lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2 1 55 000000000 1 55 55555 2 11 8888888888888888 1 2 33333 1 22 222 1 11 2 1 2222 333 1 22 999999999999999 4 2 22 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2 44444444 1 666666 333333 1 22 1 88888888888888888888888 1 1 3 22222 1 1 3333333 2222 1 11111 1 4444444444444 111111 11 1 66666666666666666 99999999999999999999999 4444444444444 2222222 1 33333 11 1 4444444444444 1 111 5555555555555555555 11 1 1 1 222 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22 4 8888888888888888 44444 8888888 666 4 4 222 1 444444444444 22 88888888888 2 22 2 2 1 333333333333 11 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111 22222 1111111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 4 44 2 1 1
lowQualScore : 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 7 55 222222222 7 55 22222 6 6 6 6 0 3 77 1111111111111111 5 999 2 0 4 77777 3 00 333 3 4 77 3 5 4444 4 444 1 22 000000000000000 0 0 77 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 99999999 55 6 7 4 666666 555555 3 9 7 00 3 55555555555555555555555 6 0 0 0 00000 0 0 0000000 2 1111 0 8 3 8 88888 6 8 8 6 3333333333333 8 8 8 111111 8 8 0 77 8 5 8 6 0 33333333333333333 3 99999999999999999999999 1111111111111 3 2222222 3 99999 44 0 5555555555555 0 444 0000000000000000000 3 99 0 5 5 000 3 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 0 5555555555555555 33333 6 0000000 111 6 0 0 3 111 2 5 222222222222 77 44444444444 0 4 6 22 6 6 3 555555555555 55 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 6 6 999999 6 77777 1 1111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 5 0 3 77 0 5 5
lowQualScore : .......................................................................................................................................................................................................................................................................................................................................................................................................................................................... . . .. ......... . .. ..... . . . . . . .. ................ . ... . . . ..... . .. ... . . .. . . .... . ... . .. ............... . . .. ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . ........ .. . . . ...... ...... . . . .. . ....................... . . . . ..... . . ....... . .... . . . . ..... . . . . ............. . . . ...... . . . .. . . . . . ................. . ....................... ............. . ....... . ..... .. . ............. . ... ................... . .. . . . ... . .................................................................................................................................................. .. . ................ ..... . ....... ... . . . . ... . . ............ .. ........... . . . .. . . . ............ .. ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . . . ...... . ..... . ....... ..................................................................................................... . . . .. . . .
lowQualScore : 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 00 000000000 0 00 00000 0 0 0 0 0 0 55 5555555555555555 5 000 5 0 0 55555 3 00 333 3 7 00 7 5 5555 0 000 5 55 555555555555555 0 0 55 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 00000000 55 0 0 0 000000 000000 3 0 7 77 3 33333333333333333333333 7 0 0 0 22222 0 0 8888888 5 2222 0 0 6 0 22222 0 0 0 6 4444444444444 0 0 0 888888 0 0 8 44 0 6 0 0 8 88888888888888888 2 88888888888888888888888 0000000000000 2 2222222 3 77777 33 0 8888888888888 0 888 0000000000000000000 2 00 0 0 5 000 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 0 0000000000000000 00000 0 0000000 000 0 0 0 0 000 5 5 555555555555 55 55555555555 0 0 7 33 7 7 3 333333333333 00 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 7 7 222222 7 55555 0 6666666 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 0 0 55 0 5 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACC----AGTTGTACCGTGGAATACACGTGAGATTTGTGTAAGGCAGCGTGATGATCGCNCCAGNGGGAANGTACAGGCAGCAATTTCGGGCGAATNACTTTGTTCCACCAGTNCTATGGATAGATTTTTCTGTNNATAGACGCTGGGTA-TACAGTCTGAGGCGGACTATAAAGTGTTAATGGTACANAATTGATGCGTTCGCGCATCGATTNATTTCAGCCTCGGACCNNATCTAAAAANCGNGGCGGTTTTTATGANTTCATTCTTAGTATTGCGTCCCATCCTATTTCGGAACTCGTAGTNGGAAGGAATATCTACTGGCCGCCTGCTGATTTNTTTTTCTAGAGNGAACCCATGTAACTGAAAAGTCGTCTGATGATAGACCGTATCCGGCNTCAGTACANNNTTGTAGCNAGTNCNTATACGTTGTTTAATGAACGGCTACTACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGGAGAAATTGTTTGAGTGCATAGCAGGCAGGATGTGGGAAAAACCGTT-ACGTGATGCGTTTTCAGGGGACGNAGAGCCGGACATAAATTTACNTAGCAGCACATTNNNTCNCACGANCTATATGA-CTTACACC-TGTATCT---AGAAG-ANCC-GCGT-TTGAAGCCGGACATTTTGTAAANAAATAAAAANACCATGNACAGNCCTTTTTGACGGGNCTACTTTAAAACAAAATAATGAGTGACCGACACAT----ACATGAAGTGGGCAAGCNGCTCTAGCTCGTTGAGNGCGTCCGTCCAAATTGGCCACCATA--AGATTCGACTCGGGCTAGCGCACTGGAGGNAGAANCCCCAATTGGGCACCNNNNCCTACGC----T-GGC-A--C-GAGAC-CGGCA-A---CT-GGGA--AGAAA-CTCAATT-GGCA-CCAT------CG-TGCC------------A--AGC-TGGG-CA-CTGA-GCC--CAG--C-----GC---TGGG-AA--AAACCCGAATTG-GCAC-CATGGGANGCCAGCTGCCACCTTGAAAAAAAAGACGCGTCATGGCCCCAGCCGAGCCAGCCNCTGGGGAAAAACCNGAACTGTGCACNATGCGAAGNTAGGCGNCTGGAGTNTNNCTCTGGATGGTANCTCTCAAACGCGGCANANAGGTGAATGCAATGGCCGCTNGCGCNCTGNGATGCGACTCCTAATCANTATCGGGGTCACATCCNGACTATCAACCTGACCNAGAGAGCACAATGGGCTGCGCAGAANNTTCGG-CTAGAANTNCGTGGTAANAGTATGCAGAGCTCAGAGTACACGAAAACACGTGGACGACTACCATTCATTTGTGGTNATCAGATACAAGNAGNCNNGAAAAAATGCAAACCANAGATTGTCTTGAGCGNANNNTANGAATGNACGCGGGAGNNCACAGGCNAGGCTACTACNTTGTATCACAGCAGACTGATANGAAAGGCNCGGACTGAGGGTTATTNCCTAG-CCA-GAATNCGNGGCAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGN-A-CG-GGACTGGAA-CT-GGGCCTCTACAA--CC-CT-CAG-AAT------GAGCCT----CCG-GCC-ATGANC-AAAGAA--GATTTTTGC-GA-TCATTTCCACNA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG--TCCT-GACTGAAGAAGCTG--GG-----------A--G--AACTG------AC--GGGCAAAAATCTAG-AACCCTAGG-AAGG-A-T-CACTCC-GATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATCG-GTCGCCGGATTGCCCCCCAGANACGCGACGNTNATCCGCCATAAGACCAGTAACACAGNACGGGAT-TATCACCGCAGTACCCCGNTTGACAGAATATCCGGCATCGCGGTNANCCGAAGCNGAGTCGAAACACAANCAGAAGGGNTCCT-TGC-ACACAGTGGCGGGGAAATTAGAAACTGGATCAGTGGACTGAGTCCGGAAG-AACAAGCGGAGATCGATG-AATAATGATTGGACATCCCG-TACCTGGCC--AAACCTGCTGTGAAGAGANGAGTACAAANCGTTAG-AGANTGTGGGAATCTGCCCGCACCTAAACAAAGTGAAGAACCCGCCNAAAAGAAGA-AAGAAACTGAGCCGAAA-GTAAAAA-----CTTGGAACTGTTTTTT-ATGCTGAACTGTTTAAAAACTGNTTTTAT-----AAAANC-TTGAACTGT-TTTT-AT-GCC------G-----TTTAA------------AAACTGTTTTA----CGTT---G-------T------TTCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTC------TTTATT-ATGCACA-GGAAT--A-CAC-AGGATTTAATAC---------------------ACTGGAATTT--CAC-GG-A--TTTATGC----GATCGATACA-A-GGAATA--CACAAG-----------AAT---NCACTGGAT-TTTAC-GC----GATCG-------ATA-ACAC---CC--TAA-GTGTGCTACA-TTTTT--GAC-GTCATA--ATGC-TTT---C--CAAGTGC---G-----AT--C-CCANAA---AAT-AGCTT-CGC---CCTGTGCTAA-AACTCGAAN-CT-AACTAGNCCAGCGGC--AA-TAG-CCGACCTATA----------------------GC-C--CG---GC--TCTAAACCC-GGCC--GGGCT-------C--------A-------TAAA-CC----CG--G----G---C-TCTAAA-CCC-G------GCCG-G--C--TAGCCCGGCGACCCCTGCTGGGGTCAAA-C----------CT--CGACCCCAGCGTCCTAGNTATNGCAACCGGACACCCCTGCNGGGGTCAAATC---GCTTGAC-CAATCAG------CATTG--TGACCTCATTTGCA-TANAAAGTNGCACTCAGGTTGAACCTCCCTATCGAGGG
Reference ( gi|1 ) : TAATGAAAGGCTTCGAACACCTGTATTTATAGGTGAAAAAAAGGTAATGCATTCAACCGTGTCTGTGCATCACGTGATCAACCCCCTTGTGCGTTAGTGTGCGTTAGCATTCATTCTTGT---CTGACCGCACAGTCAT----TGGATAACACG-GAGACTT-T-TAAG--AGCA-GA----CGCGCCAACGGATAA--ACAGA-AGTA-----GAG-GAATTA------TCAACCAGTG-TA-AGA-AGATT-----ATGT-TAGACG--AGATGCTATA-TCTG--GGAAA--AT------TTA---GTACAGA---GATG--T-CGC-CATCGATTAA---C-GCT--GGAGCCGATC-AAAAAATTTGGTG--TT----GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTGGGAAAGA-TAT-T------TGCC-GC------GTT----TAG-GCGA---CATGTACCTGAAAAA------------A-ACCTT-TCTAACA--AGTACACGAT--TA-CCAGTTTTTATACG-TAT----TGAACGGC-ACTTCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGA--TTGTTTTGG-GC-T-GCAGGCTGGATGTGGG--AAACCGGTAAAGTAATGCGTTTCCGGGAGA-GAAGAGCTCGACA--A---TA-ATA-CA-CACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AACC-GCGTATTGAAGCCGGACATTTTGTAAAAAAATAAAAATACCAT-CACAGCCCCTTTTTA-GGGCCTACTTT-AAACAAAAT-ATGAGTGAC--ACACACAAAAACAT-AAGT--GCA--CTGCCCTAGTTCGTTAAG-GCA---------ATTGGCCACCATGCCAGCT--GACCTGAGCC--CGCACTGG--GAAAAACCCT-AATTGGGCATCATTGC--A-GC----T-GGC-A--C-GAGGC-CAGCA-----CT-GGAA--AAAAAGCTCAATTTGGC--CCAC------CACTGCC------------A--AGC-TGCG-CA-CTGA-GCC--CAG--C-----AC---TGGG-AA--AAACC---ATTG-GCAC-T------TGCCAGTAGACAC--TGAGAA------C-CATTTTGGC----GCTGAGTCAGGCACTGGGGAAAAACCC--ATTG-GCACTGTGCC-AGCT-GGCACCTG-AG-CCAGCACTGGA-GAAAATTTT---ACG-GGC-TATAA--AAAGGCAG-AGCC-CTCGCACTCT------C-ACTC-T--TCAC-ATCG-----AC-TTCAGAC------CCTGACCT-GAGA--ACA-T-GGCT---CAGAAAA--CAGCCTAGAAATTCGTGG-A-CA------AGAGCTCAGA----AGGAAA----GTGAATAA--AACA--------TGGCTA-CAGA---AA-AAGACTGG----AATGCAA--CAAAGATT-TCTTGAGCGAA----AAGA-TAGACA-GGGAGCTCA---GCGAGGCT--TACATGG----ACAGCAG-CTG--AAAAAAGGCCAAGACTGAGAGTTTTTACCTACTCCACGAATCCTA--CAGACC-AGGCTTGGGATTTTTTT-CCCGGAG-TC---G---CAAAAGATGC-A-CGCGGACTGGAA-CT-GG-CCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GA-TTT-GC-GA-TCATTACCACCA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGATAA-TGAGATTGG-AA-TCATACC--AC-G--TCCTTGCCTGAAGAAGC----GG-----------A--A--AACTG------AC--GGGCAAAAATCTAGGAACCCTAGG-AAGG-ATTACACTCCAGATT-ACGCTA-TAAC-----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGAAAGGCAGCATTTATCCGC----AGACCAGTA----AAGA-AAGATGTATC-C-GCAG-A--CCAGT--A-AGAA-ATCGGGC----CGATAAACC--AGCAGAAGTAAAACACAAACA-AAGGGATCCTGTGCTACA-AGTG-CGGT-AAATTAGGCACTG-ATCAGTG-ACTG---TCGCAAGGAACAAGCGGAGATCGATGGAAGGATGATTGGGC---CCGCTACCTGGCTCAAAACCCG-TGTGA-GAGAAGAGTACAAACCGTTAGCAGATTGTGAGAATC--CCCGCACC---AC----TGAAGAA-CCGCCTAAAAGAAGAGAAGAAA-TGAGCCG-AA-GTAAAAA-----CTTGAAACTGTTTTTTTATGCTG-----TTTTAAAACTGTTTTCATTGTTAAAAAAC-TTGAACTGTATTTT-AT-GCT------G-----TTTAA------------AAACTGTTTTA----CATT---G-------T------TTCTTTAATAAACATGTAAAACTAAAAC-CTTGGTGTTAGTC------TTTA-T-ATGCAGA-GGAAT--ACCACAAGGATTTTATAC---------------------ACTGGAATTT--CAC-AG-A--TTTATGC----GATCGATACA-G-GGAATA--CACAGG----------GAAT---ACAC-GGATATTTATTGC----GATCG-------AT---------TC--TAA-GTGTGCTACA-TTTTT--GACAGTCATA--ATGC-CTC---C--CAAGTGC---G-----AT--TTTCAGAA---AAT-AGCTTTCAC---CCTTTTCCAC-AACTCAAAG-CGAAAGTAGACCA-CGGC--AA-TAG-CCAACCTATA----------------------GCTC--CG---GCA-TCTAAACCC-GGCC--ATGCT-------T--------A-------TTAA-CC----CG--G----A---C-TCTAAA-CCC-G------GCCG-G--C--TAGCCCGGCGACCCCTGCTGGGGTCAAA------------CT--TGACCCC---GTCCTAGCTATTGCAACCG-----CCCAATCGAGGCCAGACCACCGCTTGACTCAATCAGAAGCCGCATTGCTTGACCTCATTTGCAGTAAAAAGT--CACTCAG-TTGAACCTCCCTATGGAGGGGGGCTATA
gi|3 : TTCTTGTAACCCGACC----AGTTGTACCGTGGAATACACGTGAGATTTGTGTAAGGCAGCG-GATGATCGCTCCAGCGGGAAAGTACAGA--GCAATTTCGGGCGAATTACTTTGTTCT-TCAGTG-TATAGATAGATTTTTCTGTCT-TAGACACTGGGTA-TACA-TCTGAGGGAAACTAT------TTAATGGTACATAATTGATG--TTCGC-CATCGA--AATTTC-GCCTCGGACCATATC-AAAAATCGTGGCGGTTT----GATT--ATTCTTAGTATTGCGTCCCATCTTATTTCG-AACTCGTAGTTGG-AAGA-TATCT------TGCCTGCTGATTTGTTTTTCTAGAGAGAACCCATGTAACTGAAAAGTCGTCTGATGATA-ACCGTATCC-ACT--AGTATAGTCT--TAGCCAG-TTATATA-G-TGTTTAATGAACGGCTACTACAA
gi|7 : GCATGA----CGCG--AGAGGAAAT--ACAGGCAATA-----GAG-GAATGA------TTCACCAGTTCTA-GGA-AGATT-----ATGGATAGACG--AAGT---ATAGTCTG--GCGGA--ATAAAGTGTTA---GTACAGA---GATGCGT-CGCGCATCGATTTA---CAGCT--GGA--CGATCTAAAAAATTGGGTG--TTTTATGAGTTCAT-----GTATTGCGTCC---CC-AT---GGAAC-----GTAGGAAGGAATAT-TACTGGCCGCC-GT------TTT----TAG-GCGA---CATGTA--TGAAAAA------------AGACC---TCTGGTATCAGT-C-TGGTTGTA-CAAGTGCTTATACGTTAT----TGAACGGC-ACTtgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaattggccactagactcggcatactagaggtagaactctcaattggcatccatgcctacgcttggcactgaagcctacagatccctcggaaaaaactcaattggcccatggccagtctggacgagccagtcactggggaaaccactgtgcacaatgtcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|3 : TATGGAGAAATTGTTTGAGTGCATAGCAGGCAGGATGTGGGAAAAACCGTT-ACGTGATGCGTTTTCAGGGGACGAAGAGCTC-ACA--AATTTACCTAGCAGCACA-TACATCACACGAACTATATGAGCTTACACCGTGTTTCTATCAGAAGCAGCA-GCCTATgctaatgaaagatttggg
gi|2 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagcGA-GCAGAGTCGGACATAA---TA-ATA-CAGCACATTTACTCCCA-GATC-AT--GA-CTTACAC--TATATCT---AGAGA-ATCT-GCGT--TGAAGCCGGACA-TTTGT--AAAAAT--AAACACCAT-GACAGGCCTTTTTGACGGGGCTACTTTAAAACAAAATAATGAGTGACCGACACAT----ACATGAAGTGGGCAAGCAG--CTAGCT--TTGAGAGCG---------A--------CATA--AGATTCGA--TAAGCTAGTGC-CTGG--GAAAAAACTC-AATT-GGCACCATGCC--A-GCAGTAT-GGC-AACT-GAGAC-CAGCA-----CT-GGGA--AGAAAACTCAA-TTGGCA-CCATGGGATGCGCTGCCACCTTGAAAAAAA--AGA-CGCGTCA--TGG-CCC--CAA--CCGAATGCCTTTGGGAAA--AAACCAGAATTG-GCAC-cacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaattggccactagactcggcatactagaggtagaactctcaattggcatccatgcctacgcttggcactgaagcctacagatccctcggaaaaaactcaattggcccatggccagtctggacgagccagtcactggggaaaccactgtgcacaatgtcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|14 : GA-CTTACACC-TGTATAT---AGAAG-AACCTGCGT-TTGAAGCCGGACATTTT-TAAATAAA-AAAAAAACCATGCACAGC-------------CCTACTTTAAAACAAAAT-ATGAGTGAC--ACACcatcgagttaggcaactggaggtcgcggatggtaactcgcgactagaggtaaatgcaatggccgctggcacactacgatgcactccttcactatcgacttcagacctgaccagagaacaatggctcagaacacgctagaattgcgtggaacactcagaaaaagtgaataacatggtatcagaaagaagacgagaatgcaacaagattcttgagcgaagtaaagaatagacaagagtacaggaggctacattaacagcaactgacgggcccagactgaaggttatttcctagccagaatcctaggtagaccaggctttggaattcttcccggagtcatcaagattaacgggactggaaactgggccactacaaatgctcaggaatcaacctccggcatgacaaaagaattttggcgatcattacacgaacactagatcggaattgatttaacacgcattaatgtgctgagtaagtgagatggaatcatacacagtcctgctgagaagctggatagaactgtacgggaaaaaatctagaaccttagggaaggcactcactcctgattcacgctactaatacggcgtgctaacactctgcggtgaacgacttggtcgcggatgcccagaaaaacgattatcagaccataagaacaggattatcccgcagactagttgacagaatatctgccgattaaccagcagagaaaaacaatcagaagggaccttgcacacagtggcggggaaattagaaactggatcagtggactgagtccggaagaacaagcggagatcgatgaataatgattggacatcccgtacctggccaaacctgctgtgaagagacgagaaaacgtagagagtgtggatccccgcacctactaagaacccgctaaaaagaagcaaaaactgagccgaaagtaaaaccttgaactgtttttttatagccacggtggtttaagcccttagggtgaggctgttttatgtcttggtgtgtttataaacatgtaagacttagatacttggtgttagtctttattatgcaagaattaagcacaggaatgaactggatttctgcgacggcataacattcgctaaagtgtgatcattttgacgtcatagcatgctctctggcagtgtccagatttcagaaaatgagcttcagcctttccacgaactcaaaacagtagaccacggcaatagccaacttataaaccgaaactctaaacccggctcggggctcaacgggcaataaagcgacgccgagtgctataaacccggcggctcgaccggctcacaggccgatgctatataacttcaggccgtgctataagaacgcgccgggtcactcgggcctctaaaacccgcggctggccggtgctacccggcgaaccctgctgggtcaaactgctgacaatcacatgacctctttgcatacaaagttgcactcaggttgaaccacgaggacggcgcgtttagtatact
gi|3 : CA--TTGCTCT----CGTTAAGTGCATCCGTCCAAATTGGCCACTA----------GACTCGG-----CATACTAGAGGTAGAACTCTCAATTGG-CATCCATGCCTACGC----TTGGC-A--CTGAAGC-CTACAGATCCCTCGGAA--AAAA--CTCAATT-GGC--CCAT------G---GCC------------A--GTC-TGGA-C----GA-GCC---AGT-C-----AC---TGGG--G--AAACC---ACTGTGCAC-
gi|3 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacc----T-GGCCA--C-TAGACTCGGCATA---CT-AGAGGTAGAACTCTCAATT-GGCATCCA----------TGCCT-----------A--CGC-TTGG-CA-CTGAAGCCTACAGATC-----CC---TCGG-AA--AAAACTCAATTG-GCCCAT------GGCCAGT-----C--TG------------------GAC----G---AGCCAGTCACTGGGGAAA---CC--ACTGTGCACAATGTCAAGAT-GG-GC----AGTCTACCTCTGG------CTTCTCAAATGAAGCAGATAA--GAA-GCAA-AA----TCGAGCTCTGGG---CGACTC-TAATCAA-ATCGGGGTCACATCCTGACTATCAACCTGACCTAGAGAGCACA-TGGGCTGCGTAGAAACTTCAG-CTAGAAATTCGTGGTA-AAGTATGCAGAGCTTAGAGTACACGAAAACACGTGGACGACTACCATTCATTTGTGGTAA-CAGATACAA-TAGTCTCGAAAAAATGCAAACCACAGATTGTCTTGAGCGCACGTTATAA-TGTACGCGGGAGGTTACAGGCCAGGTTACTATTTTGTATCACAGCAGACTGATAAGAAAGGCAAGAATTGAGaatgtcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|2 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaat-----CT-GGGA--AAAAA-CTCAATT-GGC----AC------CA-TGCC------------AGCAGTATG-G-CAACTGA-GAC--CAG--C-----AC---TGGG-AAGAAAACTCA-ATTG-GCAC-CATGGGATGC--GCTGCCACCTTGAAAAAAAAGACGCGTCATGGCCCCAACCGAAT--GCCTTTGGGAAAAAACCAGAATTG-GCACCAT-CG-AGTTAGGCAACTGGAG-GTCGC---GGATGGTAACT------CGCGAC-TAGAGGTAAATGCAATGGCCGCTGGCACACTACGATGC-ACTCCT--TCACTATCG-----AC-TTCAGAC------C-TGACCA-GAGA--ACAAT-GGCT---CAGAACA--CG--CTAGAATTGCGTGG-AACA----------CTCAGA----A--AAA----GTGAATAA----CA--------TGG-TATCAGA---AAGAAGACGAG----AATGCAA--CAA-GATT--CTTGAGCGAAGTA-AAGAATAGACA-AG-AGTACA---G-GAGGCT---ACATTA----ACAGCAA-CTG--ACG---GGCCCAGACTGAAGGTTATTTCCTAG-CCA-GAATCCTAGGTAGACC-AGGCTTTGGAATTCTT--CCCGGAG-TC---AT--CAA--GATTA-A-CG-GGACTGGAAACT-GGGCCACTACAA--ATGCT-CAGGAAT------CAACCT----CCG-GC--ATGACA-AAAGAA--TT-TTG-GC-GA-TCATTAC-ACGAACAC-------TA-GATC-GGAATTGATTT--AACACGCATTAA-TGTGCTGAG-TAAGTGAGAT-GG-AA-TCATAC---ACAG--TCCT-GC-TGA-GAAGCT---GG-----------ATAG--AACTGT-----AC--GGGAAAAAATCTAG-AACCTTAGGGAAGGCACT-CACTCCTGATTCACGCTACTAATA----CGGCGTGCTAACAC-TCTGCGG------TG--AA-------C--GAC--TTG-GTCGC-GGAT-GCCC---AGAAA---AACGATTATC-------AGACCA-TA----AGAACAGGAT-TATC-CCGCAG-A--CTAGTTGACAGAATATCTG-C----CGATTAACC--AGCAGAG--AAAA-ACAATCAGAAGGGA-CCT-TGC-ACACAGTGGCGGGGAAATTAGAAACTGGATCAGTGGACTGAGTCCGGAAG-AACAAGCGGAGATCGATG-AATAATGATTGGACATCCCG-TACCTGGCC--AAACCTGCTGTGAAGAGACGAG---AAAACGT-AG-AGAGTGTGG--ATC--CCCGCACCT--AC----T-AAGAACCCGCTAAAAAGAAG-CAAAAAC-TGAGCCGAAA-GTAAAAC-----CTTG-AACTGTTTTTTTAT
gi|10 : gagcagagtcggacataataatacagcacatttactcccagatcatgacttacactatatctagagaatctgcgttgaagccggacatttgtaaaaataaacaccatgacaggcctttttgacggggctactttaaaacaaaataatgagtgaccgacacatacatgaagtgggcaagcagctagctttgagagcgacataagattcgataagctagtgcTTACCTAG-CCA-GAATATGT--CAAACCCAGCCTTAGGAGTTTTTT-CCCGGAG-TC---A---C--AATATGCAA-CG-GAACTGGAA-CTAGG-CCTCTACAA--CA-CG-AAG-AATGCATCGGAACCTGAGGCCGCGCCAATGAGC-AAAGAA--GATTTT-GC-GA-TCATTTCCAC-----G-------TA-GA-C-GGGATCA--TG--AAC-AGAATTAA-TGTGCTG-GGTGA-TGAAATTGG-AACTCATACC--Aagccacggtggtttaagcccttagggtgaggctgttttatgtcttggtgtgtttataaacatgtaagacttagatacttggtgttagtctttattatgcaagaattaagcacaggaatgaactggatttctgcgacggcataacattcgctaaagtgtgatcattttgacgtcatagcatgctctctggcagtgtccagatttcagaaaatgagcttcagcctttccacgaactcaaaacagtagaccacggcaatagccaacttataaaccgaaactctaaacccggctcggggctcaacgggcaataaagcgacgccgagtgctataaacccggcggctcgaccggctcacaggccgatgctatataacttcaggccgtgctataagaacgcgccgggtcactcgggcctctaaaacccgcggctggccggtgctacccggcgaaccctgctgggtcaaactgctgacaatcacatgacctctttgcatacaaagttgcactcaggttgaaccacgaggacggcgcgtttagtatact
gi|8 : CC-AGGCTTAGGATTTTTTTTCCCGGAGATCCCAGAATCAGAAGATGT-AACAGGGA-TGGAA-CT-GGGTCTTTACAA--CC-CT-CAG-AAT------GAGCCT----CCG-GCC-ATAAAC-AAAGAA--GA-TTTTGC-GA-TCATTTCCACGA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAG-TAA-TGAGATTGGAAA-TCATACC--ACAG--TCCT--ACTGAAGAAGCTG--GA-----------A--A--AACTG------AC-----C-----TCTAAAAA-CCTAGG-AAGG-AATACACCCCAGATT-ACGCTACTAAC-----C--CGTGCTA-CAC-T-TGCGG------AC--AAg
gi|6 : gacGAA-CT-GGGCCTCTACAGATCC-CTGCAG-AAC------GAGC-T----CCG-GCC-AGGAAC-AAAGAA--GATTTT-GCGGA-TCATTACCACCACCAC-------TAGGA-CGGGGATCG--TTAGAAC-CGCATTAATTGTGCTGAGGTAA-TGAGATGGG-AA-TC-TACCGAGCAG--TTCCTG-CTGAAGAAGCTATTGGCACGTTTCCCAA--G--AACTGGGTATCACGTGGGCAAAAATCTAGTAAC
gi|9 : CC-ATGACCCAAAGAATAGA-TTTTGC-TACTCATTTCCACC--CACGTTAGGTTA-GA-C-GGGATAG--TC--AAC-AGAATTAA-TGTGTGGAGA-GA-TGAGATTGG-AAACCATACA--A--GAATCCT--ACTGAAGAAGA----TG-----------A--AGGAGCTG------AC--GG-CAAAAATC-------CCAAGG-ACGG-A----ACTC---------GCCACTAAC-----C--CATGCTA-CAC-C-TGTGG------AG--AAATACTAGTAGGAC-ATTG-GTatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatattacgctactaacatcctccgtgctacaccttgcggttgttcggccaaacaggacatttggtcgc
gi|6 : cccATT-ACGCTACTAACATCCTC--CGTGCTA-CACCT-TGCGGTTGTTCGGCCAAA------CAGGACATTTG-GTCGC
gi|11 : gaactgggcctctacagatccctgcagaacgagctccggccaggaacaaagaagattttgcggatcattaccaccaccactaggacggggatcgttagaaccgcattaattgtgctgaggtaatgagatgggaatctaccgagcagttcctgctgaagaagctattggcacgtttcccaagaactgggtatcacgtgggcaaaaatctagtaacatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatG--AAA------CAGGAAAATCATGTCTTCGGATTGCTCCCCAGACACGCGAGATTAATTCGCCATAAGACCAGTAACACAATA-GAGAT-TATCAC-GCAATACCCCGTT--A-AGAA-ATTCGGCATCGCAGTAATTCGAAACTGAATCGAAAC-TAAAC--AAGGACTCCT
gi|4 : AGAGTACAAACCGTTAG-AGAT-GTG-GAATCTGCCCGTACCTAAACAAAGTGAAGAA-CCGCCTAAAA-AGAAGAAGAAACTTAGCCGAAA-GTAAAAA-----C--GGGACTGTGCTTTAGTG--------------AACTGTTTTTAT---------GC-TT-AACTGT-TTTT-----------------------A------------AAAC-ATTGTG----CATT---GTTCTTGTT------TTCCTTAATAAACATGT-AAACTTAAAC-CTT-GTGTTATTCTTGGGATTTATT-ATG--GATTTAAT--A-CAC-AGGA----ATAC---------------------AC-AAAATTT--CAC-AG-GATTTTATGCCTTGGATCGATACA-
gi|5 : AAGAAGA--AGAAACTGAGCCG-AAAGTAGAGATGGTGCTTGAA-CTGTTTTT--ATGCTGAACTGTTTAAAAACTGATTT--------AAAAACATTG---TGCAT-----T-GTT------C-----TTTAA------------TAA-------A----CA-T---G-------T------------------------AAACTTAAAC-CTT-GTGTTAGTC------TTTATT-ATGCACA-GGAAT--A-CAC-AGGATTTAATACAGAGGAATACACAAGAATTTTACTGG-ATTT--CACTGG-AT-TTTATGC----GATCGATAcattcctaagtgtgctacatttttttgacgtcataatgcttttctccaagtacagccaaatgacgtcacaatagagctcgcgctcctgtgctaaaacctgcactctaaactagcccagcggcaatacactctacgccatacgctctgaaccccggccgggcctaccggcctctaaactcacccgtgctatagcccggacacccctgcaggggtcaaatcgcttgaccaatcagcattgacctcatttgcataaaaagtgcactcagttgacctccctatcgaggg
gi|2 : AAAACC-TTGAACTGTTTTTTTATAGCCACGGTGG-----TTTAAGCCCTTAGGGTGAGGCTGTTTTA----TGTCTTGG-------T------GTGTTTA-TAAACATGTAAGACTTAGATACTTGGTGTTAGTC------TTTATT-ATGC--A-AGAATTAAGCAC-AGGA----ATGA---------------------ACTGG-ATTT--Caacacattcctaagtgtgctacagtttttgacgtcataatgctctccaagtccaaaaccgaatgacttcacaatcctgtgctaaacctgcactctcaactaggccagcggcttaactagaccgacctataaaccggcctctaaacccggtcggctcaccggctctagacccggccggctcaccggttataaaccaggccgggctctagacacggccgggtagccggcgacccctgtggcaaaactgcgcatgtccttgaccccagcgtcctagatattgaaccacccatcgggagcgtttatac
gi|5 : gagcagagtcggacataataatacagcacatttactcccagatcatgacttacactatatctagagaatctgcgttgaagccggacatttgtaaaaataaacaccatgacaggcctttttgacggggctactttaaaacaaaataatgagtgaccgacacatacatgaagtgggcaagcagctagctttgagagcgacataagattcgataagctagtgcctgggaaaaaactcaattggcaccatgccagcagtatggcaactgagaccagcactgggaagaaaactcaattggcaccatgggatgcgctgccaccttgaaaaaaaagacgcgtcatggccccaaccgaatgcctttgggaaaaaaccagaattggcaccatcgagttaggcaactggaggtcgcggatggtaactcgcgactagaggtaaatgcaatggccgctggcacactacgatgcactccttcactatcgacttcagacctgaccagagaacaatggctcagaacacgctagaattgcgtggaacactcagaaaaagtgaataacatggtatcagaaagaagacgagaatgcaacaagattcttgagcgaagtaaagaatagacaagagtacaggaggctacattaacagcaactgacgggcccagactgaaggttatttcctagccagaatcctaggtagaccaggctttggaattcttcccggagtcatcaagattaacgggactggaaactgggccactacaaatgctcaggaatcaacctccggcatgacaaaagaattttggcgatcattacacgaacactagatcggaattgatttaacacgcattaatgtgctgagtaagtgagatggaatcatacacagtcctgctgagaagctggatagaactgtacgggaaaaaatctagaaccttagggaaggcactcactcctgattcacgctactaatacggcgtgctaacactctgcggtgaacgacttggtcgcggatgcccagaaaaacgattatcagaccataagaacaggattatcccgcagactagttgacagaatatctgccgattaaccagcagagaaaaacaatcagaagggaccttgcacacagtggcggggaaattagaaactggatcagtggactgagtccggaagaacaagcggagatcgatgaataatgattggacatcccgtacctggccaaacctgctgtgaagagacgagaaaacgtagagagtgtggatccccgcacctactaagaacccgctaaaaagaagcaaaaactgagccgaaagtC-TTGAACTGT-TTTT-AT-GCT------GAACTGTTTAA------------AAACTGATTTAAAAACATT---G-------TGCATTGTTCTTTAATAAACATGTAAA-CTTAAAC-CTTG-TGTTAGTC------TTTA------------------------------TTATGC---------------------ACAGGAATA---CAC-AGGA--TTTA------------ATACA-GAGGAATA--CACAAGAATTTTACTGGATT---TCACTGGAT-TTTAT-GC----GATCG-------ATAAACACATTCC--TAA-GTGTGCTACAGTTTTT--GAC-GTCATA--ATGC-TCT---C--CAAGT-----------------CCAAAACCGAAT-GACTT-CACAATCCTGTGCTAA-ACCTGCACT-CTCAACTAGGCCAGCGGCTTAACTAGACCGACCTATAAACCGGCCTCTAAACCCGGTCGGCTCACCG---GC--TCTAGACCC-GGCC--G-GCTCACCGGTT--------A-------TAAA-CCAGGCCG--G----G---C-TCTAGA-CAC-G------GCCG-G--G--TAGCC-GGCGACCCCTG-TGG---CAAAACTGCGCATGTCCT--TGACCCCAGCGTCCTAGATATTG-AACCA-----CCC-ATCGGGtgcgacggcataacattcgctaaagtgtgatcattttgacgtcatagcatgctctctggcagtgtccagatttcagaaaatgagcttcagcctttccacgaactcaaaacagtagaccacggcaatagccaacttataaaccgaaactctaaacccggctcggggctcaacgggcaataaagcgacgccgagtgctataaacccggcggctcgaccggctcacaggccgatgctatataacttcaggccgtgctataagaacgcgccgggtcactcgggcctctaaaacccgcggctggccggtgctacccggcgaaccctgctgggtcaaactgctgacaatcacatgacctctttgcatacaaagttgcactcaggttgaaccacgaggacggcgcgtttagtatact
gi|17 : aagaagaagaaactgagccgaaagtagagatggtg------TTTA-TTATGCACA-GGAAT--A-CAC-AGGATTTAAAAC---------------------ACTGGagcgtttatac
gi|4 : TGGGATTTATTAT-GG-A--TTTA------------ATACACA-GGAATA--CACAA------------AATTTCACA--GGAT-TTTAT-GCCTTGGATCG-------ATACACATT--CC--TAA-GTGTGCTACA-TTTTTTTGAC-GTCATA--ATGC-TTTTCTC--CAAGTAC---AGCCAAATGACGTCACAA---TAG-AGCTCGCGCT--CCTGTGCTAA-AACCTGCACTCTAAACTAGCCCAGCGGC--AA-TA---CACTCTA-------------------------CGC--CATACGC--TCTGAACCCCGGCC--GGGCC-------T--------A-------------C----CG--G----C---C-TCTAAA-CTC-A------CCCGTG--CTATAGCCCGGACACCCCTGCAGGGGTCAAATCG---------CT--TGACC
gi|2 : agagtacaaaccgttagagatgtggaatctgcccgtacctaaacaaagtgaagaaccgcctaaaaagaagaagaaacttagccgaaagtaaaaacgggactgtgctttagtgaactgtttttatgcttaactgtttttaaaacattgtgcattgttcttgttttccttaataaacatgtaaacttaaaccttgtgttattctATGCA-A-GAATTAAGCACAGG-----------AAT---GAACTGGAT--TT-CTGC----GA-CGGCATAACAT---------TCGCTAAAGTGTGAT-CA-TTTT---GAC-GTCATAGCATGCTCTC---TGGCA-GTGTCCAG-----AT--TT-CAGAA---AATGAGCTT-CAG---CCTTT-CCACGAACTCAAAA-C---AGTAGACCA-CGGC--AA-TAG-CCAACTTATA----------------------AA-C--CG---AAACTCTAAACCC-GGCTCGGGGCT-------CAACGGGCAA-------TAAA-GCGA--CGCCG----AGTGC-TATAAA-CCC-G------G-CG-G--C--TCGACCGGCaatcagcattgacctcatttgcataaaaagtgcactcagttgacctccctatcgaggg
gi|13 : gagcagagtcggacataataatacagcacatttactcccagatcatgacttacactatatctagagaatctgcgttgaagccggacatttgtaaaaataaacaccatgacaggcctttttgacggggctactttaaaacaaaataatgagtgaccgacacatacatgaagtgggcaagcagctagctttgagagcgacataagattcgataagctagtgcctgggaaaaaactcaattggcaccatgccagcagtatggcaactgagaccagcactgggaagaaaactcaattggcaccatgggatgcgctgccaccttgaaaaaaaagacgcgtcatggccccaaccgaatgcctttgggaaaaaaccagaattggcaccatcgagttaggcaactggaggtcgcggatggtaactcgcgactagaggtaaatgcaatggccgctggcacactacgatgcactccttcactatcgacttcagacctgaccagagaacaatggctcagaacacgctagaattgcgtggaacactcagaaaaagtgaataacatggtatcagaaagaagacgagaatgcaacaagattcttgagcgaagtaaagaatagacaagagtacaggaggctacattaacagcaactgacgggcccagactgaaggttatttcctagccagaatcctaggtagaccaggctttggaattcttcccggagtcatcaagattaacgggactggaaactgggccactacaaatgctcaggaatcaacctccggcatgacaaaagaattttggcgatcattacacgaacactagatcggaattgatttaacacgcattaatgtgctgagtaagtgagatggaatcatacacagtcctgctgagaagctggatagaactgtacgggaaaaaatctagaaccttagggaaggcactcactcctgattcacgctactaatacggcgtgctaacactctgcggtgaacgacttggtcgcggatgcccagaaaaacgattatcagaccataagaacaggattatcccgcagactagttgacagaatatctgccgattaaccagcagagaaaaacaatcagaagggaccttgcacacagtggcggggaaattagaaactggatcagtggactgagtccggaagaacaagcggagatcgatgaataatgattggacatcccgtacctggccaaacctgctgtgaagagacgagaaaacgtagagagtgtggatccccgcacctactaagaacccgctaaaaagaagcaaaaactgagccgaaagtaaaaccttgaactgtttttttatagccacggtggtttaagcccttagggtgaggctgttttatgtcttggtgtgtttataaacatgtaagacttagatacttggtgttagtctttattC--CG---GT--TATAAACCC-GACC--GGGCT-------C--------ACCGGGCTTTAAACC----TG--GCCGTG---C-TATAAA-CCC-G------GCTG-GA-C--TAGCCCGGCGACCCCTGCTGGGGTCAtcacaggccgatgctatataacttcaggccgtgctataagaacgcgccgggtcactcgggcctctaaaacccgcggctggccggtgctacccggcgaaccctgctgggtcaaactgctgacaatcacatgacctctttgcatacaaagttgcactcaggttgaaccacgaggacggcgcgtttagtatact
gi|2 : cctgcactctaaactaggctaaagcgctctacacA-CT----CG--G----G---CCTCTAAAACCC-GCGGCTGGCCG-GTGC--TA-CCCGGCGAACCCTGCT-GGGTCAAA------------CTGCTGAC
gi|4 : gagcagagtcggacataataatacagcacatttactcccagatcatgacttacactatatctagagaatctgcgttgaagccggacatttgtaaaaataaacaccatgacaggcctttttgacggggctactttaaaacaaaataatgagtgaccgacacatacatgaagtgggcaagcagctagctttgagagcgacataagattcgataagctagtgcctgggaaaaaactcaattggcaccatgccagcagtatggcaactgagaccagcactgggaagaaaactcaattggcaccatgggatgcgctgccaccttgaaaaaaaagacgcgtcatggccccaaccgaatgcctttgggaaaaaaccagaattggcaccatcgagttaggcaactggaggtcgcggatggtaactcgcgactagaggtaaatgcaatggccgctggcacactacgatgcactccttcactatcgacttcagacctgaccagagaacaatggctcagaacacgctagaattgcgtggaacactcagaaaaagtgaataacatggtatcagaaagaagacgagaatgcaacaagattcttgagcgaagtaaagaatagacaagagtacaggaggctacattaacagcaactgacgggcccagactgaaggttatttcctagccagaatcctaggtagaccaggctttggaattcttcccggagtcatcaagattaacgggactggaaactgggccactacaaatgctcaggaatcaacctccggcatgacaaaagaattttggcgatcattacacgaacactagatcggaattgatttaacacgcattaatgtgctgagtaagtgagatggaatcatacacagtcctgctgagaagctggatagaactgtacgggaaaaaatctagaaccttagggaaggcactcactcctgattcacgctactaatacggcgtgctaacactctgcggtgaacgacttggtcgcggatgcccagaaaaacgattatcagaccataagaacaggattatcccgcagactagttgacagaatatctgccgattaaccagcagagaaaaacaatcagaagggaccttgcacacagtggcggggaaattagaaactggatcagtggactgagtccggaagaacaagcggagatcgatgaataatgattggacatcccgtacctggccaaacctgctgtgaagagacgagaaaacgtagagagtgtggatccccgcacctactaagaacccgctaaaaagaagcaaaaactgagccgaaagtaaaaccttgaactgtttttttatagccacggtggtttaagcccttagggtgaggctgttttatgtcttggtgtgtttataaacatgtaagacttagatacttggtgttagtctttattatgcaagaattaagcacaggaatgaactggatttctgcgacggcataacattcgctaaagtgtgatcattttgacgtcatagcatgctctctggcagtgtccagatttcagaaaatgagcttcagcctttccacgaactcaaaacagtagaccacggcaatagccaacttataaaccgaaactctaaacccggctcggggctcaacgggcaataaagcgacgccgagtgctataaacccggcggctcgaccggctcacaggccgatgctatataacttcaggccgtgctataagaacgcgccgggtc---C-TCTGAA-CCCCG------GCCG-G-------GCCTACCGGCCTCT---------AAA------------CT--CA--CCC---GT----GCTATAGC--CCGGACACCCCTGCAGGGGTCAAATC---GCTTGAC-CAATCAG------CATTG----ACCTCATTTGCA-TAAAAAGTG-CACTCAG-TTG-ACCTCCCTATCGAGGGaatcacatgacctctttgcatacaaagttgcactcaggttgaaccacgaggacggcgcgtttagtatact
gi|2 : agagtacaaaccgttagagatgtggaatctgcccgtacctaaacaaagtgaagaaccgcctaaaaagaagaagaaacttagccgaaagtaaaaacgggactgtgctttagtgaactgtttttatgcttaactgtttttaaaacattgtgcattgttcttgttttccttaataaacatgtaaacttaaaccttgtgttattcttgggatttattatggatttaatacacaggaatacacaaaatttcacaggattttatgccttggatcgatacacattcctaagtgtgctacatttttttgacgtcataatgcttttctccaagtacagccaaatgacgtcacaatagagctcgcgctcctgtgctaaaacctgcactctaaactagcccagcggcaatacactctacgccatacgTGACCTC-TTTGCA-TACAAAGTTGCACTCAGGTTGAACC
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): GAGATATACACTTACTGCGAGATTTTACTGAATTTTTTACAATTAGCGATCGAATAACACATTTCCGTAAGTGTGCTTACAAACTATATTTCATTACTTAATTGAAACGATTTTCCATACATGCTCTACAAACCAAAAACC
Unaligned ( gi|15 ): CCCCCAAACTTGACCCAAGTTAATATATAACTTATTTGTTACCTGCGTCCGCCCGTTAGGTACTAG
Unaligned ( gi|16 ): GGGACTGTGCTTGAACTGTTTTCATGCTTATTGAACTGTTTAAAACATTGTGC
Unaligned ( gi|18 ): GCATCCTAGATATTGAACCGGCCATCAGGACAGTTTATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 4444 2222 1 222 11 4444444 22 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4444444444 2 5555555555 111 1 77777777777777777777777777777 666666666666666666666 111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 222 3333333 2 555555555555555555555555555555555555555555555555555 11 1 222 11 22 1 11 1 4444444444 2 2222 1 11 111 1 333333333 1111 11 11 3333333 1 111111111 11 111 33333333 22222 1 222 333333333333 1 1 11 777777777777777777777777777777777777777777777777777777777777777777777777777 22 11 2 5555555555 111111 1 3333333 11 1 1 777777777777777777777777777777777777777777777777777777777777777 11111 333 222222222222222222222222222222222222222222222222222222 333 2 22222 1 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 2222 22 1 2 333 44444444 22222222222222222222222222222222222222222222222222222222222222222222222 11 2222 33 1 2 44444444 22 11 4444444444444 11 222222 1 1 3333 1 11 1 44444444444 2 1 11111 222222 1111 11111 1 2222222222222 1 111 22 444444444444444444 33333333333 111 1 4444444444444 33333333 111 3333333333333333333 11 1 3333333 5555555555 1 222 6666666666666 2 444444 33 2222 22 1 2 1 1 1 1 1 222 2 2 222 2 22 1 1 1 1 2 33 555555555 2 11 11 22222 1 1 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 1 1 11 77777777777777777777777 1 11 555555555555555555555555555555555555555 11 1 11 111 11 7777777777777777 111 1 1 1 222 111 33 1 11 2222222222222222222222222222222222222222222222222222222222222 777777777777777777777777777777777 22222222 11111111 333333333333333 77777777777777777777777777777777777777777777 22222 55555555 1 333 1 33 999999999999999 1 2 22 1 1
lowQualScore : 111 2222 3333 88 5 111 77 5555555 77 1 0 99 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 5555555555 3 7 1 9999999999 333 6 88888888888888888888888888888 222222222222222222222 1 333 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 333 9999999 3 4 111111111111111111111111111111111111111111111111111 88 2 5 222 4 88 3 22 5 1 55 3 8888888888 7 333 1 3 1 9999 0 22 777 0 1 666666666 4444 33 88 2222222 0 3 888888888 33 777 1 77 22222222 55 44444 0 000 4 444444444444 2 2 1 00 999999999999999999999999999999999999999999999999999999999999999999999999999 7 22 1 0 33 0 3 0 4444 5555555555 888888 0 4 7777777 11 8 6 8 0 0 111111111111111111111111111111111111111111111111111111111111111 33333 333 8 0 0 555555555555555555555555555555555555555555555555555555 3 1 7 666 0 3 1 33333 1 2 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3 7777 11 2 3 6 666 00000000 1 1 11111111111111111111111111111111111111111111111111111111111111111111111 33 1 22 8888 00 4 3 1 66666666 11 44 222 6 22 6666666666666 44 555555 888 4 1 3 3 1 7777 0 1 1 33 0 66666666666 1 0 0 8 3 22222 8 8 333333 7777 8 6 1 6 88888 1 6 6 7 6666666666666 6 6 6 99 99 6 6 3 6 3 3 6 111 0 8 8 55 0 888888888888888888 33333333333 0 444 0 8888888888888 8 88888888 8 000 1111111111111111111 0 11 2 8 6 7 6 1 5 0 11 1 9999999 6 1111111111 3 888 7777777777777 3 3 000000 0 1 1 00 1 3333 7 1 22 88 3 0 5 5 5 2 3 5 5 111 2 0 0 3 111 0 77 5 5 1 7 1 7 3 4 3 00 555555555 3 44 99 55 2 3 00000 0 3 6 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 666 3 3 0 55 0 5 0 1 99 8 0 11 1 22222222222222222222222 0 4 33 8 6 1 6 8 444444444444444444444444444444444444444 8 8 8 0 99 3 0 33 777 33 7777777777777777 1 777 0 0 0 2 777 2 2 1 0 444 44 99 1 0 11 2222222222222222222222222222222222222222222222222222222222222 8 8 55 888888888888888888888888888888888 99999999 8 99999999 5 000000000000000 77777777777777777777777777777777777777777777 55555 6 1 1 6 77777777 2 1 6 555 6 5 55 333333333333333 5 0 1 33 5 5
lowQualScore : ... .... .... .. . ... .. ....... .. . . .. .......................................................................................................... . .......... . . . .......... ... . ............................. ..................... . ... .................................................................................................. . ... ....... . . ................................................... .. . . ... . .. . .. . . .. . .......... . ... . . . .... . .. ... . . ......... .... .. .. ....... . . ......... .. ... . .. ........ .. ..... . ... . ............ . . . .. ........................................................................... . .. . . .. . . . .... .......... ...... . . ....... .. . . . . . ............................................................... ..... ... . . . ...................................................... . . . ... . . . ..... . . .............................................................................................................. . .... .. . . . ... ........ . . ....................................................................... .. . .. .... .. . . . ........ .. .. ... . .. ............. .. ...... ... . . . . . .... . . . .. . ........... . . . . . ..... . . ...... .... . . . . ..... . . . . ............. . . . .. .. . . . . . . . ... . . . .. . .................. ........... . ... . ............. . ........ . ... ................... . .. . . . . . . . . .. . ....... . .......... . ... ............. . . ...... . . . .. . .... . . .. .. . . . . . . . . . ... . . . . ... . .. . . . . . . . . . .. ......... . .. .. .. . . ..... . . . .......................................................................................... . ... . . . .. . . . . .. . . .. . ....................... . . .. . . . . . ....................................... . . . . .. . . .. ... .. ................ . ... . . . . ... . . . . ... .. .. . . .. ............................................................. . . .. ................................. ........ . ........ . ............... ............................................ ..... . . . . ........ . . . ... . . .. ............... . . . .. . .
