lowQualScore : 11 222222222 44444 1 1 1 3333333333333333333333333 11 1 11 1 1 22222222 11 1111 111111 11111 2 11 111111 111 333333333333333 1 11111 1111 2222222 111 22 4444444 66666666666666666666666666 1 1111111 6666666666666 1111 222 55555555555555555555 11111 222 11 7777777777777777777777777777777777777777777777777777777777777 11 11111111 1111 111 22222
lowQualScore : 99 000000000 0 6 00000 6 6 5 5 0 66 9999999999999999999999999 3 33 888 0 5 11 0 1 5 5 6 77777777 44 1 1 6 7777 3 4 6 999999 6 44444 6 6 6 6 88 7 77 77 5 55 5 5 99 5 5 111111 5 77 5 5 5 999 2 5 77 5 444444444444444 888 5 8 0 5 11111 0 5 6 2 4 66 2222 66 0 7777777 4 55 4 666 2 777 77 3 3 1111111 77777777777777777777777777 4 5 6666666 3333333333333 5 8 9999 4 000 0 0 22222222222222222222 1 66666 6 666 44 0 2222222222222222222222222222222222222222222222222222222222222 11 33333333 0000 5 5 333 33333 99 3
lowQualScore : .. ......... . . ..... . . . . . .. ......................... . .. ... . . .. . . . . . ........ .. . . . .... . . . ...... . ..... . . . . .. . .. .. . .. . . .. . . ...... . .. . . . ... . . .. . ............... ... . . . . ..... . . . . . .. .... .. . ....... . .. . ... . ... .. . . ....... .......................... . . ....... ............. . . .... . ... . . .................... . ..... . ... .. . ............................................................. .. ........ .... . . ... ..... .. .
lowQualScore : 88 000000000 8 4 11111 0 6 0 5 0 99 1111111111111111111111111 1 88 888 0 0 77 1 4 0 0 0 22222222 22 7 0 0 0000 2 6 7 222222 7 33333 7 7 7 7 33 3 99 99 7 77 7 7 33 7 7 999999 7 77 0 0 0 000 2 0 00 0 888888888888888 888 0 4 0 0 00000 4 7 7 8 4 11 9999 33 1 3333333 0 55 0 888 3 000 11 9 0 6666666 88888888888888888888888888 4 0 2222222 4444444444444 0 8 0000 4 999 7 7 11111111111111111111 0 33333 7 777 88 9 1111111111111111111111111111111111111111111111111111111111111 99 44444444 4444 0 0 888 11111 11 9
consensus : ATACATAATGTCA---------ATTTTNTACAT--ATATTTAGATGT-CTTGTTTCTTG-TA--TA-T--GTAT---GTG-T-AA------CTCGGCAT--TG---T-AGC-ATGGATGTTTTGTC-AGAATATATTGTAAACAATATTCAGTGTTGCATGAATTTATTTCATCACT-----ATCAGA-TCAGAAGTGTATTATCGTAAGGAGACTTT----AACGAATACTTTAAA-TGTTAGATTTC------GTCGTTATTCTGT-AAAGA-----CAT-CT-TTACCGGAAA-GTA-TTATAAACGCAGG--A--A-TACTTTTCCGTAAAGA-AT-ACTTTAT--AAT-GAT-GACATT---AAAAT-CTTTCATTCTGAA-GAG-AT-CATTC--TATGCTCTTTACA-TAA-TT-A-----TA---CA-A-GAT---ATC-AACAGT-GAG-AAAAC----TAATTG-TTTACATTCCATAAAG-AAAGTCGAGGTTTATC-TTAAAGTTT--AG--TCAGAAAACCACC-AAAAACAGATAGAACAT-C-----GG-TGAA--A-AAAAAA-TCAGAA---AGCAAA-GCGTGTTTCTTTTAGATCG---TCG-TTTGTAAT----AGAATTC--TTAAANAAGT-G-TTT-ATGCAGGA-------ACTGTC----ATAT-AAT-T-CAGAAGTTGTATTGCTTGATA---A-CAATGTGTGTCATGTCAACAT--------------------ACGCTTTATCG----AATCGT-C--TTTTCGGG-TCACCTGTGTAATCTCGGGTG-AGGCA-TT-------------A-CAATT-GTCTTCGTCCTGTGCCCTTGACCGGA--TTTTC-A-A-A-GAATC--G-A-TAGG-GTT---TTC-----ACTTTAGGTAG-CCCACTACACCCAG
Reference ( gi|4 ) : ATACATTATGTCA---------ATTTTATACATAGATATTCAGAAGT-CTTGTTTCTTG-TA--TA-T--GT-T---GTG-T-AA------CTCGGCAT--TG---T-AGC-ATGAATATTTTGTC-AGAATATATTGTAAACAAGATTTAGTGTTGCATGGATTTATTTCATCGCT-----ATCAGG-TCAGAAGTGTATTATCGTAAGGGGACTTT----AACGAATGCTTTAAA-TGTTAGATTTC------GTCGTTATTCTGT-AAAGA-----CAT-CT-TT-CCGGAAA-GTA-TTATAAACGCAGG--A--A-TACTTTTCCGTAAAGA-AT-ACTTTAT--AAT-GAT-GACATT---AAAAT-CTTTCATTCCGAA-GAG-AT-CATTC--CATGCTCTTTACA-TAA-TT-A-----CA---C--A-GAT---ATC-AACAGT-GAG-AAAAC----TAATTG-TTTACATTCCATAAAG-AAAGTCAAGATTTATC-TTAAAGTTT--AG--TAAGAAAACCACC-AAAAACAGATAGAACAT-C-----GG-TGAA--A-AAAAAT-TCAGAA---AGCAAAAGTGTGTTTCTTTTAGATTG---TTGTTTTGTAAT----A-AATTCCTTTAAAAAAACCG-TTT-ATCCAGGA-------ACTGTC----A----AA--T-CAGAAGTTCTATTGCTTGATT---A-CAATGTGTGTCATGTCAACAT--------------------ACGTTTTATCG----AATCGT-C--TTTTCAGG-GCACCTGTGTAAAGTATGATG-AGGCA-TT-------------G-CAATT-GTCTTCGTCATGTGTCGT----CGGA--TTTTT-A-A-A-GAATC--A-A-TAGG-GTT---TTC-----ACTTTAGATAA-CCCATTACACCCAG
gi|3 : ATATATAATGTCA---------ATTATTTACAT---TATTTAGATGT-CTTGTT-CTTG-TA--TA-T--ACAT---GTA-T-AATGTAAACTCAGTAT--TG---T-AGC-ATGGATGTTTTGTC-AGAATATATTGTAAACAATATTTAGTGTTGCATGAGTTTATTTCATCACT-----ATCAGA-TCAGAAGTGTATTATCGTAAGGAGACTTT----AACGAATCCTTTAAA-TGTTAGATTTC------GTCGTGATTCTGT-AAAGA-----CAT-CTATA-CCAGAGA-GTA-TTATAAACGCAGG--A--A-TACTTTTCCGTTAAGA-AT-ACTTTAT--AAT-GAT-GACACT---AAAAT-CTTTCATTCTGAA-GAG-AT-CATTC--TATTCTCTTTACA-T-A-TT-G-----TA---C--ATGAT---GTC-AACTGT-GAG-AAAAC----TAATTG-TTTA
gi|5 : ttgttaattcttcagataatccagacggagatgagaggatcacagaaggttcaagtcctatggaagatttggaacctgaaacaaatctacagaccagtgaaaagtccgagtatgaagaatatagtgaggaactacagtnnnnnncaccctgttgtaaggggtgtgtgtgtaaaaggcaatacgaagaaanaagtagtgagaaactgtccagtgatgagagcaacgctgaagaaaacggagaaatgcttgattctgtaggaggatgtaaatgaatcctgttgtcagtggtgcttccgaattttccagtgttaagatttaaaagtggaatgtgatttagatattgaccaggacgttcctcagtcagagtatgtttagctatgaagcgctgattttgaaactcgtgcagtcnnnnnnngaagaatttttgaaatgaaaaaaatatgatggaatcacattatcaatgnctatggtgaaaaacagatttacataagtATGCATAATGTCA---------ATTTTGTA----GATGCTTAGATGTGCGT-TTTATTG-CA--TA-T--TT-C---ATG-TGAA------CTTTGTCT--TG---T-TAT-ATGAATCTTTTGCC-AGAATATATTGTGAACAATATTCAGTGTTGCATGAATTTATTTCATCACTATCAGATCAGA-TCAGAAGTGTATCAT-GTAAGGAGACTTT----AATGAATACTTTAAA-TGTTAGATGTT------GTCATTATTCTGTAAAAGA-----CAT-CT-TTACCGGAAA-GTA-TAATAAACTGAGA--A--A-TACTTTTCCGTAAAGA-AT-ACTTTAA--AAT-GAT-GACTTTTTAAAAAT-CTTTCATTTTAAA-GAG-AT-CATTG--TATGCTCATCCTC-TAACCT-ACTCCTCA---C--T-GAA---AAC-GACAAT--AG-AAAACATGATAATTT-TTT
gi|17 : cagtgaagagatcaagtctgaagaaaagcaatctagagattcttgtaggagtgtgaaaaaatttagtctgaggaagatagtgaggaatctgacccagataacattaggacattcctcaatcaaaatcagaatctgaccctggtaacattaggacattcctcaatcaaaatcagcatgctgccatgaagtgctgcaatcggttatggtgaaaaatatatttatactagtatgttATACATAATGTCAATATGATCTATTTTATACATAGATATTTAGAAGT-CTTGTTTCTTG-TA--TA-T--AT-T---GTGTT-AA------CTCGGCAT--TG---T-AGC-ATGAATATTTTGTC-AGAATATATTGTAAACAGCATTCAGTGTTGCATGAATTTATTTCATCTCT-----CTCAGA-TCAGAAGTATATTATTGTAAGG
gi|1 : gcactggttttgaaactctcgtgcaatcagttatggtgaaaaacagatttatataagtTACA--ATGTCG---------ATTTTG-ACAT---TATTTAGA-GT-CTTGTT-CTTG-TAAGCA-T--GT-T---------AA------CTCAGCAT--TGCAGT-AGCGATGAATATTT-GTC-AGAATATACTATAAAC--TATTCAGTGTTGCATGAATT-ATTTCTCCAC------ATCAGAATCAGAGATATAT---CGTAAAGAGACTTTTTTTAA--AATACTTTAAA-TGTTAAATTTC------GTCGTTATTATGT-AAAGACATATCAT-CT-TTACCGGAAA-GTA--TAT-AACGCA-G--A--A-T-CTTTACCATAAAGA-AT-ACTTTATA-AAT-GAT--ACAT-----AAAT-CTTTCATTCTAAA-AAGAATACACTCTGTATGCTC-TTACAGTAA-TTGA-----TA---CA-A-GAT---ATC-AAC-GT-GA--AGAAC-----AA-TG-TTCACATTCCTTAACG-AAAGTCAAG-TTTATC-TTAAAG-TT--AGT-TCAGAAAACCACC-AAAAAC-----GAACAT-A-----GGCTGAA--A-AAAAAA-T-AGAA---AGCAAACATG----TCCTTTAGATCGAGCTTG---TGTAATTGAAA-GAATC---TAAACAAGT---TTT-ATGC-GGA-------A-----------------------------TATT-CTTGGATAAAA-CAAT-TGT-TCATGTCAACAT--------------------AC-TTT--TCA----AATCGTGC-----GCAGG-TCACCTG-GTAACCTG-GGTGAAGGCA-TTACAAATGGACGAAG-CAATT-GTCTTCGGACTGTGTCTT----CGGA--TTTTC-A-A----AATC--A-AGTCGG-GTTA--TTCACATTACTTTAGGTAG-CTCACTACACCCAG
gi|27 : gtaaacgagtgaagagtccgagtacaaagaaaacggtgtgaaactgaggtctggaaggggaaaccacagagaatgtttaattctggaaaatgtagaggatttcgctgaatcctgttcgtctgtggtttctcggaatctatgtcaaatttaaaagtgaaatgaatcgatattgacgaaggaacgttcgtcagttcagttcaagaatgagaatgctaccatgagtatagcgcgctgatttgaaactctcgtgcaacgtcgattatggtgatcgaaaaatcagatttataaaagtcTGTCA---------ATTATTTACATT--TATTTAGATGT-CTTGTT-CTTGATA--TACT--GTATACAGTG-T-AAA-----CTCAGTATGCTG---TCAGC-ATGGA-GTTTTGTCGAGAA-ATATTGTAAACAATATTTAGTGTTGCA
gi|26 : atcatTGTCA---------ATTATTTACATT--TATTTAGATGT-CTTGTT-CTTGATA--TACT--GTATACAGTG-T-AAA-----CTCAGTATGCTG---TCAGC-ATGGA-GTTTTGTCGAGAA-ATATTGTAAACAATATTTAGTGTTGCAgaat
gi|2 : atcatA---------ATTTTATACATA----TTTGTATGT-CTTGTTTCTTG-TA--TA-T--AT-T---GTG-T----------TAGGCAT--TG---T-AGC-ATGGAAGTTTCGTC-AGAATATATTATAAACAATGTTCAGTGTTGCATGAATTTATTTCATC-----------------AGAAGTGTATTATCGTAAGAAGACTTT----AACGAATACTTTAAA-TGTTAGATTTC------ATCGTTATTTTGT-AAAGA-----CAT-CT-TTACCAGAAA-GTA-CTATAAACGCAGG--A--A-TACTTTTCCGTAAGAA-AT-ACTTTAT--AAT-GAT-GACATT---AAAAT-CTCTCATTTTAAA-GAG-AC-CTTTC--TATGCTCTTTACA-TAA-TT-A-----AA---CA-A-GAT---ATC-AACAGT-GGGAAAAAA----TAAATG-TTTACATTCGAAAAAG-GAAGTCGAAGTTTCTTGTTAAAAT--------TAAGAAAACCATC-AAAAgaat
gi|25 : cagtgaagaagtttaagtgtgaagaaaacatagagtgttaattctgtagaatttaggaggatgttcctgaatcctgtcatcagtgctgtcttcagagatttctagtgtccagatttaaatgttgaacaagaattaaatattttccaaaccaagcataggtgactttaatattacattaatgttttcaaatgttatagtgagaagtttacttacgtttctggaatctcaaacacggcgctaataataaaaaaatatataatttttgataatatgtttaatggcaataaacgatataagacctgcaattaggaaaaaaaagcgaggaatctgaccctgatgacaaggacactcctcagtcaaaccacaatgcttggccgtggagcatgctttaaactcttgtgcaatcgattttgatgaacaacataaccttataatatatatannnnnnnnnnnnnnnnnnnnnnnnnatgtacccacatattgttaataat---------ATTTTGTACA---A-ATTTAGATGT-CTTGTTTCTTG-TA--TA-TACAT-T---GTGTT-AA------CTCAGCAT--TG---T-AGC-A
gi|31 : tttaaactcttttgcaattgactatggtgaacagcagatttagtctcatttacctatatatatagatatttataatttTTGCATGAATGTATTTCATCACT-----ATCAGA-TCAGAAGGGTATTATCATAAGGAGACTTT----AACGAATGCTTTAAG-TGATAGATATC------GTCGTTATTCTGT-AAAGA-----C
gi|5 : CTTTAAAATGAAAGATTTTTAAAAAGTCATCATTTT---AAAG------TATTCT-TT-ACGGAAAAGTA-TT-T---CTCAGTTTATTA-TACTTTCCGGTAAAGATGT-CTTTTACAGAAT-AAT-GAC------AACAT-CTAACATT-TAAA-GTA-TT-CATTA--AAGTCTCCTTACA-TGA--T-A-----CACTTC--T-GATCTGATCTGATAGT-GAT-GAAAT----AAATT
gi|24 : cagtgaagagatcaagtctgaagaaaagcaatctagagattcttgtaggagtgtgaaaaaatttagtctgaggaagatagtgaggaatctgacccagataacattaggacattcctcaatcaaaatcagaatctgaccctggtaacattaggacattcctcaatcaaaatcagcatgctgccatgaagtgctgcaatcggttatggtgaaaaatatatttatactagtatgttatgcataatgtcaattttgtagatgcttagatgtgcgttttattgcatatttcatgtgaactttgtcttgttatatgaatcttttgccagaatatattgtgaacaatattcagtgttgcatgGA-----CAT-CT-TTACCAGAA--GTAATTATAAACGCAGG--A--AATA-TTTTCTGTAAAGA-AT-GCTT-AT--AAT-GAT-GACATT---AAAATACTTTC-TTCTGAA-GAG-AT-CATTC--TATTCTCTTTACA-TAT-TT-A-----TA---CAAA-GAT---GTC-AAC-GTGGAG-AAAAC----TAATTG-TTTAagatcattgtatgctcatcctctaacctactcctcactgaaaacgacaatagaaaacatgataatttttt
gi|18 : AACGCAGA--A--A-C---TTTCCGTAAAGA-ATTACTTTATT-AATAGATTGACACT---AAAAT-CTTTCATTCTGAAAGAG-AT-CATTCG-TATGCTCTTTACA-TAA-TG-A-----TA---C--AAGAT---ATC-AACAGTTGAG-AAAAC----TAATGGGTTTACATTCCATAAAGGAAAGTCAAGATTTAGC-TTAAAGTTT--AGCTCAGGAAAACCACC--AAAACAGACAGAACA
gi|23 : GAA-GAG-AT-CATTT--TATGCTCTTTACA-TAA-GT-A-----TA---C--AAGAT---ATC-AACGGT-AAG-AAAAC----TAATTG-CTTACATTCCATAAAG-AAAGTCAAGGTTTATC-TCAAAGTTT--AG--TCAGAAAACCACC--AAAACAGATAAAACAT-A-----GG-TGAA--A-AAAA---TCAGAA---
gi|9 : tCATTCCATAAAG-AAAATCAAGATTTATC-TTACAGTTT--AG--TCAGAAAACCACCAAAAAACAGATAGAACAT-C-----GG-TGAA--A-AAAAG--TCAGAA---AGCAAAAGTGTGTTTCTTTTAGATTG---TTG-TTTGTAAT----A-AAATTCTTT-AAAAAACCGTTTT-ATCCAGGA-------ACTGTC----A----AA--T-CAGAAGTTCTATTGCTTGTTT---A-CAATATG-GTCATGTCAACAT--------------------ACGTTTTATCA----AATCGT-CN-NNNNNNNN-NNNNNNNNNNNNNNNNNNNNN-NNNNN-NN-------------N-NNNNN-NNNNNNNNNNNNNNNNNN----NNGA--TTTTTCA-A-A-GAATC--A-A-TAGG-GTT---TTC-----ACTTTAGATAA-CCCATTACACCCA
gi|8 : AAG-AAAGTCGAGGTTTATC-TTGAAGTTT--AG--TCAGAAAACCACC-AAAAACAGATAGAACATACCAGTAGG-TGAA--ATAAAAAA-TCAGAA---ATCAAA--CGTGTTTCTCTTAGATGG---TCA-TTTGTAAT----AGAAATCC---AAAAAAGT---TTT-GTGCAGGA-------ACTGTT----ATAT-AAT-T-CAGAAGTTATATTGCTTGATA---A-CAATGT-TGACATGAACACAT--------------------ACGCTTTATCA----AATCGT-CN-NNNNNNNN-NNNNNNNNNNNNNNNNNNNNN-NNNNN-NN-------------N-NNNNN-NNNNNNNNNNNNNNNNNN----NNGAT-TTTTT-A-A-A-GAATC--G-A-TAAGTGTTTCATTT-----ACTTTAGATAG-CCCACTACACCCA
