCCTTCACCTGT-TG
gi|8 : ttCT-TATAATTCGGATT--ATTTCC-CTAT-C--T---GAAGTT-GCTTATCAC-TT-TGTT----------CTGT-GT---------ATCCAAAT-TCCGC-G-TTC-TT--AGT-ATC-CTTCACTTTAGGTAA-CCCGC-G---GT-CCTAT--TT---C-CCAATTTCCTTCACTC-----C-TATA-AA-----T------TTA-TGATATGT-----------------------GGCTATA-TATATTTAAATGTAC-TA-TATA--TCATAGTTTGATt
gi|5 : cgTGCATATCGC-TT-CGTTTCCAA--ATTC-GC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTA-CCCGC-G----T-CTTTT--GT--AC-CCAATTTCCTTCACTCGT-TGT-TA-A-AAA---CTATA-TATTA-TGAGATATAAA----CT--GCAA-GTTAA-AGGCTA-A-T---CTTTAACGTATCTAT-ATA--T-ATAGATTGGT--GT---AA-AT-GCACTAACAAAAATAAT--AAA-TTCGG--ATCTCGCTCTCCTTCGGTAGAT--ATAA-GCGGGTAAAG--TTGAAAA-ATCGT----T------GATTTTTC-AA-G--AAAATT----TCTGATAATAAA-AAC--G-------GTCGTGGTAT--TTCTAATATC-CACTTTCAA-CACT-CA--AATTTTGT--T-A-GAG--CAAAGC--ACGAT-TATTGTTGAA--TGAT-T-GTTTA-ATTCA-TTTCT--T-TATAAACA--TCGCTCT----AGAATAGCTGAG-AA-TGAA-TAT-TATG-TACC-CATCC-CAAAACG-GCG----T--TT-TA-AATTCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTT-TTTGTATC-CGAATACCCGGCggaaataa
gi|15 : ccgaaaaT-A-CCCGC-TTATAT-CTACT--GT--AC-CCAATTTCCTTCACCTGT-TGT-TATA-ATA---CTATA-AATTA-TGAGATATAAA----CT--GCAA-gt
gi|13 : taacttTTCT--GT-----CCAAACTTTTTCATCCGT-TGT-TATA-AAA---TTTTG-AATTA-TGAAATAAAAA----CT--GCAA-GTCAA-ACGTTA-A-TA--TTCTAAT---T-TATTATA--T-ATAG
gi|6 : tAGATTTAAC----T---GCAA-TTTAA-AGGCTA-A-TA--TTTTAACGTAT-TAT-GTA--TTACAGATTGGT--GT---A--TATGCACTTACAAAAA---T--AAA-TTCGG--ATCTTGCTCTCCTTCAGTAGAA--ATAA-GCGGGTAAAG--TTGAAAA-ATCGT----T------GATTT--T-TAAG--AAA-TT----TCTGATAATCAA-A-C--G-------GTGGT-GTACA-TTT-AATATT-CACTTTCAA-CACT-CA--AGATTT-TG-A-AAGAG--CAAAGC--ACGAT-TATTGCTGAAA-TGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAACA--TCGC-TT----AGAATGGCTGAG-AT-TGAG-TAT-TATG-TACC-CATCC-CAAAACG-GCT----T--TTTAA-A--TCTTTGAC---CCGGTTCTT-T-GTATCA--GACCCA-TTTT-TTTATATC-TGAATACCCGGgcgg
gi|7 : TAA-AGGCTA-A-TGT-TTT--ATGTAT-TAT-ATA--TCATAGGTTGG---GT---AC-CT-GCAGTAACAAAAA---T--AAA-TTCAG--TTCTCGCTCTCCTTCAGTAGAT--ATAA-GCAGGTCAAG--TTAAAAAATTCGC----T------GATTT--C-TCAG--AAA--T----TCTGCTG-TAAA---C--G-------GTCGT-GTACA--TTCAATATCACACTTTCAA-CACT-CA--AATTTTGT--T-A-GAA--CAAAGC--ACGAT-TATTGCTGAAA-TGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAACA--TCGC-AT----AGGATCGCCGAG-AG-T-AAATAT-TATG-TACC-CATCC-CAAATTG-GCA----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-TAGTATCC---ACCC--GTTCATTAGTATC-GAAATACCCG
gi|12 : -T-CGC--ATGCCGCTCTCCTTCTGTAGAT--GT-AGGCTTGTAAA---TTGGA-------------------GATCT--CAGAAA--AAAA--------TGATAATAAA-G-C--G-------A-CGGTGTTTA--TTGAAT
gi|15 : CAGTAGAT--AT-AAGCGGGTAAAG--TTAgctagtattcact
gi|14 : AT--ATAA-GCGGGTAAAG--TTAAAAA-TTCAC-------------TTT--C-AACACTCAAATT----TTTG-T--TAGA-A-C--GAAGCACTGTTATTGTTCAATTtacccaatttccttcacctgttgttataatactataaattatgagatataaactgcaa
gi|14 : GTA-AAGTTAAAAATT-CACTTTCAA-CACT-CA--AATTTT-TG-TTA-GAA--CGAAGC-----AC-TGTT----------AT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAACA--catttctgttgtaaaca
gi|11 : atataagcggA-TGAT-T-GATCA-ATTTA-TTTTTG-T-TGTGCACA--GTGC-AT----ACAATCGCCAAG-AGGTAA--TAT-TATG-TACT-TA-TCACAAAACG-GCGT---T--TT-AA-A--TCTCTGAC---TCCGTTCCT-T-
gi|9 : TCA-ATTCA-TTTCTG-C-CGTGAAC---TTGC-ATGCACACTATCGCTGAG-AG-TGAG-TAT-CATG-TA-----------AAACA-GTG----T--TTTAA-A--TGCTCAAC---CTGGTTCTT-T-GTGTCT--GGCCCA-GTTC-TTTGTATC-TGAATACCCAGCag
gi|16 : tgattaaaTTCTG-T-TGTAAACA--TCGC-AT----ACGATCGCCGAG-AT-T-GAATGT-TAT
gi|18 : TCTGAC---CTGGTTTTT-T-GTATCC--GA
gi|18 : tgTGTCT--GACCTG-GTTT-TTTGTATC-CGAATACTCGGCatactcggcatg
gi|21 : CG-GTTT-TTTGTATC-CGAATACCCGGCatg
gi|20 : -GTTT-TTTGTATC-CGAATACCCGGCgt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): GATGCAGAGCTCTACGTAGTTGTGACGCACTTTTTCATTGTGAC
Unaligned ( gi|19 ): GGCTGTGTGTGGTAATATTTATTGAAAACTTTTA
Alignments
lowQualScore : 1111 22 1 111 1 1 11111 11111 11 11 1 11111 1111 1 11 222222222222 1111111 11 11111111 1111 22 11 1111
lowQualScore : 6 4444 00 3 111 5 5 5 5 5 1 5 77 0 5 5 1 5 0 5 5 5 77 5 5 5 55555 5 4 66 888 4 4 4 5 888 0 55 5 1 4 33333 4 4 555 11 2 1 4 99 66 2 5 11 0 5 77777 0 5 77 0000 66 66 5 88 66 2 11 111111111111 7777 4444444 5 5 66 44 4 44444444 8 5 5 5555 5 1 22 5 66 5 77 55 5 2 0 4 4 4 4 3 3 3 7777 88 4 2 4 1 77 4 4 4 0 4 4 8888 66 4 4 66 777 4 4 66 4 4 4
lowQualScore : . .... .. . ... . . . . . . . .. . . . . . . . . . .. . . . ..... . . .. ... . . . . ... . .. . . . ..... . . ... .. . . . .. .. . . .. . . ..... . . .. .... .. .. . .. .. . .. ............ .... ....... . . .. .. . ........ . . . .... . . .. . .. . .. .. . . . . . . . . . . .... .. . . . . .. . . . . . . .... .. . . .. ... . . .. . . .
lowQualScore : 7 2222 00 3 555 7 7 7 7 7 4 0 99 7 7 7 4 7 7 7 7 7 99 7 7 5 11111 0 4 11 000 4 4 4 0 888 4 55 0 7 4 00000 4 4 333 99 0 1 4 66 11 9 0 99 0 0 99999 7 7 99 9999 99 99 0 88 99 8 99 222222222222 2222 1111111 0 0 99 44 4 44444444 9 0 0 6666 0 0 00 0 99 0 55 11 0 8 1 4 4 4 0 6 6 6 7777 66 0 5 0 6 33 0 4 4 1 4 4 3333 11 4 4 11 888 4 4 11 0 0 0
consensus : ACT-TATAA----GATGG-ATTTAC-TTG-T-CT-G-AAG-TT-GCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-C-TTTT--GT--AC-CCAATTTCCTTCACCCGT-TGT-TATA-AA---ACTATA-TATTA-TGAGATAT-AA-A---CTGCAA-GTTAA-AGGCTA-A-TAC-TTTTAACGTAT-TATTATA--TCATAGATTG-GT--GT-A-A-TAGCACT-AACAAAA--AAT--AAATTCGG--ATCTCGCTCTCCTTCAGTAGAT--ATAAGGCGCGTAAAG--TTAAAAANT--CG----C-T-----GATTTCTCC--GAAAATT----TCTGATGAT-AAA-AC--GGTCGTTGTACA-TT------T-AATATC-CACTTTCAA-CA-CT----CAA-ATTTTGT--TA-GAA--CAAAGC-ACG-A-TTAT-TGNTGAAA-TGAT-T-GTTCA-ATTCATTT-CTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-GAATAT-TATG-TACC-CATCCCAAAACG-GC-G----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGC
Reference ( family-3019 ) : ACT-TATAA----GATGG-ATTTAC-TTG-T-CT-G-AAG-TT-GCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-C-TTTT--GT--AC-CCAATTTCCTTCACCCGT-TGT-TATA-AA---ACTATA-TATTA-TGAGATGT-AA-A---CTGCAA-GTTAA-AGGCTA-A-TAC-TTTTAACGTAT-TATTATA--TCATAGATTG-GT--GT-A-A-TAGCACT-AACAAAA--AAT--AAATTCGG--ATCTCGCTCTCCTTCAGTAGAT--ATAAGGCGGGTAAAG--TTAAAAANT--CG----C-T-----GATTTCTNC--GAAAATT----TCTGATGAT-AAA-AC--GGTCGTTGTACA-TT------T-AATATC-CACTTTCAA-CA-CT----CAA-ANTTTGTG-TA-GAA--CAAAGC-ACG-A-TTAT-TGNTGAAA-TGAT-T-GTTCA-ATTCATTT-CTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGTGGAATAT-TATG-TACC-CATCCCAAAACG-GC-G----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGC
gi|1 : ACTGTATAT----GA--G-AATTACGTTGCT-CT-GGAAGATT-GCATATCGC-TTTCGTTTCCAACAATTCCGC-GTTCATTTGT-ATCCAAATTCCCTC-GGCTG-CT--GGTGATCTTT-CAGTTAAGGTC-CCCGCTG---GTTC-TTTG--GT--ACGCCAATT-CCTTCACCCGC-TGTGTATATAA---ACGACACTATAC-TGAGAAAT-AA-GAATCTGCAATGTTAACAGGCTA-AATAC-TCTTAACGTAT-TTATATA--TCATAGATTG-TTA-GTAA-A-TAA-AAT-AAC--AA--AAT--AAATTCGG--ATCT-ACTCTCCTTCAGT-GATTAATAAGTCACGTAAAGGTTTAAAAATT--CGGCGAT-TTTTTAGATTTCTCC--G-GAATTCTGATCTGATGAT-AAACACGTGGTCGTCGTACA-TC------C--ATATCTCACTTTCAA-CA-CTTCAATAA-ATTTTGC--TACGAA--CAAAGC-ACG-A--TATATGATGAAA-TGATAT-GTTCAGATTCA-TT-CTG-TCTGT-AAC----ATCTCGC-ATA-GATCGCCGAG-AGTGGAATATCCGTA-TACCGCATTCT--AACGTGC-GGTTAT--TT-GA-A--TCTTTGACCCACCGGTTCTT-T-GTATCCGTGACCCGTCTTC-TTAGTATCACGAA-ACCCG
