lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 2 11 3 2 11 222 33333333 11 5555555555 22 2 1 1 11111 99999999999999999999999999999999999999999999999 11 22222 2222 11 222 1 2 22222 11111 1 1 1 1 1 1 1 2 1 2222 444444444 1 111 1 8888888888888888888888888888888888888888888888888 22 222 22222222
lowQualScore : 6 7 00 1 4 2 1 0 4 3 33 333 6 11111111 0 88 7 1111111111 6 1 44 3 3 3 4 999999 00000 77777777777777777777777777777777777777777777777 33 33333 0 2222 11 0 444 5 3 1 4 8 8 99 00000 99999 1 5 88 6 2 2 9 1 2 3 0 5 0 0 2 0 0 0 8888 000000000 6 0 666 8 8 4 8 0 1 4444444444444444444444444444444444444444444444444 0 8 77 333 6 5 66666666
lowQualScore : . . .. . . . . . . . .. ... . ........ . .. . .......... . . .. . . . . ...... ..... ............................................... .. ..... . .... .. . ... . . . . . . .. ..... ..... . . .. . . . . . . . . . . . . . . . .... ......... . . ... . . . . . . ................................................. . . .. ... . . ........
lowQualScore : 5 8 88 2 6 0 0 8 0 2 88 333 7 33333333 7 33 3 7777777777 7 0 00 3 3 3 7 333333 22222 00000000000000000000000000000000000000000000000 88 00000 8 2222 00 8 444 0 2 0 0 0 0 00 00000 55555 4 0 11 7 3 2 0 0 2 2 6 0 8 6 2 0 0 5 0000 000000000 2 2 888 0 0 6 0 5 0 1111111111111111111111111111111111111111111111111 8 0 77 888 2 0 66666666
consensus : CCAATTTCA-ACAGCAATGGAACGCCGATGTTCATACTTCTCCAAAAGGTATATGTTATCGTTTATATAA---AGATGAATTTGTCTTTGAAA-TTAT-A-TTTAGACA--TTTCAAATGACAGAATGGG--AC-CTTATNTAGATTTAGAACTGGAAATCACAAGCT-TCCA-ATAG-AA-CTGGTAGATGNGCATCGATAGACAGAAGCAATAGAGAAAT-GTGATA----TCTGATAATAC---T-ATTNATGATTGAGTTTCATTAT-ACTATG--AATGTCCTTGGAAATGAATAN---TGTACG--AAAGCAATG-CTTGAAAAGTTACTTTTTTGAACAA-TATT-AATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAAACTTTAAGAAGTTTGTGTTCGTTAATTTAGAAGTATAAAATCAAAGAATTTGTCCT-CCGACATAACCA-NN-TGTGAT---------AATAATCTGTTGATTTACCAC-TATTT-GTAAC-ATCCTGTATAA-TGATGAAAACCTTTTTCCTTGTCATATTACCTTGTCA----------------TA-A-----TTA------------T-------GTGTATTTACATGCAT-TCTCTGTA-ACCATTTATTTGGTTTATGAGAAATAAA-TGA-----ACTTGAACTTGA
Reference ( gi|1 ) : CCAATTTCATACAGCAATGGGACACTGACGTTCA-ACTTCTCCAAAAGGTAT-TGTTATCATTTATATAA---AGCTGAATTTGTCTTTGAAA-TTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATGTAGATTTAGAACTAGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAAT-GTGATA----TCTGATAATACAAATAATTGATGATTGAGTTTCATTAT-ATTATG--AATGTCCTTGAAAATGAATAC---TGTACG--AAAGCAATGATTTGAAAAGTTACTTTTTTGAG-AA-TATT-AATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAATCTTTATGAAGCTTTTGTTCGTTAATTTAGACGTATAAAATTAAAGAATTTGTCCT-C-GACAAAACCA-AT-TGTAAT---------AATAATCTGTTGATTTTCCAC-TATTT-GTAAC-ATCCTGCATAA-TGATGAAAACCTTTTTCCTTGTCATTTTACCTTATC-----------------TA-A-----TTA------------T-------GTGTATTTACATGCAT-TA-CTGTA-ACCATTCATTTGGTTTATGAGAAATAAA-TGA-----AC-TGAACTTGA
gi|2 : CCAATTT-ATACAGCAATGGGACACTGACGTTCA-ACTTCTCCAAAAGGTATATGTTATCA-TTATATAA---AGCTGAATTTGTCTTTGAAA-TTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATGTAGATTTAGAACTAGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAAT-GTGATA----TCTGATAATACAAATAATTGATGATTGAGTTTCATTAT-ATTATG--AATGTCCTTGAAAATGAATAC---TGTACG--AAAGCAATGATTTGAAAAGTTACTTTTTTGAG-AA-TATT-AATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAATCTTTATGAAGCTTTTGTTCGTTAATTTAGACGTATAAAATTAAAGAATTTGTCCT-C-GACAAAACCA-AT-TGTAAT---------AATAATCTGTTGATTTTCCAC-TATTT-GTAAC-ATCCTGCATAA-TGATGAAAACCTTTTTCCTTGTCATTTTACCTTATC-----------------TA-A-----TTA------------T-------GTGTATTTACATGCAT-TA-CTGTA-ACCATTCATTTGGTTTATGAGAAATAAA-TGA-----AC-TGAACTTGA
gi|3 : CCAATTTCA-ACAGCAATAAAACGCTGATGTTCATACTTC-ACAAAAGGTATATGTTATCGTTTATATAA---AGATGAAGTTGTCTTTGAAAATTAT----TTCGACA--TTTTAAATGACAGAA------AC-TTTATCTAGATTTAGAACTGGAAATCACAAGCT-TCCA-ATGG-AATCTGGTAGATGTGCATTGATAGACAGAAGCAAT--AGAAATGGTGATGAGTTTCT--TTAT-------ATT----ATTGAATGTCCTGA--A--ATG--AAT---------AAT----------GTACG--AAAGCAAAG-CCTGAAAAGTTA-TTTTTTGAACAA-TGTT-AATGT-CATTAAATTAAAAAAAAAA-CCAACTACTCCAGTGT-AAA-----------TTTA-GAAA---------------TTAGAGGTAT-AAATCAAAGAATTTGTCCTCC-GACATAACCATATGTGCAATGTTAATGGCAATAATTTATTAATTT---AC-----T-GTAATGATTTTCAATGA-TGTTAGAGACCT
gi|5 : CAATTTTA-ACAGCAATGGAACTCCAAAGTTCATACGTCTCCAAACGGTAT-CGTT------TATATATTTTAGATGAATTTGTCTTTGAAA---ATCA-TTTACACACTTTTCAT-TGACCTAATAGG--------ATTTAGATTTAGAACTGGAAATCACAAGCT-TCCA-ATAGAAA-GTGGTATATGGGCAACGATAAACAGAA-----AGTG-----GTGAT----------TAGT-----T--TTCATTATCCA----CATTA-----ATGGAAATGTCCT--GAAATGAATATCAATGTACGAAAAAGCAATG-TTTGAAAACTTATTAATCTGAACAACTATT-AATGTTCAATTAATA-----TAAAA-
gi|11 : gtaatCAATTTCA-ACAGCAATGC-ACACTGATGTTCATACTTCTCCAAAAGATAT-aaaacaaaatactccgtggtaatgtcaaaacatgtata
gi|14 : tGATGTTCATACATTTCCAAAAGGTATATGTTATCGTTTGTATA
gi|4 : GAAAACT-GTGGTA----TTAAATATTAC---TTCTTAATGTGTGTGTTTTA--ATGACTATG--AATGTC-TTGAAA-TGAATAA---TGTCCG--AAAGCAATG-CTTAAAAAGTTACTTCTTGAAG-AA-TACT-AATATA-ATTAAATT-----TAAAAAC---CTTTTGCA-----AAA-GTGTCAAAACCTTAAGAAGTTTGTGTTCGTTAATT-AGAAGTATAAA-TCAAAGAATTTATCCT-CCGACATAACCA-TA-TGTGAT---------AATAATTTGTTGATCTACTACCTTTTT-GTAAC-ATCCTGTATAA-TGATGAAAACCCTTTTCCGTGTCATATTACCTTGTCA----------------TG-AACTTTTTATATCGTATGTATT-------GTGTATTTACATGCAT-TCTCTGT--ACCATTTATTTGGTTTATGAGAAATAAA-TTA-----ACTTGAACTTGAtaatg
gi|7 : ATGTCCT--GAAATGAATAA---TGTACG--AA-GCAA--GCTTGAAAA-TTA---TTTTGAACAA-TATGGAATG-GCATTAAATT-----TAAAA-T---AAATT-CAGTGTAAAA-GTGTCAAAACTTTTT--AGTTTGTGTTTCTTAA-TTAGAAGTATAAAA
gi|6 : TTTTCCAGTGC-AAAAGTGTCAAAACTTTAAGAAGTTTGTGTTTGTTAATT-AGA-GTATAAA-TCAAAGAATTTGTCCT-CCGACATAGCCA-TA-TGTGAT---------AATAATCTGTTGATTTACCAC-TATTTTGTAAC-ATCCTGTATAA-TGATGAATACCTTTTTCCTTGTCATATTACCTTGTCATGAGCTATTTTATTTTTATA-----TCA------------TATATATTGTGTATTTACATGCAT-TCTCTGT--ACCATTCATTTGGTTTATAAGAAATAAA-TGA-----ACTTGAACTc
gi|16 : -AAA-GTGTCAAAACTTTAAGAAGTTTGTGTTTGTTAAT
gi|13 : aTTT-GTAAC-ATCCTGTATAAATGATGAAAACCTTTTTCCTTGTCATATT
gi|9 : A------------T-------ATATTTTTACA-GCAT-TCTCTGTA--CCATT-ATTTGG-TTAAGAG-AATAAATTGAAACTTAT-TGGACTTG
gi|8 : TTTACATGTATGTT-CTCTATACCAATTATTTGGTCTATGAGAAATAAA-T----------TGAACTTGA
gi|10 : cctcctcgtaatattatttcatgaattactatgtattcatacatattgtttattag-CTGTA--CCATTTATTTGGTTTATGAGAAATAAA-TGA-----ACTTGAACTTGagctt
gi|12 : ttct-CTGTA---CATTTATTTGGTTTATGAGAAATAAA-TGA-----ACTTGAACTT
gi|15 : tcTGTA--CCATTTATTTGGTTTATGAGAAATAAG-TGA-----ACTTGAACTTGAtga
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 22222222 11 4444444 2 2 1 1 7777777777777777777 11 33 111 1 1 11111 111 1 11 333333333 000000000000000000000000000000000000000000000000000 22
lowQualScore : 8 0 4 2 0 7 0 0 777 3 99999999 33 3 33 5555555 1 0 0 0 0 1 2 3 0 0 0 1111111111111111111 3 5 0 9999 8 11 00 111 1 99 3 3 2 9 0 6 6 5 66666 6 444 2 5 5 1 4 0 0 1 7 9 7 0 1 22 11 222222222 1 3 8 1 6 6 0 6 99 333333333333333333333333333333333333333333333333333 99 77 5 00 4 66 9999 4
lowQualScore : . . . . . . . . ... . ........ .. . .. ....... . . . . . . . . . . . ................... . . . .... . .. .. ... . .. . . . . . . . . ..... . ... . . . . . . . . . . . . . .. .. ......... . . . . . . . . .. ................................................... .. .. . .. . .. .... .