lowQualScore : 000 5555 0000 00 5 000 55 2222222 77 0 7 00 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 0000000000 3 3 0 3333333333 333 0 77777777777777777777777777777 333333333333333333333 0 000 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 333 0000000 7 7 000000000000000000000000000000000000000000000000000 55 5 5 000 0 55 0 55 0 0 77 3 7777777777 3 000 0 3 0 0000 0 55 555 0 0 555555555 2222 88 00 5555555 8 2 222222222 22 555 0 00 00000000 88 00000 0 888 7 333333333333 0 3 0 77 777777777777777777777777777777777777777777777777777777777777777777777777777 3 00 0 7 00 7 3 7 0000 9999999999 888888 0 2 2222222 00 0 0 0 6 8 666666666666666666666666666666666666666666666666666666666666666 88888 888 0 8 8 777777777777777777777777777777777777777777777777777777 7 0 3 000 7 7 0 33333 0 3 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 7777 33 0 7 7 777 33333333 0 0 33333333333333333333333333333333333333333333333333333333333333333333333 00 0 00 7777 33 0 3 0 77777777 77 00 777 7 33 3333333333333 00 333333 333 0 0 3 3 0 7777 0 2 0 22 0 00000000000 0 0 0 0 2 22222 0 0 000000 0000 0 7 0 7 00000 3 7 7 8 7777777777777 7 7 7 22 22 7 7 7 7 2 3 7 777 8 0 0 44 8 888888888888888888 00000000000 8 222 0 8888888888888 0 44444444 0 000 3333333333333333333 8 66 8 0 7 3 7 0 0 7 77 0 3333333 7 0000000000 3 777 3333333333333 7 7 777777 7 0 0 33 0 3333 3 0 33 33 3 0 0 0 0 5 0 0 0 000 5 0 0 0 000 0 55 0 5 0 3 0 3 3 0 3 33 000000000 3 33 22 88 5 2 00000 8 2 0 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 555 2 2 0 00 8 6 0 0 00 0 8 88 0 11111111111111111111111 0 0 88 0 6 0 0 0 000000000000000000000000000000000000000 0 0 0 8 00 2 0 88 555 88 0000000000000000 0 555 0 0 0 0 555 5 5 2 8 555 00 22 0 0 00 8888888888888888888888888888888888888888888888888888888888888 0 0 22 000000000000000000000000000000000 00000000 0 00000000 0 000000000000000 66666666666666666666666666666666666666666666 88888 7 0 0 7 77777777 0 0 7 000 0 5 00 000000000000000 5 0 0 00 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACCGCACAGTCGTACCGTGGANNACACGTGAGACTTGTGTAAGGCAGCG-GATGA-CGCGCCAGCGGAAAA-TACAGG-AGTA-----GAG-GAATTA------TCNACCAGTG-TA-AGA-AGATT----TGT---TAGACG--AGGTA-TACA-TCTGGGG-GGA--ATAAAGT-TTA---GTACAGA---GATG-G-TCGC-CATCGATTAAC--C-GCC-CGGACC-GATC-AAAAATT--GGCGGTTTT--TGAGT--AT-----GTATTGCGTCCC--CCCAT----GAAC----AGTNGGAAGGAATATCT----GCCGCC---------GTTTT--TAG-GCGA---CATGTA-CTGAAAAG------------AGACC-T-TCTGGCACCAGTACACGNTTGTA-CCAGT-CTTATACGTTGT--A-TGAACGGC-ACTNCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGAAATTGTTTNGGTGCATAGCAGGCNGGATGTGGGAAAAACCGNTANAGTGATGCGTTTCCGGGGGACGAAGAGCT-GACA-TAA---TACATA-CAGCACATTACCTCCCA-GATC-ATATGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAATA--CCATGCACA---GCCCCTTTTTACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACACANA----CATGAA--GTGGGCAGGCAGCCCTA----G----------------CTCGTTAAG-GCG-------AAATTGGCCACCATG--AG-T--GACCCGAGCC-GCGCACTGG-GGNAAAAACCTCAATT-GGCATCATTGC--A-GC----TGGC-A--C-GAGGC-CGGCA-A----CTGG--GAAA-AAA-CTCAATT-GGCACCAT------CGCTGCC-ANGCTG-A------GGCA-C----TG-AGCC--CAG--C-----AC---TGGG-AA--AAACC--AATTG-GCACCATG---TGCCAG-CTG-CAC--TGAGAA----GACGCGTC-TGGC---AGCCGAGT-AGNCACTGGGGAAAAACC---ATTG-GCACCGTGC-AAGNTGGGCA-CT-GAG-CTAGC-CTGGATGG-AACTCT---ACG-GGC-ATANAG--GAA-GCAA-GGCCGCTCGCGC-CTG----GC-ACTCCT--TCACTATCG---TCACATC--GACT-TCA-A--CCTGACCTAGAGAGCAC-ATGGGCT---CAGAAAAC-CAG-CTAGAAATTCGTGG-AACA------AGAGCTCAGA----A-GAAAA---GTGAACGA-TAACAT-------TGGT-A-CAGA---AAGAAGACTNGAA--AATGCAA--CA-AGATT-TCTTGAGCGAA----AAGAATAGACG-GGGAGNTTACAGGC-AGGCTACTACATTG----ACAGCAGACTGA-AAGAAAGGCCAAGACTGAGGGTTNTTACCTA-GCCA-GAATCCTA--CAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGCAACG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GATTTTTGC-GA-TCATTTCCACNA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TGACTGAAGAAGC---TGG----------A-AGAACTG------AC--GGGCAAAAATCTA-G-AACCCTAGG-AAGG-A-T--CACTCCAGATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGAAA-GCAACGTTTATCCGC----AGACCAGTAA---AGAA-GAGAT-TATC-CCGCAG-ACCCCAGT--A-AGAA-ATCCGGC--C-CGATAAACC--AGCAGAA-CGAAACACAAACA-AAGGGATCCT-TGCTACACAGTGGCGGGNAAATTAGGNACTGGATCAGTGGACTGAGTCCGNAAGGAACAAGCGGAGATCGATGGAANGATGATTGGGCATCCCGCTACCTGGCCCAAAACCCGCTGTGAAGAGANGAGTACAAACCGTTAG-AGA-TGTGG-AATC--CCCGCACCTA-AC----CGAAGAA-CCGCC-AAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTGGAACTGTTTTTTTAT-GCT----GAACTGTTT-AAA--TG-TTTCAT-----AAAAACTTGAACTGT-TTTTA-GCTGTTTAAAAACTGT---TT-TGCGT-TG-TTTCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATGCACAGGAATA--CAC-AGGATTTAATACACTGGAATTTCACGGATTTA--------ATACA-AGGANTA--CACA-GGATTTCACTGGAT-TTT--A-T-----GC----GATCG--A-TA-A-CAT-CATT-CC-TAA-GTGTGC-TACA--TTTTTGAC-GTCATA--ATGCTC---TCCG--AGTGC--------GA-TTTCAGAA---AAT-AGC-TT-CAC---CCTNTNCTAAAACTCG-ANNCTAAACTAGACCAGCGGC--AA-T------------AG-CCGA---TCTACA----------------------GCT--C---CGGC-TCTAAA-CCCGGCCGGGCTCACCGG----TAAA----C-C----CGG----G--CTCTAAACCCGG--------CCG-G-C--T---AGCCCGGCG-------AC------CCCTGCTG------------GGGTCA----AA-----------C--CTC---GACC--CCAGCGTCCTAGCTATTGCAACC---C-A-CCCTGCCGGGGCCAGACCACCGCTTGACTCAATCAGAAGCCGCATTGCTTGACCTCATTTGCAGTANAAAGTTGCACTCAGGTTGAACCTCCCTATGGAGGG
Reference ( family-3 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACC----AGTTGTACCGTGGAATACACGTGAGATTTGTGTAAGGCAGCGTGATGATCGCNCCAGNGGGAANGTACAGGCAGCAATTTCGGGCGAATNACTTTGTTCCACCAGTNCTATGGATAGATTTTTCTGTNNATAGACGCTGGGTA-TACAGTCTGAGGCGGACTATAAAGTGTTAATGGTACANAATTGATGCGTTCGCGCATCGATTNATTTCAGCCTCGGACCNNATCTAAAAANCGNGGCGGTTTTTATGANTTCATTCTTAGTATTGCGTCCCATCCTATTTCGGAACTCGTAGTNGGAAGGAATATCTACTGGCCGCCTGCTGATTTNTTTTTCTAGAGNGAACCCATGTAACTGAAAAGTCGTCTGATGATAGACCGTATCCGGCNTCAGTACANNNTTGTAGCNAGTNCNTATACGTTGTTTAATGAACGGCTACTACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGGAGAAATTGTTTGAGTGCATAGCAGGCAGGATGTGGGAAAAACCGTTAC-GTGATGCGTTTTCAGGGGACGNAGAGCCGGACA-TAAATTTACNTAGCAGCACATTNNNTCNCACGANCTATATGA-CTTACACC-TGTATCT---AGAAG-ANC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAANA--CCATGNACA---GNCCTTTTTGACG-GGNCTACTTTAAAACAAAAT---AATGAGTG-ACCGACACATA----CATGAA--GTGGGCAAGCNGCTCTA----G----------------CTCGTTGAGNGCGTCCGTCCAAATTGGCCACCATA--AGATTCGACTCGGGCTAGCGCACTGGAGGNAGAANCCCCAATTGGGCACCNNNNCCTACGC----TGGC-A--C-GAGAC-CGGCA-A----CTGG--GAAG-AAA-CTCAATT-GGCACCAT------CG-TGCC-AAGCTG--------GGCA-C----TG-AGCC--CAG--C-----GC---TGGG-AA--AAACCCGAATTG-GCACCATGGGANGCCAG-CTGCCACCTTGAAAAAAAAGACGCGTCATGGCCCCAGCCGAGCCAGCCNCTGGGGAAAAACCNGAACTGTGCACNATGCGAAGNTAGGCGNCTGGAGTNTNNCTCTGGATGGTANCTCTCAAACGCGGC-ANANAGGTGAATGCAATGGCCGCTNGCGCNCTGNGATGCGACTCCTAATCANTATCGGGGTCACATCCNGACTATCA-A--CCTGACCNAGAGAGCACAATGGGCTGCGCAGAANNTTCGG-CTAGAANTNCGTGGTAANAGTATGCAGAGCTCAGAGTACACGAAAACACGTGGACGACTACCATTCATTTGTGGTNATCAGATACAAGNAGNCNNGAAAAAATGCAAACCANAGATTGTCTTGAGCGNANNNTANGAATGNACGCGGGAGNNCACAGGCNAGGCTACTACNTTGTATCACAGCAGACTGATANGAAAGGCNCGGACTGAGGGTTATTNCCTA-GCCA-GAATNCGNGGCAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGNA-CG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AAT------GAGCCT----CCG-GCC-ATGANC-AAAGAA--GATTTTTGC-GA-TCATTTCCACNA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TGACTGAAGAAGC---TGG----------G-AGAACTG------AC--GGGCAAAAATCTA-G-AACCCTAGG-AAGG-A-T--CACTCC-GATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATCG-GTCGCCGGATTGCCCCCCAGANACGCGACGNTNATCCGCCATAAGACCAGTAACACAGNACGGGAT-TATCACCGCAGTACCCCGNTTGACAGAATATCCGGCATCGCGGTNANCCGAAGCNGAGTCGAAACACAANCAGAAGGGNTCCT-TGC-ACACAGTGGCGGGGAAATTAGAAACTGGATCAGTGGACTGAGTCCGGAA-GAACAAGCGGAGATCGAT-GAATAATGATTGGACATCCCG-TACCTGGCC--AAACCTGCTGTGAAGAGANGAGTACAAANCGTTAG-AGANTGTGGGAATCTGCCCGCACCTAAACAAAGTGAAGAACCCGCC-NAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTGGAACTG-TTTTTTAT-GCT----GAACTGTTTAAAAACTGNTTTTAT-----AAAANCTTGAACTGT-TTTTATGCCGTTTAAAAACTGT---TT-TACGT-TG-TTTCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATGCACAGGAATA--CAC-AGGATTTAATACACTGGAATTTCACGGATTTATGCGATCGATACA-AGGAATA--CACA-AGAATNCACTGGAT-TTT--A-C-----GC----GATCG--A-TA-A-CA--C----CC-TAA-GTGTGC-TACA--TTTTTGAC-GTCATA--ATGCTT---TCCA--AGTGC--------GA-TCCCANAA---AAT-AGC-TT-CGC---CCTGTGCTAAAACTCG-AANCT-AACTAGNCCAGCGGC--AA-T------------AG-CCGA---CCTATA----------------------GC---C---CGGC-TCTAAA-CCCGGCCGGGCTCA--------TAAA----C-C----CGG----G--CTCTAAACCCGG--------CCG-G-C--T---AGCCCGGCG-------AC------CCCTGCTG------------GGGTCA----AA-----------C--CTC---GACC--CCAGCGTCCTAGNTATNGCAACCGGAC-ACCCCTGCNGGGGTCAA---ATCGCTTGAC-CAATCA------GCATTG--TGACCTCATTTGCA-TANAAAGTNGCACTCAGGTTGAACCTCCCTATCGAGGG
gi|1 : TTCTTGT---CTGACCGCACAGTCAT----TGGATAACACG-GAGACTT-T-TAAG--AGCA----GA-CGCGCCAACGGATAA--ACAGA-AGTA-----GAG-GAATTA------TCAACCAGTG-TA-AGA-AGATT---ATGT---TAGACG--AGATGCTATA-TCTGGG---------AAAAT-TTA---GTACAGA---GATG---TCGC-CATCGATTAAC----GCT--GGAGCCGATCAAAAAATT----TGGTGTT---GAGT--AT-----GTATTGCGTCCC---CCAT----GAAC----AGTGGGAAAGA-TATTT----GCCGC----------GTTT----AG-GCGA---CATGTACCTGAAAA-------------AAACCTT-TCTAACA--AGTACACGATTA---CCAGTTTTTATACGT-----ATTGAACGGC-ACTTCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGA--TTGTTTTGG-GC-T-GCAGGCTGGATGTGGGAAA--CCGGTAAAGTAATGCGTTTCCGGGAGA-GAAGAGCTCGACAATAA---TACA------CACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGTATT-GAA--GCCGGACATTTTGTA-------AAAAAATAA--AAATA--CCAT-CACA---GCCCCTTTTTA-G-GGCCTACTTTAAA-CAAAAT---A-TGAGTG-AC--ACACACAAAAACAT-AA--GTG--CA--CTGCCCTA----G----------------TTCGTTAAG-GC---------AATTGGCCACCATGCCAGCT--GACCTGAGCC--CGCACTGG---GAAAAACCCTAATTGGGCATCATTGC--A-GC----TGGC-A--C-GAGGC-CAGCA------CTGG--AAAA-AAAGCTCAATTTGGC-CCAC------CACTGCC-AAGCTG--------CGCA-C----TG-AGCC--CAG--C-----AC---TGGG-AA--AAACC---ATTG-GCACT------TGCCAG-TAGACAC--TGAGAA------C-CATTTTGGC----GCTGAGTCAGGCACTGGGGAAAAACCC--ATTG-GCACTGTGC-CAGCT-GGCACCT-GAG-CCAGCACTGGA-GAAAATTTT---ACG-GGCTATAAA----AAGGCAG-AGCC-CTCGC-------------ACTC----TCACTCT-----TCACATC--GACT-TCA-GACCCTGACCT-GAGAACAT----GGCT---CAGAAAA--CAGCCTAGAAATTCGTGG--ACA------AGAGCTCAGA----AGGAAA----GTGAATAA--AACA--------TGGCTA-CAG----AAAAAGACTGG----AATGCAA--CAAAGATT-TCTTGAGCGAA----AAG-ATAGACA-GGGAGCTCA---GCGAGGCT--TACATGG----ACAGCAG-CTG--AAAAAAGGCCAAGACTGAGAGTTTTTACCTACTCCACGAATCCTA--CAGACC-AGGCTTGGGATTTTTTT-CCCGGAG-TC---G---CAAAAGATGCA-CGCGGACTGGAA-CT-GGCCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GA--TTTGC-GA-TCATTACCACCA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGATAA-TGAGATTGG-AA-TCATACC--AC-G-TCCTTGCCTGAAGAAGC-----G----------G-AAAACTG------AC--GGGCAAAAATCTAGG-AACCCTAGG-AAGG-A-TTACACTCCAGATT-ACGCTA-TAAC-----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGAAAGGCAGCATTTATCCGC----AGACCAGTAA---AGAA--AGATGTAT--CCGCAG-A--CCAGT--A-AGAA-ATCGGGC----CGATAAACC--AGCAGAAGTAAAACACAAACA-AAGGGATCCTGTGCTACA-AGT-GC-GGTAAATTAGGCACT-GATCAGT-GACTG---TCGCAAGGAACAAGCGGAGATCGATGGAAGGATGATTGGG---CCCGCTACCTGGCTCAAAACCCG-TGTG-AGAGAAGAGTACAAACCGTTAGCAGATTGTGAGAATC--CCCGCACC---AC----TGAAGAA-CCGCC-TAAAAGAAGAGAAGAAA-TGAGCCG-AAGTAAAAA-----CTTGAAACTGTTTTTTTAT-G---------CTGTTTTAAAACTGTTTTCATTGTTAAAAAACTTGAACTGTATTTTATGCTGTTTAAAAACTGT---TT-TACAT-TG-TTTCTTTAATAAACATGTAAAACTAAAAC-CTTGGTGTTAGTCTTTA-TATGCAGAGGAATAC-CACAAGGATTTTATACACTGGAATTTCACAGATTTATGCGATCGATACA-GGGAATA--CACAGGGAATACAC-GGATATTT--ATT-----GC----GATCG--A-T-------------TC-TAA-GTGTGC-TACA--TTTTTGACAGTCATA--ATGCCT---CCCA--AGTGC--------GATTTTCAGAA---AAT-AGCTTT-CAC---CCTTTTCCACAACTCA-AAGCGAAAGTAGACCA-CGGC--AA-T------------AG-CCAA---CCTATA----------------------GCT--C---CGGCATCTAAA-CCCGGCCATGCTTA--------TTAA----C-C----CGG----A--CTCTAAACCCGG--------CCG-G-C--T---AGCCCGGCG-------AC------CCCTGCTG------------GGGTCA----AA--------------CTT---GACC--C---CGTCCTAGCTATTGCAACCG------CCCAATCGAGGCCAGACCACCGCTTGACTCAATCAGAAGCCGCATTGCTTGACCTCATTTGCAGTAAAAAGT--CACTCA-GTTGAACCTCCCTATGGAGGG
gi|10 : taatgaaaggcttcgaacacctgtatttataggtgaaaaaaaggtaatgcattcaaccgtgtctgtgcatcacgtgatcaacccccttgtgcgttagtgtgcgttagcattcaTTACCTA-GCCA-GAATATGT--CAAACCCAGCCTTAGGAGTTTTTT-CCCGGAG-TC---A---CA--ATATGCAACG-GAACTGGAA-CTAGGCCTCTACAA--CA-CG-AAG-AATGCATCGGAACCTGAGGCCGCGCCAATGAGC-AAAGAA--GA-TTTTGC-GA-TCATTTCCACG------------TA-GA-C-GGGATCA--TG--AAC-AGAATTAA-TGTGCTG-GGTGA-TGAAATTGG-AACTCATACC--Agggctata
gi|11 : G--AAA------CAGGAAAATCATGTCTTCGGATTGCTCCCCAGACACGCGAGATTAATTCGCCATAAGACCAGTAACACAATA-GAGAT-TATCA-CGCAATACCCCGTT--A-AGAA-ATTCGGCATCGCAGTAATTCGAAACTGAATCGAAAC-TAAAC--AAGGACTCCT-g
gi|12 : CG-AGATTTTACTGAAT-TTTTTA-CAATTAGC----GATCG--AATA-A-CA--CATTTCCGTAA-GTGTGCTTACA--
gi|13 : gagatatacacttactgCTAAACTAG--GC--TA-A------------AG-C-GC---TCTACA-----------------------C---C---CGGT-TATAAA-CCCGACCGGGCTCACCGGGCTTTAAA----C-C----TGGCCGTG--CTATAAACCCGG--------CTG-GAC--T---AGCCCGGCG-------AC------CCCTGCTG------------GGGTCA----aactatatttcattacttaattgaaacgattttccatacatgctctacaaaccaaaaacc
gi|14 : cctgcactGA-CTTACACC-TGTATAT---AGAAG-AAC-------CTGCGT-TT-GAA--GCCGGACATTTT-TA-------AATAAA-AA--AAAAA--CCATGCACA---GCC--------------CTACTTTAAAACAAAAT----ATGAGTG-AC--ACAC
gi|16 : -----CTTG-AACTG-TTTTC-AT-GCTTATTGAACTGTTTAAAA
gi|17 : gggactgtgTTTATTATGCACAGGAATA--CAC-AGGATTTAAAACACTGGcattgtgc
gi|2 : GCAGAGTCGGACA-TAA---TA-ATA-CAGCACATTTACTCCCA-GATC---ATGA-CTTACAC--TATATCT---AGAGA-ATC-------T-GCGT-T--GAA--GCCGGACATTT-GTA-------AA--AATAA--A--CA--CCATG-ACA---GGCCTTTTTGACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACACATA----CATGAA--GTGGGCAAGCAG--CTA----G----------------CT--TTGAGAGCG-------A----------CATA--AGATTCGA--TAAGCTAGTGC-CTG--GGAAAAAA-CTCAATT-GGCACCATGCC--A-GCAGTATGGC-AACT-GAGAC-CAGC--A----CTGG--GAAGAAAA-CTCAATT-GGCACCATGGGATGCGCTGCC-ACCTTGAAAAAAAAGACG-CGTCATG-GCCC--CAA--CCGAATGCCTTTGGGAAA--AAACCAGAATTG-GCACCAT
gi|2 : ga----CTGG--GAAA-AAA-CTCAATT-GGCACCAT----------GCC-A-GCAGTAT-----GGCAAC----TG-AGAC--CAG--C-----AC---TGGG-AAGAAAACTC-AATTG-GCACCATGGGATGC--G-CTGCCACCTTGAAAAAAAAGACGCGTCATGGCCCCAACCGAAT--GCCTTTGGGAAAAAACCAGAATTG-GCACCAT-CGA-GTTAGGCAACTGGAG-GTCGC---GGATGGTAACTC------GCGAC--TAGAGGTAAATGCAATGGCCGCTGGCACACTACGATGC-ACTCCT--TCACTATCG-------------ACT-TCAGA--CCTGACC-AGAGA--ACAATGG-CT---CAGAACAC---G-CTAGAATTGCGTGG-AACA----------CTCAGA-------AAAA---GTGAA----TAACAT--------GGT-ATCAGA---AAGAAGACGAGAA----TGCAA--CA-AGATT--CTTGAGCGAAGTA-AAGAATAGACA----AGAGTACAGG--AGGCTAC---ATTA----ACAGCA-ACTGA--CG---GGCCCAGACTGAAGGTTATTTCCTA-GCCA-GAATCCTAGGTAGACC-AGGCTTTGGAATTCTT--CCCGGAG-TC---AT--CA--AGATTAA-CG-GGACTGGAAACTGGGCCACTACAA--ATGCT-CAGGAAT------CAACCT----CCG-GC--ATGACA-AAAGAA----TTTTGGC-GA-TCATT-ACACGAACAC-------TA-GATC-GGAATTGATTT--AACACGCATTAA-TGTGCTGAG-TAAGTGAGAT-GG-AA-TCATAC---ACAG-TCC-TG-CTGA-GAAGC---TGG----------ATAGAACTGT-----AC--GGGAAAAAATCTA-G-AACCTTAGGGAAGGCACT--CACTCCTGATTCACGCTACTAATA----CGGCGTGCTAACAC-TCTGCGG------TG--AA-------C--GAC--TTG-GTCGC-GGAT-GCCC---AGAAA---AACGATTATC-------AGACCA-TAA----GAACAGGAT-TATC-CCGCAG-ACT--AGTTGACAGAATATCTG----C-CGATTAACC--AGCAGAG---AAAAACAATCAGAAGGGA-CCT-TGC-ACACAGTGGCGGGGAAATTAGAAACTGGATCAGTGGACTGAGTCCGGAA-GAACAAGCGGAGATCGAT-GAATAATGATTGGACATCCCG-TACCTGGCC--AAACCTGCTGTGAAGAGACGAG---AAAACGT-AG-AGAGTGTGG--ATC--CCCGCACCTA-------CTAAGAACCCGCT-AAAAAGAAGC-AA-AAACTGAGCCGAAAGTAAAAC-----CTT-GAACTGTTTTTTTATAGCC------ACGG---------TGGTT---T-----AAGCCCTTAGGGTG------AGGCTGTTTTA----TGT---CT-TG-GTGTG-TTT-----ATAAACATGTAAGACTTAGATACTTGGTGTTAGTCTTTATTATGCA-AGAATTAAGCAC-AGG----AATGAACTGG-ATTTCcgagttaggcaactggaggtcgcggatggtaactcgcgactagaggtaaatgcaatggccgctggcacactacgatgcactccttcactatcgacttcagacctgaccagagaacaatggctcagaacacgctagaattgcgtggaacactcagaaaaagtgaataacatggtatcagaaagaagacgagaatgcaacaagattcttgagcgaagtaaagaatagacaagagtacaggaggctacattaacagcaactgacgggcccagactgaaggttatttcctagccagaatcctaggtagaccaggctttggaattcttcccggagtcatcaagattaacgggactggaaactgggccactacaaatgctcaggaatcaacctccggcatgacaaaagaattttggcgatcattacacgaacactagatcggaattgatttaacacgcattaatgtgctgagtaagtgagatggaatcatacacagtcctgctgagaagctggatagaactgtacgggaaaaaatctagaaccttagggaaggcactcactcctgattcacgctactaatacggcgtgctaacactctgcggtgaacgacttggtcgcggatgcccagaaaaacgattatcagaccataagaacaggattatcccgcagactagttgacagaatatctgccgattaaccagcagagaaaaacaatcagaagggaccttgcacacagtggcggggaaattagaaactggatcagtggactgagtccggaagaacaagcggagatcgatgaataatgattggacatcccgtacctggccaaacctgctgtgaagagacgagaaaacgtagagagtgtggatccccgcacctactaagaacccgctaaaaagaagcaaaaactgagccgaaagtaaaaccttgaactgtttttttatagccacggtggtttaagcccttagggtgaggctgttttatgtcttggtgtgtttataaacatgtaagacttagatacttggtgttagtctttattatgcaagaattaagcacaggaatgaactggatttctgcgacggcataacattcgctaaagtgtgatcattttgacgtcatagcatgctctctggcagtgtccagatttcagaaaatgagcttcagcctttccacgaactcaaaacagtagaccacggcaatagccaacttataaaccgaaactctaaacccggctcggggctcaacgggcaataaagcgacgccgagtgctataaacccggcggctcgaccggctcacaggccgatgctatataacttcaggccgtgctataagaacgcgccgggtcactcgggcctctaaaacccgcggctggccggtgctacccggcgaaccctgctgggtcaaactgctgacaatcacatgacctctttgcatacaaagttgcactcaggttgaaccacgaggacggcgcgtttagtatact
gi|2 : gagcagagtcggacataataatacagcacatttactcccagatcatgacttacactatatctagagaatctgcgttgaagccggacatttgtaaaaataaacaccatgacaggcctttttgacggggctactttaaaacaaaataatgagtgaccgacacatacatgaagtgggcaagcagctagctttgagagcgacataagattcgataagctagtgcATGCA-AGAATTAAGCACA-GGAATGAACTGGAT-TTC----T-----GC----GA-CGGCA-TA-A-CATTC----GC-TAAAGTGTGA-T-CA--TTTT-GAC-GTCATAGCATGCTC---TCTGGCAGTGTCCA-----GA-TTTCAGAA---AATGAGC-TT-CAG---CCTTTCCACGAACTCA-AAAC---AGTAGACCA-CGGC--AA-TAGCCAACTTATAAA-CCGAAACTCTA-A----------------------AC---C---CGGC-TCGGGG-CTCAAC-GGGC-AA--------TAAAGCGACGC----CGA----GTGCTATAAACCCGGCGGCTCGACCG-G-C--TCACAGGCCGATGCTATATAACTTCAGGCCGTGCTATAAGAACGCGCCGGGTCACTCGGG-----------C--CTCTAAAACC--C--GCGGC-TGGCCGGTGCTACCCGGCGAACCCTGCTGGG-TCAA---ACTGCT-GAC--AATCA-------CAT-----GACCTC-TTTGCA-TACAAAGTTGCACTCAGGTTGAACCtgcgacggcataacattcgctaaagtgtgatcattttgacgtcatagcatgctctctggcagtgtccagatttcagaaaatgagcttcagcctttccacgaactcaaaacagtagaccacggcaatagccaacttataaaccgaaactctaaacccggctcggggctcaacgggcaataaagcgacgccgagtgctataaacccggcggctcgaccggctcacaggccgatgctatataacttcaggccgtgctataagaacgcgccgggtcactcgggcctctaaaacccgcggctggccggtgctacccggcgaaccctgctgggtcaaactgctgacaatcacatgacctctttgcatacaaagttgcactcaggttgaaccacgaggacggcgcgtttagtatact
gi|3 : gagcagagtcggacataataatacagcacatttactcccagatcatgacttacactatatctagagaatctgcgttgaagccggacatttgtaaaaataaacaccatgacaggcctttttgacggggctactttaaaacaaaataatgagtgaccgacacatacatgaagtgggcaagcagctagctttgagagcgacataagattcgataagctagtgcctgggaaaaaactcaattggcaccatgccagcagtatggcaactgagaccagcactgggaagaaaactcaattggcaccatgggatgcgctgccaccttgaaaaaaaagacgcgtcatggccccaaccgaatgcctttgggaaaaaaccagaattggcaccatcgagttaggcaactggaggtcgcggatggtaactcgcgactagaggtaaatgcaatggccgctggcacactacgatgcactccttcactatcgacttcagacctgaccagagaacaatggctcagaacacgctagaattgcgtggaacactcagaaaaagtgaataacatggtatcagaaagaagacgagaatgcaacaagattcttgagcgaagtaaagaatagacaagagtacaggaggctacattaacagcaactgacgggcccagactgaaggttatttcctagccagaatcctaggtagaccaggctttggaattcttcccggagtcatcaagattaacgggactggaaactgggccactacaaatgctcaggaatcaacctccggcatgacaaaagaattttggcgatcattacacgaacactagatcggaattgatttaacacgcattaatgtgctgagtaagtgagatggaatcatacacagtcctgctgagaagctggatagaactgtacgggaaaaaatctagaaccttagggaaggcactcactcctgattcacgctactaatacggcgtgctaacactctgcggtgaacgacttggtcgcggatgcccagaaaaacgattatcagaccataagaacaggattatcccgcagactagttgacagaatatctgccgattaaccagcagagaaaaacaatcagaagggaccttgcacacagtggcggggaaattagaaactggatcagtggactgagtccggaagaacaagcggagatcgatgaataatgattggacatcccgtacctggccaaacctgctgtgaagagacgagaaaacgtagagagtgtggatccccgcacctactaagaacccgctaaaaagaagcaaaaactgagccgaaagtaaaaccttgaactgtttttttatagccacggtggtttaagcccttagggtgaggctgttttatgtcttggtgtgtttataaacatgtaagacttagatacttggtgttagtctttattTTCTTGTAACCCGACC----AGTTGTACCGTGGAATACACGTGAGATTTGTGTAAGGCAGCG-GATGATCGCTCCAGCGGGAAAGTACAG--AGCAATTTCGGGCGAATTACTTTGTTCT-TCAGTG-TATAGATAGATTTTTCTGTCT-TAGACACTGGGTA-TACA-TCTGAGGGAAACTAT------TTAATGGTACATAATTGAT--GTTCGC-CATCGA--AATTTC-GCCTCGGACCATATC-AAAAATCGTGGCGGTT----TGATT--ATTCTTAGTATTGCGTCCCATCTTATTTC-GAACTCGTAGTTGGAAG--ATATCT------TGCCTGCTGATTTGTTTTTCTAGAGAGAACCCATGTAACTGAAAAGTCGTCTGATGATA-ACCGTATC---CACTAGTATAGTCT--TAGCCAGT---TATATAGTGTTTAATGAACGGCTACTACAAacgaggacggcgcgtttagtatact
gi|3 : TATGGAGAAATTGTTTGAGTGCATAGCAGGCAGGATGTGGGAAAAACCGTTAC-GTGATGCGTTTTCAGGGGACGAAGAGCT---CA-CAAATTTACCTAGCAGCACA-TACATCACACGAACTATATGAGCTTACACCGTGTTTCTATCAGAAGCAGCAGCCTATC-ACAT-TTAGAAGTGCTGACCAGTTGCTACTCAACTAGCATATAATTAGGTAGTCTATGCACAAGCGTCCCTTTTTATATGTGCTACTTTTAAA-AAAATGGAAATTTATATACCG---CAAA----GTCGGACTGTAAGCAGGCAGCTCTGTCACGGATAACACCCATTGCTCTCGTTAAGTGCATCCGTCCAAATTGGCCACTA----------GACTCG-----GCATACTAGAGGTAGAACTCTCAATT-GGCATCCATGCCTACGCT---TGGC-A--CTGAAGC-CTACA-GATCCCTCG--GAAA-AAA-CTCAATT-GGC-CCAT-------G--GCC-AGTCTG--------GAC--------G-AG-C--CAGT-C-----AC---TGGG--G--AAACC---ACTGTGCACAATGtgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaattggccactagactcggcatactagaggtagaactctcaattggcatccatgcctacgcttggcactgaagcctacagatccctcggaaaaaactcaattggcccatggccagtctggacgagccagtcactggggaaaccactgtgcacaatgtcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|3 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagc----TGGCCA--C-TAGACTCGGCATA----CTAGAGGTAG-AACTCTCAATT-GGCATC--------CA-TGCCTACGCTT--------GGCA-C----TGAAGCCTACAGATC-----CC---TCGG-AA--AAAACTCAATTG-GC-CCATG----GCCAGTCTG----------------GACG------------AGCC-----AGTCACTGGGG--AAACC---ACTGTGCACAATGTCAAGATGGGC------AGTCTACCTCTGGCT------TCTCAAATGAAGC-AGATAA--GAA-GCAA-----AATCGAGCTCTGG---GCGACT-CTAATCAA-ATCGGGGTCACATCCTGACTATCA-A--CCTGACCTAGAGAGCAC-ATGGGCTGCGTAGAAACTTCAG-CTAGAAATTCGTGGTAA-AGTATGCAGAGCTTAGAGTACACGAAAACACGTGGACGACTACCATTCATTTGTGGTAA-CAGATACAA-TAGTCTCGAAAAAATGCAAACCACAGATTGTCTTGAGCGCACGTTAT-AATGTACGCGGGAGGTTACAGGCCAGGTTACTATTTTGTATCACAGCAGACTGATAAGAAAGGCAAGAATTGAGtcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|4 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaatGAGTACAAACCGTTAG-AGA-TGTGG-AATCTGCCCGTACCTAAACAAAGTGAAGAA-CCGCCTAAAAAGAAG--AAGAAACTTAGCCGAAAGTAAAAA-----C--GGGACTG-TGCTTTA--G-T----GAACTGT-----------TTTTAT---------GCTT-AACTGT-TTTTA--------AAACATTGTGCATTGTTC-T-TGTTTTCCTTAATAAACATGT-AAACTTAAAC-CTT-GTGTTATTCTT-----------------------GGGATTTA-------------TTATGGATTTA--------ATACACAGGAATA--CACA-AAATTTCACAGGAT-TTT--A-T-----GCCTTGGATCG--A-TACA-CAT-T----CC-TAA-GTGTGC-TACATTTTTTTGAC-GTCATA--ATGCTTTTCTCCA--AGTACAGCCAAATGA-CGTCACAA---TAG-AGC-TCGCGCT--CCTGTGCTAAAACCTGCACTCTAAACTAGCCCAGCGGC--AA-T------------A---CAC---TCTAC-----------------------GC---CATAC-GC-TCTGAACCCCGGCCGGGCCTA------------------C----CGG----C--CTCTAAACTCAC--------CCGTG-CTAT---AGCCCGGAC-------AC------CCCTGCAG------------GGGTCA----AA-----------TCGCTT---GACCAATCAGCAT
gi|5 : aAAGAAGA-A-GAAACTGAGCCGAAAGTAGAGATGGTGCTTG-AACTG-TTTTT-AT-GCT----GAACTGTTT--------------------AAAAACT-GA----------------TTTAAAAAC-AT---TG-TGCAT-TG-TT-CTTTAATAAACATGTAAA-CTTAAAC-CTTG-TGTTAGTCTTTATTATGCACAGGAATA--CAC-AGGATTTAATACAGAGGAAT--------------------ACACA-AGAATTT--TACT-GGATTTCACTGGAT-TTT--A-T-----GC----GATCG--A-TA-AACA--CATT-CC-TAA-GTGTGC-TACAG-TTTTTGAC-GTCATA--ATGCTC---TCCA--AGT---------------CCAAAACCGAAT-GAC-TT-CACAATCCTGTGCTAAACCTGC-ACTCTCAACTAGGCCAGCGGCTTAACT------------AGACCGA---CCTATAAACCGGCCTCTAAACCCGGTCGGCTCAC---CGGC-TCTAGA-CCCGGCCGG-CTCACCGGTTA-TAAA----C-CAGGCCGG----G--CTCTAGACACGG--------CCG-G-G--T---AG-CCGGCG-------AC------CCCTG-TG------------G---CA----AAACTGCGCATGTC--CTT---GACC--CCAGCGTCCTAGATATTG-AAC----C-ACCCAT-CGGGAGtgacctcatttgcataaaaagtgcactcagttgacctccctatcgaggg
gi|6 : GAA-CTGGGCCTCTACAGATCC-CTGCAG-AAC------GAGC-T----CCG-GCC-AGGAAC-AAAGAA--GA-TTTTGCGGA-TCATTACCACCACCAC-------TAGGA-CGGGGATCG--TTAGAAC-CGCATTAATTGTGCTGAGGTAA-TGAGATGGG-AA-TC-TACCGAGCAGTTCC-TG-CTGAAGAAGCTATTGGCACGTTTCCCA-AGAACTGGGTATCACGTGGGCAAAAATCTA-GTAACcgtttatac
gi|6 : ATT-ACGCTACTAACATCCTC--CGTGCTA-CACCT-TGCGGTTGTTCGGCCAAA------CAGGACATTTG-GTCGCatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatattacgctactaacatcctccgtgctacaccttgcggttgttcggccaaacaggacatttggtcgc
gi|7 : gaactgggcctctacagatccctgcagaacgagctccggccaggaacaaagaagattttgcggatcattaccaccaccactaggacggggatcgttagaaccgcattaattgtgctgaggtaatgagatgggaatctaccgagcagttcctgctgaagaagctattggcacgtttcccaagaactgggtatcacgtgggcaaaaatctagtaacatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatATGA-CGCG--AGAGGAAA--TACAGGCAATA-----GAG-GAATGA------TTCACCAGTTCTA-GGA-AGAT-----TATGGATAGACG--AAGTA-T--AGTCT--GGCGGA--ATAAAGTGTTA---GTACAGA---GATGCG-TCGCGCATCGATTTA---CAGC--TGGAC--GATCTAAAAAATTGGGTG--TTTTATGAGTTCAT-----GTATTGCGTC----CCCAT---GGAAC-----GTAGGAAGGAATAT-TACTGGCCGCC---------GTTTT--TAG-GCGA---CATGTA--TGAAAAA------------AGACC---TCTGGTATCAGT-C-TGGTTGTA-CAAGTGCTTATACGTTAT----TGAACGGC-ACTGC
gi|8 : gcCC-AGGCTTAGGATTTTTTTTCCCGGAGATCCCAGAATCAGAAGATGTAACA-GGGATGGAA-CTGGGTCTTTACAA--CC-CT-CAG-AAT------GAGCCT----CCG-GCC-ATAAAC-AAAGAA--GATTTT-GC-GA-TCATTTCCACGA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGA-GTAA-TGAGATTGGAAA-TCATACC--ACAG-TCC-T-ACTGAAGAAGC---TGG----------A-AAAACTG------AC-----C-----TCTA-A-AAACCTAGG-AAGGAA-TA-CACCCCAGATT-ACGCTACTAAC-----C--CGTGCTA-CAC-T-TGCGG------AC--AAtaatgaaagatttggg
gi|9 : gacCC-ATGACCCAAAGAATAGATTTT-GC-TACTCATTTCCACC--CACGTTAGGTTA-GA-C-GGGATAG--TC--AAC-AGAATTAA-TGTGTGGAGA-GA-TGAGATTGGAAA-CCATACA--AGAA-TCC-T-ACTGAAGAAGA---TGA----------A-GGAGCTG------AC---GGCAAAAAT--------CCCAAGG-ACGG-A-----ACT---------CGCCACTAAC-----C--CATGCTA-CAC-C-TGTGG------AG--AAATACTAGTAGGAC-ATTG-GT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CCCCCAAACTTGACCCAAGTTAATATATAACTTATTTGTTACCTGCGTCCGCCCGTTAGGTACTAG
Unaligned ( gi|18 ): GCATCCTAGATATTGAACCGGCCATCAGGACAGTTTATA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111
lowQualScore : 222 2222 2222 1 222 11 1111 1 11 111 33333 1 333333 1 1 1 6666666666 11 1 1 4444444444444 222 222 22 1 333333333 111 11 22222 33333333 333333333 55555555555555555555 111 2222 1 1 444444444 1 1 222 2222 2222222 777777777777777777 222222222222 11111 1 3333 1 11 1 222 11 11 1 1111 2222222222222 1 1 2 1 11 111 1 333333333 1111 11 11 3333333 1 111111111 111 222222 22222 1 111 2222222222 1 1 11 77777777777777777777777777777777777777777777777777777777777777777777777777777 1 33 1 3333333333 111111 1 3333333 111 11 888888888888888888888888888888888888888 11 3333333333333 11111 1111 111111111111111111111111111111111111111111111111111111111111 22222 1 22 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 2222 11 1 222222 444 1 4444444 4444444 222 33333 55555555 111 1 22222222 11 111 22 4444444 11 222 22 2222222222222 11 22222 1 1 11 1 11 1 44444444444 1 11111 222222 1111 11111 2222222222222 1 111 22 1111 3333333333 33333333333 111 1 444444 33333333 111 3333333333333333333 11 22222 3333333 33333333 1 1 2222222222222 1 1 333333 11 333 22 1 1 1 1 1 1 1 222 1 1 222 1 11 1 1 1 2 1 11 4444444444 1 1 11 22222 1 22 222222 777777777777777777777777777777777777777777 1 1 3333333 1 1 11 88888888888888888888888 111 11 2222222222222222 5555555555 11 11 11 222222 666666666666666666 111 1111 222 1111 11 22222222222222 44444444444444 1111 8888888888888888888888888 222222222 5555555555555555555555555555555555 11111111 66666666666666666666666666666 11 44444444444444 11 222 22 66666666666666 2 11 2
lowQualScore : 111 3333 3333 22 5 111 77 8888 6 3 99 555 33333 3 888888 88 3 3 3 6666666666 88 3 2 1111111111111 333 333 88 3 7 777777777 555 88 77777 44444444 333333333 77777777777777777777 1 333 7777 3 3 555555555 2 3 333 4444 4444444 666666666666666666 666666666666 88888 3 9999 3 1 88 1 5 222 1 88 1 66 5 5555 8888888888888 7 3 3 3 0 22 777 0 1 666666666 4444 33 88 2222222 0 3 888888888 55 777 0 22 3 444444 55 44444 0 444 1 4444444444 2 2 00 66666666666666666666666666666666666666666666666666666666666666666666666666666 7 3 33 3 3 3333333333 888888 0 4 7777777 444 8 8 8 88 444444444444444444444444444444444444444 8 5 11 1111111111111 8 33333 7777 5 0 0 555555555555555555555555555555555555555555555555555555555555 1 7 77777 3 44 00 4 1 6 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 7777 44 2 6 777777 7 111 3 7 5555555 4444444 333 55555 88888888 777 5 99999999 7 88 777 00 5555555 7 44 6 000 88 9999999999999 44 22222 1 3 3 88 0 1 1 33 0 66666666666 2 3 0 8 22222 8 8 333333 7777 8 6 1 6 88888 7 6 6 7 6666666666666 6 6 6 99 99 6 6 3 6 3 3 6 111 0 8 8 55 0 4444 5555555555 8 3 33333333333 0 444 0 888888 2 3 8 88888888 8 000 1111111111111111111 0 11 8 6 7 6 33333 0 1111111 6 11111111 3 3 6 7777777777777 3 2 555555 88 777 7 00 7 3 5 5 5 5 1 1 5 5 111 1 5 5 1 111 5 88 5 5 1 7 7 3 6 3 7 88 9999999999 3 3 99 55 2 3 00000 0 3 55 8 222222 0 22 333333333333333333333333333333333333333333 3 3 5 3 44 0 2222222 666 3 3 0 55 0 5 0 1 99 8 0 11 1 55555555555555555555555 444 1 6 66 1 6 88 4444444444444444 4444444444 22 11 88 99 22 111111 444444444444444444 0 444 8 5555 222 1 8 44 0000 22 00 55555555555555 6 6 0 11111111111111 6 6 6 5555 6 2 9999999999999999999999999 111111111 5 77 5 5555555555555555555555555555555555 33333333 00000000000000000000000000000 11 0 66666666666666 99 22 0 0 555 22 33333333333333 7 3 1 44 3 7 2
lowQualScore : ... .... .... .. . ... .. .... . . .. ... ..... . ...... .. . . . .......... .. . . ............. ... ... .. . . ......... ... .. ..... ........ ......... .................... . ... .... . . ......... . . ... .... ....... .................. ............ ..... . .... . . .. . . ... . .. . .. . .... ............. . . . . . .. ... . . ......... .... .. .. ....... . . ......... .. ... . .. . ...... .. ..... . ... . .......... . . .. ............................................................................. . . .. . . .......... ...... . . ....... ... . . . .. ....................................... . . .. ............. . ..... .... . . . ............................................................ . . ..... . .. .. . . . ............................................................................................................. . .... .. . . ...... . ... . . ....... ....... ... ..... ........ ... . ........ . .. ... .. ....... . .. . ... .. ............. .. ..... . . . .. . . . .. . ........... . . . . ..... . . ...... .... . . . . ..... . . . . ............. . . . .. .. . . . . . . . ... . . . .. . .... .......... . . ........... . ... . ...... . . . ........ . ... ................... . .. . . . . ..... . ....... . ........ . . . ............. . . ...... .. ... . .. . . . . . . . . . . ... . . . . ... . .. . . . . . . . . . .. .......... . . .. .. . . ..... . . .. . ...... . .. .......................................... . . . . .. . ....... ... . . . .. . . . . .. . . .. . ....................... ... . . .. . . .. ................ .......... .. .. .. .. .. ...... .................. . ... . .... ... . . .. .... .. .. .............. . . . .............. . . . .... . . ......................... ......... . .. . .................................. ........ ............................. .. . .............. .. .. . . ... .. .............. . . . .. . . .
lowQualScore : 000 0000 0000 00 5 000 55 0000 7 3 77 333 33333 3 333333 33 3 3 3 7777777777 33 3 0 0000000000000 333 333 33 3 3 777777777 333 33 77777 33333333 777777777 00000000000000000000 0 000 0000 3 3 333333333 3 3 333 3333 7777777 000000000000000000 777777777777 00000 3 7777 3 0 55 0 5 000 0 55 0 55 0 7777 3333333333333 3 3 3 7 0 55 555 0 2 555555555 2222 88 00 5555555 8 2 555555555 00 555 2 88 0 222222 88 00000 0 555 0 3333333333 0 0 33 33333333333333333333333333333333333333333333333333333333333333333333333333333 3 3 77 7 3 9999999999 888888 0 2 2222222 000 0 0 0 66 888888888888888888888888888888888888888 0 0 00 8888888888888 0 88888 0000 6 8 8 000000000000000000000000000000000000000000000000000000000000 0 3 77777 3 33 00 0 0 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 7777 77 0 7 777777 3 777 3 3 7777777 0000000 333 33333 77777777 777 0 77777777 3 33 777 77 7777777 3 00 7 333 33 0000000000000 00 33333 0 3 3 33 0 2 0 22 0 00000000000 5 2 0 0 22222 0 0 000000 0000 0 7 5 7 00000 2 7 7 8 7777777777777 7 7 7 22 22 7 7 7 7 2 3 7 777 8 0 0 44 8 8888 0000000000 0 2 00000000000 8 222 0 000000 5 5 0 44444444 0 000 3333333333333333333 8 66 0 7 3 7 33333 7 7777777 7 77777777 3 3 7 7777777777777 3 0 000000 33 777 3 77 3 3 5 0 0 0 0 0 0 0 000 0 0 0 0 000 0 00 0 5 0 3 3 3 7 3 3 33 0000000000 3 3 22 88 5 2 00000 8 2 88 0 666666 8 00 000000000000000000000000000000000000000000 5 2 5 0 55 0 5555555 555 2 2 0 00 8 6 0 0 00 0 8 88 0 88888888888888888888888 888 0 5 55 0 0 88 2222222222222222 2222222222 22 00 88 00 55 000000 000000000000000000 2 000 0 6666 000 0 8 66 1111 00 33 22222222222222 7 7 7 55555555555555 7 7 7 3333 7 5 0000000000000000000000000 444444444 7 99 7 9999999999999999999999999999999999 00000000 66666666666666666666666666666 22 8 88888888888888 88 88 7 7 777 00 33333333333333 3 3 0 77 3 3 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACCGCACAGTCGTACCGTGGANNACACGTGAGACTTGTGTAAGGCAGCGGATGA-CGCGCCAGC-GGAAAGTACAGG-AGTA-----GAG-GAATTA------TCNACCAGTG-TA-AGA-AGATTA---TG--T-TAGACG--AGGTA-TACGTCTGGGGG-AA-TAAAGT-TTA---GTACAGA---GATG--TCGC-CATCGATTAA--C-GCC--GGACCG-ATC--AAAAA--T--TGGCGG--TT-TGAGT--AT-----GTATTGCGTCCC--CC-AT---G-AAC----AGTNGGAAGGAATAT--C-TG-CC-GCCG-------TTTCTAG-GCGA---CATGT-AC-TGAAAAAAG-CC-TCTGA-------------CACCAGTACACGNTT-TA-CCAGT-TTT-ATA-CGTTAT-TGAACGGC-ACTNCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGAAATTGTTTNGGTGCATAGCAGGCNGGATGTGGGAAAAACCGNTANAGTGATGCGTTTCCGGGGGACGAAGAG-CT-GACA-TAA--TACATA-CAGCACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAATA--CCATGCACA---GCCCCTTTTTACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACACAAA--CATGAA--GTGGGCAGGCAGCCCTA----G----------------CTCGTTAAG-GCG-------AAATTGGCCACCATG--A---GACTCG---AGCC-GCGCACT-GGG--AAAAANCTCAATTGG-CATCATTGC--A-GC----TGGC-A--C-GAGGC-CGGCA-A----CT---GGGAA-AAAA-CTCAATT-GGCA-CCAT------CGCTGCCANGC--TG--------GGCA-C----TGA-GCC--CAG--C-----AC---T-GGG-AA--AAACTC--AATTGGCACCAT-G---TGCCAGT-G-C-AC--TGAGAA----GACGCGTN-TGGC---AGC---CGANT-AGNCACTGGGGAAAAACC-A---TTG-GCACCGTG-CGAGNTGGGCA-C-TG-AGCTAGC-CTGGATGG-AACTCT---ACGA-GC-ATANAAG--AA-GCAA-AGCCGCT-GC-C-C-G----GC-ACTC-T--TCACTATCG---TCACATC--GACT-TCA-A--CCTGACCTAGAGAGCACATGG-CT---CAGAAAAC---AGC-TAGAAATTCGTGGAACA------AGAGCTCAGAA-----GGAAA---GTGAACGA-TAACAT--------GGT-A-CAGAAA-AAGA--CT-G--AAAATGCAA--CA-A-GATT-TCTTGAGCGAA---A---AGAATAGACG-GGGAG-TTACAGG--AGGCTACTACATTG----ACAGCAGACTGA-AAGAAAGGCCAAGACTGAGGGTTNTTACCTAG-CCA-GAATCCTA--CAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGCAACG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GATTTTTGC-GA-TCATTTCCACNA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TGACTGAAGAAGC---TGG----------A-AGAACTG------AC--GGGCAAAAATCTA-G-AACCCTAGG-AAGG-A-T--CACTCCAGATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AA-GCAACGTTTATCCGC----AGACCAGTAA---AGAA-AG-AT-TATCCCGCAG-ACCCCAGT--A-AGAA-ATCCGG---C-CGATAAACC--AGCAGAA-CGAAACACAAACA-AAGGGATCCT-TGCTACACAGTGGCGGGNAAATTAGGNACTGGATCAGTGGACTGAGTCCGNAAGGAACAAGCGGAGATCGATGGAANGATGATTGGGCATCCCGCTACCTGGCCCAAAACCCGCTGTGAAGAGANGAGTACAAACCGTTAG-AGA-TGTG-GAATC--CCCGCACCTAA-C-----GAAGAA-CCGCC-AAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTGGAACTGTTTTTTTAT-GCT----GAACTGTTTAAA--TG-TTT--T-----AAG--CTTGAACTGT-TTTTA-GCTGTTTAAAAACTGTTNTGCAT-TG-------TTTCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATGCACAGGAATA--CAC-AGGATTTAATACACTGGAATTTCACGGATTTA--------ATACA-A-GGAATACACA-GGATTTCACTGGAT-TTT-----A-T--GC----GATCGA---T-AACA-CATTCC--TAAGTGTGC-TACA--TTTTTGAC-GTCATAATGC---TCTCCAAGTGC--------GA-TTTCAGAA---AAT-AGC-TT-CAC---CCTNTNCTAAAACTCG-ANNCTAAACTAGACCAG---CGG----C--AA-TAG-CCGACCTA-CAAC--TCCG---G-C-TCTAAA-CCCGGCC--GGGCTC-ACCGG-C--TAAA-C----CCG---G----GCTC--------TA-AAC--CC-GGCCG-G---C--TA---------G-C------------CCGGCGACCCCTGCTGGGGTCAAA-----------C--CTC---GACC--CCAGCGTCCTAGCTATTGCAACC---C-----ACCC-TGCCGGGGTCAAACCGC-GCTTGAC-CAATCAG------CATTG--TGACCTCATTTGCA-TAAAAAGTTGCACTCA-GTTGAACCTCCCTATNGAGGG
Reference ( family-3 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACCGCACAGTCGTACCGTGGANNACACGTGAGACTTGTGTAAGGCAGCGGATGA-CGCGCCAGC-GGAAAATACAGG-AGTA-----GAG-GAATTA------TCNACCAGTG-TA-AGA-AGATT----TG--T-TAGACG--AGGTA-TACATCTGGGGGGAA-TAAAGT-TTA---GTACAGA---GATG-GTCGC-CATCGATTAA--CCGCC-CGGACCG-ATC--AAAAA--T--TGGCGGTTTT-TGAGT--AT-----GTATTGCGTCCC--CCCAT---G-AAC----AGTNGGAAGGAATAT--C-TG-CC-GCCG-------TTTTTAG-GCGA---CATGT-AC-TGAAAAGAGACCTTCTGG-------------CACCAGTACACGNTTGTA-CCAGT-CTT-ATA-CGTTGTATGAACGGC-ACTNCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGAAATTGTTTNGGTGCATAGCAGGCNGGATGTGGGAAAAACCGNTANAGTGATGCGTTTCCGGGGGACGAAGAG-CT-GACA-TAA--TACATA-CAGCACATTACCTCCCA-GATC-ATATGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAATA--CCATGCACA---GCCCCTTTTTACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACACANA--CATGAA--GTGGGCAGGCAGCCCTA----G----------------CTCGTTAAG-GCG-------AAATTGGCCACCATG--AG-TGACCCG---AGCC-GCGCACT-GGGGNAAAAACCTCAATTGG-CATCATTGC--A-GC----TGGC-A--C-GAGGC-CGGCA-A----CT---GGGAA-AAAA-CTCAATT-GGCA-CCAT------CGCTGCCANGC--TG-------AGGCA-C----TGA-GCC--CAG--C-----AC---T-GGG-AA--AAAC-C--AATTGGCACCAT-G---TGCCAGCTG-C-AC--TGAGAA----GACGCGTC-TGGC---AGC---CGAGT-AGNCACTGGGGAAAAACC-A---TTG-GCACCGTG-CAAGNTGGGCA-C-TG-AGCTAGC-CTGGATGG-AACTCT---ACGG-GC-ATANAGG--AA-GCAA-GGCCGCTCGCGC-CTG----GC-ACTCCT--TCACTATCG---TCACATC--GACT-TCA-A--CCTGACCTAGAGAGCACATGGGCT---CAGAAAAC--CAGC-TAGAAATTCGTGGAACA------AGAGCTCAGAA-----GAAAA---GTGAACGA-TAACAT-------TGGT-A-CAGAAAGAAGA--CTNG--AAAATGCAA--CA-A-GATT-TCTTGAGCGAA---A---AGAATAGACG-GGGAGNTTACAGG-CAGGCTACTACATTG----ACAGCAGACTGA-AAGAAAGGCCAAGACTGAGGGTTNTTACCTAG-CCA-GAATCCTA--CAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGCAACG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GATTTTTGC-GA-TCATTTCCACNA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TGACTGAAGAAGC---TGG----------A-AGAACTG------AC--GGGCAAAAATCTA-G-AACCCTAGG-AAGG-A-T--CACTCCAGATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AA-GCAACGTTTATCCGC----AGACCAGTAA---AGAAGAG-AT-TATCCCGCAG-ACCCCAGT--A-AGAA-ATCCGGC--C-CGATAAACC--AGCAGAA-CGAAACACAAACA-AAGGGATCCT-TGCTACACAGTGGCGGGNAAATTAGGNACTGGATCAGTGGACTGAGTCCGNAAGGAACAAGCGGAGATCGATGGAANGATGATTGGGCATCCCGCTACCTGGCCCAAAACCCGCTGTGAAGAGANGAGTACAAACCGTTAG-AGA-TGTG-GAATC--CCCGCACCTAACC-----GAAGAA-CCGCC-AAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTGGAACTGTTTTTTTAT-GCT----GAACTGTTTAAA--TG-TTTCAT-----AAAAACTTGAACTGT-TTTTA-GCTGTTTAAAAACTGTTTTGCGT-TG-------TTTCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATGCACAGGAATA--CAC-AGGATTTAATACACTGGAATTTCACGGATTTA--------ATACA-A-GGANTACACA-GGATTTCACTGGAT-TTT-----A-T--GC----GATCGA---T-AACATCATTCC--TAAGTGTGC-TACA--TTTTTGAC-GTCATAATGC---TCTCCGAGTGC--------GA-TTTCAGAA---AAT-AGC-TT-CAC---CCTNTNCTAAAACTCG-ANNCTAAACTAGACCAG---CGG----C--AA-TAG-CCGATCTA-CAGC--TCCG---G-C-TCTAAA-CCCGGCC--GGGCTC-ACCGG----TAAA-C----CCG---G----GCTC--------TA-AAC--CC-GGCCG-G---C--TA---------G-C------------CCGGCGACCCCTGCTGGGGTCAAA-----------C--CTC---GACC--CCAGCGTCCTAGCTATTGCAACC---C-----ACCC-TGCCGGGGCCAGACCACCGCTTGACTCAATCAGAAGCCGCATTGCTTGACCTCATTTGCAGTANAAAGTTGCACTCAGGTTGAACCTCCCTATGGAGGG
gi|1 : TTCTTGT---CTGACCGCACAGTCAT----TGGATAACACG-GAGACTT-T-TAAG--AGCAGA----CGCGCCAAC-GGATAA-ACAGA-AGTA-----GAG-GAATTA------TCAACCAGTG-TA-AGA-AGATTA---TG--T-TAGACG--AGATGCTATATCTGGG-------AAAAT-TTA---GTACAGA---GATG--TCGC-CATCGATTAA--C-GCT-GGAGCCG-ATC--AAAAAATT--TGGTG----T-TGAGT--AT-----GTATTGCGTCCC--CC-AT---G-AAC----AGTGGGAAAGA-TAT--T-TG-CC-GC-G-------TTT--AG-GCGA---CATGT-ACCTGAAAAAAACCTTTCTAA-------------CA--AGTACACGATT--A-CCAGT-TTTTATA-CGT-AT-TGAACGGC-ACTTCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGA--TTGTTTTGG-GC-T-GCAGGCTGGATGTGGGAAA--CCGGTAAAGTAATGCGTTTCCGGGAGA-GAAGAG-CTCGACAATAA--TACA------CACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGTATT-GAA--GCCGGACATTTTGTA-------AAAAAATAA--AAATA--CCAT-CACA---GCCCCTTTTTA-G-GGCCTACTTTAAA-CAAAAT---A-TGAGTG-ACACACACAAAAACAT-AA--GTG--CA--CTGCCCTA----G----------------TTCGTTAAG-GC---------AATTGGCCACCATGCCAGCTGACCTG---AGCC--CGCACT-GGG--AAAAACCCTAATTGGGCATCATTGC--A-GC----TGGC-A--C-GAGGC-CAGCA------CT---GGAAA-AAAAGCTCAATTTGGC--CCAC------CACTGCCAAGC--TG-------CG-CA-C----TGA-GCC--CAG--C-----AC---T-GGG-AA--AAAC-C--A-TTGGCACT-------TGCCAGTAGAC-AC--TGAGAA------CCATTT-TGGC----GC---TGAGTCAGGCACTGGGGAAAAACCCA---TTG-GCACTGTG-CCAGCTGG-CA-CCTG-AGCCAGCACTGGAGAA-AATTTT---ACGG-GCTATAAAA---AG-GCAG-AGCC-CTCGC-------------ACTC----TCACT--CT---TCACATC--GACT-TCA-GACCCTGACCT-GAGA--ACATGG-CT---CAGAAAAC---AGCCTAGAAATTCGTGGA-CA------AGAGCTCAGAA-----GGAAA---GTGAATAA--AACAT-------GGCT-A-CAGAAA-AAGA--CTGG--AA--TGCAA--CA-AAGATT-TCTTGAGCGAA---A---AGA-TAGACA-GGGAGCT--CAGC-GAGGCT--TACATGG----ACAGCAG-CTGA-AA-AAAGGCCAAGACTGAGAGTTTTTACCTACTCCACGAATCCTA--CAGACC-AGGCTTGGGATTTTTTT-CCCGGAG-TC---G---CAAAAGATGCA-CGCGGACTGGAA-CTGG-CCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GATTT--GC-GA-TCATTACCACCA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGATAA-TGAGATTGG-AA-TCATACC--AC-G-TCCTTGCCTGAAGAAGC----GG----------A-A-AACTG------AC--GGGCAAAAATCTAGG-AACCCTAGG-AAGG-A-TTACACTCCAGATT-ACGCTA-TAAC-----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AAGGCAGCATTTATCCGC----AGACCAGTAA---AGAA-AG-ATGTAT-CCGCAG-A--CCAGT--A-AGAA-AT-CGGG--C-CGATAAACC--AGCAGAAGTAAAACACAAACA-AAGGGATCCTGTGCTACA-AGT-GC-GGTAAATTAGGCACT-GATCAGT-GACTG---TCGCAAGGAACAAGCGGAGATCGATGGAAGGATGATTGGG---CCCGCTACCTGGCTCAAAACCCG-TGTG-AGAGAAGAGTACAAACCGTTAGCAGATTGTGAGAATC--CCCGCACC--ACT-----GAAGAA-CCGCC-TAAAAGAAGAGAAGAAA-TGAGCCG-AAGTAAAAA-----CTTGAAACTGTTTTTTTAT-GCT----G---T-TTTAAAACTGTTTTCATTGTTAAAAAACTTGAACTGTATTTTATGCTGTTTAAAAACTGTTTTACAT-TG-------TTTCTTTAATAAACATGTAAAACTAAAAC-CTTGGTGTTAGTCTTTA-TATGCAGAGGAATAC-CACAAGGATTTTATACACTGGAATTTCACAGATTTATGCGATCGATACA-G-GGAATACACAGGGAATACAC-GGATATTT-----ATT--GC----GATCGA-------------TTC--TAAGTGTGC-TACA--TTTTTGACAGTCATAATGC---CTCCCAAGTGC--------GATTTTCAGAA---AAT-AGCTTT-CAC---CCTTTTCCACAACTCA-AAGCGAAAGTAGACCA----CGG----C--AA-TAG-CCAACCTA-TAGC--TCCG---G-CATCTAAA-CCCGGCC--ATGCTT-A--------TTAA-C----CCG---G----ACTC--------TA-AAC--CC-GGCCG-G---C--TA---------G-C------------CCGGCGACCCCTGCTGGGGTCAAA--------------CTT---GACC--C---CGTCCTAGCTATTGCAA-C---C-----GCCC-AATCGAGGCCAGACCACCGCTTGACTCAATCAGAAGCCGCATTGCTTGACCTCATTTGCAGTAAAAAGT--CACTCA-GTTGAACCTCCCTATGGAGGG
gi|10 : taatgaaaggcttcgaacacctgtatttataggtgaaaaaaaggtaatgcattcaaccgtgtctgtgcatcacgtgatcaacccccttgtgcgttagtgtgcgttagcattcaTTACCTAG-CCA-GAATATGT--CAAACCCAGCCTTAGGAGTTTTTT-CCCGGAG-TC---A---CA--ATATGCAACG-GAACTGGAA-CTAGGCCTCTACAA--CA-CG-AAG-AATGCATCGGAACCTGAGGCCGCGCCAATGAGC-AAAGAA--GA-TTTTGC-GA-TCATTTCCACG------------TA-GA-C-GGGATCA--TG--AAC-AGAATTAA-TGTGCTG-GGTGA-TGAAATTGG-AACTCATACC--Agggctata
gi|11 : G--AAA------CAGGAAAATCATGTCTTCGGATTGCTCCCCAGACAC-GCGAGATTAATTCGCCATAAGACCAGTAACACAATAGAG-AT-TATCACGCAATACCCCGTT--A-AGAA-ATTCGGCATCGCAGTAATTCGAAACTGAATCGAAAC-TAAAC--AAGGACTCCT-g
gi|12 : GATTTTACTGAAT-TTTTTACAA-TTAGC----GATCGAA--T-AACA-CATTTCCGTAAGTGTGCTTACA--
gi|13 : gagatatacacttactgcga-ACTCTAAACTAGGCTAA-----------------AG-C-GCTCTA-CA----CCCG---G-T-TATAAA-CCCGACC--GGGCTC-ACCGGGCTTTAAA-C----CTG---GCCGTGCTA--------TA-AAC--CC-GGCTG-GA--C--TA---------G-C------------CCGGCGACCCCTGCTGGGGTCAaactatatttcattacttaattgaaacgattttccatacatgctctacaaaccaaaaacc
gi|14 : cctgcGA-CTTACACC-TGTATAT---AGAAG-AAC-------CTGCGT-TT-GAA--GCCGGACATTTT-TA-------AATAAA-AA--AAAAA--CCATGCACA---GCC--------------CTACTTTAAAACAAAAT----ATGAGTG-AC--ACAC
gi|16 : -----CTTG-AACTGTTTTC--AT-GCTTATTGAACTGTTTAAA--
gi|17 : gggactgtgTTTATTATGCACAGGAATA--CAC-AGGATTTAAAACACTGGacattgtgc
gi|2 : AGAGTCG-GACA-TAA--TA-ATA-CAGCACATTTACTCCCA-GATC-AT--GA-CTTACAC--TATATCT---AGAGA-ATC-------T-GCGT-T--GAA--GCCGGACATTT-GTA-------AA--AATAA--A--CA--CCATG-ACA---GGCCTTTTTGACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACACATA--CATGAA--GTGGGCAAGCAG--CTA----G----------------CT--TTGAGAGCG-------A----------CATA--A---GATTCGATAAGCTAGTGC-CT-GGG--AAAAAACTCAATTGG-CACCATGCC--A-GCAGTATGGC-AACT-GAGAC-CAGC--A----CT---GGGAAGAAAA-CTCAATT-GGCA-CCATGGGATGCGCTGCCACCT--TGAAAAAAAAGACG-CGTCATGG-CCC--CAA--CCGAATGCCTTT-GGGAAA--AAAC-CAGAATTGGCACCATCG---AGTTAG--G-CAAC--TG-GAG----GTCGCGGA-TGGT---AACTCGCGACT-AG
gi|2 : gagc----CT---GGGAA-AAAA-CTCAATT-GGCA-CCAT----------GCCA-GCAGTA-------TGGCAAC----TGA-GAC--CAG--C-----AC---T-GGG-AAGAAAACTC--AATTGGCACCAT-GGGATGC--GCTG-CCACCTTGAAAAAAAAGACGCGTCATGGCCCCAAC---CGAAT--GCCTTTGGGAAAAAACC-AGAATTG-GCACCAT--CGAGTTAGGCAAC-TGGAGGTCGC---GGATGGTAACTC----GCGA--C--TAGAGGTAAATGCAATGGCCGCTGGCACACTACGATGC-ACTCCT--TCACTATCG-------------ACT-TCAGA--CCTGACC-AGAGAACA-ATGG-CT---CAGAACAC----GC-TAGAATTGCGTGGAACA----------CTCAGAA-------AAA---GTGAA----TAACAT--------GGT-ATCAGAAAGAAGA--C--G--AGAATGCAA--CA-A-GATT--CTTGAGCGAAGTAA---AGAATAGACA-AG-AG--TACAGG--AGGCTAC---ATTA----ACAGCA-ACTGA-CGG----GCCCAGACTGAAGGTTATTTCCTAG-CCA-GAATCCTAGGTAGACC-AGGCTTTGGAATTCTT--CCCGGAG-TC---AT--CA--AGAT-TAACG-GGACTGGAAACTGGGCCACTACAA--ATGCT-CAGGAAT------CAACCT----CCG-GC--ATGACA-AAAGAA----TTTTGGC-GA-TCATT-ACACGAACAC-------TA-GATC-GGAATTGATTT--AACACGCATTAA-TGTGCTGAG-TAAGTGAGAT-GG-AA-TCATAC---ACAG-TCC-TG-CTGA-GAAGC---TGG----------ATAGAACTGT-----AC--GGGAAAAAATCTA-G-AACCTTAGGGAAGGCACT--CACTCCTGATTCACGCTACTAATA----CGGCGTGCTAACAC-TCTGCGG------TG--AA-------C--GAC--TTG-GTCGC-GGAT-GCCC---AGA-AA---AACGATTATC-------AGACCA-TAA----GAACAGGAT-TATCCCGCAG-ACT--AGTTGACAGAATATCTG----C-CGATTAACC--AGCAGA---GAAAAACAATCAGAAGGGA-CCT-TGC-ACACAGTGGCGGGGAAATTAGAAACTGGATCAGTGGACTGAGTCCGGAA-GAACAAGCGGAGATCGAT-GAATAATGATTGGACATCCCG-TACCTGGCC--AAACCTGCTGTGAAGAGACGAG---AAAACG-TAG-AGAGTGTG-G-ATC--CCCGCACCTA--C-----TAAGAACCCGCT-AAAAAGAAGC-AA-AAACTGAGCCGAAAGTAAAAC-----CTT-GAACTGTTTTTTTATAGCC------ACGGT-------GG-TT---T-----AAGCCCTTAGGGTG------AGGCTGTTTTA----TGTCTTG-GTGTG-------TTT-----ATAAACATGTAAGACTTAGATACTTGGTGTTAGTCTTTATTATGCA-AGAATTAAGCAC-AGG----AATGAACTGG-ATTTC------------------TGCG-ACGGCATA-ACA-----TTCGCTAAA----------G-T--GT----GATC-ATTTT-GACGTCAT-------AGCATGC-------TCTCTGGC------AGTG------TCCA-------------GA-TTTCAGAA---AATGAGC-TT-CAG---CCTTTCCACGAACTCA-AAAC---AGTAGACCA----CGG----C--AA-TAG-CCAACTTA-TAAA---CCGAA-A-C-TCTAAA-CCCGGCTCGGGGCTC-AACGGGCAATAAAGCGACGCCG---AGT--GCTA--------TA-AAC--CC-GG-CG-G---C--TC---------G-A------------CCGGCaggtaaatgcaatggccgctggcacactacgatgcactccttcactatcgacttcagacctgaccagagaacaatggctcagaacacgctagaattgcgtggaacactcagaaaaagtgaataacatggtatcagaaagaagacgagaatgcaacaagattcttgagcgaagtaaagaatagacaagagtacaggaggctacattaacagcaactgacgggcccagactgaaggttatttcctagccagaatcctaggtagaccaggctttggaattcttcccggagtcatcaagattaacgggactggaaactgggccactacaaatgctcaggaatcaacctccggcatgacaaaagaattttggcgatcattacacgaacactagatcggaattgatttaacacgcattaatgtgctgagtaagtgagatggaatcatacacagtcctgctgagaagctggatagaactgtacgggaaaaaatctagaaccttagggaaggcactcactcctgattcacgctactaatacggcgtgctaacactctgcggtgaacgacttggtcgcggatgcccagaaaaacgattatcagaccataagaacaggattatcccgcagactagttgacagaatatctgccgattaaccagcagagaaaaacaatcagaagggaccttgcacacagtggcggggaaattagaaactggatcagtggactgagtccggaagaacaagcggagatcgatgaataatgattggacatcccgtacctggccaaacctgctgtgaagagacgagaaaacgtagagagtgtggatccccgcacctactaagaacccgctaaaaagaagcaaaaactgagccgaaagtaaaaccttgaactgtttttttatagccacggtggtttaagcccttagggtgaggctgttttatgtcttggtgtgtttataaacatgtaagacttagatacttggtgttagtctttattatgcaagaattaagcacaggaatgaactggatttctgcgacggcataacattcgctaaagtgtgatcattttgacgtcatagcatgctctctggcagtgtccagatttcagaaaatgagcttcagcctttccacgaactcaaaacagtagaccacggcaatagccaacttataaaccgaaactctaaacccggctcggggctcaacgggcaataaagcgacgccgagtgctataaacccggcggctcgaccggctcacaggccgatgctatataacttcaggccgtgctataagaacgcgccgggtcactcgggcctctaaaacccgcggctggccggtgctacccggcgaaccctgctgggtcaaactgctgacaatcacatgacctctttgcatacaaagttgcactcaggttgaaccacgaggacggcgcgtttagtatact
gi|2 : gagcagagtcggacataataatacagcacatttactcccagatcatgacttacactatatctagagaatctgcgttgaagccggacatttgtaaaaataaacaccatgacaggcctttttgacggggctactttaaaacaaaataatgagtgaccgacacatacatgaagtgggcaagcagctagctttgagagcgacataagattcgataagctagtgc---AAT-AGC----CAA---CTTAT----AAAC-CG-AAACT---CTAAACCCGGCTCGGGGCTC--AA-CGG-GCAATAAAGCGAC--GCCGAGTG-C-TATAAA-CCCGGC----GGCTCGACCGG----CTCA-CAGG-CCG---AT---GCTA--------TATAACTTCA-GGCCGTG---C--TATAAGAACGCG-C------------CGGGTCACTC------GGG----------------C--CTCTAAAACC--C--GCGGC-TGGCCGGTGCTACC---CGGCGAACCC-TGCT-GGGTCAAACTGC----TGA--CAATCA-------CA-----TGACCTC-TTTGCA-TACAAAGTTGCACTCAGGTTGAACCtcacaggccgatgctatataacttcaggccgtgctataagaacgcgccgggtcactcgggcctctaaaacccgcggctggccggtgctacccggcgaaccctgctgggtcaaactgctgacaatcacatgacctctttgcatacaaagttgcactcaggttgaaccacgaggacggcgcgtttagtatact
gi|3 : gagcagagtcggacataataatacagcacatttactcccagatcatgacttacactatatctagagaatctgcgttgaagccggacatttgtaaaaataaacaccatgacaggcctttttgacggggctactttaaaacaaaataatgagtgaccgacacatacatgaagtgggcaagcagctagctttgagagcgacataagattcgataagctagtgcctgggaaaaaactcaattggcaccatgccagcagtatggcaactgagaccagcactgggaagaaaactcaattggcaccatgggatgcgctgccaccttgaaaaaaaagacgcgtcatggccccaaccgaatgcctttgggaaaaaaccagaattggcaccatcgagttaggcaactggaggtcgcggatggtaactcgcgactagaggtaaatgcaatggccgctggcacactacgatgcactccttcactatcgacttcagacctgaccagagaacaatggctcagaacacgctagaattgcgtggaacactcagaaaaagtgaataacatggtatcagaaagaagacgagaatgcaacaagattcttgagcgaagtaaagaatagacaagagtacaggaggctacattaacagcaactgacgggcccagactgaaggttatttcctagccagaatcctaggtagaccaggctttggaattcttcccggagtcatcaagattaacgggactggaaactgggccactacaaatgctcaggaatcaacctccggcatgacaaaagaattttggcgatcattacacgaacactagatcggaattgatttaacacgcattaatgtgctgagtaagtgagatggaatcatacacagtcctgctgagaagctggatagaactgtacgggaaaaaatctagaaccttagggaaggcactcactcctgattcacgctactaatacggcgtgctaacactctgcggtgaacgacttggtcgcggatgcccagaaaaacgattatcagaccataagaacaggattatcccgcagactagttgacagaatatctgccgattaaccagcagagaaaaacaatcagaagggaccttgcacacagtggcggggaaattagaaactggatcagtggactgagtccggaagaacaagcggagatcgatgaataatgattggacatcccgtacctggccaaacctgctgtgaagagacgagaaaacgtagagagtgtggatccccgcacctactaagaacccgctaaaaagaagcaaaaactgagccgaaagtaaaaccttgaactgtttttttatagccacggtggtttaagcccttagggtgaggctgttttatgtcttggtgtgtttataaacatgtaagacttagatacttggtgttagtctttattatgcaagaattaagcacaggaatgaactggatttctgcgacggcataacattcgctaaagtgtgatcattttgacgtcatagcatgctctctggcagtgtccagatttcagaaaatgagcttcagcctttccacgaactcaaaacagtagaccacggcTTCTTGTAACCCGACC----AGTTGTACCGTGGAATACACGTGAGATTTGTGTAAGGCAGCGGATGATCGCTCCAGCGGGAAAGTACA-G-AGCAATTTCGGGCGAATTACTTTGTTCT-TCAGTG-TATAGATAGATTTTTCTGTCT-TAGACACTGGGTA-TACATCTGAGGGAAACTA---T-TTAATGGTACATAATTGATG-TTCGC-CATCGA--AATTTCGCCTCGGACCATATC--AAAAA--TCGTGGCGG--TT-TGATT--ATTCTTAGTATTGCGTCCCATCTTATTTCG-AACTCGTAGTTGGAAG--ATAT--CTTG-CCTGCTGATTTGTTTTTCTAGAGAGAACCCATGTAAC-TGAAAAG---TCGTCTGATGATAACCGTATCCACTAGTATA-GTCT-TAGCCAGT-TAT-ATAGTGTTTAATGAACGGCTACTACAAacgaggacggcgcgtttagtatact
gi|3 : TATGGAGAAATTGTTTGAGTGCATAGCAGGCAGGATGTGGGAAAAACCGTTAC-GTGATGCGTTTTCAGGGGACGAAGAG-CT-CACA--AATTTACCTAGCAGCACA-TACATCACACGAACTATATGAGCTTACACCGTGTTTCTATCAGAAGCAGCAGCCTATC-ACAT-TTAGAAGTGCTGACCAGTTGCTACTCAACTAGCATATAATTAGGTAGTCTATGCACAAGCGTCCCTTTTTATATGTGCTACTTTTAAA-AAAATGGAAATTTATATACCG---CAAA--GTCGGACTGTAAGCAGGCAGCTCTGTCACGGATAACACCCATTGCTCTCGTTAAGTGCATCCGTCCAAATTGGCCACTA--------GACTCG--------GCATACTAGAGGTAGAACTCTCAATTGG-CATCCATGCCTACGCT---TGGC-A--CTGAAGC-CTACA-GATCCCT---CGGAA-AAAA-CTCAATT-GGC--CCAT-------G--GCCAGTC--TG--------GAC--------GA-G-C--CAGT-C-----AC---T-GGG--G--AAAC-C--ACTGTGCACAAT-G---Ttgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaattggccactagactcggcatactagaggtagaactctcaattggcatccatgcctacgcttggcactgaagcctacagatccctcggaaaaaactcaattggcccatggccagtctggacgagccagtcactggggaaaccactgtgcacaatgtcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|3 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagc----TGGCCA--C-TAGACTCGGCATA----CTAGAGGTAG-AACT-CTCAATT-GGCATCCAT-------GC--CTACGC--TT--------GGCA-C----TGAAGCCTACAGATC-----CC---TCGGA-AA--AAACTC--AATTGGC-CCAT-G----GCCAGT------C--TG--------GACG------------AGC---C-----AGTCACTGGGGAAA--CC-A---CTGTGCACAATGTCAAGATGGGCA-G-T----CTACCTCTGGCT------TCTCAAATGAAGC-AGATAAG--AA-GCAA-AATCGA--GCTC-TGG----GCGACTC-TAATCAA-ATCGGGGTCACATCCTGACTATCA-A--CCTGACCTAGAGAGCACATGGGCTGCGTAG-AAACTTCAGC-TAGAAATTCGTGGTAAAGTATGCAGAGCTTAGAGTACACGAAAACACGTGGACGACTACCATTCATTTGTGGTAA-CAGATACAATAGTCTCGAAAAAATGCAAACCACA-GATTGTCTTGAGCGCA---CGTTATAATGTACGCGGGAGGTTACAGGCCAGGTTACTATTTTGTATCACAGCAGACTGATAAGAAAGGCAAGAATTGAGcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|4 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaatGAGTACAAACCGTTAG-AGA-TGTG-GAATCTGCCCGTACCTAAACAAAGTGAAGAA-CCGCCTAAAAAGAAG--AAGAAACTTAGCCGAAAGTAAAAA-----C--GGGACTGTGCTT---T-AGT----GAACTGTTTTTA--TG-CTT-----------------AACTGT-TTTT----------AAAAC-ATTGTGCAT-TGTTCTTGTTTTCCTTAATAAACATGT-AAACTTAAAC-CTT-GTGTTATTCTT-----------------------GGGATTTA-------------TTATGGATTTA--------ATACACA-GGAATACACA-AAATTTCACAGGAT-TTT-----A-T--GCCTTGGATCGA---T--ACA-CATTCC--TAAGTGTGC-TACATTTTTTTGAC-GTCATAATGCTTTTCTCCAAGTACAGCCAAATGA-CGTCACAA---TAG-AGC-TCGCGCT--CCTGTGCTAAAACCTGCACTCTAAACTAGCCCAG---CGG----C--AA-TA---CACTCTA-C-GCCATAC----G-C-TCTGAACCCCGGCC--GGGCCT-ACCGG----C---------------------CTC--------TA-AAC--TC-ACCCGTG---CTATA---------G-C------------CCGGACACCCCTGCAGGGGTCAAA-----------TCGCTT---GACCAATCAGCAT
gi|4 : a----GCTC--------TG-AAC--CCCGGCCG-G-----------------G-C------------CTACCGGCCTCT---------AAA-----------C---TC----ACC--C----GT----GCTATAGC--CCGGAC-----ACCCCTGCAGGGGTCAAATC---GCTTGAC-CAATCAG------CATTG----ACCTCATTTGCA-TAAAAAG-TGCACTCA-GTTG-ACCTCCCTATCGAGGGtgacctcatttgcataaaaagtgcactcagttgacctccctatcgaggg
gi|5 : agagtacaaaccgttagagatgtggaatctgcccgtacctaaacaaagtgaagaaccgcctaaaaagaagaagaaacttagccgaaagtaaaaacgggactgtgctttagtgaactgtttttatgcttaactgtttttaaaacattgtgcattgttcttgttttccttaataaacatgtaaacttaaaccttgtgttattcttgggatttattatggatttaatacacaggaatacacaaaatttcacaggattttatgccttggatcgatacacattcctaagtgtgctacatttttttgacgtcataatgcttttctccaagtacagccaaatgacgtcacaatagagctcgcgctcctgtgctaaaacctgcactctaaactagcccagcggcaatacactctacgccatacAAGAAGA-A-GAAACTGAGCCGAAAGTAGAGATGGTGCTTG-AACTGTTTTT--AT-GCT----GAACTGTTTAAA-------------------------AACTG-----------ATTTAAAAAC-ATTGTGCAT-TG-------TT-CTTTAATAAACATGTAAA-CTTAAAC-CTTG-TGTTAGTCTTTATTATGCACAGGAATA--CAC-AGGATTTAATACAGAGGAAT--------------------ACACA-A-GAATTTTACT-GGATTTCACTGGAT-TTT-----A-T--GC----GATCGA---TAAACA-CATTCC--TAAGTGTGC-TACAG-TTTTTGAC-GTCATAATGC---TCTCCAAG---------------TCCAAAACCGAAT-GAC-TT-CACAATCCTGTGCTAAACCTGC-ACTCTCAACTAGGCCAG---CGG----CTTAACTAGACCGACCTA-TAAA---CCG---GCC-TCTAAA-CCCGGTC---GGCTC-ACCGGCTC-TAGA-C----CCGGCCG----GCTCACCGGTTATA-AAC--CA-GGCCG-GGCTC--TA---------GACACGGCCGGGTAGCCGGCGACCCCTG-TGG---CAAAACTGCGCATGTC--CTT---GACC--CCAGCGTCCTAGATATTG-AA-C---C-----ACCC--ATCGGG
gi|6 : GAA-CTGGGCCTCTACAGATCC-CTGCAG-AAC------GAGC-T----CCG-GCC-AGGAAC-AAAGAA--GA-TTTTGCGGA-TCATTACCACCACCAC-------TAGGA-CGGGGATCG--TTAGAAC-CGCATTAATTGTGCTGAGGTAA-TGAGATGGG-AA-TC-TACCGAGCAGTTCC-TG-CTGAAGAAGCTATTGGCACGTTTCCCA-AGAACTGGGTATCACGTGGGCAAAAATCTA-GTAACagcgtttatac
gi|6 : ATT-ACGCTACTAACATCCTC--CGTGCTA-CACCT-TGCGGTTGTTCGGCCAAA------CAGGACATTTG-GTCGCatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatattacgctactaacatcctccgtgctacaccttgcggttgttcggccaaacaggacatttggtcgc
gi|7 : gaactgggcctctacagatccctgcagaacgagctccggccaggaacaaagaagattttgcggatcattaccaccaccactaggacggggatcgttagaaccgcattaattgtgctgaggtaatgagatgggaatctaccgagcagttcctgctgaagaagctattggcacgtttcccaagaactgggtatcacgtgggcaaaaatctagtaacatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatATGA-CGCG--AGA-GGAAA-TACAGGCAATA-----GAG-GAATGA------TTCACCAGTTCTA-GGA-AGATTA---TG--GATAGACG--AAGTA-TA-GTCTGGCGG-AA-TAAAGTGTTA---GTACAGA---GATGCGTCGCGCATCGATTTA--CAGCT--GGAC-G-ATCTAAAAAA--T--TGGGTGTTTTATGAGTTCAT-----GTATTGCGTCCC--C--AT---GGAAC-----GTAGGAAGGAATATTAC-TGGCC-GCCG-------TTTTTAG-GCGA---CATGT-A--TGAAAAAAGACC-TCTGG-------------TATCAGT-C-TGGTTGTA-CAAGTGCTT-ATA-CGTTAT-TGAACGGC-ACTGCTAA
gi|8 : gcCC-AGGCTTAGGATTTTTTTTCCCGGAGATCCCAGAATCAGAAGATGTAACA-GGGATGGAA-CTGGGTCTTTACAA--CC-CT-CAG-AAT------GAGCCT----CCG-GCC-ATAAAC-AAAGAA--GA-TTTTGC-GA-TCATTTCCACGA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGA-GTAA-TGAGATTGGAAA-TCATACC--ACAG-TCC-T-ACTGAAGAAGC---TGG----------A-AAAACTG------AC-----C-----TCTA-A-AAACCTAGG-AAGGAA-TA-CACCCCAGATT-ACGCTACTAAC-----C--CGTGCTA-CAC-T-TGCGG------AC--AAtgaaagatttggg
gi|9 : gacCC-ATGACCCAAAGAATAGATTTT-GC-TACTCATTTCCACC--CACGTTAGGTTA-GA-C-GGGATAG--TC--AAC-AGAATTAA-TGTGTGGAGA-GA-TGAGATTGGAAA-CCATACA--AGAA-TCC-T-ACTGAAGAAGA---TGA----------A-GGAGCTG------AC---GGCAAAAAT--------CCCAAGG-ACGG-A-----ACT---------CGCCACTAAC-----C--CATGCTA-CAC-C-TGTGG------AG--AAATACTAGTAGGAC-ATTG-GT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CCCCCAAACTTGACCCAAGTTAATATATAACTTATTTGTTACCTGCGTCCGCCCGTTAGGTACTAG
Unaligned ( gi|18 ): GCATCCTAGATATTGAACCGGCCATCAGGACAGTTTATA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111
lowQualScore : 222 2222 2222 1 222 11 1111 111 2 22 33333 1 333333 1 1 1 33333 1 11 1 11 2222222222222 222 222 33 1 22222 111 11111 11 22222 222 333333333 333333333333333333333 111 2222 1 1 444444444 1 1 222 2222 1 2222 77777777777777777 1111 1 1 1 1 1 1 11 1 222 11 11 1 1111 2222222222222 1 1 22 1 11 111 1 333333333 1111 11 11 3333333 1 111111111 111 222222 22222 1 111 2222222222 1 1 11 55555555555555555555555555555555555555555555555555555555555555555555555555555 222 1 3333333333 111111 1 3333333 111 11 6666666666666666666666666666666666666 11 3333333333333 11 1111111 111111111111111111111111111111111111111111111111111111111111111 333333333333333 1 11111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 2222 11 1 1 222 11 1 4444444 333333 2222 55555555555555555 22222 222 1 3333 11 111 22 4444444 11 1 11 2222 2222222222222 11 22222 1 1 11 1 11 1 44444444444 1 11111 222222 1111 11111 2222222222222 1 111 22 1111 3333333333 33333333333 111 1 444444 33333333 111 3333333333333333333 11 22222 3333333 2222 1 1 2222222222222 1 2222 11 333 22 1 1 1 1 1 1 1 222 1 1 222 1 11 1 1 1 2 1 11 66666666666 1 1 11 22222 2 4444444444444444444 33333333333333333333333333333333333333333 1 3333333 1 1111111111111 11 66666666666666666666666 111 11 222222 11 33333333333333333 2222 11 11 11 222222 1 1 222 999999999999999999999999999999999999 3333333333 1 1111 44444444444444444444444444444444444444 111 77777777777777777777777777777777777 11 7777777777777777777777777777777777 66666666666666666666 22222 33333333 111 1 33333 33 999999999999999 1 2 11 2
lowQualScore : 111 3333 3333 22 5 111 77 8888 6 777 3 55 33333 3 888888 88 3 3 3 33333 3 88 3 22 5555555555555 333 333 11 3 7 66666 999 88888 88 77777 888 333 333333333 777777777777777777777 1 333 7777 3 3 555555555 2 3 333 4444 7 3 2222 55555555555555555 7777 1 7 3 3 3 3 3 7 3 1 88 1 5 222 1 88 1 66 5 5555 8888888888888 7 3 3 00 0 22 777 0 1 666666666 4444 33 88 2222222 0 3 888888888 55 777 0 22 3 444444 55 44444 0 444 4444444444 2 2 00 99999999999999999999999999999999999999999999999999999999999999999999999999999 7 333 1 3 3333333333 888888 0 4 7777777 444 8 8 8 88 7777777777777777777777777777777777777 8 5 11 1111111111111 8 11 4444444 8 0 0 333333333333333333333333333333333333333333333333333333333333333 7777 0 777777777777777 0 88888 0 1 6 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 7777 44 2 6 3 333 88 7 3 7 5555555 444444 8888 44444444444444444 22222 333 3 0000 7 88 777 00 5555555 7 44 6 3 44 1111 9999999999999 44 22222 1 3 3 88 0 1 1 33 0 66666666666 2 3 0 8 22222 8 8 333333 7777 8 6 1 6 88888 7 6 6 7 6666666666666 6 6 6 99 99 6 6 3 6 3 3 6 111 0 8 8 55 0 4444 5555555555 8 3 33333333333 0 444 0 888888 2 3 8 88888888 8 000 1111111111111111111 0 11 8 6 7 6 33333 0 1111111 6 8888 3 3 3 6 7777777777777 3 3 6 8888 88 777 7 00 7 3 5 5 5 5 1 1 5 5 111 1 5 5 1 111 5 88 5 5 1 7 7 3 6 3 7 88 00000000000 3 3 99 55 2 3 00000 0 3 2222222222222222222 00000000000000000000000000000000000000000 3 3 5 1 2 2222222 3 3 3 3 0 55 0 9999999999999 8 8 11 6 22222222222222222222222 444 6 66 1 6 333333 99 55555555555555555 0 2222 8 11 11 8 99 888888 0 0 3 777 3 777777777777777777777777777777777777 2222222222 1 0 0 5555 22 5 1 66666666666666666666666666666666666666 444 999 8 8 8 00000000000000000000000000000000000 8 11 2222222222222222222222222222222222 66 5 88888888888888888888 55555 6 6 66666666 777 5 00000 55 333333333333333 5 0 3 88 0 1
lowQualScore : ... .... .... .. . ... .. .... . ... . .. ..... . ...... .. . . . ..... . .. . .. ............. ... ... .. . . ..... ... ..... .. ..... ... ... ......... ..................... . ... .... . . ......... . . ... .... . . .... ................. .... . . . . . . . . . . .. . . ... . .. . .. . .... ............. . . . .. . .. ... . . ......... .... .. .. ....... . . ......... .. ... . .. . ...... .. ..... . ... .......... . . .. ............................................................................. . ... . . .......... ...... . . ....... ... . . . .. ..................................... . . .. ............. . .. ....... . . . ............................................................... .... . ............... . ..... . . . ............................................................................................................... . .... .. . . . ... .. . . . ....... ...... .... ................. ..... ... . .... . .. ... .. ....... . .. . . .. .... ............. .. ..... . . . .. . . . .. . ........... . . . . ..... . . ...... .... . . . . ..... . . . . ............. . . . .. .. . . . . . . . ... . . . .. . .... .......... . . ........... . ... . ...... . . . ........ . ... ................... . .. . . . . ..... . ....... . .... . . . . ............. . . . .... .. ... . .. . . . . . . . . . . ... . . . . ... . .. . . . . . . . . . .. ........... . . .. .. . . ..... . . ................... ......................................... . . . . . ....... . . . . . .. . ............. . . .. . ....................... ... . .. . . ...... .. ................. . .... . .. .. . .. ...... . . . ... . .................................... .......... . . . .... .. . . ...................................... ... ... . . . ................................... . .. .................................. .. . .................... ..... . . ........ ... . ..... .. ............... . . . .. . .