gi|10 : ttACT-TATAA----TATGGGATTTAC-TTG-T-CT-G-AAG-TT-GCATATAGT-TTTCGTTTCCAA--ATTCCGC-GTTC-TTTGT--------T-CCC--------------------TTT-CAGTTAAGATAACCCGC-A---GT-C-TTTT--GT--AC-CGAATTTCCTTCACCTGT-TGT-
gi|11 : ttA-TGAT-T-GATCA-ATTTATTT-TTG-T-TGTGCAC----A--GTGC-ATACAATCGCCAAG-AG-GTAATAT-TATG-TACT-TATCACAAAACG-GC-GT---T--TT-AA-A--TCTCTGAC---TCCGTTCCT-T-
gi|12 : TCGC--ATGCCGCTCTCCTTCTGTAGAT--GT-AGGCTTGTAAA---TTGGA--------------------GATCTCAGA--AAAAA-------ATGATAAT-AAA-GC--GA-CGGTGTTTA-TTGAATGCT-AGTATT-CACTag
gi|13 : -TTCT--GT-----CCAAACTTTTTCATCCGT-TGT-TATA-AA---ATTTTG-AATTA-TGAAATAA-AA-A---CTGCAA-GTCAA-ACGTTA-A-TA--TTCTAAT---T-TATTATA--T-ATAG
gi|14 : t-TT------A-AAAATT-CACTTTCAA-CA-CT----CAA-ATTTT-TGTTA-GAA--CGAAGC-AC---------TGTT-------AT-T-GTTCA-ATTCATTT-CTG-T-TGTAAAC----A--gcgg
gi|15 : atataagcgggtaaagTTACCCGC-TTATAT-C-TACT--GT--AC-CCAATTTCCTTCACCTGT-TGT-TATA-AT---ACTATA-AATTA-TGAGATAT-AA-A---CTGCAA-
gi|16 : taactTT-CTG-T-TGTAAAC----A--TCGC-ATACGATCGCCGAG-A-TTGAATGT-TAT
gi|18 : TGTCT--GACCTG-GTTT-TTTGTATC-CGAATACTCGGC
gi|2 : ACT-TATAA----GATG--ATTTACCTTG-T-CTTG-AAG-TT-GCATATCGC-TT-CGTT-CCAA--ATTCCGC-GTTC-TTTGTTATCCAAAT-CC-GC-G-TTC-TTTTGGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-C-TTTTTTGTGGAC-CCAATTTCCTTCACCCGTATGT-TATA-AA---ACTATA-TATTACTGAGATGTTAACA---CTGCAA-GTTAA-AGGCTA---TAC-TT--AAC-TCG-TATTATA--TCATAGATTG-GT--GC-A-AATAA-ACTTAACAAAA--AATTTAAATTCGGGAATCTCACTCTCCTTCAGTAGAT--ATAAG-CACGTAA-G--TTAAAAATT--CG----C-T-----GATTTCTCC--GAAA-TT----TCTGATGAT-AAA-AC--GGTCGT-GTACA-TT------T-AATATC-CACTTTCAAACA-CT----CAA-ATTTTGTT-TA-GAAACCAAAGC-AC--A-TTAT-TGATGAAAATGAT-T-GT-CA-ATTCATTTTCTG-T--GAAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-GAATA---ATA-TACC-CAT-CCAAAACG-GC-G----TTGTT-GA-A--TCTTTGAC---CC-GTTCTTCT-G-ATCC--GGCCCG-GTTC-ATAGTATC-CG-ATACCCGatg
gi|20 : t-GTTT-TTTGTATC-CGAATACCCGGCcg
gi|21 : CG-GTTT-TTTGTATC-CGAATACCCGGCgtgtg
gi|3 : ACT-TATAA----GATGG-ATTTAC-TTG---CT-G-AAG-TTTGCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTG--ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTTTCAGTTAAGGT-ACCCGC-G---GT-C-TTTT--GT--AC-CCAATTTCCTTCACCCGT-TGC-TATA-AA---ACTATA-TATTA-TGAGATAT-AA-A---C-GCAA-GTTAA-AGGCTA-A-TAC-TTTTAACGTAT-TATTATA--TCATAGATTG-GTTTGT-A-A-TAACAGT-AACAAAA--AAT--AAAT-CGG--ATCTCACTCTCCTTCAGTAGAT--ATAAAGCACGTAAAG--TTAAAAATT--CG----CCT-----GATTTCGAC--GAAAATT----TCTGATGAT-AAA-AC--GGTCGTTGTACAATT------TGAATATC-CACTTCCAA-CA-CTT---CAA-AGTTTGTG-TA-GAA--CAAAGCCACG-A-TTAT-T--TGAAA-TGAT-T-GTTCA-ATTCATTT-CTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGTAAAATAT-TATA-TACC-CA-CCCAAAACG-GC-G----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGCgt
gi|4 : ACT-TATAA----GATGGCATTTAC-TTG-TTCT-G-AAG-TT-GCATATCGCCTT-CGTTTCCAA--ATTCCGCCGTTC-TTTGTTATCCAAAT-CCCGCCG-TTCCTT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-CTTTTT--GT--AC-CCAATTTCC--CACC--T-TGT-TATA-AAATTACTATA-TATTA-TGAGATGT-AA-A---CTGCAA-GTTAA-AGGCTA-A-TAC--TTTAACGTAT-TATAATGATTCATAGATTGCGT--GCAA-A-TAA-ACT-AACAAAA--AA---AAATTCGG--ATCTCACTCTCCTTCAGTAGAT--ATAAGCCACGTAAAG--TTAAAAAATTGCG----C-T-----GATTTCTCC--CGAAATT----TCTGATGAT-AAA-AC--GGTCG-TGTACA-TT------T-AATATC-CACTTTCAA-CACCT----CAA-AA-TTGTT-TA--AA--CAAAGC-ACGCATTTAT-TGATGAAA-GCAT-TCGTTCA-ATTCATTT-CTGTT-TGTAAAC----AT-TCGC-ATAGGATCGCCGAGCAGT-GAATAT-TATATTACC-CATCCCAAAACG-GC-GT---T--TT-GACA--TCTTTGAC---CCGGTTCTT-T-GTATCC--GGCCC
gi|5 : tt-CC-G-AAA-AT-GCATATCGC-TT-CGTTTCCAA--ATTC-GC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-----GT-C-TTTT--GT--AC-CCAATTTCCTTCACTCGT-TGT-TA-A-AA---ACTATA-TATTA-TGAGATAT-AA-A---CTGCAA-GTTAA-AGGCTA-A-T---CTTTAACGTATCTA-TATA--T-ATAGATTG-GT--GT-A-A-ATGCACT-AACAAAAATAAT--AAATTCGG--ATCTCGCTCTCCTTCGGTAGAT--ATAA-GCGGGTAAAG--TTGAAAAAT--CG----T-T-----GATTT-TTCAAGAAAATT----TCTGATAATAAAA-AC--GGTCGTGGTATT-TC------T-AATATC-CACTTTCAA-CA-CT----CAA-ATTTTGT--TA-GAG--CAAAGC-ACG-A-TTAT-TGTTG-AA-TGAT-T-GTTTA-ATTCATTT-CT--T-TATAAAC----A--TCGCTCTAGAATAGCTGAG-AAT-GAATAT-TATG-TACC-CATCCCAAAACG-GC-G----T--TT-TA-AATTCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTT-TTTGTATC-CGAATACCCGGC
gi|6 : AGATTT-AA-----CTGCAA-TTTAA-AGGCTA-A-TA--TTTTAACGTAT-TAT-GTA--TTACAGATTG-GT--GT-ATA-T-GCACT-TACAAAA--A-T--AAATTCGG--ATCTTGCTCTCCTTCAGTAGAA--ATAAG-CGGGTAAAG--TTGAAAAAT--CG----T-T-----GATTTTTAA--GAAA-TT----TCTGATAAT-CAA-AC--GGTGGT-GTACA-TT------T-AATATT-CACTTTCAA-CA-CT----CAAGATTTTG-A-AA-GAG--CAAAGC-ACG-A-TTAT-TGCTGAAA-TGAT-T-GTTCA-ATTCATTT-CTG-T-TGTAAAC----A--TCGC-TTAGAATGGCTGAG-A-TTGAGTAT-TATG-TACC-CATCCCAAAACG-GCTT----T--TT-AA-A--TCTTTGAC---CCGGTTCTT-T-GTATCA--GACCCA-TTTT-TTTATATC-TGAATACCCGGgt
gi|7 : TAA-AGGCTA-A-TGT-TTT--ATGTAT-TAT-ATA--TCATAGGTTG-G---GT-A-C-CTGCAGT-AACAAAA--A-T--AAATTCAG--TTCTCGCTCTCCTTCAGTAGAT--ATAAG-CAGGTCAAG--TTAAAAAATT-CG----C-T-----GATTTCTCA--GAAA--T----TCTGCTG-T-AAA--C--GGTCGT-GTACA-TT------C-AATATCACACTTTCAA-CA-CT----CAA-ATTTTGT--TA-GAA--CAAAGC-ACG-A-TTAT-TGCTGAAA-TGAT-T-GTTCA-ATTCATTT-CTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-AAATAT-TATG-TACC-CATCCCAAATTG-GC-A----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-TAGTATCC---ACCC--GTTCATTAGTATC-GAAATACCCG
gi|8 : CT-TATAATTCGGATT--ATTTCC-CTA-T-CT-G-AAG-TT-GCTTATCAC-TT-TGTT------------------C-TGTGT-ATCCAAAT-TCCGC-G-TTC-TT--AGT-ATCCTT-CACTTTAGGTAACCCGC-G---GT-C-CTAT--TT---C-CCAATTTCCTTCACTC-----C-TATA-AA-----T------TTA-TGATATGT----------------------GGCTATA-TATATTTAAATGTAC-TA-TATA--TCATAGTTTG-AT--GG-A-A-
gi|9 : cgTCA-ATTCATTT-CTG-C-CGTGAACTTGCA--T-GC-ACACTATCGCTGAG-AGTG-AGTAT-CATG-TA----------AAACA-GT-G----T--TTTAA-A--TGCTCAAC---CTGGTTCTT-T-GTGTCT--GGCCCA-GTTC-TTTGTATC-TGAATACCCAGCataa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GATGCAGAGCTCTACGTAGTTGTGACGCACTTTTTCATTGTGAC
Unaligned ( gi|19 ): GGCTGTGTGTGGTAATATTTATTGAAAACTTTTA
Alignments
lowQualScore : 1111 22 1 111 1 1 11111 111 1 11 11111111 22222 1 11 222222222222 1111 11 11111111 1111 1111
lowQualScore : 6 4444 00 3 111 5 5 5 5 5 1 5 77 0 5 5 1 5 0 5 5 5 77 5 5 5 88888 5 4 66 888 4 4 4 5 888 0 55 5 4 33333 4 4 4 4 555 1 4 0 66 2 5 11 77777777 66 00000 66 66 5 44 0 66 5 11 111111111111 77 5 33 0000 999 66 11 4 44444444 8 5 5 5555 5 0 5 666 5 66 5 77 55 5 2 55 4 4 4 4 444 7777 88 4 2 4 8 4 4 4 0 4 4 8888 66 4 4 66 777 4 4 66 4 4 4
lowQualScore : . .... .. . ... . . . . . . . .. . . . . . . . . . .. . . . ..... . . .. ... . . . . ... . .. . . ..... . . . . ... . . . .. . . .. ........ .. ..... .. .. . .. . .. . .. ............ .. . .. .... ... .. .. . ........ . . . .... . . . ... . .. . .. .. . . .. . . . . ... .... .. . . . . . . . . . . .... .. . . .. ... . . .. . . .