lowQualScore : 0 8 6 8 3 3 6 8 555 0 55555555 88 2 55 5555555 0 0 0 0 0 0 5 2 8 6 8 2222222222222222222 8 6 8 2222 0 00 33 777 0 22 5 3 5 3 8 7 7 2 77777 7 000 5 7 7 9 0 7 4 4 3 7 3 0 4 00 00 000000000 4 2 0 0 7 7 3 7 22 444444444444444444444444444444444444444444444444444 22 99 0 11 4 11 7777 4
consensus : CCAATTTCA-ACAGCAATGGAACACTGACGTTCATACTTCTCCAAAAGGTATATGTTATCGTTTATATAA---AGNTGAATTTGTCTTTGAAATTAT-AAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATNTAGATTTAGAACTGGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAAT-NATTGATGATTGAGTTTCATTAT-ATTA-TG--AATGTCCT--GAAATGAAT---AATGTACG--AAAGCAATG-CTTGAAAAGTTACTTTTTTGAACAA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAAACTTTANGAAGTTTGTGTTCGTTAATTTAGANGTATAAAATCAAAGAATTTGTCCTCCGACATAACCATATGTG--AT---------AATAATCTGTTGATTTACCAC-TATTT-GTAAC-ATCCTGTATAA-TGATGAAAACCTTTTTCCTTGTCAT--ATTACCTTGT---CATA---A-CT-T-------TTA------------T------------GTGT--ATTTACATGCAT--TCTCTGTAACCATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTTGA
Reference ( family-3004 ) : CCAATTTCA-ACAGCAATGGAACGCCGATGTTCATACTTCTCCAAAAGGTATATGTTATCGTTTATATAA---AGATGAATTTGTCTTTGAAATTAT-A--TTTAGACA--TTTCAAATGACAGAATGGG--AC-CTTATNTAGATTTAGAACTGGAAATCACAAGCT-TCCA-ATAG-AA-CTGGTAGATGNGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATAC---T-A-TTNATGATTGAGTTTCATTAT-ACTA-TG--AATGTCCTTGGAAATGAAT---ANTGTACG--AAAGCAATG-CTTGAAAAGTTACTTTTTTGAACAA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAAACTTTAAGAAGTTTGTGTTCGTTAATTTAGAAGTATAAAATCAAAGAATTTGTCCTCCGACATAACCANNTGTG--AT---------AATAATCTGTTGATTTACCAC-TATTT-GTAAC-ATCCTGTATAA-TGATGAAAACCTTTTTCCTTGTCAT--ATTACCTTGT---CATA---A------------TTA------------T------------GTGT--ATTTACATGCAT--TCTCTGTAACCATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTTGA
gi|1 : CCAATTTCATACAGCAATGGGACACTGACGTTCA-ACTTCTCCAAAAGGTAT-TGTTATCATTTATATAA---AGCTGAATTTGTCTTTGAAATTAT-AAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATGTAGATTTAGAACTAGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAAT-AATTGATGATTGAGTTTCATTAT-ATTA-TG--AATGTCCTTGAAAATGAAT---ACTGTACG--AAAGCAATGATTTGAAAAGTTACTTTTTTGAG-AA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAATCTTTATGAAGCTTTTGTTCGTTAATTTAGACGTATAAAATTAAAGAATTTGTCCT-CGACAAAACCAATTGTA--AT---------AATAATCTGTTGATTTTCCAC-TATTT-GTAAC-ATCCTGCATAA-TGATGAAAACCTTTTTCCTTGTCAT--TTTACCTTAT---C-TA---A------------TTA------------T------------GTGT--ATTTACATGCAT--TA-CTGTAACCATTCATTTGGTTTATGAGAAATAAA-T--GAAC----TGAA-CTTGA
gi|10 : T--TCTCTGTA-CCATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTTG
gi|11 : CAATTTCA-ACAGCAATGCA-CACTGATGTTCATACTTCTCCAAAAGATAT
gi|12 : tCTGTA--CATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTT
gi|13 : tcTTT-GTAAC-ATCCTGTATAAATGATGAAAACCTTTTTCCTTGTCAT--ATTtga
gi|14 : GATGTTCATACATTTCCAAAAGGTATATGTTATCGTTTGTATA
gi|15 : TGTA-CCATTTATTTGGTTTATGAGAAATAAG-T--GAAC---TTGAA-CTTGAtaatg
gi|16 : -AAA-GTGTCAAAACTTTAAGAAGTTTGTGTTTGTTAAT
gi|2 : aCCAATTTAT-ACAGCAATGGGACACTGACGTTCA-ACTTCTCCAAAAGGTATATGTTATCATT-ATATAA---AGCTGAATTTGTCTTTGAAATTAT-AAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATGTAGATTTAGAACTAGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAAT-AATTGATGATTGAGTTTCATTAT-ATTA-TG--AATGTCCTTGAAAATGAAT---ACTGTACG--AAAGCAATGATTTGAAAAGTTACTTTTTTGAG-AA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAATCTTTATGAAGCTTTTGTTCGTTAATTTAGACGTATAAAATTAAAGAATTTGTCCT-CGACAAAACCAATTGTA--AT---------AATAATCTGTTGATTTTCCAC-TATTT-GTAAC-ATCCTGCATAA-TGATGAAAACCTTTTTCCTTGTCAT--TTTACCTTAT---C-TA---A------------TTA------------T------------GTGT--ATTTACATGCAT--TA-CTGTAACCATTCATTTGGTTTATGAGAAATAAA-T--GAAC----TGAA-CTTGA
gi|3 : CCAATTTCA-ACAGCAATAAAACGCTGATGTTCATACTTC-ACAAAAGGTATATGTTATCGTTTATATAA---AGATGAAGTTGTCTTTGAAAAT-T-A--TTTCGACA--TTTTAAATGACAGAA------AC-TTTATCTAGATTTAGAACTGGAAATCACAAGCT-TCCA-ATGG-AATCTGGTAGATGTGCATTGATAGACAGAAGCAAT--AGAAATG--------------------------GTGA-TGAGTTTCTTTAT-ATTATTG--AATGTCCT--GAAATGAAT---AATGTACG--AAAGCAAAG-CCTGAAAAGTTA-TTTTTTGAACAA-TGT-TAATGT-CATTAAATTAAAAAAAAAA-CCAACTACTCCAGTGT-AAA-----------TTTAGAAA----------------TTAGAGGTAT-AAATCAAAGAATTTGTCCTCCGACATAACCATATGTGCAATGTTAATGGCAATAATTTATTAATTTAC--------T-GTAATGATTTTCAATGA-TGTTAGAGACCT
gi|4 : GAAAACTGTGGTATTAAATATTAC---TTC-TTAATGTGTGTGTTTTA--ATGACTA-TG--AATGTCTT--GAAATGAAT---AATGTCCG--AAAGCAATG-CTTAAAAAGTTACTTCTT-GAAGAA-TAC-TAATATA-ATTAAATT-----TAAAAAC---CTTTTGCA-----AAA-GTGTCAAAACCTTAAGAAGTTTGTGTTCGTTAATT-AGAAGTATAAA-TCAAAGAATTTATCCTCCGACATAACCATATGTG--AT---------AATAATTTGTTGATCTACTACCTTTTT-GTAAC-ATCCTGTATAA-TGATGAAAACCCTTTTCCGTGTCAT--ATTACCTTGT---CATG---AACTTT-------TTATATCGTATGTATT------------GTGT--ATTTACATGCAT--TCTCTGT-ACCATTTATTTGGTTTATGAGAAATAAA-T--TAAC---TTGAA-CTTGA
gi|5 : CAATTTTA-ACAGCAATGGAACTCCAAAGTTCATACGTCTCCAAACGGTAT-------CGTTTATATATTTTAGATGAATTTGTCTTTGAAA--ATCA--TTTACACACTTTTCAT-TGACCTAATAGG--A------TTTAGATTTAGAACTGGAAATCACAAGCT-TCCA-ATAGAAA-GTGGTATATGGGCAACGATAAACAGAA-----AGTG----GTGAT---------TAG---T-T-TTCATTATCCA----CATTA-----A-TGGAAATGTCCT--GAAATGAATATCAATGTACGAAAAAGCAATG-TTTGAAAACTTATTAATCTGAACAACTAT-TAATGTTCAATTAATA-----TAAAA-
gi|6 : gtaatTTTTCCAGTGC-AAAAGTGTCAAAACTTTAAGAAGTTTGTGTTTGTTAATT-AGA-GTATAAA-TCAAAGAATTTGTCCTCCGACATAGCCATATGTG--AT---------AATAATCTGTTGATTTACCAC-TATTTTGTAAC-ATCCTGTATAA-TGATGAATACCTTTTTCCTTGTCAT--ATTACCTTGT---CATG---AGCTATTTTATTTTTA------------TATCATATATATTGTGT--ATTTACATGCAT--TCTCTGTA-CCATTCATTTGGTTTATAAGAAATAAA-T--GAAC---TTGAA-CTaaaacaaaatactccgtggtaatgtcaaaacatgtata
gi|7 : ATGTCCT--GAAATGAAT---AATGTACG--AA-GCAA-G-CTTGAAAA-TTA---TTTTGAACAA-TATGGAATG-GCATTAAATT-----TAAAA-T---AAATT-CAGTGTAAAA-GTGTCAAAACTTT--TTAGTTTGTGTTTCTTAA-TTAGAAGTATAAAA
gi|8 : TCATGAATTACTATGTATTCATACATA------------TTG------------T------------TTATTAGTTTACATGTATGTTCTCTATA-CCAATTATTTGGTCTATGAGAAATAAATT--GAAC---TTGAAGCTTc
gi|9 : cctcctcgtaatattattA------------T------------ATAT--TTTTACA-GCAT--TCTCTGT-ACCA-TTATTTGG-TTAAGAG-AATAAA-TTGAAACTTATTGGA-CTTG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1 111111 11 11 1 1 1 1 555555555555555555 11 11 111 1 1 11111 111 1 11 333333333 1111111111111111111111111111111111111111111111111111111 22
lowQualScore : 8 0 2 7 5 0 444 1 0 222222 33 3 3 0 00 99 1 5 5 0 0 1 2 3 0 0 0 3 000000000000000000 66 0 88 8 11 88 111 99 3 3 2 9 0 6 6 5 66666 6 444 2 5 5 1 1 0 0 1 7 7 7 0 1 22 11 222222222 1 3 8 1 6 6 0 6 99 1111111111111111111111111111111111111111111111111111111 6 77 5 00 4 66 9999 4
lowQualScore : . . . . . . ... . . ...... .. . . . .. .. . . . . . . . . . . . . .................. .. . .. . .. .. ... .. . . . . . . . . ..... . ... . . . . . . . . . . . . . .. .. ......... . . . . . . . . .. ....................................................... . .. . .. . .. .... .