gi|12 : AAAANTTATC-TCAAAGTTT--AG--TCAGAAAACCACC-AAGAAGAG-------AT-T-----GG-TGAA--A-AAAAATATCAAAG---AGCAAA--CGTGTTTCTTTTAGATCG----AGGTTTGTAAT----AGAAT---TTTAAACA---CGTTTT-ATGCAGGA-------ACTGCC----ATAT-AAT-T-CAGAAGTTCTATTGCTTGATA---A-CAATGT-TGTCATGAACACAT--------------------ACGCTTTATCG----AATCGT-CNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNN-NNNNN-NN-------------N-NNNNN-NNNNNNNNNNNNNNNNNN----NGAG--TTTTC-A-A-A-GAATCTGATG-TATG-GTT---TTC-----ACTTTAGATAG-CCCACTACACCCA
gi|22 : cagAGATTTATC-TTAAAGTTT--AG--TCAGAAAACCACC-AAAAATAGATAGAACAT-A-----GG-TGAA--A-AAAATA-TCAAAG---AGCAAA--CGTGTTTCTTTTAG-TTC---AAGATTTGTAAT----AGAATTC---TAAACAA---G-TTTCATGCAGGA-------ACTGTCCTATA----AT--T-CAGAAGTCGTTTTGCTTGATA---C-CAATt
gi|11 : TT-TTGAAGTTTTTAG--TCAGAAAACCACC-AAAAACAGATAGAACAT-CAGT--GA-TGAA--A-AAAAAT-CAAGAATTTAGCAAACGTGT-TTTCTTTTAGA-TG---TCAATTTGT-AT----A-AATTC--TTAAAACA--CGTTTT-AT-GAGGA-------ACTGTC----ATATTAATTT-CAGAAGTTATATTGCTTGATA---AGCAATGT-TGACAT-TGAACACG-------------------ACGCTTTATCG----AATCGT-C--TTTTCAGGTCCACCAGTGTAAA--CTGGTG-AGGCATTT-------------A-CAATT-GGCTCCGTCCTGTGTAGT----CGGAATTTTTC-A-G-ATGAATC--G-G-TAGG-GGT---TTCACTT-ACTTTAGATAGCCCCACTACACC
gi|34 : T-T-----GG-TGAATAA-AAAAAA-TCATAA---AGCAAA--CGTGTTTCTTTTAGATCG---TCG-TTTATAAT----AGAATTC---TAAAAAAGT---TTT-ATGCAGG
gi|28 : -----GG-TGAA--A-ATAAAT--CAAAA---AGCAA--GCGTGTTTCTTTTAGATCG---TCG-TTTGTAAT----ATAATTC--TTAAAGAAGT---TTT-ATGCAGGG-------ACTGTC----ATAT-AAT-T-CAGAAGTCGTTTTGCTTGATA---A-CAAT
gi|13 : taG-TGAA--A-GAAAGA-TCA-AA---AGCAAAGATGT-----TTCTA------------TTTGAAAT----AGAATTC---TAAACAAGT---TTT-ATGCAAGACGGGAAAAATGTC----ATAT-AA--TTCAGAAGCTGTATTGCTTGATA---A-CAATGTGT-TCATGTCAACATGGAATACATGTATAAAATATACATTTTATCCCCCCAATCGT-C--TTTTCGGG-TCACTTGTGTAATTTCGGGTG-AGGTT-TA-------------A-CAATTGGTCTTGGTCCTGTGCCCTTGACCGGA--TTTTT-ACA-C-AAATC--A-A-AAGC-GTT---CTC-----ATTTTAGGTAG-TCCACTACACCAAG
gi|36 : TGATA---A-CAATGTGT-TCATTTCAACAT--------------------
gi|30 : GG-TCATCTGTGTAATCTCGGGTG-AGG---TT-------------AATAATT-G-----GTCA-ATGCCCTTGACCGAA--TTTTC-C-A-C-AAATC--G-A-TAGC-GTT---GTC-----ACTTTAGGTAG-CCAACGACAggactacatgtgtaaaatgta
gi|32 : gGG-TCATCTGTGTAATCTCGGGTG-ATG---TT-------------AACAATT-G-----GTC-TGTGCCCTTGACCGGA--TTTTC-C-ACA-AAAT---G-A-TAGC-GTT---CTC-----ACTTTAGGTAG-CCaca
13 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): GAAGAAACCAGTGAAGAGTCCGAGTCGTATGAGTTTTAGTCTGAAGAAACCAGTGAAGACCTGGAGTCTGATGAAAACAGTGAATGCCTGACCAGTGAAGAGTTTAAGTCTGAAGAAAACATAGAGTGTTAATTCTGTAGAATTGTAAGGGGATGTTCCTGAATCCTGTCGTCAGTGGTGTCCCAGAATTTTCTAGTGTGACAGTCAAAATTTAAAAGTGGAATTAGAATTAGATATTTTTCAAACTAAGCATAGGTGACTTTAACCTTACAAAATGTTTTCAAATGTTATAGTGACGCAGTTTACTTTTCGTTTCTTCTTTGAACACGGCTGGAAATCAATAAAAATATATGTTAGAAAAAGATTAATAAGGACCTAAAATGTGAGGGGGGGGAAGAGGAATCTGACCCTGATGACAAGGACACTCCTCAGTCAAAATCAGAATGCTACCGTGAAGCGGTGCCCTTTAAACTCTTGTGCAATGAGTTATG
Unaligned ( gi|7 ): AATAAAAACAAAATATATTTTTCATATAGTACCTCTTTTATTTGACAGATTGATCACCTTTCCAGTTTTGTTAACCCTTCAGATGATCCAAACGGAGATTATAGGATGAAAAAAAGTTTCAAACTCTGAGAAAGATCTGGAACCTGGAACAGATCTAGAGATAAGTGAAGAGTCTGAGTATGAAGAATATTGTGAGGAACTGCAGTCTGATGAAAGTAGTGAGGAGCTGCAGTCTGATGAAAACAGTGAAAAGATGAGATATGATTCCTTGGAAAGTGATGAGAGGAATACTGAAGACAACAGAGTGTTAATTCTGGAGAATCGTAGGAGGATGTCCCAGAATCCTGTTGTCAACGCTGTCCCAGAATTTGATTTAAAATTGAATCGGGAATTAGATAGTGACAATGAAATTCGTCAGTCAAAATGAGAATGCTGCCATAAAGCGCTGATTTTAGAAACTCTCGTACAG
Unaligned ( gi|10 ): CCTGAAATCCTGTCGTCAGTGCATGTCTTCCAGAATCTTTGTCGTGACCGATCAAAGGTGTCAAGATTGTGAAAAAGTGGAATAAGAAATTAGAGTTTATTATTGCTGAAACTAAACAATTAGGTGACTTTAATCTTACCAAAATTTGTTTTTCAACGTCTCAATCTAAAACGTTGGCGTCTAGTAGTGGCACCCAGCTACGTTTTCTATCTGGAACCATCATCAGAACACGGCCTGCAAATATCAATAAAAAAAATTTAATTGTCTTTTTTACACAAGATCAAGTTAAGAGTCCTAACAAAGTAGAAGGGAAGACGAAAGGAATCTGACCCT
Unaligned ( gi|14 ): TATACCTGTTTTATTCTAGTGATTAATCACCTTTCTTGTTTTGTCAATCCTTCAGATAATCCAGACGGAAATGAGAGGATCAAAGAAGCTTCTACATGTAGTTATGAAGAAGTTCAGGAATCTGGAAGAGGACTGGAAACCAGTGAAGAGTCTGAGTATGAAGAAACCAGTGAAGACCTGGAGTCTGAAAAAACCAGTGAAAAGTCCGAGTCCTATGAGTCTGAGTCTGAAGAAACCCATGAAAACCTGAAGTGTGATGAAAATAGTGAA
Unaligned ( gi|15 ): CATTTTTGTTAATTCTTCAGATAAATCCAGGAGGAAGATGAAGCCTGAGGATACAGAAAACAGAAGGTTCAAAAGTCCTGAATTGGAAGATTTGGACCTTTTGATATGAAGAAAAAATCTACCAGAACCAGTCGAAAAAGTAAAGGACGACCGTTAGTATTGAAGAATATTTATTAAGTGAGGAACTAACAGTCTGATTTGAAGTAGTGGAGAATGTCCGTGATGAGGCAACTGCTTGAAGAAAACGGAGAAAGATA
Unaligned ( gi|16 ): CATTTTTGTTAATTCTTCAGATAAATCCAGGAGGAAGATGAAGCCTGAGGATACAGAAAACAGAAGGTTCAAAAGTCCTGAATTGGAAGATTTGGACCTTTTGATATGAAGAAAAAATCTACCAGAACCAGTCGAAAAAGTAAAGGACGACCGTTAGTATTGAAGAATATTTATTAAGTGAGGAACTAACAGTCTGATTTGAAGTAGTGGAGAATGTCCGTGATGAGGCAACTGCTTGAAGAAAACGGAGAAAGATA
Unaligned ( gi|19 ): TATATGTTTTTACAAGATTAGTAAGGACCAAAAATGTGACGGGAAAAACAAGGATTCTGACCTTGATGACAAGGACACTCCTCAATCAAAATCAGAATGCTGCTGTGAAGCGGTACGCTTTAATCTCTTGTGCAATCGATTTTGATAAACAACATATTTACCTATACATATATTATTAATAATAATTTTATACATA
Unaligned ( gi|20 ): AATTTGAGTGATTTGATCACCTTGTTTTCGTTAATCCGCAGGATTTAACCAGATGGACAATTGGGACACGGCGAGGAGAATCACAGAAGCTTCTAGTTATGAGGAAGTTCAGGAATCTGGAACAGGATCTGGAAAGCACTGAAAGAGTCTTGAGTCTGAAGAAACCAGTGAAGAGTCCGAT
Unaligned ( gi|21 ): TGTTTTATTTGAGTGATTGATCACCTTCCTTATTTTGTTAATCCTAATTCAGATAATCCAGACGGAGGTGTGCAGATCACAGAAGCTTCTAGTTATGAGGAAGTTCAGGAATCTGGAGCAGAACTGGAAACCATTGAAGAGTCCGAGTATTAAGAAACCAGTGAAGACCTGGAGTCTGA
Unaligned ( gi|29 ): GATGAATACAATGATGATTCCCGAGTCCGAGTCCGAGTCTGAAGAAACCCTTGAAGACTTTGAGTCTGATGAACACAGTGATTAGTCCGAGTCCGAAGAGTCCGAGTATGAAGA
Unaligned ( gi|33 ): GAAGCGCTGCTCTTTTAACTTTTGTGCAATTGATTTTGATGAACAACATATTCACCTATATATATGCTGTGCATTTTATACATAT
Unaligned ( gi|35 ): GTGGAAAAAGGATCAGAAAGCAAAGATGTTTCTATTAGGTAGAGGTTTGAAATAGAATTATAAAC
Unaligned ( gi|37 ): TTAATAAAAACGAACTATATTTTCATACACATAGCTGTACTATATA
Alignments
lowQualScore : 111111111 222 1 22222222222 222222 11 1 111111 1111 11111 1 111 11 1 1111111 11 111111 11111 33 1111111 111 44444444444444444444 11111 222 3333333333333333333 11111 11 11 111 22222
lowQualScore : 777777777 1 111 1 2 4 2 8 44444444444 8 111111 1 22 777 8 4 6 0 3 1 555555 5 0 4444 1 6 44444 88 5 55 5 1 5 5 000 5 5 5 5 11 5 5 5 0 5 5 5 77 5 6 4 0 55 8 4 0 4 6666666 3 555 44 3 3 3 0 555 7 99 3 4 333333 7777 2 88888 1 4 44 4444444 888 66 1 4 444 55555555555555555555 22222 5 666 4 1 7 4 4444444444444444444 4 00000 4 2 1 8888 55 4 4 66 4 00 4 222 00000 4
lowQualScore : ......... . ... . . . . . ........... . ...... . .. ... . . . . . . ...... . . .... . . ..... .. . .. . . . . ... . . . . .. . . . . . . . .. . . . . .. . . . . ....... . ... .. . . . . ... . .. . . ...... .... . ..... . . .. ....... ... .. . . ... .................... ..... . ... . . . . ................... . ..... . . . .... .. . . .. . .. . ... ..... .
lowQualScore : 888888888 0 666 9 2 4 8 9 00000000000 9 777777 7 22 888 9 4 5 0 2 9 777777 7 1 2222 0 7 33333 33 7 77 7 4 7 7 000 7 0 0 0 99 7 7 7 9 7 7 7 44 7 3 0 8 55 0 0 8 0 3333333 3 000 66 3 3 3 2 888 3 33 6 3 555555 7777 8 11111 0 0 00 4444444 000 33 9 0 666 66666666666666666666 66666 7 444 4 8 6 4 4444444444444444444 4 11111 8 8 0 6666 00 4 4 22 4 66 4 222 66666 4
consensus : ATACATAATGTCAAT---------TTTNTACATA--TATTTAGATGT-CTTGTTTCTTG-TATA-TGT-A-T---GTG-TAA------CTCGGCAT--TG---T-AGC-ATGGATGTTTTGTC-AGAATATATTGTAAACAATATTCAGTGTTGCATGAATTTATTTCATCACT-----ATCAGA-TCAGAAGTGTATTATCGTAAGGAGACTTT----AACGAATACTTTAAATGTTAGATTTCGTCGTTATTCTGT-AAAGA-----CATCTTTACCGGAAAGTA-TTATAAACGCAGGAA-TACTTTTCCGTAAAGAAT-ACTTTAT-AAT-GAT-GACATT---AAAAT-CTTTCATTCTGAA-GAG-AT-CATTC--TATGCTCTTTACA-TAATT-ATAC-AAGATATCAACAG-T-GAG-AAAACTAAT-TGTTTACATTCCATAAA-GAAAGTCGAGGTTTATC-TTAAAGTTT--AG-TCA-GAAAACCACCAAAA-ACAGATAGAACAT-C-----GG-TGA--A--A-AAAAA-ATC-AGAA---AGC-AAAGCGTG-TTTCTTTTAGATCG-TC-G-TTTGTAAT----AGAATTC--TT-AAANAAG-T--TTTATGCAGGA-------ACTGTCATA-TAA-TTCAGAAGTTGTATTGCTTGATAA-CAATGTGTGTCATGTCAACAT--------------------ACGCTTTATCG----AATCGT-CTTTTCGGGT-CACCTGTGTAANCTCGGGTG-AGGCA-TTA-------------CAATT-GTCTTCGTCCTGTGCCCTTGACCGGA--TTTT-CA-AA-GAATC-GA--TAGG-GTT---TTC-----ACTTTAGGTAG-CCCACTACACCCAG
Reference ( family-3002 ) : ATACATAATGTCAAT---------TTTNTACATA--TATTTAGATGT-CTTGTTTCTTG-TATA-TGT-A-T---GTG-TAA------CTCGGCAT--TG---T-AGC-ATGGATGTTTTGTC-AGAATATATTGTAAACAATATTCAGTGTTGCATGAATTTATTTCATCACT-----ATCAGA-TCAGAAGTGTATTATCGTAAGGAGACTTT----AACGAATACTTTAAATGTTAGATTTCGTCGTTATTCTGT-AAAGA-----CATCTTTACCGGAAAGTA-TTATAAACGCAGGAA-TACTTTTCCGTAAAGAAT-ACTTTAT-AAT-GAT-GACATT---AAAAT-CTTTCATTCTGAA-GAG-AT-CATTC--TATGCTCTTTACA-TAATT-ATAC-AAGATATCAACAG-T-GAG-AAAACTAAT-TGTTTACATTCCATAAA-GAAAGTCGAGGTTTATC-TTAAAGTTT--AG-TCA-GAAAACCACCAAAA-ACAGATAGAACAT-C-----GG-TGA--A--A-AAAAA-ATC-AGAA---AGC-AAAGCGTG-TTTCTTTTAGATCG-TC-G-TTTGTAAT----AGAATTC--TT-AAANAAG-TG-TTTATGCAGGA-------ACTGTCATA-TAA-TTCAGAAGTTGTATTGCTTGATAA-CAATGTGTGTCATGTCAACAT--------------------ACGCTTTATCG----AATCGT-CTTTTCGGGT-CACCTGTGTAATCTCGGGTG-AGGCA-TTA-------------CAATT-GTCTTCGTCCTGTGCCCTTGACCGGA--TTTT-CA-AA-GAATC-GA--TAGG-GTT---TTC-----ACTTTAGGTAG-CCCACTACACCCAG
gi|1 : ACAATGTCGAT---------TTTG-ACAT---TATTTAGA-GT-CTTGTT-CTTG-TA-A--GC-A-T---GT--TAA------CTCAGCAT--TGCAGT-AGCGATGAATATTT-GTC-AGAATATACTATAAAC--TATTCAGTGTTGCATGAATT-ATTTCTCCAC------ATCAGAATCAGAGATATAT---CGTAAAGAGACTTTTTTTAA--AATACTTTAAATGTTAAATTTCGTCGTTATTATGT-AAAGACATATCATCTTTACCGGAAAGTA--TAT-AACGCA-GAA-T-CTTTACCATAAAGAAT-ACTTTATAAAT-GAT--ACAT-----AAAT-CTTTCATTCTAAA-AAGAATACACTCTGTATGCTC-TTACAGTAATTGATAC-AAGATATCAAC-G-T-GA--AGAAC-AA--TGTTCACATTCCTTAAC-GAAAGTC-AAGTTTATC-TTAAAG-TT--AGTTCA-GAAAACCACCAAAA-AC-----GAACAT-A-----GGCTGA--A--A-AAAAA-AT--AGAA---AGC-AAA-CATG---TCCTTTAGATCGAGC-T-TGTGTAATTGAAAGAAT----CT-AAACAAG-T--TTTATGC-GGA-------AT----------A-TTC-----TTGGAT------AAAA-CAAT-TGT-TCATGTCAACAT--------------------A--CTTT-TCA----AATCGTGC---GCAGGT-CACCTG-GTAACCT-GGGTGAAGGCA-TTACAAATGGACGAAGCAATT-GTCTTCGGACTGTGTCTT----CGGA--TTTT-CA-A---AATC-AAG-TCGG-GTTA--TTCACATTACTTTAGGTAG-CTCACTACACCCAG
gi|11 : gtaaacgagtgaagagtccgagtacaaagaaaacggtgtgaaactgaggtctggaaggggaaaccacagagaatgtttaattctggaaaatgtagaggatttcgctgaatcctgttcgtctgtggtttctcggaatctatgtcaaatttaaaagtgaaatgaatcgatattgacgaaggaacgttcgtcagttcagttcaagaatgagaatgctaccatgagtatagcgcgctgatttgaaactctcgtgcaacgtcgattatggtgatcgaaaaatcagatttataaaagtctTT-TTGAAGTTTTTAG-TCA-GAAAACCACCAAAA-ACAGATAGAACAT-C-----AG-TGATGA--A-AAAAA-ATCAAGAATTTAGC-AAA-CGTGTTTTCTTTTAGAT-G-TCAA-TTTGT-AT----A-AATTC--TTAAAACACG-T--TTTATG-AGGA-------ACTGTCATATTAATTTCAGAAGTTATATTGCTTGATAAGCAATGT-TGACAT-TGAACACG-------------------ACGCTTTATCG----AATCGT-CTTTTCAGGTCCACCAGTGTAAACT--GGTG-AGGCATTTA-------------CAATT-GGCTCCGTCCTGTG----TAGTCGGAATTTTT-CA-GATGAATC-GG--TAGG-GGT---TTCACTT-ACTTTAGATAGCCCCACTACACC
gi|12 : TTATC-TCAAAGTTT--AG-TCA-GAAAACCACCAAGA-AGAGAT--------T-----GG-TGA--A--A-AAAAATATC-AAAG---AGC-AAA-CGTG-TTTCTTTTAGATCG-AG-G-TTTGTAAT----AGAATT---TT-AAACACG-T--TTTATGCAGGA-------ACTGCCATA-TAA-TTCAGAAGTTCTATTGCTTGATAA-CAATGT-TGTCATGAACACAT--------------------ACGCTTTATCG----AATCGT-C--NNNNNNN-NNNNNNNNNNNNNNNNNNNN-NNNNN-NNN-------------NNNNN-NNNNNNNNNNNNNNNNNNNNNNNGAG--TTTT-CA-AA-GAATCTGATGTATG-GTT---TTC-----ACTTTAGATAG-CCCACTACACCCA
gi|13 : cagaaaanG-TGA--A--A-GAAAG-ATC-A-AA---AGC-AAAG-ATG-TTTCT-------------A-TTTGAAAT----AGAATTC--T--AAACAAG-T--TTTATGCAAGACGGGAAAAATGTCATA-TAA-TTCAGAAGCTGTATTGCTTGATAA-CAATGTGT-TCATGTCAACATGGAATACATGTATAAAATATACATTTTATCCCCCCAATCGT-CTTTTCGGGT-CACTTGTGTAATTTCGGGTG-AGGTT-TAA-------------CAATTGGTCTTGGTCCTGTGCCCTTGACCGGA--TTTT-TACAC-AAATC-AA--AAGC-GTT---CTC-----ATTTTAGGTAG-TCCACTACACCAAGt