lowQualScore : 7 2222 00 3 555 7 7 7 7 7 4 0 99 7 7 7 4 7 7 7 7 7 99 7 7 5 99999 0 4 11 000 4 4 4 0 888 4 55 0 4 00000 4 4 4 4 444 1 4 2 11 9 0 99 99999999 44 77777 99 99 0 55 1 99 9 99 222222222222 55 1 44 6666 000 99 22 4 44444444 9 0 0 6666 0 1 0 111 0 99 0 55 11 0 8 11 4 4 0 0 111 7777 66 0 5 0 0 0 4 4 1 4 4 3333 11 4 4 11 888 4 4 11 0 0 0
consensus : ACT-TATAA----GATGG-ATTTAC-TTG-T-CT-G-AAG-TT-GCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-C-TTTT--GT--AC-CCAATTTCCTTCACCCGT-TGT-TATA-AA---ACTATA-TATTA-TGAGATAT-AA-A---CTGCAA-GTTAA-AGGCTA-A-TAC-TTTTAACGTAT-TATTATA--TCATAGATTG-GT--GTAA-ATAGCAC-TAACAAAAA--A--TAAATTCGG--ATCTCGCTCTCCTTCAGTAGAT--ATAAGGCGCGTAAAG--TTAAAAANT--CG----C-T-----GATTTCTCN-GAAAATT----TCTGATGATAAA-A-C--GGTCGTTGTACA-TT------T-AATATC-CACTTTC-AACA-CT----CAA-ATTTT-G-T-TA-GAA--CAAAGC-ACG-A-TTAT-TGNTG-AAATGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-GAATAT-TATG-TACC-CATCCCAAAACG-GC-G----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGC
Reference ( family-3019 ) : ACT-TATAA----GATGG-ATTTAC-TTG-T-CT-G-AAG-TT-GCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-C-TTTT--GT--AC-CCAATTTCCTTCACCCGT-TGT-TATA-AA---ACTATA-TATTA-TGAGATAT-AA-A---CTGCAA-GTTAA-AGGCTA-A-TAC-TTTTAACGTAT-TATTATA--TCATAGATTG-GT--GT-A-ATAGCAC-TAACAAAAA--A--TAAATTCGG--ATCTCGCTCTCCTTCAGTAGAT--ATAAGGCGCGTAAAG--TTAAAAANT--CG----C-T-----GATTTCTCC-GAAAATT----TCTGATGATAAA-A-C--GGTCGTTGTACA-TT------T-AATATC-CACTTTC-AACA-CT----CAA-ATTTT-G-T-TA-GAA--CAAAGC-ACG-A-TTAT-TGNTG-AAATGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-GAATAT-TATG-TACC-CATCCCAAAACG-GC-G----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGC
gi|1 : ACTGTATAT----GA--G-AATTACGTTGCT-CT-GGAAGATT-GCATATCGC-TTTCGTTTCCAACAATTCCGC-GTTCATTTGT-ATCCAAATTCCCTC-GGCTG-CT--GGTGATCTTT-CAGTTAAGGTC-CCCGCTG---GTTC-TTTG--GT--ACGCCAATT-CCTTCACCCGC-TGTGTATATAA---ACGACACTATAC-TGAGAAAT-AA-GAATCTGCAATGTTAACAGGCTA-AATAC-TCTTAACGTAT-TTATATA--TCATAGATTG-TTA-GTAA-ATAA-AA-TAAC--AAA--A--TAAATTCGG--ATCT-ACTCTCCTTCAGT-GATTAATAAGTCACGTAAAGGTTTAAAAATT--CGGCGAT-TTTTTAGATTTCTCC-G-GAATTCTGATCTGATGATAAACA-CGTGGTCGTCGTACA-TC------C--ATATCTCACTTTC-AACA-CTTCAATAA-ATTTT-G-C-TACGAA--CAAAGC-ACG-A--TATATGATG-AAATGATAT-GTTCAGATTCA--TTCTG-TCTGT-AAC----ATCTCGC-ATA-GATCGCCGAG-AGTGGAATATCCGTA-TACCGCATTCT--AACGTGC-GGTTAT--TT-GA-A--TCTTTGACCCACCGGTTCTT-T-GTATCCGTGACCCGTCTTC-TTAGTATCACGAA-ACCCG
gi|10 : ttACT-TATAA----TATGGGATTTAC-TTG-T-CT-G-AAG-TT-GCATATAGT-TTTCGTTTCCAA--ATTCCGC-GTTC-TTTGT--------T-CCC--------------------TTT-CAGTTAAGATAACCCGC-A---GT-C-TTTT--GT--AC-CGAATTTCCTTCACCTGT-TGT-
gi|11 : ttATGAT-T-GATCA-ATTTA-TTTTTG-T-TGTGCAC----A--GTGC-ATACAATCGCCAAG-AGG-TAATAT-TATG-TACT-TATCACAAAACG-GC-GT---T--TT-AA-A--TCTCTGAC---TCCGTTCCT-T-
gi|12 : TCGC--ATGCCGCTCTCCTTCTGTAGAT--GT-AGGCTTGTAAA---TTGGAGA----------------------TCTCA-GAAAA-A----AATGATAATAAA-G-C--GA-CGGTGTTTA-TTGAATGCT-AGTATT-CACTag
gi|13 : -TTCT--GT-----CCAAACTTTTTCATCCGT-TGT-TATA-AA---ATTTTG-AATTA-TGAAATAA-AA-A---CTGCAA-GTCAA-ACGTTA-A-TA--TTCTAAT---T-TATTATA--T-ATAG
gi|14 : t-TT------A-AAAATT-CACTTTC-AACA-CT----CAA-ATTTTTG-T-TA-GAA--CGAAGC-AC---------TGTT-------AT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--gcgg
gi|15 : atataagcgggtaaagTTACCCGC-TTATAT-C-TACT--GT--AC-CCAATTTCCTTCACCTGT-TGT-TATA-AT---ACTATA-AATTA-TGAGATAT-AA-A---CTGCAA-
gi|16 : taactTTCTG-T-TGTAAAC----A--TCGC-ATACGATCGCCGAG-ATT-GAATGT-TAT
gi|18 : TGTCT--GACCTG-GTTT-TTTGTATC-CGAATACTCGGC
gi|2 : ACT-TATAA----GATG--ATTTACCTTG-T-CTTG-AAG-TT-GCATATCGC-TT-CGTT-CCAA--ATTCCGC-GTTC-TTTGTTATCCAAAT-CC-GC-G-TTC-TTTTGGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-C-TTTTTTGTGGAC-CCAATTTCCTTCACCCGTATGT-TATA-AA---ACTATA-TATTACTGAGATGTTAACA---CTGCAA-GTTAA-AGGCT--A-TAC---TTAAC-TCG-TATTATA--TCATAGATTG-GT--GCAA-ATAA-ACTTAACAAAAA--ATTTAAATTCGGGAATCTCACTCTCCTTCAGTAGAT--ATAA-GCACGT-AAG--TTAAAAATT--CG----C-T-----GATTTCTCC-G-AAATT----TCTGATGATAAA-A-C--GGTCG-TGTACA-TT------T-AATATC-CACTTTCAAACA-CT----CAA-ATTTT-GTT-TA-GAAACCAAAGC-AC--A-TTAT-TGATGAAAATGAT-T-G-TCA-ATTCATTTTCTG---TGAAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-GAATA---ATA-TACC-CAT-CCAAAACG-GC-G----TTGTT-GA-A--TCTTTGAC---CC-GTTCTTCT-G-ATCC--GGCCCG-GTTC-ATAGTATC-CG-ATACCCGatg
gi|20 : t-GTTT-TTTGTATC-CGAATACCCGGCcg
gi|21 : CG-GTTT-TTTGTATC-CGAATACCCGGCgtgtg
gi|3 : ACT-TATAA----GATGG-ATTTAC-TTG---CT-G-AAG-TTTGCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTG--ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTTTCAGTTAAGGT-ACCCGC-G---GT-C-TTTT--GT--AC-CCAATTTCCTTCACCCGT-TGC-TATA-AA---ACTATA-TATTA-TGAGATAT-AA-A---C-GCAA-GTTAA-AGGCTA-A-TAC-TTTTAACGTAT-TATTATA--TCATAGATTG-GTTTGT-A-ATAACAG-TAACAAAAA--A--TAAAT-CGG--ATCTCACTCTCCTTCAGTAGAT--ATAAAGCACGTAAAG--TTAAAAATT--CG----CCT-----GATTTCGAC-GAAAATT----TCTGATGATAAA-A-C--GGTCGTTGTACAATT------TGAATATC-CACTTCC-AACA-CTT---CAA-AGTTT-G-TGTA-GAA--CAAAGCCACG-A-TTAT-T--TG-AAATGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGTAAAATAT-TATA-TACC-CA-CCCAAAACG-GC-G----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGCgt
gi|4 : ACT-TATAA----GATGGCATTTAC-TTG-TTCT-G-AAG-TT-GCATATCGCCTT-CGTTTCCAA--ATTCCGCCGTTC-TTTGTTATCCAAAT-CCCGCCG-TTCCTT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-CTTTTT--GT--AC-CCAATTTCC--CACC--T-TGT-TATA-AAATTACTATA-TATTA-TGAGATGT-AA-A---CTGCAA-GTTAA-AGGCTA-A-TAC--TTTAACGTAT-TATAATGATTCATAGATTGCGT--GCAA-ATAA-AC-TAACAAAAA--A---AAATTCGG--ATCTCACTCTCCTTCAGTAGAT--ATAAGCCACGTAAAG--TTAAAAAATTGCG----C-T-----GATTTCTCC-CGAAATT----TCTGATGATAAA-A-C--GGTCG-TGTACA-TT------T-AATATC-CACTTTC-AACACCT----CAA-A-ATT-G-T-TT-AAA--CAAAGC-ACGCATTTAT-TGATG-AAAGCAT-TCGTTCA-ATTCA-TTTCTGTT-TGTAAAC----AT-TCGC-ATAGGATCGCCGAGCAGT-GAATAT-TATATTACC-CATCCCAAAACG-GC-GT---T--TT-GACA--TCTTTGAC---CCGGTTCTT-T-GTATCC--GGCCC
gi|5 : tt-CC-G-AAA-AT-GCATATCGC-TT-CGTTTCCAA--ATTC-GC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G----T-C-TTTT--GT--AC-CCAATTTCCTTCACTCGT-TGT-TA-A-AA---ACTATA-TATTA-TGAGATAT-AA-A---CTGCAA-GTTAA-AGGCTA-A-T---CTTTAACGTATCTAT-ATA--T-ATAGATTG-GT--GT-A-AATGCAC-TAACAAAAATAA--TAAATTCGG--ATCTCGCTCTCCTTCGGTAGAT--ATAAG-CGGGTAAAG--TTGAAAAAT--CG----T-T-----GATTTTTCAAGAAAATT----TCTGATAATAAA-AAC--GGTCGTGGTATT-TC------T-AATATC-CACTTTC-AACA-CT----CAA-ATTTT-G-T-TA-GAG--CAAAGC-ACG-A-TTAT-TGTTG--AATGAT-T-GTTTA-ATTCA-TTTCT--T-TATAAAC----A--TCGCTCTAGAATAGCTGAG-AAT-GAATAT-TATG-TACC-CATCCCAAAACG-GC-G----T--TT-TA-AATTCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTT-TTTGTATC-CGAATACCCGGC
gi|6 : AGATTT-AA-----CTGCAA-TTTAA-AGGCTA-A-TA--TTTTAACGTAT-TAT-GTA--TTACAGATTG-GT--GT-ATAT-GCAC-TTACAAAAA-----TAAATTCGG--ATCTTGCTCTCCTTCAGTAGAA--ATAAG-CGGGTAAAG--TTGAAAAAT--CG----T-T-----GATTTTTAA-GAAA-TT----TCTGATAATCAA-A-C--GGT-GGTGTACA-TT------T-AATATT-CACTTTC-AACA-CT----CAAGATTTT-G-A-AA-GAG--CAAAGC-ACG-A-TTAT-TGCTG-AAATGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--TCGC-TTAGAATGGCTGAG-ATT-GAGTAT-TATG-TACC-CATCCCAAAACG-GCTT----T--TT-AA-A--TCTTTGAC---CCGGTTCTT-T-GTATCA--GACCCA-TTTT-TTTATATC-TGAATACCCGGgt
gi|7 : TAA-AGGCTA-A-TGT-TTT--ATGTAT-TAT-ATA--TCATAGGTTG-G---GT-A-CCTGCAG-TAACAAAAA-----TAAATTCAG--TTCTCGCTCTCCTTCAGTAGAT--ATAAG-CAGGTCAAG--TTAAAAAATT-CG----C-T-----GATTTCTCA-GAAA--T----TCTGCTG-TAAA---C--GGTCGT-GTACA-TT------C-AATATCACACTTTC-AACA-CT----CAA-ATTTT-G-T-TA-GAA--CAAAGC-ACG-A-TTAT-TGCTG-AAATGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-AAATAT-TATG-TACC-CATCCCAAATTG-GC-A----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-TAGTATCC---ACCC--GTTCATTAGTATC-GAAATACCCG
gi|8 : CT-TATAATTCGGATT--ATTTCC-CTA-T-CT-G-AAG-TT-GCTTATCAC-TT-TGTT------------------C-TGTGT-ATCCAAAT-TCCGC-G-TTC-TT--AGT-ATCCTT-CACTTTAGGTAACCCGC-G---GT-C-CTAT--TT---C-CCAATTTCCTTCACTC-----C-TATA-AA-----T------TTA-TGATATGT----------------------GGCTATA-TATATTTAAATGTAC-TA-TATA--TCATAGTTTG-AT--GG-A-A
gi|9 : cgTCA-ATTCA-TTTCTG-C-CGTGAACTTGCA--T-GC-ACACTATCGCTGAG-AGT-GAGTAT-CATG-TA----------AAACA-GT-G----T--TTTAA-A--TGCTCAAC---CTGGTTCTT-T-GTGTCT--GGCCCA-GTTC-TTTGTATC-TGAATACCCAGCataa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GATGCAGAGCTCTACGTAGTTGTGACGCACTTTTTCATTGTGAC
Unaligned ( gi|19 ): GGCTGTGTGTGGTAATATTTATTGAAAACTTTTA
Alignments
lowQualScore : 1111 22 1 111 1 1 11111 11 1 11 111 111111 2 11 11111111 1111111 11 11111111 1111 1111
lowQualScore : 6 4444 00 3 111 5 5 5 5 5 1 5 77 0 5 5 1 5 0 5 5 5 77 5 5 5 88888 5 4 66 888 4 4 4 5 888 0 55 5 4 33333 4 4 555 11 2 1 4 0 66 2 5 11 0 999 0 5 888888 66 66 1 44 66 5 11 55 66 88888888 4444444 999 66 11 4 44444444 8 5 5 5555 5 0 5 5 5 5 66 5 77 55 5 2 0 4 4 4 4 3 3 3 7777 88 4 2 4 8 4 4 4 0 4 4 8888 66 4 4 66 777 4 4 66 4 4 4
lowQualScore : . .... .. . ... . . . . . . . .. . . . . . . . . . .. . . . ..... . . .. ... . . . . ... . .. . . ..... . . ... .. . . . . .. . . .. . ... . . ...... .. .. . .. .. . .. .. .. ........ ....... ... .. .. . ........ . . . .... . . . . . . .. . .. .. . . . . . . . . . . .... .. . . . . . . . . . . .... .. . . .. ... . . .. . . .
