lowQualScore : 11111 111 11 33333333333333 1111 1111 1111111 111 2222222 333333333333333 444444444444444 1 22222 1 11 1111 1 22222 2 2222222 2222222 222222222222 11111 111 444 444444444444444444444 11 3333333333333333333333333333 11 111 1 111 11 1 1 2222 22222222 1 111 111111 1111 33333 11 4
lowQualScore : 6 66666 000 99 99 6 6 6 5 77 00000000000000 77 1111 6 99 1111 3 6666666 444 5 5 0 66666 5 999999 2222222 6 111111111111111 6 99 6 6 1 2 6 5 222222222222222 6 6 3 0 3 2 22222 0 77 44 9999 6 77777 1 8 6 9999999 0 8 0 9 7777777 2 333333333333 0 5 8 9 8 33333 3 1 333 6 4 6 6 6 6 6 6 3 6 555 5 8 444444444444444444444 33 6666666666666666666666666666 33 777 0 77 777 33 3 0 0 1111 3 11111111 5 0 777 2 88 1 8 666666 0000 777 00000 4 4 22 0
lowQualScore : . ..... ... .. .. . . . . .. .............. .. .... . .. .... . ....... ... . . . ..... . ...... ....... . ............... . .. . . . . . . ............... . . . . . . ..... . .. .. .... . ..... . . . ....... . . . . ....... . ............ . . . . . ..... . . ... . . . . . . . . . . ... . . ..................... .. ............................ .. ... . .. ... .. . . . .... . ........ . . ... . .. . . ...... .... ... ..... . . .. .
lowQualScore : 0 77777 222 00 22 7 7 7 7 99 77777777777777 99 2222 7 22 7777 5 7777777 333 7 7 7 99999 2 333333 3333333 7 222222222222222 7 22 7 7 0 5 7 3 999999999999999 4 5 2 0 2 2 00000 0 00 00 0000 0 00000 6 0 6 8888888 8 0 8 6 8888888 2 666666666666 6 0 0 8 2 44444 3 0 000 7 0 7 7 7 7 3 7 0 7 222 0 0 333333333333333333333 88 8888888888888888888888888888 88 555 0 00 000 88 5 0 0 2222 2 55555555 0 0 555 5 00 2 0 555555 6666 000 00000 0 0 00 0
consensus : NGTAGGGGAAACTGTTGATAT-----TTC--GGACACC--TCGCTA--TGAATTTC-GGAA-ATGCTC-TTC-GTCTAA--CCACT--G-----------AACATA--GGCTTAT-CG-TATA-TCG--GTAGTAAAAACGAACATTCT---AG--ATTGT--GTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACT-ACA-TATGAACATTTAAA--CG--AAGTCAGATAGAAGG---T---TATA-AC-----T-TCGG-AC-GG-TGGT--GTTG-CAACTT-CGGACGCATGGT-GTTGTAACTTCGGACA----GT-TTCT--A-AATTNGGTTGTTTCCTT-TTATTCTGTGGTTCG----ATGA-CATTTTATGCTCTCGTTTT--TGGCACAC----TAGAAGC-TGAATTATTTTA-T-ATAATAG-TTTTGATTTTGTTTGTAATCTTTGAATTA--TATC-GNTAANTTTTAC-CGGGAAAGTAGGTCTCNGG-AGGACTTCATTTTGCC-NATCAAA-CAAANTGG-ATGGTGGCGA-CNTTCAC-TNCAAAG-TTA---GTGAA-GGTCAT-G---T---T--AAT-T----CAACC--AATCAG-ATC-TTANTTA--C-ACGCGCGCAN--ATAATTA--GGTGTTTT---CCAT-TTCGTAAATATATCGAG-T-TCAGATAC--AAGTTTAAATNTAGAA-CAA-GTAAC----AAAAGAAACGCNAAATATAGA-G---CNTTTNNATCGACT-GTCCGAAA---T-ATCACAC----C---G-----T-CCGA-AATNTCAACAGTTTCCCC-TAT