lowQualScore : 0 8 2 3 6 8 000 0 0 888888 88 2 2 2 00 00 0 0 0 0 0 2 5 2 8 6 8 8 000000000000000000 66 8 88 0 00 33 777 22 5 3 5 3 8 7 7 2 77777 7 000 5 7 7 9 0 7 4 4 3 5 3 0 4 88 00 000000000 4 2 0 0 7 7 3 7 22 5555555555555555555555555555555555555555555555555555555 7 99 0 11 4 11 7777 4
consensus : CCAATTTCA-ACAGCAATGGAACACTGACGTTCATACTTCTCCAAAAGGTATATGTTATCGTTTATATA---AAGNTGAATTTGTCTTTG-AAATTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATNTAGATTTAGAACTGGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAATAATTGATGATTGAGTTTCATTAT-ATTA-TG--AATGTCCT--GAAATGAAT---AATGTACG--AAAGCAATG-CTTGAAAAGTTACTTTTTTGAACAA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAAACTTTANGAAGTTTGTGTTCGTTAATTTAGANGTATAAAATCAAAGAATTTGTCCTCCGACATAACCATATGTG--AT---------AATAATCTGTTGATTTACCAC-TATTT-GTAAC-ATCCTGTATAA-TGATGAAAACCTTTTTCCTTGTCAT--ATTACCTTGT---CAT-A---A---------T-T-TTTA------------T------------GTGTA-TTTACATGCAT--TCTCTGTAACCATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTTGA
Reference ( family-3004 ) : CCAATTTCA-ACAGCAATGGAACACTGACGTTCATACTTCTCCAAAAGGTATATGTTATCGTTTATATA---AAGNTGAATTTGTCTTTG-AAATTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATNTAGATTTAGAACTGGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAATNATTGATGATTGAGTTTCATTAT-ATTA-TG--AATGTCCT--GAAATGAAT---AATGTACG--AAAGCAATG-CTTGAAAAGTTACTTTTTTGAACAA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAAACTTTANGAAGTTTGTGTTCGTTAATTTAGANGTATAAAATCAAAGAATTTGTCCTCCGACATAACCATATGTG--AT---------AATAATCTGTTGATTTACCAC-TATTT-GTAAC-ATCCTGTATAA-TGATGAAAACCTTTTTCCTTGTCAT--ATTACCTTGT---CAT-A---A---------C-T-TTTA------------T------------GTGTA-TTTACATGCAT--TCTCTGTAACCATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTTGA
gi|1 : CCAATTTCATACAGCAATGGGACACTGACGTTCA-ACTTCTCCAAAAGGTAT-TGTTATCATTTATATA---AAGCTGAATTTGTCTTTG-AAATTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATGTAGATTTAGAACTAGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAATAATTGATGATTGAGTTTCATTAT-ATTA-TG--AATGTCCTTGAAAATGAAT---ACTGTACG--AAAGCAATGATTTGAAAAGTTACTTTTTTGAG-AA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAATCTTTATGAAGCTTTTGTTCGTTAATTTAGACGTATAAAATTAAAGAATTTGTCCT-CGACAAAACCAATTGTA--AT---------AATAATCTGTTGATTTTCCAC-TATTT-GTAAC-ATCCTGCATAA-TGATGAAAACCTTTTTCCTTGTCAT--TTTACCTTAT---C-T-A---A--------------TTA------------T------------GTGTA-TTTACATGCAT--TA-CTGTAACCATTCATTTGGTTTATGAGAAATAAA-T--GAAC----TGAA-CTTGA
gi|10 : T--TCTCTGTA-CCATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTTG
gi|11 : CAATTTCA-ACAGCAATGCA-CACTGATGTTCATACTTCTCCAAAAGATAT
gi|12 : tCTGTA--CATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTT
gi|13 : tcTTT-GTAAC-ATCCTGTATAAATGATGAAAACCTTTTTCCTTGTCAT--ATTtga
gi|14 : GATGTTCATACATTTCCAAAAGGTATATGTTATCGTTTGTATA---
gi|15 : TGTA-CCATTTATTTGGTTTATGAGAAATAAG-T--GAAC---TTGAA-CTTGAtaatg
gi|16 : -AAA-GTGTCAAAACTTTAAGAAGTTTGTGTTTGTTAAT
gi|2 : aCCAATTTAT-ACAGCAATGGGACACTGACGTTCA-ACTTCTCCAAAAGGTATATGTTATCATT-ATATA---AAGCTGAATTTGTCTTTG-AAATTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATGTAGATTTAGAACTAGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAATAATTGATGATTGAGTTTCATTAT-ATTA-TG--AATGTCCTTGAAAATGAAT---ACTGTACG--AAAGCAATGATTTGAAAAGTTACTTTTTTGAG-AA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAATCTTTATGAAGCTTTTGTTCGTTAATTTAGACGTATAAAATTAAAGAATTTGTCCT-CGACAAAACCAATTGTA--AT---------AATAATCTGTTGATTTTCCAC-TATTT-GTAAC-ATCCTGCATAA-TGATGAAAACCTTTTTCCTTGTCAT--TTTACCTTAT---C-T-A---A--------------TTA------------T------------GTGTA-TTTACATGCAT--TA-CTGTAACCATTCATTTGGTTTATGAGAAATAAA-T--GAAC----TGAA-CTTGA
gi|3 : CCAATTTCA-ACAGCAATAAAACGCTGATGTTCATACTTC-ACAAAAGGTATATGTTATCGTTTATATA---AAGATGAAGTTGTCTTTGAAAATT----ATTTCGACA--TTTTAAATGACAGA------AAC-TTTATCTAGATTTAGAACTGGAAATCACAAGCT-TCCA-ATGG-AATCTGGTAGATGTGCATTGATAGACAGAAGCAAT--AGAAATG-G---------------------TGATG----AGTTTCTTTAT-ATTATTG--AATGTCCT--GAAATGAAT---AATGTACG--AAAGCAAAG-CCTGAAAAGTTA-TTTTTTGAACAA-TGT-TAATGT-CATTAAATTAAAAAAAAAA-CCAACTACTCCAGTGT-AAA-----------TTTAGAAA----------------TTAGAGGTAT-AAATCAAAGAATTTGTCCTCCGACATAACCATATGTGCAATGTTAATGGCAATAATTTATTAATTTAC--------T-GTAATGATTTTCAATGA-TGTTAGAGACCT
gi|4 : GAAAACTGTGGTATTAAATATTAC---TTCTTAATGTGTGTGTTTTA--ATGACTA-TG--AATGTCTT--GAAATGAAT---AATGTCCG--AAAGCAATG-CTTAAAAAGTTACTTCTT-GAAGAA-TAC-TAATATA-ATTAAATT-----TAAAAAC---CTTTTGCA-----AAA-GTGTCAAAACCTTAAGAAGTTTGTGTTCGTTAATT-AGAAGTATAAA-TCAAAGAATTTATCCTCCGACATAACCATATGTG--AT---------AATAATTTGTTGATCTACTACCTTTTT-GTAAC-ATCCTGTATAA-TGATGAAAACCCTTTTCCGTGTCAT--ATTACCTTGT---CATGA---A---------CTT-TTTATATCGTATGTATT------------GTGTA-TTTACATGCAT--TCTCTGT-ACCATTTATTTGGTTTATGAGAAATAAA-T--TAAC---TTGAA-CTTGA
gi|5 : CAATTTTA-ACAGCAATGGAACTCCAAAGTTCATACGTCTCCAAACGG-------TATCGTTTATATATTTTAGATGAATTTGTCTTTG-AAA--AT-CATTTACACACTTTTC-ATTGACCTAATAGG--------ATTTAGATTTAGAACTGGAAATCACAAGCT-TCCA-ATAGAAA-GTGGTATATGGGCAACGATAAACAGAA-----AGTG----GTGAT------TAGT-----T--TTCATTATCCA----CATTA-----A-TGGAAATGTCCT--GAAATGAATATCAATGTACGAAAAAGCAATG-TTTGAAAACTTATTAATCTGAACAACTAT-TAATGTTCAATTAATA-----TAAAA-
gi|6 : gtaatTTTTCCAGTGC-AAAAGTGTCAAAACTTTAAGAAGTTTGTGTTTGTTAATT-AGA-GTATAAA-TCAAAGAATTTGTCCTCCGACATAGCCATATGTG--AT---------AATAATCTGTTGATTTACCAC-TATTTTGTAAC-ATCCTGTATAA-TGATGAATACCTTTTTCCTTGTCAT--ATTACCTTGT---CAT-G---AGCTATTTTAT-T-TTTA------------TATCATATATATTGTGTA-TTTACATGCAT--TCTCTGTA-CCATTCATTTGGTTTATAAGAAATAAA-T--GAAC---TTGAA-CTaaaacaaaatactccgtggtaatgtcaaaacatgtata
gi|7 : ATGTCCT--GAAATGAAT---AATGTACG---AAGCAA-G-CTTGAAAA-TTA---TTTTGAACAA-TATGGAATG-GCATTAAATT-----TAAAA-T---AAATT-CAGTGTAAAA-GTGTCAAAACTTTTT--AGTTTGTGTTTCTTAA-TTAGAAGTATAAAA
gi|8 : TCATGAATTACTATGTATTCAT-ACATA---------T-TGTTTA------------T---------------TAGTTTACATGTATGTTCTCTATA-CCAATTATTTGGTCTATGAGAAATAAATT--GAAC---TTGAAGCTTc