gi|17 : ATACATAATGTCAATATGATCTATTTTATACATAGATATTTAGAAGT-CTTGTTTCTTG-TATA-TAT---T---GTGTTAA------CTCGGCAT--TG---T-AGC-ATGAATATTTTGTC-AGAATATATTGTAAACAGCATTCAGTGTTGCATGAATTTATTTCATCTCT-----CTCAGA-TCAGAAGTATATTATTGTAAGG
gi|18 : gcactggttttgaaactctcgtgcaatcagttatggtgaaaaacagatttatataagtAACGCAGAAA-C---TTTCCGTAAAGAATTACTTTATTAATAGATTGACACT---AAAAT-CTTTCATTCTGAAAGAG-AT-CATTCG-TATGCTCTTTACA-TAATG-ATAC-AAGATATCAACAGTT-GAG-AAAACTAATGGGTTTACATTCCATAAAGGAAAGTCAAGATTTAGC-TTAAAGTTT--AGCTCAGGAAAACCACC-AAA-ACAGACAGAACA
gi|2 : ATAAT---AAT---------TTTATACATA--T--TTGTATGT-CTTGTTTCTTG-TATA-TAT---T---GTG-T---------TAGGCAT--TG---T-AGC-ATGGAAGTTTCGTC-AGAATATATTATAAACAATGTTCAGTGTTGCATGAATTTATTTCATCA-----------------GAAGTGTATTATCGTAAGAAGACTTT----AACGAATACTTTAAATGTTAGATTTCATCGTTATTTTGT-AAAGA-----CATCTTTACCAGAAAGTA-CTATAAACGCAGGAA-TACTTTTCCGTAAGAAAT-ACTTTAT-AAT-GAT-GACATT---AAAAT-CTCTCATTTTAAA-GAG-AC-CTTTC--TATGCTCTTTACA-TAATT-AAAC-AAGATATCAACAG-T-GGGAAAAAATAAA-TGTTTACATTCGAAAAA-GGAAGTCGAAGTTTCTTGTTAAAA-TT--A----A-GAAAACCATCAAAA-
gi|22 : cagtgaagaagtttaagtgtgaagaaaacatagagtgttaattctgtagaatttaggaggatgttcctgaatcctgtcatcagtgctgtcttcagagatttctagtgtccagatttaaatgttgaacaagaattaaatattttccaaaccaagcataggtgactttaatattacattaatgttttcaaatgttatagtgagaagtttacttacgtttctggaatctcaaacacggcgctaataataaaaaaatatataatttttgataatatgtttaatggcaataaacgatataagacctgcaattaggaaaaaaaagcgaggaatctgaccctgatgacaaggacactcctcagtcaaaccacaatgcttggccgtggagcatgctttaaactcttgtgcaatcgattttgatgaacaacataaccttataatatatatannnnnnnnnnnnnnnnnnnnnnnnnatgtacccacatattgttaAGATTTATC-TTAAAGTTT--AG-TCA-GAAAACCACCAAAA-ATAGATAGAACAT-A-----GG-TGA--A--A-AAAAT-ATC-AAAG---AGC-AAA-CGTG-TTTCTTTTAGTTCA-AG-A-TTTGTAAT----AGAATTC---T-AAACAAG-T--TTCATGCAGGA-------ACTGTCCTA-TAA-TTCAGAAGTCGTTTTGCTTGATAC-CAAT
gi|23 : TGAA-GAG-AT-CATTT--TATGCTCTTTACA-TAAGT-ATAC-AAGATATCAACGG-T-AAG-AAAACTAAT-TGCTTACATTCCATAAA-GAAAGTCAAGGTTTATC-TCAAAGTTT--AG-TCA-GAAAACCACC-AAA-ACAGATAAAACAT-A-----GG-TG------A-AAAAA-ATC-AGAA---
gi|24 : GA-----CATCTTTACCAGAA-GTAATTATAAACGCAGGAAATA-TTTTCTGTAAAGAAT-GCTT-AT-AAT-GAT-GACATT---AAAATACTTTC-TTCTGAA-GAG-AT-CATTC--TATTCTCTTTACA-TATTT-ATACAAAGATGTCAAC-G-TGGAG-AAAACTAAT-TGTTTA
gi|25 : ATAATTT--AT---------TTTGTACA-A---ATTTAGATGT-CTTGTTTCTTG-TATA-TAC-ATT---GTGTTAA------CTCAGCAT--TG---T-AGC-A
gi|26 : tttaaactcttttgcaattgactatggtgaacagcagatttagtctcatttacctatatatatagatatttTGTCAAT---------TATTTACATT--TATTTAGATGT-CTTGTT-CTTGATATACTGT-A-TACAGTG-TAAA-----CTCAGTATGCTG---TCAGC-ATGGA-GTTTTGTCGAGAA-ATATTGTAAACAATATTTAGTGTTGCA-GAAT
gi|27 : atcatTGTCAAT---------TATTTACATT--TATTTAGATGT-CTTGTT-CTTGATATACTGT-A-TACAGTG-TAAA-----CTCAGTATGCTG---TCAGC-ATGGA-GTTTTGTCGAGAA-ATATTGTAAACAATATTTAGTGTTGCA-GAAT
gi|28 : atcat-----GG-TGA--A--A-ATAAA--TC-AAAA---AGC-AA-GCGTG-TTTCTTTTAGATCG-TC-G-TTTGTAAT----ATAATTC--TT-AAAGAAG-T--TTTATGCAGGG-------ACTGTCATA-TAA-TTCAGAAGTCGTTTTGCTTGATAA-CAAT
gi|3 : taATATATAATGTCAAT---------TATTTACAT---TATTTAGATGT-CTTGTT-CTTG-TATA-TAC-A-T---GTA-TAATGTAAACTCAGTAT--TG---T-AGC-ATGGATGTTTTGTC-AGAATATATTGTAAACAATATTTAGTGTTGCATGAGTTTATTTCATCACT-----ATCAGA-TCAGAAGTGTATTATCGTAAGGAGACTTT----AACGAATCCTTTAAATGTTAGATTTCGTCGTGATTCTGT-AAAGA-----CATCTATACCAGAGAGTA-TTATAAACGCAGGAA-TACTTTTCCGTTAAGAAT-ACTTTAT-AAT-GAT-GACACT---AAAAT-CTTTCATTCTGAA-GAG-AT-CATTC--TATTCTCTTTACA-T-ATT-GTAC-ATGATGTCAACTG-T-GAG-AAAACTAAT-TGTTTA
gi|30 : ttgttaattcttcagataatccagacggagatgagaggatcacagaaggttcaagtcctatggaagatttggaacctgaaacaaatctacagaccagtgaaaagtccgagtatgaagaatatagtgaggaactacagtnnnnnncaccctgttgtaaggggtgtgtgtgtaaaaggcaatacgaagaaanaagtagtgagaaactgtccagtgatgagagcaacgctgaagaaaacggagaaatgcttgattctgtaggaggatgtaaatgaatcctgttgtcagtggtgcttccgaattttccagtgttaagatttaaaagtggaatgtgatttagatattgaccaggacgttcctcagtcagagtatgtttagctatgaagcgctgattttgaaactcgtgcagtcnnnnnnngaagaatttttgaaatgaaaaaaatatgatggaatcacattatcaatgnctatggtgaaaaacagatttacataagtGGGT-CATCTGTGTAATCTCGGGTG-AGG---TTAA------------TAATT-G-----GTCA-ATGCCCTTGACCGAA--TTTT-CC-AC-AAATC-GA--TAGC-GTT---GTC-----ACTTTAGGTAG-CCAACGACA
gi|31 : TTGCATGAATGTATTTCATCACT-----ATCAGA-TCAGAAGGGTATTATCATAAGGAGACTTT----AACGAATGCTTTAAGTGATAGATATCGTCGTTATTCTGT-AAAGA-----Caca
gi|32 : TTGGGT-CATCTGTGTAATCTCGGGTG-ATG---TTAA------------CAATT-G-----GTC-TGTGCCCTTGACCGGA--TTTTCCA-CA-AAAT--GA--TAGC-GTT---CTC-----ACTTTAGGTAG-CCAACGAC
gi|34 : T-T-----GG-TGA--ATAA-AAAAA-ATC-ATAA---AGC-AAA-CGTG-TTTCTTTTAGATCG-TC-G-TTTATAAT----AGAATTC---T-AAAAAAG-T--TTTATGCAGG
gi|35 : G-TGG--A--A-AAAGG-ATC-AGAA---AGC-AAAG-ATG-TTTCTATTAGGTAG-AG-G-TTTGAAAT----AGAATT
gi|36 : TGATAA-CAATGTGT-TCATTTCAACAT--------------------ataaac
gi|4 : ATACATTATGTCAAT---------TTTATACATAGATATTCAGAAGT-CTTGTTTCTTG-TATA-TGT---T---GTG-TAA------CTCGGCAT--TG---T-AGC-ATGAATATTTTGTC-AGAATATATTGTAAACAAGATTTAGTGTTGCATGGATTTATTTCATCGCT-----ATCAGG-TCAGAAGTGTATTATCGTAAGGGGACTTT----AACGAATGCTTTAAATGTTAGATTTCGTCGTTATTCTGT-AAAGA-----CATCTTT-CCGGAAAGTA-TTATAAACGCAGGAA-TACTTTTCCGTAAAGAAT-ACTTTAT-AAT-GAT-GACATT---AAAAT-CTTTCATTCCGAA-GAG-AT-CATTC--CATGCTCTTTACA-TAATT-ACAC--AGATATCAACAG-T-GAG-AAAACTAAT-TGTTTACATTCCATAAA-GAAAGTCAAGATTTATC-TTAAAGTTT--AG-TAA-GAAAACCACCAAAA-ACAGATAGAACAT-C-----GG-TGA--A--A-AAAAA-TTC-AGAA---AGCAAAAGTGTG-TTTCTTTTAGATTG-TT-GTTTTGTAAT----A-AATTCCTTT-AAAAAAACCG-TTTATCCAGGA-------ACTGTCA----AA--TCAGAAGTTCTATTGCTTGATTA-CAATGTGTGTCATGTCAACAT--------------------ACGTTTTATCG----AATCGT-CTTTTCAGGG-CACCTGTGTAAAGTATGATG-AGGCA-TTG-------------CAATT-GTCTTCGTCATGTGTCGT----CGGA--TTTT-TA-AA-GAATC-AA--TAGG-GTT---TTC-----ACTTTAGATAA-CCCATTACACCCAGggactacatgtgtaaaatgta
gi|5 : ATGCATAATGTCAAT---------TTTGTAGATG--C--TTAGATGTGCGT-TTTATTG-CATA-TTTCA-T---GTG--AA------CTTTGTCT--TG---T-TAT-ATGAATCTTTTGCC-AGAATATATTGTGAACAATATTCAGTGTTGCATGAATTTATTTCATCACTATCAGATCAGA-TCAGAAGTGTATCAT-GTAAGGAGACTTT----AATGAATACTTTAAATGTTAGATGTTGTCATTATTCTGTAAAAGA-----CATCTTTACCGGAAAGTA-TAATAAACTGAGAAA-TACTTTTCCGTAAAGAAT-ACTTTAA-AAT-GAT-GACTTTTTAAAAAT-CTTTCATTTTAAA-GAG-AT-CATTG--TATGCTC
gi|8 : cagtgaagagatcaagtctgaagaaaagcaatctagagattcttgtaggagtgtgaaaaaatttagtctgaggaagatagtgaggaatctgacccagataacattaggacattcctcaatcaaaatcagaatctgaccctggtaacattaggacattcctcaatcaaaatcagcatgctgccatgaagtgctgcaatcggttatggtgaaaaatatatttatactagtatgttAA-GAAAGTCGAGGTTTATC-TTGAAGTTT--AG-TCA-GAAAACCACCAAAA-ACAGATAGAACATACCAGTAGG-TGA--A--ATAAAAA-ATC-AGAA---ATC-AAA-CGTG-TTTCTCTTAGATGG-TC-A-TTTGTAAT----AGAAATC---C-AAAAAAG-T--TTTGTGCAGGA-------ACTGTTATA-TAA-TTCAGAAGTTATATTGCTTGATAA-CAATGT-TGACATGAACACAT--------------------ACGCTTTATCA----AATCGT-C---NNNNNN-NNNNNNNNNNNNNNNNNNNN-NNNNN-NNN-------------NNNNN-NNNNNNNNNNNNNNNNNNNNNNNNGAT-TTTT-TA-AA-GAATC-GA--TAAGTGTTTCATTT-----ACTTTAGATAG-CCCACTACACCCAatcctctaacctactcctcactgaaaacgacaatagaaaacatgataatttttt
gi|9 : CATTCCATAAA-GAAAATCAAGATTTATC-TTACAGTTT--AG-TCA-GAAAACCACCAAAAAACAGATAGAACAT-C-----GG-TG---A--A-AAAAA-GTC-AGAA---AGCAAAAGTGTG-TTTCTTTTAGATTG-TT-G-TTTGTAAT----AAAATTCT-TT-AAAAAAC-CGTTTTATCCAGGA-------ACTGTCA----AA--TCAGAAGTTCTATTGCTTGTTTA-CAATATG-GTCATGTCAACAT--------------------ACGTTTTATCA----AATCGT-C---NNNNNN-NNNNNNNNNNNNNNNNNNNN-NNNNN-NNN-------------NNNNN-NNNNNNNNNNNNNNNNNNNNNNNNGAT-TTTT-CA-AA-GAATC-AA--TAGG-GTT---TTC-----ACTTTAGATAA-CCCATTACACCCA
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GAAGAAACCAGTGAAGAGTCCGAGTCGTATGAGTTTTAGTCTGAAGAAACCAGTGAAGACCTGGAGTCTGATGAAAACAGTGAATGCCTGACCAGTGAAGAGTTTAAGTCTGAAGAAAACATAGAGTGTTAATTCTGTAGAATTGTAAGGGGATGTTCCTGAATCCTGTCGTCAGTGGTGTCCCAGAATTTTCTAGTGTGACAGTCAAAATTTAAAAGTGGAATTAGAATTAGATATTTTTCAAACTAAGCATAGGTGACTTTAACCTTACAAAATGTTTTCAAATGTTATAGTGACGCAGTTTACTTTTCGTTTCTTCTTTGAACACGGCTGGAAATCAATAAAAATATATGTTAGAAAAAGATTAATAAGGACCTAAAATGTGAGGGGGGGGAAGAGGAATCTGACCCTGATGACAAGGACACTCCTCAGTCAAAATCAGAATGCTACCGTGAAGCGGTGCCCTTTAAACTCTTGTGCAATGAGTTATG
Unaligned ( gi|7 ): AATAAAAACAAAATATATTTTTCATATAGTACCTCTTTTATTTGACAGATTGATCACCTTTCCAGTTTTGTTAACCCTTCAGATGATCCAAACGGAGATTATAGGATGAAAAAAAGTTTCAAACTCTGAGAAAGATCTGGAACCTGGAACAGATCTAGAGATAAGTGAAGAGTCTGAGTATGAAGAATATTGTGAGGAACTGCAGTCTGATGAAAGTAGTGAGGAGCTGCAGTCTGATGAAAACAGTGAAAAGATGAGATATGATTCCTTGGAAAGTGATGAGAGGAATACTGAAGACAACAGAGTGTTAATTCTGGAGAATCGTAGGAGGATGTCCCAGAATCCTGTTGTCAACGCTGTCCCAGAATTTGATTTAAAATTGAATCGGGAATTAGATAGTGACAATGAAATTCGTCAGTCAAAATGAGAATGCTGCCATAAAGCGCTGATTTTAGAAACTCTCGTACAG
Unaligned ( gi|10 ): CCTGAAATCCTGTCGTCAGTGCATGTCTTCCAGAATCTTTGTCGTGACCGATCAAAGGTGTCAAGATTGTGAAAAAGTGGAATAAGAAATTAGAGTTTATTATTGCTGAAACTAAACAATTAGGTGACTTTAATCTTACCAAAATTTGTTTTTCAACGTCTCAATCTAAAACGTTGGCGTCTAGTAGTGGCACCCAGCTACGTTTTCTATCTGGAACCATCATCAGAACACGGCCTGCAAATATCAATAAAAAAAATTTAATTGTCTTTTTTACACAAGATCAAGTTAAGAGTCCTAACAAAGTAGAAGGGAAGACGAAAGGAATCTGACCCT
Unaligned ( gi|14 ): TATACCTGTTTTATTCTAGTGATTAATCACCTTTCTTGTTTTGTCAATCCTTCAGATAATCCAGACGGAAATGAGAGGATCAAAGAAGCTTCTACATGTAGTTATGAAGAAGTTCAGGAATCTGGAAGAGGACTGGAAACCAGTGAAGAGTCTGAGTATGAAGAAACCAGTGAAGACCTGGAGTCTGAAAAAACCAGTGAAAAGTCCGAGTCCTATGAGTCTGAGTCTGAAGAAACCCATGAAAACCTGAAGTGTGATGAAAATAGTGAA
Unaligned ( gi|15 ): CATTTTTGTTAATTCTTCAGATAAATCCAGGAGGAAGATGAAGCCTGAGGATACAGAAAACAGAAGGTTCAAAAGTCCTGAATTGGAAGATTTGGACCTTTTGATATGAAGAAAAAATCTACCAGAACCAGTCGAAAAAGTAAAGGACGACCGTTAGTATTGAAGAATATTTATTAAGTGAGGAACTAACAGTCTGATTTGAAGTAGTGGAGAATGTCCGTGATGAGGCAACTGCTTGAAGAAAACGGAGAAAGATA
Unaligned ( gi|16 ): CATTTTTGTTAATTCTTCAGATAAATCCAGGAGGAAGATGAAGCCTGAGGATACAGAAAACAGAAGGTTCAAAAGTCCTGAATTGGAAGATTTGGACCTTTTGATATGAAGAAAAAATCTACCAGAACCAGTCGAAAAAGTAAAGGACGACCGTTAGTATTGAAGAATATTTATTAAGTGAGGAACTAACAGTCTGATTTGAAGTAGTGGAGAATGTCCGTGATGAGGCAACTGCTTGAAGAAAACGGAGAAAGATA
Unaligned ( gi|19 ): TATATGTTTTTACAAGATTAGTAAGGACCAAAAATGTGACGGGAAAAACAAGGATTCTGACCTTGATGACAAGGACACTCCTCAATCAAAATCAGAATGCTGCTGTGAAGCGGTACGCTTTAATCTCTTGTGCAATCGATTTTGATAAACAACATATTTACCTATACATATATTATTAATAATAATTTTATACATA
Unaligned ( gi|20 ): AATTTGAGTGATTTGATCACCTTGTTTTCGTTAATCCGCAGGATTTAACCAGATGGACAATTGGGACACGGCGAGGAGAATCACAGAAGCTTCTAGTTATGAGGAAGTTCAGGAATCTGGAACAGGATCTGGAAAGCACTGAAAGAGTCTTGAGTCTGAAGAAACCAGTGAAGAGTCCGAT
Unaligned ( gi|21 ): TGTTTTATTTGAGTGATTGATCACCTTCCTTATTTTGTTAATCCTAATTCAGATAATCCAGACGGAGGTGTGCAGATCACAGAAGCTTCTAGTTATGAGGAAGTTCAGGAATCTGGAGCAGAACTGGAAACCATTGAAGAGTCCGAGTATTAAGAAACCAGTGAAGACCTGGAGTCTGA
Unaligned ( gi|29 ): GATGAATACAATGATGATTCCCGAGTCCGAGTCCGAGTCTGAAGAAACCCTTGAAGACTTTGAGTCTGATGAACACAGTGATTAGTCCGAGTCCGAAGAGTCCGAGTATGAAGA
Unaligned ( gi|33 ): GAAGCGCTGCTCTTTTAACTTTTGTGCAATTGATTTTGATGAACAACATATTCACCTATATATATGCTGTGCATTTTATACATAT
Unaligned ( gi|37 ): TTAATAAAAACGAACTATATTTTCATACACATAGCTGTACTATATA
Alignments
lowQualScore : 111111111 222 1 22222222222 222222 11 1 111111 1111 11111 1 111 11 1 1111111 11 111111 11111 1111111 111 44444444444444444444 11111 222 3333333333333333333 11111 11 11 111 22222
lowQualScore : 777777777 1 111 1 2 4 2 8 44444444444 8 111111 1 22 777 8 4 6 0 3 1 555555 5 0 4444 1 6 44444 88 5 55 5 1 5 5 000 5 5 5 5 11 5 5 5 0 5 5 5 77 5 6 4 0 55 8 4 0 4 6666666 3 555 44 3 3 3 0 555 7 99 3 4 333333 7777 2 88888 1 55 55 4444444 888 66 1 4 444 55555555555555555555 22222 5 666 4 1 7 4 4444444444444444444 4 00000 4 2 1 8888 55 4 4 66 4 00 4 222 00000 4
lowQualScore : ......... . ... . . . . . ........... . ...... . .. ... . . . . . . ...... . . .... . . ..... .. . .. . . . . ... . . . . .. . . . . . . . .. . . . . .. . . . . ....... . ... .. . . . . ... . .. . . ...... .... . ..... . .. .. ....... ... .. . . ... .................... ..... . ... . . . . ................... . ..... . . . .... .. . . .. . .. . ... ..... .