lowQualScore : 7 2222 00 3 555 7 7 7 7 7 4 0 99 7 7 7 4 7 7 7 7 7 99 7 7 5 99999 0 4 11 000 4 4 4 0 888 4 55 0 4 00000 4 4 333 99 0 1 4 2 11 9 0 99 1 999 7 7 777777 99 99 2 55 99 9 99 22 00 11111111 4444444 000 99 22 4 44444444 9 0 0 6666 0 1 0 0 0 0 99 0 55 11 0 8 1 4 4 4 0 6 6 6 7777 66 0 5 0 0 0 4 4 1 4 4 3333 11 4 4 11 888 4 4 11 0 0 0
consensus : ACT-TATAA----GATGG-ATTTAC-TTG-T-CT-G-AAG-TT-GCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-C-TTTT--GT--AC-CCAATTTCCTTCACCCGT-TGT-TATA-AA---ACTATA-TATTA-TGAGATAT-AA-A---CTGCAA-GTTAA-AGGCTA-A-TAC-TTTTAACGTAT-TATTATA--TCATAGATTG-GT--GTAAATAGCACT-AACAAAAA--AT--AAATTCGG--ATCTCGCTCTCCTTCAGTAGAT--ATAAG-CGCGTAAAG--TTAAAAANT--CGC-TGATTTCTCA-GA--------AAATT----TCTGATGATAAA-A-C--GGTCGTTGTACA-TT------T-AATATC-CACTTTCAA-CA-CT----CAA-ATTTT-GT-T-A-GAA--CAAAGC-ACG-A-TTAT-TGNTGAAA-TGAT-T-GTTCA-ATTCATTT-CTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-GAATAT-TATG-TACC-CATCCCAAAACG-GC-G----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGC
Reference ( family-3019 ) : ACT-TATAA----GATGG-ATTTAC-TTG-T-CT-G-AAG-TT-GCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-C-TTTT--GT--AC-CCAATTTCCTTCACCCGT-TGT-TATA-AA---ACTATA-TATTA-TGAGATAT-AA-A---CTGCAA-GTTAA-AGGCTA-A-TAC-TTTTAACGTAT-TATTATA--TCATAGATTG-GT--GTAAATAGCACT-AACAAAAA--AT--AAATTCGG--ATCTCGCTCTCCTTCAGTAGAT--ATAAGGCGCGTAAAG--TTAAAAANT--CGC-TGATTTCTCN-GA--------AAATT----TCTGATGATAAA-A-C--GGTCGTTGTACA-TT------T-AATATC-CACTTTCAA-CA-CT----CAA-ATTTT-GT-T-A-GAA--CAAAGC-ACG-A-TTAT-TGNTGAAA-TGAT-T-GTTCA-ATTCATTT-CTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-GAATAT-TATG-TACC-CATCCCAAAACG-GC-G----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGC
gi|1 : ACTGTATAT----GA--G-AATTACGTTGCT-CT-GGAAGATT-GCATATCGC-TTTCGTTTCCAACAATTCCGC-GTTCATTTGT-ATCCAAATTCCCTC-GGCTG-CT--GGTGATCTTT-CAGTTAAGGTC-CCCGCTG---GTTC-TTTG--GT--ACGCCAATT-CCTTCACCCGC-TGTGTATATAA---ACGACACTATAC-TGAGAAAT-AA-GAATCTGCAATGTTAACAGGCTA-AATAC-TCTTAACGTAT-TTATATA--TCATAGATTG-TTA-GTAAATAA-AAT-AAC--AAA--AT--AAATTCGG--ATCT-ACTCTCCTTCAGT-GATTAATAAGTCACGTAAAGGTTTAAAAATT--CGG-CGATTTTTTA-GATTTCTCCGGAATTCTGATCTGATGATAAACA-CGTGGTCGTCGTACA-TC------C--ATATCTCACTTTCAA-CA-CTTCAATAA-ATTTT-GC-T-ACGAA--CAAAGC-ACG-A--TATATGATGAAA-TGATAT-GTTCAGATTCA-TT-CTG-TCTGT-AAC----ATCTCGC-ATA-GATCGCCGAG-AGTGGAATATCCGTA-TACCGCATTCT--AACGTGC-GGTTAT--TT-GA-A--TCTTTGACCCACCGGTTCTT-T-GTATCCGTGACCCGTCTTC-TTAGTATCACGAA-ACCCG
gi|10 : ttACT-TATAA----TATGGGATTTAC-TTG-T-CT-G-AAG-TT-GCATATAGT-TTTCGTTTCCAA--ATTCCGC-GTTC-TTTGT--------T-CCC--------------------TTT-CAGTTAAGATAACCCGC-A---GT-C-TTTT--GT--AC-CGAATTTCCTTCACCTGT-TGT-
gi|11 : ttA-TGAT-T-GATCA-ATTTATTT-TTG-T-TGTGCAC----A--GTGC-ATACAATCGCCAAG-AGG-TAATAT-TATG-TACT-TATCACAAAACG-GC-GT---T--TT-AA-A--TCTCTGAC---TCCGTTCCT-T-
gi|12 : TCGC--ATGCCGCTCTCCTTCTGTAGAT--GT-AGGCTTGTAAA---TTGGAGA-------------TCTCA-GA--------AAA-A----AATGATAATAAA-G-C--GA-CGGTGTTTA-TTGAATGCT-AGTATT-CACTag
gi|13 : -TTCT--GT-----CCAAACTTTTTCATCCGT-TGT-TATA-AA---ATTTTG-AATTA-TGAAATAA-AA-A---CTGCAA-GTCAA-ACGTTA-A-TA--TTCTAAT---T-TATTATA--T-ATAG
gi|14 : t-TT------A-AAAATT-CACTTTCAA-CA-CT----CAA-ATTTTTGT-T-A-GAA--CGAAGC-AC---------TGTT-------AT-T-GTTCA-ATTCATTT-CTG-T-TGTAAAC----A--gcgg
gi|15 : atataagcgggtaaagTTACCCGC-TTATAT-C-TACT--GT--AC-CCAATTTCCTTCACCTGT-TGT-TATA-AT---ACTATA-AATTA-TGAGATAT-AA-A---CTGCAA-
gi|16 : taactTT-CTG-T-TGTAAAC----A--TCGC-ATACGATCGCCGAG-ATT-GAATGT-TAT
gi|18 : TGTCT--GACCTG-GTTT-TTTGTATC-CGAATACTCGGC
gi|2 : ACT-TATAA----GATG--ATTTACCTTG-T-CTTG-AAG-TT-GCATATCGC-TT-CGTT-CCAA--ATTCCGC-GTTC-TTTGTTATCCAAAT-CC-GC-G-TTC-TTTTGGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-C-TTTTTTGTGGAC-CCAATTTCCTTCACCCGTATGT-TATA-AA---ACTATA-TATTACTGAGATGTTAACA---CTGCAA-GTTAA-AGGCTA---TAC-TT--AAC-TCG-TATTATA--TCATAGATTG-GT--GCAAATAA-ACTTAACAAAAA--ATTTAAATTCGGGAATCTCACTCTCCTTCAGTAGAT--ATAAG-CACGTAA-G--TTAAAAATT--CGC-TGATTTCTCC-GA--------AA-TT----TCTGATGATAAA-A-C--GGTCGT-GTACA-TT------T-AATATC-CACTTTCAAACA-CT----CAA-ATTTT-GT-TTA-GAAACCAAAGC-AC--A-TTAT-TGATGAAAATGAT-T-GT-CA-ATTCATTTTCTG-T--GAAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-GAATA---ATA-TACC-CAT-CCAAAACG-GC-G----TTGTT-GA-A--TCTTTGAC---CC-GTTCTTCT-G-ATCC--GGCCCG-GTTC-ATAGTATC-CG-ATACCCGatg
gi|20 : t-GTTT-TTTGTATC-CGAATACCCGGCcg
gi|21 : CG-GTTT-TTTGTATC-CGAATACCCGGCgtgtg
gi|3 : ACT-TATAA----GATGG-ATTTAC-TTG---CT-G-AAG-TTTGCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTG--ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTTTCAGTTAAGGT-ACCCGC-G---GT-C-TTTT--GT--AC-CCAATTTCCTTCACCCGT-TGC-TATA-AA---ACTATA-TATTA-TGAGATAT-AA-A---C-GCAA-GTTAA-AGGCTA-A-TAC-TTTTAACGTAT-TATTATA--TCATAGATTG-GTTTGTAA-TAACAGT-AACAAAAA--AT--AAAT-CGG--ATCTCACTCTCCTTCAGTAGAT--ATAAAGCACGTAAAG--TTAAAAATT--CGCCTGATTTCGAC-GA--------AAATT----TCTGATGATAAA-A-C--GGTCGTTGTACAATT------TGAATATC-CACTTCCAA-CA-CTT---CAA-AGTTT-GTGT-A-GAA--CAAAGCCACG-A-TTAT-T--TGAAA-TGAT-T-GTTCA-ATTCATTT-CTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGTAAAATAT-TATA-TACC-CA-CCCAAAACG-GC-G----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGCgt
gi|4 : ACT-TATAA----GATGGCATTTAC-TTG-TTCT-G-AAG-TT-GCATATCGCCTT-CGTTTCCAA--ATTCCGCCGTTC-TTTGTTATCCAAAT-CCCGCCG-TTCCTT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-CTTTTT--GT--AC-CCAATTTCC--CACC--T-TGT-TATA-AAATTACTATA-TATTA-TGAGATGT-AA-A---CTGCAA-GTTAA-AGGCTA-A-TAC--TTTAACGTAT-TATAATGATTCATAGATTGCGT--GCAAATAA-ACT-AACAAAAA--A---AAATTCGG--ATCTCACTCTCCTTCAGTAGAT--ATAAGCCACGTAAAG--TTAAAAAATTGCGC-TGATTTCTCC-CG--------AAATT----TCTGATGATAAA-A-C--GGTCG-TGTACA-TT------T-AATATC-CACTTTCAA-CACCT----CAA-A-ATT-GT-T-T-AAA--CAAAGC-ACGCATTTAT-TGATGAAA-GCAT-TCGTTCA-ATTCATTT-CTGTT-TGTAAAC----AT-TCGC-ATAGGATCGCCGAGCAGT-GAATAT-TATATTACC-CATCCCAAAACG-GC-GT---T--TT-GACA--TCTTTGAC---CCGGTTCTT-T-GTATCC--GGCCC
gi|5 : tt-CC-G-AAA-AT-GCATATCGC-TT-CGTTTCCAA--ATTC-GC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G----T-C-TTTT--GT--AC-CCAATTTCCTTCACTCGT-TGT-TA-A-AA---ACTATA-TATTA-TGAGATAT-AA-A---CTGCAA-GTTAA-AGGCTA-A-T---CTTTAACGTATCTAT-ATA--T-ATAGATTG-GT--GTAAAT-GCACT-AACAAAAATAAT--AAATTCGG--ATCTCGCTCTCCTTCGGTAGAT--ATAAG-CGGGTAAAG--TTGAAAAAT--CGT-TGATTTTTCAAGA--------AAATT----TCTGATAATAAA-AAC--GGTCGTGGTATT-TC------T-AATATC-CACTTTCAA-CA-CT----CAA-ATTTT-GT-T-A-GAG--CAAAGC-ACG-A-TTAT-TGTTG-AA-TGAT-T-GTTTA-ATTCATTT-CT--T-TATAAAC----A--TCGCTCTAGAATAGCTGAG-AAT-GAATAT-TATG-TACC-CATCCCAAAACG-GC-G----T--TT-TA-AATTCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTT-TTTGTATC-CGAATACCCGGC
gi|6 : AGATTT-AA-----CTGCAA-TTTAA-AGGCTA-A-TA--TTTTAACGTAT-TAT-GTA--TTACAGATTG-GT--GTATAT-GCACT-TACAAAAA---T--AAATTCGG--ATCTTGCTCTCCTTCAGTAGAA--ATAAG-CGGGTAAAG--TTGAAAAAT--CGT-TGATTTTTAA-GA--------AA-TT----TCTGATAATCAA-A-C--GGT-GGTGTACA-TT------T-AATATT-CACTTTCAA-CA-CT----CAAGATTTT-GA-A-A-GAG--CAAAGC-ACG-A-TTAT-TGCTGAAA-TGAT-T-GTTCA-ATTCATTT-CTG-T-TGTAAAC----A--TCGC-TTAGAATGGCTGAG-ATT-GAGTAT-TATG-TACC-CATCCCAAAACG-GCTT----T--TT-AA-A--TCTTTGAC---CCGGTTCTT-T-GTATCA--GACCCA-TTTT-TTTATATC-TGAATACCCGGgt
gi|7 : TAA-AGGCTA-A-TGT-TTT--ATGTAT-TAT-ATA--TCATAGGTTG-G---GTACCT-GCAGT-AACAAAAA---T--AAATTCAG--TTCTCGCTCTCCTTCAGTAGAT--ATAAG-CAGGTCAAG--TTAAAAAATT-CGC-TGATTTCTCA-GA--------AA--T----TCTGCTG-TAAA---C--GGTCGT-GTACA-TT------C-AATATCACACTTTCAA-CA-CT----CAA-ATTTT-GT-T-A-GAA--CAAAGC-ACG-A-TTAT-TGCTGAAA-TGAT-T-GTTCA-ATTCATTT-CTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-AAATAT-TATG-TACC-CATCCCAAATTG-GC-A----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-TAGTATCC---ACCC--GTTCATTAGTATC-GAAATACCCG
gi|8 : CT-TATAATTCGGATT--ATTTCC-CTA-T-CT-G-AAG-TT-GCTTATCAC-TT-TGTT------------------C-TGTGT-ATCCAAAT-TCCGC-G-TTC-TT--AGT-ATCCTT-CACTTTAGGTAACCCGC-G---GT-C-CTAT--TT---C-CCAATTTCCTTCACTC-----C-TATA-AA-----T------TTA-TGATATGT----------------------GGCTATA-TATATTTAAATGTAC-TA-TATA--TCATAGTTTG-AT--GGAAATA
gi|9 : cgTCA-ATTCATTT-CTG-C-CGTGAACTTGCA--T-GC-ACACTATCGCTGAG-AGT-GAGTAT-CATG-TA----------AAACA-GT-G----T--TTTAA-A--TGCTCAAC---CTGGTTCTT-T-GTGTCT--GGCCCA-GTTC-TTTGTATC-TGAATACCCAGCa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GATGCAGAGCTCTACGTAGTTGTGACGCACTTTTTCATTGTGAC
Unaligned ( gi|19 ): GGCTGTGTGTGGTAATATTTATTGAAAACTTTTA
Alignments
lowQualScore : 1111 22 1 111 1 1 11111 111 1 11 111 22222 1 11 11111111 1111 11 11111111 1111 1111
lowQualScore : 6 4444 00 3 111 5 5 5 5 5 1 5 77 0 5 5 1 5 0 5 5 5 77 5 5 5 88888 5 4 66 888 4 4 4 5 888 0 55 5 4 33333 4 4 4 4 555 1 4 0 66 2 5 11 0 999 66 00000 66 66 5 0 44 0 66 5 11 55 5 88888888 33 0000 999 66 11 4 44444444 8 5 5 5555 5 0 5 666 5 66 5 77 55 5 2 55 4 4 4 4 444 7777 88 4 2 4 8 4 4 4 0 4 4 8888 66 4 4 66 777 4 4 66 4 4 4
lowQualScore : . .... .. . ... . . . . . . . .. . . . . . . . . . .. . . . ..... . . .. ... . . . . ... . .. . . ..... . . . . ... . . . .. . . .. . ... .. ..... .. .. . . .. . .. . .. .. . ........ .. .... ... .. .. . ........ . . . .... . . . ... . .. . .. .. . . .. . . . . ... .... .. . . . . . . . . . . .... .. . . .. ... . . .. . . .