gi|9 : cctcctcgtaatattattA------------T------------ATATT-TTTACA-GCAT--TCTCTGT-ACCA-TTATTTGG-TTAAGAG-AATAAA-TTGAAACTTATTGGA-CTTG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 111 1 111111 11 11 1 1 1 1 444444444444444444 11 11 111 1 1 11111 111 1 11 333333333 00000000000000000000000000000000000000000000000000000 22
lowQualScore : 8 0 2 7 5 0 444 1 0 222222 33 3 3 0 00 99 1 5 5 0 0 1 2 3 0 0 0 3 999999999999999999 66 0 88 8 11 88 111 99 3 3 2 9 0 6 6 5 66666 6 444 2 5 5 1 1 0 0 1 7 7 7 0 1 22 11 222222222 1 3 8 1 6 6 0 6 99 33333333333333333333333333333333333333333333333333333 6 77 5 00 4 66 9999 4
lowQualScore : . . . . . . ... . . ...... .. . . . .. .. . . . . . . . . . . . . .................. .. . .. . .. .. ... .. . . . . . . . . ..... . ... . . . . . . . . . . . . . .. .. ......... . . . . . . . . .. ..................................................... . .. . .. . .. .... .
lowQualScore : 0 8 2 3 6 8 000 0 0 888888 88 2 2 2 00 00 0 0 0 0 0 2 5 2 8 6 8 8 222222222222222222 66 8 88 0 00 33 777 22 5 3 5 3 8 7 7 2 77777 7 000 5 7 7 9 0 7 4 4 3 5 3 0 4 88 00 000000000 4 2 0 0 7 7 3 7 22 77777777777777777777777777777777777777777777777777777 7 99 0 11 4 11 7777 4
consensus : CCAATTTCA-ACAGCAATGGAACACTGACGTTCATACTTCTCCAAAAGGTATATGTTATCGTTTATATA---AAGNTGAATTTGTCTTTG-AAATTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATNTAGATTTAGAACTGGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAATAATTGATGATTGAGTTTCATTAT-ATTA-TG--AATGTCCT--GAAATGAAT---AATGTACG--AAAGCAATG-CTTGAAAAGTTACTTTTTTGAACAA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAAACTTTANGAAGTTTGTGTTCGTTAATTTAGANGTATAAAATCAAAGAATTTGTCCTCCGACATAACCATATGTG--AT---------AATAATCTGTTGATTTACCA-CTATTT-GTAAC-ATCCTGTATAA-TGATGAAAACCTTTTTCCTTGTCAT--ATTACCTTGT---CATA---A-C-------TT-TTTA------------T------------GTGTA-TTTACATGCAT--TCTCTGTAACCATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTTGA
Reference ( family-3004 ) : CCAATTTCA-ACAGCAATGGAACACTGACGTTCATACTTCTCCAAAAGGTATATGTTATCGTTTATATA---AAGNTGAATTTGTCTTTG-AAATTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATNTAGATTTAGAACTGGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAATAATTGATGATTGAGTTTCATTAT-ATTA-TG--AATGTCCT--GAAATGAAT---AATGTACG--AAAGCAATG-CTTGAAAAGTTACTTTTTTGAACAA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAAACTTTANGAAGTTTGTGTTCGTTAATTTAGANGTATAAAATCAAAGAATTTGTCCTCCGACATAACCATATGTG--AT---------AATAATCTGTTGATTTACCA-CTATTT-GTAAC-ATCCTGTATAA-TGATGAAAACCTTTTTCCTTGTCAT--ATTACCTTGT---CATA---A---------TT-TTTA------------T------------GTGTA-TTTACATGCAT--TCTCTGTAACCATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTTGA
gi|1 : CCAATTTCATACAGCAATGGGACACTGACGTTCA-ACTTCTCCAAAAGGTAT-TGTTATCATTTATATA---AAGCTGAATTTGTCTTTG-AAATTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATGTAGATTTAGAACTAGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAATAATTGATGATTGAGTTTCATTAT-ATTA-TG--AATGTCCTTGAAAATGAAT---ACTGTACG--AAAGCAATGATTTGAAAAGTTACTTTTTTGAG-AA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAATCTTTATGAAGCTTTTGTTCGTTAATTTAGACGTATAAAATTAAAGAATTTGTCCT-CGACAAAACCAATTGTA--AT---------AATAATCTGTTGATTTTCCA-CTATTT-GTAAC-ATCCTGCATAA-TGATGAAAACCTTTTTCCTTGTCAT--TTTACCTTAT---C-TA---A-------------TTA------------T------------GTGTA-TTTACATGCAT--TA-CTGTAACCATTCATTTGGTTTATGAGAAATAAA-T--GAAC----TGAA-CTTGA
gi|10 : T--TCTCTGTA-CCATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTTG
gi|11 : CAATTTCA-ACAGCAATGCA-CACTGATGTTCATACTTCTCCAAAAGATAT
gi|12 : tCTGTA--CATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTT
gi|13 : tcTTT-GTAAC-ATCCTGTATAAATGATGAAAACCTTTTTCCTTGTCAT--ATTtga
gi|14 : GATGTTCATACATTTCCAAAAGGTATATGTTATCGTTTGTATA---
gi|15 : TGTA-CCATTTATTTGGTTTATGAGAAATAAG-T--GAAC---TTGAA-CTTGAtaatg
gi|16 : -AAA-GTGTCAAAACTTTAAGAAGTTTGTGTTTGTTAAT
gi|2 : aCCAATTTAT-ACAGCAATGGGACACTGACGTTCA-ACTTCTCCAAAAGGTATATGTTATCATT-ATATA---AAGCTGAATTTGTCTTTG-AAATTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATGTAGATTTAGAACTAGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAATAATTGATGATTGAGTTTCATTAT-ATTA-TG--AATGTCCTTGAAAATGAAT---ACTGTACG--AAAGCAATGATTTGAAAAGTTACTTTTTTGAG-AA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAATCTTTATGAAGCTTTTGTTCGTTAATTTAGACGTATAAAATTAAAGAATTTGTCCT-CGACAAAACCAATTGTA--AT---------AATAATCTGTTGATTTTCCA-CTATTT-GTAAC-ATCCTGCATAA-TGATGAAAACCTTTTTCCTTGTCAT--TTTACCTTAT---C-TA---A-------------TTA------------T------------GTGTA-TTTACATGCAT--TA-CTGTAACCATTCATTTGGTTTATGAGAAATAAA-T--GAAC----TGAA-CTTGA
gi|3 : CCAATTTCA-ACAGCAATAAAACGCTGATGTTCATACTTC-ACAAAAGGTATATGTTATCGTTTATATA---AAGATGAAGTTGTCTTTGAAAATT----ATTTCGACA--TTTTAAATGACAGA------AAC-TTTATCTAGATTTAGAACTGGAAATCACAAGCT-TCCA-ATGG-AATCTGGTAGATGTGCATTGATAGACAGAAGCAAT--AGAAATG-G---------------------TGATG----AGTTTCTTTAT-ATTATTG--AATGTCCT--GAAATGAAT---AATGTACG--AAAGCAAAG-CCTGAAAAGTTA-TTTTTTGAACAA-TGT-TAATGT-CATTAAATTAAAAAAAAAA-CCAACTACTCCAGTGT-AAA-----------TTTAGAAA----------------TTAGAGGTAT-AAATCAAAGAATTTGTCCTCCGACATAACCATATGTGCAATGTTAATGGCAATAATTTATTAATTTAC--------T-GTAATGATTTTCAATGA-TGTTAGAGACCT
gi|4 : GAAAACTGTGGTATTAAATATTAC---TTCTTAATGTGTGTGTTTTA--ATGACTA-TG--AATGTCTT--GAAATGAAT---AATGTCCG--AAAGCAATG-CTTAAAAAGTTACTTCTT-GAAGAA-TAC-TAATATA-ATTAAATT-----TAAAAAC---CTTTTGCA-----AAA-GTGTCAAAACCTTAAGAAGTTTGTGTTCGTTAATT-AGAAGTATAAA-TCAAAGAATTTATCCTCCGACATAACCATATGTG--AT---------AATAATTTGTTGATCTACTACCTTTTT-GTAAC-ATCCTGTATAA-TGATGAAAACCCTTTTCCGTGTCAT--ATTACCTTGT---CATG---AAC-------TT-TTTATATCGTATGTATT------------GTGTA-TTTACATGCAT--TCTCTGT-ACCATTTATTTGGTTTATGAGAAATAAA-T--TAAC---TTGAA-CTTGA
gi|5 : CAATTTTA-ACAGCAATGGAACTCCAAAGTTCATACGTCTCCAAACGG-------TATCGTTTATATATTTTAGATGAATTTGTCTTTG-AAA--AT-CATTTACACACTTTTC-ATTGACCTAATAGG--------ATTTAGATTTAGAACTGGAAATCACAAGCT-TCCA-ATAGAAA-GTGGTATATGGGCAACGATAAACAGAA-----AGTG----GTGAT------TAGT-----T--TTCATTATCCA----CATTA-----A-TGGAAATGTCCT--GAAATGAATATCAATGTACGAAAAAGCAATG-TTTGAAAACTTATTAATCTGAACAACTAT-TAATGTTCAATTAATA-----TAAAA-