lowQualScore : 888888888 0 666 9 2 4 8 9 00000000000 9 777777 7 22 888 9 4 5 0 2 9 777777 7 1 2222 0 7 33333 33 7 77 7 4 7 7 000 7 0 0 0 99 7 7 7 9 7 7 7 44 7 3 0 8 55 0 0 8 0 3333333 3 000 66 3 3 3 2 888 3 33 6 3 555555 7777 8 11111 0 55 55 4444444 000 33 9 0 666 66666666666666666666 66666 7 444 4 0 6 4 4444444444444444444 4 11111 8 8 0 6666 00 4 4 22 4 66 4 222 66666 4
consensus : ATACATAATGTCAAT---------TTTNTACATA--TATTTAGATGT-CTTGTTTCTTG-TATA-TGT-A-T---GTG-TAA------CTCGGCAT--TG---T-AGC-ATGGATGTTTTGTC-AGAATATATTGTAAACAATATTCAGTGTTGCATGAATTTATTTCATCACT-----ATCAGA-TCAGAAGTGTATTATCGTAAGGAGACTTT----AACGAATACTTTAAATGTTAGATTTCGTCGTTATTCTGT-AAAGA-----CATCTTTACCGGAAAGTA-TTATAAACGCAGGAA-TACTTTTCCGTAAAGAAT-ACTTTAT-AAT-GAT-GACATT---AAAAT-CTTTCATTCTGAA-GAG-AT-CATTC--TATGCTCTTTACA-TAATT-ATAC-AAGATATCAACAG-T-GAG-AAAACTAAT-TGTTTACATTCCATAAA-GAAAGTCGAGGTTTATC-TTAAAGTTT--AG-TCA-GAAAACCACCAAAA-ACAGATAGAACAT-C-----GG-TGA--A--A-AAAAA-ATC-AGAA---AGC-AAAGCGTG-TTTCTTTTAGATCG-TC-G-TTTGTAAT----AGAATTC--TT-AAANAA--GT--TTTATGCAGGA-------ACTGTCATA-TAA-TTCAGAAGTTGTATTGCTTGATAA-CAATGTGTGTCATGTCAACAT--------------------ACGCTTTATCG----AATCGT-CTTTTCGGGT-CACCTGTGTAANCTCGGGTG-AGGCA-TTA-------------CAATT-GTCTTCGTCCTGTGCCCTTGACCGGA--TTTT-CA-AA-GAATC-GA--TAGG-GTT---TTC-----ACTTTAGGTAG-CCCACTACACCCAG
Reference ( family-3002 ) : ATACATAATGTCAAT---------TTTNTACATA--TATTTAGATGT-CTTGTTTCTTG-TATA-TGT-A-T---GTG-TAA------CTCGGCAT--TG---T-AGC-ATGGATGTTTTGTC-AGAATATATTGTAAACAATATTCAGTGTTGCATGAATTTATTTCATCACT-----ATCAGA-TCAGAAGTGTATTATCGTAAGGAGACTTT----AACGAATACTTTAAATGTTAGATTTCGTCGTTATTCTGT-AAAGA-----CATCTTTACCGGAAAGTA-TTATAAACGCAGGAA-TACTTTTCCGTAAAGAAT-ACTTTAT-AAT-GAT-GACATT---AAAAT-CTTTCATTCTGAA-GAG-AT-CATTC--TATGCTCTTTACA-TAATT-ATAC-AAGATATCAACAG-T-GAG-AAAACTAAT-TGTTTACATTCCATAAA-GAAAGTCGAGGTTTATC-TTAAAGTTT--AG-TCA-GAAAACCACCAAAA-ACAGATAGAACAT-C-----GG-TGA--A--A-AAAAA-ATC-AGAA---AGC-AAAGCGTG-TTTCTTTTAGATCG-TC-G-TTTGTAAT----AGAATTC--TT-AAANAA--GT--TTTATGCAGGA-------ACTGTCATA-TAA-TTCAGAAGTTGTATTGCTTGATAA-CAATGTGTGTCATGTCAACAT--------------------ACGCTTTATCG----AATCGT-CTTTTCGGGT-CACCTGTGTAANCTCGGGTG-AGGCA-TTA-------------CAATT-GTCTTCGTCCTGTGCCCTTGACCGGA--TTTT-CA-AA-GAATC-GA--TAGG-GTT---TTC-----ACTTTAGGTAG-CCCACTACACCCAG
gi|1 : ACAATGTCGAT---------TTTG-ACAT---TATTTAGA-GT-CTTGTT-CTTG-TA-A--GC-A-T---GT--TAA------CTCAGCAT--TGCAGT-AGCGATGAATATTT-GTC-AGAATATACTATAAAC--TATTCAGTGTTGCATGAATT-ATTTCTCCAC------ATCAGAATCAGAGATATAT---CGTAAAGAGACTTTTTTTAA--AATACTTTAAATGTTAAATTTCGTCGTTATTATGT-AAAGACATATCATCTTTACCGGAAAGTA--TAT-AACGCA-GAA-T-CTTTACCATAAAGAAT-ACTTTATAAAT-GAT--ACAT-----AAAT-CTTTCATTCTAAA-AAGAATACACTCTGTATGCTC-TTACAGTAATTGATAC-AAGATATCAAC-G-T-GA--AGAAC-AA--TGTTCACATTCCTTAAC-GAAAGTC-AAGTTTATC-TTAAAG-TT--AGTTCA-GAAAACCACCAAAA-AC-----GAACAT-A-----GGCTGA--A--A-AAAAA-AT--AGAA---AGC-AAA-CATG---TCCTTTAGATCGAGC-T-TGTGTAATTGAAAGAAT----CT-AAACAA--GT--TTTATGC-GGA-------AT----------A-TTC-----TTGGAT------AAAA-CAAT-TGT-TCATGTCAACAT--------------------A--CTTT-TCA----AATCGTGC---GCAGGT-CACCTG-GTAACCT-GGGTGAAGGCA-TTACAAATGGACGAAGCAATT-GTCTTCGGACTGTGTCTT----CGGA--TTTT-CA-A---AATC-AAG-TCGG-GTTA--TTCACATTACTTTAGGTAG-CTCACTACACCCAG
gi|11 : gtaaacgagtgaagagtccgagtacaaagaaaacggtgtgaaactgaggtctggaaggggaaaccacagagaatgtttaattctggaaaatgtagaggatttcgctgaatcctgttcgtctgtggtttctcggaatctatgtcaaatttaaaagtgaaatgaatcgatattgacgaaggaacgttcgtcagttcagttcaagaatgagaatgctaccatgagtatagcgcgctgatttgaaactctcgtgcaacgtcgattatggtgatcgaaaaatcagatttataaaagtctTT-TTGAAGTTTTTAG-TCA-GAAAACCACCAAAA-ACAGATAGAACAT-C-----AG-TGATGA--A-AAAAA-ATCAAGAATTTAGC-AAA-CGTGTTTTCTTTTAGAT-G-TCAA-TTTGT-AT----A-AATTC--TTAAAACAC--GT--TTTATG-AGGA-------ACTGTCATATTAATTTCAGAAGTTATATTGCTTGATAAGCAATGT-TGACAT-TGAACACG-------------------ACGCTTTATCG----AATCGT-CTTTTCAGGTCCACCAGTGTAAACT--GGTG-AGGCATTTA-------------CAATT-GGCTCCGTCCTGTG----TAGTCGGAATTTTT-CA-GATGAATC-GG--TAGG-GGT---TTCACTT-ACTTTAGATAGCCCCACTACACC
gi|12 : TTATC-TCAAAGTTT--AG-TCA-GAAAACCACCAAGA-AGAGAT--------T-----GG-TGA--A--A-AAAAATATC-AAAG---AGC-AAA-CGTG-TTTCTTTTAGATCG-AG-G-TTTGTAAT----AGAATT---TT-AAACAC--GT--TTTATGCAGGA-------ACTGCCATA-TAA-TTCAGAAGTTCTATTGCTTGATAA-CAATGT-TGTCATGAACACAT--------------------ACGCTTTATCG----AATCGT-C--NNNNNNN-NNNNNNNNNNNNNNNNNNNN-NNNNN-NNN-------------NNNNN-NNNNNNNNNNNNNNNNNNNNNNNGAG--TTTT-CA-AA-GAATCTGATGTATG-GTT---TTC-----ACTTTAGATAG-CCCACTACACCCA
gi|13 : cagaaaanG-TGA--A--A-GAAAG-ATC-A-AA---AGC-AAAG-ATG-TTTCT-------------A-TTTGAAAT----AGAATTC--T--AAACAA--GT--TTTATGCAAGACGGGAAAAATGTCATA-TAA-TTCAGAAGCTGTATTGCTTGATAA-CAATGTGT-TCATGTCAACATGGAATACATGTATAAAATATACATTTTATCCCCCCAATCGT-CTTTTCGGGT-CACTTGTGTAATTTCGGGTG-AGGTT-TAA-------------CAATTGGTCTTGGTCCTGTGCCCTTGACCGGA--TTTT-TACAC-AAATC-AA--AAGC-GTT---CTC-----ATTTTAGGTAG-TCCACTACACCAAGt
gi|17 : ATACATAATGTCAATATGATCTATTTTATACATAGATATTTAGAAGT-CTTGTTTCTTG-TATA-TAT---T---GTGTTAA------CTCGGCAT--TG---T-AGC-ATGAATATTTTGTC-AGAATATATTGTAAACAGCATTCAGTGTTGCATGAATTTATTTCATCTCT-----CTCAGA-TCAGAAGTATATTATTGTAAGG
gi|18 : gcactggttttgaaactctcgtgcaatcagttatggtgaaaaacagatttatataagtAACGCAGAAA-C---TTTCCGTAAAGAATTACTTTATTAATAGATTGACACT---AAAAT-CTTTCATTCTGAAAGAG-AT-CATTCG-TATGCTCTTTACA-TAATG-ATAC-AAGATATCAACAGTT-GAG-AAAACTAATGGGTTTACATTCCATAAAGGAAAGTCAAGATTTAGC-TTAAAGTTT--AGCTCAGGAAAACCACC-AAA-ACAGACAGAACA
gi|2 : ATAAT---AAT---------TTTATACATA--T--TTGTATGT-CTTGTTTCTTG-TATA-TAT---T---GTG-T---------TAGGCAT--TG---T-AGC-ATGGAAGTTTCGTC-AGAATATATTATAAACAATGTTCAGTGTTGCATGAATTTATTTCATCA-----------------GAAGTGTATTATCGTAAGAAGACTTT----AACGAATACTTTAAATGTTAGATTTCATCGTTATTTTGT-AAAGA-----CATCTTTACCAGAAAGTA-CTATAAACGCAGGAA-TACTTTTCCGTAAGAAAT-ACTTTAT-AAT-GAT-GACATT---AAAAT-CTCTCATTTTAAA-GAG-AC-CTTTC--TATGCTCTTTACA-TAATT-AAAC-AAGATATCAACAG-T-GGGAAAAAATAAA-TGTTTACATTCGAAAAA-GGAAGTCGAAGTTTCTTGTTAAAA-TT--A----A-GAAAACCATCAAAA-
gi|22 : cagtgaagaagtttaagtgtgaagaaaacatagagtgttaattctgtagaatttaggaggatgttcctgaatcctgtcatcagtgctgtcttcagagatttctagtgtccagatttaaatgttgaacaagaattaaatattttccaaaccaagcataggtgactttaatattacattaatgttttcaaatgttatagtgagaagtttacttacgtttctggaatctcaaacacggcgctaataataaaaaaatatataatttttgataatatgtttaatggcaataaacgatataagacctgcaattaggaaaaaaaagcgaggaatctgaccctgatgacaaggacactcctcagtcaaaccacaatgcttggccgtggagcatgctttaaactcttgtgcaatcgattttgatgaacaacataaccttataatatatatannnnnnnnnnnnnnnnnnnnnnnnnatgtacccacatattgttaAGATTTATC-TTAAAGTTT--AG-TCA-GAAAACCACCAAAA-ATAGATAGAACAT-A-----GG-TGA--A--A-AAAAT-ATC-AAAG---AGC-AAA-CGTG-TTTCTTTTAGTTCA-AG-A-TTTGTAAT----AGAATTC---T-AAACAA--GT--TTCATGCAGGA-------ACTGTCCTA-TAA-TTCAGAAGTCGTTTTGCTTGATAC-CAAT
gi|23 : TGAA-GAG-AT-CATTT--TATGCTCTTTACA-TAAGT-ATAC-AAGATATCAACGG-T-AAG-AAAACTAAT-TGCTTACATTCCATAAA-GAAAGTCAAGGTTTATC-TCAAAGTTT--AG-TCA-GAAAACCACC-AAA-ACAGATAAAACAT-A-----GG-TG------A-AAAAA-ATC-AGAA---
gi|24 : GA-----CATCTTTACCAGAA-GTAATTATAAACGCAGGAAATA-TTTTCTGTAAAGAAT-GCTT-AT-AAT-GAT-GACATT---AAAATACTTTC-TTCTGAA-GAG-AT-CATTC--TATTCTCTTTACA-TATTT-ATACAAAGATGTCAAC-G-TGGAG-AAAACTAAT-TGTTTA
gi|25 : ATAATTT--AT---------TTTGTACA-A---ATTTAGATGT-CTTGTTTCTTG-TATA-TAC-ATT---GTGTTAA------CTCAGCAT--TG---T-AGC-A
gi|26 : tttaaactcttttgcaattgactatggtgaacagcagatttagtctcatttacctatatatatagatatttTGTCAAT---------TATTTACATT--TATTTAGATGT-CTTGTT-CTTGATATACTGT-A-TACAGTG-TAAA-----CTCAGTATGCTG---TCAGC-ATGGA-GTTTTGTCGAGAA-ATATTGTAAACAATATTTAGTGTTGCA-GAAT
gi|27 : atcatTGTCAAT---------TATTTACATT--TATTTAGATGT-CTTGTT-CTTGATATACTGT-A-TACAGTG-TAAA-----CTCAGTATGCTG---TCAGC-ATGGA-GTTTTGTCGAGAA-ATATTGTAAACAATATTTAGTGTTGCA-GAAT
gi|28 : atcat-----GG-TGA--A--A-ATAAA--TC-AAAA---AGC-AA-GCGTG-TTTCTTTTAGATCG-TC-G-TTTGTAAT----ATAATTC--TT-AAAGAA--GT--TTTATGCAGGG-------ACTGTCATA-TAA-TTCAGAAGTCGTTTTGCTTGATAA-CAAT
gi|3 : taATATATAATGTCAAT---------TATTTACAT---TATTTAGATGT-CTTGTT-CTTG-TATA-TAC-A-T---GTA-TAATGTAAACTCAGTAT--TG---T-AGC-ATGGATGTTTTGTC-AGAATATATTGTAAACAATATTTAGTGTTGCATGAGTTTATTTCATCACT-----ATCAGA-TCAGAAGTGTATTATCGTAAGGAGACTTT----AACGAATCCTTTAAATGTTAGATTTCGTCGTGATTCTGT-AAAGA-----CATCTATACCAGAGAGTA-TTATAAACGCAGGAA-TACTTTTCCGTTAAGAAT-ACTTTAT-AAT-GAT-GACACT---AAAAT-CTTTCATTCTGAA-GAG-AT-CATTC--TATTCTCTTTACA-T-ATT-GTAC-ATGATGTCAACTG-T-GAG-AAAACTAAT-TGTTTA
gi|30 : ttgttaattcttcagataatccagacggagatgagaggatcacagaaggttcaagtcctatggaagatttggaacctgaaacaaatctacagaccagtgaaaagtccgagtatgaagaatatagtgaggaactacagtnnnnnncaccctgttgtaaggggtgtgtgtgtaaaaggcaatacgaagaaanaagtagtgagaaactgtccagtgatgagagcaacgctgaagaaaacggagaaatgcttgattctgtaggaggatgtaaatgaatcctgttgtcagtggtgcttccgaattttccagtgttaagatttaaaagtggaatgtgatttagatattgaccaggacgttcctcagtcagagtatgtttagctatgaagcgctgattttgaaactcgtgcagtcnnnnnnngaagaatttttgaaatgaaaaaaatatgatggaatcacattatcaatgnctatggtgaaaaacagatttacataagtGGGT-CATCTGTGTAATCTCGGGTG-AGG---TTAA------------TAATT-G-----GTCA-ATGCCCTTGACCGAA--TTTT-CC-AC-AAATC-GA--TAGC-GTT---GTC-----ACTTTAGGTAG-CCAACGACA
gi|31 : TTGCATGAATGTATTTCATCACT-----ATCAGA-TCAGAAGGGTATTATCATAAGGAGACTTT----AACGAATGCTTTAAGTGATAGATATCGTCGTTATTCTGT-AAAGA-----Caca
gi|32 : TTGGGT-CATCTGTGTAATCTCGGGTG-ATG---TTAA------------CAATT-G-----GTC-TGTGCCCTTGACCGGA--TTTTCCA-CA-AAAT--GA--TAGC-GTT---CTC-----ACTTTAGGTAG-CCAACGAC
gi|34 : T-T-----GG-TGA--ATAA-AAAAA-ATC-ATAA---AGC-AAA-CGTG-TTTCTTTTAGATCG-TC-G-TTTATAAT----AGAATTC---T-AAAAAA--GT--TTTATGCAGG
gi|35 : G-TGG--A--A-AAAGG-ATC-AGAA---AGC-AAAG-ATG-TTTCTATTAGGTAG-AG-G-TTTGAAAT----AGAATT
gi|36 : TGATAA-CAATGTGT-TCATTTCAACAT--------------------ataaac
gi|4 : ATACATTATGTCAAT---------TTTATACATAGATATTCAGAAGT-CTTGTTTCTTG-TATA-TGT---T---GTG-TAA------CTCGGCAT--TG---T-AGC-ATGAATATTTTGTC-AGAATATATTGTAAACAAGATTTAGTGTTGCATGGATTTATTTCATCGCT-----ATCAGG-TCAGAAGTGTATTATCGTAAGGGGACTTT----AACGAATGCTTTAAATGTTAGATTTCGTCGTTATTCTGT-AAAGA-----CATCTTT-CCGGAAAGTA-TTATAAACGCAGGAA-TACTTTTCCGTAAAGAAT-ACTTTAT-AAT-GAT-GACATT---AAAAT-CTTTCATTCCGAA-GAG-AT-CATTC--CATGCTCTTTACA-TAATT-ACAC--AGATATCAACAG-T-GAG-AAAACTAAT-TGTTTACATTCCATAAA-GAAAGTCAAGATTTATC-TTAAAGTTT--AG-TAA-GAAAACCACCAAAA-ACAGATAGAACAT-C-----GG-TGA--A--A-AAAAA-TTC-AGAA---AGCAAAAGTGTG-TTTCTTTTAGATTG-TT-GTTTTGTAAT----A-AATTCCTTT-AAAAAA--ACCGTTTATCCAGGA-------ACTGTCA----AA--TCAGAAGTTCTATTGCTTGATTA-CAATGTGTGTCATGTCAACAT--------------------ACGTTTTATCG----AATCGT-CTTTTCAGGG-CACCTGTGTAAAGTATGATG-AGGCA-TTG-------------CAATT-GTCTTCGTCATGTGTCGT----CGGA--TTTT-TA-AA-GAATC-AA--TAGG-GTT---TTC-----ACTTTAGATAA-CCCATTACACCCAGggactacatgtgtaaaatgta