lowQualScore : 7 2222 00 3 555 7 7 7 7 7 4 0 99 7 7 7 4 7 7 7 7 7 99 7 7 5 99999 0 4 11 000 4 4 4 0 888 4 55 0 4 00000 4 4 4 4 444 1 4 2 11 9 0 99 1 999 44 77777 99 99 0 0 55 1 99 9 99 22 0 11111111 44 6666 000 99 22 4 44444444 9 0 0 6666 0 1 0 111 0 99 0 55 11 0 8 11 4 4 0 0 111 7777 66 0 5 0 0 0 4 4 1 4 4 3333 11 4 4 11 888 4 4 11 0 0 0
consensus : ACT-TATAA----GATGG-ATTTAC-TTG-T-CT-G-AAG-TT-GCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-C-TTTT--GT--AC-CCAATTTCCTTCACCCGT-TGT-TATA-AA---ACTATA-TATTA-TGAGATAT-AA-A---CTGCAA-GTTAA-AGGCTA-A-TAC-TTTTAACGTAT-TATTATA--TCATAGATTG-GT--GTAAATAGCAC-TAACAAAAA--A--TAAATTCGG--ATCTCGCTCTCCTTCAGTAGAT--ATAA-G-CGCGTAAAG--TTAAAAANT--CGC-TGATTTCTCA-GA--------AAATT----TCTGATGATAAA-A-C--GGTCGTTGTACA-TT------T-AATATC-CACTTTC-AACA-CT----CAA-ATTTT-G-T-TA-GAA--CAAAGC-ACG-A-TTAT-TGNTG-AAATGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-GAATAT-TATG-TACC-CATCCCAAAACG-GC-G----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGC
Reference ( family-3019 ) : ACT-TATAA----GATGG-ATTTAC-TTG-T-CT-G-AAG-TT-GCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-C-TTTT--GT--AC-CCAATTTCCTTCACCCGT-TGT-TATA-AA---ACTATA-TATTA-TGAGATAT-AA-A---CTGCAA-GTTAA-AGGCTA-A-TAC-TTTTAACGTAT-TATTATA--TCATAGATTG-GT--GTAAATAGCAC-TAACAAAAA--A--TAAATTCGG--ATCTCGCTCTCCTTCAGTAGAT--ATAA-G-CGCGTAAAG--TTAAAAANT--CGC-TGATTTCTCA-GA--------AAATT----TCTGATGATAAA-A-C--GGTCGTTGTACA-TT------T-AATATC-CACTTTC-AACA-CT----CAA-ATTTT-G-T-TA-GAA--CAAAGC-ACG-A-TTAT-TGNTG-AAATGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-GAATAT-TATG-TACC-CATCCCAAAACG-GC-G----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGC
gi|1 : ACTGTATAT----GA--G-AATTACGTTGCT-CT-GGAAGATT-GCATATCGC-TTTCGTTTCCAACAATTCCGC-GTTCATTTGT-ATCCAAATTCCCTC-GGCTG-CT--GGTGATCTTT-CAGTTAAGGTC-CCCGCTG---GTTC-TTTG--GT--ACGCCAATT-CCTTCACCCGC-TGTGTATATAA---ACGACACTATAC-TGAGAAAT-AA-GAATCTGCAATGTTAACAGGCTA-AATAC-TCTTAACGTAT-TTATATA--TCATAGATTG-TTA-GTAAATAA-AA-TAAC--AAA--A--TAAATTCGG--ATCT-ACTCTCCTTCAGT-GATTAATAA-GTCACGTAAAGGTTTAAAAATT--CGG-CGATTTTTTA-GATTTCTCCGGAATTCTGATCTGATGATAAACA-CGTGGTCGTCGTACA-TC------C--ATATCTCACTTTC-AACA-CTTCAATAA-ATTTT-G-C-TACGAA--CAAAGC-ACG-A--TATATGATG-AAATGATAT-GTTCAGATTCA--TTCTG-TCTGT-AAC----ATCTCGC-ATA-GATCGCCGAG-AGTGGAATATCCGTA-TACCGCATTCT--AACGTGC-GGTTAT--TT-GA-A--TCTTTGACCCACCGGTTCTT-T-GTATCCGTGACCCGTCTTC-TTAGTATCACGAA-ACCCG
gi|10 : ttACT-TATAA----TATGGGATTTAC-TTG-T-CT-G-AAG-TT-GCATATAGT-TTTCGTTTCCAA--ATTCCGC-GTTC-TTTGT--------T-CCC--------------------TTT-CAGTTAAGATAACCCGC-A---GT-C-TTTT--GT--AC-CGAATTTCCTTCACCTGT-TGT-
gi|11 : ttATGAT-T-GATCA-ATTTA-TTTTTG-T-TGTGCAC----A--GTGC-ATACAATCGCCAAG-AGG-TAATAT-TATG-TACT-TATCACAAAACG-GC-GT---T--TT-AA-A--TCTCTGAC---TCCGTTCCT-T-
gi|12 : TCGC--ATGCCGCTCTCCTTCTGTAGAT--GTAG-G-CTTGTAAA---TTGGAGA-------------TCTCA-GA--------AAA-A----AATGATAATAAA-G-C--GA-CGGTGTTTA-TTGAATGCT-AGTATT-CACTag
gi|13 : -TTCT--GT-----CCAAACTTTTTCATCCGT-TGT-TATA-AA---ATTTTG-AATTA-TGAAATAA-AA-A---CTGCAA-GTCAA-ACGTTA-A-TA--TTCTAAT---T-TATTATA--T-ATAG
gi|14 : t-TT------A-AAAATT-CACTTTC-AACA-CT----CAA-ATTTTTG-T-TA-GAA--CGAAGC-AC---------TGTT-------AT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--gcgg
gi|15 : atataagcgggtaaagTTACCCGC-TTATAT-C-TACT--GT--AC-CCAATTTCCTTCACCTGT-TGT-TATA-AT---ACTATA-AATTA-TGAGATAT-AA-A---CTGCAA-
gi|16 : taactTTCTG-T-TGTAAAC----A--TCGC-ATACGATCGCCGAG-ATT-GAATGT-TAT
gi|18 : TGTCT--GACCTG-GTTT-TTTGTATC-CGAATACTCGGC
gi|2 : ACT-TATAA----GATG--ATTTACCTTG-T-CTTG-AAG-TT-GCATATCGC-TT-CGTT-CCAA--ATTCCGC-GTTC-TTTGTTATCCAAAT-CC-GC-G-TTC-TTTTGGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-C-TTTTTTGTGGAC-CCAATTTCCTTCACCCGTATGT-TATA-AA---ACTATA-TATTACTGAGATGTTAACA---CTGCAA-GTTAA-AGGCT--A-TAC---TTAAC-TCG-TATTATA--TCATAGATTG-GT--GCAAATAA-ACTTAACAAAAA--ATTTAAATTCGGGAATCTCACTCTCCTTCAGTAGAT--ATAA-G-CACGT-AAG--TTAAAAATT--CGC-TGATTTCTCC-G---------AAATT----TCTGATGATAAA-A-C--GGTCG-TGTACA-TT------T-AATATC-CACTTTCAAACA-CT----CAA-ATTTT-GTT-TA-GAAACCAAAGC-AC--A-TTAT-TGATGAAAATGAT-T-G-TCA-ATTCATTTTCTG---TGAAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-GAATA---ATA-TACC-CAT-CCAAAACG-GC-G----TTGTT-GA-A--TCTTTGAC---CC-GTTCTTCT-G-ATCC--GGCCCG-GTTC-ATAGTATC-CG-ATACCCGatg
gi|20 : t-GTTT-TTTGTATC-CGAATACCCGGCcg
gi|21 : CG-GTTT-TTTGTATC-CGAATACCCGGCgtgtg
gi|3 : ACT-TATAA----GATGG-ATTTAC-TTG---CT-G-AAG-TTTGCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTG--ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTTTCAGTTAAGGT-ACCCGC-G---GT-C-TTTT--GT--AC-CCAATTTCCTTCACCCGT-TGC-TATA-AA---ACTATA-TATTA-TGAGATAT-AA-A---C-GCAA-GTTAA-AGGCTA-A-TAC-TTTTAACGTAT-TATTATA--TCATAGATTG-GTTTGTAA-TAACAG-TAACAAAAA--A--TAAAT-CGG--ATCTCACTCTCCTTCAGTAGAT--ATAAAG-CACGTAAAG--TTAAAAATT--CGCCTGATTTCGAC-GA--------AAATT----TCTGATGATAAA-A-C--GGTCGTTGTACAATT------TGAATATC-CACTTCC-AACA-CTT---CAA-AGTTT-G-TGTA-GAA--CAAAGCCACG-A-TTAT-T--TG-AAATGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGTAAAATAT-TATA-TACC-CA-CCCAAAACG-GC-G----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGCgt
gi|4 : ACT-TATAA----GATGGCATTTAC-TTG-TTCT-G-AAG-TT-GCATATCGCCTT-CGTTTCCAA--ATTCCGCCGTTC-TTTGTTATCCAAAT-CCCGCCG-TTCCTT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-CTTTTT--GT--AC-CCAATTTCC--CACC--T-TGT-TATA-AAATTACTATA-TATTA-TGAGATGT-AA-A---CTGCAA-GTTAA-AGGCTA-A-TAC--TTTAACGTAT-TATAATGATTCATAGATTGCGT--GCAAATAA-AC-TAACAAAAA--A---AAATTCGG--ATCTCACTCTCCTTCAGTAGAT--ATAA-GCCACGTAAAG--TTAAAAAATTGCGC-TGATTTCTCC-CG--------AAATT----TCTGATGATAAA-A-C--GGTCG-TGTACA-TT------T-AATATC-CACTTTC-AACACCT----CAA-A-ATT-G-T-TT-AAA--CAAAGC-ACGCATTTAT-TGATG-AAAGCAT-TCGTTCA-ATTCA-TTTCTGTT-TGTAAAC----AT-TCGC-ATAGGATCGCCGAGCAGT-GAATAT-TATATTACC-CATCCCAAAACG-GC-GT---T--TT-GACA--TCTTTGAC---CCGGTTCTT-T-GTATCC--GGCCC
gi|5 : tt-CC-G-AAA-AT-GCATATCGC-TT-CGTTTCCAA--ATTC-GC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G----T-C-TTTT--GT--AC-CCAATTTCCTTCACTCGT-TGT-TA-A-AA---ACTATA-TATTA-TGAGATAT-AA-A---CTGCAA-GTTAA-AGGCTA-A-T---CTTTAACGTATCTAT-ATA--T-ATAGATTG-GT--GTAAAT-GCAC-TAACAAAAATAA--TAAATTCGG--ATCTCGCTCTCCTTCGGTAGAT--ATAA-G-CGGGTAAAG--TTGAAAAAT--CGT-TGATTTTTCAAGA--------AAATT----TCTGATAATAAA-AAC--GGTCGTGGTATT-TC------T-AATATC-CACTTTC-AACA-CT----CAA-ATTTT-G-T-TA-GAG--CAAAGC-ACG-A-TTAT-TGTTG--AATGAT-T-GTTTA-ATTCA-TTTCT--T-TATAAAC----A--TCGCTCTAGAATAGCTGAG-AAT-GAATAT-TATG-TACC-CATCCCAAAACG-GC-G----T--TT-TA-AATTCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTT-TTTGTATC-CGAATACCCGGC
gi|6 : AGATTT-AA-----CTGCAA-TTTAA-AGGCTA-A-TA--TTTTAACGTAT-TAT-GTA--TTACAGATTG-GT--GTATAT-GCAC-TTACAAAAA-----TAAATTCGG--ATCTTGCTCTCCTTCAGTAGAA--ATAA-G-CGGGTAAAG--TTGAAAAAT--CGT-TGATTTTTAA-GA--------AA-TT----TCTGATAATCAA-A-C--GGT-GGTGTACA-TT------T-AATATT-CACTTTC-AACA-CT----CAAGATTTT-G-A-AA-GAG--CAAAGC-ACG-A-TTAT-TGCTG-AAATGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--TCGC-TTAGAATGGCTGAG-ATT-GAGTAT-TATG-TACC-CATCCCAAAACG-GCTT----T--TT-AA-A--TCTTTGAC---CCGGTTCTT-T-GTATCA--GACCCA-TTTT-TTTATATC-TGAATACCCGGgt