lowQualScore : 000 0000 0000 00 5 000 55 0000 7 777 3 33 33333 3 333333 33 3 3 3 33333 3 33 3 77 7777777777777 333 333 77 3 3 77777 000 77777 33 77777 777 333 777777777 000000000000000000000 0 000 0000 3 3 333333333 0 3 333 3333 3 3 7777 33333333333333333 3333 0 3 3 3 3 3 3 3 3 0 55 0 5 000 0 55 0 55 0 7777 3333333333333 3 3 3 77 0 55 555 0 2 555555555 2222 88 00 5555555 8 2 555555555 00 555 2 88 0 222222 88 00000 0 555 3333333333 0 0 33 77777777777777777777777777777777777777777777777777777777777777777777777777777 3 333 0 3 9999999999 888888 0 2 2222222 000 0 0 0 66 2222222222222222222222222222222222222 0 0 00 8888888888888 0 00 2222222 0 8 8 111111111111111111111111111111111111111111111111111111111111111 2222 2 555555555555555 0 22222 2 0 7 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 7777 77 0 7 3 333 33 3 3 3 7777777 333333 3333 77777777777777777 00000 333 3 7777 3 33 777 77 7777777 3 00 7 3 77 7777 0000000000000 00 33333 0 3 3 33 0 2 0 22 0 00000000000 5 2 0 0 22222 0 0 000000 0000 0 7 5 7 00000 2 7 7 8 7777777777777 7 7 7 22 22 7 7 7 7 2 3 7 777 8 0 0 44 8 8888 0000000000 0 2 00000000000 8 222 0 000000 5 5 0 44444444 0 000 3333333333333333333 8 66 0 7 3 7 33333 7 7777777 7 3333 7 3 3 7 7777777777777 3 7 7 3333 33 777 3 77 3 3 5 0 0 0 0 0 0 0 000 0 0 0 0 000 0 00 0 5 0 3 3 3 7 3 3 33 77777777777 3 3 22 88 5 2 00000 8 2 8888888888888888888 00000000000000000000000000000000000000000 5 2 5 0 5 5555555 2 2 2 2 0 00 8 8888888888888 0 0 66 2 22222222222222222222222 888 5 55 0 0 000000 00 88888888888888888 8 4444 0 00 00 0 00 888888 0 0 2 555 2 888888888888888888888888888888888888 5555555555 0 8 8 5555 00 6 8 88888888888888888888888888888888888888 000 222 0 2 0 22222222222222222222222222222222222 0 00 0000000000000000000000000000000000 00 6 22222222222222222222 88888 7 7 77777777 333 0 55555 00 000000000000000 5 0 0 00 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACCGCACAGTCGTACCGTGGANNACACGTGAGACTTGTGTAAGGCAGCGGATGA-CGCGCCAGCGG-A-AA-TACAGG-AGTA-----GAG-GAATTA------TCNACCAGTG-TA-AGA-AGATT-----ATGT-TAGACG--AGGTA-TACGTCTGGGGGAA--TAAAGT-TTA---GTACAGA---GATGC-TCGC-CATCGATTAA---C-GC--CGGA-CCG-ATC--AAAAA--T--TGGCGGTTT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTNGGAAGGAATAT--C-TG-CC-GCCG-------TTTCTAG-GCGA---CATGT-AC-TGAAAAAAG-CC-T--CTGA-------------CACCAGTACA-GTTTTA-CCAGT-TTT-ATA-CG-TTATTGAACGGC-ACTNCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGAAATTGTTTNGGTGCATAGCAGGCNGGATGTGGGAAAAACCGNTANAGTGATGCGTTTCCGGGGGACGAAGAG-CT-GACA-TAA--TACATA-CAGCACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAATA--CCATGCACA---GCCCCTTTTTACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACACAAA--CATGAA--GTGGGCAGGCAGCCCTA----G----------------CTCGTTAAG-GCG-------AAATTGGCCACCATG--AG---ACTCG---AGCC-GCGCACT---GGGAAAAANCTCAATTGG-CATCATTGC--A-GC----TGGC-A--C-GAGGC-CGGCA-A----CT---GGGAA-AAAA-CTCAATT-GGCA-CCAT------CGCTGCCANGCTG-A------GGCA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACCC--AATTG-GCACCAT-GNGCCAGTG--C-GCTG------------AGAAGACGCGTN-TGGC---AGC---CGANT-AGNCACTGGGGAAA---AA---CC-A---CTG-GCACNATG-CGAGNTGGGCA-C-TG-AGCTAGC-CTGGATGG-AACTCT---ACGA-GC-ATANAAG--AA-GCAA-AGCCG--GCT------C--G--GC-ACTC-T--TCACTATCG---TCACATC--GACT-TCA-A--CCTGACCTAGAGAGCACAT-GGCT---CAGAAAA--CAGC-TAGAAATTCGTGGAACA------AGAGCTCAGA----A-GAAA----GTGAACGA-TAACA--------TGG-T-A-CAGA---AA-AAGACT---GAAAATGCAA--CA-A-GATT-TCTTGAGCGAA---A---AGAATAGACG-GGGA-GTTACAG-G--AGGCTACTACATTG----ACAGCAGACTGA-AAGAAAGGCCAAGACTGAGGGTTNTTACCTAG-CCA-GAATCCTA--CAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGCAACG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GATTTTTGC-GA-TCATTTCCACNA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TGACTGAAGAAGC---TGG----------A-AGAACTG------AC--GGGCAAAAATCTA-G-AACCCTAGG-AAGG-A-T--CACTCCAGATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AA-GCAACGTTTATCCGC----AGACCAGTA----AANA-AAGAT-TATCCCGCAG-ACCCCAGT--A-AGAA-ATCCGGC----CGATAAACC--AGCAGAA-CGAAACACAAACA-AAGGGATCCT-TGCTACACAGTGGCGGGNAAATTAGGNACTGGATCAGTGGACTGAGTCCGNAAGGAACAAGCGGAGATCGATGGAANGATGATTGGGCATCCCGCTACCTGGCCCAAAACCCGCTGTGAAGAGANGAGTACAAACCGTTAG-AGA-TGTG-GAATC--CCCGCACCTAA------C-GAAGAACC-GCC-AAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTG-AACTGTTTTTTTAT-GCT----G------AACTGTTTAAA--TTTT---AAGC--TTGAACTGT-TTTTA-G-CTGTTTAAAAACTGTTNTGCATTG-------TTTCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATGCACAGGAATA-CGC-AGGATTTAATACACNGGAATTTNAC-GGATTTA--------ATACA-A-GGAATACACA-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-T-AACACGTTC-C--TA--AGTGTGC-TACA--TTTT------TGA-C-GTCATAATGCC--TCTCCAAGTGC--------GA-NTTCAAAAC-G-----------AATAGC-TT-CAC---CCTGTGCTAAAACTCG-ACTCTAAACTAGGCCAG---CGG----C--AA-TAG-CCGACCTA---CGAC-TCCG---G-C-TCTAAA-CCCGGCCGGGCTC-ACCGG---CT---AGACCCG---G----GCTC--------TA-AAC--CCGGCCGTG---C--TA---------G-C------------CCGGCGACCCCTGCTGGGGTCAAA-----------C--CTC---GACC--CCAGCGTCCTAGCTATTGCAA-CC-----GCCC-GTCGGGGCCAGACCGCCGCTTGACTCAATCAGAAGCCGCATTGCTTGACCTCATTTGCAGTANAAAGTTGCACTCAGGTTGAACCTCCCTATGGAGGG
Reference ( family-3 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACCGCACAGTCGTACCGTGGANNACACGTGAGACTTGTGTAAGGCAGCGGATGA-CGCGCCAGCGG-A-AAGTACAGG-AGTA-----GAG-GAATTA------TCNACCAGTG-TA-AGA-AGATT-----ATGT-TAGACG--AGGTA-TACGTCTGGGGGAA--TAAAGT-TTA---GTACAGA---GATG--TCGC-CATCGATTAA---C-GC--CGGA-CCG-ATC--AAAAA--T--TGGCGGTTT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTNGGAAGGAATAT--C-TG-CC-GCCG-------TTTCTAG-GCGA---CATGT-AC-TGAAAAAAG-CC-T--CTGA-------------CACCAGTACACGNTTTA-CCAGT-TTT-ATA-CG-TTATTGAACGGC-ACTNCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGAAATTGTTTNGGTGCATAGCAGGCNGGATGTGGGAAAAACCGNTANAGTGATGCGTTTCCGGGGGACGAAGAG-CT-GACA-TAA--TACATA-CAGCACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAATA--CCATGCACA---GCCCCTTTTTACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACACAAA--CATGAA--GTGGGCAGGCAGCCCTA----G----------------CTCGTTAAG-GCG-------AAATTGGCCACCATG--AG---ACTCG---AGCC-GCGCACT---GGGAAAAANCTCAATTGG-CATCATTGC--A-GC----TGGC-A--C-GAGGC-CGGCA-A----CT---GGGAA-AAAA-CTCAATT-GGCA-CCAT------CGCTGCCANGCTG--------GGCA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACTC--AATTG-GCACCAT-GTGCCAGTG--C-ACTG------------AGAAGACGCGTN-TGGC---AGC---CGANT-AGNCACTGGGGAAA---AA---CC-A---TTG-GCACCGTG-CGAGNTGGGCA-C-TG-AGCTAGC-CTGGATGG-AACTCT---ACGA-GC-ATANAAG--AA-GCAA-AGCCGCTGCC------C--G--GC-ACTC-T--TCACTATCG---TCACATC--GACT-TCA-A--CCTGACCTAGAGAGCACAT-GGCT---CAGAAAA--CAGC-TAGAAATTCGTGGAACA------AGAGCTCAGA----AGGAAA----GTGAACGA-TAACA--------TGG-T-A-CAGA---AA-AAGACT---GAAAATGCAA--CA-A-GATT-TCTTGAGCGAA---A---AGAATAGACG-GGGA-GTTACAG-G--AGGCTACTACATTG----ACAGCAGACTGA-AAGAAAGGCCAAGACTGAGGGTTNTTACCTAG-CCA-GAATCCTA--CAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGCAACG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GATTTTTGC-GA-TCATTTCCACNA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TGACTGAAGAAGC---TGG----------A-AGAACTG------AC--GGGCAAAAATCTA-G-AACCCTAGG-AAGG-A-T--CACTCCAGATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AA-GCAACGTTTATCCGC----AGACCAGTA----AAGA-AAGAT-TATCCCGCAG-ACCCCAGT--A-AGAA-ATCCGGC----CGATAAACC--AGCAGAA-CGAAACACAAACA-AAGGGATCCT-TGCTACACAGTGGCGGGNAAATTAGGNACTGGATCAGTGGACTGAGTCCGNAAGGAACAAGCGGAGATCGATGGAANGATGATTGGGCATCCCGCTACCTGGCCCAAAACCCGCTGTGAAGAGANGAGTACAAACCGTTAG-AGA-TGTG-GAATC--CCCGCACCTAA------C-GAAGAACC-GCC-AAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTGGAACTGTTTTTTTAT-GCT----G------AACTGTTTAAATGTTTT---AAGC--TTGAACTGT-TTTTA-G-CTGTTTAAAAACTGTTNTGCATTG-------TTTCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATGCACAGGAATA-CAC-AGGATTTAATACACTGGAATTTCAC-GGATTTA--------ATACA-A-GGAATACACA-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-T-AACACATTC-C--TA--AGTGTGC-TACA--TTTT------TGA-C-GTCATAATGC---TCTCCAAGTGC--------GA-TTTCAGAA--------------AATAGC-TT-CAC---CCTNTNCTAAAACTCG-ANNCTAAACTAGACCAG---CGG----C--AA-TAG-CCGACCTA---CAAC-TCCG---G-C-TCTAAA-CCCGGCCGGGCTC-ACCGG---CT---AAACCCG---G----GCTC--------TA-AAC--CCGGCCG-G---C--TA---------G-C------------CCGGCGACCCCTGCTGGGGTCAAA-----------C--CTC---GACC--CCAGCGTCCTAGCTATTGCAACCC-----ACCCTGCCGGGGTCAAACCG-CGCTTGAC-CAATCA------GCATTG--TGACCTCATTTGCA-TAAAAAGTTGCACTCA-GTTGAACCTCCCTATNGAGGG
gi|1 : TTCTTGT---CTGACCGCACAGTCAT----TGGATAACACG-GAGACTT-T-TAAG--AGCAGA----CGCGCCAACGG-ATAA--ACAGA-AGTA-----GAG-GAATTA------TCAACCAGTG-TA-AGA-AGATT-----ATGT-TAGACG--AGATGCTATATCTGGG-------AAAAT-TTA---GTACAGA---GATG--TCGC-CATCGATTAA---C-GC--TGGAGCCG-ATC--AAAAAATT--TGGTG--TT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTGGGAAAGA-TAT--T-TG-CC-GC-G-------TTT--AG-GCGA---CATGT-ACCTGAAAAAAA-CC-TTTCTAA-------------CA--AGTACACGATT-A-CCAGT-TTTTATA-CG-T-ATTGAACGGC-ACTTCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGA--TTGTTTTGG-GC-T-GCAGGCTGGATGTGGGAAA--CCGGTAAAGTAATGCGTTTCCGGGAGA-GAAGAG-CTCGACAATAA--TACA------CACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGTATT-GAA--GCCGGACATTTTGTA-------AAAAAATAA--AAATA--CCAT-CACA---GCCCCTTTTTA-G-GGCCTACTTTAAA-CAAAAT---A-TGAGTG-ACACACACAAAAACAT-AA--GTG--CA--CTGCCCTA----G----------------TTCGTTAAG-GC---------AATTGGCCACCATGCCAGCTGACCTG---AGCC--CGCACT---GGGAAAAACCCTAATTGGGCATCATTGC--A-GC----TGGC-A--C-GAGGC-CAGCA------CT---GGAAA-AAAAGCTCAATTTGGC--CCAC------CACTGCCAAGCTG--------CGCA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACC----ATTG-GCACT----TGCCAGTAGAC-ACTG------------AGAA--CCATTT-TGGC----GC---TGAGTCAGGCACTGGGGAAA---AA---CCCA---TTG-GCACTGTG-CCAGCTGG-CA-CCTG-AGCCAGCACTGGAGAA-AATTTT---ACGG-GCTATAAAA---AG-GCAG-AGCC----CT------C--G---C-ACTC-T---CACT--CT---TCACATC--GACT-TCA-GACCCTGACCT-GAGA--ACAT-GGCT---CAGAAAA--CAGCCTAGAAATTCGTGGA-CA------AGAGCTCAGA----AGGAAA----GTGAATAA--AACA--------TGGCT-A-CAGA---AA-AAGACT---GGAA-TGCAA--CA-AAGATT-TCTTGAGCGAA---A---AGA-TAGACA-GGGA-GCT-CAGCG--AGGCT--TACATGG----ACAGCAG-CTGA-AA-AAAGGCCAAGACTGAGAGTTTTTACCTACTCCACGAATCCTA--CAGACC-AGGCTTGGGATTTTTTT-CCCGGAG-TC---G---CAAAAGATGCA-CGCGGACTGGAA-CTGG-CCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GATTT--GC-GA-TCATTACCACCA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGATAA-TGAGATTGG-AA-TCATACC--AC-G-TCCTTGCCTGAAGAAGC----GG----------A-A-AACTG------AC--GGGCAAAAATCTAGG-AACCCTAGG-AAGG-A-TTACACTCCAGATT-ACGCTA-TAAC-----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AAGGCAGCATTTATCCGC----AGACCAGTA----AAGA-AAGATGTAT-CCGCAG-A--CCAGT--A-AGAA-ATCGGGC----CGATAAACC--AGCAGAAGTAAAACACAAACA-AAGGGATCCTGTGCTACA-AGT-GC-GGTAAATTAGGCACT-GATCAGT-GACTG---TCGCAAGGAACAAGCGGAGATCGATGGAAGGATGATTGGG---CCCGCTACCTGGCTCAAAACCCG-TGTG-AGAGAAGAGTACAAACCGTTAGCAGATTGTGAGAATC--CCCGCACC--A------CTGAAGAACC-GCC-TAAAAGAAGAGAAGAAA-TGAGCCG-AAGTAAAAA-----CTTGAAACTGTTTTTTTAT-GCT----GTTTTAAAACTGTTTTCAT-TGTTAAAAAAC--TTGAACTGTATTTTATG-CTGTTTAAAAACTGTTTTACATTG-------TTTCTTTAATAAACATGTAAAACTAAAAC-CTTGGTGTTAGTCTTTA-TATGCAGAGGAATACCACAAGGATTTTATACACTGGAATTTCAC-AGATTTATGCGATCGATACA-G-GGAATACACAGGGAATACAC-G------GATA-TTT-----ATT--G-C----GATCGA----------TT-C--TA--AGTGTGC-TACA--TTTT------TGA-CAGTCATAATGC---CTCCCAAGTGC--------GATTTTCAGAA--------------AATAGCTTT-CAC---CCTTTTCCACAACTCA-AAGCGAAAGTAGACCA----CGG----C--AA-TAG-CCAACCTA---TAGC-TCCG---G-CATCTAAA-CCCGGCCATGCTT-A--------T---TAACCCG---G----ACTC--------TA-AAC--CCGGCCG-G---C--TA---------G-C------------CCGGCGACCCCTGCTGGGGTCAAA--------------CTT---GACC--C---CGTCCTAGCTATTGCAA-CC-----GCCCAATCGAGGCCAGACCACCGCTTGACTCAATCAGAAGCCGCATTGCTTGACCTCATTTGCAGTAAAAAGT--CACTCA-GTTGAACCTCCCTATGGAGGG
gi|10 : taatgaaaggcttcgaacacctgtatttataggtgaaaaaaaggtaatgcattcaaccgtgtctgtgcatcacgtgatcaacccccttgtgcgttagtgtgcgttagcattcaTTACCTAG-CCA-GAATATGT--CAAACCCAGCCTTAGGAGTTTTTT-CCCGGAG-TC---A---CA--ATATGCAACG-GAACTGGAA-CTAGGCCTCTACAA--CA-CG-AAG-AATGCATCGGAACCTGAGGCCGCGCCAATGAGC-AAAGAA--GA-TTTTGC-GA-TCATTTCCACG------------TA-GA-C-GGGATCA--TG--AAC-AGAATTAA-TGTGCTG-GGTGA-TGAAATTGG-AACTCATACC--Agggctata
gi|11 : G--AAA------CAGGAAAATCATGTCTTCGGATTGCTCCCCAGACAC-GCGAGATTAATTCGCCATAAGACCAGTAACACAATA-GAGAT-TATCACGCAATACCCCGTT--A-AGAA-ATTCGGCATCGCAGTAATTCGAAACTGAATCGAAAC-TAAAC--AAGGACTCCT-g
gi|12 : GATTTTACTG------AAT--TTTTTACAA-TTAG-C----GATCGAAT-AACACATTT-CCGTA--AGTGTGCTTACA--
gi|13 : gagatatacacttactgcga-ACTCTAAACTAGGCTAA-----------------AG-C-GCTCTA---CA---CCCG---G-T-TATAAA-CCCGACCGGGCTC-ACCGGGCTTT---AAACCTG---GCCGTGCTA--------TA-AAC--CCGGCTG-GA--C--TA---------G-C------------CCGGCGACCCCTGCTGGGGTCAaactatatttcattacttaattgaaacgattttccatacatgctctacaaaccaaaaacc
gi|14 : cctgcGA-CTTACACC-TGTATAT---AGAAG-AAC-------CTGCGT-TT-GAA--GCCGGACATTTT-TA-------AATAAA-AA--AAAAA--CCATGCACA---GCC--------------CTACTTTAAAACAAAAT----ATGAGTG-AC--ACAC
gi|16 : -----CTTG-AACTGTTTTC--AT-GCTTATTG------AACTGTTTAAA
gi|17 : gggactgtgTTTATTATGCACAGGAATA-CAC-AGGATTTAAAACACTGGacattgtgc
gi|2 : AGAGTCG-GACA-TAA--TA-ATA-CAGCACATTTACTCCCA-GATC-AT--GA-CTTACAC--TATATCT---AGAGA-ATC-------T-GCGT-T--GAA--GCCGGACATTT-GTA-------AA--AATAA--A--CA--CCATG-ACA---GGCCTTTTTGACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACACATA--CATGAA--GTGGGCAAGCAG--CTA----G----------------CT--TTGAGAGCG-------A----------CATA--AG---ATTCGATAAGCTAGTGC-CT---GGGAAAAAACTCAATTGG-CACCATGCC--A-GCAGTATGGC-AACT-GAGAC-CAGC--A----CT---GGGAAGAAAA-CTCAATT-GGCA-CCATGGGATGCGCTGCCACCTTGAAAAAAAAGACG-CGTCATGG-CCC--CAA--CCGAATGCCTTT-GGGAA--AAAACCAGAATTG-GCACCATCGAGTTAG-G--CAACTG-------------GAGGTCGCGGA-TGGT---AACTCGCGACT-AGA-----GGTAAATGCAATGGCC-G---CTG-GCACACTA-CGA
gi|2 : gagc----CT---GGGAA-AAAA-CTCAATT-GGCA-CCAT----------GCCA-GCAGTAT-----GGCAAC----TGA-GAC--CAG--C-----AC---T-GGGAAGAAAACTC--AATTG-GCACCAT-GGG---ATG--C-GCTGCCACCTTGAAAAAAAAGACGCGTCATGGCCCCAAC---CGAAT--GCCTTTGGGAAAA---AA---CC-AGAATTG-GCACCAT--CGAGTTAGGCAAC-TGGAGGTCGC---GGATGGTAACTC----GCGA--C--TAGAGGTAAATGCAATGGCCGCTGGCACACTAC--GATGC-ACTCCT--TCACTATCG-------------ACT-TCAGA--CCTGACC-AGAGAACA-AT-GGCT---CAGAACA--C-GC-TAGAATTGCGTGGAACA----------CTCAGA----A--AAA----GTGAA----TAACA--------TGG-T-ATCAGA---AAGAAGAC----GAGAATGCAA--CA-A-GATT--CTTGAGCGAAGTAA---AGAATAGACA-AG-A-GT-ACAG-G--AGGCTAC---ATTA----ACAGCA-ACTGA-CGG----GCCCAGACTGAAGGTTATTTCCTAG-CCA-GAATCCTAGGTAGACC-AGGCTTTGGAATTCTT--CCCGGAG-TC---AT--CA--AGAT-TAACG-GGACTGGAAACTGGGCCACTACAA--ATGCT-CAGGAAT------CAACCT----CCG-GC--ATGACA-AAAGAA----TTTTGGC-GA-TCATT-ACACGAACAC-------TA-GATC-GGAATTGATTT--AACACGCATTAA-TGTGCTGAG-TAAGTGAGAT-GG-AA-TCATAC---ACAG-TCC-TG-CTGA-GAAGC---TGG----------ATAGAACTGT-----AC--GGGAAAAAATCTA-G-AACCTTAGGGAAGGCACT--CACTCCTGATTCACGCTACTAATA----CGGCGTGCTAACAC-TCTGCGG------TG--AA-------C--GAC--TTG-GTCGC-GGAT-GCCC---AGA-AA---AACGATTATC-------AGACCA-TA----AGAACAGGAT-TATCCCGCAG-ACT--AGTTGACAGAATATCTG-C----CGATTAACC--AGCAGA---GAAAAACAATCAGAAGGGA-CCT-TGC-ACACAGTGGCGGGGAAATTAGAAACTGGATCAGTGGACTGAGTCCGGAAG-AACAAGCGGAGATCGATG-AATAATGATTGGACATCCCG-TACCTGGCC--AAACCTGCTGTGAAGAGACGAG---AAAACGT-AG-AGAGTGTG-GA-TC--CCCGCACCTA-------C-TAAGAACCCGCT-AAAAAGAAGC-AA-AAACTGAGCCGAAAGTAAAAC-----CTTG-AACTGTTTTTTTATAGCC------------ACGGT------GGTTT---AAGCCCTTAGGGTG------A-GGCTGTTTTA----TGTCTTG----G-------TGTGTTTA-TAAACATGTAAGACTTAGATACTTGGTGTTAGTCTTTAT------------TA-TGC-AAGAATTAA-GCACAGGAA-TGAACTGGATTTC---------TGCG-ACGGCATA-ACA-----TTCGCTAAAGTGTGATCATTT-------T--GAC----G-TC-A-T-AGCATGCTCTC--TGGCAGTGT-C-CAGA--TTTCAGAAAATGAGC-TTCA----GCC--TTTCCA----C--------GA-ACTCAAAACAGTAGACCACGGCAATAGC----CAA---CTTAT----AAAC-CG-AAACT---CTAAACCCGGCTCGGGGCTC--AA-CGG-GCAA--TAAAGCGAC-GCCGAGTG-C-TATAAA-CCCGGC--GGCTCGACCGG---CTCACAGGCCGA---T----GCTA--------TATAACTTCAGGCCGTG---C--TATAAGAACGCG-C------------CGGGTCACTC------GGG----------------C--CTCTAAAACC--C--GCGGC-TGGCCGGTGCTACCCGGCGAACCCTGCTGGG-TCAAACTG-C---TGAC--AATCA-------CAT-----GACCTC-TTTGCA-TACAAAGTTGCACTCAGGTTGAACCtgcactccttcactatcgacttcagacctgaccagagaacaatggctcagaacacgctagaattgcgtggaacactcagaaaaagtgaataacatggtatcagaaagaagacgagaatgcaacaagattcttgagcgaagtaaagaatagacaagagtacaggaggctacattaacagcaactgacgggcccagactgaaggttatttcctagccagaatcctaggtagaccaggctttggaattcttcccggagtcatcaagattaacgggactggaaactgggccactacaaatgctcaggaatcaacctccggcatgacaaaagaattttggcgatcattacacgaacactagatcggaattgatttaacacgcattaatgtgctgagtaagtgagatggaatcatacacagtcctgctgagaagctggatagaactgtacgggaaaaaatctagaaccttagggaaggcactcactcctgattcacgctactaatacggcgtgctaacactctgcggtgaacgacttggtcgcggatgcccagaaaaacgattatcagaccataagaacaggattatcccgcagactagttgacagaatatctgccgattaaccagcagagaaaaacaatcagaagggaccttgcacacagtggcggggaaattagaaactggatcagtggactgagtccggaagaacaagcggagatcgatgaataatgattggacatcccgtacctggccaaacctgctgtgaagagacgagaaaacgtagagagtgtggatccccgcacctactaagaacccgctaaaaagaagcaaaaactgagccgaaagtaaaaccttgaactgtttttttatagccacggtggtttaagcccttagggtgaggctgttttatgtcttggtgtgtttataaacatgtaagacttagatacttggtgttagtctttattatgcaagaattaagcacaggaatgaactggatttctgcgacggcataacattcgctaaagtgtgatcattttgacgtcatagcatgctctctggcagtgtccagatttcagaaaatgagcttcagcctttccacgaactcaaaacagtagaccacggcaatagccaacttataaaccgaaactctaaacccggctcggggctcaacgggcaataaagcgacgccgagtgctataaacccggcggctcgaccggctcacaggccgatgctatataacttcaggccgtgctataagaacgcgccgggtcactcgggcctctaaaacccgcggctggccggtgctacccggcgaaccctgctgggtcaaactgctgacaatcacatgacctctttgcatacaaagttgcactcaggttgaaccacgaggacggcgcgtttagtatact
gi|3 : gagcagagtcggacataataatacagcacatttactcccagatcatgacttacactatatctagagaatctgcgttgaagccggacatttgtaaaaataaacaccatgacaggcctttttgacggggctactttaaaacaaaataatgagtgaccgacacatacatgaagtgggcaagcagctagctttgagagcgacataagattcgataagctagtgcTTCTTGTAACCCGACC----AGTTGTACCGTGGAATACACGTGAGATTTGTGTAAGGCAGCGGATGATCGCTCCAGCGGGA-AAGTACAG--AGCAATTTCGGGCGAATTACTTTGTTCT-TCAGTG-TATAGATAGATTTTTCTGTCT-TAGACACTGGGTA-TACATCTGAGGGAAACTA---T-TTAATGGTACATAATTGATGT-TCGC-CATCGA--AATTTC-GCCTCGGA-CCATATC--AAAAA--TCGTGGCGGTTT---GATT--ATTCTTAGTATTGCGTCCCATCTTATTTCG-AACTCGTAGTTGGAAG--ATAT--CTTG-CCTGCTGATTTGTTTTTCTAGAGAGAACCCATGTAAC-TG--AAAAG-TCGT--CTGATGATAACCGTATCCACTAGTATA-GTCTTAGCCAGT-TAT-ATAGTGTTTAATGAACGGCTACTACAAacgaggacggcgcgtttagtatact
gi|3 : TATGGAGAAATTGTTTGAGTGCATAGCAGGCAGGATGTGGGAAAAACCGTTAC-GTGATGCGTTTTCAGGGGACGAAGAG-CT-CACA--AATTTACCTAGCAGCACA-TACATCACACGAACTATATGAGCTTACACCGTGTTTCTATCAGAAGCAGCAGCCTATC-ACAT-TTAGAAGTGCTGACCAGTTGCTACTCAACTAGCATATAATTAGGTAGTCTATGCACAAGCGTCCCTTTTTATATGTGCTACTTTTAAA-AAAATGGAAATTTATATACCG---CAAA--GTCGGACTGTAAGCAGGCAGCTCTGTCACGGATAACACCCATTGCTCTCGTTAAGTGCATCCGTCCAAATTGGCCACT-----AG---ACTCG--------GCATACTAGAGGTAGAACTCTCAATTGG-CATCCATGCCTACGCT---TGGC-A--CTGAAGC-CTACA-GATCCCT---CGGAA-AAAA-CTCAATT-GGC--CCAT-------G--GCCAGTCTG--------GAC--------GA-G-C--CAGT-C-----AC---T-GGGGA--AA---C--CACTGTGCACAAT-GTtgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaattggccactagactcggcatactagaggtagaactctcaattggcatccatgcctacgcttggcactgaagcctacagatccctcggaaaaaactcaattggcccatggccagtctggacgagccagtcactggggaaaccactgtgcacaatgtcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|3 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagc----TGGCCA--C-TAGACTCGGCATA----CTAGAGGTAG-AACT-CTCAATT-GGCATCCAT-------GC--CTACGCTT--------GGCA-C----TGAAGCCTACAGATC-----CC---TCGGAAA--AAACTC--AATTG-GC-CCAT-G-GCCAGT------CTG----------------GACG------------AGC---C-----AGTCACTGGGGAAA--------CC-A---CTGTGCACAATGTCAAGATGGGCA-G-T----CTACCTCTGGCT------TCTCAAATGAAGC-AGATAAG--AA-GCAA-AATCGA-GCT------CTGG--GCGACTC-TAATCAA-ATCGGGGTCACATCCTGACTATCA-A--CCTGACCTAGAGAGCACATGGGCTGCGTAGAAACTTCAGC-TAGAAATTCGTGGTAAAGTATGCAGAGCTTAGAGTACACGAAAACACGTGGACGACTACCATTCATTTGTGG-TAA-CAGATACAA-TAGTCTCGAAAAAATGCAAACCACA-GATTGTCTTGAGCGCA---CGTTATAATGTACGCGGGAGGTTACAG-GCCAGGTTACTATTTTGTATCACAGCAGACTGATAAGAAAGGCAAGAATTGAGcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|4 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaatGAGTACAAACCGTTAG-AGA-TGTG-GAATCTGCCCGTACCTAAACAAAGT-GAAGAACC-GCCTAAAAAGAAG--AAGAAACTTAGCCGAAAGTAAAAA-----C--GGGACTGTGCTT---T-AGT----G------AACTGT-------TTTT---ATGC--TT-AACTGT-TTTT-----------AAAAC-ATTGTGCATTGTTCTTGTTTTCCTTAATAAACATGT-AAACTTAAAC-CTT-GTGTTATTCTT----------------------GGGATTTA-------------TTAT-GGATTTA--------ATACACA-GGAATACACA-AAATTTCACAG------GAT--TTT-----A-T--G-CCTTGGATCGA-T--ACACATTC-C--TA--AGTGTGC-TACATTTTTT------TGA-C-GTCATAATGCTTTTCTCCAAGTACAGCCAAATGA-CGTCACAA--------------TAGAGC-TCGCGCT--CCTGTGCTAAAACCTGCACTCTAAACTAGCCCAG---CGG----C--AA-TA---CACTCTA---CGCCATAC----G-C-TCTGAACCCCGGCCGGGCCT-ACCGG---C--------------------CTC--------TA-AAC--TCACCCGTG---CTATA---------G-C------------CCGGACACCCCTGCAGGGGTCAAA-----------TCGCTT---GACCAATCAGCAT
gi|5 : aAAGAAGA-A-GAAACTGAGCCGAAAGTAGAGATGGTGCTTG-AACTGTTTTT--AT-GCT----G------AACTGTTTAAA------------------AACTG------------ATTTAAAAAC-ATTGTGCATTG-------TT-CTTTAATAAACATGTAAA-CTTAAAC-CTTG-TGTTAGTCTTTATTATGCACAGGAATA-CAC-AGGATTTAATACAGAGGAAT---------------------ACACA-A-GAATTTTACT-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-TAAACACATTC-C--TA--AGTGTGC-TACAG-TTTT------TGA-C-GTCATAATGC---TCTCCAAG---------------TCCAAAACCG-----------AATGAC-TT-CACAATCCTGTGCTAAACCTGC-ACTCTCAACTAGGCCAG---CGG----CTTAACTAGACCGACCTA---TAAA--CCG---GCC-TCTAAA-CCCGGTC-GGCTC-ACCGGCT-CT---AGACCCGGCCG----GCTCACCGGTTATA-AAC--CAGGCCG-GGCTC--TA---------GACACGGCCGGGTAGCCGGCGACCCCTG-TGG---CAAAACTGCGCATGTC--CTT---GACC--CCAGCGTCCTAGATATTG-AA-CC-----ACCC-ATCGGGtgacctcatttgcataaaaagtgcactcagttgacctccctatcgaggg
gi|6 : GAA-CTGGGCCTCTACAGATCC-CTGCAG-AAC------GAGC-T----CCG-GCC-AGGAAC-AAAGAA--GA-TTTTGCGGA-TCATTACCACCACCAC-------TAGGA-CGGGGATCG--TTAGAAC-CGCATTAATTGTGCTGAGGTAA-TGAGATGGG-AA-TC-TACCGAGCAGTTCC-TG-CTGAAGAAGCTATTGGCACGTTTCCCA-AGAACTGGGTATCACGTGGGCAAAAATCTA-GTAACagcgtttatac
gi|6 : ATT-ACGCTACTAACATCCTC--CGTGCTA-CACCT-TGCGGTTGTTCGGCCAAA------CAGGACATTTG-GTCGCatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatattacgctactaacatcctccgtgctacaccttgcggttgttcggccaaacaggacatttggtcgc
gi|7 : gaactgggcctctacagatccctgcagaacgagctccggccaggaacaaagaagattttgcggatcattaccaccaccactaggacggggatcgttagaaccgcattaattgtgctgaggtaatgagatgggaatctaccgagcagttcctgctgaagaagctattggcacgtttcccaagaactgggtatcacgtgggcaaaaatctagtaacatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatATGA-CGCG--AGAGG-A-AA-TACAGGCAATA-----GAG-GAATGA------TTCACCAGTTCTA-GGA-AGATT-----ATGGATAGACG--AAGTA-TA-GTCTGGCGGAA--TAAAGTGTTA---GTACAGA---GATGCGTCGCGCATCGATTTA---CAGC--TGGA-C-G-ATCTAAAAAA--T--TGGGTGTTTTATGAGTTCAT-----GTATTGCGTCC---CC-AT---GGAAC-----GTAGGAAGGAATATTAC-TGGCC-GCCG-------TTTTTAG-GCGA---CATGT-A--TGAAAAAAGACC-T--CTGG-------------TATCAGT-CTGGTTGTA-CAAGTGCTT-ATA-CG-TTATTGAACGGC-ACTGCTAA
gi|8 : gcCC-AGGCTTAGGATTTTTTTTCCCGGAGATCCCAGAATCAGAAGATGTAACA-GGGATGGAA-CTGGGTCTTTACAA--CC-CT-CAG-AAT------GAGCCT----CCG-GCC-ATAAAC-AAAGAA--GA-TTTTGC-GA-TCATTTCCACGA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGA-GTAA-TGAGATTGGAAA-TCATACC--ACAG-TCC-T-ACTGAAGAAGC---TGG----------A-AAAACTG------AC-----C-----TCTA-A-AAACCTAGG-AAGGAA-TA-CACCCCAGATT-ACGCTACTAAC-----C--CGTGCTA-CAC-T-TGCGG------AC--AAtgaaagatttggg
gi|9 : gacCC-ATGACCCAAAGAATAGATTTT-GC-TACTCATTTCCACC--CACGTTAGGTTA-GA-C-GGGATAG--TC--AAC-AGAATTAA-TGTGTGGAGA-GA-TGAGATTGGAAA-CCATACA--AGAA-TCC-T-ACTGAAGAAGA---TGA----------A-GGAGCTG------AC---GGCAAAAAT--------CCCAAGG-ACGG-A-----ACT---------CGCCACTAAC-----C--CATGCTA-CAC-C-TGTGG------AG--AAATACTAGTAGGAC-ATTG-GT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CCCCCAAACTTGACCCAAGTTAATATATAACTTATTTGTTACCTGCGTCCGCCCGTTAGGTACTAG
Unaligned ( gi|18 ): GCATCCTAGATATTGAACCGGCCATCAGGACAGTTTATA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111
lowQualScore : 222 2222 2222 1 222 11 1111 11 111 33333 1 333333 1 1 1 33333 1 11 1 11 2222222222222 222 222 22 1 22222 111 11111 11 22222 222 333333333 333333333333333333333 111 2222 1 1 444444444 1 1 222 2222 1 2222 77777777777777777 1 1 1 1 1 1 11 1 222 11 11 1 1111 1 222222222 1 1 22 1 11 111 1 333333333 1111 11 11 3333333 1 111111111 111 222222 3333 1 111 11 11 11 1 11 55555555555555555555555555555555555555555555555555555555555555555555555555555 222 1 3333333333 111111 1 3333333 111 11 888888888888888888888888888888888888888 11 3333333333333 11 11 111111111111111111111111111111111111111111111111111111111111111 44444444 111 1 11 1 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 11 1 2222 11 1 1 222 111111 1 4444444 66666666666666666666666666666666666 22222 222 1 3333333 222222 22 4444444 11 1 11 2222 2222222222222 11 22222 1 1 11 1 11 1 44444444444 1 11111 222222 1111 11111 1 2222222222222 1 111 22 1111 3333333333 33333333333 111 1 444444 33333333 111 3333333333333333333 11 22222 3333333 2222 1 1 2222222222222 1 2222 11 333 22 1 1 1 1 1 1 1 222 1 1 222 1 11 1 1 1 2 1 11 66666666666 1 1 1111 22222 333333333333 11 000000000000000000000000000000000000000000000 33333333 1 1 1 3333333333333 11 6666666666666666666666 111 11 222222 11 33333333333333333 2222 11 11 11 222222 1 1 111 9999999999999999999999999999999 11 3333333333 1111111 44444444444444444444444444 111 66666666666666666666666666666666666 11 1 666666666666666666666666666666 66666666666666666666 22222 3333333 22 2222 11 3333333 222 2 11 2
lowQualScore : 111 3333 3333 22 5 111 77 8888 6 88 555 33333 3 888888 88 3 3 3 33333 3 88 3 22 5555555555555 333 333 55 3 7 66666 999 88888 88 77777 888 333 333333333 777777777777777777777 1 333 7777 3 3 555555555 2 3 333 4444 7 3 2222 55555555555555555 0 4 3 3 3 3 3 7 3 1 88 1 5 222 1 88 1 66 5 5555 3 7 555555555 7 3 3 00 0 22 777 0 1 666666666 4444 33 88 2222222 0 3 888888888 55 777 0 22 3 444444 9 2 3333 0 444 33 6 88 55 2 00 99999999999999999999999999999999999999999999999999999999999999999999999999999 7 333 1 3 3333333333 888888 0 4 7777777 444 8 8 8 88 444444444444444444444444444444444444444 8 5 11 1111111111111 8 11 0 11 0 0 666666666666666666666666666666666666666666666666666666666666666 7777 0 55555555 777 0 11 66 0 1 2 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 88 3 7777 44 2 6 3 333 999999 6 5555555 77777777777777777777777777777777777 22222 333 3 4444444 666666 00 5555555 7 44 6 3 44 1111 9999999999999 44 22222 1 3 3 88 0 1 1 33 0 66666666666 333 0 8 3 22222 8 8 333333 7777 8 6 1 6 88888 1 6 6 7 6666666666666 6 6 6 99 99 6 6 3 6 3 3 6 111 0 8 8 55 0 4444 5555555555 8 3 33333333333 0 444 0 888888 2 3 8 88888888 8 000 1111111111111111111 0 11 8 6 7 6 33333 0 1111111 6 8888 1 3 3 6 7777777777777 3 3 6 8888 88 777 7 00 7 3 5 5 5 5 1 1 5 5 111 1 5 5 1 111 5 88 5 5 1 7 7 3 6 3 7 88 00000000000 3 3 9999 2 3 00000 0 8 11 99 8 444444444444 11 8 999999999999999999999999999999999999999999999 1 2 55555555 3 5 0 5 3 0 0 1111111111111 0 11 3 3333333333333333333333 444 6 66 1 6 333333 99 55555555555555555 0 2222 4 8 11 11 8 99 888888 0 0 3 666 3 3 2222222222222222222222222222222 33 2222222222 0 8 0 7777777 88 00000000000000000000000000 444 999 8 8 8 99999999999999999999999999999999999 8 11 0 333333333333333333333333333333 66 5 88888888888888888888 55555 6 6 9999999 22 3333 88 1111111 000 7 3 1 44 3 7 2
lowQualScore : ... .... .... .. . ... .. .... . .. ... ..... . ...... .. . . . ..... . .. . .. ............. ... ... .. . . ..... ... ..... .. ..... ... ... ......... ..................... . ... .... . . ......... . . ... .... . . .... ................. . . . . . . . . . . .. . . ... . .. . .. . .... . . ......... . . . .. . .. ... . . ......... .... .. .. ....... . . ......... .. ... . .. . ...... . . .... . ... .. . .. .. . .. ............................................................................. . ... . . .......... ...... . . ....... ... . . . .. ....................................... . . .. ............. . .. . .. . . ............................................................... .... . ........ ... . .. .. . . . .............................................................................................. . .. . .... .. . . . ... ...... . ....... ................................... ..... ... . ....... ...... .. ....... . .. . . .. .... ............. .. ..... . . . .. . . . .. . ........... ... . . . ..... . . ...... .... . . . . ..... . . . . ............. . . . .. .. . . . . . . . ... . . . .. . .... .......... . . ........... . ... . ...... . . . ........ . ... ................... . .. . . . . ..... . ....... . .... . . . . ............. . . . .... .. ... . .. . . . . . . . . . . ... . . . . ... . .. . . . . . . . . . .. ........... . . .... . . ..... . . .. .. . ............ .. . ............................................. . . ........ . . . . . . . ............. . .. . ...................... ... . .. . . ...... .. ................. . .... . . .. .. . .. ...... . . . ... . . ............................... .. .......... . . . ....... .. .......................... ... ... . . . ................................... . .. . .............................. .. . .................... ..... . . ....... .. .... .. ....... ... . . . .. . . .