gi|5 : ATGCATAATGTCAAT---------TTTGTAGATG--C--TTAGATGTGCGT-TTTATTG-CATA-TTTCA-T---GTG--AA------CTTTGTCT--TG---T-TAT-ATGAATCTTTTGCC-AGAATATATTGTGAACAATATTCAGTGTTGCATGAATTTATTTCATCACTATCAGATCAGA-TCAGAAGTGTATCAT-GTAAGGAGACTTT----AATGAATACTTTAAATGTTAGATGTTGTCATTATTCTGTAAAAGA-----CATCTTTACCGGAAAGTA-TAATAAACTGAGAAA-TACTTTTCCGTAAAGAAT-ACTTTAA-AAT-GAT-GACTTTTTAAAAAT-CTTTCATTTTAAA-GAG-AT-CATTG--TATGCTC
gi|8 : cagtgaagagatcaagtctgaagaaaagcaatctagagattcttgtaggagtgtgaaaaaatttagtctgaggaagatagtgaggaatctgacccagataacattaggacattcctcaatcaaaatcagaatctgaccctggtaacattaggacattcctcaatcaaaatcagcatgctgccatgaagtgctgcaatcggttatggtgaaaaatatatttatactagtatgttAA-GAAAGTCGAGGTTTATC-TTGAAGTTT--AG-TCA-GAAAACCACCAAAA-ACAGATAGAACATACCAGTAGG-TGA--A--ATAAAAA-ATC-AGAA---ATC-AAA-CGTG-TTTCTCTTAGATGG-TC-A-TTTGTAAT----AGAAATC---C-AAAAAA--GT--TTTGTGCAGGA-------ACTGTTATA-TAA-TTCAGAAGTTATATTGCTTGATAA-CAATGT-TGACATGAACACAT--------------------ACGCTTTATCA----AATCGT-C---NNNNNN-NNNNNNNNNNNNNNNNNNNN-NNNNN-NNN-------------NNNNN-NNNNNNNNNNNNNNNNNNNNNNNNGAT-TTTT-TA-AA-GAATC-GA--TAAGTGTTTCATTT-----ACTTTAGATAG-CCCACTACACCCAatcctctaacctactcctcactgaaaacgacaatagaaaacatgataatttttt
gi|9 : CATTCCATAAA-GAAAATCAAGATTTATC-TTACAGTTT--AG-TCA-GAAAACCACCAAAAAACAGATAGAACAT-C-----GG-TG---A--A-AAAAA-GTC-AGAA---AGCAAAAGTGTG-TTTCTTTTAGATTG-TT-G-TTTGTAAT----AAAATTCT-TT-AAAAAACCGT--TTTATCCAGGA-------ACTGTCA----AA--TCAGAAGTTCTATTGCTTGTTTA-CAATATG-GTCATGTCAACAT--------------------ACGTTTTATCA----AATCGT-C---NNNNNN-NNNNNNNNNNNNNNNNNNNN-NNNNN-NNN-------------NNNNN-NNNNNNNNNNNNNNNNNNNNNNNNGAT-TTTT-CA-AA-GAATC-AA--TAGG-GTT---TTC-----ACTTTAGATAA-CCCATTACACCCA
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GAAGAAACCAGTGAAGAGTCCGAGTCGTATGAGTTTTAGTCTGAAGAAACCAGTGAAGACCTGGAGTCTGATGAAAACAGTGAATGCCTGACCAGTGAAGAGTTTAAGTCTGAAGAAAACATAGAGTGTTAATTCTGTAGAATTGTAAGGGGATGTTCCTGAATCCTGTCGTCAGTGGTGTCCCAGAATTTTCTAGTGTGACAGTCAAAATTTAAAAGTGGAATTAGAATTAGATATTTTTCAAACTAAGCATAGGTGACTTTAACCTTACAAAATGTTTTCAAATGTTATAGTGACGCAGTTTACTTTTCGTTTCTTCTTTGAACACGGCTGGAAATCAATAAAAATATATGTTAGAAAAAGATTAATAAGGACCTAAAATGTGAGGGGGGGGAAGAGGAATCTGACCCTGATGACAAGGACACTCCTCAGTCAAAATCAGAATGCTACCGTGAAGCGGTGCCCTTTAAACTCTTGTGCAATGAGTTATG
Unaligned ( gi|7 ): AATAAAAACAAAATATATTTTTCATATAGTACCTCTTTTATTTGACAGATTGATCACCTTTCCAGTTTTGTTAACCCTTCAGATGATCCAAACGGAGATTATAGGATGAAAAAAAGTTTCAAACTCTGAGAAAGATCTGGAACCTGGAACAGATCTAGAGATAAGTGAAGAGTCTGAGTATGAAGAATATTGTGAGGAACTGCAGTCTGATGAAAGTAGTGAGGAGCTGCAGTCTGATGAAAACAGTGAAAAGATGAGATATGATTCCTTGGAAAGTGATGAGAGGAATACTGAAGACAACAGAGTGTTAATTCTGGAGAATCGTAGGAGGATGTCCCAGAATCCTGTTGTCAACGCTGTCCCAGAATTTGATTTAAAATTGAATCGGGAATTAGATAGTGACAATGAAATTCGTCAGTCAAAATGAGAATGCTGCCATAAAGCGCTGATTTTAGAAACTCTCGTACAG
Unaligned ( gi|10 ): CCTGAAATCCTGTCGTCAGTGCATGTCTTCCAGAATCTTTGTCGTGACCGATCAAAGGTGTCAAGATTGTGAAAAAGTGGAATAAGAAATTAGAGTTTATTATTGCTGAAACTAAACAATTAGGTGACTTTAATCTTACCAAAATTTGTTTTTCAACGTCTCAATCTAAAACGTTGGCGTCTAGTAGTGGCACCCAGCTACGTTTTCTATCTGGAACCATCATCAGAACACGGCCTGCAAATATCAATAAAAAAAATTTAATTGTCTTTTTTACACAAGATCAAGTTAAGAGTCCTAACAAAGTAGAAGGGAAGACGAAAGGAATCTGACCCT
Unaligned ( gi|14 ): TATACCTGTTTTATTCTAGTGATTAATCACCTTTCTTGTTTTGTCAATCCTTCAGATAATCCAGACGGAAATGAGAGGATCAAAGAAGCTTCTACATGTAGTTATGAAGAAGTTCAGGAATCTGGAAGAGGACTGGAAACCAGTGAAGAGTCTGAGTATGAAGAAACCAGTGAAGACCTGGAGTCTGAAAAAACCAGTGAAAAGTCCGAGTCCTATGAGTCTGAGTCTGAAGAAACCCATGAAAACCTGAAGTGTGATGAAAATAGTGAA
Unaligned ( gi|15 ): CATTTTTGTTAATTCTTCAGATAAATCCAGGAGGAAGATGAAGCCTGAGGATACAGAAAACAGAAGGTTCAAAAGTCCTGAATTGGAAGATTTGGACCTTTTGATATGAAGAAAAAATCTACCAGAACCAGTCGAAAAAGTAAAGGACGACCGTTAGTATTGAAGAATATTTATTAAGTGAGGAACTAACAGTCTGATTTGAAGTAGTGGAGAATGTCCGTGATGAGGCAACTGCTTGAAGAAAACGGAGAAAGATA
Unaligned ( gi|16 ): CATTTTTGTTAATTCTTCAGATAAATCCAGGAGGAAGATGAAGCCTGAGGATACAGAAAACAGAAGGTTCAAAAGTCCTGAATTGGAAGATTTGGACCTTTTGATATGAAGAAAAAATCTACCAGAACCAGTCGAAAAAGTAAAGGACGACCGTTAGTATTGAAGAATATTTATTAAGTGAGGAACTAACAGTCTGATTTGAAGTAGTGGAGAATGTCCGTGATGAGGCAACTGCTTGAAGAAAACGGAGAAAGATA
Unaligned ( gi|19 ): TATATGTTTTTACAAGATTAGTAAGGACCAAAAATGTGACGGGAAAAACAAGGATTCTGACCTTGATGACAAGGACACTCCTCAATCAAAATCAGAATGCTGCTGTGAAGCGGTACGCTTTAATCTCTTGTGCAATCGATTTTGATAAACAACATATTTACCTATACATATATTATTAATAATAATTTTATACATA
Unaligned ( gi|20 ): AATTTGAGTGATTTGATCACCTTGTTTTCGTTAATCCGCAGGATTTAACCAGATGGACAATTGGGACACGGCGAGGAGAATCACAGAAGCTTCTAGTTATGAGGAAGTTCAGGAATCTGGAACAGGATCTGGAAAGCACTGAAAGAGTCTTGAGTCTGAAGAAACCAGTGAAGAGTCCGAT
Unaligned ( gi|21 ): TGTTTTATTTGAGTGATTGATCACCTTCCTTATTTTGTTAATCCTAATTCAGATAATCCAGACGGAGGTGTGCAGATCACAGAAGCTTCTAGTTATGAGGAAGTTCAGGAATCTGGAGCAGAACTGGAAACCATTGAAGAGTCCGAGTATTAAGAAACCAGTGAAGACCTGGAGTCTGA
Unaligned ( gi|29 ): GATGAATACAATGATGATTCCCGAGTCCGAGTCCGAGTCTGAAGAAACCCTTGAAGACTTTGAGTCTGATGAACACAGTGATTAGTCCGAGTCCGAAGAGTCCGAGTATGAAGA
Unaligned ( gi|33 ): GAAGCGCTGCTCTTTTAACTTTTGTGCAATTGATTTTGATGAACAACATATTCACCTATATATATGCTGTGCATTTTATACATAT
Unaligned ( gi|37 ): TTAATAAAAACGAACTATATTTTCATACACATAGCTGTACTATATA
Alignments
lowQualScore : 111111111 222 1 22222222222 222222 11 1 111111 1111 11111 1 111 11 1 1111111 11 111111 11111 1111111 111 44444444444444444444 11111 222 3333333333333333333 11111 11 11 111 22222
lowQualScore : 777777777 1 111 1 2 4 2 8 44444444444 8 111111 1 22 777 8 4 6 0 3 1 555555 5 0 4444 1 6 44444 88 5 55 5 1 5 5 000 5 5 5 5 11 5 5 5 0 5 5 5 77 5 6 4 0 55 8 4 0 4 6666666 3 555 44 3 3 3 0 555 7 99 3 4 333333 7777 2 88888 1 55 55 4444444 888 66 1 4 444 55555555555555555555 22222 5 666 4 1 7 4 4444444444444444444 4 00000 4 2 1 8888 55 4 4 66 4 00 4 222 00000 4
lowQualScore : ......... . ... . . . . . ........... . ...... . .. ... . . . . . . ...... . . .... . . ..... .. . .. . . . . ... . . . . .. . . . . . . . .. . . . . .. . . . . ....... . ... .. . . . . ... . .. . . ...... .... . ..... . .. .. ....... ... .. . . ... .................... ..... . ... . . . . ................... . ..... . . . .... .. . . .. . .. . ... ..... .
lowQualScore : 888888888 0 666 9 2 4 8 9 00000000000 9 777777 7 22 888 9 4 5 0 2 9 777777 7 1 2222 0 7 33333 33 7 77 7 4 7 7 000 7 0 0 0 99 7 7 7 9 7 7 7 44 7 3 0 8 55 0 0 8 0 3333333 3 000 66 3 3 3 2 888 3 33 6 3 555555 7777 8 11111 0 55 55 4444444 000 33 9 0 666 66666666666666666666 66666 7 444 4 0 6 4 4444444444444444444 4 11111 8 8 0 6666 00 4 4 22 4 66 4 222 66666 4
consensus : ATACATAATGTCAAT---------TTTNTACATA--TATTTAGATGT-CTTGTTTCTTG-TATA-TGT-A-T---GTG-TAA------CTCGGCAT--TG---T-AGC-ATGGATGTTTTGTC-AGAATATATTGTAAACAATATTCAGTGTTGCATGAATTTATTTCATCACT-----ATCAGA-TCAGAAGTGTATTATCGTAAGGAGACTTT----AACGAATACTTTAAATGTTAGATTTCGTCGTTATTCTGT-AAAGA-----CATCTTTACCGGAAAGTA-TTATAAACGCAGGAA-TACTTTTCCGTAAAGAAT-ACTTTAT-AAT-GAT-GACATT---AAAAT-CTTTCATTCTGAA-GAG-AT-CATTC--TATGCTCTTTACA-TAATT-ATAC-AAGATATCAACAG-T-GAG-AAAACTAAT-TGTTTACATTCCATAAA-GAAAGTCGAGGTTTATC-TTAAAGTTT--AG-TCA-GAAAACCACCAAAA-ACAGATAGAACAT-C-----GG-TGA--A--A-AAAAA-ATC-AGAA---AGC-AAAGCGTG-TTTCTTTTAGATCG-TC-G-TTTGTAAT----AGAATTC--TT-AAANAA--GT--TTTATGCAGGA-------ACTGTCATA-TAA-TTCAGAAGTTGTATTGCTTGATAA-CAATGTGTGTCATGTCAACAT--------------------ACGCTTTATCG----AATCGT-CTTTTCGGGT-CACCTGTGTAANCTCGGGTG-AGGCA-TTA-------------CAATT-GTCTTCGTCCTGTGCCCTTGACCGGA--TTTT-CA-AA-GAATC-GA--TAGG-GTT---TTC-----ACTTTAGGTAG-CCCACTACACCCAG
Reference ( family-3002 ) : ATACATAATGTCAAT---------TTTNTACATA--TATTTAGATGT-CTTGTTTCTTG-TATA-TGT-A-T---GTG-TAA------CTCGGCAT--TG---T-AGC-ATGGATGTTTTGTC-AGAATATATTGTAAACAATATTCAGTGTTGCATGAATTTATTTCATCACT-----ATCAGA-TCAGAAGTGTATTATCGTAAGGAGACTTT----AACGAATACTTTAAATGTTAGATTTCGTCGTTATTCTGT-AAAGA-----CATCTTTACCGGAAAGTA-TTATAAACGCAGGAA-TACTTTTCCGTAAAGAAT-ACTTTAT-AAT-GAT-GACATT---AAAAT-CTTTCATTCTGAA-GAG-AT-CATTC--TATGCTCTTTACA-TAATT-ATAC-AAGATATCAACAG-T-GAG-AAAACTAAT-TGTTTACATTCCATAAA-GAAAGTCGAGGTTTATC-TTAAAGTTT--AG-TCA-GAAAACCACCAAAA-ACAGATAGAACAT-C-----GG-TGA--A--A-AAAAA-ATC-AGAA---AGC-AAAGCGTG-TTTCTTTTAGATCG-TC-G-TTTGTAAT----AGAATTC--TT-AAANAA--GT--TTTATGCAGGA-------ACTGTCATA-TAA-TTCAGAAGTTGTATTGCTTGATAA-CAATGTGTGTCATGTCAACAT--------------------ACGCTTTATCG----AATCGT-CTTTTCGGGT-CACCTGTGTAANCTCGGGTG-AGGCA-TTA-------------CAATT-GTCTTCGTCCTGTGCCCTTGACCGGA--TTTT-CA-AA-GAATC-GA--TAGG-GTT---TTC-----ACTTTAGGTAG-CCCACTACACCCAG
gi|1 : ACAATGTCGAT---------TTTG-ACAT---TATTTAGA-GT-CTTGTT-CTTG-TA-A--GC-A-T---GT--TAA------CTCAGCAT--TGCAGT-AGCGATGAATATTT-GTC-AGAATATACTATAAAC--TATTCAGTGTTGCATGAATT-ATTTCTCCAC------ATCAGAATCAGAGATATAT---CGTAAAGAGACTTTTTTTAA--AATACTTTAAATGTTAAATTTCGTCGTTATTATGT-AAAGACATATCATCTTTACCGGAAAGTA--TAT-AACGCA-GAA-T-CTTTACCATAAAGAAT-ACTTTATAAAT-GAT--ACAT-----AAAT-CTTTCATTCTAAA-AAGAATACACTCTGTATGCTC-TTACAGTAATTGATAC-AAGATATCAAC-G-T-GA--AGAAC-AA--TGTTCACATTCCTTAAC-GAAAGTC-AAGTTTATC-TTAAAG-TT--AGTTCA-GAAAACCACCAAAA-AC-----GAACAT-A-----GGCTGA--A--A-AAAAA-AT--AGAA---AGC-AAA-CATG---TCCTTTAGATCGAGC-T-TGTGTAATTGAAAGAAT----CT-AAACAA--GT--TTTATGC-GGA-------AT----------A-TTC-----TTGGAT------AAAA-CAAT-TGT-TCATGTCAACAT--------------------A--CTTT-TCA----AATCGTGC---GCAGGT-CACCTG-GTAACCT-GGGTGAAGGCA-TTACAAATGGACGAAGCAATT-GTCTTCGGACTGTGTCTT----CGGA--TTTT-CA-A---AATC-AAG-TCGG-GTTA--TTCACATTACTTTAGGTAG-CTCACTACACCCAG
gi|11 : gtaaacgagtgaagagtccgagtacaaagaaaacggtgtgaaactgaggtctggaaggggaaaccacagagaatgtttaattctggaaaatgtagaggatttcgctgaatcctgttcgtctgtggtttctcggaatctatgtcaaatttaaaagtgaaatgaatcgatattgacgaaggaacgttcgtcagttcagttcaagaatgagaatgctaccatgagtatagcgcgctgatttgaaactctcgtgcaacgtcgattatggtgatcgaaaaatcagatttataaaagtctTT-TTGAAGTTTTTAG-TCA-GAAAACCACCAAAA-ACAGATAGAACAT-C-----AG-TGATGA--A-AAAAA-ATCAAGAATTTAGC-AAA-CGTGTTTTCTTTTAGAT-G-TCAA-TTTGT-AT----A-AATTC--TTAAAACAC--GT--TTTATG-AGGA-------ACTGTCATATTAATTTCAGAAGTTATATTGCTTGATAAGCAATGT-TGACAT-TGAACACG-------------------ACGCTTTATCG----AATCGT-CTTTTCAGGTCCACCAGTGTAAACT--GGTG-AGGCATTTA-------------CAATT-GGCTCCGTCCTGTG----TAGTCGGAATTTTT-CA-GATGAATC-GG--TAGG-GGT---TTCACTT-ACTTTAGATAGCCCCACTACACC