gi|6 : gtaatTTTTCCAGTGC-AAAAGTGTCAAAACTTTAAGAAGTTTGTGTTTGTTAATT-AGA-GTATAAA-TCAAAGAATTTGTCCTCCGACATAGCCATATGTG--AT---------AATAATCTGTTGATTTACCA-CTATTTTGTAAC-ATCCTGTATAA-TGATGAATACCTTTTTCCTTGTCAT--ATTACCTTGT---CATG---AGCTATTTTATT-TTTA------------TATCATATATATTGTGTA-TTTACATGCAT--TCTCTGTA-CCATTCATTTGGTTTATAAGAAATAAA-T--GAAC---TTGAA-CTaaaacaaaatactccgtggtaatgtcaaaacatgtata
gi|7 : ATGTCCT--GAAATGAAT---AATGTACG---AAGCAA-G-CTTGAAAA-TTA---TTTTGAACAA-TATGGAATG-GCATTAAATT-----TAAAA-T---AAATT-CAGTGTAAAA-GTGTCAAAACTTTTT--AGTTTGTGTTTCTTAA-TTAGAAGTATAAAA
gi|8 : TCATGAATTACTATGTATTCATACATA---------TTGTTTA------------T---------------TAGTTTACATGTATGTTCTCTATA-CCAATTATTTGGTCTATGAGAAATAAATT--GAAC---TTGAAGCTTc
gi|9 : cctcctcgtaatattattA------------T------------ATATT-TTTACA-GCAT--TCTCTGT-ACCA-TTATTTGG-TTAAGAG-AATAAA-TTGAAACTTATTGGA-CTTG
Alignments
lowQualScore : 111 1 111111 11 11 1 1 1 1 444444444444444444 11 11 111 1 1 11111 111 1 11 333333333 99999999999999999999999999999999999999999999999999999 22
lowQualScore : 8 0 2 7 5 0 444 1 0 222222 33 3 3 0 00 99 1 5 5 0 0 1 2 3 0 0 0 3 999999999999999999 66 0 88 8 11 88 111 99 3 3 2 9 0 6 6 5 66666 6 444 2 5 5 1 1 0 0 1 7 7 7 0 1 22 11 222222222 1 3 8 1 6 6 0 6 99 99999999999999999999999999999999999999999999999999999 6 77 5 00 4 66 9999 4
lowQualScore : . . . . . . ... . . ...... .. . . . .. .. . . . . . . . . . . . . .................. .. . .. . .. .. ... .. . . . . . . . . ..... . ... . . . . . . . . . . . . . .. .. ......... . . . . . . . . .. ..................................................... . .. . .. . .. .... .
lowQualScore : 0 8 2 3 6 8 000 0 0 888888 88 2 2 2 00 00 0 0 0 0 0 2 5 2 8 6 8 8 222222222222222222 66 8 88 0 00 33 777 22 5 3 5 3 8 7 7 2 77777 7 000 5 7 7 9 0 7 4 4 3 5 3 0 4 88 00 000000000 4 2 0 0 7 7 3 7 22 77777777777777777777777777777777777777777777777777777 7 99 0 11 4 11 7777 4
consensus : CCAATTTCA-ACAGCAATGGAACACTGACGTTCATACTTCTCCAAAAGGTATATGTTATCGTTTATATA---AAGNTGAATTTGTCTTTG-AAATTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATNTAGATTTAGAACTGGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAATAATTGATGATTGAGTTTCATTAT-ATTA-TG--AATGTCCT--GAAATGAAT---AATGTACG--AAAGCAATG-CTTGAAAAGTTACTTTTTTGAACAA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAAACTTTANGAAGTTTGTGTTCGTTAATTTAGANGTATAAAATCAAAGAATTTGTCCTCCGACATAACCATATGTG--AT---------AATAATCTGTTGATTTACCAC-TATTT-GTAAC-ATCCTGTATAA-TGATGAAAACCTTTTTCCTTGTCAT--ATTACCTTGT---CAT-A---A-CT-------TTTTA------------T------------GTGTA-TTTACATGCAT--TCTCTGTAACCATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTTGA
Reference ( family-3004 ) : CCAATTTCA-ACAGCAATGGAACACTGACGTTCATACTTCTCCAAAAGGTATATGTTATCGTTTATATA---AAGNTGAATTTGTCTTTG-AAATTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATNTAGATTTAGAACTGGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAATAATTGATGATTGAGTTTCATTAT-ATTA-TG--AATGTCCT--GAAATGAAT---AATGTACG--AAAGCAATG-CTTGAAAAGTTACTTTTTTGAACAA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAAACTTTANGAAGTTTGTGTTCGTTAATTTAGANGTATAAAATCAAAGAATTTGTCCTCCGACATAACCATATGTG--AT---------AATAATCTGTTGATTTACCAC-TATTT-GTAAC-ATCCTGTATAA-TGATGAAAACCTTTTTCCTTGTCAT--ATTACCTTGT---CAT-A---A-CT-------TTTTA------------T------------GTGTA-TTTACATGCAT--TCTCTGTAACCATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTTGA
gi|1 : CCAATTTCATACAGCAATGGGACACTGACGTTCA-ACTTCTCCAAAAGGTAT-TGTTATCATTTATATA---AAGCTGAATTTGTCTTTG-AAATTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATGTAGATTTAGAACTAGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAATAATTGATGATTGAGTTTCATTAT-ATTA-TG--AATGTCCTTGAAAATGAAT---ACTGTACG--AAAGCAATGATTTGAAAAGTTACTTTTTTGAG-AA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAATCTTTATGAAGCTTTTGTTCGTTAATTTAGACGTATAAAATTAAAGAATTTGTCCT-CGACAAAACCAATTGTA--AT---------AATAATCTGTTGATTTTCCAC-TATTT-GTAAC-ATCCTGCATAA-TGATGAAAACCTTTTTCCTTGTCAT--TTTACCTTAT---C-T-A---A------------TTA------------T------------GTGTA-TTTACATGCAT--TA-CTGTAACCATTCATTTGGTTTATGAGAAATAAA-T--GAAC----TGAA-CTTGA
gi|10 : T--TCTCTGTA-CCATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTTG
gi|11 : CAATTTCA-ACAGCAATGCA-CACTGATGTTCATACTTCTCCAAAAGATAT
gi|12 : tCTGTA--CATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTT
gi|13 : tcTTT-GTAAC-ATCCTGTATAAATGATGAAAACCTTTTTCCTTGTCAT--ATTtga
gi|14 : GATGTTCATACATTTCCAAAAGGTATATGTTATCGTTTGTATA---
gi|15 : TGTA-CCATTTATTTGGTTTATGAGAAATAAG-T--GAAC---TTGAA-CTTGAtaatg
gi|16 : -AAA-GTGTCAAAACTTTAAGAAGTTTGTGTTTGTTAAT
gi|2 : aCCAATTTAT-ACAGCAATGGGACACTGACGTTCA-ACTTCTCCAAAAGGTATATGTTATCATT-ATATA---AAGCTGAATTTGTCTTTG-AAATTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATGTAGATTTAGAACTAGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAATAATTGATGATTGAGTTTCATTAT-ATTA-TG--AATGTCCTTGAAAATGAAT---ACTGTACG--AAAGCAATGATTTGAAAAGTTACTTTTTTGAG-AA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAATCTTTATGAAGCTTTTGTTCGTTAATTTAGACGTATAAAATTAAAGAATTTGTCCT-CGACAAAACCAATTGTA--AT---------AATAATCTGTTGATTTTCCAC-TATTT-GTAAC-ATCCTGCATAA-TGATGAAAACCTTTTTCCTTGTCAT--TTTACCTTAT---C-T-A---A------------TTA------------T------------GTGTA-TTTACATGCAT--TA-CTGTAACCATTCATTTGGTTTATGAGAAATAAA-T--GAAC----TGAA-CTTGA
gi|3 : CCAATTTCA-ACAGCAATAAAACGCTGATGTTCATACTTC-ACAAAAGGTATATGTTATCGTTTATATA---AAGATGAAGTTGTCTTTGAAAATT----ATTTCGACA--TTTTAAATGACAGA------AAC-TTTATCTAGATTTAGAACTGGAAATCACAAGCT-TCCA-ATGG-AATCTGGTAGATGTGCATTGATAGACAGAAGCAAT--AGAAATG-G---------------------TGATG----AGTTTCTTTAT-ATTATTG--AATGTCCT--GAAATGAAT---AATGTACG--AAAGCAAAG-CCTGAAAAGTTA-TTTTTTGAACAA-TGT-TAATGT-CATTAAATTAAAAAAAAAA-CCAACTACTCCAGTGT-AAA-----------TTTAGAAA----------------TTAGAGGTAT-AAATCAAAGAATTTGTCCTCCGACATAACCATATGTGCAATGTTAATGGCAATAATTTATTAATTTAC--------T-GTAATGATTTTCAATGA-TGTTAGAGACCT