lowQualScore : 000 0000 0000 00 5 000 55 0000 7 33 333 33333 3 333333 33 3 3 3 33333 3 33 3 77 7777777777777 333 333 33 3 3 77777 000 77777 33 77777 777 333 777777777 000000000000000000000 0 000 0000 3 3 333333333 0 3 333 3333 3 3 7777 33333333333333333 7 7 3 3 3 3 3 3 3 0 55 0 5 000 0 55 0 55 0 7777 3 3 777777777 3 3 3 77 0 55 555 0 2 555555555 2222 88 00 5555555 8 2 555555555 00 555 2 88 0 222222 8 5 0000 0 555 88 7 33 77 0 33 77777777777777777777777777777777777777777777777777777777777777777777777777777 3 333 0 3 9999999999 888888 0 2 2222222 000 0 0 0 66 888888888888888888888888888888888888888 0 0 00 8888888888888 0 00 8 00 8 8 555555555555555555555555555555555555555555555555555555555555555 2222 2 22222222 555 0 88 55 2 0 0 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 33 3 7777 77 0 7 3 333 000000 0 7777777 33333333333333333333333333333333333 00000 333 3 3333333 000000 77 7777777 3 00 7 3 77 7777 0000000000000 00 33333 0 3 3 33 0 2 0 22 0 00000000000 888 0 0 2 22222 0 0 000000 0000 0 7 5 7 00000 3 7 7 8 7777777777777 7 7 7 22 22 7 7 7 7 2 3 7 777 8 0 0 44 8 8888 0000000000 0 2 00000000000 8 222 0 000000 5 5 0 44444444 0 000 3333333333333333333 8 66 0 7 3 7 33333 7 7777777 7 3333 0 3 3 7 7777777777777 3 7 7 3333 33 777 3 77 3 3 5 0 0 0 0 0 0 0 000 0 0 0 0 000 0 00 0 5 0 3 3 3 7 3 3 33 77777777777 3 3 0000 5 2 00000 8 0 44 44 0 000000000000 00 0 777777777777777777777777777777777777777777777 0 5 88888888 2 5 0 0 2 8 8 8888888888888 8 66 8 2222222222222222222222 888 5 55 0 0 000000 00 88888888888888888 8 4444 6 0 00 00 0 00 888888 0 0 2 222 2 2 0000000000000000000000000000000 88 5555555555 2 8 8 5555555 22 00000000000000000000000000 000 222 0 2 0 66666666666666666666666666666666666 0 00 4 000000000000000000000000000000 00 6 22222222222222222222 88888 7 7 0000000 33 0000 00 0000000 555 3 3 0 77 3 3 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACCGCACAGTCGTACCGTGGANNACACGTGAGACTTGTGTAAGGCAGCGGATGA-CGCGCCAGCGG--AAATACAGG-AGTA-----GAG-GAATTA------TCNACCAGTG-TA-AGA-AGAT-----TATGT-TAGACG--AGGTA-TACGTCTGGGGGAA--TAAAGT-TTA---GTACAGA---GATGC-TCGC-CATCGATTAA---C-GC--CGGA-CCG-ATC--AAAAA--T--TGGCGGTTT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTNGGAAGGAATAT--C-TG-CC-GCCG-------TTTCTAG-GCGA---CATGT-AC-TGAAAAAAG-CC-T--CTGA-------------CACCAGTATAGTNTTA-CCAGT-TTT-ATA-CG-TTATTGAACGGC-ACTNCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGAAATTGTTTNGGTGCATAGCAGGCNGGATGTGGGAAAAACCGNTANAGTGATGCGTTTCCGGGGGACGAAGAG-CT-GAC-ATAA--TACATA-CAGCACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAATA--CCATGCACA---GCCCCTTTTTACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACAC--AAACATGAA--GTGGGCAGGCAGCCCTA----G----------------CTCGTTAAG-GCG-------AAATTGGCCACCATG--A---GACTCG---AGCC-GCGCACT---GGGAAAAANCTCAATT-GGCATCATTGC--A-GC----TGGC-A--C-GAGGC-CGGCA-A----CT---GGGAA-AAAA-CTCAA-TTGGCA-CCAT------CGCTGCCANGC--TG--------GGCA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACCC--AATTGGCACCAT-GNGCCAGT--GC-GCTG------------AGAGGACGCGTN-TGGC---AGC---CGANT-AGNCACTGGGGAAA---AAC--CCA---CTG-GCACNATG-CGAGNTGGGCA-CTG-AGCTAGC-CTGGATGG-AACTCT---ACGA-GC-ATANAAG--AA-GCAA-AGCCG--CTC--GGC-ACTCTA---T-CAC--TCT---TCAC-ATC--GACT-TCA-A--CCTGACCTAGAGAGCACAT-GGCT---CAGAAAA--CAG-CTAGAAATTCGTGG-ACA------AGAGCTCAGAA-----GAAA----GTGAACGA-TAACA--------TGG-T-A-CAGA---AA-AAGACT---GAGAATGCAA--C-A-AGATT-TCTTGAGCGAA---A---AGAATAGACG-GGGA-GTTACAG-G--AGGCTACTACATTG----ACAGCAGACTGA-AAGAAAGGCCAAGACTGAGGGTTNTTACCTA-GCCA-GAATCCTA--CAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGCAACG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GATTTTTGC-GA-TCATTTCCACNA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TGACTGAAGAAGC---TGG----------A-AGAACTG------AC--GGGCAAAAATCTA-G-AACCCTAGG-AAGG-A-T--CACTCCAGATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AA-GCAACGTTTATCCGC----AGACCAGTA----AANA-AAGAT-TATCCCGCAG-ACCCCAGT--A-AGAA-ATCCGGC----CGATAAACC--AGCAGAA-CGAAACACAAACA-AAGGGATCCT-TGCTACACAGTGGCGGGNAAATTAGGNACTGGATCAGTGGACTGAGTCCGNAAGGAACAAGCGGAGATCGATGGAANGATGATTGGGCATCCCGCTACCTGGCCCAAAACCCGCTGTGAAGAGANGAGTACAAACCGTTAG-AGA-TGTG-GAATC--CCCGCACCTAA------C-GAAGAACC-GCC-AAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTG-AACTGTTTTTTTAT-GC----TG------AAC--TG-TTTAAACC-TT---AAGCTTGAACTGT-TTTTA-GCTGTTTAAAAACTGTTNTGCATTGTT-------TCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATGCACAGGAATA-CAC-AGGATTTAATACACNGGAAT-TNAC-GGATTTA--------ATACA-A-GGAATACACA-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-T-AACACGTTC-C--TA--AGTGTGC-TACA--TTTT------TGA-C-GTCATAATGC--CTCTCCAAGTGCGA-NTTCAAA--A-CG-CA---------AAT--AGC-TT-CAC---CCTGTGCTAAAACTCG-A--CTCTAAACTAGGCCAGCGGCT-AA-TAG-CCGACCTA---CGAC-TCCG---G-C-TCTAAA-CCCGGCCGGGCTC-ACCGG---CT---AGACCCG---G----GCTC--------TA-AAC--CCGGCCGNGC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAAA-----------C--CTC---GACC--CCAGCGTCCTAGCTATTGCAACC------GCCC-ATCGGGGCCAGACCGCCGCTTGACTCAATCAGAAGCCGCATTGCTTGACCTCATTTGCA-TAAAAAGTTGCACTCA-GTTGAACCTCCCTATNGAGGG
Reference ( family-3 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACCGCACAGTCGTACCGTGGANNACACGTGAGACTTGTGTAAGGCAGCGGATGA-CGCGCCAGCGG--AAATACAGG-AGTA-----GAG-GAATTA------TCNACCAGTG-TA-AGA-AGAT-----TATGT-TAGACG--AGGTA-TACGTCTGGGGGAA--TAAAGT-TTA---GTACAGA---GATGC-TCGC-CATCGATTAA---C-GC--CGGA-CCG-ATC--AAAAA--T--TGGCGGTTT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTNGGAAGGAATAT--C-TG-CC-GCCG-------TTTCTAG-GCGA---CATGT-AC-TGAAAAAAG-CC-T--CTGA-------------CACCAGTACAGTTTTA-CCAGT-TTT-ATA-CG-TTATTGAACGGC-ACTNCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGAAATTGTTTNGGTGCATAGCAGGCNGGATGTGGGAAAAACCGNTANAGTGATGCGTTTCCGGGGGACGAAGAG-CT-GAC-ATAA--TACATA-CAGCACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAATA--CCATGCACA---GCCCCTTTTTACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACAC--AAACATGAA--GTGGGCAGGCAGCCCTA----G----------------CTCGTTAAG-GCG-------AAATTGGCCACCATG--A---GACTCG---AGCC-GCGCACT---GGGAAAAANCTCAATT-GGCATCATTGC--A-GC----TGGC-A--C-GAGGC-CGGCA-A----CT---GGGAA-AAAA-CTCAA-TTGGCA-CCAT------CGCTGCCANGC--TG-------AGGCA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACCC--AATTGGCACCAT-GNGCCAGT--GC-GCTG------------AGAAGACGCGTN-TGGC---AGC---CGANT-AGNCACTGGGGAAA---AA---CCA---CTG-GCACNATG-CGAGNTGGGCA-CTG-AGCTAGC-CTGGATGG-AACTCT---ACGA-GC-ATANAAG--AA-GCAA-AGCCG-GCTC--GGC-ACTCT----T-CACTATCG---TCAC-ATC--GACT-TCA-A--CCTGACCTAGAGAGCACAT-GGCT---CAGAAAA--CAG-CTAGAAATTCGTGGAACA------AGAGCTCAGAA-----GAAA----GTGAACGA-TAACA--------TGG-T-A-CAGA---AA-AAGACT---GAAAATGCAA--C-A-AGATT-TCTTGAGCGAA---A---AGAATAGACG-GGGA-GTTACAG-G--AGGCTACTACATTG----ACAGCAGACTGA-AAGAAAGGCCAAGACTGAGGGTTNTTACCTA-GCCA-GAATCCTA--CAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGCAACG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GATTTTTGC-GA-TCATTTCCACNA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TGACTGAAGAAGC---TGG----------A-AGAACTG------AC--GGGCAAAAATCTA-G-AACCCTAGG-AAGG-A-T--CACTCCAGATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AA-GCAACGTTTATCCGC----AGACCAGTA----AANA-AAGAT-TATCCCGCAG-ACCCCAGT--A-AGAA-ATCCGGC----CGATAAACC--AGCAGAA-CGAAACACAAACA-AAGGGATCCT-TGCTACACAGTGGCGGGNAAATTAGGNACTGGATCAGTGGACTGAGTCCGNAAGGAACAAGCGGAGATCGATGGAANGATGATTGGGCATCCCGCTACCTGGCCCAAAACCCGCTGTGAAGAGANGAGTACAAACCGTTAG-AGA-TGTG-GAATC--CCCGCACCTAA------C-GAAGAACC-GCC-AAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTG-AACTGTTTTTTTAT-GC----TG------AAC--TG-TTTAAATT-TT---AAGCTTGAACTGT-TTTTA-GCTGTTTAAAAACTGTTNTGCATTGTT-------TCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATGCACAGGAATA-CGC-AGGATTTAATACACNGGAATTTNAC-GGATTTA--------ATACA-A-GGAATACACA-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-T-AACACGTTC-C--TA--AGTGTGC-TACA--TTTT------TGA-C-GTCATAATGC--CTCTCCAAGTGCGA-NTTCAAA--A-CG------------AAT--AGC-TT-CAC---CCTGTGCTAAAACTCG-A--CTCTAAACTAGGCCAGCGGC--AA-TAG-CCGACCTA---CGAC-TCCG---G-C-TCTAAA-CCCGGCCGGGCTC-ACCGG---CT---AGACCCG---G----GCTC--------TA-AAC--CCGGCCGTGC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAAA-----------C--CTC---GACC--CCAGCGTCCTAGCTATTGCAACC------GCCC-GTCGGGGCCAGACCGCCGCTTGACTCAATCAGAAGCCGCATTGCTTGACCTCATTTGCAGTANAAAGTTGCACTCAGGTTGAACCTCCCTATGGAGGG
gi|1 : TTCTTGT---CTGACCGCACAGTCAT----TGGATAACACG-GAGACTT-T-TAAG--AGCAGA----CGCGCCAACGG--ATAAACAGA-AGTA-----GAG-GAATTA------TCAACCAGTG-TA-AGA-AGAT-----TATGT-TAGACG--AGATGCTATATCTGGG-------AAAAT-TTA---GTACAGA---GATG--TCGC-CATCGATTAA---C-GC--TGGAGCCG-ATC--AAAAAATT--TGGTG--TT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTGGGAAAGA-TAT--T-TG-CC-GC-G-------TTT--AG-GCGA---CATGT-ACCTGAAAAAAA-CC-TTTCTAA-------------CA--AGTACACGATTA-CCAGT-TTTTATA-CG-T-ATTGAACGGC-ACTTCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAG--ATTGTTTTGG-GC-T-GCAGGCTGGATGTGGG--AAACCGGTAAAGTAATGCGTTTCCGGGAGA-GAAGAG-CTCGACAATAA--TACA------CACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGTATT-GAA--GCCGGACATTTTGTA-------AAAAAATAA--AAATA--CCAT-CACA---GCCCCTTTTTA-G-GGCCTACTTT-AAACAAAAT----ATGAGTG-ACACACACAAAAACAT-AA--GT--GCA--CTGCCCTA----G----------------TTCGTTAAG-GC---------AATTGGCCACCATGCCAGCTGACCTG---AGCC--CGCACT---GGGAAAAACCCTAATTGGGCATCATTGC--A-GC----TGGC-A--C-GAGGC-CAGC--A----CT---GGAAA-AAAAGCTCAATTTGGC--CCAC------CACTGCCAAGC--TG--------CGCA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACC----ATTGGCACT----TGCCAGTAGAC-ACTG------------AGA--ACCATTT-TGGC----GC---TGAGTCAGGCACTGGGGAAA---AAC--CCA---TTG-GCACTGTG-CCAGCT-GGCACCTG-AGCCAGCACTGGAGAA-AATTTT---ACGG-GCTATAAAA---AG-GCAG-AGCC---CTC---GC-ACTC-----T-CAC--TCT---TCAC-ATC--GACT-TCA-GACCCTGACCT-GAGA--ACAT-GGCT---CAGAAAA--CAGCCTAGAAATTCGTGG-ACA------AGAGCTCAGAAG----GAAA----GTGAATAA--AACA--------TGGCT-A-CAGA---AA-AAGACT---G-GAATGCAA--CAA-AGATT-TCTTGAGCGAA---A---AG-ATAGACA-GGGA-GCT-CAGCG--AGGCT--TACATGG----ACAGCAG-CTGA-AA-AAAGGCCAAGACTGAGAGTTTTTACCTACTCCACGAATCCTA--CAGACC-AGGCTTGGGATTTTTTT-CCCGGAG-TC---G---CAAAAGATGC-ACGCGGACTGGAA-CT-GGCCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GA--TTTGC-GA-TCATTACCACCA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGATAA-TGAGATTGG-AA-TCATACC--AC-G-TCCTTGCCTGAAGAAGC----GG----------A-A-AACTG------AC--GGGCAAAAATCTAGG-AACCCTAGG-AAGG-A-TTACACTCCAGATT-ACGCTA-TAAC-----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AAGGCAGCATTTATCCGC----AGACCAGTA----AAGA-AAGATGTAT-CCGCAG-A--CCAGT--A-AGAA-ATCGGGC----CGATAAACC--AGCAGAAGTAAAACACAAACA-AAGGGATCCTGTGCTACA-AGT-GC-GGTAAATTAGGCACT-GATCAGT-GACTG---TCGCAAGGAACAAGCGGAGATCGATGGAAGGATGATTGGG---CCCGCTACCTGGCTCAAAACCCG-TGTG-AGAGAAGAGTACAAACCGTTAGCAGATTGTGAGAATC--CCCGCACC--A------CTGAAGAACC-GCC-TAAAAGAAGAGAAGAAA-TGAGCCG-AAGTAAAAA-----CTTGAAACTGTTTTTTTAT-GC----TGTTTTAAAAC--TG-TTTTCATTGTTAAAAAACTTGAACTGTATTTTATGCTGTTTAAAAACTGTTTTACATTGTT-------TCTTTAATAAACATGTAAAACTAAAAC-CTTGGTGTTAGTCTTTA-TATGCAGAGGAATACCACAAGGATTTTATACACTGGAATTTCAC-AGATTTATGCGATCGATACA-G-GGAATACACAGGGAATACAC-G------GATA-TTT-----ATT--G-C----GATCGA----------TT-C--TA--AGTGTGC-TACA--TTTT------TGA-CAGTCATAATGC--CTC-CCAAGTGCGATTTTCAGA--A---------------AAT--AGCTTT-CAC---CCTTTTCCACAACTCA-A--AGCGAAAGTAGACCA-CGGC--AA-TAG-CCAACCTA---TAGC-TCCG---G-CATCTAAA-CCCGGCCATGCTT-A-------TT---A-ACCCG---G----ACTC--------TA-AAC--CCGGCCG-GC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAAA--------------CTT---GACC--C---CGTCCTAGCTATTGCAACC------GCCCAATCGAGGCCAGACCACCGCTTGACTCAATCAGAAGCCGCATTGCTTGACCTCATTTGCAGTAAAAAGT--CACTCA-GTTGAACCTCCCTATGGAGGG
gi|10 : taatgaaaggcttcgaacacctgtatttataggtgaaaaaaaggtaatgcattcaaccgtgtctgtgcatcacgtgatcaacccccttgtgcgttagtgtgcgttagcattcaTTACCTA-GCCA-GAATATGT--CAAACCCAGCCTTAGGAGTTTTTT-CCCGGAG-TC---A---CA--ATATGCAACG-GAACTGGAA-CTAGGCCTCTACAA--CA-CG-AAG-AATGCATCGGAACCTGAGGCCGCGCCAATGAGC-AAAGAA--GA-TTTTGC-GA-TCATTTCCACG------------TA-GA-C-GGGATCA--TG--AAC-AGAATTAA-TGTGCTG-GGTGA-TGAAATTGG-AACTCATACC--Agggctata
gi|11 : G--AAA------CAGGAAAATCATGTCTTCGGATTGCTCCCCAGACAC-GCGAGATTAATTCGCCATAAGACCAGTAACACAATA-GAGAT-TATCACGCAATACCCCGTT--A-AGAA-ATTCGGCATCGCAGTAATTCGAAACTGAATCGAAAC-TAAAC--AAGGACTCCT-g
gi|12 : GATTTTACTG------AAT--TTTTTACAA-TTAG-C----GATCGAAT-AACACATTT-CCGTA--AGTGTGCTTACA--
gi|13 : gagatatacacttactgcga-A--CTCTAAACTAGGCTAA----------AG-C-GCTCTA---C-AC--CCG---G-T-TATAAA-CCCGACCGGGCTC-ACCGGGCTTT---AAACCTG---GCCGTGCTA--------TA-AAC--CCGGCTGGAC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAaactatatttcattacttaattgaaacgattttccatacatgctctacaaaccaaaaacc
gi|14 : cctgcGA-CTTACACC-TGTATAT---AGAAG-AAC-------CTGCGT-TT-GAA--GCCGGACATTTT-TA-------AATAAA-AA--AAAAA--CCATGCACA---GCC--------------CTACTTTAAAACAAAAT----ATGAGTG-AC--ACAC--
gi|16 : -----CTTG-AACTG--TTTTCAT-GCTTATTG------AAC--TG-TTTAAA
gi|17 : gggactgtgTTTATTATGCACAGGAATA-CAC-AGGATTTAAAACACTGGacattgtgc
gi|2 : AGAGTCG-GAC-ATAA--TA-ATA-CAGCACATTTACTCCCA-GATC-AT--GA-CTTACAC--TATATCT---AGAGA-ATC-------T-GCGT-T--GAA--GCCGGACATTT-GTA-------AA--AATAA--A--CA--CCATG-ACA---GGCCTTTTTGACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACAC--ATACATGAA--GTGGGCAAGCAG--CTA----G----------------CT--TTGAGAGCG-------A----------CATA--A---GATTCGATAAGCTAGTGC-CT---GGGAAAAAACTCAATT-GGCACCATGCC--A-GCAGTATGGC-AACT-GAGAC-CAGC--A----CT---GGGAAGAAAA-CTCAA-TTGGCA-CCATGGGATGCGCTGCCACCT--TGAAAAAAAAGACG-CGTCATGG-CCC--CAA--CCGAATGCCTTT-GGGAA--AAAACCAGAATTGGCACCATCGAGTTAG---GCAACTG-------------GAGGTCGCGGA-TGGT---AACTCGCGACT-AGA-----GGTAAATGCAATGGCCG---CTG-GCACACTA-CGA
gi|2 : gagc----CT---GGGAA-AAAA-CTCAA-TTGGCA-CCAT----------GCCA-GCAGTA-------TGGCAAC----TGA-GAC--CAG--C-----AC---T-GGGAAGAAAACTC--AATTGGCACCAT-GGG---AT--GC-GCTGCCACCTTGAAAAAAAAGACGCGTCATGGCCCCAAC---CGAAT--GCCTTTGGGAAAA---AA---CCAGAATTG-GCACCAT--CGAGTTAGGCAACTGGAGGTCGC---GGATGGTAACTC----GCGA--C--TAGAGGTAAATGCAATGGCCG--CT---GGC-ACACTACGATGCACT-CCT---TCACTATC--GACT-TCAGA--CCTGACC-AGAGAACA-AT-GGCT---CAGAACA--C-G-CTAGAATTGCGTGGAACA----------CTCAGAA------AAA----GTGAA----TAACA--------TGG-T-ATCAGA---AAGAAGAC----GAGAATGCAA--C-A-AGATT--CTTGAGCGAAGTAA---AGAATAGACA-AG-A-GT-ACAG-G--AGGCTAC---ATTA----ACAGCA-ACTGA-CGG----GCCCAGACTGAAGGTTATTTCCTA-GCCA-GAATCCTAGGTAGACC-AGGCTTTGGAATTCTT--CCCGGAG-TC---AT--CA--AGAT-TAACG-GGACTGGAAACTGGGCCACTACAA--ATGCT-CAGGAAT------CAACCT----CCG-GC--ATGACA-AAAGAA----TTTTGGC-GA-TCATT-ACACGAACAC-------TA-GATC-GGAATTGATTT--AACACGCATTAA-TGTGCTGAG-TAAGTGAGAT-GG-AA-TCATAC---ACAG-TCC-TG-CTGA-GAAGC---TGG----------ATAGAACTGT-----AC--GGGAAAAAATCTA-G-AACCTTAGGGAAGGCACT--CACTCCTGATTCACGCTACTAATA----CGGCGTGCTAACAC-TCTGCGG------TG--AA-------C--GAC--TTG-GTCGC-GGAT-GCCC---AGA-AA---AACGATTATC-------AGACCA-TA----AGAACAGGAT-TATCCCGCAG-ACT--AGTTGACAGAATATCTG-C----CGATTAACC--AGCAGA---GAAAAACAATCAGAAGGGA-CCT-TGC-ACACAGTGGCGGGGAAATTAGAAACTGGATCAGTGGACTGAGTCCGGAAG-AACAAGCGGAGATCGATG-AATAATGATTGGACATCCCG-TACCTGGCC--AAACCTGCTGTGAAGAGACGAG---AAAACGT-AG-AGAGTGTG-GA-TC--CCCGCACCTA-------C-TAAGAACCCGCT-AAAAAGAAGC-AA-AAACTGAGCCGAAAGTAAAAC-----CTTG-AACTGTTTTTTTATAGC----C--------ACGGTGGTTTAAGCC-CT---TAGGGTGAG-----------GCTGTTTTA----TGTCTTG----GTG-------TGTTTA-TAAACATGTAAGACTTAGATACTTGGTGTTAGTCTTTATTATGCA-------------AGAATT-AA-GCACAGGAATG-AACTGGATTTC---------TGCG-ACGGCATA-ACA-----TTCGCTAAAGTGTGATCATTT-------T--GAC----G-TC-A-T-AGCATGCTCTC--TGGCAGTGT-C-CAGA--TTTCAGAAAATGAGC-TTCA----GC--CTTTCCA----CGA-ACTCAAA--A-CAGTAGACCACGGCAAT--AGC----CAA---CTTAT----AAAC-CG-AAACTCTAAACCCGGCTCGGGGCTCAA-CGG-GCAA--TAAAGCGAC-GCCGAGTG-C-TATAAA-CCCGGC--GGCTCGACCGG---CTCACAGGCCGA---T----GCTA--------TATAACTTCAGGCCGTGC--T--------ATAAGAACGCGC-------CGGGTCACTC------GGG----------------C--CTCTAAAACC--C--GCGGC-TGGCCGGTGCTACCCGGCGAACCC-TGCTGGGTCAAACTGC----TGAC--AATCA-------CAT-----GACCTC-TTTGCA-TACAAAGTTGCACTCAGGTTGAACCtgcactccttcactatcgacttcagacctgaccagagaacaatggctcagaacacgctagaattgcgtggaacactcagaaaaagtgaataacatggtatcagaaagaagacgagaatgcaacaagattcttgagcgaagtaaagaatagacaagagtacaggaggctacattaacagcaactgacgggcccagactgaaggttatttcctagccagaatcctaggtagaccaggctttggaattcttcccggagtcatcaagattaacgggactggaaactgggccactacaaatgctcaggaatcaacctccggcatgacaaaagaattttggcgatcattacacgaacactagatcggaattgatttaacacgcattaatgtgctgagtaagtgagatggaatcatacacagtcctgctgagaagctggatagaactgtacgggaaaaaatctagaaccttagggaaggcactcactcctgattcacgctactaatacggcgtgctaacactctgcggtgaacgacttggtcgcggatgcccagaaaaacgattatcagaccataagaacaggattatcccgcagactagttgacagaatatctgccgattaaccagcagagaaaaacaatcagaagggaccttgcacacagtggcggggaaattagaaactggatcagtggactgagtccggaagaacaagcggagatcgatgaataatgattggacatcccgtacctggccaaacctgctgtgaagagacgagaaaacgtagagagtgtggatccccgcacctactaagaacccgctaaaaagaagcaaaaactgagccgaaagtaaaaccttgaactgtttttttatagccacggtggtttaagcccttagggtgaggctgttttatgtcttggtgtgtttataaacatgtaagacttagatacttggtgttagtctttattatgcaagaattaagcacaggaatgaactggatttctgcgacggcataacattcgctaaagtgtgatcattttgacgtcatagcatgctctctggcagtgtccagatttcagaaaatgagcttcagcctttccacgaactcaaaacagtagaccacggcaatagccaacttataaaccgaaactctaaacccggctcggggctcaacgggcaataaagcgacgccgagtgctataaacccggcggctcgaccggctcacaggccgatgctatataacttcaggccgtgctataagaacgcgccgggtcactcgggcctctaaaacccgcggctggccggtgctacccggcgaaccctgctgggtcaaactgctgacaatcacatgacctctttgcatacaaagttgcactcaggttgaaccacgaggacggcgcgtttagtatact
gi|3 : gagcagagtcggacataataatacagcacatttactcccagatcatgacttacactatatctagagaatctgcgttgaagccggacatttgtaaaaataaacaccatgacaggcctttttgacggggctactttaaaacaaaataatgagtgaccgacacatacatgaagtgggcaagcagctagctttgagagcgacataagattcgataagctagtgcTTCTTGTAACCCGACC----AGTTGTACCGTGGAATACACGTGAGATTTGTGTAAGGCAGCGGATGATCGCTCCAGCGGGAAAGTACA-G-AGCAATTTCGGGCGAATTACTTTGTTCT-TCAGTG-TATAGATAGATTTTTCTGTCT-TAGACACTGGGTA-TACATCTGAGGGAAACTA---T-TTAATGGTACATAATTGATGT-TCGC-CATCGA--AATTTC-GCCTCGGA-CCATATC--AAAAA--TCGTGGCGGTTT---GATT--ATTCTTAGTATTGCGTCCCATCTTATTTCG-AACTCGTAGTTGGAAG--ATAT--CTTG-CCTGCTGATTTGTTTTTCTAGAGAGAACCCATGTAAC-TG--AAAAG-TCGT--CTGATGATAACCGTATCCACTAGTATAGTCTTAGCCAGT-TAT-ATAGTGTTTAATGAACGGCTACTACAAacgaggacggcgcgtttagtatact
gi|3 : TATGGAGAAATTGTTTGAGTGCATAGCAGGCAGGATGTGGGAAAAACCGTTAC-GTGATGCGTTTTCAGGGGACGAAGAG-CT-CAC-A-AATTTACCTAGCAGCACA-TACATCACACGAACTATATGAGCTTACACCGTGTTTCTATCAGAAGCAGCAGCCTATC-ACAT-TTAGAAGTGCTGACCAGTTGCTACTCAACTAGCATATAATTAGGTAGTCTATGCACAAGCGTCCCTTTTTATATGTGCTACTTTTAAA-AAAATGGAAATTTATATACCG---C--AAAGTCGGACTGTAAGCAGGCAGCTCTGTCACGGATAACACCCATTGCTCTCGTTAAGTGCATCCGTCCAAATTGGCCACT-----A---GACTCG--------GCATACTAGAGGTAGAACTCTCAATT-GGCATCCATGCCTACGCT---TGGC-A--CTGAAGC-CTACA-GATCCCT---CGGAA-AAAA-CTCAA-TTGGC--CCAT-------G--GCCAGTC--TG--------GAC--------GA-G-C--CAGT-C-----AC---T-GGGGA--AA--CC--ACTGTGCACAAT-Gtgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaattggccactagactcggcatactagaggtagaactctcaattggcatccatgcctacgcttggcactgaagcctacagatccctcggaaaaaactcaattggcccatggccagtctggacgagccagtcactggggaaaccactgtgcacaatgtcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|3 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagc----TGGCCA--C-TAGACTCGGCATA----CTAGAGGTAG-AACT-CTCAA-TTGGCATCCAT-------GC--CTACGC--TT--------GGCA-C----TGAAGCCTACAGATC-----CC---TCGGAAA--AAACTC--AATTGGC-CCAT-G-GCCAGT------CTG----------------GACG------------AGC---C-----AGTCACTGGGGAAA--------CCA---CTGTGCACAATGTCAAGATGGGCA-GT----CTACCTCTGGCT------TCTCAAATGAAGC-AGATAAG--AA-GCAA-AATCGAGCTCTGGGCGACTCTAA--T-CAA-ATCGGGGTCAC-ATCCTGACTATCA-A--CCTGACCTAGAGAGCACATGGGCTGCGTAGAAACTTCAG-CTAGAAATTCGTGGTAAAGTATGCAGAGCTTAGAGTACACGAAAACACGTGGACGACTACCATTCATTTGTGG-TAA-CAGATACAA-TAGTCTCGAAAAAATGCAAACC-ACAGATTGTCTTGAGCGCA---CGTTATAATGTACGCGGGAGGTTACAG-GCCAGGTTACTATTTTGTATCACAGCAGACTGATAAGAAAGGCAAGAATTGAGtcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|4 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaatGAGTACAAACCGTTAG-AGA-TGTG-GAATCTGCCCGTACCTAAACAAAGT-GAAGAACC-GCCTAAAAAGAAGA-A-GAAACTTAGCCGAAAGTAAAAA-----CG-G-GACTGTGCTTT----AG----TG------AAC--TG-TTT------TT---ATGCTT-AACTGT-TTTTA----------AAAC-ATTGTGCATTGTTCTTGTTTTCCTTAATAAACATGTAAA-CTTAAAC-CTTG-TG-------TTATT--------------CTT-GGGATTTA-------------TTAT-GGATTTA--------ATACACA-GGAATACACA-AAATTTCACAG------GAT--TTT-----A-T--G-CCTTGGATCGA-T--ACACATTC-C--TA--AGTGTGC-TACATTTTTT------TGA-C-GTCATAATGCTTTTCTCCAAGTACAG-C--CAAATGA-CGTCAC--------AATAGAGC-TCGCGCT--CCTGTGCTAAAACCTGCA--CTCTAAACTAGCCCAGCGGC--AA-TA---CACTCTA---CGCCATAC----G-C-TCTGAACCCCGGCCGGGCCT-ACCGG---C--------------------CTC--------TA-AAC--TCACCCGTGCTAT--------A---------GC-------CCGGACACCCCTGCAGGGGTCAAA-----------TCGCTT---GACCAATCAGCAT
gi|4 : aTTGACCTCATTTGCA-TAAAAAG-TGCACTCA-GTTG-ACCTCCCTATCGAGGGtgacctcatttgcataaaaagtgcactcagttgacctccctatcgaggg
gi|5 : agagtacaaaccgttagagatgtggaatctgcccgtacctaaacaaagtgaagaaccgcctaaaaagaagaagaaacttagccgaaagtaaaaacgggactgtgctttagtgaactgtttttatgcttaactgtttttaaaacattgtgcattgttcttgttttccttaataaacatgtaaacttaaaccttgtgttattcttgggatttattatggatttaatacacaggaatacacaaaatttcacaggattttatgccttggatcgatacacattcctaagtgtgctacatttttttgacgtcataatgcttttctccaagtacagccaaatgacgtcacaatagagctcgcgctcctgtgctaaaacctgcactctaaactagcccagcggcaatacactctacgccatacgctctgaaccccggccgggcctaccggcctctaaactcacccgtgctatagcccggacacccctgcaggggtcaaatcgcttgaccaatcagcaAAGAAGA-A-GAAACTGAGCCGAAAGTAGAGATGGTGCTTG-AACTGTTTTT--AT-GC----TG------AAC--TG-TTTAAA---------------AACTG-----------ATTTAAAAAC-ATTGTGCATTGTT--------CTTTAATAAACATGTAAA-CTTAAAC-CTTG-TGTTAGTCTTTATTATGCACAGGAATA-CAC-AGGATTTAATACAGAGGAAT---------------------ACACA-A-GAATTTTACT-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-TAAACACATTC-C--TA--AGTGTGC-TACAG-TTTT------TGA-C-GTCATAATG---CTCTCCAAG-------TCCAAA--ACCG------------AAT--GAC-TT-CACAATCCTGTGCTAAACCTGC-A--CTCTCAACTAGGCCAGCGGCTTAACTAGACCGACCTA---TAAA--CCG---GCC-TCTAAA-CCCGGTC-GGCTC-ACCGGCT-CT---AGACCCGGCCG----GCTCACCGGTTATA-AAC--CAGGCCGGGC--TCTAGACACG---------GCCGGGTAGCCGGCGACCCCTG-TGG---CAAAACTGCGCATGTC--CTT---GACC--CCAGCGTCCTAGATATTG-AACC------ACCC-ATCGGG
gi|6 : GAA-CTGGGCCTCTACAGATCC-CTGCAG-AAC------GAGC-T----CCG-GCC-AGGAAC-AAAGAA--GA-TTTTGCGGA-TCATTACCACCACCAC-------TAGGA-CGGGGATCG--TTAGAAC-CGCATTAATTGTGCTGAGGTAA-TGAGATGGG-AA-TC-TACCGAGCAGTTCC-TG-CTGAAGAAGCTATTGGCACGTTTCCCA-AGAACTGGGTATCACGTGGGCAAAAATCTA-GTAACagcgtttatac
gi|6 : ATT-ACGCTACTAACATCCTC--CGTGCTA-CACCT-TGCGGTTGTTCGGCCAAA------CAGGACATTTG-GTCGCatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatattacgctactaacatcctccgtgctacaccttgcggttgttcggccaaacaggacatttggtcgc
gi|7 : gaactgggcctctacagatccctgcagaacgagctccggccaggaacaaagaagattttgcggatcattaccaccaccactaggacggggatcgttagaaccgcattaattgtgctgaggtaatgagatgggaatctaccgagcagttcctgctgaagaagctattggcacgtttcccaagaactgggtatcacgtgggcaaaaatctagtaacatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatATGA-CGCG--AGAGG--AAATACAGGCAATA-----GAG-GAATGA------TTCACCAGTTCTA-GGA-AGAT-----TATGGATAGACG--AAGTA-TA-GTCTGGCGGAA--TAAAGTGTTA---GTACAGA---GATGCGTCGCGCATCGATTTA---CAGC--TGGA-C-G-ATCTAAAAAA--T--TGGGTGTTTTATGAGTTCAT-----GTATTGCGTCC---CC-AT---GGAAC-----GTAGGAAGGAATATTAC-TGGCC-GCCG-------TTTTTAG-GCGA---CATGT-A--TGAAAAAAGACC-T--CTGG-------------TATCAGTCTGGTTGTA-CAAGTGCTT-ATA-CG-TTATTGAACGGC-ACTGCTAA
gi|8 : gcCC-AGGCTTAGGATTTTTTTTCCCGGAGATCCCAGAATCAGAAGATGTAACA-GGGATGGAA-CTGGGTCTTTACAA--CC-CT-CAG-AAT------GAGCCT----CCG-GCC-ATAAAC-AAAGAA--GATTTT-GC-GA-TCATTTCCACGA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGA-GTAA-TGAGATTGGAAA-TCATACC--ACAG-TCC-T-ACTGAAGAAGC---TGG----------A-AAAACTG------AC-----C-----TCTA-A-AAACCTAGG-AAGGAA-TA-CACCCCAGATT-ACGCTACTAAC-----C--CGTGCTA-CAC-T-TGCGG------AC--AAtgaaagatttggg
gi|9 : gacCC-ATGACCCAAAGAATAGATTTT-GC-TACTCATTTCCACC--CACGTTAGGTTA-GA-C-GGGATAG--TC--AAC-AGAATTAA-TGTGTGGAGA-GA-TGAGATTGGAAA-CCATACA--AGAA-TCC-T-ACTGAAGAAGA---TGA----------A-GGAGCTG------AC---GGCAAAAAT--------CCCAAGG-ACGG-A-----ACT---------CGCCACTAAC-----C--CATGCTA-CAC-C-TGTGG------AG--AAATACTAGTAGGAC-ATTG-GT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CCCCCAAACTTGACCCAAGTTAATATATAACTTATTTGTTACCTGCGTCCGCCCGTTAGGTACTAG
Unaligned ( gi|18 ): GCATCCTAGATATTGAACCGGCCATCAGGACAGTTTATA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 2222 2222 1 222 11 1111 11 111 33333 1 333333 1 1 1 33333 1 11 1 11 2222222222222 222 222 22 1 22222 111 11111 11 22222 222 333333333 333333333333333333333 111 2222 1 1 444444444 1 1 222 2222 1 2222 77777777777777777 1 1 1 1 1 1 11 1 222 11 11 1 1111 1 222222222 1 1 22 1 11 111 1 333333333 1111 11 11 3333333 1 111111111 111 222222 3333 1 111 11 11 11 1 11 55555555555555555555555555555555555555555555555555555555555555555555555555555 222 1 3333333333 111111 1 3333333 111 11 6666666666666666666666666666666666666 11 3333333333333 11 11 111111111111111111111111111111111111111111111111111111111111111 33333333 11 1 11 1 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 11 1 2222 11 1 1 222 111111 555555555555 66666666666666666666666666666666666 22222 222 1 333333 222222 22 4444444 11 1 11 2222 2222222222222 11 22222 1 1 11 1 11 1 44444444444 1 11111 222222 1111 22222 2222222222222 1 111 22 1111 3333333333 33333333333 111 1 444444 33333333 111 3333333333333333333 11 22222 3333333 2222 1 1 2222222222222 1 2222 11 333 22 1 1 1 1 1 1 1 222 1 1 222 1 11 1 1 1 2 1 11 66666666666 1 1 1111 22222 000000000000000000000000000000000000000000000000000000000000000000000000 33333333 1 1 1 2222222222222 11 55555555555555555555555 111 11 222222 11 33333333333333333 2222 11 11 11 222222 1 1 111 888888888888888888888888888888 11 3333333333 1111111 444444444444444444444444444 111 66666666666666666666666666666666666 11 666666666666666666666666666666 66666666666666666666 22222 2222222 1111 2222 11 3333333 222 1 11 1
lowQualScore : 111 3333 3333 22 5 111 77 8888 6 88 555 33333 3 888888 88 3 3 3 33333 3 88 3 22 5555555555555 333 333 55 3 7 66666 999 88888 88 77777 888 333 333333333 777777777777777777777 1 333 7777 3 3 555555555 2 3 333 4444 7 3 2222 55555555555555555 1 3 3 3 3 3 7 3 1 88 1 5 222 1 88 1 66 5 5555 3 7 555555555 7 3 3 00 0 22 777 0 1 666666666 4444 33 88 2222222 0 3 888888888 55 777 0 22 3 444444 9 2 3333 0 444 33 6 88 55 2 00 99999999999999999999999999999999999999999999999999999999999999999999999999999 7 333 1 3 3333333333 888888 0 4 7777777 444 8 8 8 88 7777777777777777777777777777777777777 8 5 11 1111111111111 8 11 0 11 0 0 666666666666666666666666666666666666666666666666666666666666666 7777 0 11111111 33 0 11 66 0 1 2 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 88 3 7777 44 2 6 3 333 999999 222222222222 77777777777777777777777777777777777 22222 333 3 333333 666666 00 5555555 7 44 6 3 44 1111 9999999999999 44 22222 1 3 3 88 0 1 1 33 0 66666666666 333 0 8 3 22222 8 8 333333 7777 8 6 1 6 66666 3 6 6 7 6666666666666 6 6 6 99 99 6 6 3 6 3 3 6 111 0 8 8 55 0 4444 5555555555 8 3 33333333333 0 444 0 888888 2 3 8 88888888 8 000 1111111111111111111 0 11 8 6 7 6 33333 0 1111111 6 8888 1 3 3 6 7777777777777 3 3 6 8888 88 777 7 00 7 3 5 5 5 5 1 1 5 5 111 1 5 5 1 111 5 88 5 5 1 7 7 3 6 3 7 88 00000000000 3 3 9999 2 3 00000 0 8 11 99 8 777777777777777777777777777777777777777777777777777777777777777777777777 1 2 55555555 3 5 0 5 0 5 9999999999999 0 11 3 55555555555555555555555 444 6 66 1 6 333333 99 55555555555555555 0 2222 4 8 11 11 8 99 888888 0 0 3 666 3 3 999999999999999999999999999999 33 2222222222 0 8 0 7777777 888 000000000000000000000000000 444 999 8 8 8 99999999999999999999999999999999999 8 11 8 333333333333333333333333333333 66 5 88888888888888888888 55555 6 6 7777777 6666 3333 88 1111111 000 7 3 44 3 7 1
lowQualScore : ... .... .... .. . ... .. .... . .. ... ..... . ...... .. . . . ..... . .. . .. ............. ... ... .. . . ..... ... ..... .. ..... ... ... ......... ..................... . ... .... . . ......... . . ... .... . . .... ................. . . . . . . . . . .. . . ... . .. . .. . .... . . ......... . . . .. . .. ... . . ......... .... .. .. ....... . . ......... .. ... . .. . ...... . . .... . ... .. . .. .. . .. ............................................................................. . ... . . .......... ...... . . ....... ... . . . .. ..................................... . . .. ............. . .. . .. . . ............................................................... .... . ........ .. . .. .. . . . ............................................................................................... . .. . .... .. . . . ... ...... ............ ................................... ..... ... . ...... ...... .. ....... . .. . . .. .... ............. .. ..... . . . .. . . . .. . ........... ... . . . ..... . . ...... .... . . . . ..... . . . . ............. . . . .. .. . . . . . . . ... . . . .. . .... .......... . . ........... . ... . ...... . . . ........ . ... ................... . .. . . . . ..... . ....... . .... . . . . ............. . . . .... .. ... . .. . . . . . . . . . . ... . . . . ... . .. . . . . . . . . . .. ........... . . .... . . ..... . . .. .. . ........................................................................ . . ........ . . . . . . ............. . .. . ....................... ... . .. . . ...... .. ................. . .... . . .. .. . .. ...... . . . ... . . .............................. .. .......... . . . ....... ... ........................... ... ... . . . ................................... . .. . .............................. .. . .................... ..... . . ....... .... .... .. ....... ... . . .. . . .
lowQualScore : 000 0000 0000 00 5 000 55 0000 7 33 333 33333 3 333333 33 3 3 3 33333 3 33 3 77 7777777777777 333 333 33 3 3 77777 000 77777 33 77777 777 333 777777777 000000000000000000000 0 000 0000 3 3 333333333 0 3 333 3333 3 3 7777 33333333333333333 0 3 3 3 3 3 3 3 0 55 0 5 000 0 55 0 55 0 7777 3 3 777777777 3 3 3 77 0 55 555 0 2 555555555 2222 88 00 5555555 8 2 555555555 00 555 2 88 0 222222 8 5 0000 0 555 88 7 33 77 0 33 77777777777777777777777777777777777777777777777777777777777777777777777777777 3 333 0 3 9999999999 888888 0 2 2222222 000 0 0 0 66 2222222222222222222222222222222222222 0 0 00 8888888888888 0 00 8 00 8 8 222222222222222222222222222222222222222222222222222222222222222 2222 2 88888888 88 0 88 55 2 0 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 33 3 7777 77 0 7 3 333 000000 777777777777 33333333333333333333333333333333333 00000 333 3 333333 000000 77 7777777 3 00 7 3 77 7777 0000000000000 00 33333 0 3 3 33 0 2 0 22 0 00000000000 888 0 0 2 22222 0 0 000000 0000 0 7 5 7 22222 2 7 7 8 7777777777777 7 7 7 22 22 7 7 7 7 2 3 7 777 8 0 0 44 8 8888 0000000000 0 2 00000000000 8 222 0 000000 5 5 0 44444444 0 000 3333333333333333333 8 66 0 7 3 7 33333 7 7777777 7 3333 0 3 3 7 7777777777777 3 7 7 3333 33 777 3 77 3 3 5 0 0 0 0 0 0 0 000 0 0 0 0 000 0 00 0 5 0 3 3 3 7 3 3 33 77777777777 3 3 0000 5 2 00000 8 0 44 44 0 222222222222222222222222222222222222222222222222222222222222222222222222 0 5 88888888 2 5 0 0 8 6 6666666666666 8 66 8 00000000000000000000000 888 5 55 0 0 000000 00 88888888888888888 8 4444 6 0 00 00 0 00 888888 0 0 2 222 2 2 000000000000000000000000000000 88 5555555555 2 8 8 5555555 888 000000000000000000000000000 000 222 0 2 0 66666666666666666666666666666666666 0 00 8 000000000000000000000000000000 00 6 22222222222222222222 88888 7 7 0000000 7777 0000 00 0000000 555 3 3 77 3 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACCGCACAGTCGTACCGTGGANNACACGTGAGACTTGTGTAAGGCAGCGGATGA-CGCGCCAGCGG--AAATACAGG-AGTA-----GAG-GAATTA------TCNACCAGTG-TA-AGA-AGAT-----TATGT-TAGACG--AGGTA-TACGTCTGGGGGAA--TAAAGT-TTA---GTACAGA---GATGC-TCGC-CATCGATTAA---C-GC--CGGA-CCG-ATC--AAAAA--T--TGGCGGTTT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTNGGAAGGAATAT--C-TG-CC-GCCG-------TTTCTAG-GCGA---CATGT-AC-TGAAAAAAG-CC-T--CTGA-------------CACCAGTATAGTNTTA-CCAGT-TTT-ATA-CG-TTATTGAACGGC-ACTNCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGAAATTGTTTNGGTGCATAGCAGGCNGGATGTGGGAAAAACCGNTANAGTGATGCGTTTCCGGGGGACGAAGAG-CT-GAC-ATAA--TACATA-CAGCACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAATA--CCATGCACA---GCCCCTTTTTACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACAC--AAACATGAA--GTGGGCAGGCAGCCCTA----G----------------CTCGTTAAG-GCG-------AAATTGGCCACCATG--A---GACTCG---AGCC-GCGCACT---GGGAAAAANCTCAATT-GGCATCATTGC--A-GC----TGGC-A--C-GAGGC-CGGCA-A----CT---GGGAA-AAAA-CTCAA-TTGGCA-CCAT------CGCTGCCANGCTG-A------GGCA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACCC--AATTGGCACCAT-GNGCCAGT--GC-GCTG------------AGAGGACGCGTN-TGGC---AGC---CGANT-AGNCACTGGGGAAA---AAC--CC--ACTG-GCACNATG-CGAGNTGGGCA-CTG-AGCTAGC-CTGGATGG-AACTCT---ACGA-GC-ATANAAG--AA-GCAA-AGCCG--CTC--GGC-ACTCTA-T----CAC-TC-T---TCAC-ATC--GACT-TCA-A--CCTGACCTAGAGAGCACAT-GGCT---CAGAAAA--CAG-CTAGAAATTCGTGG-A-CA------AGAGCTCAGAA-----GAAA----GTGAACGA-TAACA--------TGG-T-A-CAGA---AA-AAGACT---GAGAATGCAA--C-A-AGATT-TCTTGAGCGAA---A---AGAATAGACG-GGGA-GTTACAG-G--AGGCTACTACATTG----ACAGCAGACTGA-AAGAAAGGCCAAGACTGAGGGTTNTTACCTA-GCCA-GAATCCTA--CAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGCAACG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GA-TTTTGC-GA-TCATTTCCACNA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TGACTGAAGAAGC---TGG----------A-AGAACTG------AC--GGGCAAAAATCTA-G-AACCCTAGG-AAGG-A-T--CACTCCAGATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AA-GCAACGTTTATCCGC----AGACCAGTA----AANA-AAGAT-TATCCCGCAG-ACCCCAGT--A-AGAA-ATCCGGC----CGATAAACC--AGCAGAA-CGAAACACAAACA-AAGGGATCCT-TGCTACACAGTGGCGGGNAAATTAGGNACTGGATCAGTGGACTGAGTCCGNAAGGAACAAGCGGAGATCGATGGAANGATGATTGGGCATCCCGCTACCTGGCCCAAAACCCGCTGTGAAGAGANGAGTACAAACCGTTAG-AGA-TGTG-GAATC--CCCGCACCTAA------C-GAAGAACC-GCC-AAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTG-AACTGTTTTTTTAT-GC----TG------AAC--TG-T--------TTAAA--CTAAGCTTGAACTGT-TTTTA-GCTGTTTAAAAACTGTTNTGCATTGTT-------TCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATGCACAGGAATA-CAC-AGGATTTAATACACNGGAA-TTNAC-GGATTTA--------ATACA-A-GGAATACACA-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-T-AACACGTTC-C--TA--AGTGTGC-TACA--TTTT------TGA-C-GTCATAATGC--CTCTCCAAGTGCGA-NTTCAAA--ACG------CAC---AAT--AGC-TT-CAC---CCTGTGCTAAAACTCG-A--CTCTAAACTAGGCCAGCGGC-T-AA-TAG-CCGACCTA---CGAC-TCCG---G-C-TCTAAA-CCCGGCCGGGCTC-ACCGG---CT---AGACCCG---G----GCTC--------TA-AAC--CCGGCCGNGC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAAA-----------C--CTC---GACC--CCAGCGTCCTAGCTATTGCAACC--GC---CC-AT-CGGGGCCAGACCGCCGCTTGACTCAATCAGAAGCCGCATTGCTTGACCTCATTTGCA-TAAAAAGTTGCACTCA-GTTGAACCTCCCTATNGAGGG
Reference ( family-3 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACCGCACAGTCGTACCGTGGANNACACGTGAGACTTGTGTAAGGCAGCGGATGA-CGCGCCAGCGG--AAATACAGG-AGTA-----GAG-GAATTA------TCNACCAGTG-TA-AGA-AGAT-----TATGT-TAGACG--AGGTA-TACGTCTGGGGGAA--TAAAGT-TTA---GTACAGA---GATGC-TCGC-CATCGATTAA---C-GC--CGGA-CCG-ATC--AAAAA--T--TGGCGGTTT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTNGGAAGGAATAT--C-TG-CC-GCCG-------TTTCTAG-GCGA---CATGT-AC-TGAAAAAAG-CC-T--CTGA-------------CACCAGTATAGTNTTA-CCAGT-TTT-ATA-CG-TTATTGAACGGC-ACTNCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGAAATTGTTTNGGTGCATAGCAGGCNGGATGTGGGAAAAACCGNTANAGTGATGCGTTTCCGGGGGACGAAGAG-CT-GAC-ATAA--TACATA-CAGCACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAATA--CCATGCACA---GCCCCTTTTTACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACAC--AAACATGAA--GTGGGCAGGCAGCCCTA----G----------------CTCGTTAAG-GCG-------AAATTGGCCACCATG--A---GACTCG---AGCC-GCGCACT---GGGAAAAANCTCAATT-GGCATCATTGC--A-GC----TGGC-A--C-GAGGC-CGGCA-A----CT---GGGAA-AAAA-CTCAA-TTGGCA-CCAT------CGCTGCCANGCTG--------GGCA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACCC--AATTGGCACCAT-GNGCCAGT--GC-GCTG------------AGAGGACGCGTN-TGGC---AGC---CGANT-AGNCACTGGGGAAA---AAC--CC--ACTG-GCACNATG-CGAGNTGGGCA-CTG-AGCTAGC-CTGGATGG-AACTCT---ACGA-GC-ATANAAG--AA-GCAA-AGCCG--CTC--GGC-ACTCTA-T----CAC-TC-T---TCAC-ATC--GACT-TCA-A--CCTGACCTAGAGAGCACAT-GGCT---CAGAAAA--CAG-CTAGAAATTCGTGG-A-CA------AGAGCTCAGAA-----GAAA----GTGAACGA-TAACA--------TGG-T-A-CAGA---AA-AAGACT---GAGAATGCAA--C-A-AGATT-TCTTGAGCGAA---A---AGAATAGACG-GGGA-GTTACAG-G--AGGCTACTACATTG----ACAGCAGACTGA-AAGAAAGGCCAAGACTGAGGGTTNTTACCTA-GCCA-GAATCCTA--CAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGCAACG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GATTTTTGC-GA-TCATTTCCACNA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TGACTGAAGAAGC---TGG----------A-AGAACTG------AC--GGGCAAAAATCTA-G-AACCCTAGG-AAGG-A-T--CACTCCAGATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AA-GCAACGTTTATCCGC----AGACCAGTA----AANA-AAGAT-TATCCCGCAG-ACCCCAGT--A-AGAA-ATCCGGC----CGATAAACC--AGCAGAA-CGAAACACAAACA-AAGGGATCCT-TGCTACACAGTGGCGGGNAAATTAGGNACTGGATCAGTGGACTGAGTCCGNAAGGAACAAGCGGAGATCGATGGAANGATGATTGGGCATCCCGCTACCTGGCCCAAAACCCGCTGTGAAGAGANGAGTACAAACCGTTAG-AGA-TGTG-GAATC--CCCGCACCTAA------C-GAAGAACC-GCC-AAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTG-AACTGTTTTTTTAT-GC----TG------AAC--TG-T--------TTAAACCTTAAGCTTGAACTGT-TTTTA-GCTGTTTAAAAACTGTTNTGCATTGTT-------TCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATGCACAGGAATA-CAC-AGGATTTAATACACNGGAA-TTNAC-GGATTTA--------ATACA-A-GGAATACACA-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-T-AACACGTTC-C--TA--AGTGTGC-TACA--TTTT------TGA-C-GTCATAATGC--CTCTCCAAGTGCGA-NTTCAAA--ACG------CA----AAT--AGC-TT-CAC---CCTGTGCTAAAACTCG-A--CTCTAAACTAGGCCAGCGGC-T-AA-TAG-CCGACCTA---CGAC-TCCG---G-C-TCTAAA-CCCGGCCGGGCTC-ACCGG---CT---AGACCCG---G----GCTC--------TA-AAC--CCGGCCGNGC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAAA-----------C--CTC---GACC--CCAGCGTCCTAGCTATTGCAACC--GC---CC-AT-CGGGGCCAGACCGCCGCTTGACTCAATCAGAAGCCGCATTGCTTGACCTCATTTGCA-TAAAAAGTTGCACTCA-GTTGAACCTCCCTATNGAGGG
gi|1 : TTCTTGT---CTGACCGCACAGTCAT----TGGATAACACG-GAGACTT-T-TAAG--AGCAGA----CGCGCCAACGG--ATAAACAGA-AGTA-----GAG-GAATTA------TCAACCAGTG-TA-AGA-AGAT-----TATGT-TAGACG--AGATGCTATATCTGGG-------AAAAT-TTA---GTACAGA---GATG--TCGC-CATCGATTAA---C-GC--TGGAGCCG-ATC--AAAAAATT--TGGTG--TT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTGGGAAAGA-TAT--T-TG-CC-GC-G-------TTT--AG-GCGA---CATGT-ACCTGAAAAAAA-CC-TTTCTAA-------------CA--AGTACACGATTA-CCAGT-TTTTATA-CG-T-ATTGAACGGC-ACTTCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAG--ATTGTTTTGG-GC-T-GCAGGCTGGATGTGGG--AAACCGGTAAAGTAATGCGTTTCCGGGAGA-GAAGAG-CTCGACAATAA--TACA------CACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGTATT-GAA--GCCGGACATTTTGTA-------AAAAAATAA--AAATA--CCAT-CACA---GCCCCTTTTTA-G-GGCCTACTTT-AAACAAAAT----ATGAGTG-ACACACACAAAAACAT-AA--GT--GCA--CTGCCCTA----G----------------TTCGTTAAG-GC---------AATTGGCCACCATGCCAGCTGACCTG---AGCC--CGCACT---GGGAAAAACCCTAATTGGGCATCATTGC--A-GC----TGGC-A--C-GAGGC-CAGC--A----CT---GGAAA-AAAAGCTCAATTTGGC--CCAC------CACTGCCAAGCTG--------CGCA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACC----ATTGGCACT----TGCCAGTAGAC-ACTG------------AGA--ACCATTT-TGGC----GC---TGAGTCAGGCACTGGGGAAA---AAC--CC--ATTG-GCACTGTG-CCAGCT-GGCACCTG-AGCCAGCACTGGAGAA-AATTTT---ACGG-GCTATAAAA---AG-GCAG-AGCC---CTC---GC-ACTC---T----CAC-TC-T---TCAC-ATC--GACT-TCA-GACCCTGACCT-GAGA--ACAT-GGCT---CAGAAAA--CAGCCTAGAAATTCGTGG-A-CA------AGAGCTCAGAAG----GAAA----GTGAATAA--AACA--------TGGCT-A-CAGA---AA-AAGACT---G-GAATGCAA--CAA-AGATT-TCTTGAGCGAA---A---AG-ATAGACA-GGGA-GCT-CAGCG--AGGCT--TACATGG----ACAGCAG-CTGA-AA-AAAGGCCAAGACTGAGAGTTTTTACCTACTCCACGAATCCTA--CAGACC-AGGCTTGGGATTTTTTT-CCCGGAG-TC---G---CAAAAGATGC-ACGCGGACTGGAA-CT-GGCCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GA--TTTGC-GA-TCATTACCACCA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGATAA-TGAGATTGG-AA-TCATACC--AC-G-TCCTTGCCTGAAGAAGC----GG----------A-A-AACTG------AC--GGGCAAAAATCTAGG-AACCCTAGG-AAGG-A-TTACACTCCAGATT-ACGCTA-TAAC-----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AAGGCAGCATTTATCCGC----AGACCAGTA----AAGA-AAGATGTAT-CCGCAG-A--CCAGT--A-AGAA-ATCGGGC----CGATAAACC--AGCAGAAGTAAAACACAAACA-AAGGGATCCTGTGCTACA-AGT-GC-GGTAAATTAGGCACT-GATCAGT-GACTG---TCGCAAGGAACAAGCGGAGATCGATGGAAGGATGATTGGG---CCCGCTACCTGGCTCAAAACCCG-TGTG-AGAGAAGAGTACAAACCGTTAGCAGATTGTGAGAATC--CCCGCACC--A------CTGAAGAACC-GCC-TAAAAGAAGAGAAGAAA-TGAGCCG-AAGTAAAAA-----CTTGAAACTGTTTTTTTAT-GC----TGTTTTAAAAC--TG-TTTTCATTGTTAAA----AAACTTGAACTGTATTTTATGCTGTTTAAAAACTGTTTTACATTGTT-------TCTTTAATAAACATGTAAAACTAAAAC-CTTGGTGTTAGTCTTTA-TATGCAGAGGAATACCACAAGGATTTTATACACTGGAATTTCAC-AGATTTATGCGATCGATACA-G-GGAATACACAGGGAATACAC-G------GATA-TTT-----ATT--G-C----GATCGA----------TT-C--TA--AGTGTGC-TACA--TTTT------TGA-CAGTCATAATGC--CTC-CCAAGTGCGATTTTCAGA------------A----AAT--AGCTTT-CAC---CCTTTTCCACAACTCA-A--AGCGAAAGTAGACCA-CGGC---AA-TAG-CCAACCTA---TAGC-TCCG---G-CATCTAAA-CCCGGCCATGCTT-A-------TT---A-ACCCG---G----ACTC--------TA-AAC--CCGGCCG-GC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAAA--------------CTT---GACC--C---CGTCCTAGCTATTGCAACC--GC---CCAAT-CGAGGCCAGACCACCGCTTGACTCAATCAGAAGCCGCATTGCTTGACCTCATTTGCAGTAAAAAGT--CACTCA-GTTGAACCTCCCTATGGAGGG
gi|10 : taatgaaaggcttcgaacacctgtatttataggtgaaaaaaaggtaatgcattcaaccgtgtctgtgcatcacgtgatcaacccccttgtgcgttagtgtgcgttagcattcaTTACCTA-GCCA-GAATATGT--CAAACCCAGCCTTAGGAGTTTTTT-CCCGGAG-TC---A---CA--ATATGCAACG-GAACTGGAA-CTAGGCCTCTACAA--CA-CG-AAG-AATGCATCGGAACCTGAGGCCGCGCCAATGAGC-AAAGAA--GA-TTTTGC-GA-TCATTTCCACG------------TA-GA-C-GGGATCA--TG--AAC-AGAATTAA-TGTGCTG-GGTGA-TGAAATTGG-AACTCATACC--Agggctata
gi|11 : G--AAA------CAGGAAAATCATGTCTTCGGATTGCTCCCCAGACAC-GCGAGATTAATTCGCCATAAGACCAGTAACACAATA-GAGAT-TATCACGCAATACCCCGTT--A-AGAA-ATTCGGCATCGCAGTAATTCGAAACTGAATCGAAAC-TAAAC--AAGGACTCCT-g
gi|12 : GATTTTACTG------AAT--TTTTTACAA-TTAG-C----GATCGAAT-AACACATTT-CCGTA--AGTGTGCTTACA--
gi|13 : gagatatacacttactgcga-A--CTCTAAACTAGGC--------T-AA--AG-C-GCTCTA---C-AC--CCG---G-T-TATAAA-CCCGACCGGGCTC-ACCGGGCTTT---AAACCTG---GCCGTGCTA--------TA-AAC--CCGGCTGGAC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAaactatatttcattacttaattgaaacgattttccatacatgctctacaaaccaaaaacc
gi|14 : cctgcGA-CTTACACC-TGTATAT---AGAAG-AAC-------CTGCGT-TT-GAA--GCCGGACATTTT-TA-------AATAAA-AA--AAAAA--CCATGCACA---GCC--------------CTACTTTAAAACAAAAT----ATGAGTG-AC--ACAC--
gi|16 : -----CTTG-AACTG--TTTTCAT-GCTTATTG------AAC--TG-T--------TTAAA
gi|17 : gggactgtgTTTATTATGCACAGGAATA-CAC-AGGATTTAAAACACTGGacattgtgc
gi|2 : AGAGTCG-GAC-ATAA--TA-ATA-CAGCACATTTACTCCCA-GATC-AT--GA-CTTACAC--TATATCT---AGAGA-ATC-------T-GCGT-T--GAA--GCCGGACATTT-GTA-------AA--AATAA--A--CA--CCATG-ACA---GGCCTTTTTGACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACAC--ATACATGAA--GTGGGCAAGCAG--CTA----G----------------CT--TTGAGAGCG-------A----------CATA--A---GATTCGATAAGCTAGTGC-CT---GGGAAAAAACTCAATT-GGCACCATGCC--A-GCAGTATGGC-AACT-GAGAC-CAGC--A----CT---GGGAAGAAAA-CTCAA-TTGGCA-CCATGGGATGCGCTGCCACCTTGAAAAAAAAGACG-CGTCATGG-CCC--CAA--CCGAATGCCTTT-GGGAA--AAAACCAGAATTGGCACCATCGAGTTAG---GCAACTG-------------GAGGTCGCGGA-TGGT---AACTCGCGACT-AGA-----GGTAAATGCAATGGCC--GCTG-GCACACTA-CGA