gi|7 : TAA-AGGCTA-A-TGT-TTT--ATGTAT-TAT-ATA--TCATAGGTTG-G---GTACCT-GCAG-TAACAAAAA-----TAAATTCAG--TTCTCGCTCTCCTTCAGTAGAT--ATAA-G-CAGGTCAAG--TTAAAAAATT-CGC-TGATTTCTCA-GA--------AA--T----TCTGCTG-TAAA---C--GGTCGT-GTACA-TT------C-AATATCACACTTTC-AACA-CT----CAA-ATTTT-G-T-TA-GAA--CAAAGC-ACG-A-TTAT-TGCTG-AAATGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-AAATAT-TATG-TACC-CATCCCAAATTG-GC-A----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-TAGTATCC---ACCC--GTTCATTAGTATC-GAAATACCCG
gi|8 : CT-TATAATTCGGATT--ATTTCC-CTA-T-CT-G-AAG-TT-GCTTATCAC-TT-TGTT------------------C-TGTGT-ATCCAAAT-TCCGC-G-TTC-TT--AGT-ATCCTT-CACTTTAGGTAACCCGC-G---GT-C-CTAT--TT---C-CCAATTTCCTTCACTC-----C-TATA-AA-----T------TTA-TGATATGT----------------------GGCTATA-TATATTTAAATGTAC-TA-TATA--TCATAGTTTG-AT--GGAAATA
gi|9 : cgTCA-ATTCA-TTTCTG-C-CGTGAACTTGCA--T-GC-ACACTATCGCTGAG-AGT-GAGTAT-CATG-TA----------AAACA-GT-G----T--TTTAA-A--TGCTCAAC---CTGGTTCTT-T-GTGTCT--GGCCCA-GTTC-TTTGTATC-TGAATACCCAGCa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GATGCAGAGCTCTACGTAGTTGTGACGCACTTTTTCATTGTGAC
Unaligned ( gi|19 ): GGCTGTGTGTGGTAATATTTATTGAAAACTTTTA
Alignments
lowQualScore : 1111 22 1 111 1 1 11111 111 1 11 111 22222 1 11 11111111 1111 11 11111111 1111 1111
lowQualScore : 6 4444 00 3 111 5 5 5 5 5 1 5 77 0 5 5 1 5 0 5 5 5 77 5 5 5 88888 5 4 66 888 4 4 4 5 888 0 55 5 4 33333 4 4 4 4 555 1 4 0 66 2 5 11 0 999 66 00000 66 66 5 0 44 0 66 5 11 55 5 88888888 33 0000 999 66 11 4 44444444 8 5 5 5555 5 0 5 666 5 66 5 77 55 5 2 55 4 4 4 4 444 7777 88 4 2 4 8 4 4 4 0 4 4 8888 66 4 4 66 777 4 4 66 4 4 4
lowQualScore : . .... .. . ... . . . . . . . .. . . . . . . . . . .. . . . ..... . . .. ... . . . . ... . .. . . ..... . . . . ... . . . .. . . .. . ... .. ..... .. .. . . .. . .. . .. .. . ........ .. .... ... .. .. . ........ . . . .... . . . ... . .. . .. .. . . .. . . . . ... .... .. . . . . . . . . . . .... .. . . .. ... . . .. . . .
lowQualScore : 7 2222 00 3 555 7 7 7 7 7 4 0 99 7 7 7 4 7 7 7 7 7 99 7 7 5 99999 0 4 11 000 4 4 4 0 888 4 55 0 4 00000 4 4 4 4 444 1 4 2 11 9 0 99 1 999 44 77777 99 99 0 0 55 1 99 9 99 22 0 11111111 44 6666 000 99 22 4 44444444 9 0 0 6666 0 1 0 111 0 99 0 55 11 0 8 11 4 4 0 0 111 7777 66 0 5 0 0 0 4 4 1 4 4 3333 11 4 4 11 888 4 4 11 0 0 0
consensus : ACT-TATAA----GATGG-ATTTAC-TTG-T-CT-G-AAG-TT-GCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-C-TTTT--GT--AC-CCAATTTCCTTCACCCGT-TGT-TATA-AA---ACTATA-TATTA-TGAGATAT-AA-A---CTGCAA-GTTAA-AGGCTA-A-TAC-TTTTAACGTAT-TATTATA--TCATAGATTG-GT--GTAAATAGCAC-TAACAAAAA--A--TAAATTCGG--ATCTCGCTCTCCTTCAGTAGAT--ATAA-G-CGCGTAAAG--TTAAAAANT--CGC-TGATTTCTCA-GA--------AAATT----TCTGATGATAAA-A-C--GGTCGTTGTACA-TT------T-AATATC-CACTTTC-AACA-CT----CAA-ATTTT-G-T-TA-GAA--CAAAGC-ACG-A-TTAT-TGNTG-AAATGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-GAATAT-TATG-TACC-CATCCCAAAACG-GC-G----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGC
Reference ( family-3019 ) : ACT-TATAA----GATGG-ATTTAC-TTG-T-CT-G-AAG-TT-GCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-C-TTTT--GT--AC-CCAATTTCCTTCACCCGT-TGT-TATA-AA---ACTATA-TATTA-TGAGATAT-AA-A---CTGCAA-GTTAA-AGGCTA-A-TAC-TTTTAACGTAT-TATTATA--TCATAGATTG-GT--GTAAATAGCAC-TAACAAAAA--A--TAAATTCGG--ATCTCGCTCTCCTTCAGTAGAT--ATAA-G-CGCGTAAAG--TTAAAAANT--CGC-TGATTTCTCA-GA--------AAATT----TCTGATGATAAA-A-C--GGTCGTTGTACA-TT------T-AATATC-CACTTTC-AACA-CT----CAA-ATTTT-G-T-TA-GAA--CAAAGC-ACG-A-TTAT-TGNTG-AAATGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-GAATAT-TATG-TACC-CATCCCAAAACG-GC-G----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGC
gi|1 : ACTGTATAT----GA--G-AATTACGTTGCT-CT-GGAAGATT-GCATATCGC-TTTCGTTTCCAACAATTCCGC-GTTCATTTGT-ATCCAAATTCCCTC-GGCTG-CT--GGTGATCTTT-CAGTTAAGGTC-CCCGCTG---GTTC-TTTG--GT--ACGCCAATT-CCTTCACCCGC-TGTGTATATAA---ACGACACTATAC-TGAGAAAT-AA-GAATCTGCAATGTTAACAGGCTA-AATAC-TCTTAACGTAT-TTATATA--TCATAGATTG-TTA-GTAAATAA-AA-TAAC--AAA--A--TAAATTCGG--ATCT-ACTCTCCTTCAGT-GATTAATAA-GTCACGTAAAGGTTTAAAAATT--CGG-CGATTTTTTA-GATTTCTCCGGAATTCTGATCTGATGATAAACA-CGTGGTCGTCGTACA-TC------C--ATATCTCACTTTC-AACA-CTTCAATAA-ATTTT-G-C-TACGAA--CAAAGC-ACG-A--TATATGATG-AAATGATAT-GTTCAGATTCA--TTCTG-TCTGT-AAC----ATCTCGC-ATA-GATCGCCGAG-AGTGGAATATCCGTA-TACCGCATTCT--AACGTGC-GGTTAT--TT-GA-A--TCTTTGACCCACCGGTTCTT-T-GTATCCGTGACCCGTCTTC-TTAGTATCACGAA-ACCCG
gi|10 : ttACT-TATAA----TATGGGATTTAC-TTG-T-CT-G-AAG-TT-GCATATAGT-TTTCGTTTCCAA--ATTCCGC-GTTC-TTTGT--------T-CCC--------------------TTT-CAGTTAAGATAACCCGC-A---GT-C-TTTT--GT--AC-CGAATTTCCTTCACCTGT-TGT-
gi|11 : ttATGAT-T-GATCA-ATTTA-TTTTTG-T-TGTGCAC----A--GTGC-ATACAATCGCCAAG-AGG-TAATAT-TATG-TACT-TATCACAAAACG-GC-GT---T--TT-AA-A--TCTCTGAC---TCCGTTCCT-T-
gi|12 : TCGC--ATGCCGCTCTCCTTCTGTAGAT--GTAG-G-CTTGTAAA---TTGGAGA-------------TCTCA-GA--------AAA-A----AATGATAATAAA-G-C--GA-CGGTGTTTA-TTGAATGCT-AGTATT-CACTag
gi|13 : -TTCT--GT-----CCAAACTTTTTCATCCGT-TGT-TATA-AA---ATTTTG-AATTA-TGAAATAA-AA-A---CTGCAA-GTCAA-ACGTTA-A-TA--TTCTAAT---T-TATTATA--T-ATAG
gi|14 : t-TT------A-AAAATT-CACTTTC-AACA-CT----CAA-ATTTTTG-T-TA-GAA--CGAAGC-AC---------TGTT-------AT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--gcgg
gi|15 : atataagcgggtaaagTTACCCGC-TTATAT-C-TACT--GT--AC-CCAATTTCCTTCACCTGT-TGT-TATA-AT---ACTATA-AATTA-TGAGATAT-AA-A---CTGCAA-
gi|16 : taactTTCTG-T-TGTAAAC----A--TCGC-ATACGATCGCCGAG-ATT-GAATGT-TAT
gi|18 : TGTCT--GACCTG-GTTT-TTTGTATC-CGAATACTCGGC
gi|2 : ACT-TATAA----GATG--ATTTACCTTG-T-CTTG-AAG-TT-GCATATCGC-TT-CGTT-CCAA--ATTCCGC-GTTC-TTTGTTATCCAAAT-CC-GC-G-TTC-TTTTGGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-C-TTTTTTGTGGAC-CCAATTTCCTTCACCCGTATGT-TATA-AA---ACTATA-TATTACTGAGATGTTAACA---CTGCAA-GTTAA-AGGCT--A-TAC---TTAAC-TCG-TATTATA--TCATAGATTG-GT--GCAAATAA-ACTTAACAAAAA--ATTTAAATTCGGGAATCTCACTCTCCTTCAGTAGAT--ATAA-G-CACGT-AAG--TTAAAAATT--CGC-TGATTTCTCC-G---------AAATT----TCTGATGATAAA-A-C--GGTCG-TGTACA-TT------T-AATATC-CACTTTCAAACA-CT----CAA-ATTTT-GTT-TA-GAAACCAAAGC-AC--A-TTAT-TGATGAAAATGAT-T-G-TCA-ATTCATTTTCTG---TGAAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-GAATA---ATA-TACC-CAT-CCAAAACG-GC-G----TTGTT-GA-A--TCTTTGAC---CC-GTTCTTCT-G-ATCC--GGCCCG-GTTC-ATAGTATC-CG-ATACCCGatg
gi|20 : t-GTTT-TTTGTATC-CGAATACCCGGCcg
gi|21 : CG-GTTT-TTTGTATC-CGAATACCCGGCgtgtg
gi|3 : ACT-TATAA----GATGG-ATTTAC-TTG---CT-G-AAG-TTTGCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTG--ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTTTCAGTTAAGGT-ACCCGC-G---GT-C-TTTT--GT--AC-CCAATTTCCTTCACCCGT-TGC-TATA-AA---ACTATA-TATTA-TGAGATAT-AA-A---C-GCAA-GTTAA-AGGCTA-A-TAC-TTTTAACGTAT-TATTATA--TCATAGATTG-GTTTGTAA-TAACAG-TAACAAAAA--A--TAAAT-CGG--ATCTCACTCTCCTTCAGTAGAT--ATAAAG-CACGTAAAG--TTAAAAATT--CGCCTGATTTCGAC-GA--------AAATT----TCTGATGATAAA-A-C--GGTCGTTGTACAATT------TGAATATC-CACTTCC-AACA-CTT---CAA-AGTTT-G-TGTA-GAA--CAAAGCCACG-A-TTAT-T--TG-AAATGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGTAAAATAT-TATA-TACC-CA-CCCAAAACG-GC-G----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGCgt
gi|4 : ACT-TATAA----GATGGCATTTAC-TTG-TTCT-G-AAG-TT-GCATATCGCCTT-CGTTTCCAA--ATTCCGCCGTTC-TTTGTTATCCAAAT-CCCGCCG-TTCCTT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-CTTTTT--GT--AC-CCAATTTCC--CACC--T-TGT-TATA-AAATTACTATA-TATTA-TGAGATGT-AA-A---CTGCAA-GTTAA-AGGCTA-A-TAC--TTTAACGTAT-TATAATGATTCATAGATTGCGT--GCAAATAA-AC-TAACAAAAA--A---AAATTCGG--ATCTCACTCTCCTTCAGTAGAT--ATAA-GCCACGTAAAG--TTAAAAAATTGCGC-TGATTTCTCC-CG--------AAATT----TCTGATGATAAA-A-C--GGTCG-TGTACA-TT------T-AATATC-CACTTTC-AACACCT----CAA-A-ATT-G-T-TT-AAA--CAAAGC-ACGCATTTAT-TGATG-AAAGCAT-TCGTTCA-ATTCA-TTTCTGTT-TGTAAAC----AT-TCGC-ATAGGATCGCCGAGCAGT-GAATAT-TATATTACC-CATCCCAAAACG-GC-GT---T--TT-GACA--TCTTTGAC---CCGGTTCTT-T-GTATCC--GGCCC
gi|5 : tt-CC-G-AAA-AT-GCATATCGC-TT-CGTTTCCAA--ATTC-GC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G----T-C-TTTT--GT--AC-CCAATTTCCTTCACTCGT-TGT-TA-A-AA---ACTATA-TATTA-TGAGATAT-AA-A---CTGCAA-GTTAA-AGGCTA-A-T---CTTTAACGTATCTAT-ATA--T-ATAGATTG-GT--GTAAAT-GCAC-TAACAAAAATAA--TAAATTCGG--ATCTCGCTCTCCTTCGGTAGAT--ATAA-G-CGGGTAAAG--TTGAAAAAT--CGT-TGATTTTTCAAGA--------AAATT----TCTGATAATAAA-AAC--GGTCGTGGTATT-TC------T-AATATC-CACTTTC-AACA-CT----CAA-ATTTT-G-T-TA-GAG--CAAAGC-ACG-A-TTAT-TGTTG--AATGAT-T-GTTTA-ATTCA-TTTCT--T-TATAAAC----A--TCGCTCTAGAATAGCTGAG-AAT-GAATAT-TATG-TACC-CATCCCAAAACG-GC-G----T--TT-TA-AATTCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTT-TTTGTATC-CGAATACCCGGC
gi|6 : AGATTT-AA-----CTGCAA-TTTAA-AGGCTA-A-TA--TTTTAACGTAT-TAT-GTA--TTACAGATTG-GT--GTATAT-GCAC-TTACAAAAA-----TAAATTCGG--ATCTTGCTCTCCTTCAGTAGAA--ATAA-G-CGGGTAAAG--TTGAAAAAT--CGT-TGATTTTTAA-GA--------AA-TT----TCTGATAATCAA-A-C--GGT-GGTGTACA-TT------T-AATATT-CACTTTC-AACA-CT----CAAGATTTT-G-A-AA-GAG--CAAAGC-ACG-A-TTAT-TGCTG-AAATGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--TCGC-TTAGAATGGCTGAG-ATT-GAGTAT-TATG-TACC-CATCCCAAAACG-GCTT----T--TT-AA-A--TCTTTGAC---CCGGTTCTT-T-GTATCA--GACCCA-TTTT-TTTATATC-TGAATACCCGGgt
gi|7 : TAA-AGGCTA-A-TGT-TTT--ATGTAT-TAT-ATA--TCATAGGTTG-G---GTACCT-GCAG-TAACAAAAA-----TAAATTCAG--TTCTCGCTCTCCTTCAGTAGAT--ATAA-G-CAGGTCAAG--TTAAAAAATT-CGC-TGATTTCTCA-GA--------AA--T----TCTGCTG-TAAA---C--GGTCGT-GTACA-TT------C-AATATCACACTTTC-AACA-CT----CAA-ATTTT-G-T-TA-GAA--CAAAGC-ACG-A-TTAT-TGCTG-AAATGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-AAATAT-TATG-TACC-CATCCCAAATTG-GC-A----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-TAGTATCC---ACCC--GTTCATTAGTATC-GAAATACCCG
gi|8 : CT-TATAATTCGGATT--ATTTCC-CTA-T-CT-G-AAG-TT-GCTTATCAC-TT-TGTT------------------C-TGTGT-ATCCAAAT-TCCGC-G-TTC-TT--AGT-ATCCTT-CACTTTAGGTAACCCGC-G---GT-C-CTAT--TT---C-CCAATTTCCTTCACTC-----C-TATA-AA-----T------TTA-TGATATGT----------------------GGCTATA-TATATTTAAATGTAC-TA-TATA--TCATAGTTTG-AT--GGAAATA
gi|9 : cgTCA-ATTCA-TTTCTG-C-CGTGAACTTGCA--T-GC-ACACTATCGCTGAG-AGT-GAGTAT-CATG-TA----------AAACA-GT-G----T--TTTAA-A--TGCTCAAC---CTGGTTCTT-T-GTGTCT--GGCCCA-GTTC-TTTGTATC-TGAATACCCAGCa
blockSeqs : . TTCG GG C TT T . . T C T T . C . T . C . C TT . T A TTAT . T TT GGA . A . . ATT A C T CA . . T . TAT G C T AT C C TT AAC CT ATT GA . A C TT . T TG CC A . AT . AA . GT A GAATGCT A A C T G T TT . AC C GC TT . T AA . C . T TT TTGC T T C C A . T . . T T TG T C AT . C A . . A .
blockSeqs : . . GC . T . . . . . . T . . . T . . . . . . . T A . . . A . . . . . A . . A . . . . CT G . T . C . . AA G TAA . . . . AC . T T C . . AT . G . TT . TG . . . . . . TG . . . G T . A A . . . . T . . . C . . . . . . . T . . . . . . . . . . .
blockSeqs : . . G . T . . . . . . T . . . . . . . . . . . T G . . . A . . . . . T . . A . . . . TT G . T . C . . AA C A . . . . AC . A . C . . AT . A . TG . A . . . . . . T . . . G T . A A . . . . T . . . G . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T . . . . . . T . . . . . . . . . . . T G . . . A . . . . . T . . A . . . . T G . A . T . . GC C A . . . . AC . A . T . . AT . A . GT . T . . . . . . T . . . G T . T A . . . . T . . . G . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . T G . . . A . . . . . T . . A . . . . C G . T . C . . GC C . . . . . GG . A . T . . A . A . T . T . . . . . . T . . . G T . C A . . . . T . . . G . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . A G . . . A . . . . . T . . A . . . . C G . . . C . . GC G . . . . . GG . A . C . . T . A . T . T . . . . . . A . . . . T . C . . . . . T . . . G . . . . . . . . . . . . . . . . . . .
blockSeqs : . G . . . . . . . . . . . . . . . . . C . . . . . . . . . . . AG . . . . . . . . . . T . T . . . . . . T . . . . . . . . . . . . T . . . G . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . T . . . . . . C . . . . . T . . . G . . . . . . . . . . . . . . . . . . .
blockSeqs : . . C . . . C . . . . . .
blockSeqs : . . .
blockSeqCons : G* T** ** G**** T* A**** C** ** A**** ** ** ******** **** A** ** **** T* T** ** **** *** **
originalCons : ACT-TATAA----GATGG-ATTTAC-TTG-T-CT-G-AAG-TT-GCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-C-TTTT--GT--AC-CCAATTTCCTTCACCCGT-TGT-TATA-AA---ACTATA-TATTA-TGAGATAT-AA-A---CTGCAA-GTTAA-AGGCTA-A-TAC-TTTTAACGTAT-TATTATA--TCATAGATTG-GT--GTAAATAGCAC-TAACAAAAA--A--TAAATTCGG--ATCTCGCTCTCCTTCAGTAGAT--ATAA-G-CGCGTAAAG--TTAAAAANT--CGC-TGATTTCTCA-GA--------AAATT----TCTGATGATAAA-A-C--GGTCGTTGTACA-TT------T-AATATC-CACTTTC-AACA-CT----CAA-ATTTT-G-T-TA-GAA--CAAAGC-ACG-A-TTAT-TGNTG-AAATGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-GAATAT-TATG-TACC-CATCCCAAAACG-GC-G----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGC
finalCons : ACT-TATAA----GATGG-ATTTAC-TTGT--CT-G-AAG-TT-GCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTACCCGCG----GT-C-TTTT--GT--AC-CCAATTTCCTTCACCCGT-TGT-TATA-AA---ACTATAT-ATTA-TGAGATAT-AAA----CTGCAA-GTTAA-AGGCTA-A-TAC--TTTAACGTAT-TATTATA--TCATAGATTG-GT--GTAAATAGCAC-TAACAAAAAA----TAAATTCGG--ATCTCGCTCTCCTTCAGTAGAT--ATAA-G-CGCGTAAAG--TTAAAAANT--CGC-TGATTTCTCA-GA--------AAATT----TCTGATGATAAAA--C--GGTCGTTGTACA-TT------T-AATATC-CACTTTC-AACA-CT----CAA-ATTTT-G-T-TA-GAA--CAAAGC-ACG-AT-TAT-TGNTG-AAATGAT-T-GTTCA-ATTCA-TTTCTGT--TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-GAATAT-TATG-TACC-CATCCCAAAACG-GC-G----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GATGCAGAGCTCTACGTAGTTGTGACGCACTTTTTCATTGTGAC
Unaligned ( gi|19 ): GGCTGTGTGTGGTAATATTTATTGAAAACTTTTA
Alignments
lowQualScore : 1111 22 1 111 1 1 11111 1 11 111 222222 1 11 11111111 1111 11 11111111 1111 1111
lowQualScore : 6 4444 00 3 111 5 5 5 5 5 1 5 77 0 5 5 1 5 0 5 5 5 77 5 5 5 88888 5 4 66 888 4 4 4 5 888 0 55 5 4 33333 4 4 88888 4 4 1 4 0 66 2 5 11 0 666 4 5 222222 66 66 5 0 44 0 66 5 11 55 5 88888888 33 0000 999 66 11 4 44444444 8 5 5 5 0000 5 55 666 5 66 5 77 55 5 2 55 4 4 4 4 444 7777 88 4 2 4 8 4 4 4 0 4 4 8888 66 4 4 66 777 4 4 66 4 4 4
lowQualScore : . .... .. . ... . . . . . . . .. . . . . . . . . . .. . . . ..... . . .. ... . . . . ... . .. . . ..... . . ..... . . . . . .. . . .. . ... . . ...... .. .. . . .. . .. . .. .. . ........ .. .... ... .. .. . ........ . . . . .... . .. ... . .. . .. .. . . .. . . . . ... .... .. . . . . . . . . . . .... .. . . .. ... . . .. . . .