gi|4 : GAAAACTGTGGTATTAAATATTAC---TTCTTAATGTGTGTGTTTTA--ATGACTA-TG--AATGTCTT--GAAATGAAT---AATGTCCG--AAAGCAATG-CTTAAAAAGTTACTTCTT-GAAGAA-TAC-TAATATA-ATTAAATT-----TAAAAAC---CTTTTGCA-----AAA-GTGTCAAAACCTTAAGAAGTTTGTGTTCGTTAATT-AGAAGTATAAA-TCAAAGAATTTATCCTCCGACATAACCATATGTG--AT---------AATAATTTGTTGATCTACTACCTTTTT-GTAAC-ATCCTGTATAA-TGATGAAAACCCTTTTCCGTGTCAT--ATTACCTTGT---CATGA---A-CT-------TTTTATATCGTATGTATT------------GTGTA-TTTACATGCAT--TCTCTGT-ACCATTTATTTGGTTTATGAGAAATAAA-T--TAAC---TTGAA-CTTGA
gi|5 : CAATTTTA-ACAGCAATGGAACTCCAAAGTTCATACGTCTCCAAACGG-------TATCGTTTATATATTTTAGATGAATTTGTCTTTG-AAA--AT-CATTTACACACTTTTC-ATTGACCTAATAGG--------ATTTAGATTTAGAACTGGAAATCACAAGCT-TCCA-ATAGAAA-GTGGTATATGGGCAACGATAAACAGAA-----AGTG----GTGAT------TAGT-----T--TTCATTATCCA----CATTA-----A-TGGAAATGTCCT--GAAATGAATATCAATGTACGAAAAAGCAATG-TTTGAAAACTTATTAATCTGAACAACTAT-TAATGTTCAATTAATA-----TAAAA-
gi|6 : gtaatTTTTCCAGTGC-AAAAGTGTCAAAACTTTAAGAAGTTTGTGTTTGTTAATT-AGA-GTATAAA-TCAAAGAATTTGTCCTCCGACATAGCCATATGTG--AT---------AATAATCTGTTGATTTACCAC-TATTTTGTAAC-ATCCTGTATAA-TGATGAATACCTTTTTCCTTGTCAT--ATTACCTTGT---CAT-G---AGCTATTTTATTTTTA------------TATCATATATATTGTGTA-TTTACATGCAT--TCTCTGTA-CCATTCATTTGGTTTATAAGAAATAAA-T--GAAC---TTGAA-CTaaaacaaaatactccgtggtaatgtcaaaacatgtata
gi|7 : ATGTCCT--GAAATGAAT---AATGTACG---AAGCAA-G-CTTGAAAA-TTA---TTTTGAACAA-TATGGAATG-GCATTAAATT-----TAAAA-T---AAATT-CAGTGTAAAA-GTGTCAAAACTTTTT--AGTTTGTGTTTCTTAA-TTAGAAGTATAAAA
gi|8 : TCATGAATTACTATGTATTCAT-ACATA-TT-------GTTTA------------T---------------TAGTTTACATGTATGTTCTCTATA-CCAATTATTTGGTCTATGAGAAATAAATT--GAAC---TTGAAGCTTc
gi|9 : cctcctcgtaatattattA------------T------------ATATT-TTTACA-GCAT--TCTCTGT-ACCA-TTATTTGG-TTAAGAG-AATAAA-TTGAAACTTATTGGA-CTTG
Alignments
lowQualScore : 111 1 111111 11 11 1 1 1 1 444444444444444444 11 11 111 1 1 11111 111 1 11 333333333 99999999999999999999999999999999999999999999999999999 22
lowQualScore : 8 0 2 7 5 0 444 1 0 222222 33 3 3 0 00 99 1 5 5 0 0 1 2 3 0 0 0 3 999999999999999999 66 0 88 8 11 88 111 99 3 3 2 9 0 6 6 5 66666 6 444 2 5 5 1 1 0 0 1 7 7 7 0 1 22 11 222222222 1 3 8 1 6 6 0 6 99 99999999999999999999999999999999999999999999999999999 6 77 5 00 4 66 9999 4
lowQualScore : . . . . . . ... . . ...... .. . . . .. .. . . . . . . . . . . . . .................. .. . .. . .. .. ... .. . . . . . . . . ..... . ... . . . . . . . . . . . . . .. .. ......... . . . . . . . . .. ..................................................... . .. . .. . .. .... .
lowQualScore : 0 8 2 3 6 8 000 0 0 888888 88 2 2 2 00 00 0 0 0 0 0 2 5 2 8 6 8 8 222222222222222222 66 8 88 0 00 33 777 22 5 3 5 3 8 7 7 2 77777 7 000 5 7 7 9 0 7 4 4 3 5 3 0 4 88 00 000000000 4 2 0 0 7 7 3 7 22 77777777777777777777777777777777777777777777777777777 7 99 0 11 4 11 7777 4
consensus : CCAATTTCA-ACAGCAATGGAACACTGACGTTCATACTTCTCCAAAAGGTATATGTTATCGTTTATATA---AAGNTGAATTTGTCTTTG-AAATTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATNTAGATTTAGAACTGGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAATAATTGATGATTGAGTTTCATTAT-ATTA-TG--AATGTCCT--GAAATGAAT---AATGTACG--AAAGCAATG-CTTGAAAAGTTACTTTTTTGAACAA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAAACTTTANGAAGTTTGTGTTCGTTAATTTAGANGTATAAAATCAAAGAATTTGTCCTCCGACATAACCATATGTG--AT---------AATAATCTGTTGATTTACCAC-TATTT-GTAAC-ATCCTGTATAA-TGATGAAAACCTTTTTCCTTGTCAT--ATTACCTTGT---CAT-A---A-CT-------TTTTA------------T------------GTGTA-TTTACATGCAT--TCTCTGTAACCATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTTGA
Reference ( family-3004 ) : CCAATTTCA-ACAGCAATGGAACACTGACGTTCATACTTCTCCAAAAGGTATATGTTATCGTTTATATA---AAGNTGAATTTGTCTTTG-AAATTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATNTAGATTTAGAACTGGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAATAATTGATGATTGAGTTTCATTAT-ATTA-TG--AATGTCCT--GAAATGAAT---AATGTACG--AAAGCAATG-CTTGAAAAGTTACTTTTTTGAACAA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAAACTTTANGAAGTTTGTGTTCGTTAATTTAGANGTATAAAATCAAAGAATTTGTCCTCCGACATAACCATATGTG--AT---------AATAATCTGTTGATTTACCAC-TATTT-GTAAC-ATCCTGTATAA-TGATGAAAACCTTTTTCCTTGTCAT--ATTACCTTGT---CAT-A---A-CT-------TTTTA------------T------------GTGTA-TTTACATGCAT--TCTCTGTAACCATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTTGA
gi|1 : CCAATTTCATACAGCAATGGGACACTGACGTTCA-ACTTCTCCAAAAGGTAT-TGTTATCATTTATATA---AAGCTGAATTTGTCTTTG-AAATTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATGTAGATTTAGAACTAGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAATAATTGATGATTGAGTTTCATTAT-ATTA-TG--AATGTCCTTGAAAATGAAT---ACTGTACG--AAAGCAATGATTTGAAAAGTTACTTTTTTGAG-AA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAATCTTTATGAAGCTTTTGTTCGTTAATTTAGACGTATAAAATTAAAGAATTTGTCCT-CGACAAAACCAATTGTA--AT---------AATAATCTGTTGATTTTCCAC-TATTT-GTAAC-ATCCTGCATAA-TGATGAAAACCTTTTTCCTTGTCAT--TTTACCTTAT---C-T-A---A------------TTA------------T------------GTGTA-TTTACATGCAT--TA-CTGTAACCATTCATTTGGTTTATGAGAAATAAA-T--GAAC----TGAA-CTTGA
gi|10 : T--TCTCTGTA-CCATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTTG
gi|11 : CAATTTCA-ACAGCAATGCA-CACTGATGTTCATACTTCTCCAAAAGATAT
gi|12 : tCTGTA--CATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTT
gi|13 : tcTTT-GTAAC-ATCCTGTATAAATGATGAAAACCTTTTTCCTTGTCAT--ATTtga
gi|14 : GATGTTCATACATTTCCAAAAGGTATATGTTATCGTTTGTATA---
gi|15 : TGTA-CCATTTATTTGGTTTATGAGAAATAAG-T--GAAC---TTGAA-CTTGAtaatg
gi|16 : -AAA-GTGTCAAAACTTTAAGAAGTTTGTGTTTGTTAAT
gi|2 : aCCAATTTAT-ACAGCAATGGGACACTGACGTTCA-ACTTCTCCAAAAGGTATATGTTATCATT-ATATA---AAGCTGAATTTGTCTTTG-AAATTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATGTAGATTTAGAACTAGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAATAATTGATGATTGAGTTTCATTAT-ATTA-TG--AATGTCCTTGAAAATGAAT---ACTGTACG--AAAGCAATGATTTGAAAAGTTACTTTTTTGAG-AA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAATCTTTATGAAGCTTTTGTTCGTTAATTTAGACGTATAAAATTAAAGAATTTGTCCT-CGACAAAACCAATTGTA--AT---------AATAATCTGTTGATTTTCCAC-TATTT-GTAAC-ATCCTGCATAA-TGATGAAAACCTTTTTCCTTGTCAT--TTTACCTTAT---C-T-A---A------------TTA------------T------------GTGTA-TTTACATGCAT--TA-CTGTAACCATTCATTTGGTTTATGAGAAATAAA-T--GAAC----TGAA-CTTGA