gi|2 : gagc----CT---GGGAA-AAAA-CTCAA-TTGGCA-CCAT----------GCCA-GCAGTAT-----GGCAAC----TGA-GAC--CAG--C-----AC---T-GGGAAGAAAACTC--AATTGGCACCAT-GGG---AT--GC-GCTGCCACCTTGAAAAAAAAGACGCGTCATGGCCCCAAC---CGAAT--GCCTTTGGGAAAA---AAC--CAGAATTG-GCACCAT--CGAGTTAGGCAACTGGAGGTCGC---GGATGGTAACTC----GCGA--C--TAGAGGTAAATGCAATGGCCG--CT---GGC-ACACTA-CGATGCAC-TCCT---TCACTATC--GACT-TCAGA--CCTGACC-AGAGAACA-AT-GGCT---CAGAACA--C-G-CTAGAATTGCGTGG-AACA----------CTCAGAA------AAA----GTGAA----TAACA--------TGG-T-ATCAGA---AAGAAGAC----GAGAATGCAA--C-A-AGATT--CTTGAGCGAAGTAA---AGAATAGACA-AG-A-GT-ACAG-G--AGGCTAC---ATTA----ACAGCA-ACTGA-CGG----GCCCAGACTGAAGGTTATTTCCTA-GCCA-GAATCCTAGGTAGACC-AGGCTTTGGAATTCTT--CCCGGAG-TC---AT--CA--AGAT-TAACG-GGACTGGAAACTGGGCCACTACAA--ATGCT-CAGGAAT------CAACCT----CCG-GC--ATGACA-AAAGAA----TTTTGGC-GA-TCATT-ACACGAACAC-------TA-GATC-GGAATTGATTT--AACACGCATTAA-TGTGCTGAG-TAAGTGAGAT-GG-AA-TCATAC---ACAG-TCC-TG-CTGA-GAAGC---TGG----------ATAGAACTGT-----AC--GGGAAAAAATCTA-G-AACCTTAGGGAAGGCACT--CACTCCTGATTCACGCTACTAATA----CGGCGTGCTAACAC-TCTGCGG------TG--AA-------C--GAC--TTG-GTCGC-GGAT-GCCC---AGA-AA---AACGATTATC-------AGACCA-TA----AGAACAGGAT-TATCCCGCAG-ACT--AGTTGACAGAATATCTG-C----CGATTAACC--AGCAGA---GAAAAACAATCAGAAGGGA-CCT-TGC-ACACAGTGGCGGGGAAATTAGAAACTGGATCAGTGGACTGAGTCCGGAAG-AACAAGCGGAGATCGATG-AATAATGATTGGACATCCCG-TACCTGGCC--AAACCTGCTGTGAAGAGACGAG---AAAACGT-AG-AGAGTGTG-GA-TC--CCCGCACCTA-------C-TAAGAACCCGCT-AAAAAGAAGC-AA-AAACTGAGCCGAAAGTAAAAC-----CTTG-AACTGTTTTTTTATAGC----C--------ACGGTGGT--------TTAAGCCCTTAGGGTGAG-----------GCTGTTTTA----TGTCTTG----GTG-------TGTTTA-TAAACATGTAAGACTTAGATACTTGGTGTTAGTCTTTATTATGCA-------------AGAATT-AA-GCACAGGAA-TGAACTGGATTTC---------TGCG-ACGGCATA-ACA-----TTCGCTAAAGTGTGATCATTT-------T--GAC----G-TC-A-T-AGCATGCTCTC--TGGCAGTGT-C-CAGA--TTTCAGAAAATGAGC-TTCA----GC--CTTTCCA----CGA-ACTCAAA--ACAGTAGACCACGGCAAT--AGC----CAA---CTTAT----AAAC-CG-AAACTCTAAACCCGGCTCGGGGC-TCAA-CGG-GCAA--TAAAGCGAC-GCCGAGTG-C-TATAAA-CCCGGC--GGCTCGACCGG---CTCACAGGCCGA---T----GCTA--------TATAACTTCAGGCCGTGC--T--------ATAAGAACGCGC-------CGGGTCACTC------GGG----------------C--CTCTAAAACC--C--GCGGC-TGGCCGGTGCTACCCGGCGAACC-CTGCTGGGTCAAACTGC----TGAC--AATCA-------CAT-----GACCTC-TTTGCA-TACAAAGTTGCACTCAGGTTGAACCtgcactccttcactatcgacttcagacctgaccagagaacaatggctcagaacacgctagaattgcgtggaacactcagaaaaagtgaataacatggtatcagaaagaagacgagaatgcaacaagattcttgagcgaagtaaagaatagacaagagtacaggaggctacattaacagcaactgacgggcccagactgaaggttatttcctagccagaatcctaggtagaccaggctttggaattcttcccggagtcatcaagattaacgggactggaaactgggccactacaaatgctcaggaatcaacctccggcatgacaaaagaattttggcgatcattacacgaacactagatcggaattgatttaacacgcattaatgtgctgagtaagtgagatggaatcatacacagtcctgctgagaagctggatagaactgtacgggaaaaaatctagaaccttagggaaggcactcactcctgattcacgctactaatacggcgtgctaacactctgcggtgaacgacttggtcgcggatgcccagaaaaacgattatcagaccataagaacaggattatcccgcagactagttgacagaatatctgccgattaaccagcagagaaaaacaatcagaagggaccttgcacacagtggcggggaaattagaaactggatcagtggactgagtccggaagaacaagcggagatcgatgaataatgattggacatcccgtacctggccaaacctgctgtgaagagacgagaaaacgtagagagtgtggatccccgcacctactaagaacccgctaaaaagaagcaaaaactgagccgaaagtaaaaccttgaactgtttttttatagccacggtggtttaagcccttagggtgaggctgttttatgtcttggtgtgtttataaacatgtaagacttagatacttggtgttagtctttattatgcaagaattaagcacaggaatgaactggatttctgcgacggcataacattcgctaaagtgtgatcattttgacgtcatagcatgctctctggcagtgtccagatttcagaaaatgagcttcagcctttccacgaactcaaaacagtagaccacggcaatagccaacttataaaccgaaactctaaacccggctcggggctcaacgggcaataaagcgacgccgagtgctataaacccggcggctcgaccggctcacaggccgatgctatataacttcaggccgtgctataagaacgcgccgggtcactcgggcctctaaaacccgcggctggccggtgctacccggcgaaccctgctgggtcaaactgctgacaatcacatgacctctttgcatacaaagttgcactcaggttgaaccacgaggacggcgcgtttagtatact
gi|3 : gagcagagtcggacataataatacagcacatttactcccagatcatgacttacactatatctagagaatctgcgttgaagccggacatttgtaaaaataaacaccatgacaggcctttttgacggggctactttaaaacaaaataatgagtgaccgacacatacatgaagtgggcaagcagctagctttgagagcgacataagattcgataagctagtgcTTCTTGTAACCCGACC----AGTTGTACCGTGGAATACACGTGAGATTTGTGTAAGGCAGCGGATGATCGCTCCAGCGGGAAAGTACA-G-AGCAATTTCGGGCGAATTACTTTGTTCT-TCAGTG-TATAGATAGATTTTTCTGTCT-TAGACACTGGGTA-TACATCTGAGGGAAACTA---T-TTAATGGTACATAATTGATGT-TCGC-CATCGA--AATTTC-GCCTCGGA-CCATATC--AAAAA--TCGTGGCGGTTT---GATT--ATTCTTAGTATTGCGTCCCATCTTATTTCG-AACTCGTAGTTGGAAG--ATAT--CTTG-CCTGCTGATTTGTTTTTCTAGAGAGAACCCATGTAAC-TG--AAAAG-TCGT--CTGATGATAACCGTATCCACTAGTATAGTCTTAGCCAGT-TAT-ATAGTGTTTAATGAACGGCTACTACAAacgaggacggcgcgtttagtatact
gi|3 : TATGGAGAAATTGTTTGAGTGCATAGCAGGCAGGATGTGGGAAAAACCGTTAC-GTGATGCGTTTTCAGGGGACGAAGAG-CT-CAC-A-AATTTACCTAGCAGCACA-TACATCACACGAACTATATGAGCTTACACCGTGTTTCTATCAGAAGCAGCAGCCTATC-ACAT-TTAGAAGTGCTGACCAGTTGCTACTCAACTAGCATATAATTAGGTAGTCTATGCACAAGCGTCCCTTTTTATATGTGCTACTTTTAAA-AAAATGGAAATTTATATACCG---C--AAAGTCGGACTGTAAGCAGGCAGCTCTGTCACGGATAACACCCATTGCTCTCGTTAAGTGCATCCGTCCAAATTGGCCACT-----A---GACTCG--------GCATACTAGAGGTAGAACTCTCAATT-GGCATCCATGCCTACGCT---TGGC-A--CTGAAGC-CTACA-GATCCCT---CGGAA-AAAA-CTCAA-TTGGC--CCAT-------G--GCCAGTCTG--------GAC--------GA-G-C--CAGT-C-----AC---T-GGGGA--AA--CC--ACTGTGCACAAT-Gtgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaattggccactagactcggcatactagaggtagaactctcaattggcatccatgcctacgcttggcactgaagcctacagatccctcggaaaaaactcaattggcccatggccagtctggacgagccagtcactggggaaaccactgtgcacaatgtcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|3 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagc----TGGCCA--C-TAGACTCGGCATA----CTAGAGGTAG-AACT-CTCAA-TTGGCATCCAT-------GC--CTACGCTT--------GGCA-C----TGAAGCCTACAGATC-----CC---TCGGAAA--AAACTC--AATTGGC-CCAT-G-GCCAGT------CTG----------------GACG------------AGC---C-----AGTCACTGGGGAAA--------CC--ACTGTGCACAATGTCAAGATGGGCA-GT----CTACCTCTGGCT------TCTCAAATGAAGC-AGATAAG--AA-GCAA-AATCGAGCTCTGGGCGACTCTAAT----CAAATC-GGGGTCAC-ATCCTGACTATCA-A--CCTGACCTAGAGAGCACATGGGCTGCGTAGAAACTTCAG-CTAGAAATTCGTGGTA-AAGTATGCAGAGCTTAGAGTACACGAAAACACGTGGACGACTACCATTCATTTGTGG-TAA-CAGATACAA-TAGTCTCGAAAAAATGCAAACC-ACAGATTGTCTTGAGCGCA---CGTTATAATGTACGCGGGAGGTTACAG-GCCAGGTTACTATTTTGTATCACAGCAGACTGATAAGAAAGGCAAGAATTGAGtcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|4 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaatGAGTACAAACCGTTAG-AGA-TGTG-GAATCTGCCCGTACCTAAACAAAGT-GAAGAACC-GCCTAAAAAGAAGA-A-GAAACTTAGCCGAAAGTAAAAA-----CG-G-GACTGTGCTTT----AG----TG------AAC--TG-T--------TT-----TTATGCTT-AACTGT-TTTTA----------AAAC-ATTGTGCATTGTTCTTGTTTTCCTTAATAAACATGTAAA-CTTAAAC-CTTG-TGTTATTCTT----------------------GGGATTTA-------------TTAT-GGATTTA--------ATACACA-GGAATACACA-AAATTTCACAG------GAT--TTT-----A-T--G-CCTTGGATCGA-T--ACACATTC-C--TA--AGTGTGC-TACATTTTTT------TGA-C-GTCATAATGCTTTTCTCCAAGTACAG-C--CAAATGACGT-----CAC---AATAGAGC-TCGCGCT--CCTGTGCTAAAACCTGCA--CTCTAAACTAGCCCAGCGGC---AA-TA---CACTCTA---CGCCATAC----G-C-TCTGAACCCCGGCCGGGCCT-ACCGG---C--------------------CTC--------TA-AAC--TCACCCGTGCTAT--------A---------GC-------CCGGACACCCCTGCAGGGGTCAAA-----------TCGCTT---GACCAATCAGCAT
gi|4 : aTTGACCTCATTTGCA-TAAAAAG-TGCACTCA-GTTG-ACCTCCCTATCGAGGGtgacctcatttgcataaaaagtgcactcagttgacctccctatcgaggg
gi|5 : agagtacaaaccgttagagatgtggaatctgcccgtacctaaacaaagtgaagaaccgcctaaaaagaagaagaaacttagccgaaagtaaaaacgggactgtgctttagtgaactgtttttatgcttaactgtttttaaaacattgtgcattgttcttgttttccttaataaacatgtaaacttaaaccttgtgttattcttgggatttattatggatttaatacacaggaatacacaaaatttcacaggattttatgccttggatcgatacacattcctaagtgtgctacatttttttgacgtcataatgcttttctccaagtacagccaaatgacgtcacaatagagctcgcgctcctgtgctaaaacctgcactctaaactagcccagcggcaatacactctacgccatacgctctgaaccccggccgggcctaccggcctctaaactcacccgtgctatagcccggacacccctgcaggggtcaaatcgcttgaccaatcagcaAAGAAGA-A-GAAACTGAGCCGAAAGTAGAGATGGTGCTTG-AACTGTTTTT--AT-GC----TG------AAC--TG-T--------TTAAA-----------AACTG-----------ATTTAAAAAC-ATTGTGCATTGTT--------CTTTAATAAACATGTAAA-CTTAAAC-CTTG-TGTTAGTCTTTATTATGCACAGGAATA-CAC-AGGATTTAATACAGAGGAA-T--------------------ACACA-A-GAATTTTACT-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-TAAACACATTC-C--TA--AGTGTGC-TACAG-TTTT------TGA-C-GTCATAATG---CTCTCCAAG-------TCCAAA--AC-------CG----AAT--GAC-TT-CACAATCCTGTGCTAAACCTGC-A--CTCTCAACTAGGCCAGCGGCTT-AACTAGACCGACCTA---TAAA--CCG---GCC-TCTAAA-CCCGGTC-GGCTC-ACCGGCT-CT---AGACCCGGCCG----GCTCACCGGTTATA-AAC--CAGGCCGGGC--TCTAGACACG---------GCCGGGTAGCCGGCGACCCCTG-TGG---CAAAACTGCGCATGTC--CTT---GACC--CCAGCGTCCTAGATATTG-AACC--AC---CC-AT-CGGG
gi|6 : GAA-CTGGGCCTCTACAGATCC-CTGCAG-AAC------GAGC-T----CCG-GCC-AGGAAC-AAAGAA--GA-TTTTGCGGA-TCATTACCACCACCAC-------TAGGA-CGGGGATCG--TTAGAAC-CGCATTAATTGTGCTGAGGTAA-TGAGATGGG-AA-TC-TACCGAGCAGTTCC-TG-CTGAAGAAGCTATTGGCACGTTTCCCA-AGAACTGGGTATCACGTGGGCAAAAATCTA-GTAACagcgtttatac
gi|6 : ATT-ACGCTACTAACATCCTC--CGTGCTA-CACCT-TGCGGTTGTTCGGCCAAA------CAGGACATTTG-GTCGCatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatattacgctactaacatcctccgtgctacaccttgcggttgttcggccaaacaggacatttggtcgc
gi|7 : gaactgggcctctacagatccctgcagaacgagctccggccaggaacaaagaagattttgcggatcattaccaccaccactaggacggggatcgttagaaccgcattaattgtgctgaggtaatgagatgggaatctaccgagcagttcctgctgaagaagctattggcacgtttcccaagaactgggtatcacgtgggcaaaaatctagtaacatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatATGA-CGCG--AGAGG--AAATACAGGCAATA-----GAG-GAATGA------TTCACCAGTTCTA-GGA-AGAT-----TATGGATAGACG--AAGTA-TA-GTCTGGCGGAA--TAAAGTGTTA---GTACAGA---GATGCGTCGCGCATCGATTTA---CAGC--TGGA-C-G-ATCTAAAAAA--T--TGGGTGTTTTATGAGTTCAT-----GTATTGCGTCC---CC-AT---GGAAC-----GTAGGAAGGAATATTAC-TGGCC-GCCG-------TTTTTAG-GCGA---CATGT-A--TGAAAAAAGACC-T--CTGG-------------TATCAGTCTGGTTGTA-CAAGTGCTT-ATA-CG-TTATTGAACGGC-ACTGCTAA
gi|8 : gcCC-AGGCTTAGGATTTTTTTTCCCGGAGATCCCAGAATCAGAAGATGTAACA-GGGATGGAA-CTGGGTCTTTACAA--CC-CT-CAG-AAT------GAGCCT----CCG-GCC-ATAAAC-AAAGAA--GA-TTTTGC-GA-TCATTTCCACGA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGA-GTAA-TGAGATTGGAAA-TCATACC--ACAG-TCC-T-ACTGAAGAAGC---TGG----------A-AAAACTG------AC-----C-----TCTA-A-AAACCTAGG-AAGGAA-TA-CACCCCAGATT-ACGCTACTAAC-----C--CGTGCTA-CAC-T-TGCGG------AC--AAtgaaagatttggg
gi|9 : gacCC-ATGACCCAAAGAATAGATTTT-GC-TACTCATTTCCACC--CACGTTAGGTTA-GA-C-GGGATAG--TC--AAC-AGAATTAA-TGTGTGGAGA-GA-TGAGATTGGAAA-CCATACA--AGAA-TCC-T-ACTGAAGAAGA---TGA----------A-GGAGCTG------AC---GGCAAAAAT--------CCCAAGG-ACGG-A-----ACT---------CGCCACTAAC-----C--CATGCTA-CAC-C-TGTGG------AG--AAATACTAGTAGGAC-ATTG-GT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CCCCCAAACTTGACCCAAGTTAATATATAACTTATTTGTTACCTGCGTCCGCCCGTTAGGTACTAG
Unaligned ( gi|18 ): GCATCCTAGATATTGAACCGGCCATCAGGACAGTTTATA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 2222 2222 1 222 11 1111 11 22 33333 1 333333 1 1 1 33333 1 11 1 11 2222222222222 222 222 22 1 22222 111 11111 11 22222 222 333333333 333333333333333333333 111 2222 1 1 444444444 1 1 222 2222 1 2222 77777777777777777 1 1 1 1 1 1 11 1 222 11 11 1 1111 2222222222222 1 1 22 1 11 111 1 333333333 1111 11 11 3333333 1 111111111 111 222222 22222 1 111 2222222222 1 1 11 55555555555555555555555555555555555555555555555555555555555555555555555555555 222 1 3333333333 111111 1 3333333 111 11 888888888888888888888888888888888888888 11 3333333333333 11 11 111111111111111111111111111111111111111111111111111111111111111 33333333 11 1 11 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 11 1 2222 11 1 1 222 11 1 555555555555 666666666666666666666666666666666666 22222 222 1 333333 11 111 22 4444444 11 1 11 2222 2222222222222 11 22222 1 1 11 1 11 1 44444444444 1 11111 222222 1111 2222222222222 1 111 22 1111 3333333333 33333333333 111 1 444444 33333333 111 3333333333333333333 11 22222 3333333 2222 1 1 2222222222222 1 2222 11 333 22 1 1 1 1 1 1 1 222 1 1 222 1 11 1 1 1 2 1 11 66666666666 1 1 1111 22222 99999999999999999999999999999999999999999999999999999999999999999999999 333333333 1 2222222222222 11 55555555555555555555555 111 11 222222 11 33333333333333333 2222 11 11 11 222222 1 1 111 888888888888888888888888888888 11 3333333333 1111111 444444444444444444444444444 111 55555555555555555555555555555555555 666666666666666666666666666666 11111111 66666666666666666666666666666 11 11 44444444444444444 1 333 2 666666666666666 1 11 1
lowQualScore : 111 3333 3333 22 5 111 77 8888 6 88 55 33333 3 888888 88 3 3 3 33333 3 88 3 22 5555555555555 333 333 55 3 7 66666 999 88888 88 77777 888 333 333333333 777777777777777777777 1 333 7777 3 3 555555555 2 3 333 4444 7 3 2222 55555555555555555 1 3 3 3 3 3 7 3 1 88 1 5 222 1 88 1 66 5 5555 8888888888888 7 3 3 00 0 22 777 0 1 666666666 4444 33 88 2222222 0 3 888888888 55 777 0 22 3 444444 55 44444 0 444 4444444444 2 2 00 99999999999999999999999999999999999999999999999999999999999999999999999999999 7 333 1 3 3333333333 888888 0 4 7777777 444 8 8 8 88 444444444444444444444444444444444444444 8 5 11 1111111111111 8 11 0 11 0 0 666666666666666666666666666666666666666666666666666666666666666 7777 0 11111111 33 0 11 66 0 1 6 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 88 3 7777 44 2 6 3 333 88 7 3 222222222222 777777777777777777777777777777777777 22222 333 3 333333 88 777 00 5555555 7 44 6 3 44 1111 9999999999999 44 22222 1 3 3 88 0 1 1 33 0 66666666666 2 3 0 8 22222 8 8 333333 7777 8 6 1 6 99 6 6 6 7 6666666666666 6 6 6 99 99 6 6 3 6 3 3 6 111 0 8 8 55 0 4444 5555555555 8 3 33333333333 0 444 0 888888 2 3 8 88888888 8 000 1111111111111111111 0 11 8 6 7 6 33333 0 1111111 6 8888 1 3 3 6 7777777777777 3 3 6 8888 88 777 7 00 7 3 5 5 5 5 1 1 5 5 111 1 5 5 1 111 5 88 5 5 1 7 7 3 6 3 7 88 00000000000 3 3 9999 2 3 00000 0 8 11 0 3 8 88888888888888888888888888888888888888888888888888888888888888888888888 1 2 222222222 3 3 3 0 55 0 5 9999999999999 0 11 3 55555555555555555555555 444 6 66 1 6 333333 99 55555555555555555 0 2222 4 8 11 11 8 99 888888 0 0 3 666 3 3 444444444444444444444444444444 33 2222222222 0 8 0 7777777 888 000000000000000000000000000 444 999 8 8 8 88888888888888888888888888888888888 6 99 6 7 555555555555555555555555555555 6 33333333 00000000000000000000000000000 11 0 22 00000000000000000 0 0 0 666 3 222222222222222 7 3 44 3 7 1
lowQualScore : ... .... .... .. . ... .. .... . .. .. ..... . ...... .. . . . ..... . .. . .. ............. ... ... .. . . ..... ... ..... .. ..... ... ... ......... ..................... . ... .... . . ......... . . ... .... . . .... ................. . . . . . . . . . .. . . ... . .. . .. . .... ............. . . . .. . .. ... . . ......... .... .. .. ....... . . ......... .. ... . .. . ...... .. ..... . ... .......... . . .. ............................................................................. . ... . . .......... ...... . . ....... ... . . . .. ....................................... . . .. ............. . .. . .. . . ............................................................... .... . ........ .. . .. .. . . . ................................................................................................ . .. . .... .. . . . ... .. . . ............ .................................... ..... ... . ...... .. ... .. ....... . .. . . .. .... ............. .. ..... . . . .. . . . .. . ........... . . . . ..... . . ...... .... . . . . .. . . . . ............. . . . .. .. . . . . . . . ... . . . .. . .... .......... . . ........... . ... . ...... . . . ........ . ... ................... . .. . . . . ..... . ....... . .... . . . . ............. . . . .... .. ... . .. . . . . . . . . . . ... . . . . ... . .. . . . . . . . . . .. ........... . . .... . . ..... . . .. . . . ....................................................................... . . ......... . . . . .. . . ............. . .. . ....................... ... . .. . . ...... .. ................. . .... . . .. .. . .. ...... . . . ... . . .............................. .. .......... . . . ....... ... ........................... ... ... . . . ................................... . .. . . .............................. . ........ ............................. .. . .. ................. . . . ... . ............... . . .. . . .
lowQualScore : 000 0000 0000 00 5 000 55 0000 7 33 33 33333 3 333333 33 3 3 3 33333 3 33 3 77 7777777777777 333 333 33 3 3 77777 000 77777 33 77777 777 333 777777777 000000000000000000000 0 000 0000 3 3 333333333 0 3 333 3333 3 3 7777 33333333333333333 0 3 3 3 3 3 3 3 0 55 0 5 000 0 55 0 55 0 7777 3333333333333 3 3 3 77 0 55 555 0 2 555555555 2222 88 00 5555555 8 2 555555555 00 555 2 88 0 222222 88 00000 0 555 3333333333 0 0 33 77777777777777777777777777777777777777777777777777777777777777777777777777777 3 333 0 3 9999999999 888888 0 2 2222222 000 0 0 0 66 888888888888888888888888888888888888888 0 0 00 8888888888888 0 00 8 00 8 8 222222222222222222222222222222222222222222222222222222222222222 2222 2 88888888 88 0 88 55 2 0 7 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 33 3 7777 77 0 7 3 333 33 3 3 777777777777 333333333333333333333333333333333333 00000 333 3 333333 33 777 77 7777777 3 00 7 3 77 7777 0000000000000 00 33333 0 3 3 33 0 2 0 22 0 00000000000 5 2 0 0 22222 0 0 000000 0000 0 7 5 7 22 7 7 7 8 7777777777777 7 7 7 22 22 7 7 7 7 2 3 7 777 8 0 0 44 8 8888 0000000000 0 2 00000000000 8 222 0 000000 5 5 0 44444444 0 000 3333333333333333333 8 66 0 7 3 7 33333 7 7777777 7 3333 0 3 3 7 7777777777777 3 7 7 3333 33 777 3 77 3 3 5 0 0 0 0 0 0 0 000 0 0 0 0 000 0 00 0 5 0 3 3 3 7 3 3 33 77777777777 3 3 0000 5 2 00000 8 0 44 8 8 0 55555555555555555555555555555555555555555555555555555555555555555555555 0 5 888888888 2 2 2 0 00 8 6 6666666666666 8 66 8 00000000000000000000000 888 5 55 0 0 000000 00 88888888888888888 8 4444 6 0 00 00 0 00 888888 0 0 2 222 2 2 000000000000000000000000000000 88 5555555555 2 8 8 5555555 888 000000000000000000000000000 000 222 0 2 0 99999999999999999999999999999999999 7 22 7 5 333333333333333333333333333333 7 00000000 66666666666666666666666666666 22 8 22 55555555555555555 0 7 7 777 7 333333333333333 3 3 77 3 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACCGCACAGTCGTACCGTGGANNACACGTGAGACTTGTGTAAGGCAGCGGATGA-CGCGCCAGCGGAAA--TACAGG-AGTA-----GAG-GAATTA------TCNACCAGTG-TA-AGA-AGATT-----ATGT-TAGACG--AGGTA-TACGTCTGGGGGAA--TAAAGT-TTA---GTACAGA---GATGC-TCGC-CATCGATTAA---C-GC--CGGA-CCG-ATC--AAAAA--T--TGGCGGTTT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTNGGAAGGAATAT--C-TG-CC-GCCG-------TTTCTAG-GCGA---CATGT-AC-TGAAAAAAG-CC-T--CTGA-------------CACCAGTATAGTNTTA-CCAGT-TTT-ATA-CG-TTATTGAACGGC-ACTNCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGAAATTGTTTNGGTGCATAGCAGGCNGGATGTGGGAAAAACCGNTANAGTGATGCGTTTCCGGGGGACGAAGAG-CT-GACA-TAA--TACATA-CAGCACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAATA--CCATGCACA---GCCCCTTTTTACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACACAAA--CATGAA--GTGGGCAGGCAGCCCTA----G----------------CTCGTTAAG-GCG-------AAATTGGCCACCATG--AG---ACTCG---AGCC-GCGCACT---GGGAAAAANCTCAATTGG-CATCATTGC--A-GC----TGGC-A--C-GAGGC-CGGCA-A----CT---GGGAA-AAAA-CTCAATT-GGCA-CCAT------CGCTGCCANGC--TG--------GGCA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACCC--AATTGGCACCAT-GNGCCAGTG--C-GCTG------------AGAGGACGCGTN-TGGC---AGC---CGANT-AGNCACTGGGGAAA---AAC--CC--ACTG-GCACNATG-CGAGNTGGGCA-C-TG-AGCTAGC-CTGGATGG-AACTCT---ACGA-GC-ATANAAG--AA-GCAA-AGCCG--CTC--GGC-ACTCTA-C----CAC-TC-T---TCAC-ATC--GACT-TCA-A--CCTGACCTAGAGAGCACAT-GGCT---CAGAAAA--CAGC-TAGAAATTCGTGG-A-CA------AGAGCTCAGAA-----G-AAA----GTGAACGA-TAACA--------TGG-T-A-CAGA---AA-AAGACT---GAGAATGCAA--CA-A-GATT-TCTTGAGCGAA---A---AGAATAGACG-GGGA-GTTACAG-G--AGGCTACTACATTG----ACAGCAGACTGA-AAGAAAGGCCAAGACTGAGGGTTNTTACCTAG-CCA-GAATCCTA--CAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGCAACG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GATTTTG-C-GA-TCATTTCCACNA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TGACTGAAGAAGC---TGG----------A-AGAACTG------AC--GGGCAAAAATCTA-G-AACCCTAGG-AAGG-A-T--CACTCCAGATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AA-GCAACGTTTATCCGC----AGACCAGTA----AANA-AAGAT-TATCCCGCAG-ACCCCAGT--A-AGAA-ATCCGGC----CGATAAACC--AGCAGAA-CGAAACACAAACA-AAGGGATCCT-TGCTACACAGTGGCGGGNAAATTAGGNACTGGATCAGTGGACTGAGTCCGNAAGGAACAAGCGGAGATCGATGGAANGATGATTGGGCATCCCGCTACCTGGCCCAAAACCCGCTGTGAAGAGANGAGTACAAACCGTTAG-AGA-TGTG-GAATC--CCCGCACCTAA------C-GAAGAACC-GCC-AAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTG-AACTGTTTTTTTAT-GC----TG------AAC--TG-T--------TTAAACCA-GCTTGAACTGT-TTTTA-G-CTGTTTAAAAACTGTTNTGCATTGTT-------TCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATGCACAGGAATA-CAC-AGGATTTAATACACNGGAA-TTNAC-GGATTTA--------ATACA-A-GGAATACACA-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-T-AACACGTTC-C--TA--AGTGTGC-TACA--TTTT------TGA-C-GTCATAATGC--CTCTCCAAGTGCGA-NTTCAAA--ACG------CGC---AAT--AGC-TT-CAC---CCTGTGCTAAAACTCG-A--CTCTAAACTAGGCCAGCGGC-T-AA-TAG-CCGACCTA---CGAC-TCCG---G-C-TCTAAA-CCCGGCCGGGCTC-ACCGG---CT---AGACCCG---G----GCTC--------TA-AAC--CC-GGCCGGGC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAAA-----------C--CTC---GACC--CCAGCGTCCTAGCTATTGCAACC--G----C---CC-NTGC-GGGGTCAAACCGC---TTGAC-CAATCAG------CATTG---GACCTCATTTGCA-TAAAAAGTTGCACTCA-GTTGAACCTCCCTATNGAGGG
Reference ( family-3 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACCGCACAGTCGTACCGTGGANNACACGTGAGACTTGTGTAAGGCAGCGGATGA-CGCGCCAGCGGAAA--TACAGG-AGTA-----GAG-GAATTA------TCNACCAGTG-TA-AGA-AGATT-----ATGT-TAGACG--AGGTA-TACGTCTGGGGGAA--TAAAGT-TTA---GTACAGA---GATGC-TCGC-CATCGATTAA---C-GC--CGGA-CCG-ATC--AAAAA--T--TGGCGGTTT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTNGGAAGGAATAT--C-TG-CC-GCCG-------TTTCTAG-GCGA---CATGT-AC-TGAAAAAAG-CC-T--CTGA-------------CACCAGTATAGTNTTA-CCAGT-TTT-ATA-CG-TTATTGAACGGC-ACTNCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGAAATTGTTTNGGTGCATAGCAGGCNGGATGTGGGAAAAACCGNTANAGTGATGCGTTTCCGGGGGACGAAGAG-CT-GACA-TAA--TACATA-CAGCACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAATA--CCATGCACA---GCCCCTTTTTACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACACAAA--CATGAA--GTGGGCAGGCAGCCCTA----G----------------CTCGTTAAG-GCG-------AAATTGGCCACCATG--AG---ACTCG---AGCC-GCGCACT---GGGAAAAANCTCAATTGG-CATCATTGC--A-GC----TGGC-A--C-GAGGC-CGGCA-A----CT---GGGAA-AAAA-CTCAATT-GGCA-CCAT------CGCTGCCANGC--TG-------AGGCA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACCC--AATTGGCACCAT-GNGCCAGTG--C-GCTG------------AGAGGACGCGTN-TGGC---AGC---CGANT-AGNCACTGGGGAAA---AAC--CC--ACTG-GCACNATG-CGAGNTGGGCA-C-TG-AGCTAGC-CTGGATGG-AACTCT---ACGA-GC-ATANAAG--AA-GCAA-AGCCG--CTC--GGC-ACTCTA-T----CAC-TC-T---TCAC-ATC--GACT-TCA-A--CCTGACCTAGAGAGCACAT-GGCT---CAGAAAA--CAGC-TAGAAATTCGTGG-A-CA------AGAGCTCAGAA-----G-AAA----GTGAACGA-TAACA--------TGG-T-A-CAGA---AA-AAGACT---GAGAATGCAA--CA-A-GATT-TCTTGAGCGAA---A---AGAATAGACG-GGGA-GTTACAG-G--AGGCTACTACATTG----ACAGCAGACTGA-AAGAAAGGCCAAGACTGAGGGTTNTTACCTAG-CCA-GAATCCTA--CAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGCAACG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GATTTTG-C-GA-TCATTTCCACNA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TGACTGAAGAAGC---TGG----------A-AGAACTG------AC--GGGCAAAAATCTA-G-AACCCTAGG-AAGG-A-T--CACTCCAGATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AA-GCAACGTTTATCCGC----AGACCAGTA----AANA-AAGAT-TATCCCGCAG-ACCCCAGT--A-AGAA-ATCCGGC----CGATAAACC--AGCAGAA-CGAAACACAAACA-AAGGGATCCT-TGCTACACAGTGGCGGGNAAATTAGGNACTGGATCAGTGGACTGAGTCCGNAAGGAACAAGCGGAGATCGATGGAANGATGATTGGGCATCCCGCTACCTGGCCCAAAACCCGCTGTGAAGAGANGAGTACAAACCGTTAG-AGA-TGTG-GAATC--CCCGCACCTAA------C-GAAGAACC-GCC-AAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTG-AACTGTTTTTTTAT-GC----TG------AAC--TG-T--------TTAAACTAAGCTTGAACTGT-TTTTA-G-CTGTTTAAAAACTGTTNTGCATTGTT-------TCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATGCACAGGAATA-CAC-AGGATTTAATACACNGGAA-TTNAC-GGATTTA--------ATACA-A-GGAATACACA-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-T-AACACGTTC-C--TA--AGTGTGC-TACA--TTTT------TGA-C-GTCATAATGC--CTCTCCAAGTGCGA-NTTCAAA--ACG------CAC---AAT--AGC-TT-CAC---CCTGTGCTAAAACTCG-A--CTCTAAACTAGGCCAGCGGC-T-AA-TAG-CCGACCTA---CGAC-TCCG---G-C-TCTAAA-CCCGGCCGGGCTC-ACCGG---CT---AGACCCG---G----GCTC--------TA-AAC--CC-GGCCGNGC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAAA-----------C--CTC---GACC--CCAGCGTCCTAGCTATTGCAACC--G----C---CC-AT-C-GGGGCCAGACCGCCGCTTGACTCAATCAGAAGCCGCATTGCTTGACCTCATTTGCA-TAAAAAGTTGCACTCA-GTTGAACCTCCCTATNGAGGG
gi|1 : TTCTTGT---CTGACCGCACAGTCAT----TGGATAACACG-GAGACTT-T-TAAG--AGCAGA----CGCGCCAACGGATA--AACAGA-AGTA-----GAG-GAATTA------TCAACCAGTG-TA-AGA-AGATT-----ATGT-TAGACG--AGATGCTATATCTGGG-------AAAAT-TTA---GTACAGA---GATG--TCGC-CATCGATTAA---C-GC--TGGAGCCG-ATC--AAAAAATT--TGGTG--TT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTGGGAAAGA-TAT--T-TG-CC-GC-G-------TTT--AG-GCGA---CATGT-ACCTGAAAAAAA-CC-TTTCTAA-------------CA--AGTACACGATTA-CCAGT-TTTTATA-CG-T-ATTGAACGGC-ACTTCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGA--TTGTTTTGG-GC-T-GCAGGCTGGATGTGGGAAA--CCGGTAAAGTAATGCGTTTCCGGGAGA-GAAGAG-CTCGACAATAA--TACA------CACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGTATT-GAA--GCCGGACATTTTGTA-------AAAAAATAA--AAATA--CCAT-CACA---GCCCCTTTTTA-G-GGCCTACTTTAAA-CAAAAT---A-TGAGTG-ACACACACAAAAACAT-AA--GTG--CA--CTGCCCTA----G----------------TTCGTTAAG-GC---------AATTGGCCACCATGCCAGCTGACCTG---AGCC--CGCACT---GGGAAAAACCCTAATTGGGCATCATTGC--A-GC----TGGC-A--C-GAGGC-CAGCA------CT---GGAAA-AAAAGCTCAATTTGGC--CCAC------CACTGCCAAGC--TG-------CG-CA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACC----ATTGGCACT----TGCCAGTAGAC-ACTG------------AGA--ACCATTT-TGGC----GC---TGAGTCAGGCACTGGGGAAA---AAC--CC--ATTG-GCACTGTG-CCAGCTGG-CA-CCTG-AGCCAGCACTGGAGAA-AATTTT---ACGG-GCTATAAAA---AG-GCAG-AGCC---CTC--G-C-ACTCT-------CAC-TC-T---TCAC-ATC--GACT-TCA-GACCCTGACCT-GAGA--ACAT-GGCT---CAGAAAA--CAGCCTAGAAATTCGTGG-A-CA------AGAGCTCAGAA-----GGAAA----GTGAATAA--AACA--------TGGCT-A-CAGA---AA-AAGACT---G-GAATGCAA--CA-AAGATT-TCTTGAGCGAA---A---AGA-TAGACA-GGGA-GCT-CAGCG--AGGCT--TACATGG----ACAGCAG-CTGA-AA-AAAGGCCAAGACTGAGAGTTTTTACCTACTCCACGAATCCTA--CAGACC-AGGCTTGGGATTTTTTT-CCCGGAG-TC---G---CAAAAGATGCA-CGCGGACTGGAA-CTGG-CCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GATTT-G-C-GA-TCATTACCACCA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGATAA-TGAGATTGG-AA-TCATACC--AC-G-TCCTTGCCTGAAGAAGC----GG----------A-A-AACTG------AC--GGGCAAAAATCTAGG-AACCCTAGG-AAGG-A-TTACACTCCAGATT-ACGCTA-TAAC-----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AAGGCAGCATTTATCCGC----AGACCAGTA----AAGA-AAGATGTAT-CCGCAG-A--CCAGT--A-AGAA-ATCGGGC----CGATAAACC--AGCAGAAGTAAAACACAAACA-AAGGGATCCTGTGCTACA-AGT-GC-GGTAAATTAGGCACT-GATCAGT-GACTG---TCGCAAGGAACAAGCGGAGATCGATGGAAGGATGATTGGG---CCCGCTACCTGGCTCAAAACCCG-TGTG-AGAGAAGAGTACAAACCGTTAGCAGATTGTGAGAATC--CCCGCACC--A------CTGAAGAACC-GCC-TAAAAGAAGAGAAGAAA-TGAGCCG-AAGTAAAAA-----CTTGAAACTGTTTTTTTAT-GC----TGTTTTAAAAC--TG-TTTTCATTGTTAAA--AAACTTGAACTGTATTTTATG-CTGTTTAAAAACTGTTTTACATTGTT-------TCTTTAATAAACATGTAAAACTAAAAC-CTTGGTGTTAGTCTTTA-TATGCAGAGGAATACCACAAGGATTTTATACACTGGAATTTCAC-AGATTTATGCGATCGATACA-G-GGAATACACAGGGAATACAC-G------GATA-TTT-----ATT--G-C----GATCGA----------TT-C--TA--AGTGTGC-TACA--TTTT------TGA-CAGTCATAATGC--CTC-CCAAGTGCGATTTTCAGA--A--------------AAT--AGCTTT-CAC---CCTTTTCCACAACTCA-A--AGCGAAAGTAGACCA-CGGC---AA-TAG-CCAACCTA---TAGC-TCCG---G-CATCTAAA-CCCGGCCATGCTT-A-------TT---A-ACCCG---G----ACTC--------TA-AAC--CC-GGCCG-GC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAAA--------------CTT---GACC--C---CGTCCTAGCTATTGCAACC--G----C---CCAAT-C-GAGGCCAGACCACCGCTTGACTCAATCAGAAGCCGCATTGCTTGACCTCATTTGCAGTAAAAAGT--CACTCA-GTTGAACCTCCCTATGGAGGG
gi|10 : taatgaaaggcttcgaacacctgtatttataggtgaaaaaaaggtaatgcattcaaccgtgtctgtgcatcacgtgatcaacccccttgtgcgttagtgtgcgttagcattcaTTACCTAG-CCA-GAATATGT--CAAACCCAGCCTTAGGAGTTTTTT-CCCGGAG-TC---A---CA--ATATGCAACG-GAACTGGAA-CTAGGCCTCTACAA--CA-CG-AAG-AATGCATCGGAACCTGAGGCCGCGCCAATGAGC-AAAGAA--GATTTTG-C-GA-TCATTTCCACG------------TA-GA-C-GGGATCA--TG--AAC-AGAATTAA-TGTGCTG-GGTGA-TGAAATTGG-AACTCATACC--Agggctata
gi|11 : G--AAA------CAGGAAAATCATGTCTTCGGATTGCTCCCCAGACAC-GCGAGATTAATTCGCCATAAGACCAGTAACACAATA-GAGAT-TATCACGCAATACCCCGTT--A-AGAA-ATTCGGCATCGCAGTAATTCGAAACTGAATCGAAAC-TAAAC--AAGGACTCCT-g
gi|12 : GATTTTACTG------AAT--TTTTTACAA-TTAG-C----GATCGAAT-AACACATTT-CCGTA--AGTGTGCTTACA--
gi|13 : gagatatacacttactgcga-A--CTCTAAACTAGGC--------T-AA--AG-C-GCTCTA---C-AC--CCG---G-T-TATAAA-CCCGACCGGGCTC-ACCGGGCTTT---AAACCTG---GCCGTGCTA--------TA-AAC--CC-GGCTGGAC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAaactatatttcattacttaattgaaacgattttccatacatgctctacaaaccaaaaacc
gi|14 : cctgcGA-CTTACACC-TGTATAT---AGAAG-AAC-------CTGCGT-TT-GAA--GCCGGACATTTT-TA-------AATAAA-AA--AAAAA--CCATGCACA---GCC--------------CTACTTTAAAACAAAAT----ATGAGTG-AC--ACAC
gi|16 : -----CTTG-AACTG--TTTTCAT-GCTTATTG------AAC--TG-T--------TTAAA
gi|17 : gggactgtgTTTATTATGCACAGGAATA-CAC-AGGATTTAAAACACTGGacattgtgc
gi|2 : AGAGTCG-GACA-TAA--TA-ATA-CAGCACATTTACTCCCA-GATC-AT--GA-CTTACAC--TATATCT---AGAGA-ATC-------T-GCGT-T--GAA--GCCGGACATTT-GTA-------AA--AATAA--A--CA--CCATG-ACA---GGCCTTTTTGACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACACATA--CATGAA--GTGGGCAAGCAG--CTA----G----------------CT--TTGAGAGCG-------A----------CATA--AG---ATTCGATAAGCTAGTGC-CT---GGGAAAAAACTCAATTGG-CACCATGCC--A-GCAGTATGGC-AACT-GAGAC-CAGC--A----CT---GGGAAGAAAA-CTCAATT-GGCA-CCATGGGATGCGCTGCCACCT--TGAAAAAAAAGACG-CGTCATGG-CCC--CAA--CCGAATGCCTTT-GGGAA--AAAACCAGAATTGGCACCATCGAGTTAG-G--CAACTG-------------GAGGTCGCGGA-TGGT---AACTCGCGACT-AGA-----GGTAAATGCAATGGCC--GCTG-GCACACTA-CGA
gi|2 : gagc----CT---GGGAA-AAAA-CTCAATT-GGCA-CCAT----------GCCA-GCAGTA-------TGGCAAC----TGA-GAC--CAG--C-----AC---T-GGGAAGAAAACTC--AATTGGCACCAT-GGG---ATG--C-GCTGCCACCTTGAAAAAAAAGACGCGTCATGGCCCCAAC---CGAAT--GCCTTTGGGAAAA---AAC--CAGAATTG-GCACCAT--CGAGTTAGGCAAC-TGGAGGTCGC---GGATGGTAACTC----GCGA--C--TAGAGGTAAATGCAATGGCCG--CT---GGC-ACACTA-CGATGCAC-TCCT---TCACTATC--GACT-TCAGA--CCTGACC-AGAGAACA-AT-GGCT---CAGAACA--C-GC-TAGAATTGCGTGG-AACA----------CTCAGAA-------AAA----GTGAA----TAACA--------TGG-T-ATCAGA---AAGAAGAC----GAGAATGCAA--CA-A-GATT--CTTGAGCGAAGTAA---AGAATAGACA-AG-A-GT-ACAG-G--AGGCTAC---ATTA----ACAGCA-ACTGA-CGG----GCCCAGACTGAAGGTTATTTCCTAG-CCA-GAATCCTAGGTAGACC-AGGCTTTGGAATTCTT--CCCGGAG-TC---AT--CA--AGAT-TAACG-GGACTGGAAACTGGGCCACTACAA--ATGCT-CAGGAAT------CAACCT----CCG-GC--ATGACA-AAAGAA----TTTTGGC-GA-TCATT-ACACGAACAC-------TA-GATC-GGAATTGATTT--AACACGCATTAA-TGTGCTGAG-TAAGTGAGAT-GG-AA-TCATAC---ACAG-TCC-TG-CTGA-GAAGC---TGG----------ATAGAACTGT-----AC--GGGAAAAAATCTA-G-AACCTTAGGGAAGGCACT--CACTCCTGATTCACGCTACTAATA----CGGCGTGCTAACAC-TCTGCGG------TG--AA-------C--GAC--TTG-GTCGC-GGAT-GCCC---AGA-AA---AACGATTATC-------AGACCA-TA----AGAACAGGAT-TATCCCGCAG-ACT--AGTTGACAGAATATCTG-C----CGATTAACC--AGCAGA---GAAAAACAATCAGAAGGGA-CCT-TGC-ACACAGTGGCGGGGAAATTAGAAACTGGATCAGTGGACTGAGTCCGGAAG-AACAAGCGGAGATCGATG-AATAATGATTGGACATCCCG-TACCTGGCC--AAACCTGCTGTGAAGAGACGAG---AAAACGT-AG-AGAGTGTG-GA-TC--CCCGCACCTA-------C-TAAGAACCCGCT-AAAAAGAAGC-AA-AAACTGAGCCGAAAGTAAAAC-----CTTG-AACTGTTTTTTTATAGC----C--------ACGGTGGT--------TTAAGCC---CTTAGGGTG------A-GGCTGTTTTA----TGTCTTG----GTG-------TGTTTA-TAAACATGTAAGACTTAGATACTTGGTGTTAGTCTTTATTATGCA-------------AGAATT-AA-GCACAGGAA-TGAACTGGATTTC---------TGCG-ACGGCATA-ACA-----TTCGCTAAAGTGTGATCATTT-------T--GAC----G-TC-A-T-AGCATGCTCTC--TGGCAGTGT-C-CAGA--TTTCAGAAAATGAGC-TTCA----GC--CTTTCCA----CGA-ACTCAAA--ACAGTAGACCACGGCAAT--AGC----CAA---CTTAT----AAAC-CG-AAACTCTAAACCCGGCTCGGGGC-TCAA-CGG-GCAA--TAAAGCGAC-GCCGAGTG-C-TATAAA-CCCGGC--GGCTCGACCGG---CTCACAGGCCGA---T----GCTA--------TATAACTTCA-GGCCGTGC--T--------ATAAGAACGCGC-------CGGGTCACTC------GGG----------------C--CTCTAAAACC--C--GCGGC-TGGCCGGTGCTACCCGG----CGAACC-CTGC-TGGGTCAAACTGC----TGAC--AATCA-------CAT-----GACCTC-TTTGCA-TACAAAGTTGCACTCAGGTTGAACCtgcactccttcactatcgacttcagacctgaccagagaacaatggctcagaacacgctagaattgcgtggaacactcagaaaaagtgaataacatggtatcagaaagaagacgagaatgcaacaagattcttgagcgaagtaaagaatagacaagagtacaggaggctacattaacagcaactgacgggcccagactgaaggttatttcctagccagaatcctaggtagaccaggctttggaattcttcccggagtcatcaagattaacgggactggaaactgggccactacaaatgctcaggaatcaacctccggcatgacaaaagaattttggcgatcattacacgaacactagatcggaattgatttaacacgcattaatgtgctgagtaagtgagatggaatcatacacagtcctgctgagaagctggatagaactgtacgggaaaaaatctagaaccttagggaaggcactcactcctgattcacgctactaatacggcgtgctaacactctgcggtgaacgacttggtcgcggatgcccagaaaaacgattatcagaccataagaacaggattatcccgcagactagttgacagaatatctgccgattaaccagcagagaaaaacaatcagaagggaccttgcacacagtggcggggaaattagaaactggatcagtggactgagtccggaagaacaagcggagatcgatgaataatgattggacatcccgtacctggccaaacctgctgtgaagagacgagaaaacgtagagagtgtggatccccgcacctactaagaacccgctaaaaagaagcaaaaactgagccgaaagtaaaaccttgaactgtttttttatagccacggtggtttaagcccttagggtgaggctgttttatgtcttggtgtgtttataaacatgtaagacttagatacttggtgttagtctttattatgcaagaattaagcacaggaatgaactggatttctgcgacggcataacattcgctaaagtgtgatcattttgacgtcatagcatgctctctggcagtgtccagatttcagaaaatgagcttcagcctttccacgaactcaaaacagtagaccacggcaatagccaacttataaaccgaaactctaaacccggctcggggctcaacgggcaataaagcgacgccgagtgctataaacccggcggctcgaccggctcacaggccgatgctatataacttcaggccgtgctataagaacgcgccgggtcactcgggcctctaaaacccgcggctggccggtgctacccggcgaaccctgctgggtcaaactgctgacaatcacatgacctctttgcatacaaagttgcactcaggttgaaccacgaggacggcgcgtttagtatact
gi|3 : gagcagagtcggacataataatacagcacatttactcccagatcatgacttacactatatctagagaatctgcgttgaagccggacatttgtaaaaataaacaccatgacaggcctttttgacggggctactttaaaacaaaataatgagtgaccgacacatacatgaagtgggcaagcagctagctttgagagcgacataagattcgataagctagtgcTTCTTGTAACCCGACC----AGTTGTACCGTGGAATACACGTGAGATTTGTGTAAGGCAGCGGATGATCGCTCCAGCGGGAAAGTACAG--AGCAATTTCGGGCGAATTACTTTGTTCT-TCAGTG-TATAGATAGATTTTTCTGTCT-TAGACACTGGGTA-TACATCTGAGGGAAACTA---T-TTAATGGTACATAATTGATGT-TCGC-CATCGA--AATTTC-GCCTCGGA-CCATATC--AAAAA--TCGTGGCGGTTT---GATT--ATTCTTAGTATTGCGTCCCATCTTATTTCG-AACTCGTAGTTGGAAG--ATAT--CTTG-CCTGCTGATTTGTTTTTCTAGAGAGAACCCATGTAAC-TG--AAAAG-TCGT--CTGATGATAACCGTATCCACTAGTATAGTCTTAGCCAGT-TAT-ATAGTGTTTAATGAACGGCTACTACAAacgaggacggcgcgtttagtatact
gi|3 : TATGGAGAAATTGTTTGAGTGCATAGCAGGCAGGATGTGGGAAAAACCGTTAC-GTGATGCGTTTTCAGGGGACGAAGAG-CT-CACA--AATTTACCTAGCAGCACA-TACATCACACGAACTATATGAGCTTACACCGTGTTTCTATCAGAAGCAGCAGCCTATC-ACAT-TTAGAAGTGCTGACCAGTTGCTACTCAACTAGCATATAATTAGGTAGTCTATGCACAAGCGTCCCTTTTTATATGTGCTACTTTTAAA-AAAATGGAAATTTATATACCG---CAAA--GTCGGACTGTAAGCAGGCAGCTCTGTCACGGATAACACCCATTGCTCTCGTTAAGTGCATCCGTCCAAATTGGCCACT-----AG---ACTCG--------GCATACTAGAGGTAGAACTCTCAATTGG-CATCCATGCCTACGCT---TGGC-A--CTGAAGC-CTACA-GATCCCT---CGGAA-AAAA-CTCAATT-GGC--CCAT-------G--GCCAGTC--TG--------GAC--------GA-G-C--CAGT-C-----AC---T-GGGGA--AA--CC--ACTGTGCACAAT-Gtgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaattggccactagactcggcatactagaggtagaactctcaattggcatccatgcctacgcttggcactgaagcctacagatccctcggaaaaaactcaattggcccatggccagtctggacgagccagtcactggggaaaccactgtgcacaatgtcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|3 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagc----TGGCCA--C-TAGACTCGGCATA----CTAGAGGTAG-AACT-CTCAATT-GGCATCCAT-------GC--CTACGC--TT--------GGCA-C----TGAAGCCTACAGATC-----CC---TCGGAAA--AAACTC--AATTGGC-CCAT-G-GCCAGT------CTG----------------GACG------------AGC---C-----AGTCACTGGGGAAA--------CC--ACTGTGCACAATGTCAAGATGGGCA-G-T----CTACCTCTGGCT------TCTCAAATGAAGC-AGATAAG--AA-GCAA-AATCGAGCTCTGGGCGACTCTAAT----CAAATC-GGGGTCAC-ATCCTGACTATCA-A--CCTGACCTAGAGAGCACATGGGCTGCGTAGAAACTTCAGC-TAGAAATTCGTGGTA-AAGTATGCAGAGCTTAGAGTACACG-AAAACACGTGGACGACTACCATTCATTTGTGG-TAA-CAGATACAA-TAGTCTCGAAAAAATGCAAACCACA-GATTGTCTTGAGCGCA---CGTTATAATGTACGCGGGAGGTTACAG-GCCAGGTTACTATTTTGTATCACAGCAGACTGATAAGAAAGGCAAGAATTGAGtcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|4 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaatGAGTACAAACCGTTAG-AGA-TGTG-GAATCTGCCCGTACCTAAACAAAGT-GAAGAACC-GCCTAAAAAGAAGA-A-GAAACTTAGCCGAAAGTAAAAA-----CG-G-GACTGTGCTTT----AG----TG------AAC--TG-T--------TT---TTATGCTT-AACTGT-TTTTA-----------AAAC-ATTGTGCATTGTTCTTGTTTTCCTTAATAAACATGTAAA-CTTAAAC-CTTG-TGTTATTCTT----------------------GGGATTTA-------------TTAT-GGATTTA--------ATACACA-GGAATACACA-AAATTTCACAG------GAT--TTT-----A-T--G-CCTTGGATCGA-T--ACACATTC-C--TA--AGTGTGC-TACATTTTTT------TGA-C-GTCATAATGCTTTTCTCCAAGTACAG-C--CAAATGACGT-----CAC---AATAGAGC-TCGCGCT--CCTGTGCTAAAACCTGCA--CTCTAAACTAGCCCAGCGGC---AA-TA---CACTCTA---CGCCATAC----G-C-TCTGAACCCCGGCCGGGCCT-ACCGG---C--------------------CTC--------TA-AAC--TC-ACCCGTGCTAT--------A---------GC-------CCGGACACCCCTGCAGGGGTCAAA-----------TCGCTT---GACCAATCAGCAT
gi|4 : a----GCTC--------TG-AAC--CCCGGCCGGGCC-T--------A------------------CCGGC---CTCT---------AAA-----------C---TC----ACC--C----GT----GCTATAGC--CC--GGACAC---CC-CTGCAGGGGTCAAATCGC---TTGAC-CAATCAG------CATTG----ACCTCATTTGCA-TAAAAAG-TGCACTCA-GTTG-ACCTCCCTATCGAGGGtgacctcatttgcataaaaagtgcactcagttgacctccctatcgaggg
gi|5 : agagtacaaaccgttagagatgtggaatctgcccgtacctaaacaaagtgaagaaccgcctaaaaagaagaagaaacttagccgaaagtaaaaacgggactgtgctttagtgaactgtttttatgcttaactgtttttaaaacattgtgcattgttcttgttttccttaataaacatgtaaacttaaaccttgtgttattcttgggatttattatggatttaatacacaggaatacacaaaatttcacaggattttatgccttggatcgatacacattcctaagtgtgctacatttttttgacgtcataatgcttttctccaagtacagccaaatgacgtcacaatagagctcgcgctcctgtgctaaaacctgcactctaaactagcccagcggcaatacactctacgccatacAAGAAGA-A-GAAACTGAGCCGAAAGTAGAGATGGTGCTTG-AACTGTTTT--TAT-GC----TG------AAC--TG-T--------TTAAA---------AACTG------------ATTTAAAAAC-ATTGTGCATTG-T-------TCTTTAATAAACATGT-AAACTTAAAC-CTT-GTGTTAGTCTTTATTATGCACAGGAATA-CAC-AGGATTTAATACAGAGGAA-T--------------------ACACA-A-GAATTTTACT-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-TAAACACATTC-C--TA--AGTGTGC-TACAG-TTTT------TGA-C-GTCATAATG---CTCTCCAAG-------TCCAAA--AC-------CG----AAT--GAC-TT-CACAATCCTGTGCTAAACCTGC-A--CTCTCAACTAGGCCAGCGGCTT-AACTAGACCGACCTA---TAAA--CCG---GCC-TCTAAA-CCCGGTC-GGCTC-ACCGGCT-CT---AGACCCGGCCG----GCTCACCGGTTATA-AAC--CA-GGCCGGGC--TCTAGACACG---------GCCGGGTAGCCGGCGACCCCTG-TGG---CAAAACTGCGCATGTC--CTT---GACC--CCAGCGTCCTAGATATTG-AACC--A----C---CC-AT-C-GGG
gi|6 : GAA-CTGGGCCTCTACAGATCC-CTGCAG-AAC------GAGC-T----CCG-GCC-AGGAAC-AAAGAA--GATTTTG-CGGA-TCATTACCACCACCAC-------TAGGA-CGGGGATCG--TTAGAAC-CGCATTAATTGTGCTGAGGTAA-TGAGATGGG-AA-TC-TACCGAGCAGTTCC-TG-CTGAAGAAGCTATTGGCACGTTTCCCA-AGAACTGGGTATCACGTGGGCAAAAATCTA-GTAACagcgtttatac
gi|6 : ATT-ACGCTACTAACATCCTC--CGTGCTA-CACCT-TGCGGTTGTTCGGCCAAA------CAGGACATTTG-GTCGCatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatattacgctactaacatcctccgtgctacaccttgcggttgttcggccaaacaggacatttggtcgc
gi|7 : gaactgggcctctacagatccctgcagaacgagctccggccaggaacaaagaagattttgcggatcattaccaccaccactaggacggggatcgttagaaccgcattaattgtgctgaggtaatgagatgggaatctaccgagcagttcctgctgaagaagctattggcacgtttcccaagaactgggtatcacgtgggcaaaaatctagtaacatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatATGA-CGCG--AGAGGAAA--TACAGGCAATA-----GAG-GAATGA------TTCACCAGTTCTA-GGA-AGATT-----ATGGATAGACG--AAGTA-TA-GTCTGGCGGAA--TAAAGTGTTA---GTACAGA---GATGCGTCGCGCATCGATTTA---CAGC--TGGA-C-G-ATCTAAAAAA--T--TGGGTGTTTTATGAGTTCAT-----GTATTGCGTCC---CC-AT---GGAAC-----GTAGGAAGGAATATTAC-TGGCC-GCCG-------TTTTTAG-GCGA---CATGT-A--TGAAAAAAGACC-T--CTGG-------------TATCAGTCTGGTTGTA-CAAGTGCTT-ATA-CG-TTATTGAACGGC-ACTGCTAA
gi|8 : gcCC-AGGCTTAGGATTTTTTTTCCCGGAGATCCCAGAATCAGAAGATGTAACA-GGGATGGAA-CTGGGTCTTTACAA--CC-CT-CAG-AAT------GAGCCT----CCG-GCC-ATAAAC-AAAGAA--GATTTTG-C-GA-TCATTTCCACGA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGA-GTAA-TGAGATTGGAAA-TCATACC--ACAG-TCC-T-ACTGAAGAAGC---TGG----------A-AAAACTG------AC-----C-----TCTA-A-AAACCTAGG-AAGGAA-TA-CACCCCAGATT-ACGCTACTAAC-----C--CGTGCTA-CAC-T-TGCGG------AC--AAtgaaagatttggg
gi|9 : gacCC-ATGACCCAAAGAATAGATTTTG-C-TACTCATTTCCACC--CACGTTAGGTTA-GA-C-GGGATAG--TC--AAC-AGAATTAA-TGTGTGGAGA-GA-TGAGATTGGAAA-CCATACA--AGAA-TCC-T-ACTGAAGAAGA---TGA----------A-GGAGCTG------AC---GGCAAAAAT--------CCCAAGG-ACGG-A-----ACT---------CGCCACTAAC-----C--CATGCTA-CAC-C-TGTGG------AG--AAATACTAGTAGGAC-ATTG-GT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CCCCCAAACTTGACCCAAGTTAATATATAACTTATTTGTTACCTGCGTCCGCCCGTTAGGTACTAG
Unaligned ( gi|18 ): GCATCCTAGATATTGAACCGGCCATCAGGACAGTTTATA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111
lowQualScore : 222 2222 2222 1 222 11 1111 11 111 33333 1 333333 1 1 1 33333 1 11 1 11 2222222222222 222 222 22 1 22222 111 11111 11 22222 222 333333333 333333333333333333333 111 2222 1 1 444444444 1 1 222 2222 1 2222 77777777777777777 1 1 1 1 1 1 11 1 222 11 11 1 1111 2222222222222 1 1 22 1 11 111 1 333333333 1111 11 11 3333333 1 111111111 111 222222 22222 1 111 2222222222 1 1 11 55555555555555555555555555555555555555555555555555555555555555555555555555555 222 1 3333333333 111111 1 3333333 111 11 6666666666666666666666666666666666666 11 3333333333333 11 11 111111111111111111111111111111111111111111111111111111111111111 33333333 11 1 11 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 11 1 2222 11 1 1 222 11 1 555555555555 666666666666666666666666666666666666 22222 222 1 333333 11 111 22 4444444 11 1 11 2222 2222222222222 11 22222 1 1 11 1 11 1 44444444444 1 11111 222222 1111 2222222222222 1 111 22 1111 3333333333 33333333333 111 1 444444 33333333 111 3333333333333333333 11 22222 3333333 2222 1 1 2222222222222 1 2222 11 333 22 1 1 1 1 1 1 1 222 1 1 222 1 11 1 1 1 2 1 11 66666666666 1 1 1111 22222 111 44444444444 11 000000000000000000000000000000000000000000000000 333333333 1 2222222222222 11 55555555555555555555555 111 11 222222 11 33333333333333333 2222 11 11 11 222222 1 1 111 888888888888888888888888888888 11 3333333333 1111111 444444444444444444444444444 111 55555555555555555555555555555555555 666666666666666666666666666666 11111111 66666666666666666666666666666 11 11 33333333333 1 222 22 666666666666666 1 11 1
lowQualScore : 111 3333 3333 22 5 111 77 8888 6 88 555 33333 3 888888 88 3 3 3 33333 3 88 3 22 5555555555555 333 333 55 3 7 66666 999 88888 88 77777 888 333 333333333 777777777777777777777 1 333 7777 3 3 555555555 2 3 333 4444 7 3 2222 55555555555555555 1 3 3 3 3 3 7 3 1 88 1 5 222 1 88 1 66 5 5555 8888888888888 7 3 3 00 0 22 777 0 1 666666666 4444 33 88 2222222 0 3 888888888 55 777 0 22 3 444444 55 44444 0 444 4444444444 2 2 00 99999999999999999999999999999999999999999999999999999999999999999999999999999 7 333 1 3 3333333333 888888 0 4 7777777 444 8 8 8 88 7777777777777777777777777777777777777 8 5 11 1111111111111 8 11 0 11 0 0 666666666666666666666666666666666666666666666666666666666666666 7777 0 11111111 33 0 11 66 0 1 6 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 88 3 7777 44 2 6 3 333 88 7 3 222222222222 777777777777777777777777777777777777 22222 333 3 333333 88 777 00 5555555 7 44 6 3 44 1111 9999999999999 44 22222 1 3 3 88 0 1 1 33 0 66666666666 2 3 0 8 22222 8 8 333333 7777 8 6 1 6 99 6 6 6 7 6666666666666 6 6 6 99 99 6 6 3 6 3 3 6 111 0 8 8 55 0 4444 5555555555 8 3 33333333333 0 444 0 888888 2 3 8 88888888 8 000 1111111111111111111 0 11 8 6 7 6 33333 0 1111111 6 8888 1 3 3 6 7777777777777 3 3 6 8888 88 777 7 00 7 3 5 5 5 5 1 1 5 5 111 1 5 5 1 111 5 88 5 5 1 7 7 3 6 3 7 88 00000000000 3 3 9999 2 3 00000 0 8 555 8 00000000000 11 8 222222222222222222222222222222222222222222222222 1 2 222222222 3 3 3 0 55 0 5 9999999999999 0 11 3 55555555555555555555555 444 6 66 1 6 333333 99 55555555555555555 0 2222 4 8 11 11 8 99 888888 0 0 3 666 3 3 333333333333333333333333333333 33 2222222222 0 8 0 7777777 888 000000000000000000000000000 444 999 8 8 8 88888888888888888888888888888888888 6 99 6 555555555555555555555555555555 6 33333333 00000000000000000000000000000 11 0 22 66666666666 1 8 0 333 7 00 222222222222222 7 3 44 3 7 1
lowQualScore : ... .... .... .. . ... .. .... . .. ... ..... . ...... .. . . . ..... . .. . .. ............. ... ... .. . . ..... ... ..... .. ..... ... ... ......... ..................... . ... .... . . ......... . . ... .... . . .... ................. . . . . . . . . . .. . . ... . .. . .. . .... ............. . . . .. . .. ... . . ......... .... .. .. ....... . . ......... .. ... . .. . ...... .. ..... . ... .......... . . .. ............................................................................. . ... . . .......... ...... . . ....... ... . . . .. ..................................... . . .. ............. . .. . .. . . ............................................................... .... . ........ .. . .. .. . . . .............................................................................................. . .. . .... .. . . . ... .. . . ............ .................................... ..... ... . ...... .. ... .. ....... . .. . . .. .... ............. .. ..... . . . .. . . . .. . ........... . . . . ..... . . ...... .... . . . . .. . . . . ............. . . . .. .. . . . . . . . ... . . . .. . .... .......... . . ........... . ... . ...... . . . ........ . ... ................... . .. . . . . ..... . ....... . .... . . . . ............. . . . .... .. ... . .. . . . . . . . . . . ... . . . . ... . .. . . . . . . . . . .. ........... . . .... . . ..... . . ... . ........... .. . ................................................ . . ......... . . . . .. . . ............. . .. . ....................... ... . .. . . ...... .. ................. . .... . . .. .. . .. ...... . . . ... . . .............................. .. .......... . . . ....... ... ........................... ... ... . . . ................................... . .. . .............................. . ........ ............................. .. . .. ........... . . . ... . .. ............... . . .. . . .