gi|12 : TTATC-TCAAAGTTT--AG-TCA-GAAAACCACCAAGA-AGAGAT--------T-----GG-TGA--A--A-AAAAATATC-AAAG---AGC-AAA-CGTG-TTTCTTTTAGATCG-AG-G-TTTGTAAT----AGAATT---TT-AAACAC--GT--TTTATGCAGGA-------ACTGCCATA-TAA-TTCAGAAGTTCTATTGCTTGATAA-CAATGT-TGTCATGAACACAT--------------------ACGCTTTATCG----AATCGT-C--NNNNNNN-NNNNNNNNNNNNNNNNNNNN-NNNNN-NNN-------------NNNNN-NNNNNNNNNNNNNNNNNNNNNNNGAG--TTTT-CA-AA-GAATCTGATGTATG-GTT---TTC-----ACTTTAGATAG-CCCACTACACCCA
gi|13 : cagaaaanG-TGA--A--A-GAAAG-ATC-A-AA---AGC-AAAG-ATG-TTTCT-------------A-TTTGAAAT----AGAATTC--T--AAACAA--GT--TTTATGCAAGACGGGAAAAATGTCATA-TAA-TTCAGAAGCTGTATTGCTTGATAA-CAATGTGT-TCATGTCAACATGGAATACATGTATAAAATATACATTTTATCCCCCCAATCGT-CTTTTCGGGT-CACTTGTGTAATTTCGGGTG-AGGTT-TAA-------------CAATTGGTCTTGGTCCTGTGCCCTTGACCGGA--TTTT-TACAC-AAATC-AA--AAGC-GTT---CTC-----ATTTTAGGTAG-TCCACTACACCAAGt
gi|17 : ATACATAATGTCAATATGATCTATTTTATACATAGATATTTAGAAGT-CTTGTTTCTTG-TATA-TAT---T---GTGTTAA------CTCGGCAT--TG---T-AGC-ATGAATATTTTGTC-AGAATATATTGTAAACAGCATTCAGTGTTGCATGAATTTATTTCATCTCT-----CTCAGA-TCAGAAGTATATTATTGTAAGG
gi|18 : gcactggttttgaaactctcgtgcaatcagttatggtgaaaaacagatttatataagtAACGCAGAAA-C---TTTCCGTAAAGAATTACTTTATTAATAGATTGACACT---AAAAT-CTTTCATTCTGAAAGAG-AT-CATTCG-TATGCTCTTTACA-TAATG-ATAC-AAGATATCAACAGTT-GAG-AAAACTAATGGGTTTACATTCCATAAAGGAAAGTCAAGATTTAGC-TTAAAGTTT--AGCTCAGGAAAACCACC-AAA-ACAGACAGAACA
gi|2 : ATAAT---AAT---------TTTATACATA--T--TTGTATGT-CTTGTTTCTTG-TATA-TAT---T---GTG-T---------TAGGCAT--TG---T-AGC-ATGGAAGTTTCGTC-AGAATATATTATAAACAATGTTCAGTGTTGCATGAATTTATTTCATCA-----------------GAAGTGTATTATCGTAAGAAGACTTT----AACGAATACTTTAAATGTTAGATTTCATCGTTATTTTGT-AAAGA-----CATCTTTACCAGAAAGTA-CTATAAACGCAGGAA-TACTTTTCCGTAAGAAAT-ACTTTAT-AAT-GAT-GACATT---AAAAT-CTCTCATTTTAAA-GAG-AC-CTTTC--TATGCTCTTTACA-TAATT-AAAC-AAGATATCAACAG-T-GGGAAAAAATAAA-TGTTTACATTCGAAAAA-GGAAGTCGAAGTTTCTTGTTAAAA-TT--A----A-GAAAACCATCAAAA-
gi|22 : cagtgaagaagtttaagtgtgaagaaaacatagagtgttaattctgtagaatttaggaggatgttcctgaatcctgtcatcagtgctgtcttcagagatttctagtgtccagatttaaatgttgaacaagaattaaatattttccaaaccaagcataggtgactttaatattacattaatgttttcaaatgttatagtgagaagtttacttacgtttctggaatctcaaacacggcgctaataataaaaaaatatataatttttgataatatgtttaatggcaataaacgatataagacctgcaattaggaaaaaaaagcgaggaatctgaccctgatgacaaggacactcctcagtcaaaccacaatgcttggccgtggagcatgctttaaactcttgtgcaatcgattttgatgaacaacataaccttataatatatatannnnnnnnnnnnnnnnnnnnnnnnnatgtacccacatattgttaAGATTTATC-TTAAAGTTT--AG-TCA-GAAAACCACCAAAA-ATAGATAGAACAT-A-----GG-TGA--A--A-AAAAT-ATC-AAAG---AGC-AAA-CGTG-TTTCTTTTAGTTCA-AG-A-TTTGTAAT----AGAATTC---T-AAACAA--GT--TTCATGCAGGA-------ACTGTCCTA-TAA-TTCAGAAGTCGTTTTGCTTGATAC-CAAT
gi|23 : TGAA-GAG-AT-CATTT--TATGCTCTTTACA-TAAGT-ATAC-AAGATATCAACGG-T-AAG-AAAACTAAT-TGCTTACATTCCATAAA-GAAAGTCAAGGTTTATC-TCAAAGTTT--AG-TCA-GAAAACCACC-AAA-ACAGATAAAACAT-A-----GG-TG------A-AAAAA-ATC-AGAA---
gi|24 : GA-----CATCTTTACCAGAA-GTAATTATAAACGCAGGAAATA-TTTTCTGTAAAGAAT-GCTT-AT-AAT-GAT-GACATT---AAAATACTTTC-TTCTGAA-GAG-AT-CATTC--TATTCTCTTTACA-TATTT-ATACAAAGATGTCAAC-G-TGGAG-AAAACTAAT-TGTTTA
gi|25 : ATAATTT--AT---------TTTGTACA-A---ATTTAGATGT-CTTGTTTCTTG-TATA-TAC-ATT---GTGTTAA------CTCAGCAT--TG---T-AGC-A
gi|26 : tttaaactcttttgcaattgactatggtgaacagcagatttagtctcatttacctatatatatagatatttTGTCAAT---------TATTTACATT--TATTTAGATGT-CTTGTT-CTTGATATACTGT-A-TACAGTG-TAAA-----CTCAGTATGCTG---TCAGC-ATGGA-GTTTTGTCGAGAA-ATATTGTAAACAATATTTAGTGTTGCA-GAAT
gi|27 : atcatTGTCAAT---------TATTTACATT--TATTTAGATGT-CTTGTT-CTTGATATACTGT-A-TACAGTG-TAAA-----CTCAGTATGCTG---TCAGC-ATGGA-GTTTTGTCGAGAA-ATATTGTAAACAATATTTAGTGTTGCA-GAAT
gi|28 : atcat-----GG-TGA--A--A-ATAAA--TC-AAAA---AGC-AA-GCGTG-TTTCTTTTAGATCG-TC-G-TTTGTAAT----ATAATTC--TT-AAAGAA--GT--TTTATGCAGGG-------ACTGTCATA-TAA-TTCAGAAGTCGTTTTGCTTGATAA-CAAT
gi|3 : taATATATAATGTCAAT---------TATTTACAT---TATTTAGATGT-CTTGTT-CTTG-TATA-TAC-A-T---GTA-TAATGTAAACTCAGTAT--TG---T-AGC-ATGGATGTTTTGTC-AGAATATATTGTAAACAATATTTAGTGTTGCATGAGTTTATTTCATCACT-----ATCAGA-TCAGAAGTGTATTATCGTAAGGAGACTTT----AACGAATCCTTTAAATGTTAGATTTCGTCGTGATTCTGT-AAAGA-----CATCTATACCAGAGAGTA-TTATAAACGCAGGAA-TACTTTTCCGTTAAGAAT-ACTTTAT-AAT-GAT-GACACT---AAAAT-CTTTCATTCTGAA-GAG-AT-CATTC--TATTCTCTTTACA-T-ATT-GTAC-ATGATGTCAACTG-T-GAG-AAAACTAAT-TGTTTA
gi|30 : ttgttaattcttcagataatccagacggagatgagaggatcacagaaggttcaagtcctatggaagatttggaacctgaaacaaatctacagaccagtgaaaagtccgagtatgaagaatatagtgaggaactacagtnnnnnncaccctgttgtaaggggtgtgtgtgtaaaaggcaatacgaagaaanaagtagtgagaaactgtccagtgatgagagcaacgctgaagaaaacggagaaatgcttgattctgtaggaggatgtaaatgaatcctgttgtcagtggtgcttccgaattttccagtgttaagatttaaaagtggaatgtgatttagatattgaccaggacgttcctcagtcagagtatgtttagctatgaagcgctgattttgaaactcgtgcagtcnnnnnnngaagaatttttgaaatgaaaaaaatatgatggaatcacattatcaatgnctatggtgaaaaacagatttacataagtGGGT-CATCTGTGTAATCTCGGGTG-AGG---TTAA------------TAATT-G-----GTCA-ATGCCCTTGACCGAA--TTTT-CC-AC-AAATC-GA--TAGC-GTT---GTC-----ACTTTAGGTAG-CCAACGACA
gi|31 : TTGCATGAATGTATTTCATCACT-----ATCAGA-TCAGAAGGGTATTATCATAAGGAGACTTT----AACGAATGCTTTAAGTGATAGATATCGTCGTTATTCTGT-AAAGA-----Caca
gi|32 : TTGGGT-CATCTGTGTAATCTCGGGTG-ATG---TTAA------------CAATT-G-----GTC-TGTGCCCTTGACCGGA--TTTTCCA-CA-AAAT--GA--TAGC-GTT---CTC-----ACTTTAGGTAG-CCAACGAC
gi|34 : T-T-----GG-TGA--ATAA-AAAAA-ATC-ATAA---AGC-AAA-CGTG-TTTCTTTTAGATCG-TC-G-TTTATAAT----AGAATTC---T-AAAAAA--GT--TTTATGCAGG
gi|35 : G-TGG--A--A-AAAGG-ATC-AGAA---AGC-AAAG-ATG-TTTCTATTAGGTAG-AG-G-TTTGAAAT----AGAATT
gi|36 : TGATAA-CAATGTGT-TCATTTCAACAT--------------------ataaac
gi|4 : ATACATTATGTCAAT---------TTTATACATAGATATTCAGAAGT-CTTGTTTCTTG-TATA-TGT---T---GTG-TAA------CTCGGCAT--TG---T-AGC-ATGAATATTTTGTC-AGAATATATTGTAAACAAGATTTAGTGTTGCATGGATTTATTTCATCGCT-----ATCAGG-TCAGAAGTGTATTATCGTAAGGGGACTTT----AACGAATGCTTTAAATGTTAGATTTCGTCGTTATTCTGT-AAAGA-----CATCTTT-CCGGAAAGTA-TTATAAACGCAGGAA-TACTTTTCCGTAAAGAAT-ACTTTAT-AAT-GAT-GACATT---AAAAT-CTTTCATTCCGAA-GAG-AT-CATTC--CATGCTCTTTACA-TAATT-ACAC--AGATATCAACAG-T-GAG-AAAACTAAT-TGTTTACATTCCATAAA-GAAAGTCAAGATTTATC-TTAAAGTTT--AG-TAA-GAAAACCACCAAAA-ACAGATAGAACAT-C-----GG-TGA--A--A-AAAAA-TTC-AGAA---AGCAAAAGTGTG-TTTCTTTTAGATTG-TT-GTTTTGTAAT----A-AATTCCTTT-AAAAAA--ACCGTTTATCCAGGA-------ACTGTCA----AA--TCAGAAGTTCTATTGCTTGATTA-CAATGTGTGTCATGTCAACAT--------------------ACGTTTTATCG----AATCGT-CTTTTCAGGG-CACCTGTGTAAAGTATGATG-AGGCA-TTG-------------CAATT-GTCTTCGTCATGTGTCGT----CGGA--TTTT-TA-AA-GAATC-AA--TAGG-GTT---TTC-----ACTTTAGATAA-CCCATTACACCCAGggactacatgtgtaaaatgta
gi|5 : ATGCATAATGTCAAT---------TTTGTAGATG--C--TTAGATGTGCGT-TTTATTG-CATA-TTTCA-T---GTG--AA------CTTTGTCT--TG---T-TAT-ATGAATCTTTTGCC-AGAATATATTGTGAACAATATTCAGTGTTGCATGAATTTATTTCATCACTATCAGATCAGA-TCAGAAGTGTATCAT-GTAAGGAGACTTT----AATGAATACTTTAAATGTTAGATGTTGTCATTATTCTGTAAAAGA-----CATCTTTACCGGAAAGTA-TAATAAACTGAGAAA-TACTTTTCCGTAAAGAAT-ACTTTAA-AAT-GAT-GACTTTTTAAAAAT-CTTTCATTTTAAA-GAG-AT-CATTG--TATGCTC
gi|8 : cagtgaagagatcaagtctgaagaaaagcaatctagagattcttgtaggagtgtgaaaaaatttagtctgaggaagatagtgaggaatctgacccagataacattaggacattcctcaatcaaaatcagaatctgaccctggtaacattaggacattcctcaatcaaaatcagcatgctgccatgaagtgctgcaatcggttatggtgaaaaatatatttatactagtatgttAA-GAAAGTCGAGGTTTATC-TTGAAGTTT--AG-TCA-GAAAACCACCAAAA-ACAGATAGAACATACCAGTAGG-TGA--A--ATAAAAA-ATC-AGAA---ATC-AAA-CGTG-TTTCTCTTAGATGG-TC-A-TTTGTAAT----AGAAATC---C-AAAAAA--GT--TTTGTGCAGGA-------ACTGTTATA-TAA-TTCAGAAGTTATATTGCTTGATAA-CAATGT-TGACATGAACACAT--------------------ACGCTTTATCA----AATCGT-C---NNNNNN-NNNNNNNNNNNNNNNNNNNN-NNNNN-NNN-------------NNNNN-NNNNNNNNNNNNNNNNNNNNNNNNGAT-TTTT-TA-AA-GAATC-GA--TAAGTGTTTCATTT-----ACTTTAGATAG-CCCACTACACCCAatcctctaacctactcctcactgaaaacgacaatagaaaacatgataatttttt
gi|9 : CATTCCATAAA-GAAAATCAAGATTTATC-TTACAGTTT--AG-TCA-GAAAACCACCAAAAAACAGATAGAACAT-C-----GG-TG---A--A-AAAAA-GTC-AGAA---AGCAAAAGTGTG-TTTCTTTTAGATTG-TT-G-TTTGTAAT----AAAATTCT-TT-AAAAAACCGT--TTTATCCAGGA-------ACTGTCA----AA--TCAGAAGTTCTATTGCTTGTTTA-CAATATG-GTCATGTCAACAT--------------------ACGTTTTATCA----AATCGT-C---NNNNNN-NNNNNNNNNNNNNNNNNNNN-NNNNN-NNN-------------NNNNN-NNNNNNNNNNNNNNNNNNNNNNNNGAT-TTTT-CA-AA-GAATC-AA--TAGG-GTT---TTC-----ACTTTAGATAA-CCCATTACACCCA
blockSeqs : ATGATCTAT A AGA A A G T A CTGTATACA T TGTAAA G GC . C . T G T T TATCAG . . C A . AT A AC T T A T TTA A A . . G . . A A T G A TG G A G TT C G A ACCAGTA . ATG TA T T A TTT A GC T C TCAA . G CTTT C CC CG CGGGAAA TAT TT A G GTG GGAATACATGTATAAAATAT CCCCC . TTT C A N . CATTTA G GCTCC C N N TAGT AT C C AT T TG T TCA ACTT C
blockSeqs : . A AGA A T . T A CTGTATACA T A G GC . C . A G T T T . . C . . C . AC . . . . . . . . . . . . . A . . . A . G . . . . . C . A . . . . . A GT . C TTGT . G TTA C . . . TA T C . TG G G . TTT . N C . NNNNN . NNNNN N C C NNNN T . . A . . . . . .
blockSeqs : . G A A T . T . TACATT . A A . . . . T . T T T . . C . . T . AC . . . . . . . . . . . . . G . . . T . A . . . . . T . A . . . . . . GT . C AGG . G TTT C . . . TA T G . TG . G . TTT . T C . TTTAA . TCTTG C C C TGAC T . . C . . . . . .
blockSeqs : . T A A T . T . TTTCAT . . A . . . . T . T T T . . C . . T . AC . . . . . . . . . . . . . T . . . T . A . . . . . A . A . . . . . . C . C AGA . T TT C . . . TA T G . GT . G . N . T C . CATTG . TCTTC A C C TGAC . . . C . . . . . .
blockSeqs : . T T A T . T . TACAT . . A . . . . T . T T T . . T . . T . A . . . . . . . . . . . . . A . . . T . G . . . . . A . A . . . . . . C . A TCG . G TT G . . . TA T G . GT . A . . . T A . NNNNN . NNNNN A T G TGAC . . . A . . . . . .
blockSeqs : . T T A T . . . TATT . . A . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . T . A . . . . . T . A . . . . . . G . T TCG . G T A . . . TA T C . TG . A . . . A N . NNNNN . NNNNN N N N NNNN . . . A . . . . . .
blockSeqs : . A G . A . . . TATT . . G . . . . . . . . . . . . . . . . . C . G . . . . . . C . G AGG . G T A . . . . . A . GG . . N N . TTAA . . N N N NNNN . . . A . . . . . .
blockSeqs : . G . . T . . . TGTT . . T . . . . . . . . . . C . A . . . . . . C . T TCA . A T A . . . . . C . . N . . TTAA . . . . . . . . . A . . . . . .
blockSeqs : . . . . . . A . . . . . . G . . TTG . . C A . . .
blockSeqs : . . . . . . . . C . . A . .
blockSeqs : . . . . . . .