gi|3 : CCAATTTCA-ACAGCAATAAAACGCTGATGTTCATACTTC-ACAAAAGGTATATGTTATCGTTTATATA---AAGATGAAGTTGTCTTTGAAAATT----ATTTCGACA--TTTTAAATGACAGA------AAC-TTTATCTAGATTTAGAACTGGAAATCACAAGCT-TCCA-ATGG-AATCTGGTAGATGTGCATTGATAGACAGAAGCAAT--AGAAATG-G---------------------TGATG----AGTTTCTTTAT-ATTATTG--AATGTCCT--GAAATGAAT---AATGTACG--AAAGCAAAG-CCTGAAAAGTTA-TTTTTTGAACAA-TGT-TAATGT-CATTAAATTAAAAAAAAAA-CCAACTACTCCAGTGT-AAA-----------TTTAGAAA----------------TTAGAGGTAT-AAATCAAAGAATTTGTCCTCCGACATAACCATATGTGCAATGTTAATGGCAATAATTTATTAATTTAC--------T-GTAATGATTTTCAATGA-TGTTAGAGACCT
gi|4 : GAAAACTGTGGTATTAAATATTAC---TTCTTAATGTGTGTGTTTTA--ATGACTA-TG--AATGTCTT--GAAATGAAT---AATGTCCG--AAAGCAATG-CTTAAAAAGTTACTTCTT-GAAGAA-TAC-TAATATA-ATTAAATT-----TAAAAAC---CTTTTGCA-----AAA-GTGTCAAAACCTTAAGAAGTTTGTGTTCGTTAATT-AGAAGTATAAA-TCAAAGAATTTATCCTCCGACATAACCATATGTG--AT---------AATAATTTGTTGATCTACTACCTTTTT-GTAAC-ATCCTGTATAA-TGATGAAAACCCTTTTCCGTGTCAT--ATTACCTTGT---CATGA---A-CT-------TTTTATATCGTATGTATT------------GTGTA-TTTACATGCAT--TCTCTGT-ACCATTTATTTGGTTTATGAGAAATAAA-T--TAAC---TTGAA-CTTGA
gi|5 : CAATTTTA-ACAGCAATGGAACTCCAAAGTTCATACGTCTCCAAACGG-------TATCGTTTATATATTTTAGATGAATTTGTCTTTG-AAA--AT-CATTTACACACTTTTC-ATTGACCTAATAGG--------ATTTAGATTTAGAACTGGAAATCACAAGCT-TCCA-ATAGAAA-GTGGTATATGGGCAACGATAAACAGAA-----AGTG----GTGAT------TAGT-----T--TTCATTATCCA----CATTA-----A-TGGAAATGTCCT--GAAATGAATATCAATGTACGAAAAAGCAATG-TTTGAAAACTTATTAATCTGAACAACTAT-TAATGTTCAATTAATA-----TAAAA-
gi|6 : gtaatTTTTCCAGTGC-AAAAGTGTCAAAACTTTAAGAAGTTTGTGTTTGTTAATT-AGA-GTATAAA-TCAAAGAATTTGTCCTCCGACATAGCCATATGTG--AT---------AATAATCTGTTGATTTACCAC-TATTTTGTAAC-ATCCTGTATAA-TGATGAATACCTTTTTCCTTGTCAT--ATTACCTTGT---CAT-G---AGCTATTTTATTTTTA------------TATCATATATATTGTGTA-TTTACATGCAT--TCTCTGTA-CCATTCATTTGGTTTATAAGAAATAAA-T--GAAC---TTGAA-CTaaaacaaaatactccgtggtaatgtcaaaacatgtata
gi|7 : ATGTCCT--GAAATGAAT---AATGTACG---AAGCAA-G-CTTGAAAA-TTA---TTTTGAACAA-TATGGAATG-GCATTAAATT-----TAAAA-T---AAATT-CAGTGTAAAA-GTGTCAAAACTTTTT--AGTTTGTGTTTCTTAA-TTAGAAGTATAAAA
gi|8 : TCATGAATTACTATGTATTCAT-ACATA-TT-------GTTTA------------T---------------TAGTTTACATGTATGTTCTCTATA-CCAATTATTTGGTCTATGAGAAATAAATT--GAAC---TTGAAGCTTc
gi|9 : cctcctcgtaatattattA------------T------------ATATT-TTTACA-GCAT--TCTCTGT-ACCA-TTATTTGG-TTAAGAG-AATAAA-TTGAAACTTATTGGA-CTTG
blockSeqs : . T T A TTT C A TTATAA CT A A AT GC G G G A T A G A A ATCTGATAATACAAATAA AT TG T GA TG ATC AA T A G C C C G G AAAAA A CAA C A A A A T T C A C A AT CA GTTAATGGC T C C A T G A GA CATGAGCTATTTTATTTTTATATCATATATATTG G GT T AA T TG TTAT G
blockSeqs : . T T A . A . ATC . A A G T C . . . . T G A G ATTAAATATTACTTC TG T . . . . . A . G C G . . A . . . C . . T T T T G A C T TA . . A T . T . . . . CATGAACTTTTTATATCGTATGTATTG . . T A . . T .
blockSeqs : . C T A . A . TT . . . . . T . . . . G . . A TAGTT AT T . . . . . T . G T C . . T . . . G . . A G T T A A C T TA . . A C . A . . . . ATTCATACATATTGTTTAT . . T A . . T .
blockSeqs : . T T . . . . . . . . . . . T . C . C . . G . . . C . . A A T . A . . T TA . . A . . . . . . . CTAATTATG . . T A . . T .
blockSeqs : A . . . . . . . . . . . . . . . . . A A . . . . . . . . . . T A . . T .
blockSeqs : . . . T . . . A . . T .
blockSeqs : A . . T .
blockSeqs : A . . . .
blockSeqCons : TAT*************** ** A* T***
originalCons : CCAATTTCA-ACAGCAATGGAACACTGACGTTCATACTTCTCCAAAAGGTATATGTTATCGTTTATATA---AAGNTGAATTTGTCTTTG-AAATTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATNTAGATTTAGAACTGGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAATAATTGATGATTGAGTTTCATTAT-ATTA-TG--AATGTCCT--GAAATGAAT---AATGTACG--AAAGCAATG-CTTGAAAAGTTACTTTTTTGAACAA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAAACTTTANGAAGTTTGTGTTCGTTAATTTAGANGTATAAAATCAAAGAATTTGTCCTCCGACATAACCATATGTG--AT---------AATAATCTGTTGATTTACCAC-TATTT-GTAAC-ATCCTGTATAA-TGATGAAAACCTTTTTCCTTGTCAT--ATTACCTTGT---CAT-A---A-CT-------TTTTA------------T------------GTGTA-TTTACATGCAT--TCTCTGTAACCATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTTGA
finalCons : CCAATTTCA-ACAGCAATGGAACACTGACGTTCATACTTCTCCAAAAGGTATATGTTATCGTTTATATA---AAGNTGAATTTGTCTTTG-AAATTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATNTAGATTTAGAACTGGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATTAT---------------TTGATGATTGAGTTTCATTAT-ATTA-TG--AATGTCCT--GAAATGAAT---AATGTACG--AAAGCAATG-CTTGAAAAGTTACTTTTTTGAACAA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAAACTTTANGAAGTTTGTGTTCGTTAATTTAGANGTATAAAATCAAAGAATTTGTCCTCCGACATAACCATATGTG--AT---------AATAATCTGTTGATTTACCAC-TATTT-GTAAC-ATCCTGTATAA-TGATGAAAACCTTTTTCCTTGTCAT--ATTACCTTGT---CAT-A---A-CT-------TTTTA------------T------------GTGTA-TTTACATGCAT--TCTCTGTA-CCATTTATTTGGTTTATGAGAAATAAA-T--GAACT---TGAA-CTTGA
Alignments
lowQualScore : 111111111111111111111111111
lowQualScore : 111 11 11 11 1111111 1 1 1 1 444444444444444444444444444 2222 11 11 111 1 1 11111 111 1 11 333333333 99999999999999999999999999999999999999999999999999999
lowQualScore : 8 0 2 7 5 0 444 1 33 88 33 3 33 5555555 1 5 5 0 0 1 2 33 000000000000000000000000000 0 0 5555 8 8 11 88 111 99 3 3 2 9 0 6 6 5 66666 6 444 2 5 5 1 1 0 0 1 7 7 7 0 1 22 11 222222222 1 3 8 1 6 6 0 6 99 99999999999999999999999999999999999999999999999999999 6 77 5 8 4 66 9999 4
lowQualScore : . . . . . . ... . .. .. .. . .. ....... . . . . . . . .. ........................... . . .... . . .. .. ... .. . . . . . . . . ..... . ... . . . . . . . . . . . . . .. .. ......... . . . . . . . . .. ..................................................... . .. . . . .. .... .