lowQualScore : 000 0000 0000 00 5 000 55 0000 7 33 333 33333 3 333333 33 3 3 3 33333 3 33 3 77 7777777777777 333 333 33 3 3 77777 000 77777 33 77777 777 333 777777777 000000000000000000000 0 000 0000 3 3 333333333 0 3 333 3333 3 3 7777 33333333333333333 0 3 3 3 3 3 3 3 0 55 0 5 000 0 55 0 55 0 7777 3333333333333 3 3 3 77 0 55 555 0 2 555555555 2222 88 00 5555555 8 2 555555555 00 555 2 88 0 222222 88 00000 0 555 3333333333 0 0 33 77777777777777777777777777777777777777777777777777777777777777777777777777777 3 333 0 3 9999999999 888888 0 2 2222222 000 0 0 0 66 2222222222222222222222222222222222222 0 0 00 8888888888888 0 00 8 00 8 8 222222222222222222222222222222222222222222222222222222222222222 2222 2 88888888 88 0 88 55 2 0 7 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 33 3 7777 77 0 7 3 333 33 3 3 777777777777 333333333333333333333333333333333333 00000 333 3 333333 33 777 77 7777777 3 00 7 3 77 7777 0000000000000 00 33333 0 3 3 33 0 2 0 22 0 00000000000 5 2 0 0 22222 0 0 000000 0000 0 7 5 7 22 7 7 7 8 7777777777777 7 7 7 22 22 7 7 7 7 2 3 7 777 8 0 0 44 8 8888 0000000000 0 2 00000000000 8 222 0 000000 5 5 0 44444444 0 000 3333333333333333333 8 66 0 7 3 7 33333 7 7777777 7 3333 0 3 3 7 7777777777777 3 7 7 3333 33 777 3 77 3 3 5 0 0 0 0 0 0 0 000 0 0 0 0 000 0 00 0 5 0 3 3 3 7 3 3 33 77777777777 3 3 0000 5 2 00000 8 0 000 0 00000000000 00 0 777777777777777777777777777777777777777777777777 0 5 888888888 2 2 2 0 00 8 6 6666666666666 8 66 8 00000000000000000000000 888 5 55 0 0 000000 00 88888888888888888 8 4444 6 0 00 00 0 00 888888 0 0 2 222 2 2 555555555555555555555555555555 88 5555555555 2 8 8 5555555 888 000000000000000000000000000 000 222 0 2 0 99999999999999999999999999999999999 7 22 7 333333333333333333333333333333 7 00000000 66666666666666666666666666666 22 8 22 55555555555 0 8 0 333 3 00 777777777777777 3 3 77 3 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACCGCACAGTCGTACCGTGGANNACACGTGAGACTTGTGTAAGGCAGCGGATGA-CGCGCCAGCGG--AAATACAGG-AGTA-----GAG-GAATTA------TCNACCAGTG-TA-AGA-AGAT-----TATGT-TAGACG--AGGTA-TACGTCTGGGGGAA--TAAAGT-TTA---GTACAGA---GATGC-TCGC-CATCGATTAA---C-GC--CGGA-CCG-ATC--AAAAA--T--TGGCGGTTT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTNGGAAGGAATAT--C-TG-CC-GCCG-------TTTCTAG-GCGA---CATGT-AC-TGAAAAAAG-CC-T--CTGA-------------CACCAGTATAGTNTTA-CCAGT-TTT-ATA-CG-TTATTGAACGGC-ACTNCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGAAATTGTTTNGGTGCATAGCAGGCNGGATGTGGGAAAAACCGNTANAGTGATGCGTTTCCGGGGGACGAAGAG-CT-GACA-TAA--TACATA-CAGCACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAATA--CCATGCACA---GCCCCTTTTTACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACACAAA--CATGAA--GTGGGCAGGCAGCCCTA----G----------------CTCGTTAAG-GCG-------AAATTGGCCACCATG--AG---ACTCG---AGCC-GCGCACT---GGGAAAAANCTCAATTGG-CATCATTGC--A-GC----TGGC-A--C-GAGGC-CGGCA-A----CT---GGGAA-AAAA-CTCAATT-GGCA-CCAT------CGCTGCCANGCTG-A------GGCA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACCC--AATTGGCACCAT-GNGCCAGTG--C-GCTG------------AGAGGACGCGTN-TGGC---AGC---CGANT-AGNCACTGGGGAAA---AAC--CC--ACTG-GCACNATG-CGAGNTGGGCA-C-TG-AGCTAGC-CTGGATGG-AACTCT---ACG-AGC-ATANAAG--AA-GCAA-AGCC--GCTC--GGC-ACTCTA--C----CACTC---TTCAC-ATC--GACT-TCA-A--CCTGACCTAGAGAGCACAT-GGCT---CAGAAAA--CAGC-TAGAAATTCGTGG-A-CA------AGAGCTCAGAA-----G-AAA----GTGAACGA-TAACA--------TGG-T-A-CAGA---AA-AAGACT---GAGAATGCAA--CA-A-GATT-TCTTGAGCGAA---A---AGAATAGACG-GGGA-GTTACAG-G--AGGCTACTACATTG----ACAGCAGACTGA-AAGAAAGGCCAAGACTGAGGGTTNTTACCTAG-CCA-GAATCCTA--CAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGCAACG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GATTTTG-C-GA-TCATTTCCACNA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TGACTGAAGAAGC---TGG----------A-AGAACTG------AC--GGGCAAAAATCTA-G-AACCCTAGG-AAGG-A-T--CACTCCAGATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AA-GCAACGTTTATCCGC----AGACCAGTA----AANA-AAGAT-TATCCCGCAG-ACCCCAGT--A-AGAA-ATCCGGC----CGATAAACC--AGCAGAA-CGAAACACAAACA-AAGGGATCCT-TGCTACACAGTGGCGGGNAAATTAGGNACTGGATCAGTGGACTGAGTCCGNAAGGAACAAGCGGAGATCGATGGAANGATGATTGGGCATCCCGCTACCTGGCCCAAAACCCGCTGTGAAGAGANGAGTACAAACCGTTAG-AGA-TGTG-GAATC--CCCGCACCTAA------C-GAAGAACC-GCC-AAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTG-AACTGTTTTTTTAT-GCT----G------AAC--TG-TTT---------AAA-CAGCTTGAACTGT-TTTTA-G-CTGTTTAAAAACTGTTNTGCATTGTT-------TCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATGCACAGGAATA-CAC-AGGATTTAATACACNGGAA-TTNAC-GGATTTA--------ATACA-A-GGAATACACA-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-T-AACACGTTC-C--TA--AGTGTGC-TACA--TTTT------TGA-C-GTCATAATGC--CTCTCCAAGTGCGA-NTTCAAA--ACG--------CG-CAAT--AGC-TT-CAC---CCTGTGCTAAAACTCG-A--CTCTAAACTAGGCCAGCGGC-T-AA-TAG-CCGACCTA---CGAC-TCCG---G-C-TCTAAA-CCCGGCCGGGCTC-ACCGG---CT---AGACCCG---G----GCTC--------TA-AAC--CC-GGCCGGGC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAAA-----------C--CTC---GACC--CCAGCGTCCTAGCTATTGCAACC--G----C---CCNTGC-GGGGTCAA---ACCGCTTGAC-CAATCA------GCATT----GACCTCATTTGCA-TAAAAAGTTGCACTCA-GTTGAACCTCCCTATNGAGGG
Reference ( family-3 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACCGCACAGTCGTACCGTGGANNACACGTGAGACTTGTGTAAGGCAGCGGATGA-CGCGCCAGCGG--AAATACAGG-AGTA-----GAG-GAATTA------TCNACCAGTG-TA-AGA-AGAT-----TATGT-TAGACG--AGGTA-TACGTCTGGGGGAA--TAAAGT-TTA---GTACAGA---GATGC-TCGC-CATCGATTAA---C-GC--CGGA-CCG-ATC--AAAAA--T--TGGCGGTTT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTNGGAAGGAATAT--C-TG-CC-GCCG-------TTTCTAG-GCGA---CATGT-AC-TGAAAAAAG-CC-T--CTGA-------------CACCAGTATAGTNTTA-CCAGT-TTT-ATA-CG-TTATTGAACGGC-ACTNCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGAAATTGTTTNGGTGCATAGCAGGCNGGATGTGGGAAAAACCGNTANAGTGATGCGTTTCCGGGGGACGAAGAG-CT-GACA-TAA--TACATA-CAGCACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAATA--CCATGCACA---GCCCCTTTTTACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACACAAA--CATGAA--GTGGGCAGGCAGCCCTA----G----------------CTCGTTAAG-GCG-------AAATTGGCCACCATG--AG---ACTCG---AGCC-GCGCACT---GGGAAAAANCTCAATTGG-CATCATTGC--A-GC----TGGC-A--C-GAGGC-CGGCA-A----CT---GGGAA-AAAA-CTCAATT-GGCA-CCAT------CGCTGCCANGCTG--------GGCA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACCC--AATTGGCACCAT-GNGCCAGTG--C-GCTG------------AGAGGACGCGTN-TGGC---AGC---CGANT-AGNCACTGGGGAAA---AAC--CC--ACTG-GCACNATG-CGAGNTGGGCA-C-TG-AGCTAGC-CTGGATGG-AACTCT---ACG-AGC-ATANAAG--AA-GCAA-AGCC--GCTC--GGC-ACTCTA--C----CACTC---TTCAC-ATC--GACT-TCA-A--CCTGACCTAGAGAGCACAT-GGCT---CAGAAAA--CAGC-TAGAAATTCGTGG-A-CA------AGAGCTCAGAA-----G-AAA----GTGAACGA-TAACA--------TGG-T-A-CAGA---AA-AAGACT---GAGAATGCAA--CA-A-GATT-TCTTGAGCGAA---A---AGAATAGACG-GGGA-GTTACAG-G--AGGCTACTACATTG----ACAGCAGACTGA-AAGAAAGGCCAAGACTGAGGGTTNTTACCTAG-CCA-GAATCCTA--CAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGCAACG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GATTTTG-C-GA-TCATTTCCACNA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TGACTGAAGAAGC---TGG----------A-AGAACTG------AC--GGGCAAAAATCTA-G-AACCCTAGG-AAGG-A-T--CACTCCAGATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AA-GCAACGTTTATCCGC----AGACCAGTA----AANA-AAGAT-TATCCCGCAG-ACCCCAGT--A-AGAA-ATCCGGC----CGATAAACC--AGCAGAA-CGAAACACAAACA-AAGGGATCCT-TGCTACACAGTGGCGGGNAAATTAGGNACTGGATCAGTGGACTGAGTCCGNAAGGAACAAGCGGAGATCGATGGAANGATGATTGGGCATCCCGCTACCTGGCCCAAAACCCGCTGTGAAGAGANGAGTACAAACCGTTAG-AGA-TGTG-GAATC--CCCGCACCTAA------C-GAAGAACC-GCC-AAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTG-AACTGTTTTTTTAT-GCT----G------AAC--TG-TTT---------AAACCAGCTTGAACTGT-TTTTA-G-CTGTTTAAAAACTGTTNTGCATTGTT-------TCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATGCACAGGAATA-CAC-AGGATTTAATACACNGGAA-TTNAC-GGATTTA--------ATACA-A-GGAATACACA-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-T-AACACGTTC-C--TA--AGTGTGC-TACA--TTTT------TGA-C-GTCATAATGC--CTCTCCAAGTGCGA-NTTCAAA--ACG--------CG-CAAT--AGC-TT-CAC---CCTGTGCTAAAACTCG-A--CTCTAAACTAGGCCAGCGGC-T-AA-TAG-CCGACCTA---CGAC-TCCG---G-C-TCTAAA-CCCGGCCGGGCTC-ACCGG---CT---AGACCCG---G----GCTC--------TA-AAC--CC-GGCCGGGC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAAA-----------C--CTC---GACC--CCAGCGTCCTAGCTATTGCAACC--G----C---CCNTGC-GGGGTCAA---ACCGCTTGAC-CAATCA------GCATTG---GACCTCATTTGCA-TAAAAAGTTGCACTCA-GTTGAACCTCCCTATNGAGGG
gi|1 : TTCTTGT---CTGACCGCACAGTCAT----TGGATAACACG-GAGACTT-T-TAAG--AGCAGA----CGCGCCAACGG--ATAAACAGA-AGTA-----GAG-GAATTA------TCAACCAGTG-TA-AGA-AGAT-----TATGT-TAGACG--AGATGCTATATCTGGG-------AAAAT-TTA---GTACAGA---GATG--TCGC-CATCGATTAA---C-GC--TGGAGCCG-ATC--AAAAAATT--TGGTG--TT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTGGGAAAGA-TAT--T-TG-CC-GC-G-------TTT--AG-GCGA---CATGT-ACCTGAAAAAAA-CC-TTTCTAA-------------CA--AGTACACGATTA-CCAGT-TTTTATA-CG-T-ATTGAACGGC-ACTTCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGA--TTGTTTTGG-GC-T-GCAGGCTGGATGTGGGAAA--CCGGTAAAGTAATGCGTTTCCGGGAGA-GAAGAG-CTCGACAATAA--TACA------CACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGTATT-GAA--GCCGGACATTTTGTA-------AAAAAATAA--AAATA--CCAT-CACA---GCCCCTTTTTA-G-GGCCTACTTTAAA-CAAAAT---A-TGAGTG-ACACACACAAAAACAT-AA--GTG--CA--CTGCCCTA----G----------------TTCGTTAAG-GC---------AATTGGCCACCATGCCAGCTGACCTG---AGCC--CGCACT---GGGAAAAACCCTAATTGGGCATCATTGC--A-GC----TGGC-A--C-GAGGC-CAGCA------CT---GGAAA-AAAAGCTCAATTTGGC--CCAC------CACTGCCAAGCTG--------CGCA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACC----ATTGGCACT----TGCCAGTAGAC-ACTG------------AGA--ACCATTT-TGGC----GC---TGAGTCAGGCACTGGGGAAA---AAC--CC--ATTG-GCACTGTG-CCAGCTGG-CA-CCTG-AGCCAGCACTGGAGAA-AATTTT---ACG-GGCTATAAAA---AG-GCAG-AGCC---CTC--G-C-ACTCT--------CACTC---TTCAC-ATC--GACT-TCA-GACCCTGACCT-GAGA--ACAT-GGCT---CAGAAAA--CAGCCTAGAAATTCGTGG-A-CA------AGAGCTCAGAA-----GGAAA----GTGAATAA--AACA--------TGGCT-A-CAGA---AA-AAGACT---G-GAATGCAA--CA-AAGATT-TCTTGAGCGAA---A---AGA-TAGACA-GGGA-GCT-CAGCG--AGGCT--TACATGG----ACAGCAG-CTGA-AA-AAAGGCCAAGACTGAGAGTTTTTACCTACTCCACGAATCCTA--CAGACC-AGGCTTGGGATTTTTTT-CCCGGAG-TC---G---CAAAAGATGCA-CGCGGACTGGAA-CTGG-CCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GATTT-G-C-GA-TCATTACCACCA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGATAA-TGAGATTGG-AA-TCATACC--AC-G-TCCTTGCCTGAAGAAGC----GG----------A-A-AACTG------AC--GGGCAAAAATCTAGG-AACCCTAGG-AAGG-A-TTACACTCCAGATT-ACGCTA-TAAC-----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AAGGCAGCATTTATCCGC----AGACCAGTA----AAGA-AAGATGTAT-CCGCAG-A--CCAGT--A-AGAA-ATCGGGC----CGATAAACC--AGCAGAAGTAAAACACAAACA-AAGGGATCCTGTGCTACA-AGT-GC-GGTAAATTAGGCACT-GATCAGT-GACTG---TCGCAAGGAACAAGCGGAGATCGATGGAAGGATGATTGGG---CCCGCTACCTGGCTCAAAACCCG-TGTG-AGAGAAGAGTACAAACCGTTAGCAGATTGTGAGAATC--CCCGCACC--A------CTGAAGAACC-GCC-TAAAAGAAGAGAAGAAA-TGAGCCG-AAGTAAAAA-----CTTGAAACTGTTTTTTTAT-GCT----GTTTTAAAAC--TG-TTTTCATTGTTAAAA--AACTTGAACTGTATTTTATG-CTGTTTAAAAACTGTTTTACATTGTT-------TCTTTAATAAACATGTAAAACTAAAAC-CTTGGTGTTAGTCTTTA-TATGCAGAGGAATACCACAAGGATTTTATACACTGGAATTTCAC-AGATTTATGCGATCGATACA-G-GGAATACACAGGGAATACAC-G------GATA-TTT-----ATT--G-C----GATCGA----------TT-C--TA--AGTGTGC-TACA--TTTT------TGA-CAGTCATAATGC--CTC-CCAAGTGCGATTTTCAGA--A--------------AAT--AGCTTT-CAC---CCTTTTCCACAACTCA-A--AGCGAAAGTAGACCA-CGGC---AA-TAG-CCAACCTA---TAGC-TCCG---G-CATCTAAA-CCCGGCCATGCTT-A-------TT---A-ACCCG---G----ACTC--------TA-AAC--CC-GGCC-GGC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAAA--------------CTT---GACC--C---CGTCCTAGCTATTGCAACC--G----C---CCAATC-GAGGCCAGACCACCGCTTGACTCAATCAGAAGCCGCATTGCTTGACCTCATTTGCAGTAAAAAGT--CACTCA-GTTGAACCTCCCTATGGAGGG
gi|10 : taatgaaaggcttcgaacacctgtatttataggtgaaaaaaaggtaatgcattcaaccgtgtctgtgcatcacgtgatcaacccccttgtgcgttagtgtgcgttagcattcaTTACCTAG-CCA-GAATATGT--CAAACCCAGCCTTAGGAGTTTTTT-CCCGGAG-TC---A---CA--ATATGCAACG-GAACTGGAA-CTAGGCCTCTACAA--CA-CG-AAG-AATGCATCGGAACCTGAGGCCGCGCCAATGAGC-AAAGAA--GATTTTG-C-GA-TCATTTCCACG------------TA-GA-C-GGGATCA--TG--AAC-AGAATTAA-TGTGCTG-GGTGA-TGAAATTGG-AACTCATACC--Agggctata
gi|11 : G--AAA------CAGGAAAATCATGTCTTCGGATTGCTCCCCAGACAC-GCGAGATTAATTCGCCATAAGACCAGTAACACAATA-GAGAT-TATCACGCAATACCCCGTT--A-AGAA-ATTCGGCATCGCAGTAATTCGAAACTGAATCGAAAC-TAAAC--AAGGACTCCT-g
gi|12 : GATTTTACTG------AAT--TTTTTACAA-TTAG-C----GATCGAAT-AACACATTT-CCGTA--AGTGTGCTTACA--
gi|13 : gagatatacacttactgcga-A--CTCTAAACTAGGC--------T-AA--AG-C-GCTCTA---C-AC--CCG---G-T-TATAAA-CCCGACCGGGCTC-ACCGGGCTTT---AAACCTG---GCCGTGCTA--------TA-AAC--CC-GGCTGGAC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAaactatatttcattacttaattgaaacgattttccatacatgctctacaaaccaaaaacc
gi|14 : cctgcGA-CTTACACC-TGTATAT---AGAAG-AAC-------CTGCGT-TT-GAA--GCCGGACATTTT-TA-------AATAAA-AA--AAAAA--CCATGCACA---GCC--------------CTACTTTAAAACAAAAT----ATGAGTG-AC--ACAC
gi|16 : -----CTTG-AACTGTTTTC--AT-GCTTATTG------AAC--TG-TTT---------AAAACA
gi|17 : gggactgtgTTTATTATGCACAGGAATA-CAC-AGGATTTAAAACACTGGttgtgc
gi|2 : AGAGTCG-GACA-TAA--TA-ATA-CAGCACATTTACTCCCA-GATC-AT--GA-CTTACAC--TATATCT---AGAGA-ATC-------T-GCGT-T--GAA--GCCGGACATTT-GTA-------AA--AATAA--A--CA--CCATG-ACA---GGCCTTTTTGACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACACATA--CATGAA--GTGGGCAAGCAG--CTA----G----------------CT--TTGAGAGCG-------A----------CATA--AG---ATTCGATAAGCTAGTGC-CT---GGGAAAAAACTCAATTGG-CACCATGCC--A-GCAGTATGGC-AACT-GAGAC-CAGC--A----CT---GGGAAGAAAA-CTCAATT-GGCA-CCATGGGATGCGCTGCCACCTTGAAAAAAAAGACG-CGTCATGG-CCC--CAA--CCGAATGCCTTT-GGGAA--AAAACCAGAATTGGCACCATCGAGTTAG-G--CAACTG-------------GAGGTCGCGGA-TGGT---AACTCGCGACT-AGA-----GGTAAATGCAATGGCC--GCTG-GCACACTA-CGA
gi|2 : gagc----CT---GGGAA-AAAA-CTCAATT-GGCA-CCAT----------GCCA-GCAGTAT-----GGCAAC----TGA-GAC--CAG--C-----AC---T-GGGAAGAAAACTC--AATTGGCACCAT-GGG---ATG--C-GCTGCCACCTTGAAAAAAAAGACGCGTCATGGCCCCAAC---CGAAT--GCCTTTGGGAAAA---AAC--CAGAATTG-GCACCAT--CGAGTTAGGCAAC-TGGAGGTCGC---GGATGGTAACTC----GCG-A-C--TAGAGGTAAATGCAATGGCC--GCT---GGC-ACACTA--CGATGCACTCC--TTCACTATC--GACT-TCAGA--CCTGACC-AGAGAACA-AT-GGCT---CAGAACA--C-GC-TAGAATTGCGTGG-AACA----------CTCAGAA-------AAA----GTGAA----TAACA--------TGG-T-ATCAGA---AAGAAGAC----GAGAATGCAA--CA-A-GATT--CTTGAGCGAAGTAA---AGAATAGACA-AG-A-GT-ACAG-G--AGGCTAC---ATTA----ACAGCA-ACTGA-CGG----GCCCAGACTGAAGGTTATTTCCTAG-CCA-GAATCCTAGGTAGACC-AGGCTTTGGAATTCTT--CCCGGAG-TC---AT--CA--AGAT-TAACG-GGACTGGAAACTGGGCCACTACAA--ATGCT-CAGGAAT------CAACCT----CCG-GC--ATGACA-AAAGAA----TTTTGGC-GA-TCATT-ACACGAACAC-------TA-GATC-GGAATTGATTT--AACACGCATTAA-TGTGCTGAG-TAAGTGAGAT-GG-AA-TCATAC---ACAG-TCC-TG-CTGA-GAAGC---TGG----------ATAGAACTGT-----AC--GGGAAAAAATCTA-G-AACCTTAGGGAAGGCACT--CACTCCTGATTCACGCTACTAATA----CGGCGTGCTAACAC-TCTGCGG------TG--AA-------C--GAC--TTG-GTCGC-GGAT-GCCC---AGA-AA---AACGATTATC-------AGACCA-TA----AGAACAGGAT-TATCCCGCAG-ACT--AGTTGACAGAATATCTG-C----CGATTAACC--AGCAGA---GAAAAACAATCAGAAGGGA-CCT-TGC-ACACAGTGGCGGGGAAATTAGAAACTGGATCAGTGGACTGAGTCCGGAAG-AACAAGCGGAGATCGATG-AATAATGATTGGACATCCCG-TACCTGGCC--AAACCTGCTGTGAAGAGACGAG---AAAACGT-AG-AGAGTGTG-GA-TC--CCCGCACCTA-------C-TAAGAACCCGCT-AAAAAGAAGC-AA-AAACTGAGCCGAAAGTAAAAC-----CTTG-AACTGTTTTTTTATAGCC------------ACGGTGGTTT---------AAGCC--CTTAGGGTG------A-GGCTGTTTTA----TGTCTTG----GTG-------TGTTTA-TAAACATGTAAGACTTAGATACTTGGTGTTAGTCTTTATTATGCA-------------AGAATT-AA-GCACAGGAA-TGAACTGGATTTC---------TGCG-ACGGCATA-ACA-----TTCGCTAAAGTGTGATCATTT-------T--GAC----G-TC-A-T-AGCATGCTCTC--TGGCAGTGT-C-CAGA--TTTCAGAAAATGAGC-TTCA----GC--CTTTCCA----CGA-ACTCAAA--ACAGTAGACCACGGCAAT--AGC----CAA---CTTAT----AAAC-CG-AAACTCTAAACCCGGCTCGGGGC-TCAA-CGG-GCAA--TAAAGCGAC-GCCGAGTG-C-TATAAA-CCCGGC--GGCTCGACCGG---CTCACAGGCCGA---T----GCTA--------TATAACTTCA-GGCCGTGC--T--------ATAAGAACGCGC-------CGGGTCACTC------GGG----------------C--CTCTAAAACC--C--GCGGC-TGGCCGGTGCTACCCGG----CGAACCCTGC-TGGGTCAA---ACTGCT-GAC--AATCA-------CAT-----GACCTC-TTTGCA-TACAAAGTTGCACTCAGGTTGAACCtgcactccttcactatcgacttcagacctgaccagagaacaatggctcagaacacgctagaattgcgtggaacactcagaaaaagtgaataacatggtatcagaaagaagacgagaatgcaacaagattcttgagcgaagtaaagaatagacaagagtacaggaggctacattaacagcaactgacgggcccagactgaaggttatttcctagccagaatcctaggtagaccaggctttggaattcttcccggagtcatcaagattaacgggactggaaactgggccactacaaatgctcaggaatcaacctccggcatgacaaaagaattttggcgatcattacacgaacactagatcggaattgatttaacacgcattaatgtgctgagtaagtgagatggaatcatacacagtcctgctgagaagctggatagaactgtacgggaaaaaatctagaaccttagggaaggcactcactcctgattcacgctactaatacggcgtgctaacactctgcggtgaacgacttggtcgcggatgcccagaaaaacgattatcagaccataagaacaggattatcccgcagactagttgacagaatatctgccgattaaccagcagagaaaaacaatcagaagggaccttgcacacagtggcggggaaattagaaactggatcagtggactgagtccggaagaacaagcggagatcgatgaataatgattggacatcccgtacctggccaaacctgctgtgaagagacgagaaaacgtagagagtgtggatccccgcacctactaagaacccgctaaaaagaagcaaaaactgagccgaaagtaaaaccttgaactgtttttttatagccacggtggtttaagcccttagggtgaggctgttttatgtcttggtgtgtttataaacatgtaagacttagatacttggtgttagtctttattatgcaagaattaagcacaggaatgaactggatttctgcgacggcataacattcgctaaagtgtgatcattttgacgtcatagcatgctctctggcagtgtccagatttcagaaaatgagcttcagcctttccacgaactcaaaacagtagaccacggcaatagccaacttataaaccgaaactctaaacccggctcggggctcaacgggcaataaagcgacgccgagtgctataaacccggcggctcgaccggctcacaggccgatgctatataacttcaggccgtgctataagaacgcgccgggtcactcgggcctctaaaacccgcggctggccggtgctacccggcgaaccctgctgggtcaaactgctgacaatcacatgacctctttgcatacaaagttgcactcaggttgaaccacgaggacggcgcgtttagtatact
gi|3 : gagcagagtcggacataataatacagcacatttactcccagatcatgacttacactatatctagagaatctgcgttgaagccggacatttgtaaaaataaacaccatgacaggcctttttgacggggctactttaaaacaaaataatgagtgaccgacacatacatgaagtgggcaagcagctagctttgagagcgacataagattcgataagctagtgcTTCTTGTAACCCGACC----AGTTGTACCGTGGAATACACGTGAGATTTGTGTAAGGCAGCGGATGATCGCTCCAGCGGGAAAGTACA-G-AGCAATTTCGGGCGAATTACTTTGTTCT-TCAGTG-TATAGATAGATTTTTCTGTCT-TAGACACTGGGTA-TACATCTGAGGGAAACTA---T-TTAATGGTACATAATTGATGT-TCGC-CATCGA--AATTTC-GCCTCGGA-CCATATC--AAAAA--TCGTGGCGGTTT---GATT--ATTCTTAGTATTGCGTCCCATCTTATTTCG-AACTCGTAGTTGGAAG--ATAT--CTTG-CCTGCTGATTTGTTTTTCTAGAGAGAACCCATGTAAC-TG--AAAAG-TCGT--CTGATGATAACCGTATCCACTAGTATAGTCTTAGCCAGT-TAT-ATAGTGTTTAATGAACGGCTACTACAAacgaggacggcgcgtttagtatact
gi|3 : TATGGAGAAATTGTTTGAGTGCATAGCAGGCAGGATGTGGGAAAAACCGTTAC-GTGATGCGTTTTCAGGGGACGAAGAG-CT-CACA--AATTTACCTAGCAGCACA-TACATCACACGAACTATATGAGCTTACACCGTGTTTCTATCAGAAGCAGCAGCCTATC-ACAT-TTAGAAGTGCTGACCAGTTGCTACTCAACTAGCATATAATTAGGTAGTCTATGCACAAGCGTCCCTTTTTATATGTGCTACTTTTAAA-AAAATGGAAATTTATATACCG---CAAA--GTCGGACTGTAAGCAGGCAGCTCTGTCACGGATAACACCCATTGCTCTCGTTAAGTGCATCCGTCCAAATTGGCCACT-----AG---ACTCG--------GCATACTAGAGGTAGAACTCTCAATTGG-CATCCATGCCTACGCT---TGGC-A--CTGAAGC-CTACA-GATCCCT---CGGAA-AAAA-CTCAATT-GGC--CCAT-------G--GCCAGTCTG--------GAC--------GA-G-C--CAGT-C-----AC---T-GGGGA--AA--CC--ACTGTGCACAAT-Gtgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaattggccactagactcggcatactagaggtagaactctcaattggcatccatgcctacgcttggcactgaagcctacagatccctcggaaaaaactcaattggcccatggccagtctggacgagccagtcactggggaaaccactgtgcacaatgtcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|3 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagc----TGGCCA--C-TAGACTCGGCATA----CTAGAGGTAG-AACT-CTCAATT-GGCATCCAT-------GC--CTACGCTT--------GGCA-C----TGAAGCCTACAGATC-----CC---TCGGAAA--AAACTC--AATTGGC-CCAT-G-GCCAGT------CT----------------GGACG------------AGC---C-----AGTCACTGGGGAAA--------CC--ACTGTGCACAATGTCAAGATGGGCA-G-T----CTACCTCTGGCT------TCTCAAATGAAGC-AGATAAG--AA-GCAA-AATCGAGCTCTGGGCGACTCTAATC----AAATCGGGGTCAC-ATCCTGACTATCA-A--CCTGACCTAGAGAGCACATGGGCTGCGTAGAAACTTCAGC-TAGAAATTCGTGGTA-AAGTATGCAGAGCTTAGAGTACACG-AAAACACGTGGACGACTACCATTCATTTGTGG-TAA-CAGATACAA-TAGTCTCGAAAAAATGCAAACCACA-GATTGTCTTGAGCGCA---CGTTATAATGTACGCGGGAGGTTACAG-GCCAGGTTACTATTTTGTATCACAGCAGACTGATAAGAAAGGCAAGAATTGAGtcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|4 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaatGAGTACAAACCGTTAG-AGA-TGTG-GAATCTGCCCGTACCTAAACAAAGT-GAAGAACC-GCCTAAAAAGAAGA-A-GAAACTTAGCCGAAAGTAAAAA-----CG-G-GACTGTGCTTT----AGT----G------AAC--TG-TTT---------TTAT--GCTT-AACTGT-TTTTA-----------AAAC-ATTGTGCATTGTTCTTGTTTTCCTTAATAAACATGTAAA-CTTAAAC-CTTG-TGTTATTCTT----------------------GGGATTTA-------------TTAT-GGATTTA--------ATACACA-GGAATACACA-AAATTTCACAG------GAT--TTT-----A-T--G-CCTTGGATCGA-T--ACACATTC-C--TA--AGTGTGC-TACATTTTTT------TGA-C-GTCATAATGCTTTTCTCCAAGTACAG-C--CAAATGACGT-------CA-CAATAGAGC-TCGCGCT--CCTGTGCTAAAACCTGCA--CTCTAAACTAGCCCAGCGGC---AA-TA---CACTCTA---CGCCATAC----G-C-TCTGAACCCCGGCCGGGCCT-ACCGG---C--------------------CTC--------TA-AAC--TC-ACCCGTGCTAT--------A---------GC-------CCGGACACCCCTGCAGGGGTCAAA-----------TCGCTT---GACCAATCAGCAT
gi|4 : a----GCTC--------TG-AAC--CCCGGCCGGGCC-T--------A------------------CCGGC---CTCT---------AAA-----------C---TC----ACC--C----GT----GCTATAGC--CC--GGACAC---CCCTGCAGGGGTCAA---ATCGCTTGAC-CAATCA------GCATT----GACCTCATTTGCA-TAAAAAG-TGCACTCA-GTTG-ACCTCCCTATCGAGGGtgacctcatttgcataaaaagtgcactcagttgacctccctatcgaggg
gi|5 : agagtacaaaccgttagagatgtggaatctgcccgtacctaaacaaagtgaagaaccgcctaaaaagaagaagaaacttagccgaaagtaaaaacgggactgtgctttagtgaactgtttttatgcttaactgtttttaaaacattgtgcattgttcttgttttccttaataaacatgtaaacttaaaccttgtgttattcttgggatttattatggatttaatacacaggaatacacaaaatttcacaggattttatgccttggatcgatacacattcctaagtgtgctacatttttttgacgtcataatgcttttctccaagtacagccaaatgacgtcacaatagagctcgcgctcctgtgctaaaacctgcactctaaactagcccagcggcaatacactctacgccatacAAGAAGA-A-GAAACTGAGCCGAAAGTAGAGATGGTGCTTG-AACTGTTTT--TAT-GCT----G------AAC--TG-TTT---------AAA--------AACTG------------ATTTAAAAAC-ATTGTGCATTG-T-------TCTTTAATAAACATGT-AAACTTAAAC-CTT-GTGTTAGTCTTTATTATGCACAGGAATA-CAC-AGGATTTAATACAGAGGAA-T--------------------ACACA-A-GAATTTTACT-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-TAAACACATTC-C--TA--AGTGTGC-TACAG-TTTT------TGA-C-GTCATAATG---CTCTCCAAG-------TCCAAA--AC---------CG--AAT--GAC-TT-CACAATCCTGTGCTAAACCTGC-A--CTCTCAACTAGGCCAGCGGCTT-AACTAGACCGACCTA---TAAA--CCG---GCC-TCTAAA-CCCGGTC-GGCTC-ACCGGCT-CT---AGACCCGGCCG----GCTCACCGGTTATA-AAC--CA-GGCCGGGC--TCTAGACACG---------GCCGGGTAGCCGGCGACCCCTG-TGG---CAAAACTGCGCATGTC--CTT---GACC--CCAGCGTCCTAGATATTG-AACC--A----C---CCAT-C-GGG
gi|6 : GAA-CTGGGCCTCTACAGATCC-CTGCAG-AAC------GAGC-T----CCG-GCC-AGGAAC-AAAGAA--GATTTTG-CGGA-TCATTACCACCACCAC-------TAGGA-CGGGGATCG--TTAGAAC-CGCATTAATTGTGCTGAGGTAA-TGAGATGGG-AA-TC-TACCGAGCAGTTCC-TG-CTGAAGAAGCTATTGGCACGTTTCCCA-AGAACTGGGTATCACGTGGGCAAAAATCTA-GTAACagcgtttatac
gi|6 : ATT-ACGCTACTAACATCCTC--CGTGCTA-CACCT-TGCGGTTGTTCGGCCAAA------CAGGACATTTG-GTCGCatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatattacgctactaacatcctccgtgctacaccttgcggttgttcggccaaacaggacatttggtcgc
gi|7 : gaactgggcctctacagatccctgcagaacgagctccggccaggaacaaagaagattttgcggatcattaccaccaccactaggacggggatcgttagaaccgcattaattgtgctgaggtaatgagatgggaatctaccgagcagttcctgctgaagaagctattggcacgtttcccaagaactgggtatcacgtgggcaaaaatctagtaacatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatATGA-CGCG--AGAGG--AAATACAGGCAATA-----GAG-GAATGA------TTCACCAGTTCTA-GGA-AGAT-----TATGGATAGACG--AAGTA-TA-GTCTGGCGGAA--TAAAGTGTTA---GTACAGA---GATGCGTCGCGCATCGATTTA---CAGC--TGGA-C-G-ATCTAAAAAA--T--TGGGTGTTTTATGAGTTCAT-----GTATTGCGTCC---CC-AT---GGAAC-----GTAGGAAGGAATATTAC-TGGCC-GCCG-------TTTTTAG-GCGA---CATGT-A--TGAAAAAAGACC-T--CTGG-------------TATCAGTCTGGTTGTA-CAAGTGCTT-ATA-CG-TTATTGAACGGC-ACTGCTAA
gi|8 : gcCC-AGGCTTAGGATTTTTTTTCCCGGAGATCCCAGAATCAGAAGATGTAACA-GGGATGGAA-CTGGGTCTTTACAA--CC-CT-CAG-AAT------GAGCCT----CCG-GCC-ATAAAC-AAAGAA--GATTTTG-C-GA-TCATTTCCACGA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGA-GTAA-TGAGATTGGAAA-TCATACC--ACAG-TCC-T-ACTGAAGAAGC---TGG----------A-AAAACTG------AC-----C-----TCTA-A-AAACCTAGG-AAGGAA-TA-CACCCCAGATT-ACGCTACTAAC-----C--CGTGCTA-CAC-T-TGCGG------AC--AAtgaaagatttggg
gi|9 : gacCC-ATGACCCAAAGAATAGATTTTG-C-TACTCATTTCCACC--CACGTTAGGTTA-GA-C-GGGATAG--TC--AAC-AGAATTAA-TGTGTGGAGA-GA-TGAGATTGGAAA-CCATACA--AGAA-TCC-T-ACTGAAGAAGA---TGA----------A-GGAGCTG------AC---GGCAAAAAT--------CCCAAGG-ACGG-A-----ACT---------CGCCACTAAC-----C--CATGCTA-CAC-C-TGTGG------AG--AAATACTAGTAGGAC-ATTG-GT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CCCCCAAACTTGACCCAAGTTAATATATAACTTATTTGTTACCTGCGTCCGCCCGTTAGGTACTAG
Unaligned ( gi|18 ): GCATCCTAGATATTGAACCGGCCATCAGGACAGTTTATA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 2222 2222 1 222 11 1111 11 111 33333 1 333333 1 1 1 33333 1 11 1 11 2222222222222 222 222 22 1 22222 111 11111 11 22222 222 333333333 333333333333333333333 111 2222 1 1 444444444 1 1 222 2222 1 2222 77777777777777777 1 1 1 1 1 1 11 1 222 11 11 1 1111 1 222222222 1 1 22 1 11 111 1 333333333 1111 11 11 3333333 1 111111111 111 222222 3333 1 111 11 11 11 1 11 55555555555555555555555555555555555555555555555555555555555555555555555555555 222 1 3333333333 111111 1 3333333 111 11 888888888888888888888888888888888888888 11 3333333333333 11 11 111111111111111111111111111111111111111111111111111111111111111 33333333 11 1 11 1 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 11 1 2222 11 1 1 222 111111 555555555555 66666666666666666666666666666666666 22222 222 1 333333 222222 22 4444444 11 1 11 2222 2222222222222 11 22222 1 1 11 1 11 1 44444444444 1 11111 222222 1111 2222222222222 1 111 22 1111 3333333333 33333333333 111 1 444444 33333333 111 3333333333333333333 11 22222 3333333 2222 1 1 2222222222222 1 2222 11 333 22 1 1 1 1 1 1 1 222 1 1 222 1 11 1 1 1 2 1 11 66666666666 1 1 1111 22222 333333333333 11 22222222 88888888888888888888888888888888888 333333333 1 2222222222222 11 55555555555555555555555 111 11 222222 11 33333333333333333 2222 11 11 11 222222 1 1 111 888888888888888888888888888888 11 3333333333 1111111 444444444444444444444444444 111 55555555555555555555555555555555555 666666666666666666666666666666 11111111 66666666666666666666666666666 11 11 33333333333 1 222 22 5555555555555 1 11 1
lowQualScore : 111 3333 3333 22 5 111 77 8888 6 88 555 33333 3 888888 88 3 3 3 33333 3 88 3 22 5555555555555 333 333 55 3 7 66666 999 88888 88 77777 888 333 333333333 777777777777777777777 1 333 7777 3 3 555555555 2 3 333 4444 7 3 2222 55555555555555555 1 3 3 3 3 3 7 3 1 88 1 5 222 1 88 1 66 5 5555 3 7 555555555 7 3 3 00 0 22 777 0 1 666666666 4444 33 88 2222222 0 3 888888888 55 777 0 22 3 444444 9 2 3333 0 444 33 6 88 55 2 00 99999999999999999999999999999999999999999999999999999999999999999999999999999 7 333 1 3 3333333333 888888 0 4 7777777 444 8 8 8 88 444444444444444444444444444444444444444 8 5 11 1111111111111 8 11 0 11 0 0 666666666666666666666666666666666666666666666666666666666666666 7777 0 11111111 33 0 11 66 0 1 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 88 3 7777 44 2 6 3 333 999999 222222222222 77777777777777777777777777777777777 22222 333 3 333333 666666 00 5555555 7 44 6 3 44 1111 9999999999999 44 22222 1 3 3 88 0 1 1 33 0 66666666666 333 0 8 3 22222 8 8 333333 7777 8 6 1 6 99 6 6 6 7 6666666666666 6 6 6 99 99 6 6 3 6 3 3 6 111 0 8 8 55 0 4444 5555555555 8 3 33333333333 0 444 0 888888 2 3 8 88888888 8 000 1111111111111111111 0 11 8 6 7 6 33333 0 1111111 6 8888 1 3 3 6 7777777777777 3 3 6 8888 88 777 7 00 7 3 5 5 5 5 1 1 5 5 111 1 5 5 1 111 5 88 5 5 1 7 7 3 6 3 7 88 00000000000 3 3 9999 2 3 00000 0 8 11 0 3 8 444444444444 11 8 99999999 00000000000000000000000000000000000 1 2 222222222 3 3 3 0 55 0 5 9999999999999 0 11 3 55555555555555555555555 444 6 66 1 6 333333 99 55555555555555555 0 2222 4 8 11 11 8 99 888888 0 0 3 666 3 3 333333333333333333333333333333 33 2222222222 0 8 0 7777777 888 000000000000000000000000000 444 999 8 8 8 88888888888888888888888888888888888 6 99 6 555555555555555555555555555555 6 33333333 00000000000000000000000000000 11 0 22 66666666666 1 8 0 333 7 00 4444444444444 7 7 3 44 3 7 1
lowQualScore : ... .... .... .. . ... .. .... . .. ... ..... . ...... .. . . . ..... . .. . .. ............. ... ... .. . . ..... ... ..... .. ..... ... ... ......... ..................... . ... .... . . ......... . . ... .... . . .... ................. . . . . . . . . . .. . . ... . .. . .. . .... . . ......... . . . .. . .. ... . . ......... .... .. .. ....... . . ......... .. ... . .. . ...... . . .... . ... .. . .. .. . .. ............................................................................. . ... . . .......... ...... . . ....... ... . . . .. ....................................... . . .. ............. . .. . .. . . ............................................................... .... . ........ .. . .. .. . . . ............................................................................................... . .. . .... .. . . . ... ...... ............ ................................... ..... ... . ...... ...... .. ....... . .. . . .. .... ............. .. ..... . . . .. . . . .. . ........... ... . . . ..... . . ...... .... . . . . .. . . . . ............. . . . .. .. . . . . . . . ... . . . .. . .... .......... . . ........... . ... . ...... . . . ........ . ... ................... . .. . . . . ..... . ....... . .... . . . . ............. . . . .... .. ... . .. . . . . . . . . . . ... . . . . ... . .. . . . . . . . . . .. ........... . . .... . . ..... . . .. . . . ............ .. . ........ ................................... . . ......... . . . . .. . . ............. . .. . ....................... ... . .. . . ...... .. ................. . .... . . .. .. . .. ...... . . . ... . . .............................. .. .......... . . . ....... ... ........................... ... ... . . . ................................... . .. . .............................. . ........ ............................. .. . .. ........... . . . ... . .. ............. . . . .. . . .