blockSeqCons : N** *** T***** **** ***** T* AC ** T* NCG*** **** TT*** TA* TTT CNTNG************** TGAC A* ** *** *****
originalCons : ATACATAATGTCAAT---------TTTNTACATA--TATTTAGATGT-CTTGTTTCTTG-TATA-TGT-A-T---GTG-TAA------CTCGGCAT--TG---T-AGC-ATGGATGTTTTGTC-AGAATATATTGTAAACAATATTCAGTGTTGCATGAATTTATTTCATCACT-----ATCAGA-TCAGAAGTGTATTATCGTAAGGAGACTTT----AACGAATACTTTAAATGTTAGATTTCGTCGTTATTCTGT-AAAGA-----CATCTTTACCGGAAAGTA-TTATAAACGCAGGAA-TACTTTTCCGTAAAGAAT-ACTTTAT-AAT-GAT-GACATT---AAAAT-CTTTCATTCTGAA-GAG-AT-CATTC--TATGCTCTTTACA-TAATT-ATAC-AAGATATCAACAG-T-GAG-AAAACTAAT-TGTTTACATTCCATAAA-GAAAGTCGAGGTTTATC-TTAAAGTTT--AG-TCA-GAAAACCACCAAAA-ACAGATAGAACAT-C-----GG-TGA--A--A-AAAAA-ATC-AGAA---AGC-AAAGCGTG-TTTCTTTTAGATCG-TC-G-TTTGTAAT----AGAATTC--TT-AAANAA--GT--TTTATGCAGGA-------ACTGTCATA-TAA-TTCAGAAGTTGTATTGCTTGATAA-CAATGTGTGTCATGTCAACAT--------------------ACGCTTTATCG----AATCGT-CTTTTCGGGT-CACCTGTGTAANCTCGGGTG-AGGCA-TTA-------------CAATT-GTCTTCGTCCTGTGCCCTTGACCGGA--TTTT-CA-AA-GAATC-GA--TAGG-GTT---TTC-----ACTTTAGGTAG-CCCACTACACCCAG
finalCons : ATACATAATGTCAAT---------TTTNTACATN--TATTTAGATGT-CTTGTTTCTTG-TATA-TGT-A-T---GTG-TAA------CTCGGCAT--TG---T-AGC-ATGGATGTTTTGTC-AGAATATATTGTAAACAATATTCAGTGTTGCATGAATTTATTTCATCACT-----ATCAGA-TCAGAAGTGTATTATCGTAAGGAGACTTT----AACGAATACTTTAAATGTTAGATTTCGTCGTTATTCTGT-AAAGA-----CATCTTTACCGGAAAGTAT-TATAAACGCAGGAA-TACTTTTCCGTAAAGAAT-ACTTTAT-AAT-GAT-GACATT---AAAAT-CTTTCATTCTGAA-GAG-AT-CATTC--TATGCTCTTTACA-TAATT-ATAC-AAGATATCAACAG-T-GAG-AAAACTAAT-TGTTTACATTCCATAAA-GAAAGTCGAGGTTTATC-TTAAAGTTT--AG-TCA-GAAAACCACCAAAA-ACAGATAGAACAT-C-----GG-TGA--A--A-AAAAA-ATC-AGAA---AGC-AAAGCGTG-TTTCTTTTAGATCGNCG---TTTGTAAT----AGAATTCTT---AAANAA--GT--TTTATGCAGGA-------ACTGTCATA-TAA-TTCAGAAGTTGTATTGCTTGATAA-CAATGTGTGTCATGTCAACAT--------------------ACGCTTTATCG----AATCGT-CTTTTCGGGT-CACCTGTGTAANCTCGGGTG-AGGCNTNG--------------CAATT-GTCTTCGTCCTGTGCCCTTGACCGGA--TTTT-CA-AA-GAATC-GA--TAGG-GTT---TTC-----ACTTTAGGTAG-CCCACTACACCCAG
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GAAGAAACCAGTGAAGAGTCCGAGTCGTATGAGTTTTAGTCTGAAGAAACCAGTGAAGACCTGGAGTCTGATGAAAACAGTGAATGCCTGACCAGTGAAGAGTTTAAGTCTGAAGAAAACATAGAGTGTTAATTCTGTAGAATTGTAAGGGGATGTTCCTGAATCCTGTCGTCAGTGGTGTCCCAGAATTTTCTAGTGTGACAGTCAAAATTTAAAAGTGGAATTAGAATTAGATATTTTTCAAACTAAGCATAGGTGACTTTAACCTTACAAAATGTTTTCAAATGTTATAGTGACGCAGTTTACTTTTCGTTTCTTCTTTGAACACGGCTGGAAATCAATAAAAATATATGTTAGAAAAAGATTAATAAGGACCTAAAATGTGAGGGGGGGGAAGAGGAATCTGACCCTGATGACAAGGACACTCCTCAGTCAAAATCAGAATGCTACCGTGAAGCGGTGCCCTTTAAACTCTTGTGCAATGAGTTATG
Unaligned ( gi|7 ): AATAAAAACAAAATATATTTTTCATATAGTACCTCTTTTATTTGACAGATTGATCACCTTTCCAGTTTTGTTAACCCTTCAGATGATCCAAACGGAGATTATAGGATGAAAAAAAGTTTCAAACTCTGAGAAAGATCTGGAACCTGGAACAGATCTAGAGATAAGTGAAGAGTCTGAGTATGAAGAATATTGTGAGGAACTGCAGTCTGATGAAAGTAGTGAGGAGCTGCAGTCTGATGAAAACAGTGAAAAGATGAGATATGATTCCTTGGAAAGTGATGAGAGGAATACTGAAGACAACAGAGTGTTAATTCTGGAGAATCGTAGGAGGATGTCCCAGAATCCTGTTGTCAACGCTGTCCCAGAATTTGATTTAAAATTGAATCGGGAATTAGATAGTGACAATGAAATTCGTCAGTCAAAATGAGAATGCTGCCATAAAGCGCTGATTTTAGAAACTCTCGTACAG
Unaligned ( gi|10 ): CCTGAAATCCTGTCGTCAGTGCATGTCTTCCAGAATCTTTGTCGTGACCGATCAAAGGTGTCAAGATTGTGAAAAAGTGGAATAAGAAATTAGAGTTTATTATTGCTGAAACTAAACAATTAGGTGACTTTAATCTTACCAAAATTTGTTTTTCAACGTCTCAATCTAAAACGTTGGCGTCTAGTAGTGGCACCCAGCTACGTTTTCTATCTGGAACCATCATCAGAACACGGCCTGCAAATATCAATAAAAAAAATTTAATTGTCTTTTTTACACAAGATCAAGTTAAGAGTCCTAACAAAGTAGAAGGGAAGACGAAAGGAATCTGACCCT
Unaligned ( gi|14 ): TATACCTGTTTTATTCTAGTGATTAATCACCTTTCTTGTTTTGTCAATCCTTCAGATAATCCAGACGGAAATGAGAGGATCAAAGAAGCTTCTACATGTAGTTATGAAGAAGTTCAGGAATCTGGAAGAGGACTGGAAACCAGTGAAGAGTCTGAGTATGAAGAAACCAGTGAAGACCTGGAGTCTGAAAAAACCAGTGAAAAGTCCGAGTCCTATGAGTCTGAGTCTGAAGAAACCCATGAAAACCTGAAGTGTGATGAAAATAGTGAA
Unaligned ( gi|15 ): CATTTTTGTTAATTCTTCAGATAAATCCAGGAGGAAGATGAAGCCTGAGGATACAGAAAACAGAAGGTTCAAAAGTCCTGAATTGGAAGATTTGGACCTTTTGATATGAAGAAAAAATCTACCAGAACCAGTCGAAAAAGTAAAGGACGACCGTTAGTATTGAAGAATATTTATTAAGTGAGGAACTAACAGTCTGATTTGAAGTAGTGGAGAATGTCCGTGATGAGGCAACTGCTTGAAGAAAACGGAGAAAGATA
Unaligned ( gi|16 ): CATTTTTGTTAATTCTTCAGATAAATCCAGGAGGAAGATGAAGCCTGAGGATACAGAAAACAGAAGGTTCAAAAGTCCTGAATTGGAAGATTTGGACCTTTTGATATGAAGAAAAAATCTACCAGAACCAGTCGAAAAAGTAAAGGACGACCGTTAGTATTGAAGAATATTTATTAAGTGAGGAACTAACAGTCTGATTTGAAGTAGTGGAGAATGTCCGTGATGAGGCAACTGCTTGAAGAAAACGGAGAAAGATA
Unaligned ( gi|19 ): TATATGTTTTTACAAGATTAGTAAGGACCAAAAATGTGACGGGAAAAACAAGGATTCTGACCTTGATGACAAGGACACTCCTCAATCAAAATCAGAATGCTGCTGTGAAGCGGTACGCTTTAATCTCTTGTGCAATCGATTTTGATAAACAACATATTTACCTATACATATATTATTAATAATAATTTTATACATA
Unaligned ( gi|20 ): AATTTGAGTGATTTGATCACCTTGTTTTCGTTAATCCGCAGGATTTAACCAGATGGACAATTGGGACACGGCGAGGAGAATCACAGAAGCTTCTAGTTATGAGGAAGTTCAGGAATCTGGAACAGGATCTGGAAAGCACTGAAAGAGTCTTGAGTCTGAAGAAACCAGTGAAGAGTCCGAT
Unaligned ( gi|21 ): TGTTTTATTTGAGTGATTGATCACCTTCCTTATTTTGTTAATCCTAATTCAGATAATCCAGACGGAGGTGTGCAGATCACAGAAGCTTCTAGTTATGAGGAAGTTCAGGAATCTGGAGCAGAACTGGAAACCATTGAAGAGTCCGAGTATTAAGAAACCAGTGAAGACCTGGAGTCTGA
Unaligned ( gi|29 ): GATGAATACAATGATGATTCCCGAGTCCGAGTCCGAGTCTGAAGAAACCCTTGAAGACTTTGAGTCTGATGAACACAGTGATTAGTCCGAGTCCGAAGAGTCCGAGTATGAAGA
Unaligned ( gi|33 ): GAAGCGCTGCTCTTTTAACTTTTGTGCAATTGATTTTGATGAACAACATATTCACCTATATATATGCTGTGCATTTTATACATAT
Unaligned ( gi|37 ): TTAATAAAAACGAACTATATTTTCATACACATAGCTGTACTATATA
Alignments
lowQualScore : 111111111 333 1 22222222222 222222 11 1 111111 1111 11111 1 111 11 1 1111111 11 111111 11111 1111111 111 44444444444444444444 11111 222 3333333333333333333 11111 11 11 111 22222
lowQualScore : 777777777 1 000 2 4 2 8 44444444444 8 111111 1 22 777 8 4 6 0 3 1 555555 5 0 4444 1 6 44444 88 5 55 5 1 5 5 000 5 5 5 5 11 5 5 5 0 5 5 5 77 5 6 4 0 55 8 4 0 4 6666666 3 555 44 3 3 3 0 555 7 99 3 4 333333 7777 2 88888 1 55 55 4444444 888 66 1 4 444 55555555555555555555 22222 5 666 4 1 7 4 2222222222222222222 4 00000 4 2 1 8888 55 4 4 66 4 00 4 222 00000 4
lowQualScore : ......... . ... . . . . ........... . ...... . .. ... . . . . . . ...... . . .... . . ..... .. . .. . . . . ... . . . . .. . . . . . . . .. . . . . .. . . . . ....... . ... .. . . . . ... . .. . . ...... .... . ..... . .. .. ....... ... .. . . ... .................... ..... . ... . . . . ................... . ..... . . . .... .. . . .. . .. . ... ..... .
lowQualScore : 888888888 0 666 2 4 8 9 00000000000 9 777777 7 22 888 9 4 5 0 2 9 777777 7 1 2222 0 7 33333 33 7 77 7 4 7 7 000 7 0 0 0 99 7 7 7 9 7 7 7 44 7 3 0 8 55 0 0 8 0 3333333 3 000 66 3 3 3 2 888 3 33 6 3 333333 7777 8 11111 0 55 55 4444444 000 33 9 0 666 66666666666666666666 66666 7 444 4 0 6 4 6666666666666666666 4 11111 8 8 0 6666 00 4 4 22 4 66 4 222 66666 4
consensus : ATACATAATGTCAAT---------TTTNTACAT---TATTTAGATGT-CTTGTTTCTTG-TATA-TGT-A-T---GTG-TAA------CTCGGCAT--TG---T-AGC-ATGGATGTTTTGTC-AGAATATATTGTAAACAATATTCAGTGTTGCATGAATTTATTTCATCACT-----ATCAGA-TCAGAAGTGTATTATCGTAAGGAGACTTT----AACGAATACTTTAAATGTTAGATTTCGTCGTTATTCTGT-AAAGA-----CATCTTTACCGGAAAGTA-TTATAAACGCAGGAA-TACTTTTCCGTAAAGAAT-ACTTTAT-AAT-GAT-GACATT---AAAAT-CTTTCATTCTGAA-GAG-AT-CATTC--TATGCTCTTTACA-TAATT-ATAC-AAGATATCAACAG-T-GAG-AAAACTAAT-TGTTTACATTCCATAAA-GAAAGTCGAGGTTTATC-TTAAAGTTT--AG-TCA-GAAAACCACCAAAA-ACAGATAGAACAT-C-----GG-TGA--A--A-AAAAA-ATC-AGAA---AGC-AAAGCGTG-TTTCTTTTAGATCG-TC-G-TTTGTAAT----AGAATTC--TT-AAANAA--GT--TTTATGCAGGA-------ACTGTCATA-TAA-TTCAGAAGTTGTATTGCTTGATAA-CAATGTGTGTCATGTCAACAT--------------------ACGCTTTATCG----AATCGT-CTTTTCGGGT-CACCTGTGTAANCTCGGGTG-AGGC-TT-------------AACAATT-GTCTTCGTCCTGTGCCCTTGACCGGA--TTTT-CA-AA-GAATC-GA--TAGG-GTT---TTC-----ACTTTAGGTAG-CCCACTACACCCAG
Reference ( family-3002 ) : ATACATAATGTCAAT---------TTTNTACATN--TATTTAGATGT-CTTGTTTCTTG-TATA-TGT-A-T---GTG-TAA------CTCGGCAT--TG---T-AGC-ATGGATGTTTTGTC-AGAATATATTGTAAACAATATTCAGTGTTGCATGAATTTATTTCATCACT-----ATCAGA-TCAGAAGTGTATTATCGTAAGGAGACTTT----AACGAATACTTTAAATGTTAGATTTCGTCGTTATTCTGT-AAAGA-----CATCTTTACCGGAAAGTA-TTATAAACGCAGGAA-TACTTTTCCGTAAAGAAT-ACTTTAT-AAT-GAT-GACATT---AAAAT-CTTTCATTCTGAA-GAG-AT-CATTC--TATGCTCTTTACA-TAATT-ATAC-AAGATATCAACAG-T-GAG-AAAACTAAT-TGTTTACATTCCATAAA-GAAAGTCGAGGTTTATC-TTAAAGTTT--AG-TCA-GAAAACCACCAAAA-ACAGATAGAACAT-C-----GG-TGA--A--A-AAAAA-ATC-AGAA---AGC-AAAGCGTG-TTTCTTTTAGATCG-NC-G-TTTGTAAT----AGAATTC--TT-AAANAA--GT--TTTATGCAGGA-------ACTGTCATA-TAA-TTCAGAAGTTGTATTGCTTGATAA-CAATGTGTGTCATGTCAACAT--------------------ACGCTTTATCG----AATCGT-CTTTTCGGGT-CACCTGTGTAANCTCGGGTG-AGGC-NT-------------NGCAATT-GTCTTCGTCCTGTGCCCTTGACCGGA--TTTT-CA-AA-GAATC-GA--TAGG-GTT---TTC-----ACTTTAGGTAG-CCCACTACACCCAG
gi|1 : ACAATGTCGAT---------TTTG-ACAT---TATTTAGA-GT-CTTGTT-CTTG-TA-A--GC-A-T---GT--TAA------CTCAGCAT--TGCAGT-AGCGATGAATATTT-GTC-AGAATATACTATAAAC--TATTCAGTGTTGCATGAATT-ATTTCTCCAC------ATCAGAATCAGAGATATAT---CGTAAAGAGACTTTTTTTAA--AATACTTTAAATGTTAAATTTCGTCGTTATTATGT-AAAGACATATCATCTTTACCGGAAAGTA--TAT-AACGCA-GAA-T-CTTTACCATAAAGAAT-ACTTTATAAAT-GAT--ACAT-----AAAT-CTTTCATTCTAAA-AAGAATACACTCTGTATGCTC-TTACAGTAATTGATAC-AAGATATCAAC-G-T-GA--AGAAC-AA--TGTTCACATTCCTTAAC-GAAAGTC-AAGTTTATC-TTAAAG-TT--AGTTCA-GAAAACCACCAAAA-AC-----GAACAT-A-----GGCTGA--A--A-AAAAA-AT--AGAA---AGC-AAA-CATG---TCCTTTAGATCGAGC-T-TGTGTAATTGAAAGAAT----CT-AAACAA--GT--TTTATGC-GGA-------AT----------A-TTC-----TTGGAT------AAAA-CAAT-TGT-TCATGTCAACAT--------------------A--CTTT-TCA----AATCGTGC---GCAGGT-CACCTG-GTAACCT-GGGTGAAGGC-ATTACAAATGGACGAAGCAATT-GTCTTCGGACTGTGTCTT----CGGA--TTTT-CA-A---AATC-AAG-TCGG-GTTA--TTCACATTACTTTAGGTAG-CTCACTACACCCAG
gi|11 : gtaaacgagtgaagagtccgagtacaaagaaaacggtgtgaaactgaggtctggaaggggaaaccacagagaatgtttaattctggaaaatgtagaggatttcgctgaatcctgttcgtctgtggtttctcggaatctatgtcaaatttaaaagtgaaatgaatcgatattgacgaaggaacgttcgtcagttcagttcaagaatgagaatgctaccatgagtatagcgcgctgatttgaaactctcgtgcaacgtcgattatggtgatcgaaaaatcagatttataaaagtctTT-TTGAAGTTTTTAG-TCA-GAAAACCACCAAAA-ACAGATAGAACAT-C-----AG-TGATGA--A-AAAAA-ATCAAGAATTTAGC-AAA-CGTGTTTTCTTTTAGAT-G-TCAA-TTTGT-AT----A-AATTC--TTAAAACAC--GT--TTTATG-AGGA-------ACTGTCATATTAATTTCAGAAGTTATATTGCTTGATAAGCAATGT-TGACAT-TGAACACG-------------------ACGCTTTATCG----AATCGT-CTTTTCAGGTCCACCAGTGTAAACT--GGTG-AGGCATT-------------TACAATT-GGCTCCGTCCTGTG----TAGTCGGAATTTTT-CA-GATGAATC-GG--TAGG-GGT---TTCACTT-ACTTTAGATAGCCCCACTACACC
gi|12 : TTATC-TCAAAGTTT--AG-TCA-GAAAACCACCAAGA-AGAGAT--------T-----GG-TGA--A--A-AAAAATATC-AAAG---AGC-AAA-CGTG-TTTCTTTTAGATCG-AG-G-TTTGTAAT----AGAATT---TT-AAACAC--GT--TTTATGCAGGA-------ACTGCCATA-TAA-TTCAGAAGTTCTATTGCTTGATAA-CAATGT-TGTCATGAACACAT--------------------ACGCTTTATCG----AATCGT-C--NNNNNNN-NNNNNNNNNNNNNNNNNNNN-NNNN-NN-------------NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNGAG--TTTT-CA-AA-GAATCTGATGTATG-GTT---TTC-----ACTTTAGATAG-CCCACTACACCCA