lowQualScore : 7 2222 00 3 555 7 7 7 7 7 4 0 99 7 7 7 4 7 7 7 7 7 99 7 7 5 99999 0 4 11 000 4 4 4 0 888 4 55 0 4 00000 4 4 77777 4 4 1 4 2 11 9 0 99 1 444 3 7 111111 99 99 0 0 55 1 99 9 99 22 0 11111111 44 6666 000 99 22 4 44444444 9 0 0 0 6666 0 11 111 0 99 0 55 11 0 8 11 4 4 0 0 111 7777 66 0 5 0 0 0 4 4 1 4 4 3333 11 4 4 11 888 4 4 11 0 0 0
consensus : ACT-TATAA----GATGG-ATTTAC-TTG-T-CT-G-AAG-TT-GCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-C-TTTT--GT--AC-CCAATTTCCTTCACCCGT-TGT-TATA-AA---ACTATA-TATTA-TGAGATAT-AA-A---CTGCAA-GTTAA-AGGCTA---A-TACT-TT-AACGTAT-TATTATA--TCATAGATTG-GT--GTAAATAGCACT-AACAAAAA--AT--AAATTCGG--ATCTCGCTCTCCTTCAGTAGAT--ATAA-G-CGCGTAAAG--TTAAAAANT--CGC-TGATTTCTCA-GA--------AAATT----TCTGATGATAAA-A-CG--GTCGTTGTACA-TT------T-AATATC-CACTTTC-AACA-CT-C----AA-A-TTTTG-T-TA-GAA--CAAAGC-ACG-A-TTAT-TGNTG-AAATGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-GAATAT-TATG-TACC-CATCCCAAAACG-GC-G----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGC
Reference ( family-3019 ) : ACT-TATAA----GATGG-ATTTAC-TTG-T-CT-G-AAG-TT-GCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-C-TTTT--GT--AC-CCAATTTCCTTCACCCGT-TGT-TATA-AA---ACTATA-TATTA-TGAGATAT-AA-A---CTGCAA-GTTAA-AGGCTA---A-TACT-TT-AACGTAT-TATTATA--TCATAGATTG-GT--GTAAATAGCACT-AACAAAAA--AT--AAATTCGG--ATCTCGCTCTCCTTCAGTAGAT--ATAA-G-CGCGTAAAG--TTAAAAANT--CGC-TGATTTCTCA-GA--------AAATT----TCTGATGATAAA-A-CG--GTCGTTGTACA-TT------T-AATATC-CACTTTC-AACA-CT-C----AA-A-TTTTG-T-TA-GAA--CAAAGC-ACG-A-TTAT-TGNTG-AAATGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-GAATAT-TATG-TACC-CATCCCAAAACG-GC-G----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGC
gi|1 : ACTGTATAT----GA--G-AATTACGTTGCT-CT-GGAAGATT-GCATATCGC-TTTCGTTTCCAACAATTCCGC-GTTCATTTGT-ATCCAAATTCCCTC-GGCTG-CT--GGTGATCTTT-CAGTTAAGGTC-CCCGCTG---GTTC-TTTG--GT--ACGCCAATT-CCTTCACCCGC-TGTGTATATAA---ACGACACTATAC-TGAGAAAT-AA-GAATCTGCAATGTTAACAGGCTA---AATACTCTT-AACGTAT-TTATATA--TCATAGATTG-TTA-GTAAATAAAA-T-AACAAAA----T--AAATTCGG--ATCT-ACTCTCCTTCAGT-GATTAATAA-GTCACGTAAAGGTTTAAAAATT--CGG-CGATTTTTTA-GATTTCTCCGGAATTCTGATCTGATGATAAACA-CGTGGTCGTCGTACA-TC------C-A-TATCTCACTTTC-AACA-CT-TCAATAA-A-TTTTG-C-TACGAA--CAAAGC-ACG-A--TATATGATG-AAATGATAT-GTTCAGATTCA--TTCTG-TCTGT-AAC----ATCTCGC-ATA-GATCGCCGAG-AGTGGAATATCCGTA-TACCGCATTCT--AACGTGC-GGTTAT--TT-GA-A--TCTTTGACCCACCGGTTCTT-T-GTATCCGTGACCCGTCTTC-TTAGTATCACGAA-ACCCG
gi|10 : ttACT-TATAA----TATGGGATTTAC-TTG-T-CT-G-AAG-TT-GCATATAGT-TTTCGTTTCCAA--ATTCCGC-GTTC-TTTGT--------T-CCC--------------------TTT-CAGTTAAGATAACCCGC-A---GT-C-TTTT--GT--AC-CGAATTTCCTTCACCTGT-TGT-
gi|11 : ttATGAT-T-GATCA-ATTTA-TTTTTG-T-TGTGCAC----A--GTGC-ATACAATCGCCAAG-AGG-TAATAT-TATG-TACT-TATCACAAAACG-GC-GT---T--TT-AA-A--TCTCTGAC---TCCGTTCCT-T-
gi|12 : TCGC--ATGCCGCTCTCCTTCTGTAGAT--GTAG-G-CTTGTAAA---TTGGAGA-------------TCTCA-GA--------AAA-A----AATGATAATAAA-G-CG--A-CGGTGTTTA-TTGAATGCT-AGTATT-CACTag
gi|13 : -TTCT--GT-----CCAAACTTTTTCATCCGT-TGT-TATA-AA---ATTTTG-AATTA-TGAAATAA-AA-A---CTGCAA-GTCAA-ACGTTA---A-TATT-CT-AAT---T-TATTATA--T-ATAG
gi|14 : t-TT------A-AAAATT-CACTTTC-AACA-CT-C----AA-ATTTTTG-T-TA-GAA--CGAAGC-AC---------TGTT-------AT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--gcgg
gi|15 : atataagcgggtaaagTTACCCGC-TTATAT-C-TACT--GT--AC-CCAATTTCCTTCACCTGT-TGT-TATA-AT---ACTATA-AATTA-TGAGATAT-AA-A---CTGCAA-
gi|16 : taactTTCTG-T-TGTAAAC----A--TCGC-ATACGATCGCCGAG-ATT-GAATGT-TAT
gi|18 : TGTCT--GACCTG-GTTT-TTTGTATC-CGAATACTCGGC
gi|2 : ACT-TATAA----GATG--ATTTACCTTG-T-CTTG-AAG-TT-GCATATCGC-TT-CGTT-CCAA--ATTCCGC-GTTC-TTTGTTATCCAAAT-CC-GC-G-TTC-TTTTGGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-C-TTTTTTGTGGAC-CCAATTTCCTTCACCCGTATGT-TATA-AA---ACTATA-TATTACTGAGATGTTAACA---CTGCAA-GTTAA-AGGCTA-----TACT-T--AAC-TCG-TATTATA--TCATAGATTG-GT--GCAAATAA-ACTTAACAAAAA--ATTTAAATTCGGGAATCTCACTCTCCTTCAGTAGAT--ATAA-G-CACGT-AAG--TTAAAAATT--CGC-TGATTTCTCC-G---------AAATT----TCTGATGATAAA-A-CG--GTCG-TGTACA-TT------T-AATATC-CACTTTCAAACA-CT-C----AA-A-TTTTGTT-TA-GAAACCAAAGC-AC--A-TTAT-TGATGAAAATGAT-T-G-TCA-ATTCATTTTCTG---TGAAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-GAATA---ATA-TACC-CAT-CCAAAACG-GC-G----TTGTT-GA-A--TCTTTGAC---CC-GTTCTTCT-G-ATCC--GGCCCG-GTTC-ATAGTATC-CG-ATACCCGatg
gi|20 : t-GTTT-TTTGTATC-CGAATACCCGGCcg
gi|21 : CG-GTTT-TTTGTATC-CGAATACCCGGCgtgtg
gi|3 : ACT-TATAA----GATGG-ATTTAC-TTG---CT-G-AAG-TTTGCATATCGC-TT-CGTTTCCAA--ATTCCGC-GTTC-TTTG--ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTTTCAGTTAAGGT-ACCCGC-G---GT-C-TTTT--GT--AC-CCAATTTCCTTCACCCGT-TGC-TATA-AA---ACTATA-TATTA-TGAGATAT-AA-A---C-GCAA-GTTAA-AGGCTA---A-TACT-TTTAACGTAT-TATTATA--TCATAGATTG-GTTTGTAA-TAACAGT-AACAAAAA--AT--AAAT-CGG--ATCTCACTCTCCTTCAGTAGAT--ATAAAG-CACGTAAAG--TTAAAAATT--CGCCTGATTTCGAC-GA--------AAATT----TCTGATGATAAA-A-CG--GTCGTTGTACAATT------TGAATATC-CACTTCC-AACA-CTTC----AA-A-GTTTG-TGTA-GAA--CAAAGCCACG-A-TTAT-T--TG-AAATGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGTAAAATAT-TATA-TACC-CA-CCCAAAACG-GC-G----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTC-TTTGTATC-CGAATACCCGGCgt
gi|4 : ACT-TATAA----GATGGCATTTAC-TTG-TTCT-G-AAG-TT-GCATATCGCCTT-CGTTTCCAA--ATTCCGCCGTTC-TTTGTTATCCAAAT-CCCGCCG-TTCCTT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G---GT-CTTTTT--GT--AC-CCAATTTCC--CACC--T-TGT-TATA-AAATTACTATA-TATTA-TGAGATGT-AA-A---CTGCAA-GTTAA-AGGCTA---A-TACT-TT-AACGTAT-TATAATGATTCATAGATTGCGT--GCAAATAA-ACT-AACAAAAA--A---AAATTCGG--ATCTCACTCTCCTTCAGTAGAT--ATAA-GCCACGTAAAG--TTAAAAAATTGCGC-TGATTTCTCC-CG--------AAATT----TCTGATGATAAA-A-CG--GTCG-TGTACA-TT------T-AATATC-CACTTTC-AACACCT-C----AA-A--ATTG-T-TT-AAA--CAAAGC-ACGCATTTAT-TGATG-AAAGCAT-TCGTTCA-ATTCA-TTTCTGTT-TGTAAAC----AT-TCGC-ATAGGATCGCCGAGCAGT-GAATAT-TATATTACC-CATCCCAAAACG-GC-GT---T--TT-GACA--TCTTTGAC---CCGGTTCTT-T-GTATCC--GGCCC
gi|5 : tt-CC-G-AAA-AT-GCATATCGC-TT-CGTTTCCAA--ATTC-GC-GTTC-TTTGT-ATCCAAAT-CCCGC-G-TTC-TT--GGT-ATCTTT-CAGTTAAGGTTACCCGC-G----T-C-TTTT--GT--AC-CCAATTTCCTTCACTCGT-TGT-TA-A-AA---ACTATA-TATTA-TGAGATAT-AA-A---CTGCAA-GTTAA-AGGCTA---A-T-CT-TT-AACGTATCTAT-ATA--T-ATAGATTG-GT--GTAAAT-GCACT-AACAAAAATAAT--AAATTCGG--ATCTCGCTCTCCTTCGGTAGAT--ATAA-G-CGGGTAAAG--TTGAAAAAT--CGT-TGATTTTTCAAGA--------AAATT----TCTGATAATAAA-AACG--GTCGTGGTATT-TC------T-AATATC-CACTTTC-AACA-CT-C----AA-A-TTTTG-T-TA-GAG--CAAAGC-ACG-A-TTAT-TGTTG--AATGAT-T-GTTTA-ATTCA-TTTCT--T-TATAAAC----A--TCGCTCTAGAATAGCTGAG-AAT-GAATAT-TATG-TACC-CATCCCAAAACG-GC-G----T--TT-TA-AATTCTTTGAC---CCGGTTCTT-T-GTATCC--GACCCG-GTTT-TTTGTATC-CGAATACCCGGC
gi|6 : AGATTT-AA-----CTGCAA-TTTAA-AGGCTA---A-TATT-TT-AACGTAT-TAT-GTA--TTACAGATTG-GT--GTATAT-GCACT-TACAAAAA---T--AAATTCGG--ATCTTGCTCTCCTTCAGTAGAA--ATAA-G-CGGGTAAAG--TTGAAAAAT--CGT-TGATTTTTAA-GA--------AA-TT----TCTGATAATCAA-A-CG--GT-GGTGTACA-TT------T-AATATT-CACTTTC-AACA-CT-C----AAGA-TTTTG-A-AA-GAG--CAAAGC-ACG-A-TTAT-TGCTG-AAATGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--TCGC-TTAGAATGGCTGAG-ATT-GAGTAT-TATG-TACC-CATCCCAAAACG-GCTT----T--TT-AA-A--TCTTTGAC---CCGGTTCTT-T-GTATCA--GACCCA-TTTT-TTTATATC-TGAATACCCGGgt
gi|7 : TAA-AGGCTA---A-TGTT-TT-A-TGTAT-TAT-ATA--TCATAGGTTG-G---GTACCT-GCAGT-AACAAAAA---T--AAATTCAG--TTCTCGCTCTCCTTCAGTAGAT--ATAA-G-CAGGTCAAG--TTAAAAAATT-CGC-TGATTTCTCA-GA--------AA--T----TCTGCTG-TAAA---CG--GTCGT-GTACA-TT------C-AATATCACACTTTC-AACA-CT-C----AA-A-TTTTG-T-TA-GAA--CAAAGC-ACG-A-TTAT-TGCTG-AAATGAT-T-GTTCA-ATTCA-TTTCTG-T-TGTAAAC----A--TCGC-ATAGGATCGCCGAG-AGT-AAATAT-TATG-TACC-CATCCCAAATTG-GC-A----T--TT-GA-A--TCTTTGAC---CCGGTTCTT-TAGTATCC---ACCC--GTTCATTAGTATC-GAAATACCCG
gi|8 : CT-TATAATTCGGATT--ATTTCC-CTA-T-CT-G-AAG-TT-GCTTATCAC-TT-TGTT------------------C-TGTGT-ATCCAAAT-TCCGC-G-TTC-TT--AGT-ATCCTT-CACTTTAGGTAACCCGC-G---GT-C-CTAT--TT---C-CCAATTTCCTTCACTC-----C-TATA-AA-----T------TTA-TGATATGT----------------------GGCTATATA-TATT-TA-AATGTAC-TA-TATA--TCATAGTTTG-AT--GGAAATA
gi|9 : cgTCA-ATTCA-TTTCTG-C-CGTGAACTTGCA--T-GC-ACACTATCGCTGAG-AGT-GAGTAT-CATG-TA----------AAACA-GT-G----T--TTTAA-A--TGCTCAAC---CTGGTTCTT-T-GTGTCT--GGCCCA-GTTC-TTTGTATC-TGAATACCCAGCa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GATGCAGAGCTCTACGTAGTTGTGACGCACTTTTTCATTGTGAC
Unaligned ( gi|19 ): GGCTGTGTGTGGTAATATTTATTGAAAACTTTTA