lowQualScore : 000 0000 0000 00 5 000 55 0000 7 33 333 33333 3 333333 33 3 3 3 33333 3 33 3 77 7777777777777 333 333 33 3 3 77777 000 77777 33 77777 777 333 777777777 000000000000000000000 0 000 0000 3 3 333333333 0 3 333 3333 3 3 7777 33333333333333333 0 3 3 3 3 3 3 3 0 55 0 5 000 0 55 0 55 0 7777 3 3 777777777 3 3 3 77 0 55 555 0 2 555555555 2222 88 00 5555555 8 2 555555555 00 555 2 88 0 222222 8 5 0000 0 555 88 7 33 77 0 33 77777777777777777777777777777777777777777777777777777777777777777777777777777 3 333 0 3 9999999999 888888 0 2 2222222 000 0 0 0 66 888888888888888888888888888888888888888 0 0 00 8888888888888 0 00 8 00 8 8 222222222222222222222222222222222222222222222222222222222222222 2222 2 88888888 88 0 88 55 2 0 0 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 33 3 7777 77 0 7 3 333 000000 777777777777 33333333333333333333333333333333333 00000 333 3 333333 000000 77 7777777 3 00 7 3 77 7777 0000000000000 00 33333 0 3 3 33 0 2 0 22 0 00000000000 888 0 0 2 22222 0 0 000000 0000 0 7 5 7 22 7 7 7 8 7777777777777 7 7 7 22 22 7 7 7 7 2 3 7 777 8 0 0 44 8 8888 0000000000 0 2 00000000000 8 222 0 000000 5 5 0 44444444 0 000 3333333333333333333 8 66 0 7 3 7 33333 7 7777777 7 3333 0 3 3 7 7777777777777 3 7 7 3333 33 777 3 77 3 3 5 0 0 0 0 0 0 0 000 0 0 0 0 000 0 00 0 5 0 3 3 3 7 3 3 33 77777777777 3 3 0000 5 2 00000 8 0 44 8 8 0 000000000000 00 0 00000000 00000000000000000000000000000000000 0 5 888888888 2 2 2 0 00 8 6 6666666666666 8 66 8 00000000000000000000000 888 5 55 0 0 000000 00 88888888888888888 8 4444 6 0 00 00 0 00 888888 0 0 2 222 2 2 555555555555555555555555555555 88 5555555555 2 8 8 5555555 888 000000000000000000000000000 000 222 0 2 0 99999999999999999999999999999999999 7 22 7 333333333333333333333333333333 7 00000000 66666666666666666666666666666 22 8 22 55555555555 0 8 0 333 3 00 3333333333333 3 3 3 77 3 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACCGCACAGTCGTACCGTGGANNACACGTGAGACTTGTGTAAGGCAGCGGATGA-CGCGCCAGCGG--AAATACAGG-AGTA-----GAG-GAATTA------TCNACCAGTG-TA-AGA-AGAT-----TATGT-TAGACG--AGGTA-TACGTCTGGGGGAA--TAAAGT-TTA---GTACAGA---GATGC-TCGC-CATCGATTAA---C-GC--CGGA-CCG-ATC--AAAAA--T--TGGCGGTTT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTNGGAAGGAATAT--C-TG-CC-GCCG-------TTTCTAG-GCGA---CATGT-AC-TGAAAAAAG-CC-T--CTGA-------------CACCAGTATAGTNTTA-CCAGT-TTT-ATA-CG-TTATTGAACGGC-ACTNCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGAAATTGTTTNGGTGCATAGCAGGCNGGATGTGGGAAAAACCGNTANAGTGATGCGTTTCCGGGGGACGAAGAG-CT-GAC-ATAA--TACATA-CAGCACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAATA--CCATGCACA---GCCCCTTTTTACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACAC--AAACATGAA--GTGGGCAGGCAGCCCTA----G----------------CTCGTTAAG-GCG-------AAATTGGCCACCATG--A---GACTCG---AGCC-GCGCACT---GGGAAAAANCTCAATT-GGCATCATTGC--A-GC----TGGC-A--C-GAGGC-CGGCA-A----CT---GGGAA-AAAA-CTCAA-TTGGCA-CCAT------CGCTGCCANGC--TG--------GGCA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACCC--AATTGGCACCAT-GNGCCAGT--GC-GCTG------------AGAGGACGCGTN-TGGC---AGC---CGANT-AGNCACTGGGGAAA---AAC--CC--ACTG-GCACNATG-CGAGNTGGGCA-CTG-AGCTAGC-CTGGATGG-AACTCT---ACGA-GC-ATANAAG--AA-GCAA-AGCCG--CTC--GGC-ACTCTA--C----CACTC-T---TCAC-ATC--GACT-TCA-A--CCTGACCTAGAGAGCACAT-GGCT---CAGAAAA--CAG-CTAGAAATTCGTGG-A-CA------AGAGCTCAGAA-----GAAA----GTGAACGA-TAACA--------TGG-T-A-CAGA---AA-AAGACT---GAGAATGCAA--C-A-AGATT-TCTTGAGCGAA---A---AGAATAGACG-GGGA-GTTACAG-G--AGGCTACTACATTG----ACAGCAGACTGA-AAGAAAGGCCAAGACTGAGGGTTNTTACCTA-GCCA-GAATCCTA--CAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGCAACG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GATTTTG-C-GA-TCATTTCCACNA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TGACTGAAGAAGC---TGG----------A-AGAACTG------AC--GGGCAAAAATCTA-G-AACCCTAGG-AAGG-A-T--CACTCCAGATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AA-GCAACGTTTATCCGC----AGACCAGTA----AANA-AAGAT-TATCCCGCAG-ACCCCAGT--A-AGAA-ATCCGGC----CGATAAACC--AGCAGAA-CGAAACACAAACA-AAGGGATCCT-TGCTACACAGTGGCGGGNAAATTAGGNACTGGATCAGTGGACTGAGTCCGNAAGGAACAAGCGGAGATCGATGGAANGATGATTGGGCATCCCGCTACCTGGCCCAAAACCCGCTGTGAAGAGANGAGTACAAACCGTTAG-AGA-TGTG-GAATC--CCCGCACCTAA------C-GAAGAACC-GCC-AAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTG-AACTGTTTTTTTAT-GC----TG------AAC--TG-T--------TTAAAC-GCTTGAACTGT-TTTTA-G-CTGTTTAAAAACTGTTNTGCATTGTT-------TCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATGCACAGGAATA-CAC-AGGATTTAATACACNGGAA-TTNAC-GGATTTA--------ATACA-A-GGAATACACA-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-T-AACACGTTC-C--TA--AGTGTGC-TACA--TTTT------TGA-C-GTCATAATGC--CTCTCCAAGTGCGA-NTTCAAA--ACG--------CG-CAAT--AGC-TT-CAC---CCTGTGCTAAAACTCG-A--CTCTAAACTAGGCCAGCGGC-T-AA-TAG-CCGACCTA---CGAC-TCCG---G-C-TCTAAA-CCCGGCCGGGCTC-ACCGG---CT---AGACCCG---G----GCTC--------TA-AAC--CC-GGCCGGGC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAAA-----------C--CTC---GACC--CCAGCGTCCTAGCTATTGCAACC--G----C---CCNTGC-GGGGTCAA---ACCGCTTGAC-CAATCA------GCA----TTGACCTCATTTGCA-TAAAAAGTTGCACTCA-GTTGAACCTCCCTATNGAGGG
Reference ( family-3 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACCGCACAGTCGTACCGTGGANNACACGTGAGACTTGTGTAAGGCAGCGGATGA-CGCGCCAGCGG--AAATACAGG-AGTA-----GAG-GAATTA------TCNACCAGTG-TA-AGA-AGAT-----TATGT-TAGACG--AGGTA-TACGTCTGGGGGAA--TAAAGT-TTA---GTACAGA---GATGC-TCGC-CATCGATTAA---C-GC--CGGA-CCG-ATC--AAAAA--T--TGGCGGTTT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTNGGAAGGAATAT--C-TG-CC-GCCG-------TTTCTAG-GCGA---CATGT-AC-TGAAAAAAG-CC-T--CTGA-------------CACCAGTATAGTNTTA-CCAGT-TTT-ATA-CG-TTATTGAACGGC-ACTNCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGAAATTGTTTNGGTGCATAGCAGGCNGGATGTGGGAAAAACCGNTANAGTGATGCGTTTCCGGGGGACGAAGAG-CT-GAC-ATAA--TACATA-CAGCACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAATA--CCATGCACA---GCCCCTTTTTACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACAC--AAACATGAA--GTGGGCAGGCAGCCCTA----G----------------CTCGTTAAG-GCG-------AAATTGGCCACCATG--A---GACTCG---AGCC-GCGCACT---GGGAAAAANCTCAATT-GGCATCATTGC--A-GC----TGGC-A--C-GAGGC-CGGCA-A----CT---GGGAA-AAAA-CTCAA-TTGGCA-CCAT------CGCTGCCANGC--TG-------AGGCA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACCC--AATTGGCACCAT-GNGCCAGT--GC-GCTG------------AGAGGACGCGTN-TGGC---AGC---CGANT-AGNCACTGGGGAAA---AAC--CC--ACTG-GCACNATG-CGAGNTGGGCA-CTG-AGCTAGC-CTGGATGG-AACTCT---ACGA-GC-ATANAAG--AA-GCAA-AGCCG--CTC--GGC-ACTCTA--C----CACTC-T---TCAC-ATC--GACT-TCA-A--CCTGACCTAGAGAGCACAT-GGCT---CAGAAAA--CAG-CTAGAAATTCGTGG-A-CA------AGAGCTCAGAA-----GAAA----GTGAACGA-TAACA--------TGG-T-A-CAGA---AA-AAGACT---GAGAATGCAA--C-A-AGATT-TCTTGAGCGAA---A---AGAATAGACG-GGGA-GTTACAG-G--AGGCTACTACATTG----ACAGCAGACTGA-AAGAAAGGCCAAGACTGAGGGTTNTTACCTA-GCCA-GAATCCTA--CAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGCAACG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GATTTTG-C-GA-TCATTTCCACNA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TGACTGAAGAAGC---TGG----------A-AGAACTG------AC--GGGCAAAAATCTA-G-AACCCTAGG-AAGG-A-T--CACTCCAGATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AA-GCAACGTTTATCCGC----AGACCAGTA----AANA-AAGAT-TATCCCGCAG-ACCCCAGT--A-AGAA-ATCCGGC----CGATAAACC--AGCAGAA-CGAAACACAAACA-AAGGGATCCT-TGCTACACAGTGGCGGGNAAATTAGGNACTGGATCAGTGGACTGAGTCCGNAAGGAACAAGCGGAGATCGATGGAANGATGATTGGGCATCCCGCTACCTGGCCCAAAACCCGCTGTGAAGAGANGAGTACAAACCGTTAG-AGA-TGTG-GAATC--CCCGCACCTAA------C-GAAGAACC-GCC-AAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTG-AACTGTTTTTTTAT-GC----TG------AAC--TG-T--------TTAAACAGCTTGAACTGT-TTTTA-G-CTGTTTAAAAACTGTTNTGCATTGTT-------TCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATGCACAGGAATA-CAC-AGGATTTAATACACNGGAA-TTNAC-GGATTTA--------ATACA-A-GGAATACACA-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-T-AACACGTTC-C--TA--AGTGTGC-TACA--TTTT------TGA-C-GTCATAATGC--CTCTCCAAGTGCGA-NTTCAAA--ACG--------CG-CAAT--AGC-TT-CAC---CCTGTGCTAAAACTCG-A--CTCTAAACTAGGCCAGCGGC-T-AA-TAG-CCGACCTA---CGAC-TCCG---G-C-TCTAAA-CCCGGCCGGGCTC-ACCGG---CT---AGACCCG---G----GCTC--------TA-AAC--CC-GGCCGGGC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAAA-----------C--CTC---GACC--CCAGCGTCCTAGCTATTGCAACC--G----C---CCNTGC-GGGGTCAA---ACCGCTTGAC-CAATCA------GCA----TTGACCTCATTTGCA-TAAAAAGTTGCACTCA-GTTGAACCTCCCTATNGAGGG
gi|1 : TTCTTGT---CTGACCGCACAGTCAT----TGGATAACACG-GAGACTT-T-TAAG--AGCAGA----CGCGCCAACGG--ATAAACAGA-AGTA-----GAG-GAATTA------TCAACCAGTG-TA-AGA-AGAT-----TATGT-TAGACG--AGATGCTATATCTGGG-------AAAAT-TTA---GTACAGA---GATG--TCGC-CATCGATTAA---C-GC--TGGAGCCG-ATC--AAAAAATT--TGGTG--TT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTGGGAAAGA-TAT--T-TG-CC-GC-G-------TTT--AG-GCGA---CATGT-ACCTGAAAAAAA-CC-TTTCTAA-------------CA--AGTACACGATTA-CCAGT-TTTTATA-CG-T-ATTGAACGGC-ACTTCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAG--ATTGTTTTGG-GC-T-GCAGGCTGGATGTGGG--AAACCGGTAAAGTAATGCGTTTCCGGGAGA-GAAGAG-CTCGACAATAA--TACA------CACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGTATT-GAA--GCCGGACATTTTGTA-------AAAAAATAA--AAATA--CCAT-CACA---GCCCCTTTTTA-G-GGCCTACTTT-AAACAAAAT----ATGAGTG-ACACACACAAAAACAT-AA--GT--GCA--CTGCCCTA----G----------------TTCGTTAAG-GC---------AATTGGCCACCATGCCAGCTGACCTG---AGCC--CGCACT---GGGAAAAACCCTAATTGGGCATCATTGC--A-GC----TGGC-A--C-GAGGC-CAGC--A----CT---GGAAA-AAAAGCTCAATTTGGC--CCAC------CACTGCCAAGC--TG--------CGCA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACC----ATTGGCACT----TGCCAGTAGAC-ACTG------------AGA--ACCATTT-TGGC----GC---TGAGTCAGGCACTGGGGAAA---AAC--CC--ATTG-GCACTGTG-CCAGCT-GGCACCTG-AGCCAGCACTGGAGAA-AATTTT---ACGG-GCTATAAAA---AG-GCAG-AGCC---CTC---GC-ACTCT--------CACTC-T---TCAC-ATC--GACT-TCA-GACCCTGACCT-GAGA--ACAT-GGCT---CAGAAAA--CAGCCTAGAAATTCGTGG-A-CA------AGAGCTCAGAAG----GAAA----GTGAATAA--AACA--------TGGCT-A-CAGA---AA-AAGACT---G-GAATGCAA--CAA-AGATT-TCTTGAGCGAA---A---AG-ATAGACA-GGGA-GCT-CAGCG--AGGCT--TACATGG----ACAGCAG-CTGA-AA-AAAGGCCAAGACTGAGAGTTTTTACCTACTCCACGAATCCTA--CAGACC-AGGCTTGGGATTTTTTT-CCCGGAG-TC---G---CAAAAGATGC-ACGCGGACTGGAA-CT-GGCCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GA-TTTG-C-GA-TCATTACCACCA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGATAA-TGAGATTGG-AA-TCATACC--AC-G-TCCTTGCCTGAAGAAGC----GG----------A-A-AACTG------AC--GGGCAAAAATCTAGG-AACCCTAGG-AAGG-A-TTACACTCCAGATT-ACGCTA-TAAC-----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AAGGCAGCATTTATCCGC----AGACCAGTA----AAGA-AAGATGTAT-CCGCAG-A--CCAGT--A-AGAA-ATCGGGC----CGATAAACC--AGCAGAAGTAAAACACAAACA-AAGGGATCCTGTGCTACA-AGT-GC-GGTAAATTAGGCACT-GATCAGT-GACTG---TCGCAAGGAACAAGCGGAGATCGATGGAAGGATGATTGGG---CCCGCTACCTGGCTCAAAACCCG-TGTG-AGAGAAGAGTACAAACCGTTAGCAGATTGTGAGAATC--CCCGCACC--A------CTGAAGAACC-GCC-TAAAAGAAGAGAAGAAA-TGAGCCG-AAGTAAAAA-----CTTGAAACTGTTTTTTTAT-GC----TGTTTTAAAAC--TG-TTTTCATTGTTAAAAAACTTGAACTGTATTTTATG-CTGTTTAAAAACTGTTTTACATTGTT-------TCTTTAATAAACATGTAAAACTAAAAC-CTTGGTGTTAGTCTTTA-TATGCAGAGGAATACCACAAGGATTTTATACACTGGAATTTCAC-AGATTTATGCGATCGATACA-G-GGAATACACAGGGAATACAC-G------GATA-TTT-----ATT--G-C----GATCGA----------TT-C--TA--AGTGTGC-TACA--TTTT------TGA-CAGTCATAATGC--CTC-CCAAGTGCGATTTTCAGA--A--------------AAT--AGCTTT-CAC---CCTTTTCCACAACTCA-A--AGCGAAAGTAGACCA-CGGC---AA-TAG-CCAACCTA---TAGC-TCCG---G-CATCTAAA-CCCGGCCATGCTT-A-------TT---A-ACCCG---G----ACTC--------TA-AAC--CC-GGCC-GGC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAAA--------------CTT---GACC--C---CGTCCTAGCTATTGCAACC--G----C---CCAATC-GAGGCCAGACCACCGCTTGACTCAATCAGAAGCCGCATTGCTTGACCTCATTTGCAGTAAAAAGT--CACTCA-GTTGAACCTCCCTATGGAGGG
gi|10 : taatgaaaggcttcgaacacctgtatttataggtgaaaaaaaggtaatgcattcaaccgtgtctgtgcatcacgtgatcaacccccttgtgcgttagtgtgcgttagcattcaTTACCTA-GCCA-GAATATGT--CAAACCCAGCCTTAGGAGTTTTTT-CCCGGAG-TC---A---CA--ATATGCAACG-GAACTGGAA-CTAGGCCTCTACAA--CA-CG-AAG-AATGCATCGGAACCTGAGGCCGCGCCAATGAGC-AAAGAA--GATTTTG-C-GA-TCATTTCCACG------------TA-GA-C-GGGATCA--TG--AAC-AGAATTAA-TGTGCTG-GGTGA-TGAAATTGG-AACTCATACC--Agggctata
gi|11 : G--AAA------CAGGAAAATCATGTCTTCGGATTGCTCCCCAGACAC-GCGAGATTAATTCGCCATAAGACCAGTAACACAATA-GAGAT-TATCACGCAATACCCCGTT--A-AGAA-ATTCGGCATCGCAGTAATTCGAAACTGAATCGAAAC-TAAAC--AAGGACTCCT-g
gi|12 : GATTTTACTG------AAT--TTTTTACAA-TTAG-C----GATCGAAT-AACACATTT-CCGTA--AGTGTGCTTACA--
gi|13 : gagatatacacttactgcga-A--CTCTAAACTAGGC--------T-AA--AG-C-GCTCTA---C-AC--CCG---G-T-TATAAA-CCCGACCGGGCTC-ACCGGGCTTT---AAACCTG---GCCGTGCTA--------TA-AAC--CC-GGCTGGAC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAaactatatttcattacttaattgaaacgattttccatacatgctctacaaaccaaaaacc
gi|14 : cctgcGA-CTTACACC-TGTATAT---AGAAG-AAC-------CTGCGT-TT-GAA--GCCGGACATTTT-TA-------AATAAA-AA--AAAAA--CCATGCACA---GCC--------------CTACTTTAAAACAAAAT----ATGAGTG-AC--ACAC--
gi|16 : -----CTTG-AACTG--TTTTCAT-GCTTATTG------AAC--TG-T--------TTAAA
gi|17 : gggactgtgTTTATTATGCACAGGAATA-CAC-AGGATTTAAAACACTGGacattgtgc
gi|2 : AGAGTCG-GAC-ATAA--TA-ATA-CAGCACATTTACTCCCA-GATC-AT--GA-CTTACAC--TATATCT---AGAGA-ATC-------T-GCGT-T--GAA--GCCGGACATTT-GTA-------AA--AATAA--A--CA--CCATG-ACA---GGCCTTTTTGACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACAC--ATACATGAA--GTGGGCAAGCAG--CTA----G----------------CT--TTGAGAGCG-------A----------CATA--A---GATTCGATAAGCTAGTGC-CT---GGGAAAAAACTCAATT-GGCACCATGCC--A-GCAGTATGGC-AACT-GAGAC-CAGC--A----CT---GGGAAGAAAA-CTCAA-TTGGCA-CCATGGGATGCGCTGCCACCT--TGAAAAAAAAGACG-CGTCATGG-CCC--CAA--CCGAATGCCTTT-GGGAA--AAAACCAGAATTGGCACCATCGAGTTAG---GCAACTG-------------GAGGTCGCGGA-TGGT---AACTCGCGACT-AGA-----GGTAAATGCAATGGCC--GCTG-GCACACTA-CGA
gi|2 : gagc----CT---GGGAA-AAAA-CTCAA-TTGGCA-CCAT----------GCCA-GCAGTA-------TGGCAAC----TGA-GAC--CAG--C-----AC---T-GGGAAGAAAACTC--AATTGGCACCAT-GGG---AT--GC-GCTGCCACCTTGAAAAAAAAGACGCGTCATGGCCCCAAC---CGAAT--GCCTTTGGGAAAA---AAC--CAGAATTG-GCACCAT--CGAGTTAGGCAACTGGAGGTCGC---GGATGGTAACTC----GCGA--C--TAGAGGTAAATGCAATGGCCG--CT---GGC-ACACTA--CGATGCACTCCT---TCACTATC--GACT-TCAGA--CCTGACC-AGAGAACA-AT-GGCT---CAGAACA--C-G-CTAGAATTGCGTGG-AACA----------CTCAGAA------AAA----GTGAA----TAACA--------TGG-T-ATCAGA---AAGAAGAC----GAGAATGCAA--C-A-AGATT--CTTGAGCGAAGTAA---AGAATAGACA-AG-A-GT-ACAG-G--AGGCTAC---ATTA----ACAGCA-ACTGA-CGG----GCCCAGACTGAAGGTTATTTCCTA-GCCA-GAATCCTAGGTAGACC-AGGCTTTGGAATTCTT--CCCGGAG-TC---AT--CA--AGAT-TAACG-GGACTGGAAACTGGGCCACTACAA--ATGCT-CAGGAAT------CAACCT----CCG-GC--ATGACA-AAAGAA----TTTTGGC-GA-TCATT-ACACGAACAC-------TA-GATC-GGAATTGATTT--AACACGCATTAA-TGTGCTGAG-TAAGTGAGAT-GG-AA-TCATAC---ACAG-TCC-TG-CTGA-GAAGC---TGG----------ATAGAACTGT-----AC--GGGAAAAAATCTA-G-AACCTTAGGGAAGGCACT--CACTCCTGATTCACGCTACTAATA----CGGCGTGCTAACAC-TCTGCGG------TG--AA-------C--GAC--TTG-GTCGC-GGAT-GCCC---AGA-AA---AACGATTATC-------AGACCA-TA----AGAACAGGAT-TATCCCGCAG-ACT--AGTTGACAGAATATCTG-C----CGATTAACC--AGCAGA---GAAAAACAATCAGAAGGGA-CCT-TGC-ACACAGTGGCGGGGAAATTAGAAACTGGATCAGTGGACTGAGTCCGGAAG-AACAAGCGGAGATCGATG-AATAATGATTGGACATCCCG-TACCTGGCC--AAACCTGCTGTGAAGAGACGAG---AAAACGT-AG-AGAGTGTG-GA-TC--CCCGCACCTA-------C-TAAGAACCCGCT-AAAAAGAAGC-AA-AAACTGAGCCGAAAGTAAAAC-----CTTG-AACTGTTTTTTTATAGC----C--------ACGGTGGT--------TTAAGCC-CTTAGGGTG------A-GGCTGTTTTA----TGTCTTG----GTG-------TGTTTA-TAAACATGTAAGACTTAGATACTTGGTGTTAGTCTTTATTATGCA-------------AGAATT-AA-GCACAGGAA-TGAACTGGATTTC---------TGCG-ACGGCATA-ACA-----TTCGCTAAAGTGTGATCATTT-------T--GAC----G-TC-A-T-AGCATGCTCTC--TGGCAGTGT-C-CAGA--TTTCAGAAAATGAGC-TTCA----GC--CTTTCCA----CGA-ACTCAAA--ACAGTAGACCACGGCAAT--AGC----CAA---CTTAT----AAAC-CG-AAACTCTAAACCCGGCTCGGGGC-TCAA-CGG-GCAA--TAAAGCGAC-GCCGAGTG-C-TATAAA-CCCGGC--GGCTCGACCGG---CTCACAGGCCGA---T----GCTA--------TATAACTTCA-GGCCGTGC--T--------ATAAGAACGCGC-------CGGGTCACTC------GGG----------------C--CTCTAAAACC--C--GCGGC-TGGCCGGTGCTACCCGG----CGAACCCTGC-TGGGTCAA---ACTGCT-GAC--AATCA-------CA----T-GACCTC-TTTGCA-TACAAAGTTGCACTCAGGTTGAACCtgcactccttcactatcgacttcagacctgaccagagaacaatggctcagaacacgctagaattgcgtggaacactcagaaaaagtgaataacatggtatcagaaagaagacgagaatgcaacaagattcttgagcgaagtaaagaatagacaagagtacaggaggctacattaacagcaactgacgggcccagactgaaggttatttcctagccagaatcctaggtagaccaggctttggaattcttcccggagtcatcaagattaacgggactggaaactgggccactacaaatgctcaggaatcaacctccggcatgacaaaagaattttggcgatcattacacgaacactagatcggaattgatttaacacgcattaatgtgctgagtaagtgagatggaatcatacacagtcctgctgagaagctggatagaactgtacgggaaaaaatctagaaccttagggaaggcactcactcctgattcacgctactaatacggcgtgctaacactctgcggtgaacgacttggtcgcggatgcccagaaaaacgattatcagaccataagaacaggattatcccgcagactagttgacagaatatctgccgattaaccagcagagaaaaacaatcagaagggaccttgcacacagtggcggggaaattagaaactggatcagtggactgagtccggaagaacaagcggagatcgatgaataatgattggacatcccgtacctggccaaacctgctgtgaagagacgagaaaacgtagagagtgtggatccccgcacctactaagaacccgctaaaaagaagcaaaaactgagccgaaagtaaaaccttgaactgtttttttatagccacggtggtttaagcccttagggtgaggctgttttatgtcttggtgtgtttataaacatgtaagacttagatacttggtgttagtctttattatgcaagaattaagcacaggaatgaactggatttctgcgacggcataacattcgctaaagtgtgatcattttgacgtcatagcatgctctctggcagtgtccagatttcagaaaatgagcttcagcctttccacgaactcaaaacagtagaccacggcaatagccaacttataaaccgaaactctaaacccggctcggggctcaacgggcaataaagcgacgccgagtgctataaacccggcggctcgaccggctcacaggccgatgctatataacttcaggccgtgctataagaacgcgccgggtcactcgggcctctaaaacccgcggctggccggtgctacccggcgaaccctgctgggtcaaactgctgacaatcacatgacctctttgcatacaaagttgcactcaggttgaaccacgaggacggcgcgtttagtatact
gi|3 : gagcagagtcggacataataatacagcacatttactcccagatcatgacttacactatatctagagaatctgcgttgaagccggacatttgtaaaaataaacaccatgacaggcctttttgacggggctactttaaaacaaaataatgagtgaccgacacatacatgaagtgggcaagcagctagctttgagagcgacataagattcgataagctagtgcTTCTTGTAACCCGACC----AGTTGTACCGTGGAATACACGTGAGATTTGTGTAAGGCAGCGGATGATCGCTCCAGCGGGAAAGTACA-G-AGCAATTTCGGGCGAATTACTTTGTTCT-TCAGTG-TATAGATAGATTTTTCTGTCT-TAGACACTGGGTA-TACATCTGAGGGAAACTA---T-TTAATGGTACATAATTGATGT-TCGC-CATCGA--AATTTC-GCCTCGGA-CCATATC--AAAAA--TCGTGGCGGTTT---GATT--ATTCTTAGTATTGCGTCCCATCTTATTTCG-AACTCGTAGTTGGAAG--ATAT--CTTG-CCTGCTGATTTGTTTTTCTAGAGAGAACCCATGTAAC-TG--AAAAG-TCGT--CTGATGATAACCGTATCCACTAGTATAGTCTTAGCCAGT-TAT-ATAGTGTTTAATGAACGGCTACTACAAacgaggacggcgcgtttagtatact
gi|3 : TATGGAGAAATTGTTTGAGTGCATAGCAGGCAGGATGTGGGAAAAACCGTTAC-GTGATGCGTTTTCAGGGGACGAAGAG-CT-CAC-A-AATTTACCTAGCAGCACA-TACATCACACGAACTATATGAGCTTACACCGTGTTTCTATCAGAAGCAGCAGCCTATC-ACAT-TTAGAAGTGCTGACCAGTTGCTACTCAACTAGCATATAATTAGGTAGTCTATGCACAAGCGTCCCTTTTTATATGTGCTACTTTTAAA-AAAATGGAAATTTATATACCG---C--AAAGTCGGACTGTAAGCAGGCAGCTCTGTCACGGATAACACCCATTGCTCTCGTTAAGTGCATCCGTCCAAATTGGCCACT-----A---GACTCG--------GCATACTAGAGGTAGAACTCTCAATT-GGCATCCATGCCTACGCT---TGGC-A--CTGAAGC-CTACA-GATCCCT---CGGAA-AAAA-CTCAA-TTGGC--CCAT-------G--GCCAGTC--TG--------GAC--------GA-G-C--CAGT-C-----AC---T-GGGGA--AA--CC--ACTGTGCACAAT-Gtgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaattggccactagactcggcatactagaggtagaactctcaattggcatccatgcctacgcttggcactgaagcctacagatccctcggaaaaaactcaattggcccatggccagtctggacgagccagtcactggggaaaccactgtgcacaatgtcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|3 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagc----TGGCCA--C-TAGACTCGGCATA----CTAGAGGTAG-AACT-CTCAA-TTGGCATCCAT-------GC--CTACGC--TT--------GGCA-C----TGAAGCCTACAGATC-----CC---TCGGAAA--AAACTC--AATTGGC-CCAT-G-GCCAGT------CTG----------------GACG------------AGC---C-----AGTCACTGGGGAAA--------CC--ACTGTGCACAATGTCAAGATGGGCA-GT----CTACCTCTGGCT------TCTCAAATGAAGC-AGATAAG--AA-GCAA-AATCGAGCTCTGGGCGACTCTAATC----AAATC-GGGGTCAC-ATCCTGACTATCA-A--CCTGACCTAGAGAGCACATGGGCTGCGTAGAAACTTCAG-CTAGAAATTCGTGGTA-AAGTATGCAGAGCTTAGAGTACACGAAAACACGTGGACGACTACCATTCATTTGTGG-TAA-CAGATACAA-TAGTCTCGAAAAAATGCAAACC-ACAGATTGTCTTGAGCGCA---CGTTATAATGTACGCGGGAGGTTACAG-GCCAGGTTACTATTTTGTATCACAGCAGACTGATAAGAAAGGCAAGAATTGAGtcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|4 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaatGAGTACAAACCGTTAG-AGA-TGTG-GAATCTGCCCGTACCTAAACAAAGT-GAAGAACC-GCCTAAAAAGAAGA-A-GAAACTTAGCCGAAAGTAAAAA-----CG-G-GACTGTGCTTT----AG----TG------AAC--TG-T--------TTTTAT-GCTT-AACTGT-TTTTA-----------AAAC-ATTGTGCATTGTTCTTGTTTTCCTTAATAAACATGTAAA-CTTAAAC-CTTG-TGTTATTCTT----------------------GGGATTTA-------------TTAT-GGATTTA--------ATACACA-GGAATACACA-AAATTTCACAG------GAT--TTT-----A-T--G-CCTTGGATCGA-T--ACACATTC-C--TA--AGTGTGC-TACATTTTTT------TGA-C-GTCATAATGCTTTTCTCCAAGTACAG-C--CAAATGACGT-------CA-CAATAGAGC-TCGCGCT--CCTGTGCTAAAACCTGCA--CTCTAAACTAGCCCAGCGGC---AA-TA---CACTCTA---CGCCATAC----G-C-TCTGAACCCCGGCCGGGCCT-ACCGG---C--------------------CTC--------TA-AAC--TC-ACCCGTGCTAT--------A---------GC-------CCGGACACCCCTGCAGGGGTCAAA-----------TCGCTT---GACCAATCAGCAT
gi|4 : a----GCTC--------TG-AAC--CCCGGCCGGGCC-T--------A------------------CCGGC---CTCT---------AAA-----------C---TC----ACC--C----GT----GCTATAGC--CC--GGACAC---CCCTGCAGGGGTCAA---ATCGCTTGAC-CAATCA------GCA----TTGACCTCATTTGCA-TAAAAAG-TGCACTCA-GTTG-ACCTCCCTATCGAGGGtgacctcatttgcataaaaagtgcactcagttgacctccctatcgaggg
gi|5 : agagtacaaaccgttagagatgtggaatctgcccgtacctaaacaaagtgaagaaccgcctaaaaagaagaagaaacttagccgaaagtaaaaacgggactgtgctttagtgaactgtttttatgcttaactgtttttaaaacattgtgcattgttcttgttttccttaataaacatgtaaacttaaaccttgtgttattcttgggatttattatggatttaatacacaggaatacacaaaatttcacaggattttatgccttggatcgatacacattcctaagtgtgctacatttttttgacgtcataatgcttttctccaagtacagccaaatgacgtcacaatagagctcgcgctcctgtgctaaaacctgcactctaaactagcccagcggcaatacactctacgccatacAAGAAGA-A-GAAACTGAGCCGAAAGTAGAGATGGTGCTTG-AACTGTTTT--TAT-GC----TG------AAC--TG-T--------TTAAA-------AACTG------------ATTTAAAAAC-ATTGTGCATTG-T-------TCTTTAATAAACATGT-AAACTTAAAC-CTT-GTGTTAGTCTTTATTATGCACAGGAATA-CAC-AGGATTTAATACAGAGGAA-T--------------------ACACA-A-GAATTTTACT-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-TAAACACATTC-C--TA--AGTGTGC-TACAG-TTTT------TGA-C-GTCATAATG---CTCTCCAAG-------TCCAAA--AC---------CG--AAT--GAC-TT-CACAATCCTGTGCTAAACCTGC-A--CTCTCAACTAGGCCAGCGGCTT-AACTAGACCGACCTA---TAAA--CCG---GCC-TCTAAA-CCCGGTC-GGCTC-ACCGGCT-CT---AGACCCGGCCG----GCTCACCGGTTATA-AAC--CA-GGCCGGGC--TCTAGACACG---------GCCGGGTAGCCGGCGACCCCTG-TGG---CAAAACTGCGCATGTC--CTT---GACC--CCAGCGTCCTAGATATTG-AACC--A----C---CCAT-C-GGG
gi|6 : GAA-CTGGGCCTCTACAGATCC-CTGCAG-AAC------GAGC-T----CCG-GCC-AGGAAC-AAAGAA--GATTTTG-CGGA-TCATTACCACCACCAC-------TAGGA-CGGGGATCG--TTAGAAC-CGCATTAATTGTGCTGAGGTAA-TGAGATGGG-AA-TC-TACCGAGCAGTTCC-TG-CTGAAGAAGCTATTGGCACGTTTCCCA-AGAACTGGGTATCACGTGGGCAAAAATCTA-GTAACagcgtttatac
gi|6 : ATT-ACGCTACTAACATCCTC--CGTGCTA-CACCT-TGCGGTTGTTCGGCCAAA------CAGGACATTTG-GTCGCatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatattacgctactaacatcctccgtgctacaccttgcggttgttcggccaaacaggacatttggtcgc
gi|7 : gaactgggcctctacagatccctgcagaacgagctccggccaggaacaaagaagattttgcggatcattaccaccaccactaggacggggatcgttagaaccgcattaattgtgctgaggtaatgagatgggaatctaccgagcagttcctgctgaagaagctattggcacgtttcccaagaactgggtatcacgtgggcaaaaatctagtaacatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatATGA-CGCG--AGAGG--AAATACAGGCAATA-----GAG-GAATGA------TTCACCAGTTCTA-GGA-AGAT-----TATGGATAGACG--AAGTA-TA-GTCTGGCGGAA--TAAAGTGTTA---GTACAGA---GATGCGTCGCGCATCGATTTA---CAGC--TGGA-C-G-ATCTAAAAAA--T--TGGGTGTTTTATGAGTTCAT-----GTATTGCGTCC---CC-AT---GGAAC-----GTAGGAAGGAATATTAC-TGGCC-GCCG-------TTTTTAG-GCGA---CATGT-A--TGAAAAAAGACC-T--CTGG-------------TATCAGTCTGGTTGTA-CAAGTGCTT-ATA-CG-TTATTGAACGGC-ACTGCTAA
gi|8 : gcCC-AGGCTTAGGATTTTTTTTCCCGGAGATCCCAGAATCAGAAGATGTAACA-GGGATGGAA-CTGGGTCTTTACAA--CC-CT-CAG-AAT------GAGCCT----CCG-GCC-ATAAAC-AAAGAA--GATTTTG-C-GA-TCATTTCCACGA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGA-GTAA-TGAGATTGGAAA-TCATACC--ACAG-TCC-T-ACTGAAGAAGC---TGG----------A-AAAACTG------AC-----C-----TCTA-A-AAACCTAGG-AAGGAA-TA-CACCCCAGATT-ACGCTACTAAC-----C--CGTGCTA-CAC-T-TGCGG------AC--AAtgaaagatttggg
gi|9 : gacCC-ATGACCCAAAGAATAGATTTTG-C-TACTCATTTCCACC--CACGTTAGGTTA-GA-C-GGGATAG--TC--AAC-AGAATTAA-TGTGTGGAGA-GA-TGAGATTGGAAA-CCATACA--AGAA-TCC-T-ACTGAAGAAGA---TGA----------A-GGAGCTG------AC---GGCAAAAAT--------CCCAAGG-ACGG-A-----ACT---------CGCCACTAAC-----C--CATGCTA-CAC-C-TGTGG------AG--AAATACTAGTAGGAC-ATTG-GT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CCCCCAAACTTGACCCAAGTTAATATATAACTTATTTGTTACCTGCGTCCGCCCGTTAGGTACTAG
Unaligned ( gi|18 ): GCATCCTAGATATTGAACCGGCCATCAGGACAGTTTATA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 2222 2222 1 222 11 1111 11 111 33333 1 333333 1 1 1 33333 1 11 1 11 2222222222222 222 222 22 1 22222 111 11111 11 22222 222 333333333 333333333333333333333 111 2222 1 1 444444444 1 1 222 2222 1 2222 77777777777777777 1 1 1 1 1 1 11 1 222 11 11 1 1111 1 222222222 1 1 22 1 11 111 1 333333333 1111 11 11 3333333 1 111111111 111 222222 3333 1 111 11 11 11 1 11 55555555555555555555555555555555555555555555555555555555555555555555555555555 222 1 3333333333 111111 1 3333333 111 11 6666666666666666666666666666666666666 11 3333333333333 11 11 111111111111111111111111111111111111111111111111111111111111111 33333333 11 1 11 1 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 11 1 2222 11 1 1 222 111111 555555555555 66666666666666666666666666666666666 22222 222 1 333333 222222 22 4444444 11 1 11 2222 2222222222222 11 22222 1 1 11 1 11 1 44444444444 1 11111 222222 1111 2222222222222 1 111 22 1111 3333333333 33333333333 111 1 444444 33333333 111 3333333333333333333 11 22222 3333333 2222 1 1 2222222222222 1 2222 11 333 22 1 1 1 1 1 1 1 222 1 1 222 1 11 1 1 1 2 1 11 66666666666 1 1 1111 22222 333333333333 11 7777777777777777777777777777777777777777777777 333333333 1 2222222222222 11 55555555555555555555555 111 11 222222 11 33333333333333333 2222 11 11 11 222222 1 1 111 888888888888888888888888888888 11 3333333333 1111111 444444444444444444444444444 111 55555555555555555555555555555555555 666666666666666666666666666666 11111111 66666666666666666666666666666 11 11 33333333333 1 222 22 5555555555555 1 11 1
lowQualScore : 111 3333 3333 22 5 111 77 8888 6 88 555 33333 3 888888 88 3 3 3 33333 3 88 3 22 5555555555555 333 333 55 3 7 66666 999 88888 88 77777 888 333 333333333 777777777777777777777 1 333 7777 3 3 555555555 2 3 333 4444 7 3 2222 55555555555555555 1 3 3 3 3 3 7 3 1 88 1 5 222 1 88 1 66 5 5555 3 7 555555555 7 3 3 00 0 22 777 0 1 666666666 4444 33 88 2222222 0 3 888888888 55 777 0 22 3 444444 9 2 3333 0 444 33 6 88 55 2 00 99999999999999999999999999999999999999999999999999999999999999999999999999999 7 333 1 3 3333333333 888888 0 4 7777777 444 8 8 8 88 7777777777777777777777777777777777777 8 5 11 1111111111111 8 11 0 11 0 0 666666666666666666666666666666666666666666666666666666666666666 7777 0 11111111 33 0 11 66 0 1 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 88 3 7777 44 2 6 3 333 999999 222222222222 77777777777777777777777777777777777 22222 333 3 333333 666666 00 5555555 7 44 6 3 44 1111 9999999999999 44 22222 1 3 3 88 0 1 1 33 0 66666666666 333 0 8 3 22222 8 8 333333 7777 8 6 1 6 99 6 6 6 7 6666666666666 6 6 6 99 99 6 6 3 6 3 3 6 111 0 8 8 55 0 4444 5555555555 8 3 33333333333 0 444 0 888888 2 3 8 88888888 8 000 1111111111111111111 0 11 8 6 7 6 33333 0 1111111 6 8888 1 3 3 6 7777777777777 3 3 6 8888 88 777 7 00 7 3 5 5 5 5 1 1 5 5 111 1 5 5 1 111 5 88 5 5 1 7 7 3 6 3 7 88 00000000000 3 3 9999 2 3 00000 0 8 11 0 3 8 444444444444 11 8 6666666666666666666666666666666666666666666666 1 2 222222222 3 3 3 0 55 0 5 9999999999999 0 11 3 55555555555555555555555 444 6 66 1 6 333333 99 55555555555555555 0 2222 4 8 11 11 8 99 888888 0 0 3 666 3 3 333333333333333333333333333333 33 2222222222 0 8 0 7777777 888 000000000000000000000000000 444 999 8 8 8 88888888888888888888888888888888888 6 99 6 555555555555555555555555555555 6 33333333 00000000000000000000000000000 11 0 22 66666666666 1 8 0 333 7 00 4444444444444 7 7 3 44 3 7 1
lowQualScore : ... .... .... .. . ... .. .... . .. ... ..... . ...... .. . . . ..... . .. . .. ............. ... ... .. . . ..... ... ..... .. ..... ... ... ......... ..................... . ... .... . . ......... . . ... .... . . .... ................. . . . . . . . . . .. . . ... . .. . .. . .... . . ......... . . . .. . .. ... . . ......... .... .. .. ....... . . ......... .. ... . .. . ...... . . .... . ... .. . .. .. . .. ............................................................................. . ... . . .......... ...... . . ....... ... . . . .. ..................................... . . .. ............. . .. . .. . . ............................................................... .... . ........ .. . .. .. . . . ............................................................................................... . .. . .... .. . . . ... ...... ............ ................................... ..... ... . ...... ...... .. ....... . .. . . .. .... ............. .. ..... . . . .. . . . .. . ........... ... . . . ..... . . ...... .... . . . . .. . . . . ............. . . . .. .. . . . . . . . ... . . . .. . .... .......... . . ........... . ... . ...... . . . ........ . ... ................... . .. . . . . ..... . ....... . .... . . . . ............. . . . .... .. ... . .. . . . . . . . . . . ... . . . . ... . .. . . . . . . . . . .. ........... . . .... . . ..... . . .. . . . ............ .. . .............................................. . . ......... . . . . .. . . ............. . .. . ....................... ... . .. . . ...... .. ................. . .... . . .. .. . .. ...... . . . ... . . .............................. .. .......... . . . ....... ... ........................... ... ... . . . ................................... . .. . .............................. . ........ ............................. .. . .. ........... . . . ... . .. ............. . . . .. . . .
lowQualScore : 000 0000 0000 00 5 000 55 0000 7 33 333 33333 3 333333 33 3 3 3 33333 3 33 3 77 7777777777777 333 333 33 3 3 77777 000 77777 33 77777 777 333 777777777 000000000000000000000 0 000 0000 3 3 333333333 0 3 333 3333 3 3 7777 33333333333333333 0 3 3 3 3 3 3 3 0 55 0 5 000 0 55 0 55 0 7777 3 3 777777777 3 3 3 77 0 55 555 0 2 555555555 2222 88 00 5555555 8 2 555555555 00 555 2 88 0 222222 8 5 0000 0 555 88 7 33 77 0 33 77777777777777777777777777777777777777777777777777777777777777777777777777777 3 333 0 3 9999999999 888888 0 2 2222222 000 0 0 0 66 2222222222222222222222222222222222222 0 0 00 8888888888888 0 00 8 00 8 8 222222222222222222222222222222222222222222222222222222222222222 2222 2 88888888 88 0 88 55 2 0 0 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 33 3 7777 77 0 7 3 333 000000 777777777777 33333333333333333333333333333333333 00000 333 3 333333 000000 77 7777777 3 00 7 3 77 7777 0000000000000 00 33333 0 3 3 33 0 2 0 22 0 00000000000 888 0 0 2 22222 0 0 000000 0000 0 7 5 7 22 7 7 7 8 7777777777777 7 7 7 22 22 7 7 7 7 2 3 7 777 8 0 0 44 8 8888 0000000000 0 2 00000000000 8 222 0 000000 5 5 0 44444444 0 000 3333333333333333333 8 66 0 7 3 7 33333 7 7777777 7 3333 0 3 3 7 7777777777777 3 7 7 3333 33 777 3 77 3 3 5 0 0 0 0 0 0 0 000 0 0 0 0 000 0 00 0 5 0 3 3 3 7 3 3 33 77777777777 3 3 0000 5 2 00000 8 0 44 8 8 0 000000000000 00 0 9999999999999999999999999999999999999999999999 0 5 888888888 2 2 2 0 00 8 6 6666666666666 8 66 8 00000000000000000000000 888 5 55 0 0 000000 00 88888888888888888 8 4444 6 0 00 00 0 00 888888 0 0 2 222 2 2 555555555555555555555555555555 88 5555555555 2 8 8 5555555 888 000000000000000000000000000 000 222 0 2 0 99999999999999999999999999999999999 7 22 7 333333333333333333333333333333 7 00000000 66666666666666666666666666666 22 8 22 55555555555 0 8 0 333 3 00 3333333333333 3 3 3 77 3 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACCGCACAGTCGTACCGTGGANNACACGTGAGACTTGTGTAAGGCAGCGGATGA-CGCGCCAGCGG--AAATACAGG-AGTA-----GAG-GAATTA------TCNACCAGTG-TA-AGA-AGAT-----TATGT-TAGACG--AGGTA-TACGTCTGGGGGAA--TAAAGT-TTA---GTACAGA---GATGC-TCGC-CATCGATTAA---C-GC--CGGA-CCG-ATC--AAAAA--T--TGGCGGTTT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTNGGAAGGAATAT--C-TG-CC-GCCG-------TTTCTAG-GCGA---CATGT-AC-TGAAAAAAG-CC-T--CTGA-------------CACCAGTATAGTNTTA-CCAGT-TTT-ATA-CG-TTATTGAACGGC-ACTNCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGAAATTGTTTNGGTGCATAGCAGGCNGGATGTGGGAAAAACCGNTANAGTGATGCGTTTCCGGGGGACGAAGAG-CT-GAC-ATAA--TACATA-CAGCACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAATA--CCATGCACA---GCCCCTTTTTACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACAC--AAACATGAA--GTGGGCAGGCAGCCCTA----G----------------CTCGTTAAG-GCG-------AAATTGGCCACCATG--A---GACTCG---AGCC-GCGCACT---GGGAAAAANCTCAATT-GGCATCATTGC--A-GC----TGGC-A--C-GAGGC-CGGCA-A----CT---GGGAA-AAAA-CTCAA-TTGGCA-CCAT------CGCTGCCANGCTG-A------GGCA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACCC--AATTGGCACCAT-GNGCCAGT--GC-GCTG------------AGAGGACGCGTN-TGGC---AGC---CGANT-AGNCACTGGGGAAA---AAC--CC--ACTG-GCACNATG-CGAGNTGGGCA-CTG-AGCTAGC-CTGGATGG-AACTCT---ACGA-GC-ATANAAG--AA-GCAA-AGCCG--CTC--GGC-ACTCTA--C----CACTC-T---TCAC-ATC--GACT-TCA-A--CCTGACCTAGAGAGCACAT-GGCT---CAGAAAA--CAG-CTAGAAATTCGTGG-A-CA------AGAGCTCAGAA-----GAAA----GTGAACGA-TAACA--------TGG-T-A-CAGA---AA-AAGACT---GAGAATGCAA--C-A-AGATT-TCTTGAGCGAA---A---AGAATAGACG-GGGA-GTTACAG-G--AGGCTACTACATTG----ACAGCAGACTGA-AAGAAAGGCCAAGACTGAGGGTTNTTACCTA-GCCA-GAATCCTA--CAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGCAACG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AACG------AGCCT----CCG-GCCA-TGAAC-AAAGAA--GATTTTG-C-GA-TCATTTCCACNA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TGACTGAAGAAGC---TGG----------A-AGAACTG------AC--GGGCAAAAATCTA-G-AACCCTAGG-AAGG-A-T--CACTCCAGATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AA-GCAACGTTTATCCGC----AGACCAGTA----AANA-AAGAT-TATCCCGCAG-ACCCCAGT--A-AGAA-ATCCGGC----CGATAAACC--AGCAGAA-CGAAACACAAACA-AAGGGATCCT-TGCTACACAGTGGCGGGNAAATTAGGNACTGGATCAGTGGACTGAGTCCGNAAGGAACAAGCGGAGATCGATGGAANGATGATTGGGCATCCCGCTACCTGGCCCAAAACCCGCTGTGAAGAGANGAGTACAAACCGTTAG-AGA-TGTG-GAATC--CCCGCACCTAA------C-GAAGAACC-GCC-AAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTG-AACTGTTTTTTTAT-GC----TG------AAC--TG-TTT---------AAACGCTTGAACTGT-TTTTA-G-CTGTTTAAAAACTGTTNTGCATTGTT-------TCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATGCACAGGAATA-CAC-AGGATTTAATACACNGGAA-TTNAC-GGATTTA--------ATACA-A-GGAATACACA-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-T-AACACGTTC-C--TA--AGTGTGC-TACA--TTTT------TGA-C-GTCATAATGC--CTCTCCAAGTGCGA-NTTCAAA--ACG--------CG-CAAT--AGC-TT-CAC---CCTGTGCTAAAACTCG-A--CTCTAAACTAGGCCAGCGGC-T-AA-TAG-CCGACCTA---CGAC-TCCG---G-C-TCTAAA-CCCGGCCGGGCTC-ACCGG---CT---AGACCCG---G----GCTC--------TA-AAC--CC-GGCCGGGC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAAA-----------C--CTC---GACC--CCAGCGTCCTAGCTATTGCAACC--G----C---CCNTGC-GGGGTCAA---ACCGCTTGAC-CAATCA------GCA----TTGACCTCATTTGCA-TAAAAAGTTGCACTCA-GTTGAACCTCCCTATNGAGGG
Reference ( family-3 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACCGCACAGTCGTACCGTGGANNACACGTGAGACTTGTGTAAGGCAGCGGATGA-CGCGCCAGCGG--AAATACAGG-AGTA-----GAG-GAATTA------TCNACCAGTG-TA-AGA-AGAT-----TATGT-TAGACG--AGGTA-TACGTCTGGGGGAA--TAAAGT-TTA---GTACAGA---GATGC-TCGC-CATCGATTAA---C-GC--CGGA-CCG-ATC--AAAAA--T--TGGCGGTTT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTNGGAAGGAATAT--C-TG-CC-GCCG-------TTTCTAG-GCGA---CATGT-AC-TGAAAAAAG-CC-T--CTGA-------------CACCAGTATAGTNTTA-CCAGT-TTT-ATA-CG-TTATTGAACGGC-ACTNCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGAAATTGTTTNGGTGCATAGCAGGCNGGATGTGGGAAAAACCGNTANAGTGATGCGTTTCCGGGGGACGAAGAG-CT-GAC-ATAA--TACATA-CAGCACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAATA--CCATGCACA---GCCCCTTTTTACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACAC--AAACATGAA--GTGGGCAGGCAGCCCTA----G----------------CTCGTTAAG-GCG-------AAATTGGCCACCATG--A---GACTCG---AGCC-GCGCACT---GGGAAAAANCTCAATT-GGCATCATTGC--A-GC----TGGC-A--C-GAGGC-CGGCA-A----CT---GGGAA-AAAA-CTCAA-TTGGCA-CCAT------CGCTGCCANGCTG--------GGCA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACCC--AATTGGCACCAT-GNGCCAGT--GC-GCTG------------AGAGGACGCGTN-TGGC---AGC---CGANT-AGNCACTGGGGAAA---AAC--CC--ACTG-GCACNATG-CGAGNTGGGCA-CTG-AGCTAGC-CTGGATGG-AACTCT---ACGA-GC-ATANAAG--AA-GCAA-AGCCG--CTC--GGC-ACTCTA--C----CACTC-T---TCAC-ATC--GACT-TCA-A--CCTGACCTAGAGAGCACAT-GGCT---CAGAAAA--CAG-CTAGAAATTCGTGG-A-CA------AGAGCTCAGAA-----GAAA----GTGAACGA-TAACA--------TGG-T-A-CAGA---AA-AAGACT---GAGAATGCAA--C-A-AGATT-TCTTGAGCGAA---A---AGAATAGACG-GGGA-GTTACAG-G--AGGCTACTACATTG----ACAGCAGACTGA-AAGAAAGGCCAAGACTGAGGGTTNTTACCTA-GCCA-GAATCCTA--CAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGCAACG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AACG------AGCCT----CCG-GCCA-TGAAC-AAAGAA--GATTTTG-C-GA-TCATTTCCACNA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TGACTGAAGAAGC---TGG----------A-AGAACTG------AC--GGGCAAAAATCTA-G-AACCCTAGG-AAGG-A-T--CACTCCAGATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AA-GCAACGTTTATCCGC----AGACCAGTA----AANA-AAGAT-TATCCCGCAG-ACCCCAGT--A-AGAA-ATCCGGC----CGATAAACC--AGCAGAA-CGAAACACAAACA-AAGGGATCCT-TGCTACACAGTGGCGGGNAAATTAGGNACTGGATCAGTGGACTGAGTCCGNAAGGAACAAGCGGAGATCGATGGAANGATGATTGGGCATCCCGCTACCTGGCCCAAAACCCGCTGTGAAGAGANGAGTACAAACCGTTAG-AGA-TGTG-GAATC--CCCGCACCTAA------C-GAAGAACC-GCC-AAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTG-AACTGTTTTTTTAT-GC----TG------AAC--TG-TTT---------AAACGCTTGAACTGT-TTTTA-G-CTGTTTAAAAACTGTTNTGCATTGTT-------TCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATGCACAGGAATA-CAC-AGGATTTAATACACNGGAA-TTNAC-GGATTTA--------ATACA-A-GGAATACACA-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-T-AACACGTTC-C--TA--AGTGTGC-TACA--TTTT------TGA-C-GTCATAATGC--CTCTCCAAGTGCGA-NTTCAAA--ACG--------CG-CAAT--AGC-TT-CAC---CCTGTGCTAAAACTCG-A--CTCTAAACTAGGCCAGCGGC-T-AA-TAG-CCGACCTA---CGAC-TCCG---G-C-TCTAAA-CCCGGCCGGGCTC-ACCGG---CT---AGACCCG---G----GCTC--------TA-AAC--CC-GGCCGGGC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAAA-----------C--CTC---GACC--CCAGCGTCCTAGCTATTGCAACC--G----C---CCNTGC-GGGGTCAA---ACCGCTTGAC-CAATCA------GCA----TTGACCTCATTTGCA-TAAAAAGTTGCACTCA-GTTGAACCTCCCTATNGAGGG
gi|1 : TTCTTGT---CTGACCGCACAGTCAT----TGGATAACACG-GAGACTT-T-TAAG--AGCAGA----CGCGCCAACGG--ATAAACAGA-AGTA-----GAG-GAATTA------TCAACCAGTG-TA-AGA-AGAT-----TATGT-TAGACG--AGATGCTATATCTGGG-------AAAAT-TTA---GTACAGA---GATG--TCGC-CATCGATTAA---C-GC--TGGAGCCG-ATC--AAAAAATT--TGGTG--TT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTGGGAAAGA-TAT--T-TG-CC-GC-G-------TTT--AG-GCGA---CATGT-ACCTGAAAAAAA-CC-TTTCTAA-------------CA--AGTACACGATTA-CCAGT-TTTTATA-CG-T-ATTGAACGGC-ACTTCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAG--ATTGTTTTGG-GC-T-GCAGGCTGGATGTGGG--AAACCGGTAAAGTAATGCGTTTCCGGGAGA-GAAGAG-CTCGACAATAA--TACA------CACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGTATT-GAA--GCCGGACATTTTGTA-------AAAAAATAA--AAATA--CCAT-CACA---GCCCCTTTTTA-G-GGCCTACTTT-AAACAAAAT----ATGAGTG-ACACACACAAAAACAT-AA--GT--GCA--CTGCCCTA----G----------------TTCGTTAAG-GC---------AATTGGCCACCATGCCAGCTGACCTG---AGCC--CGCACT---GGGAAAAACCCTAATTGGGCATCATTGC--A-GC----TGGC-A--C-GAGGC-CAGC--A----CT---GGAAA-AAAAGCTCAATTTGGC--CCAC------CACTGCCAAGCTG--------CGCA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACC----ATTGGCACT----TGCCAGTAGAC-ACTG------------AGA--ACCATTT-TGGC----GC---TGAGTCAGGCACTGGGGAAA---AAC--CC--ATTG-GCACTGTG-CCAGCT-GGCACCTG-AGCCAGCACTGGAGAA-AATTTT---ACGG-GCTATAAAA---AG-GCAG-AGCC---CTC---GC-ACTCT--------CACTC-T---TCAC-ATC--GACT-TCA-GACCCTGACCT-GAGA--ACAT-GGCT---CAGAAAA--CAGCCTAGAAATTCGTGG-A-CA------AGAGCTCAGAAG----GAAA----GTGAATAA--AACA--------TGGCT-A-CAGA---AA-AAGACT---G-GAATGCAA--CAA-AGATT-TCTTGAGCGAA---A---AG-ATAGACA-GGGA-GCT-CAGCG--AGGCT--TACATGG----ACAGCAG-CTGA-AA-AAAGGCCAAGACTGAGAGTTTTTACCTACTCCACGAATCCTA--CAGACC-AGGCTTGGGATTTTTTT-CCCGGAG-TC---G---CAAAAGATGC-ACGCGGACTGGAA-CT-GGCCTCTACAA--CC-CT-CAG-AACG------AGCCT----CCG-GCCA-TGAAC-AAAGAA--GA-TTTG-C-GA-TCATTACCACCA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGATAA-TGAGATTGG-AA-TCATACC--AC-G-TCCTTGCCTGAAGAAGC----GG----------A-A-AACTG------AC--GGGCAAAAATCTAGG-AACCCTAGG-AAGG-A-TTACACTCCAGATT-ACGCTA-TAAC-----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AAGGCAGCATTTATCCGC----AGACCAGTA----AAGA-AAGATGTAT-CCGCAG-A--CCAGT--A-AGAA-ATCGGGC----CGATAAACC--AGCAGAAGTAAAACACAAACA-AAGGGATCCTGTGCTACA-AGT-GC-GGTAAATTAGGCACT-GATCAGT-GACTG---TCGCAAGGAACAAGCGGAGATCGATGGAAGGATGATTGGG---CCCGCTACCTGGCTCAAAACCCG-TGTG-AGAGAAGAGTACAAACCGTTAGCAGATTGTGAGAATC--CCCGCACC--A------CTGAAGAACC-GCC-TAAAAGAAGAGAAGAAA-TGAGCCG-AAGTAAAAA-----CTTGAAACTGTTTTTTTAT-GC----TGTTTTAAAAC--TG-TTTTCATTGTTAAAAAACTTGAACTGTATTTTATG-CTGTTTAAAAACTGTTTTACATTGTT-------TCTTTAATAAACATGTAAAACTAAAAC-CTTGGTGTTAGTCTTTA-TATGCAGAGGAATACCACAAGGATTTTATACACTGGAATTTCAC-AGATTTATGCGATCGATACA-G-GGAATACACAGGGAATACAC-G------GATA-TTT-----ATT--G-C----GATCGA----------TT-C--TA--AGTGTGC-TACA--TTTT------TGA-CAGTCATAATGC--CTC-CCAAGTGCGATTTTCAGA--A--------------AAT--AGCTTT-CAC---CCTTTTCCACAACTCA-A--AGCGAAAGTAGACCA-CGGC---AA-TAG-CCAACCTA---TAGC-TCCG---G-CATCTAAA-CCCGGCCATGCTT-A-------TT---A-ACCCG---G----ACTC--------TA-AAC--CC-GGCC-GGC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAAA--------------CTT---GACC--C---CGTCCTAGCTATTGCAACC--G----C---CCAATC-GAGGCCAGACCACCGCTTGACTCAATCAGAAGCCGCATTGCTTGACCTCATTTGCAGTAAAAAGT--CACTCA-GTTGAACCTCCCTATGGAGGG
gi|10 : taatgaaaggcttcgaacacctgtatttataggtgaaaaaaaggtaatgcattcaaccgtgtctgtgcatcacgtgatcaacccccttgtgcgttagtgtgcgttagcattcaTTACCTA-GCCA-GAATATGT--CAAACCCAGCCTTAGGAGTTTTTT-CCCGGAG-TC---A---CA--ATATGCAACG-GAACTGGAA-CTAGGCCTCTACAA--CA-CG-AAG-AATGCATCGGAACCTGAGGCCGCGCCAATGAGC-AAAGAA--GATTTTG-C-GA-TCATTTCCACG------------TA-GA-C-GGGATCA--TG--AAC-AGAATTAA-TGTGCTG-GGTGA-TGAAATTGG-AACTCATACC--Agggctata
gi|11 : G--AAA------CAGGAAAATCATGTCTTCGGATTGCTCCCCAGACAC-GCGAGATTAATTCGCCATAAGACCAGTAACACAATA-GAGAT-TATCACGCAATACCCCGTT--A-AGAA-ATTCGGCATCGCAGTAATTCGAAACTGAATCGAAAC-TAAAC--AAGGACTCCT-g
gi|12 : GATTTTACTG------AAT--TTTTTACAA-TTAG-C----GATCGAAT-AACACATTT-CCGTA--AGTGTGCTTACA--
gi|13 : gagatatacacttactgcga-A--CTCTAAACTAGGC--------T-AA--AG-C-GCTCTA---C-AC--CCG---G-T-TATAAA-CCCGACCGGGCTC-ACCGGGCTTT---AAACCTG---GCCGTGCTA--------TA-AAC--CC-GGCTGGAC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAaactatatttcattacttaattgaaacgattttccatacatgctctacaaaccaaaaacc
gi|14 : cctgcGA-CTTACACC-TGTATAT---AGAAG-AAC-------CTGCGT-TT-GAA--GCCGGACATTTT-TA-------AATAAA-AA--AAAAA--CCATGCACA---GCC--------------CTACTTTAAAACAAAAT----ATGAGTG-AC--ACAC--
gi|16 : -----CTTG-AACTG--TTTTCAT-GCTTATTG------AAC--TG-TTT---------AAA
gi|17 : gggactgtgTTTATTATGCACAGGAATA-CAC-AGGATTTAAAACACTGGacattgtgc
gi|2 : AGAGTCG-GAC-ATAA--TA-ATA-CAGCACATTTACTCCCA-GATC-AT--GA-CTTACAC--TATATCT---AGAGA-ATC-------T-GCGT-T--GAA--GCCGGACATTT-GTA-------AA--AATAA--A--CA--CCATG-ACA---GGCCTTTTTGACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACAC--ATACATGAA--GTGGGCAAGCAG--CTA----G----------------CT--TTGAGAGCG-------A----------CATA--A---GATTCGATAAGCTAGTGC-CT---GGGAAAAAACTCAATT-GGCACCATGCC--A-GCAGTATGGC-AACT-GAGAC-CAGC--A----CT---GGGAAGAAAA-CTCAA-TTGGCA-CCATGGGATGCGCTGCCACCTTGAAAAAAAAGACG-CGTCATGG-CCC--CAA--CCGAATGCCTTT-GGGAA--AAAACCAGAATTGGCACCATCGAGTTAG---GCAACTG-------------GAGGTCGCGGA-TGGT---AACTCGCGACT-AGA-----GGTAAATGCAATGGCC--GCTG-GCACACTA-CGA
gi|2 : gagc----CT---GGGAA-AAAA-CTCAA-TTGGCA-CCAT----------GCCA-GCAGTAT-----GGCAAC----TGA-GAC--CAG--C-----AC---T-GGGAAGAAAACTC--AATTGGCACCAT-GGG---AT--GC-GCTGCCACCTTGAAAAAAAAGACGCGTCATGGCCCCAAC---CGAAT--GCCTTTGGGAAAA---AAC--CAGAATTG-GCACCAT--CGAGTTAGGCAACTGGAGGTCGC---GGATGGTAACTC----GCGA--C--TAGAGGTAAATGCAATGGCCG--CT---GGC-ACACTA--CGATGCACTCCT---TCACTATC--GACT-TCAGA--CCTGACC-AGAGAACA-AT-GGCT---CAGAACA--C-G-CTAGAATTGCGTGG-AACA----------CTCAGAA------AAA----GTGAA----TAACA--------TGG-T-ATCAGA---AAGAAGAC----GAGAATGCAA--C-A-AGATT--CTTGAGCGAAGTAA---AGAATAGACA-AG-A-GT-ACAG-G--AGGCTAC---ATTA----ACAGCA-ACTGA-CGG----GCCCAGACTGAAGGTTATTTCCTA-GCCA-GAATCCTAGGTAGACC-AGGCTTTGGAATTCTT--CCCGGAG-TC---AT--CA--AGAT-TAACG-GGACTGGAAACTGGGCCACTACAA--ATGCT-CAGGAATC------AACCT----CCG-GC-A-TGACA-AAAGAA----TTTTGGC-GA-TCATT-ACACGAACAC-------TA-GATC-GGAATTGATTT--AACACGCATTAA-TGTGCTGAG-TAAGTGAGAT-GG-AA-TCATAC---ACAG-TCC-TG-CTGA-GAAGC---TGG----------ATAGAACTGT-----AC--GGGAAAAAATCTA-G-AACCTTAGGGAAGGCACT--CACTCCTGATTCACGCTACTAATA----CGGCGTGCTAACAC-TCTGCGG------TG--AA-------C--GAC--TTG-GTCGC-GGAT-GCCC---AGA-AA---AACGATTATC-------AGACCA-TA----AGAACAGGAT-TATCCCGCAG-ACT--AGTTGACAGAATATCTG-C----CGATTAACC--AGCAGA---GAAAAACAATCAGAAGGGA-CCT-TGC-ACACAGTGGCGGGGAAATTAGAAACTGGATCAGTGGACTGAGTCCGGAAG-AACAAGCGGAGATCGATG-AATAATGATTGGACATCCCG-TACCTGGCC--AAACCTGCTGTGAAGAGACGAG---AAAACGT-AG-AGAGTGTG-GA-TC--CCCGCACCTA-------C-TAAGAACCCGCT-AAAAAGAAGC-AA-AAACTGAGCCGAAAGTAAAAC-----CTTG-AACTGTTTTTTTATAGC----C--------ACGGTGGTTT---------AAGCCCTTAGGGTG------A-GGCTGTTTTA----TGTCTTG----GTG-------TGTTTA-TAAACATGTAAGACTTAGATACTTGGTGTTAGTCTTTATTATGCA-------------AGAATT-AA-GCACAGGAA-TGAACTGGATTTC---------TGCG-ACGGCATA-ACA-----TTCGCTAAAGTGTGATCATTT-------T--GAC----G-TC-A-T-AGCATGCTCTC--TGGCAGTGT-C-CAGA--TTTCAGAAAATGAGC-TTCA----GC--CTTTCCA----CGA-ACTCAAA--ACAGTAGACCACGGCAAT--AGC----CAA---CTTAT----AAAC-CG-AAACTCTAAACCCGGCTCGGGGC-TCAA-CGG-GCAA--TAAAGCGAC-GCCGAGTG-C-TATAAA-CCCGGC--GGCTCGACCGG---CTCACAGGCCGA---T----GCTA--------TATAACTTCA-GGCCGTGC--T--------ATAAGAACGCGC-------CGGGTCACTC------GGG----------------C--CTCTAAAACC--C--GCGGC-TGGCCGGTGCTACCCGG----CGAACCCTGC-TGGGTCAA---ACTGCT-GAC--AATCA-------CA----T-GACCTC-TTTGCA-TACAAAGTTGCACTCAGGTTGAACCtgcactccttcactatcgacttcagacctgaccagagaacaatggctcagaacacgctagaattgcgtggaacactcagaaaaagtgaataacatggtatcagaaagaagacgagaatgcaacaagattcttgagcgaagtaaagaatagacaagagtacaggaggctacattaacagcaactgacgggcccagactgaaggttatttcctagccagaatcctaggtagaccaggctttggaattcttcccggagtcatcaagattaacgggactggaaactgggccactacaaatgctcaggaatcaacctccggcatgacaaaagaattttggcgatcattacacgaacactagatcggaattgatttaacacgcattaatgtgctgagtaagtgagatggaatcatacacagtcctgctgagaagctggatagaactgtacgggaaaaaatctagaaccttagggaaggcactcactcctgattcacgctactaatacggcgtgctaacactctgcggtgaacgacttggtcgcggatgcccagaaaaacgattatcagaccataagaacaggattatcccgcagactagttgacagaatatctgccgattaaccagcagagaaaaacaatcagaagggaccttgcacacagtggcggggaaattagaaactggatcagtggactgagtccggaagaacaagcggagatcgatgaataatgattggacatcccgtacctggccaaacctgctgtgaagagacgagaaaacgtagagagtgtggatccccgcacctactaagaacccgctaaaaagaagcaaaaactgagccgaaagtaaaaccttgaactgtttttttatagccacggtggtttaagcccttagggtgaggctgttttatgtcttggtgtgtttataaacatgtaagacttagatacttggtgttagtctttattatgcaagaattaagcacaggaatgaactggatttctgcgacggcataacattcgctaaagtgtgatcattttgacgtcatagcatgctctctggcagtgtccagatttcagaaaatgagcttcagcctttccacgaactcaaaacagtagaccacggcaatagccaacttataaaccgaaactctaaacccggctcggggctcaacgggcaataaagcgacgccgagtgctataaacccggcggctcgaccggctcacaggccgatgctatataacttcaggccgtgctataagaacgcgccgggtcactcgggcctctaaaacccgcggctggccggtgctacccggcgaaccctgctgggtcaaactgctgacaatcacatgacctctttgcatacaaagttgcactcaggttgaaccacgaggacggcgcgtttagtatact
gi|3 : gagcagagtcggacataataatacagcacatttactcccagatcatgacttacactatatctagagaatctgcgttgaagccggacatttgtaaaaataaacaccatgacaggcctttttgacggggctactttaaaacaaaataatgagtgaccgacacatacatgaagtgggcaagcagctagctttgagagcgacataagattcgataagctagtgcTTCTTGTAACCCGACC----AGTTGTACCGTGGAATACACGTGAGATTTGTGTAAGGCAGCGGATGATCGCTCCAGCGGGAAAGTACA-G-AGCAATTTCGGGCGAATTACTTTGTTCT-TCAGTG-TATAGATAGATTTTTCTGTCT-TAGACACTGGGTA-TACATCTGAGGGAAACTA---T-TTAATGGTACATAATTGATGT-TCGC-CATCGA--AATTTC-GCCTCGGA-CCATATC--AAAAA--TCGTGGCGGTTT---GATT--ATTCTTAGTATTGCGTCCCATCTTATTTCG-AACTCGTAGTTGGAAG--ATAT--CTTG-CCTGCTGATTTGTTTTTCTAGAGAGAACCCATGTAAC-TG--AAAAG-TCGT--CTGATGATAACCGTATCCACTAGTATAGTCTTAGCCAGT-TAT-ATAGTGTTTAATGAACGGCTACTACAAacgaggacggcgcgtttagtatact
gi|3 : TATGGAGAAATTGTTTGAGTGCATAGCAGGCAGGATGTGGGAAAAACCGTTAC-GTGATGCGTTTTCAGGGGACGAAGAG-CT-CAC-A-AATTTACCTAGCAGCACA-TACATCACACGAACTATATGAGCTTACACCGTGTTTCTATCAGAAGCAGCAGCCTATC-ACAT-TTAGAAGTGCTGACCAGTTGCTACTCAACTAGCATATAATTAGGTAGTCTATGCACAAGCGTCCCTTTTTATATGTGCTACTTTTAAA-AAAATGGAAATTTATATACCG---C--AAAGTCGGACTGTAAGCAGGCAGCTCTGTCACGGATAACACCCATTGCTCTCGTTAAGTGCATCCGTCCAAATTGGCCACT-----A---GACTCG--------GCATACTAGAGGTAGAACTCTCAATT-GGCATCCATGCCTACGCT---TGGC-A--CTGAAGC-CTACA-GATCCCT---CGGAA-AAAA-CTCAA-TTGGC--CCAT-------G--GCCAGTCTG--------GAC--------GA-G-C--CAGT-C-----AC---T-GGGGA--AA--CC--ACTGTGCACAAT-Gtgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaattggccactagactcggcatactagaggtagaactctcaattggcatccatgcctacgcttggcactgaagcctacagatccctcggaaaaaactcaattggcccatggccagtctggacgagccagtcactggggaaaccactgtgcacaatgtcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|3 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagc----TGGCCA--C-TAGACTCGGCATA----CTAGAGGTAG-AACT-CTCAA-TTGGCATCCAT-------GC--CTACGCTT--------GGCA-C----TGAAGCCTACAGATC-----CC---TCGGAAA--AAACTC--AATTGGC-CCAT-G-GCCAGT------CTG----------------GACG------------AGC---C-----AGTCACTGGGGAAA--------CC--ACTGTGCACAATGTCAAGATGGGCA-GT----CTACCTCTGGCT------TCTCAAATGAAGC-AGATAAG--AA-GCAA-AATCGAGCTCTGGGCGACTCTAATC----AAATC-GGGGTCAC-ATCCTGACTATCA-A--CCTGACCTAGAGAGCACATGGGCTGCGTAGAAACTTCAG-CTAGAAATTCGTGGTA-AAGTATGCAGAGCTTAGAGTACACGAAAACACGTGGACGACTACCATTCATTTGTGG-TAA-CAGATACAA-TAGTCTCGAAAAAATGCAAACC-ACAGATTGTCTTGAGCGCA---CGTTATAATGTACGCGGGAGGTTACAG-GCCAGGTTACTATTTTGTATCACAGCAGACTGATAAGAAAGGCAAGAATTGAGtcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|4 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaatGAGTACAAACCGTTAG-AGA-TGTG-GAATCTGCCCGTACCTAAACAAAGT-GAAGAACC-GCCTAAAAAGAAGA-A-GAAACTTAGCCGAAAGTAAAAA-----CG-G-GACTGTGCTTT----AG----TG------AAC--TG-TTT---------TTATGCTT-AACTGT-TTTTA-----------AAAC-ATTGTGCATTGTTCTTGTTTTCCTTAATAAACATGTAAA-CTTAAAC-CTTG-TGTTATTCTT----------------------GGGATTTA-------------TTAT-GGATTTA--------ATACACA-GGAATACACA-AAATTTCACAG------GAT--TTT-----A-T--G-CCTTGGATCGA-T--ACACATTC-C--TA--AGTGTGC-TACATTTTTT------TGA-C-GTCATAATGCTTTTCTCCAAGTACAG-C--CAAATGACGT-------CA-CAATAGAGC-TCGCGCT--CCTGTGCTAAAACCTGCA--CTCTAAACTAGCCCAGCGGC---AA-TA---CACTCTA---CGCCATAC----G-C-TCTGAACCCCGGCCGGGCCT-ACCGG---C--------------------CTC--------TA-AAC--TC-ACCCGTGCTAT--------A---------GC-------CCGGACACCCCTGCAGGGGTCAAA-----------TCGCTT---GACCAATCAGCAT
gi|4 : a----GCTC--------TG-AAC--CCCGGCCGGGCC-T--------A------------------CCGGC---CTCT---------AAA-----------C---TC----ACC--C----GT----GCTATAGC--CC--GGACAC---CCCTGCAGGGGTCAA---ATCGCTTGAC-CAATCA------GCA----TTGACCTCATTTGCA-TAAAAAG-TGCACTCA-GTTG-ACCTCCCTATCGAGGGtgacctcatttgcataaaaagtgcactcagttgacctccctatcgaggg
gi|5 : agagtacaaaccgttagagatgtggaatctgcccgtacctaaacaaagtgaagaaccgcctaaaaagaagaagaaacttagccgaaagtaaaaacgggactgtgctttagtgaactgtttttatgcttaactgtttttaaaacattgtgcattgttcttgttttccttaataaacatgtaaacttaaaccttgtgttattcttgggatttattatggatttaatacacaggaatacacaaaatttcacaggattttatgccttggatcgatacacattcctaagtgtgctacatttttttgacgtcataatgcttttctccaagtacagccaaatgacgtcacaatagagctcgcgctcctgtgctaaaacctgcactctaaactagcccagcggcaatacactctacgccatacAAGAAGA-A-GAAACTGAGCCGAAAGTAGAGATGGTGCTTG-AACTGTTTT--TAT-GC----TG------AAC--TG-TTT---------AAA------AACTG------------ATTTAAAAAC-ATTGTGCATTG-T-------TCTTTAATAAACATGT-AAACTTAAAC-CTT-GTGTTAGTCTTTATTATGCACAGGAATA-CAC-AGGATTTAATACAGAGGAA-T--------------------ACACA-A-GAATTTTACT-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-TAAACACATTC-C--TA--AGTGTGC-TACAG-TTTT------TGA-C-GTCATAATG---CTCTCCAAG-------TCCAAA--AC---------CG--AAT--GAC-TT-CACAATCCTGTGCTAAACCTGC-A--CTCTCAACTAGGCCAGCGGCTT-AACTAGACCGACCTA---TAAA--CCG---GCC-TCTAAA-CCCGGTC-GGCTC-ACCGGCT-CT---AGACCCGGCCG----GCTCACCGGTTATA-AAC--CA-GGCCGGGC--TCTAGACACG---------GCCGGGTAGCCGGCGACCCCTG-TGG---CAAAACTGCGCATGTC--CTT---GACC--CCAGCGTCCTAGATATTG-AACC--A----C---CCAT-C-GGG
gi|6 : GAA-CTGGGCCTCTACAGATCC-CTGCAG-AACG------AGC-T----CCG-GCCA-GGAAC-AAAGAA--GATTTTG-CGGA-TCATTACCACCACCAC-------TAGGA-CGGGGATCG--TTAGAAC-CGCATTAATTGTGCTGAGGTAA-TGAGATGGG-AA-TC-TACCGAGCAGTTCC-TG-CTGAAGAAGCTATTGGCACGTTTCCCA-AGAACTGGGTATCACGTGGGCAAAAATCTA-GTAACagcgtttatac
gi|6 : ATT-ACGCTACTAACATCCTC--CGTGCTA-CACCT-TGCGGTTGTTCGGCCAAA------CAGGACATTTG-GTCGCatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatattacgctactaacatcctccgtgctacaccttgcggttgttcggccaaacaggacatttggtcgc
gi|7 : gaactgggcctctacagatccctgcagaacgagctccggccaggaacaaagaagattttgcggatcattaccaccaccactaggacggggatcgttagaaccgcattaattgtgctgaggtaatgagatgggaatctaccgagcagttcctgctgaagaagctattggcacgtttcccaagaactgggtatcacgtgggcaaaaatctagtaacatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatATGA-CGCG--AGAGG--AAATACAGGCAATA-----GAG-GAATGA------TTCACCAGTTCTA-GGA-AGAT-----TATGGATAGACG--AAGTA-TA-GTCTGGCGGAA--TAAAGTGTTA---GTACAGA---GATGCGTCGCGCATCGATTTA---CAGC--TGGA-C-G-ATCTAAAAAA--T--TGGGTGTTTTATGAGTTCAT-----GTATTGCGTCC---CC-AT---GGAAC-----GTAGGAAGGAATATTAC-TGGCC-GCCG-------TTTTTAG-GCGA---CATGT-A--TGAAAAAAGACC-T--CTGG-------------TATCAGTCTGGTTGTA-CAAGTGCTT-ATA-CG-TTATTGAACGGC-ACTGCTAA
gi|8 : gcCC-AGGCTTAGGATTTTTTTTCCCGGAGATCCCAGAATCAGAAGATGTAACA-GGGATGGAA-CTGGGTCTTTACAA--CC-CT-CAG-AATG------AGCCT----CCG-GCCA-TAAAC-AAAGAA--GATTTTG-C-GA-TCATTTCCACGA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGA-GTAA-TGAGATTGGAAA-TCATACC--ACAG-TCC-T-ACTGAAGAAGC---TGG----------A-AAAACTG------AC-----C-----TCTA-A-AAACCTAGG-AAGGAA-TA-CACCCCAGATT-ACGCTACTAAC-----C--CGTGCTA-CAC-T-TGCGG------AC--AAtgaaagatttggg
gi|9 : gacCCA-TGACCCAAAGAATAGATTTTG-C-TACTCATTTCCACC--CACGTTAGGTTA-GA-C-GGGATAG--TC--AAC-AGAATTAA-TGTGTGGAGA-GA-TGAGATTGGAAA-CCATACA--AGAA-TCC-T-ACTGAAGAAGA---TGA----------A-GGAGCTG------AC---GGCAAAAAT--------CCCAAGG-ACGG-A-----ACT---------CGCCACTAAC-----C--CATGCTA-CAC-C-TGTGG------AG--AAATACTAGTAGGAC-ATTG-GT
blockSeqs : AAC . ACCG AT T GTG GC TGAT C GA GGC ATTTC C CTTTGT CA C T T TTTTC A CT . CA GGAATAAAGTG ATG ATT CG G T TTTC CTC CCAT TA TCG CGG TAT ATTCTTA CATCTTATTTCGAACTCGTA T GAA TAC G T TGATTTGTT C A ACC AAC A A GT TGATAACCGTATCCACT C G G . G T T T A AA G T ATA A AA T C C TCG . T TTTACCTAG T C T AT G CG ATC C A AGCCTATC TTA GT GC CTCAACT T T TTAGGTAGT GC AGC CT G TATGTG A C GGAA T CGA . G CT GG A CT TCACGGATAACACCCATTGCTCTCGTTAAGTGCATCCGTCCAAATTGGCCACTAGACTCGG A AGA A . AGCAGTA AACT T A AGATCC AGA G . . AT GGGATGCGCTGCCACCTTGAAAAAAAAGACGCGTCA A C TA CCGAATGCCTT C GA AG GGGATGCGCTGCCACCTTGAAAAAAAAGACGCGTCATGGCCCCAACCGAAT CCTT TGCAATGG GA T AC GT T A GTCTACCTCTGGCTTCTCAAATGAAGCAGATAAGAAGCAAAATCGAGCTCTGGGCGACTCTAATCAAATCGGGG T CT A GA TA A C G GCG TTCAG TAAAGTATGCA TACACGAAAACACGTGGACGACTACCATTCATTTG TAT TAC G TCGAAA ACCAC GT GTAA A GC G G TA GCC ACTATTTTGTATC GA TAAGA A . . GG C A G TT A CCAGAATCAGA GCA . A A ATCC G G CATCGG GAGG C A G C TA G G C T CCACGTTAGGT G T G AT AG A T G G T A C CGA T . G TATT CACGTTTCCC T G GGTATCACGTG GT G CACT C T C ATCCTC A TC TTGTTCGGCCAAA AA T C T C CACG CGCCATA G ACAC T C . C TACCCCGTTA T C G ATCG GA ATC A AG T . . C G G G A G G AGT G . . T CAT . . C A C T T . G . A TG TAAACAAAGT C T AA C A TGGTG . TT C A TTATTG GG G AAGCCCTTAGGGTGAGGCTGTTTTAT T C TTCTTGTTT A A A A GG T CAGGAATACAC AA T TGAACTGGATTTC AC C A T T AAGTGT CA TTACAATTAGC ATA A T CG GC T TT AGAAAA G . T CTT T A CGAACTCAAAACAGTAGACCACGGC AG TTCACAAT G CGAAA TCG TCAACGGGCAATAAAGCGACG AGT CC C G G CTCTAGACCCGGCCGGCTCACCGGTTA T TT C TCTAGACACGGCCGGGTAG G GCTGGGGT ACTGCGCATGTCCTTGACCCCA CC CT CGGCGAA C G A . T C GCA T A . TT G A C
blockSeqs : TGA . . G . . . T . . . . . . . G GGAAACTAT . . T . . CA T CG . T GTG . TCAT CCATGGAAC A A CT . . CG T . . A . . T TATC T . . . . . T . G CT . . TAATA . . . . . C . . T CT TT . T . C T AAAAA GC . CC T CGGGG A C A . CG . G . AA G . GCTTTGAGAGCGACATAAGATTCGATAAGCTAG . . T . CTACGCT ACT . T ATA . . . . A GCCAGCAGTATGGCAAC . A . ATCCC . . . CGAGTTAGGCAACTGGAGGTCGCGGATGGTAACTCGCGACTA TCAC AAC . . CA A A G ACTGGAGGTCGCGGATGGTAACTCGCGACTAGAGGTAAATGCAATGGCCGCTGGCACACTACGATGCACTCCT . . . A A G . . . CG AACA AAAGTGAATAACA TAA . . GA CA . CGTT A A . . A G ACATTA A CGG . . . . T A T . ATCA GTA . . G ATG . . . . . . C . . . . . A GAACAC . . . . . . . G . G A . C . . G T . . G TACG G . AATA C A . ACGG . CT AGAAATACTAG AT . . . . AA . . . A . . C ACTAGTTGAC . T . . . . . . . . . . . . . . . TAC . . AG C A . . TG T . TG . . TTATGCTTAACTGTTTTTAAAAC G C TG A A A . G T CAGGAATACAC AT A TTATGGATTTAA CA T G T T . . ATGCCTTG TAA G . . . . G . . . T C T A TACAGCCAAATGACGTCAC . TCGCGCT G CTGCA CAG TTAACTAGACCGACCTATAAA . T . G . GCTTTAAACCTGGCCGTGCTA . . . TATAAGAACGCGC C GCAGGGGT TCGCTTGACCAATCA C C GGACAC C G . . . . CA . . . T . .