gi|13 : cagaaaanG-TGA--A--A-GAAAG-ATC-A-AA---AGC-AAAG-ATG-TTTCT-------------A-TTTGAAAT----AGAATTC--T--AAACAA--GT--TTTATGCAAGACGGGAAAAATGTCATA-TAA-TTCAGAAGCTGTATTGCTTGATAA-CAATGTGT-TCATGTCAACATGGAATACATGTATAAAATATACATTTTATCCCCCCAATCGT-CTTTTCGGGT-CACTTGTGTAATTTCGGGTG-AGGT-TT-------------AACAATTGGTCTTGGTCCTGTGCCCTTGACCGGA--TTTT-TACAC-AAATC-AA--AAGC-GTT---CTC-----ATTTTAGGTAG-TCCACTACACCAAGt
gi|17 : ATACATAATGTCAATATGATCTATTTTATACATAGATATTTAGAAGT-CTTGTTTCTTG-TATA-TAT---T---GTGTTAA------CTCGGCAT--TG---T-AGC-ATGAATATTTTGTC-AGAATATATTGTAAACAGCATTCAGTGTTGCATGAATTTATTTCATCTCT-----CTCAGA-TCAGAAGTATATTATTGTAAGG
gi|18 : gcactggttttgaaactctcgtgcaatcagttatggtgaaaaacagatttatataagtAACGCAGAAA-C---TTTCCGTAAAGAATTACTTTATTAATAGATTGACACT---AAAAT-CTTTCATTCTGAAAGAG-AT-CATTCG-TATGCTCTTTACA-TAATG-ATAC-AAGATATCAACAGTT-GAG-AAAACTAATGGGTTTACATTCCATAAAGGAAAGTCAAGATTTAGC-TTAAAGTTT--AGCTCAGGAAAACCACC-AAA-ACAGACAGAACA
gi|2 : ATAAT---AAT---------TTTATACAT----ATTTGTATGT-CTTGTTTCTTG-TATA-TAT---T---GTG-T---------TAGGCAT--TG---T-AGC-ATGGAAGTTTCGTC-AGAATATATTATAAACAATGTTCAGTGTTGCATGAATTTATTTCATCA-----------------GAAGTGTATTATCGTAAGAAGACTTT----AACGAATACTTTAAATGTTAGATTTCATCGTTATTTTGT-AAAGA-----CATCTTTACCAGAAAGTA-CTATAAACGCAGGAA-TACTTTTCCGTAAGAAAT-ACTTTAT-AAT-GAT-GACATT---AAAAT-CTCTCATTTTAAA-GAG-AC-CTTTC--TATGCTCTTTACA-TAATT-AAAC-AAGATATCAACAG-T-GGGAAAAAATAAA-TGTTTACATTCGAAAAA-GGAAGTCGAAGTTTCTTGTTAAAA-TT--A----A-GAAAACCATCAAAA-
gi|22 : cagtgaagaagtttaagtgtgaagaaaacatagagtgttaattctgtagaatttaggaggatgttcctgaatcctgtcatcagtgctgtcttcagagatttctagtgtccagatttaaatgttgaacaagaattaaatattttccaaaccaagcataggtgactttaatattacattaatgttttcaaatgttatagtgagaagtttacttacgtttctggaatctcaaacacggcgctaataataaaaaaatatataatttttgataatatgtttaatggcaataaacgatataagacctgcaattaggaaaaaaaagcgaggaatctgaccctgatgacaaggacactcctcagtcaaaccacaatgcttggccgtggagcatgctttaaactcttgtgcaatcgattttgatgaacaacataaccttataatatatatannnnnnnnnnnnnnnnnnnnnnnnnatgtacccacatattgttaAGATTTATC-TTAAAGTTT--AG-TCA-GAAAACCACCAAAA-ATAGATAGAACAT-A-----GG-TGA--A--A-AAAAT-ATC-AAAG---AGC-AAA-CGTG-TTTCTTTTAGTTCA-AG-A-TTTGTAAT----AGAATTC---T-AAACAA--GT--TTCATGCAGGA-------ACTGTCCTA-TAA-TTCAGAAGTCGTTTTGCTTGATAC-CAAT
gi|23 : TGAA-GAG-AT-CATTT--TATGCTCTTTACA-TAAGT-ATAC-AAGATATCAACGG-T-AAG-AAAACTAAT-TGCTTACATTCCATAAA-GAAAGTCAAGGTTTATC-TCAAAGTTT--AG-TCA-GAAAACCACC-AAA-ACAGATAAAACAT-A-----GG-TG------A-AAAAA-ATC-AGAA---
gi|24 : GA-----CATCTTTACCAGAA-GTAATTATAAACGCAGGAAATA-TTTTCTGTAAAGAAT-GCTT-AT-AAT-GAT-GACATT---AAAATACTTTC-TTCTGAA-GAG-AT-CATTC--TATTCTCTTTACA-TATTT-ATACAAAGATGTCAAC-G-TGGAG-AAAACTAAT-TGTTTA
gi|25 : ATAATTT--AT---------TTTGTACAA----ATTTAGATGT-CTTGTTTCTTG-TATA-TAC-ATT---GTGTTAA------CTCAGCAT--TG---T-AGC-A
gi|26 : tttaaactcttttgcaattgactatggtgaacagcagatttagtctcatttacctatatatatagatatttTGTCAAT---------TATTTACATT--TATTTAGATGT-CTTGTT-CTTGATATACTGT-A-TACAGTG-TAAA-----CTCAGTATGCTG---TCAGC-ATGGA-GTTTTGTCGAGAA-ATATTGTAAACAATATTTAGTGTTGCA-GAAT
gi|27 : atcatTGTCAAT---------TATTTACATT--TATTTAGATGT-CTTGTT-CTTGATATACTGT-A-TACAGTG-TAAA-----CTCAGTATGCTG---TCAGC-ATGGA-GTTTTGTCGAGAA-ATATTGTAAACAATATTTAGTGTTGCA-GAAT
gi|28 : atcat-----GG-TGA--A--A-ATAAA--TC-AAAA---AGC-AA-GCGTG-TTTCTTTTAGATCG-TC-G-TTTGTAAT----ATAATTC--TT-AAAGAA--GT--TTTATGCAGGG-------ACTGTCATA-TAA-TTCAGAAGTCGTTTTGCTTGATAA-CAAT
gi|3 : taATATATAATGTCAAT---------TATTTACAT---TATTTAGATGT-CTTGTT-CTTG-TATA-TAC-A-T---GTA-TAATGTAAACTCAGTAT--TG---T-AGC-ATGGATGTTTTGTC-AGAATATATTGTAAACAATATTTAGTGTTGCATGAGTTTATTTCATCACT-----ATCAGA-TCAGAAGTGTATTATCGTAAGGAGACTTT----AACGAATCCTTTAAATGTTAGATTTCGTCGTGATTCTGT-AAAGA-----CATCTATACCAGAGAGTA-TTATAAACGCAGGAA-TACTTTTCCGTTAAGAAT-ACTTTAT-AAT-GAT-GACACT---AAAAT-CTTTCATTCTGAA-GAG-AT-CATTC--TATTCTCTTTACA-T-ATT-GTAC-ATGATGTCAACTG-T-GAG-AAAACTAAT-TGTTTA
gi|30 : ttgttaattcttcagataatccagacggagatgagaggatcacagaaggttcaagtcctatggaagatttggaacctgaaacaaatctacagaccagtgaaaagtccgagtatgaagaatatagtgaggaactacagtnnnnnncaccctgttgtaaggggtgtgtgtgtaaaaggcaatacgaagaaanaagtagtgagaaactgtccagtgatgagagcaacgctgaagaaaacggagaaatgcttgattctgtaggaggatgtaaatgaatcctgttgtcagtggtgcttccgaattttccagtgttaagatttaaaagtggaatgtgatttagatattgaccaggacgttcctcagtcagagtatgtttagctatgaagcgctgattttgaaactcgtgcagtcnnnnnnngaagaatttttgaaatgaaaaaaatatgatggaatcacattatcaatgnctatggtgaaaaacagatttacataagtGGGT-CATCTGTGTAATCTCGGGTG-AGG--TT-------------AATAATT-G-----GTCA-ATGCCCTTGACCGAA--TTTT-CC-AC-AAATC-GA--TAGC-GTT---GTC-----ACTTTAGGTAG-CCAACGACA
gi|31 : TTGCATGAATGTATTTCATCACT-----ATCAGA-TCAGAAGGGTATTATCATAAGGAGACTTT----AACGAATGCTTTAAGTGATAGATATCGTCGTTATTCTGT-AAAGA-----Caca
gi|32 : TTGGGT-CATCTGTGTAATCTCGGGTG-ATG--TT-------------AACAATT-G-----GTC-TGTGCCCTTGACCGGA--TTTTCCA-CA-AAAT--GA--TAGC-GTT---CTC-----ACTTTAGGTAG-CCAACGAC
gi|34 : T-T-----GG-TGA--ATAA-AAAAA-ATC-ATAA---AGC-AAA-CGTG-TTTCTTTTAGATCG-TC-G-TTTATAAT----AGAATTC---T-AAAAAA--GT--TTTATGCAGG
gi|35 : G-TGG--A--A-AAAGG-ATC-AGAA---AGC-AAAG-ATG-TTTCTATTAGGTAG-AG-G-TTTGAAAT----AGAATT
gi|36 : TGATAA-CAATGTGT-TCATTTCAACAT--------------------ataaac
gi|4 : ATACATTATGTCAAT---------TTTATACATAGATATTCAGAAGT-CTTGTTTCTTG-TATA-TGT---T---GTG-TAA------CTCGGCAT--TG---T-AGC-ATGAATATTTTGTC-AGAATATATTGTAAACAAGATTTAGTGTTGCATGGATTTATTTCATCGCT-----ATCAGG-TCAGAAGTGTATTATCGTAAGGGGACTTT----AACGAATGCTTTAAATGTTAGATTTCGTCGTTATTCTGT-AAAGA-----CATCTTT-CCGGAAAGTA-TTATAAACGCAGGAA-TACTTTTCCGTAAAGAAT-ACTTTAT-AAT-GAT-GACATT---AAAAT-CTTTCATTCCGAA-GAG-AT-CATTC--CATGCTCTTTACA-TAATT-ACAC--AGATATCAACAG-T-GAG-AAAACTAAT-TGTTTACATTCCATAAA-GAAAGTCAAGATTTATC-TTAAAGTTT--AG-TAA-GAAAACCACCAAAA-ACAGATAGAACAT-C-----GG-TGA--A--A-AAAAA-TTC-AGAA---AGCAAAAGTGTG-TTTCTTTTAGATTG-TT-GTTTTGTAAT----A-AATTCCTTT-AAAAAA--ACCGTTTATCCAGGA-------ACTGTCA----AA--TCAGAAGTTCTATTGCTTGATTA-CAATGTGTGTCATGTCAACAT--------------------ACGTTTTATCG----AATCGT-CTTTTCAGGG-CACCTGTGTAAAGTATGATG-AGGC-AT-------------TGCAATT-GTCTTCGTCATGTGTCGT----CGGA--TTTT-TA-AA-GAATC-AA--TAGG-GTT---TTC-----ACTTTAGATAA-CCCATTACACCCAGggactacatgtgtaaaatgta
gi|5 : ATGCATAATGTCAAT---------TTTGTAGATG--C--TTAGATGTGCGT-TTTATTG-CATA-TTTCA-T---GTG--AA------CTTTGTCT--TG---T-TAT-ATGAATCTTTTGCC-AGAATATATTGTGAACAATATTCAGTGTTGCATGAATTTATTTCATCACTATCAGATCAGA-TCAGAAGTGTATCAT-GTAAGGAGACTTT----AATGAATACTTTAAATGTTAGATGTTGTCATTATTCTGTAAAAGA-----CATCTTTACCGGAAAGTA-TAATAAACTGAGAAA-TACTTTTCCGTAAAGAAT-ACTTTAA-AAT-GAT-GACTTTTTAAAAAT-CTTTCATTTTAAA-GAG-AT-CATTG--TATGCTC
gi|8 : cagtgaagagatcaagtctgaagaaaagcaatctagagattcttgtaggagtgtgaaaaaatttagtctgaggaagatagtgaggaatctgacccagataacattaggacattcctcaatcaaaatcagaatctgaccctggtaacattaggacattcctcaatcaaaatcagcatgctgccatgaagtgctgcaatcggttatggtgaaaaatatatttatactagtatgttAA-GAAAGTCGAGGTTTATC-TTGAAGTTT--AG-TCA-GAAAACCACCAAAA-ACAGATAGAACATACCAGTAGG-TGA--A--ATAAAAA-ATC-AGAA---ATC-AAA-CGTG-TTTCTCTTAGATGG-TC-A-TTTGTAAT----AGAAATC---C-AAAAAA--GT--TTTGTGCAGGA-------ACTGTTATA-TAA-TTCAGAAGTTATATTGCTTGATAA-CAATGT-TGACATGAACACAT--------------------ACGCTTTATCA----AATCGT-C---NNNNNN-NNNNNNNNNNNNNNNNNNNN-NNNN-NN-------------NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNGAT-TTTT-TA-AA-GAATC-GA--TAAGTGTTTCATTT-----ACTTTAGATAG-CCCACTACACCCAatcctctaacctactcctcactgaaaacgacaatagaaaacatgataatttttt
gi|9 : CATTCCATAAA-GAAAATCAAGATTTATC-TTACAGTTT--AG-TCA-GAAAACCACCAAAAAACAGATAGAACAT-C-----GG-TG---A--A-AAAAA-GTC-AGAA---AGCAAAAGTGTG-TTTCTTTTAGATTG-TT-G-TTTGTAAT----AAAATTCT-TT-AAAAAACCGT--TTTATCCAGGA-------ACTGTCA----AA--TCAGAAGTTCTATTGCTTGTTTA-CAATATG-GTCATGTCAACAT--------------------ACGTTTTATCA----AATCGT-C---NNNNNN-NNNNNNNNNNNNNNNNNNNN-NNNN-NN-------------NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNGAT-TTTT-CA-AA-GAATC-AA--TAGG-GTT---TTC-----ACTTTAGATAA-CCCATTACACCCA
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GAAGAAACCAGTGAAGAGTCCGAGTCGTATGAGTTTTAGTCTGAAGAAACCAGTGAAGACCTGGAGTCTGATGAAAACAGTGAATGCCTGACCAGTGAAGAGTTTAAGTCTGAAGAAAACATAGAGTGTTAATTCTGTAGAATTGTAAGGGGATGTTCCTGAATCCTGTCGTCAGTGGTGTCCCAGAATTTTCTAGTGTGACAGTCAAAATTTAAAAGTGGAATTAGAATTAGATATTTTTCAAACTAAGCATAGGTGACTTTAACCTTACAAAATGTTTTCAAATGTTATAGTGACGCAGTTTACTTTTCGTTTCTTCTTTGAACACGGCTGGAAATCAATAAAAATATATGTTAGAAAAAGATTAATAAGGACCTAAAATGTGAGGGGGGGGAAGAGGAATCTGACCCTGATGACAAGGACACTCCTCAGTCAAAATCAGAATGCTACCGTGAAGCGGTGCCCTTTAAACTCTTGTGCAATGAGTTATG
Unaligned ( gi|7 ): AATAAAAACAAAATATATTTTTCATATAGTACCTCTTTTATTTGACAGATTGATCACCTTTCCAGTTTTGTTAACCCTTCAGATGATCCAAACGGAGATTATAGGATGAAAAAAAGTTTCAAACTCTGAGAAAGATCTGGAACCTGGAACAGATCTAGAGATAAGTGAAGAGTCTGAGTATGAAGAATATTGTGAGGAACTGCAGTCTGATGAAAGTAGTGAGGAGCTGCAGTCTGATGAAAACAGTGAAAAGATGAGATATGATTCCTTGGAAAGTGATGAGAGGAATACTGAAGACAACAGAGTGTTAATTCTGGAGAATCGTAGGAGGATGTCCCAGAATCCTGTTGTCAACGCTGTCCCAGAATTTGATTTAAAATTGAATCGGGAATTAGATAGTGACAATGAAATTCGTCAGTCAAAATGAGAATGCTGCCATAAAGCGCTGATTTTAGAAACTCTCGTACAG
Unaligned ( gi|10 ): CCTGAAATCCTGTCGTCAGTGCATGTCTTCCAGAATCTTTGTCGTGACCGATCAAAGGTGTCAAGATTGTGAAAAAGTGGAATAAGAAATTAGAGTTTATTATTGCTGAAACTAAACAATTAGGTGACTTTAATCTTACCAAAATTTGTTTTTCAACGTCTCAATCTAAAACGTTGGCGTCTAGTAGTGGCACCCAGCTACGTTTTCTATCTGGAACCATCATCAGAACACGGCCTGCAAATATCAATAAAAAAAATTTAATTGTCTTTTTTACACAAGATCAAGTTAAGAGTCCTAACAAAGTAGAAGGGAAGACGAAAGGAATCTGACCCT
Unaligned ( gi|14 ): TATACCTGTTTTATTCTAGTGATTAATCACCTTTCTTGTTTTGTCAATCCTTCAGATAATCCAGACGGAAATGAGAGGATCAAAGAAGCTTCTACATGTAGTTATGAAGAAGTTCAGGAATCTGGAAGAGGACTGGAAACCAGTGAAGAGTCTGAGTATGAAGAAACCAGTGAAGACCTGGAGTCTGAAAAAACCAGTGAAAAGTCCGAGTCCTATGAGTCTGAGTCTGAAGAAACCCATGAAAACCTGAAGTGTGATGAAAATAGTGAA
Unaligned ( gi|15 ): CATTTTTGTTAATTCTTCAGATAAATCCAGGAGGAAGATGAAGCCTGAGGATACAGAAAACAGAAGGTTCAAAAGTCCTGAATTGGAAGATTTGGACCTTTTGATATGAAGAAAAAATCTACCAGAACCAGTCGAAAAAGTAAAGGACGACCGTTAGTATTGAAGAATATTTATTAAGTGAGGAACTAACAGTCTGATTTGAAGTAGTGGAGAATGTCCGTGATGAGGCAACTGCTTGAAGAAAACGGAGAAAGATA
Unaligned ( gi|16 ): CATTTTTGTTAATTCTTCAGATAAATCCAGGAGGAAGATGAAGCCTGAGGATACAGAAAACAGAAGGTTCAAAAGTCCTGAATTGGAAGATTTGGACCTTTTGATATGAAGAAAAAATCTACCAGAACCAGTCGAAAAAGTAAAGGACGACCGTTAGTATTGAAGAATATTTATTAAGTGAGGAACTAACAGTCTGATTTGAAGTAGTGGAGAATGTCCGTGATGAGGCAACTGCTTGAAGAAAACGGAGAAAGATA
Unaligned ( gi|19 ): TATATGTTTTTACAAGATTAGTAAGGACCAAAAATGTGACGGGAAAAACAAGGATTCTGACCTTGATGACAAGGACACTCCTCAATCAAAATCAGAATGCTGCTGTGAAGCGGTACGCTTTAATCTCTTGTGCAATCGATTTTGATAAACAACATATTTACCTATACATATATTATTAATAATAATTTTATACATA
Unaligned ( gi|20 ): AATTTGAGTGATTTGATCACCTTGTTTTCGTTAATCCGCAGGATTTAACCAGATGGACAATTGGGACACGGCGAGGAGAATCACAGAAGCTTCTAGTTATGAGGAAGTTCAGGAATCTGGAACAGGATCTGGAAAGCACTGAAAGAGTCTTGAGTCTGAAGAAACCAGTGAAGAGTCCGAT
Unaligned ( gi|21 ): TGTTTTATTTGAGTGATTGATCACCTTCCTTATTTTGTTAATCCTAATTCAGATAATCCAGACGGAGGTGTGCAGATCACAGAAGCTTCTAGTTATGAGGAAGTTCAGGAATCTGGAGCAGAACTGGAAACCATTGAAGAGTCCGAGTATTAAGAAACCAGTGAAGACCTGGAGTCTGA
Unaligned ( gi|29 ): GATGAATACAATGATGATTCCCGAGTCCGAGTCCGAGTCTGAAGAAACCCTTGAAGACTTTGAGTCTGATGAACACAGTGATTAGTCCGAGTCCGAAGAGTCCGAGTATGAAGA
Unaligned ( gi|33 ): GAAGCGCTGCTCTTTTAACTTTTGTGCAATTGATTTTGATGAACAACATATTCACCTATATATATGCTGTGCATTTTATACATAT
Unaligned ( gi|37 ): TTAATAAAAACGAACTATATTTTCATACACATAGCTGTACTATATA