lowQualScore : 0 8 2 3 6 8 000 0 22 55 88 2 55 2222222 0 0 0 0 0 2 5 55 888888888888888888888888888 8 8 0000 0 0 00 33 777 22 5 3 5 3 8 7 7 2 77777 7 000 5 7 7 9 0 7 4 4 3 5 3 0 4 88 00 000000000 4 2 0 0 7 7 3 7 22 77777777777777777777777777777777777777777777777777777 7 99 0 9 4 11 7777 4
consensus : CCAATTTCA-ACAGCAATGGAACACTGACGTTCATACTTCTCCAAAAGGTATATGTTATCGTTTATATA---AAGNTGAATTTGTCTTTGAAA-TTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATNTAGATTTAGAACTGGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAATAATTGATGATTGAGTTTCATTAT----ATT-AT-G--AATGTCCT--GAAATGAAT---AATGTACG--AAAGCAATG-CTTGAAAAGTTACTTTTTTGAACAA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAAACTTTANGAAGTTTGTGTTCGTTAATTTAGANGTATAAAATCAAAGAATTTGTCCTCCGACATAACCATATGTG--AT---------AATAATCTGTTGATTTACCAC-TATTT-GTAAC-ATCCTGTATAA-TGATGAAAACCTTTTTCCTTGTCAT--ATTACCTTGT---CAT-A---A-CT-------TTTTA------------T------------GTGTA-TTTACATGCAT--TCTCTGT-ACCATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTTGA
Reference ( family-3004 ) : CCAATTTCA-ACAGCAATGGAACACTGACGTTCATACTTCTCCAAAAGGTATATGTTATCGTTTATATA---AAGNTGAATTTGTCTTTGAAA-TTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATNTAGATTTAGAACTGGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGAT---------------TATTTGATGATTGAGTTTCATTAT----ATT-AT-G--AATGTCCT--GAAATGAAT---AATGTACG--AAAGCAATG-CTTGAAAAGTTACTTTTTTGAACAA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAAACTTTANGAAGTTTGTGTTCGTTAATTTAGANGTATAAAATCAAAGAATTTGTCCTCCGACATAACCATATGTG--AT---------AATAATCTGTTGATTTACCAC-TATTT-GTAAC-ATCCTGTATAA-TGATGAAAACCTTTTTCCTTGTCAT--ATTACCTTGT---CAT-A---A-CT-------TTTTA------------T------------GTGTA-TTTACATGCAT--TCTCTGT-ACCATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTTGA
gi|1 : CCAATTTCATACAGCAATGGGACACTGACGTTCA-ACTTCTCCAAAAGGTAT-TGTTATCATTTATATA---AAGCTGAATTTGTCTTTGAAA-TTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATGTAGATTTAGAACTAGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAATAATTGATGATTGAGTTTCATTAT----ATT-AT-G--AATGTCCTTGAAAATGAAT---ACTGTACG--AAAGCAATGATTTGAAAAGTTACTTTTTTGAG-AA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAATCTTTATGAAGCTTTTGTTCGTTAATTTAGACGTATAAAATTAAAGAATTTGTCCT-CGACAAAACCAATTGTA--AT---------AATAATCTGTTGATTTTCCAC-TATTT-GTAAC-ATCCTGCATAA-TGATGAAAACCTTTTTCCTTGTCAT--TTTACCTTAT---C-T-A---A------------TTA------------T------------GTGTA-TTTACATGCAT--TA-CTGTAACCATTCATTTGGTTTATGAGAAATAAA-T--GAAC----TGAA-CTTGA
gi|10 : T--TCTCTGT-ACCATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTTG
gi|11 : CAATTTCA-ACAGCAATGCA-CACTGATGTTCATACTTCTCCAAAAGATAT
gi|12 : tCTGT-AC-ATTTATTTGGTTTATGAGAAATAAA-T--GAAC---TTGAA-CTT
gi|13 : tcTTT-GTAAC-ATCCTGTATAAATGATGAAAACCTTTTTCCTTGTCAT--ATTtga
gi|14 : GATGTTCATACATTTCCAAAAGGTATATGTTATCGTTTGTATA---
gi|15 : TGT-ACCATTTATTTGGTTTATGAGAAATAAG-T--GAAC---TTGAA-CTTGAtaatg
gi|16 : -AAA-GTGTCAAAACTTTAAGAAGTTTGTGTTTGTTAAT
gi|2 : aCCAATTTAT-ACAGCAATGGGACACTGACGTTCA-ACTTCTCCAAAAGGTATATGTTATCATT-ATATA---AAGCTGAATTTGTCTTTGAAA-TTATAAATCTAGACA--TTTCAAATGACAGAATGGATAACGCTTATGTAGATTTAGAACTAGAAATCACAAGCTGCCCAGATAG-AA-CTGGTAGATGAGCATCGATAGACAGAAGCAATAGAGAAATGTGATATCTGATAATACAAATAATTGATGATTGAGTTTCATTAT----ATT-AT-G--AATGTCCTTGAAAATGAAT---ACTGTACG--AAAGCAATGATTTGAAAAGTTACTTTTTTGAG-AA-TAT-TAATGTGCATTAAATT-----TAAAA-C---CTTTTCCAGTGC-AAA-GTGTCAAATCTTTATGAAGCTTTTGTTCGTTAATTTAGACGTATAAAATTAAAGAATTTGTCCT-CGACAAAACCAATTGTA--AT---------AATAATCTGTTGATTTTCCAC-TATTT-GTAAC-ATCCTGCATAA-TGATGAAAACCTTTTTCCTTGTCAT--TTTACCTTAT---C-T-A---A------------TTA------------T------------GTGTA-TTTACATGCAT--TA-CTGTAACCATTCATTTGGTTTATGAGAAATAAA-T--GAAC----TGAA-CTTGA
gi|3 : CCAATTTCA-ACAGCAATAAAACGCTGATGTTCATACTTC-ACAAAAGGTATATGTTATCGTTTATATA---AAGATGAAGTTGTCTTTGAAAATTAT----TTCGACA--TTTTAAATGACAGAA------AC-TTTATCTAGATTTAGAACTGGAAATCACAAGCT-TCCA-ATGG-AATCTGGTAGATGTGCATTGATAGACAGAAGCAATAGAAA---------------------------TGGTGAT-GAGTTTCTTTAT----ATT-ATTG--AATGTCCT--GAAATGAAT---AATGTACG--AAAGCAAAG-CCTGAAAAGTTA-TTTTTTGAACAA-TGT-TAATGT-CATTAAATTAAAAAAAAAA-CCAACTACTCCAGTGT-AAA-----------TTTAGAAA----------------TTAGAGGTAT-AAATCAAAGAATTTGTCCTCCGACATAACCATATGTGCAATGTTAATGGCAATAATTTATTAATTTAC--------T-GTAATGATTTTCAATGA-TGTTAGAGACCT
gi|4 : AAATATTAC---------------TTCTTAATGTGTGTGTTTTA--ATG---ACT-AT-G--AATGTCTT--GAAATGAAT---AATGTCCG--AAAGCAATG-CTTAAAAAGTTACTTCTT-GAAGAA-TAC-TAATATA-ATTAAATT-----TAAAAAC---CTTTTGCA-----AAA-GTGTCAAAACCTTAAGAAGTTTGTGTTCGTTAATT-AGAAGTATAAA-TCAAAGAATTTATCCTCCGACATAACCATATGTG--AT---------AATAATTTGTTGATCTACTACCTTTTT-GTAAC-ATCCTGTATAA-TGATGAAAACCCTTTTCCGTGTCAT--ATTACCTTGT---CATGA---A-CT-------TTTTATATCGTATGTATT------------GTGTA-TTTACATGCAT--TCTCTGT-ACCATTTATTTGGTTTATGAGAAATAAA-T--TAAC---TTGAA-CTTGA
gi|5 : gaaaactgtggtattCAATTTTA-ACAGCAATGGAACTCCAAAGTTCATACGTCTCCAAACGG-------TATCGTTTATATATTTTAGATGAATTTGTCTTTGAAA---AT-CATTTACACACTTTTC-ATTGACCTAATAGG--------ATTTAGATTTAGAACTGGAAATCACAAGCT-TCCA-ATAGAAA-GTGGTATATGGGCAACGATAAACAGAA-----AG------------------------------TGGTGATTAGTTTTCATTATCCACATTAAT-GGAAATGTCCT--GAAATGAATATCAATGTACGAAAAAGCAATG-TTTGAAAACTTATTAATCTGAACAACTAT-TAATGTTCAATTAATA-----TAAAA-
gi|6 : gtaatTTTTCCAGTGC-AAAAGTGTCAAAACTTTAAGAAGTTTGTGTTTGTTAATT-AGA-GTATAAA-TCAAAGAATTTGTCCTCCGACATAGCCATATGTG--AT---------AATAATCTGTTGATTTACCAC-TATTTTGTAAC-ATCCTGTATAA-TGATGAATACCTTTTTCCTTGTCAT--ATTACCTTGT---CAT-G---AGCTATTTTATTTTTA------------TATCATATATATTGTGTA-TTTACATGCAT--TCTCTGT-ACCATTCATTTGGTTTATAAGAAATAAA-T--GAAC---TTGAA-CTaaaacaaaatactccgtggtaatgtcaaaacatgtata
gi|7 : ATGTCCT--GAAATGAAT---AATGTACG---AAGCAA-G-CTTGAAAA-TTA---TTTTGAACAA-TATGGAATG-GCATTAAATT-----TAAAA-T---AAATT-CAGTGTAAAA-GTGTCAAAACTTTTT--AGTTTGTGTTTCTTAA-TTAGAAGTATAAAA
gi|8 : TCATGAATTACTATGTATTCAT-ACATA-TT-------GTTTA------------T---------------TAGTTTACATGTATGTTCTCTAT-ACCAATTATTTGGTCTATGAGAAATAAATT--GAAC---TTGAAGCTTc
gi|9 : cctcctcgtaatattattA------------T------------ATATT-TTTACA-GCAT--TCTCTGT-ACCA-TTATTTGG-TTAAGAG-AATAAA-TTGAAACTTATTGGA-CTTG