blockSeqs : . . . . G T T . G . . . ACA G . . . . T . . . A . CAC . G A . . . . A GCCTACGCTTGGCAC . C . TCAC . . . GGCCAGTCTGGACGAGCCA A . . . AA . . A T . . ACA TA . . G CA . . . . . . A . . . . . T CACCAC . . . . . . . G . T . . C . . A T . . A AC A . A . . . C . T TGAA A . AG C A . . TT T . TG . . AAAAACTGATTTAAAAAC G . T . . . . G T . A A TA A . . T A . . TGAC TA A . . . . . . . . . . T . TCCAAAACCG . CAA . TGCA CAG AATACACTCTACGCCAT . C . . . CTCACAGGCCGATGCTA . . . TATAGC C GTGG CCTCTAAAACCC . A AC A . .
blockSeqs : . . . . . GGCCAGTCTGGAC . . . CAC . . . . G CC . . . . . . A . . . . . T GACAC . . . . . . . A . T . . A . . A T . . G AC . . C . C . . . . . . . C . . . . . . . T . . ATGC T A . . . . . . TAAAGCGCTCTACAC . C . . . CCTC . . . TAGC G GGG CTCACCC
blockSeqs : . C . . . . . . G . . . . . . . . . . . . . . . . CTA . .
blockSeqCons : A* GCCCAGCTTGGCAC*********************** CCGC********* NACGC******** G* T*** ACG******** G** CG********** ************* ** ATGC************* TA** CAG TCAACAAANCGCCTACG********** C** CTCCAAGGCCGGTGCTA****************** TATAGC************************ NCTCTGAACCC******************
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACCGCACAGTCGTACCGTGGANNACACGTGAGACTTGTGTAAGGCAGCGGATGA-CGCGCCAGCGG--AAATACAGG-AGTA-----GAG-GAATTA------TCNACCAGTG-TA-AGA-AGAT-----TATGT-TAGACG--AGGTA-TACGTCTGGGGGAA--TAAAGT-TTA---GTACAGA---GATGC-TCGC-CATCGATTAA---C-GC--CGGA-CCG-ATC--AAAAA--T--TGGCGGTTT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTNGGAAGGAATAT--C-TG-CC-GCCG-------TTTCTAG-GCGA---CATGT-AC-TGAAAAAAG-CC-T--CTGA-------------CACCAGTATAGTNTTA-CCAGT-TTT-ATA-CG-TTATTGAACGGC-ACTNCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGAAATTGTTTNGGTGCATAGCAGGCNGGATGTGGGAAAAACCGNTANAGTGATGCGTTTCCGGGGGACGAAGAG-CT-GAC-ATAA--TACATA-CAGCACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAATA--CCATGCACA---GCCCCTTTTTACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACAC--AAACATGAA--GTGGGCAGGCAGCCCTA----G----------------CTCGTTAAG-GCG-------AAATTGGCCACCATG--A---GACTCG---AGCC-GCGCACT---GGGAAAAANCTCAATT-GGCATCATTGC--A-GC----TGGC-A--C-GAGGC-CGGCA-A----CT---GGGAA-AAAA-CTCAA-TTGGCA-CCAT------CGCTGCCANGCTG-A------GGCA-C----TGA-GCC--CAG--C-----AC---T-GGGAA--AAACCC--AATTGGCACCAT-GNGCCAGT--GC-GCTG------------AGAGGACGCGTN-TGGC---AGC---CGANT-AGNCACTGGGGAAA---AAC--CC--ACTG-GCACNATG-CGAGNTGGGCA-CTG-AGCTAGC-CTGGATGG-AACTCT---ACGA-GC-ATANAAG--AA-GCAA-AGCCG--CTC--GGC-ACTCTA--C----CACTC-T---TCAC-ATC--GACT-TCA-A--CCTGACCTAGAGAGCACAT-GGCT---CAGAAAA--CAG-CTAGAAATTCGTGG-A-CA------AGAGCTCAGAA-----GAAA----GTGAACGA-TAACA--------TGG-T-A-CAGA---AA-AAGACT---GAGAATGCAA--C-A-AGATT-TCTTGAGCGAA---A---AGAATAGACG-GGGA-GTTACAG-G--AGGCTACTACATTG----ACAGCAGACTGA-AAGAAAGGCCAAGACTGAGGGTTNTTACCTA-GCCA-GAATCCTA--CAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGCAACG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AACG------AGCCT----CCG-GCCA-TGAAC-AAAGAA--GATTTTG-C-GA-TCATTTCCACNA-CAC-------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TGACTGAAGAAGC---TGG----------A-AGAACTG------AC--GGGCAAAAATCTA-G-AACCCTAGG-AAGG-A-T--CACTCCAGATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AA-GCAACGTTTATCCGC----AGACCAGTA----AANA-AAGAT-TATCCCGCAG-ACCCCAGT--A-AGAA-ATCCGGC----CGATAAACC--AGCAGAA-CGAAACACAAACA-AAGGGATCCT-TGCTACACAGTGGCGGGNAAATTAGGNACTGGATCAGTGGACTGAGTCCGNAAGGAACAAGCGGAGATCGATGGAANGATGATTGGGCATCCCGCTACCTGGCCCAAAACCCGCTGTGAAGAGANGAGTACAAACCGTTAG-AGA-TGTG-GAATC--CCCGCACCTAA------C-GAAGAACC-GCC-AAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTG-AACTGTTTTTTTAT-GC----TG------AAC--TG-TTT---------AAACGCTTGAACTGT-TTTTA-G-CTGTTTAAAAACTGTTNTGCATTGTT-------TCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATGCACAGGAATA-CAC-AGGATTTAATACACNGGAA-TTNAC-GGATTTA--------ATACA-A-GGAATACACA-GGATTTCACTG------GAT--TTT-----A-T--G-C----GATCGA-T-AACACGTTC-C--TA--AGTGTGC-TACA--TTTT------TGA-C-GTCATAATGC--CTCTCCAAGTGCGA-NTTCAAA--ACG--------CG-CAAT--AGC-TT-CAC---CCTGTGCTAAAACTCG-A--CTCTAAACTAGGCCAGCGGC-T-AA-TAG-CCGACCTA---CGAC-TCCG---G-C-TCTAAA-CCCGGCCGGGCTC-ACCGG---CT---AGACCCG---G----GCTC--------TA-AAC--CC-GGCCGGGC--T--------A---------GC-------CCGGCGACCCCTGCTGGGGTCAAA-----------C--CTC---GACC--CCAGCGTCCTAGCTATTGCAACC--G----C---CCNTGC-GGGGTCAA---ACCGCTTGAC-CAATCA------GCA----TTGACCTCATTTGCA-TAAAAAGTTGCACTCA-GTTGAACCTCCCTATNGAGGG
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACCGCACAGTCGTACCGTGGANNACACGTGAGACTTGTGTAAGGCAGCGGATGA-CGCGCCAGCGG--AAATACAGG-AGTA-----GAG-GAATTA------TCNACCAGTG-TA-AGA-AGAT-----TATGT-TAGACG--AGGTA-TACGTCTGGGGGAA--TAAAGT-TTA---GTACAGA---GATGC-TCGC-CATCGATTAA---C-GC--CGGA-CCG-ATC--AAAAA--T--TGGCGGTTT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTNGGAAGGAATAT--C-TG-CC-GCCG-------TTTCTAG-GCGA---CATGT-AC-TGAAAAAAG-CC-T--CTGA-------------CACCAGTATAGTNTTA-CCAGT-TTT-ATA-CG-TTATTGAACGGC-ACTNCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGAAATTGTTTNGGTGCATAGCAGGCNGGATGTGGGAAAAACCGNTANAGTGATGCGTTTCCGGGGGACGAAGAG-CT-GAC-ATAA--TACATA-CAGCACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAATA--CCATGCACA---GCCCCTTTTTACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACAC--AAACATGAA--GTGGGCAGGCAGCCCTA----G----------------CTCGTTAAG-GCG-------AAATTGGCCACCATG--A---GACTCG---AGCC-GCGCACT---GGGAAAAANCTCAATT-GGCATCATTGC--A-GC----TGGC-A--C-GAGGC-CGGCA-A----CT---GGGAA-AAAA-CTCAA-TTGGCA-CCATGCCCAGCTTGGCAC-----------------------TGA-GCC--CAGCCGC---------T-GGGAA--AAACCC--AATTGGCACCAT-GNGCCAGT--GC-GCTG------------AGAGGACGCGTN-TGGC---AGC---CGANT-AGNCACTGGGGAAA---AAC--CC--ACTG-GCACNATG-CGAGNTGGGCA-CTG-AGCTAGC-CTGGATGG-AACTCT---ACGA-GC-ATANAAG--AA-GCAA-AGCCG--CTC--GGC-ACTCTA--C----CACTC-T---TCAC-ATC--GACT-TCA-A--CCTGACCTAGAGAGCACAT-GGCT---CAGAAAA--CAG-CTAGAAATTCGTGG-A-CA------AGAGCTCAGAA-----GAAA----GTGAACGA-TAACA--------TGG-T-A-CAGA---AA-AAGACT---GAGAATGCAA--C-A-AGATT-TCTTGAGCGAA---A---AGAATAGACG-GGGA-GTTACAG-G--AGGCTACTACATTG----ACAGCAGACTGA-AAGAAAGGCCAAGACTGAGGGTTNTTACCTA-GCCA-GAATCCTA--CAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGCAACG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AACG------AGCCT----CCG-GCCA-TGAAC-AAAGAA--GATTTTG-C-GA-TCATTTCCACNACGC--------TA-GA-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TG-CTGAAGAAGCT---GG----------A-AGAACTGACG--------GGCAAAAATCTAG--AACCCTAGG-AAGG-A-T--CACTCCAGATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AA-GCAACGTTTATCCGC----AGACCAGTA----AANA-AAGAT-TATCCCGCAG-ACCCCAGT--A-AGAA-ATCCGGC----CGATAAACC--AGCAGAA-CGAAACACAAACA-AAGGGATCCT-TGCTACACAGTGGCGGGNAAATTAGGNACTGGATCAGTGGACTGAGTCCGNAAGGAACAAGCGGAGATCGATGGAANGATGATTGGGCATCCCGCTACCTGGCCCAAAACCCGCTGTGAAGAGANGAGTACAAACCGTTAG-AGA-TGTG-GAATC--CCCGCACCTAA------C-GAAGAACC-GCC-AAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTG-AACTGTTTTTTTAT-GCCG----------AAC--TG-TTT---------AAACGCTTGAACTGT-TTTTA-G-CTGTTTAAAAACTGTTNTGCATTGTT-------TCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATGCA-------------AGGATTTAATACACNGGAA-TTNAC-GGATTTA--------ATACA-A-GGAATACACA-GGATTTCACTG------GAT--TTTATGC-------------GATCGATA--ACACGTTC-C--TA--AGTGTGC-TACA--TTTT------TGA-C-GTCATAATGC--CTCTCCAAGTGCGA-NTTCAAA--ACG--------CG-CAAT--AGC-TT-CAC---CCTGTGCTAAAACTCG-A--CTCTAAACTAGGCCAGCGGCTCAACAAANCGCCTACG----------CCG---GC--TCTAAA-CCCGGCCGGGCTC-ACCGGCTCCAAGGCCGGTGCTA------------------TA-AAC--CC-GGCCGGGCTATAGC------------------------CCGGCGACCCCTGCTGGGGTCAAANCTCTGAACCC------------------GCGTCCTAGCTATTGCAACC--G----C---CCNTGC-GGGGTCAA---ACCGCTTGAC-CAATCA------GCA----TTGACCTCATTTGCA-TAAAAAGTTGCACTCA-GTTGAACCTCCCTATNGAGGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CCCCCAAACTTGACCCAAGTTAATATATAACTTATTTGTTACCTGCGTCCGCCCGTTAGGTACTAG
Unaligned ( gi|18 ): GCATCCTAGATATTGAACCGGCCATCAGGACAGTTTATA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 2222 2222 1 222 11 1111 11 111 33333 1 333333 1 1 1 33333 1 11 1 11 2222222222222 222 222 22 1 22222 111 11111 11 22222 222 333333333 333333333333333333333 111 2222 1 1 444444444 1 1 222 2222 1 2222 77777777777777777 1 1 1 1 1 1 11 1 222 11 11 1 1111 2222222222222 1 1 22 1 11 111 1 333333333 1111 11 11 3333333 1 111111111 111 222222 22222 1 111 2222222222 1 1 11 55555555555555555555555555555555555555555555555555555555555555555555555555555 222 1 3333333333 111111 1 3333333 111 1111 22222 33333333333333333333333 11111 11 444444444444 11 11 111111111111111111111111111111111111111111111111111111111111111 33333333 11 1 11 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 11 1 2222 11 1 1 222 11 1 555555555555 666666666666666666666666666666666666 22222 222 1 333333 11 111 22 4444444 11 1 11 2222 2222222222222 11 22222 1 1 11 1 11 1 44444444444 1 11111 222222 1111 2222 11111 1 111 1111 3333333333 33333333333 111 1 444444 33333333 111 3333333333333333333 11 22222 3333333 2222 1 1 2222222222222 1 2222 11 333 22 1 1 1 1 1 1 1 222 1 1 222 1 11 1 1 1 2 1 11 66666666666 1 1 11 22222 11 444444444444444 11 888888888888888888888888888888888888 1 33333333 1 1 1 999999999999999999999999999999999999999999 444444444 222 444444444444 1111 111111 11 33333333333333333 2222 11 11 11 222222 1 1 111 8888888888888888888888888888888 11 3333333333 22222 1 777777777777777777777777777777777777777 9999999999999999999999 11 44444444444444 111 55555555555555555 222 2222222 111 333 22 66666666666666 1 11 1
lowQualScore : 111 3333 3333 22 5 111 77 8888 6 88 555 33333 3 888888 88 3 3 3 33333 3 88 3 22 5555555555555 333 333 55 3 7 66666 999 88888 88 77777 888 333 333333333 777777777777777777777 1 333 7777 3 3 555555555 2 3 333 4444 7 3 2222 55555555555555555 1 3 3 3 3 3 7 3 1 88 1 5 222 1 88 1 66 5 5555 8888888888888 7 3 3 00 0 22 777 0 1 666666666 4444 33 88 2222222 0 3 888888888 55 777 0 22 3 444444 55 44444 0 444 4444444444 2 2 00 99999999999999999999999999999999999999999999999999999999999999999999999999999 7 333 1 3 3333333333 888888 0 4 7777777 444 8 8 8 9999 00000 8 33333333333333333333333 8 77777 8 5 11 444444444444 11 0 11 0 0 666666666666666666666666666666666666666666666666666666666666666 7777 0 11111111 33 0 11 66 0 1 6 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 88 3 7777 44 2 6 3 333 88 7 3 222222222222 777777777777777777777777777777777777 22222 333 3 333333 88 777 00 5555555 7 44 6 3 44 1111 9999999999999 44 22222 1 3 3 88 0 1 1 33 0 66666666666 2 3 0 8 22222 8 8 333333 7777 8 6 1 6 99 6 6 6 7 0000 4 6 66666 6 6 99 99 6 6 3 6 3 3 6 111 0 8 8 8 0 4444 5555555555 8 3 33333333333 0 444 0 888888 2 3 8 88888888 8 000 1111111111111111111 0 11 8 6 7 6 33333 0 1111111 6 8888 1 3 3 6 7777777777777 3 3 6 8888 88 777 7 00 7 3 5 5 5 5 1 1 5 5 111 1 5 5 1 111 5 88 5 5 1 7 7 3 6 3 7 88 00000000000 3 3 99 55 2 3 00000 0 8 66 777777777777777 11 8 222222222222222222222222222222222222 3 3 5 1 2 55555555 3 5 0 5 999 333333333333333333333333333333333333333333 000000000 666 999999999999 4444 3 999999 99 55555555555555555 0 2222 4 8 11 11 8 99 888888 0 0 3 666 3 3 3333333333333333333333333333333 33 2222222222 0 8 0 66666 0 333333333333333333333333333333333333333 999 8 8 8 8 3333333333333333333333 0 8 11 222 99999999999999 0 444 66666666666666666 555 7 6 7777777 555 555 7 00 11111111111111 7 3 44 3 7 1
lowQualScore : ... .... .... .. . ... .. .... . .. ... ..... . ...... .. . . . ..... . .. . .. ............. ... ... .. . . ..... ... ..... .. ..... ... ... ......... ..................... . ... .... . . ......... . . ... .... . . .... ................. . . . . . . . . . .. . . ... . .. . .. . .... ............. . . . .. . .. ... . . ......... .... .. .. ....... . . ......... .. ... . .. . ...... .. ..... . ... .......... . . .. ............................................................................. . ... . . .......... ...... . . ....... ... . . . .... ..... . ....................... . ..... . . .. ............ .. . .. . . ............................................................... .... . ........ .. . .. .. . . . ................................................................................................ . .. . .... .. . . . ... .. . . ............ .................................... ..... ... . ...... .. ... .. ....... . .. . . .. .... ............. .. ..... . . . .. . . . .. . ........... . . . . ..... . . ...... .... . . . . .. . . . . .... . . ..... . . .. .. . . . . . . . ... . . . . . .... .......... . . ........... . ... . ...... . . . ........ . ... ................... . .. . . . . ..... . ....... . .... . . . . ............. . . . .... .. ... . .. . . . . . . . . . . ... . . . . ... . .. . . . . . . . . . .. ........... . . .. .. . . ..... . . .. ............... .. . .................................... . . . . . ........ . . . . ... .......................................... ......... ... ............ .... . ...... .. ................. . .... . . .. .. . .. ...... . . . ... . . ............................... .. .......... . . . ..... . ....................................... ... . . . . ...................... . . .. ... .............. . ... ................. ... . . ....... ... ... . .. .............. . . .. . . .
lowQualScore : 000 0000 0000 00 5 000 55 0000 7 33 333 33333 3 333333 33 3 3 3 33333 3 33 3 77 7777777777777 333 333 33 3 3 77777 000 77777 33 77777 777 333 777777777 000000000000000000000 0 000 0000 3 3 333333333 0 3 333 3333 3 3 7777 33333333333333333 0 3 3 3 3 3 3 3 0 55 0 5 000 0 55 0 55 0 7777 3333333333333 3 3 3 77 0 55 555 0 2 555555555 2222 88 00 5555555 8 2 555555555 00 555 2 88 0 222222 88 00000 0 555 3333333333 0 0 33 77777777777777777777777777777777777777777777777777777777777777777777777777777 3 333 0 3 9999999999 888888 0 2 2222222 000 0 0 0 8888 00000 0 66666666666666666666666 0 88888 0 0 00 888888888888 00 8 00 8 8 222222222222222222222222222222222222222222222222222222222222222 2222 2 88888888 88 0 88 55 2 0 7 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 33 3 7777 77 0 7 3 333 33 3 3 777777777777 333333333333333333333333333333333333 00000 333 3 333333 33 777 77 7777777 3 00 7 3 77 7777 0000000000000 00 33333 0 3 3 33 0 2 0 22 0 00000000000 5 2 0 0 22222 0 0 000000 0000 0 7 5 7 22 7 7 7 8 2222 8 7 77777 7 7 22 22 7 7 7 7 2 3 7 777 8 0 0 0 8 8888 0000000000 0 2 00000000000 8 222 0 000000 5 5 0 44444444 0 000 3333333333333333333 8 66 0 7 3 7 33333 7 7777777 7 3333 0 3 3 7 7777777777777 3 7 7 3333 33 777 3 77 3 3 5 0 0 0 0 0 0 0 000 0 0 0 0 000 0 00 0 5 0 3 3 3 7 3 3 33 77777777777 3 3 22 88 5 2 00000 8 0 00 666666666666666 00 0 444444444444444444444444444444444444 5 2 5 0 5 88888888 2 5 0 0 555 222222222222222222222222222222222222222222 888888888 000 222222222222 2222 5 222222 00 88888888888888888 8 4444 6 0 00 00 0 00 888888 0 0 2 222 2 2 5555555555555555555555555555555 88 5555555555 2 8 8 55555 0 000000000000000000000000000000000000000 222 0 2 0 0 0000000000000000000000 6 0 00 222 00000000000000 8 000 00000000000000000 000 3 7 0000000 777 000 3 00 77777777777777 3 3 77 3 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACCGCACAGTCGTACCGTGGANNACACGTGAGACTTGTGTAAGGCAGCGGATGA-CGCGCCAGCGG--AAATACAGG-AGTA-----GAG-GAATTA------TCNACCAGTG-TA-AGA-AGAT-----TATGT-TAGACG--AGGTA-TACGTCTGGGGGAA--TAAAGT-TTA---GTACAGA---GATGC-TCGC-CATCGATTAA---C-GC--CGGA-CCG-ATC--AAAAA--T--TGGCGGTTT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTNGGAAGGAATAT--C-TG-CC-GCCG-------TTTCTAG-GCGA---CATGT-AC-TGAAAAAAG-CC-T--CTGA-------------CACCAGTATAGTNTTA-CCAGT-TTT-ATA-CG-TTATTGAACGGC-ACTNCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGAAATTGTTTNGGTGCATAGCAGGCNGGATGTGGGAAAAACCGNTANAGTGATGCGTTTCCGGGGGACGAAGAG-CT-GACA-TAA--TACATA-CAGCACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAATA--CCATGCACA---GCCCCTTTTTACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACACAAA--CATGAA--GTGGGCAGGCAGCCCTA----G----------------CTCGTTAAG-GCG-------AAATTGGCCACCATG--AG---ACTCG---AGCC-GCGCACT---GGGAAAAANCTCAATTGG-CATCATTGC--A-GC----TGGC-A--C-GAGGC-CGGCA-A----CT---GGGAA-AAAA-CTCAATT-GGC--A-CC-----A-TGC----C--CA-GCTT---------GGCA-C----TGA-GCC--CAG--CCA-------CTGGGAA--AAACCC--AATTGGCACCAT-GNGCCAGTG--C-GCTG------------AGAGGACGCGTN-TGGC---AGC---CGANT-AGNCACTGGGGAAA---AAC--CC--ACTG-GCACNATG-CGAGNTGGGCA-C-TG-AGCTAGC-CTGGATGG-AACTCT---ACGA-GC-ATANAAG--AA-GCAA-AGCCG--CTC--GGC-ACTCTA--C----CACTC-T---TCAC-ATC--GACT-TCA-A--CCTGACCTAGAGAGCACAT-GGCT---CAGAAAA--CAGC-TAGAAATTCGTGG-A-CA------AGAGCTCAGAA-----G-AAA----GTGAACGA-TAACA--------TGG-T-A-CAGA---AA-AAGACT---GAGAATGCAA--CA-A-GATT-TCTTGAGCGAA---A---AGAATAGACG-GGGA-GTTACAG-G--AGGCTACTACATTG----ACAGCAGACTGA-AAGAAAGGCCAAGACTGAGGGTTNTTACCTAG-CCA-GAATCCTA--CAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGCAACG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GATTTTG-C-GA-TCATTTCCACN-A-CACTA-G-----A-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TG-CTGAAGAAGC---TGG----------A-AGAACTG------AC--GGGCAAAAATCTA-G-AACCCTAGG-AAGG-A-T--CACTCCAGATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AA-GCAACGTTTATCCGC----AGACCAGTA----AANA-AAGAT-TATCCCGCAG-ACCCCAGT--A-AGAA-ATCCGGC----CGATAAACC--AGCAGAA-CGAAACACAAACA-AAGGGATCCT-TGCTACACAGTGGCGGGNAAATTAGGNACTGGATCAGTGGACTGAGTCCGNAAGGAACAAGCGGAGATCGATGGAANGATGATTGGGCATCCCGCTACCTGGCCCAAAACCCGCTGTGAAGAGANGAGTACAAACCGTTAG-AGA-TGTG-GAATC--CCCGCACCTAA------C-GAAGAACC-GCC-AAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTG-AACTGTTTTTTTAT-GC----TG------AAC--TG-TTT---------AAACGCTTGAACTGT-TTTTA-G-CTGTTTAAAAACTGTTNTGCATTG-------TTTCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATG-------------CA-AGGATTTAATACACAGGAA-TTNAC-GGATTTAT-------ATACACA-GGAATACACA-----------GGATTT----CACTG------GAT--TTT-----A-T--G-C----GATCGA-T-AACACGTTC-C--TA--AGTGTGC-TACA--TTTT------TGA-C-GTCATAATGC--CTCTCCAAGTGCGA-NTTCAAA--AC-G-C--------GCAAT--AGC-TT-CAC---CCTGTGCTAAAACTCG--ACTCTAAACTAGGCCAGCGGCTCAAC-------AGACCG-C-CTA---C--GCC-G---G-C-TCTAAA-CCCGGCCGGGCTC-ACCGG-CTCTAAACC-GGCCGGC------GCTATA-AAC--CCGGCCGGGCTATAG-C------------CCGGCGACCCCTGCTGGG---GTCAAANCT---------CT-TGACCC--GCGTCCTAGCTATTGCAACC--GC---CCAT-CGGGGCCAGACCACCGCTTGAC-CAATCA------GCA----TTGACCTCATTTGCA-TAAAAAGTTGCACTCA-GTTGAACCTCCCTATNGAGGG
Reference ( family-3 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAACCCGACCGCACAGTCGTACCGTGGANNACACGTGAGACTTGTGTAAGGCAGCGGATGA-CGCGCCAGCGG--AAATACAGG-AGTA-----GAG-GAATTA------TCNACCAGTG-TA-AGA-AGAT-----TATGT-TAGACG--AGGTA-TACGTCTGGGGGAA--TAAAGT-TTA---GTACAGA---GATGC-TCGC-CATCGATTAA---C-GC--CGGA-CCG-ATC--AAAAA--T--TGGCGGTTT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTNGGAAGGAATAT--C-TG-CC-GCCG-------TTTCTAG-GCGA---CATGT-AC-TGAAAAAAG-CC-T--CTGA-------------CACCAGTATAGTNTTA-CCAGT-TTT-ATA-CG-TTATTGAACGGC-ACTNCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGAAATTGTTTNGGTGCATAGCAGGCNGGATGTGGGAAAAACCGNTANAGTGATGCGTTTCCGGGGGACGAAGAG-CT-GACA-TAA--TACATA-CAGCACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGT-TT-GAA--GCCGGACATTTTGTA-------AANAAATAA--AAATA--CCATGCACA---GCCCCTTTTTACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACACAAA--CATGAA--GTGGGCAGGCAGCCCTA----G----------------CTCGTTAAG-GCG-------AAATTGGCCACCATG--AG---ACTCG---AGCC-GCGCACT---GGGAAAAANCTCAATTGG-CATCATTGC--A-GC----TGGC-A--C-GAGGC-CGGCA-A----CT---GGGAA-AAAA-CTCAATT-GGC--A-CC-----A-TGC----C--CA-GCTT---------GGCA-C----TGA-GCC--CAG--CCG-------CTGGGAA--AAACCC--AATTGGCACCAT-GNGCCAGTG--C-GCTG------------AGAGGACGCGTN-TGGC---AGC---CGANT-AGNCACTGGGGAAA---AAC--CC--ACTG-GCACNATG-CGAGNTGGGCA-C-TG-AGCTAGC-CTGGATGG-AACTCT---ACGA-GC-ATANAAG--AA-GCAA-AGCCG--CTC--GGC-ACTCTA--C----CACTC-T---TCAC-ATC--GACT-TCA-A--CCTGACCTAGAGAGCACAT-GGCT---CAGAAAA--CAGC-TAGAAATTCGTGG-A-CA------AGAGCTCAGAA-----G-AAA----GTGAACGA-TAACA--------TGG-T-A-CAGA---AA-AAGACT---GAGAATGCAA--CA-A-GATT-TCTTGAGCGAA---A---AGAATAGACG-GGGA-GTTACAG-G--AGGCTACTACATTG----ACAGCAGACTGA-AAGAAAGGCCAAGACTGAGGGTTNTTACCTAG-CCA-GAATCCTA--CAGACC-AGGCTTAGGANTTTTTT-CCCGGAG-TC---G---CAGAAGATGCAACG-GGACTGGAA-CTGGGCCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GATTTTG-C-GA-TCATTTCCACN-A-CGCTA-G-----A-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGGTAA-TGAGATTGG-AA-TCATACC--ACAG-TCC-TG-CTGAAGAAGC---TGG----------A-AGAACTG------AC--GGGCAAAAATCTA-G-AACCCTAGG-AAGG-A-T--CACTCCAGATT-ACGCTACTAACA----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AA-GCAACGTTTATCCGC----AGACCAGTA----AANA-AAGAT-TATCCCGCAG-ACCCCAGT--A-AGAA-ATCCGGC----CGATAAACC--AGCAGAA-CGAAACACAAACA-AAGGGATCCT-TGCTACACAGTGGCGGGNAAATTAGGNACTGGATCAGTGGACTGAGTCCGNAAGGAACAAGCGGAGATCGATGGAANGATGATTGGGCATCCCGCTACCTGGCCCAAAACCCGCTGTGAAGAGANGAGTACAAACCGTTAG-AGA-TGTG-GAATC--CCCGCACCTAA------C-GAAGAACC-GCC-AAAAAGAAGA-AAGAAACTGAGCCGAAAGTAAAAA-----CTTG-AACTGTTTTTTTAT-GC----CG------AAC--TG-TTT---------AAACGCTTGAACTGT-TTTTA-G-CTGTTTAAAAACTGTTNTGCATTG-------TTTCTTTAATAAACATGTAAAACTTAAAC-CTTGGTGTTAGTCTTTATTATG-------------CA-AGGATTTAATACACNGGAA-TTNAC-GGATTTA--------ATACA-A-GGAATACACA-----------GGATTT----CACTG------GAT--TTT-----A-T--G-C----GATCGA-T-AACACGTTC-C--TA--AGTGTGC-TACA--TTTT------TGA-C-GTCATAATGC--CTCTCCAAGTGCGA-NTTCAAA--AC-G-C--------GCAAT--AGC-TT-CAC---CCTGTGCTAAAACTCG--ACTCTAAACTAGGCCAGCGGCTCAAC-------AAANCG-C-CTA---C--GCC-G---G-C-TCTAAA-CCCGGCCGGGCTC-ACCGG-CTCCAA----GGCCGGT------GCTATA-AAC--CCGGCCGGGCTATAG-C------------CCGGCGACCCCTGCTGGG---GTCAAANCT---------CT-GAACCC--GCGTCCTAGCTATTGCAACC--GC---CCNTGCGGGGTCAA---ACCGCTTGAC-CAATCA------GCA----TTGACCTCATTTGCA-TAAAAAGTTGCACTCA-GTTGAACCTCCCTATNGAGGG
gi|1 : TTCTTGT---CTGACCGCACAGTCAT----TGGATAACACG-GAGACTT-T-TAAG--AGCAGA----CGCGCCAACGG--ATAAACAGA-AGTA-----GAG-GAATTA------TCAACCAGTG-TA-AGA-AGAT-----TATGT-TAGACG--AGATGCTATATCTGGG-------AAAAT-TTA---GTACAGA---GATG--TCGC-CATCGATTAA---C-GC--TGGAGCCG-ATC--AAAAAATT--TGGTG--TT---GAGT--AT-----GTATTGCGTCC---CCCAT---G-AAC----AGTGGGAAAGA-TAT--T-TG-CC-GC-G-------TTT--AG-GCGA---CATGT-ACCTGAAAAAAA-CC-TTTCTAA-------------CA--AGTACACGATTA-CCAGT-TTTTATA-CG-T-ATTGAACGGC-ACTTCAAAAAGTATCGGGATTTATTCGAGCTGGAAGAAACACGGCACCGCCAGAAGTGTATGGAGA--TTGTTTTGG-GC-T-GCAGGCTGGATGTGGGAAA--CCGGTAAAGTAATGCGTTTCCGGGAGA-GAAGAG-CTCGACAATAA--TACA------CACATTACCTCCCA-GATC-AT-TGA-CTTACACC-TGTATCT---AGAAG-AAC-------C-GCGTATT-GAA--GCCGGACATTTTGTA-------AAAAAATAA--AAATA--CCAT-CACA---GCCCCTTTTTA-G-GGCCTACTTTAAA-CAAAAT---A-TGAGTG-ACACACACAAAAACAT-AA--GTG--CA--CTGCCCTA----G----------------TTCGTTAAG-GC---------AATTGGCCACCATGCCAGCTGACCTG---AGCC--CGCACT---GGGAAAAACCCTAATTGGGCATCATTGC--A-GC----TGGC-A--C-GAGGC-CAGCA------CT---GGAAA-AAAAGCTCAATTTGGCCCA-CC-----ACTGC----C--AA-GCTG---------CGCA-C----TGA-GCC--CAG--C-A-------CTGGGAA--AAACC----ATTGGCACT----TGCCAGTAGAC-ACTG------------AGA--ACCATTT-TGGC----GC---TGAGTCAGGCACTGGGGAAA---AAC--CC--ATTG-GCACTGTG-CCAGCTGG-CA-CCTG-AGCCAGCACTGGAGAA-AATTTT---ACGG-GCTATAAAA---AG-GCAG-AGCC---CTC--G-C-ACTCT--------CACTC-T---TCAC-ATC--GACT-TCA-GACCCTGACCT-GAGA--ACAT-GGCT---CAGAAAA--CAGCCTAGAAATTCGTGG-A-CA------AGAGCTCAGAA-----GGAAA----GTGAATAA--AACA--------TGGCT-A-CAGA---AA-AAGACT---G-GAATGCAA--CA-AAGATT-TCTTGAGCGAA---A---AGA-TAGACA-GGGA-GCT-CAGCG--AGGCT--TACATGG----ACAGCAG-CTGA-AA-AAAGGCCAAGACTGAGAGTTTTTACCTACTCCACGAATCCTA--CAGACC-AGGCTTGGGATTTTTTT-CCCGGAG-TC---G---CAAAAGATGCA-CGCGGACTGGAA-CTGG-CCTCTACAA--CC-CT-CAG-AAC------GAGCCT----CCG-GCC-ATGAAC-AAAGAA--GATTT-G-C-GA-TCATTACCACC-A-CACTA-G-----A-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGAGATAA-TGAGATTGG-AA-TCATACC--AC-G-TCCTTGCCTGAAGAAGC----GG----------A-A-AACTG------AC--GGGCAAAAATCTAGG-AACCCTAGG-AAGG-A-TTACACTCCAGATT-ACGCTA-TAAC-----C--CGTGCTA-CAC-T-TGCGG------AG--AAA------CAGGACAATTG-GTCGCCGGATTGCCCCCCAGA-AAGGCAGCATTTATCCGC----AGACCAGTA----AAGA-AAGATGTAT-CCGCAG-A--CCAGT--A-AGAA-ATCGGGC----CGATAAACC--AGCAGAAGTAAAACACAAACA-AAGGGATCCTGTGCTACA-AGT-GC-GGTAAATTAGGCACT-GATCAGT-GACTG---TCGCAAGGAACAAGCGGAGATCGATGGAAGGATGATTGGG---CCCGCTACCTGGCTCAAAACCCG-TGTG-AGAGAAGAGTACAAACCGTTAGCAGATTGTGAGAATC--CCCGCACC--A------CTGAAGAACC-GCC-TAAAAGAAGAGAAGAAA-TGAGCCG-AAGTAAAAA-----CTTGAAACTGTTTTTTTAT-GC----TGTTTTAAAAC--TG-TTTTCATTGTTAAAAAACTTGAACTGTATTTTATG-CTGTTTAAAAACTGTTTTACATTG-------TTTCTTTAATAAACATGTAAAACTAAAAC-CTTGGTGTTAGTCTTTA-TATGCAGAGGAATACCACA-AGGATTTTATACACTGGAATTTCAC-AGATTTATGCGATCGATACA-G-GGAATACACAG----------GGAATA----CAC-G------GATA-TTT-----ATT--G-C----GATCGA----------TT-C--TA--AGTGTGC-TACA--TTTT------TGA-CAGTCATAATGC--CTC-CCAAGTGCGATTTTCAGA--A---------------AAT--AGCTTT-CAC---CCTTTTCCACAACTCA--AAGCGAAAGTAGACCA-CGG--CAAT-------AGCCAA-C-CTATAGC--TCC-G---G-CATCTAAA-CCCGGCCATGCTT-ATTAA-C-----------CCGG-------ACTCTA-AAC--CCGGCC-GGC--TAG-C------------CCGGCGACCCCTGCTGGG---GTCAAA------------CT-TGACCC---CGTCCTAGCTATTGCAACC--GC---CCAATCGAGGCCAGACCACCGCTTGACTCAATCAGAAGCCGCATTGCTTGACCTCATTTGCAGTAAAAAGT--CACTCA-GTTGAACCTCCCTATGGAGGG
gi|10 : taatgaaaggcttcgaacacctgtatttataggtgaaaaaaaggtaatgcattcaaccgtgtctgtgcatcacgtgatcaacccccttgtgcgttagtgtgcgttagcattcaTTACCTAG-CCA-GAATATGT--CAAACCCAGCCTTAGGAGTTTTTT-CCCGGAG-TC---A---CA--ATATGCAACG-GAACTGGAA-CTAGGCCTCTACAA--CA-CG-AAG-AATGCATCGGAACCTGAGGCCGCGCCAATGAGC-AAAGAA--GATTTTG-C-GA-TCATTTCCACG------TA-G-----A-C-GGGATCA--TG--AAC-AGAATTAA-TGTGCTG-GGTGA-TGAAATTGG-AACTCATACC--Agggctata
gi|11 : G--AAA------CAGGAAAATCATGTCTTCGGATTGCTCCCCAGACAC-GCGAGATTAATTCGCCATAAGACCAGTAACACAATA-GAGAT-TATCACGCAATACCCCGTT--A-AGAA-ATTCGGCATCGCAGTAATTCGAAACTGAATCGAAAC-TAAAC--AAGGACTCCT-g
gi|12 : GATTT----TACTG------AAT--TTTTTACAA-TTAG-C----GATCGAAT-AACACATTT-CCGTA--AGTGTGCTTACA--
gi|13 : gagatatacacttactgcga--ACTCTAAACTAGGCTA------------------AAGCG-CTCTA---C--ACCCG---G-T-TATAAA-CCCGACCGGGCTC-ACCGGGCTTTAAACCTGGCCG-T------GCTATA-AAC--CCGGCTGGACTA--G-C------------CCGGCGACCCCTGCTGGG---GTCAaactatatttcattacttaattgaaacgattttccatacatgctctacaaaccaaaaacc
gi|14 : cctgcGA-CTTACACC-TGTATAT---AGAAG-AAC-------CTGCGT-TT-GAA--GCCGGACATTTT-TA-------AATAAA-AA--AAAAA--CCATGCACA---GCC--------------CTACTTTAAAACAAAAT----ATGAGTG-AC--ACAC
gi|16 : -----CTTG-AACTG--TTTTCAT-GCTTATTG------AAC--TG-TTT---------AAA
gi|17 : gggactgtgTTTATT------ATGCACA-GGAATACACA-----------GGATTTAAAACACTG------Gacattgtgc
gi|2 : AGAGTCG-GACA-TAA--TA-ATA-CAGCACATTTACTCCCA-GATC-AT--GA-CTTACAC--TATATCT---AGAGA-ATC-------T-GCGT-T--GAA--GCCGGACATTT-GTA-------AA--AATAA--A--CA--CCATG-ACA---GGCCTTTTTGACG-GGGCTACTTTAAAACAAAAT---AATGAGTG-ACCGACACATA--CATGAA--GTGGGCAAGCAG--CTA----G----------------CT--TTGAGAGCG-------A----------CATA--AG---ATTCGATAAGCTAGTGC-CT---GGGAAAAAACTCAATTGG-CACCATGCC--A-GCAGTATGGC-AACT-GAGAC-CAGC--A----CT---GGGAAGAAAA-CTCAATT-GGC--A-CCATGGGA-TGCGCTGC--CA-CCTTGAAAAAAAAGACG-CGTCATGG-CCC--CAA--CCGAATGCCTTTGGGAA--AAAACCAGAATTGGCACCATCGAGTTAG-G--CAACTG-------------GAGGTCGCGGA-TGGT---AACTCGCGACT-AGA-----GGTAAATGCAATGGCC--GCTG-GCACACTA-CGA
gi|2 : gagc----CT---GGGAA-AAAA-CTCAATT-GGC--A-CC-----A-TGC----CAGCA-GTAT---------GGCAAC----TGA-GAC--CAG--C-A-------CTGGGAAGAAAACTC--AATTGGCACCAT-GGG---ATG--C-GCTGCCACCTTGAAAAAAAAGACGCGTCATGGCCCCAAC---CGAAT--GCCTTTGGGAAAA---AAC--CAGAATTG-GCACCAT--CGAGTTAGGCAAC-TGGAGGTCGC---GGATGGTAACTC----GCGA--C--TAGAGGTAAATGCAATGGCCG--CT---GGC-ACACTA--CGATGCACTCCT---TCACTATC--GACT-TCAGA--CCTGACC-AGAGAACA-AT-GGCT---CAGAACA--C-GC-TAGAATTGCGTGG-AACA----------CTCAGAA-------AAA----GTGAA----TAACA--------TGG-T-ATCAGA---AAGAAGAC----GAGAATGCAA--CA-A-GATT--CTTGAGCGAAGTAA---AGAATAGACA-AG-A-GT-ACAG-G--AGGCTAC---ATTA----ACAGCA-ACTGA-CGG----GCCCAGACTGAAGGTTATTTCCTAG-CCA-GAATCCTAGGTAGACC-AGGCTTTGGAATTCTT--CCCGGAG-TC---AT--CA--AGAT-TAACG-GGACTGGAAACTGGGCCACTACAA--ATGCT-CAGGAAT------CAACCT----CCG-GC--ATGACA-AAAGAA----TTTTGGC-GA-TCATT-ACACG-AACACTA-G-----ATC-GGAATTGATTT--AACACGCATTAA-TGTGCTGAG-TAAGTGAGAT-GG-AA-TCATAC---ACAG-TCC-TG-CTGA-GAAGC---TGG----------ATAGAACTGT-----AC--GGGAAAAAATCTA-G-AACCTTAGGGAAGGCACT--CACTCCTGATTCACGCTACTAATA----CGGCGTGCTAACAC-TCTGCGG------TG--AA-------C--GAC--TTG-GTCGC-GGAT-GCCC---AGA-AA---AACGATTATC-------AGACCA-TA----AGAACAGGAT-TATCCCGCAG-ACT--AGTTGACAGAATATCTG-C----CGATTAACC--AGCAGA---GAAAAACAATCAGAAGGGA-CCT-TGC-ACACAGTGGCGGGGAAATTAGAAACTGGATCAGTGGACTGAGTCCGGAAG-AACAAGCGGAGATCGATG-AATAATGATTGGACATCCCG-TACCTGGCC--AAACCTGCTGTGAAGAGACGAG---AAAACGT-AG-AGAGTGTG-GA-TC--CCCGCACCTA-------C-TAAGAACCCGCT-AAAAAGAAGC-AA-AAACTGAGCCGAAAGTAAAAC-----CTTG-AACTGTTTTTTTATAGC----C--------ACGGTGGTTT---------AAGCCCTTAGGGTG------A-GGCTGTTTTA----TGTCTTG----G-------TGTGTTTA-TAAACATGTAAGACTTAGATACTTGGTGTTAGTCTTTATTATG-------------CA-AGAA-TTAA-GCACAGGAA-TGAACTGGATTT---------CTGCG-ACGGCATA-ACA---------------TT----CGCTAAAGTGTGATCATTT-------T--GAC----G-TC-A-T-AGCATGCTCTC--TGGCAGTGT-C-CAGA--TTTCAGAAAATGAGC-TTCA----GC--CTTTCCA----CGA-ACTCAAA--ACAG-TAGACCACGGCAAT--AGC----CAA---CTTAT----AAAC-CGAAACTCTAAACCCGGCTCGGGGCTCAACGGGCAATAAAGCG-----A---C--GCC-GAGTG-C-TATAAA-CCCGGC--GGCTCGACCGG-CTCACA----GGCCGAT------GCTATATAACTTCAGGCCGTGCTATAA-------------------GAACGC-GCCGGGTCACTCGGGCCT---------CTAAAACCC--GCG-GCTGGCCGGTGCTACCCGGCGAACCCTGCTGGGTCAA---ACTGC-TGA--CAATCA-------CA-----TGACCTC-TTTGCA-TACAAAGTTGCACTCAGGTTGAACCtgcactccttcactatcgacttcagacctgaccagagaacaatggctcagaacacgctagaattgcgtggaacactcagaaaaagtgaataacatggtatcagaaagaagacgagaatgcaacaagattcttgagcgaagtaaagaatagacaagagtacaggaggctacattaacagcaactgacgggcccagactgaaggttatttcctagccagaatcctaggtagaccaggctttggaattcttcccggagtcatcaagattaacgggactggaaactgggccactacaaatgctcaggaatcaacctccggcatgacaaaagaattttggcgatcattacacgaacactagatcggaattgatttaacacgcattaatgtgctgagtaagtgagatggaatcatacacagtcctgctgagaagctggatagaactgtacgggaaaaaatctagaaccttagggaaggcactcactcctgattcacgctactaatacggcgtgctaacactctgcggtgaacgacttggtcgcggatgcccagaaaaacgattatcagaccataagaacaggattatcccgcagactagttgacagaatatctgccgattaaccagcagagaaaaacaatcagaagggaccttgcacacagtggcggggaaattagaaactggatcagtggactgagtccggaagaacaagcggagatcgatgaataatgattggacatcccgtacctggccaaacctgctgtgaagagacgagaaaacgtagagagtgtggatccccgcacctactaagaacccgctaaaaagaagcaaaaactgagccgaaagtaaaaccttgaactgtttttttatagccacggtggtttaagcccttagggtgaggctgttttatgtcttggtgtgtttataaacatgtaagacttagatacttggtgttagtctttattatgcaagaattaagcacaggaatgaactggatttctgcgacggcataacattcgctaaagtgtgatcattttgacgtcatagcatgctctctggcagtgtccagatttcagaaaatgagcttcagcctttccacgaactcaaaacagtagaccacggcaatagccaacttataaaccgaaactctaaacccggctcggggctcaacgggcaataaagcgacgccgagtgctataaacccggcggctcgaccggctcacaggccgatgctatataacttcaggccgtgctataagaacgcgccgggtcactcgggcctctaaaacccgcggctggccggtgctacccggcgaaccctgctgggtcaaactgctgacaatcacatgacctctttgcatacaaagttgcactcaggttgaaccacgaggacggcgcgtttagtatact
gi|3 : gagcagagtcggacataataatacagcacatttactcccagatcatgacttacactatatctagagaatctgcgttgaagccggacatttgtaaaaataaacaccatgacaggcctttttgacggggctactttaaaacaaaataatgagtgaccgacacatacatgaagtgggcaagcagctagctttgagagcgacataagattcgataagctagtgcTTCTTGTAACCCGACC----AGTTGTACCGTGGAATACACGTGAGATTTGTGTAAGGCAGCGGATGATCGCTCCAGCGGGAAAGTACA-G-AGCAATTTCGGGCGAATTACTTTGTTCT-TCAGTG-TATAGATAGATTTTTCTGTCT-TAGACACTGGGTA-TACATCTGAGGGAAACTA---T-TTAATGGTACATAATTGATGT-TCGC-CATCGA--AATTTC-GCCTCGGA-CCATATC--AAAAA--TCGTGGCGGTTT---GATT--ATTCTTAGTATTGCGTCCCATCTTATTTCG-AACTCGTAGTTGGAAG--ATAT--CTTG-CCTGCTGATTTGTTTTTCTAGAGAGAACCCATGTAAC-TG--AAAAG-TCGT--CTGATGATAACCGTATCCACTAGTATAGTCTTAGCCAGT-TAT-ATAGTGTTTAATGAACGGCTACTACAAacgaggacggcgcgtttagtatact
gi|3 : TATGGAGAAATTGTTTGAGTGCATAGCAGGCAGGATGTGGGAAAAACCGTTAC-GTGATGCGTTTTCAGGGGACGAAGAG-CT-CACA--AATTTACCTAGCAGCACA-TACATCACACGAACTATATGAGCTTACACCGTGTTTCTATCAGAAGCAGCAGCCTATC-ACAT-TTAGAAGTGCTGACCAGTTGCTACTCAACTAGCATATAATTAGGTAGTCTATGCACAAGCGTCCCTTTTTATATGTGCTACTTTTAAA-AAAATGGAAATTTATATACCG---CAAA--GTCGGACTGTAAGCAGGCAGCTCTGTCACGGATAACACCCATTGCTCTCGTTAAGTGCATCCGTCCAAATTGGCCACT-----AG---ACTCG--------GCATACTAGAGGTAGAACTCTCAATTGG-CATCCATGCCTACGCT---TGGC-A--CTGAAGC-CTACA-GATCCCT---CGGAA-AAAA-CTCAATT-GGC----CC-----A-TGG----C--CA-GTCT---------GG-A-C-----GA-G-C--CAG--TCA-------CTGGGGA--AA--CC--ACTGTGCACAAT-Gtgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaattggccactagactcggcatactagaggtagaactctcaattggcatccatgcctacgcttggcactgaagcctacagatccctcggaaaaaactcaattggcccatggccagtctggacgagccagtcactggggaaaccactgtgcacaatgtcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|3 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagc----TGGCCA--C-TAGACTCGGCATA----CTAGAGGTAG-AACT-CTCAATT-GGC--ATCC-----A-TGC----C--TACGCTT---------GGCA-C----TGAAGCCTACAGATCCC-------TCGGAAA--AAACTC--AATTGGC-CCAT-G-GCCAGT------CTG----------------GACG------------AGC---C-----AGTCACTGGGGAAA--------CC--ACTGTGCACAATGTCAAGATGGGCA-G-T----CTACCTCTGGCT------TCTCAAATGAAGC-AGATAAG--AA-GCAA-AATCGAGCTCTGGGCGACTCTAATC----AAATC-GGGGTCAC-ATCCTGACTATCA-A--CCTGACCTAGAGAGCACATGGGCTGCGTAGAAACTTCAGC-TAGAAATTCGTGGTA-AAGTATGCAGAGCTTAGAGTACACG-AAAACACGTGGACGACTACCATTCATTTGTGG-TAA-CAGATACAA-TAGTCTCGAAAAAATGCAAACCACA-GATTGTCTTGAGCGCA---CGTTATAATGTACGCGGGAGGTTACAG-GCCAGGTTACTATTTTGTATCACAGCAGACTGATAAGAAAGGCAAGAATTGAGtcaagatgggcagtctacctctggcttctcaaatgaagcagataagaagcaaaatcgagctctgggcgactctaatcaaatcggggtcacatcctgactatcaacctgacctagagagcacatgggctgcgtagaaacttcagctagaaattcgtggtaaagtatgcagagcttagagtacacgaaaacacgtggacgactaccattcatttgtggtaacagatacaatagtctcgaaaaaatgcaaaccacagattgtcttgagcgcacgttataatgtacgcgggaggttacaggccaggttactattttgtatcacagcagactgataagaaaggcaagaattgag
gi|4 : ttcttgtaacccgaccagttgtaccgtggaatacacgtgagatttgtgtaaggcagcggatgatcgctccagcgggaaagtacagagcaatttcgggcgaattactttgttcttcagtgtatagatagatttttctgtcttagacactgggtatacatctgagggaaactatttaatggtacataattgatgttcgccatcgaaatttcgcctcggaccatatcaaaaatcgtggcggtttgattattcttagtattgcgtcccatcttatttcgaactcgtagttggaagatatcttgcctgctgatttgtttttctagagagaacccatgtaactgaaaagtcgtctgatgataaccgtatccactagtatagtcttagccagttatatagtgtttaatgaacggctactacaatgtaagatgacaggtgttgctcggtcgctatcttattgctgactcaagagtaaaatccaccgtacactcgtgttaggttagctatggagaaattgtttgagtgcatagcaggcaggatgtgggaaaaaccgttacgtgatgcgttttcaggggacgaagagctcacaaatttacctagcagcacatacatcacacgaactatatgagcttacaccgtgtttctatcagaagcagcagcctatcacatttagaagtgctgaccagttgctactcaactagcatataattaggtagtctatgcacaagcgtccctttttatatgtgctacttttaaaaaaatggaaatttatataccgcaaagtcggactgtaagcaggcagctctgtcacggataacacccattgctctcgttaagtgcatccgtccaaatGAGTACAAACCGTTAG-AGA-TGTG-GAATCTGCCCGTACCTAAACAAAGT-GAAGAACC-GCCTAAAAAGAAG--AAGAAACTTAGCCGAAAGTAAAAA-----C-GG-GACTGTGCTTTAGT--------G------AAC--TG-TTT---------TTATGCTT-AACTGT-TTTT-----------AAAAC-ATTGTGCATTGTTCTTGTTTTCCTTAATAAACATGT-AAACTTAAAC-CTT-GTGTTATTCTT-----------------------GGGATTTA-------------TTAT-GGATTTA--------ATACACA-GGAATACACA-----------AAATTT----CACAG------GAT--TTT-----A-T--G-CCTTGGATCGA-T--ACACATTC-C--TA--AGTGTGC-TACATTTTTT------TGA-C-GTCATAATGCTTTTCTCCAAGTACAG-C--CAAATGAC-GTC--------ACAATAGAGC-TCGCGCT--CCTGTGCTAAAACCTGC-ACTCTAAACTAGCCCAGCGG--CAAT-------ACAC---T-CTA---C--GCC-ATACG-C-TCTGAACCCCGGCCGGGCCT-ACCGG-C-----------------------CTCTA-AAC--TCACCCGTGCTATAG-C------------CCGGACACCCCTGCAGGG---GTCAAATCG---------CT-TGACC
gi|4 : aCGCTTGAC-CAATCA------GCA----TTGACCTCATTTGCA-TAAAAAG-TGCACTCA-GTTG-ACCTCCCTATCGAGGGaatcagcattgacctcatttgcataaaaagtgcactcagttgacctccctatcgaggg
gi|5 : agagtacaaaccgttagagatgtggaatctgcccgtacctaaacaaagtgaagaaccgcctaaaaagaagaagaaacttagccgaaagtaaaaacgggactgtgctttagtgaactgtttttatgcttaactgtttttaaaacattgtgcattgttcttgttttccttaataaacatgtaaacttaaaccttgtgttattcttgggatttattatggatttaatacacaggaatacacaaaatttcacaggattttatgccttggatcgatacacattcctaagtgtgctacatttttttgacgtcataatgcttttctccaagtacagccaaatgacgtcacaatagagctcgcgctcctgtgctaaaacctgcactctaaactagcccagcggcaatacactctacgccatacgctctgaaccccggccgggcctaccggcctctaaactcacccgtgctatagcccggacacccctgcaggggtcaaatAAGAAGA-A-GAAACTGAGCCGAAAGTAGAGATGGTGCTTG-AACTG--TTTTTAT-GC----TG------AAC--TG-TTT---------AAA------AACTG------------ATTTAAAAAC-ATTGTGCATTG--------TTCTTTAATAAACATGT-AAACTTAAAC-CTT-GTGTTAGTCTTTATTATG-------------CACAGG----AATACACA-----------GGATTTA--------ATACAGA-GGAATACACAAGAATTTTACTGGATTT----CACTG------GAT--TTT-----A-T--G-C----GATCGA-TAAACACATTC-C--TA--AGTGTGC-TACAG-TTTT------TGA-C-GTCATAATG---CTCTCCAAG-------TCCAAA--AC---C--------G-AAT--GAC-TT-CACAATCCTGTGCTAAACCTGC--ACTCTCAACTAGGCCAGCGGCTTAACT------AGACCGAC-CTA---TAAACC-G---GCC-TCTAAA-CCCGGTC-GGCTC-ACCGG-CTCTAGACCCGGCCGGCTCACCGGTTATA-AAC--CAGGCCGGGCTCTAGACACGGCCGGGTAGCCGGCGACCCCTG-TGG------CAAAACTGCGCATGTCCT-TGACCCCAGCGTCCTAGATATTG-AACC--AC---CCAT-CGGG
gi|6 : GAA-CTGGGCCTCTACAGATCC-CTGCAG-AAC------GAGC-T----CCG-GCC-AGGAAC-AAAGAA--GATTTTG-CGGA-TCATTACCACC-ACCACTAGG-----A-CGGGGATCG--TTAGAAC-CGCATTAATTGTGCTGAGGTAA-TGAGATGGG-AA-TC-TACCGAGCAGTTCC-TG-CTGAAGAAGCTATTGGCACGTTTCCCA-AGAACTGGGTATCACGTGGGCAAAAATCTA-GTAACagcgtttatac
gi|6 : ATT-ACGCTACTAACATCCTC--CGTGCTA-CACCT-TGCGGTTGTTCGGCCAAA------CAGGACATTTG-GTCGCatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatattacgctactaacatcctccgtgctacaccttgcggttgttcggccaaacaggacatttggtcgc
gi|7 : gaactgggcctctacagatccctgcagaacgagctccggccaggaacaaagaagattttgcggatcattaccaccaccactaggacggggatcgttagaaccgcattaattgtgctgaggtaatgagatgggaatctaccgagcagttcctgctgaagaagctattggcacgtttcccaagaactgggtatcacgtgggcaaaaatctagtaacatactgattcgtctttttcgtgtaaggcccactaatcaaggatctctacacaatgctttcttgatatATGA-CGCG--AGAGG--AAATACAGGCAATA-----GAG-GAATGA------TTCACCAGTTCTA-GGA-AGAT-----TATGGATAGACG--AAGTA-TA-GTCTGGCGGAA--TAAAGTGTTA---GTACAGA---GATGCGTCGCGCATCGATTTA---CAGC--TGGA-C-G-ATCTAAAAAA--T--TGGGTGTTTTATGAGTTCAT-----GTATTGCGTCC---CC-AT---GGAAC-----GTAGGAAGGAATATTAC-TGGCC-GCCG-------TTTTTAG-GCGA---CATGT-A--TGAAAAAAGACC-T--CTGG-------------TATCAGTCTGGTTGTA-CAAGTGCTT-ATA-CG-TTATTGAACGGC-ACTGCTAA
gi|8 : gcCC-AGGCTTAGGATTTTTTTTCCCGGAGATCCCAGAATCAGAAGATGTAACA-GGGATGGAA-CTGGGTCTTTACAA--CC-CT-CAG-AAT------GAGCCT----CCG-GCC-ATAAAC-AAAGAA--GATTTTG-C-GA-TCATTTCCACG-A-CACTA-G-----A-C-GGGATCG--TT--AAC-CGCATTAA-TGTGCTGA-GTAA-TGAGATTGGAAA-TCATACC--ACAG-TCC-TA-CTGAAGAAGC---TGG----------A-AAAACTG------AC-----C-----TCTA-A-AAACCTAGG-AAGGAA-TA-CACCCCAGATT-ACGCTACTAAC-----C--CGTGCTA-CAC-T-TGCGG------AC--AAtgaaagatttggg
gi|9 : gacCC-ATGACCCAAAGAATAGATTTTG-C-TACTCATTTCCACCCA-CGTTA-GGTTAGA-C-GGGATAG--TC--AAC-AGAATTAA-TGTGTGGAGA-GA-TGAGATTGGAAA-CCATACA--AGAA-TCC-TA-CTGAAGAAGA---TGA----------A-GGAGCTG------AC---GGCAAAAAT--------CCCAAGG-ACGG-A-----ACT---------CGCCACTAAC-----C--CATGCTA-CAC-C-TGTGG------AG--AAATACTAGTAGGAC-ATTG-GT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CCCCCAAACTTGACCCAAGTTAATATATAACTTATTTGTTACCTGCGTCCGCCCGTTAGGTACTAG
Unaligned ( gi|18 ): GCATCCTAGATATTGAACCGGCCATCAGGACAGTTTATA