Reference ( gi|1 ) : TGTAGGGGAGACTGTTGATAT-----TTT--GGACACC--TCGCTA--TGAATTTC-GGAA-ATGCTC-TTC-GTCTAA--CCATT--G-----------AACATA--GGCTTAT-CG-TATA-TCG--GTAGTAAAAACGAACATTCT---AG--ATTGT--GTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACT-ATA-TATGAACATTTAAA--CG--AAGTCAGATAGAAGG---T---TATA-AC-----T-TCGG-AC-GG-TGGT--GTTG-CAACTT-CGGACGCATGGT-GTTGTAACTTTGGACA----GT-TTCT--A-AATTCGGTTGTTTCCTT-TTATTCTGTAGTTCA----ATGA-CATGCTATGCTCTCATTAT--TGG-ACAC----TAGATGC-TGATTTATATTA-A-ATAATAG-TTTTGGTTTTGTTTGTAATCTTTAAATTA--TATT-GGTAACTTTTAC-CGGAAAAGTAGGTCTCTGA-AGGACTTCGTTTTGCC-TGTCAAA-CAAAATGG-ATGCTGGCGA-CGTTCAC-TTCAAAG-TTAAGGGTGAA-GGTCAT-A---T---T--AAT-T----CAACC--AATCAG-ATC-TTAGTTA--C-ACATTCACAT--ATAATTA--GGTGTTTT---CCAT-TTCGTAAATATATCAAG-T-TCAGATAT--AAGTTTAAATTTAGAA-CAA-GTAAC----AAAAGAAATGCGAGATATAAA-G---CGTTTAAATTGACT-GTCCGAAA---T-ATCACAC----C---G-----T-CCGA-AATTCCAACAGTTTCCCCATATGTATTAA
gi|4 : GTAGGGGAAACTGTTGATAT-----TTT--GGACACCAGTGGCAA--TGAAATTC-GACA-ATGCTC-CTC-GTCTAA--CCATT--GTTAGAACAGTAAACATA--GACTTAT----TACA-TC-----------AACGATCATACC---GG--ATTGT--ATTCTCTGGA-TTCATCCAGATTTTTT--TTCTGTTTATGTC-ACA-AATAAAAATTTAAA--CG--AAGTCAGATTGAAGGGTATACATATA-AC-----T-ATGG-AC-GA-TGGT--ATTG-CTACTT-CAGACAACTGCT--TTATAACTAAGGACA-------CTCT--G-AATTTTGTCATTTCCTT-TCATTTTCTGGGTCG----GTAA-TATTTGATGGTAT--TTTT--TGGCACAC----TAGAAGT-TGAATTATTGTA-T-GTAGTAG-T----ATTTTG------ATCTTTGAATTA--TATC-GTTCAATTTTAC-AGGGAAATTATGTGTTTAAGAGGACTTCATTTTGTC-GATCTAA-CAAATTGG-GTGGTGGCGA-CATTCAT-TGCAAAG-TTA---GTCAA-GGCCATGA---T---T--
gi|3 : TAAGGAAAACTGTTGATAT-----TTC--GGACACC--TCGCTA--TGAATTTC-GGAA-ACGCTC-TTC-GTCTAA--CCACT--G-----------AACATA--GGCTTAT-CG-TATA-TCG--GTAGTAACAACGAACATTCT---AG--ATTGT--TTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACC-ACA-TATGAACATTTAAA--CG--AAGTCAGATAGAAGG---T---TATA----------------------------------ACTT-CGGACGCACGGT-GTGGTAACTTCGGACA----GT-TTTT--TTAATTAGGTTGTTTCCTT-TTATTCTGTGGTTCA----ATGG-CAT-TTATGCTCTCATTTT--TGC-ACAC----TAGAAGC-TGATTTATTTTG-T-ATAATAG-TTTTGATTTTGTTTGTAATCTTTAAACGG--TATC-GGTAACTTTTAC-CGGGAAAGTAGGTCTTAGG-AGGACTTCATTTTTCCCTATCAAG-CAAAATGG-ATGCTAACGG-CTTTCAC-TTCAAAG-TTA---GTGAA-GGTCAT-G---TATTT--AAT-T----CAACC--AATCAG-ATC-TTAGTTA--C-ACATGCGCAA--ATAATTATAGGTGTTTT---CCAT-TTCGTAAATATATCAAG-T-TCAGATAT--AAGTTTAAATTTAGAA-CAA-GTAAC----AAA--------------TAAA-G---CTTTTTAATTGACT-GTCCGAAA---T-ATCACAC----C---G-----T-CCAA-AATTCCAACAGTTctat
gi|14 : TAGGGGAAACTGTTGATAT-----TTC--GGACACC--TCGCTT--TGAATTTT-GGAA-ATGCTC-TTC-GTCTAA--CCATT--G-----------AACA
gi|11 : acTAGGGGAAACTGTTGATATCGTTGTTTCCGGA-ACCT-TCGCTATTTGAATTTTAGGAATATGCTCTTTC-GTCTAATTTCATTG-G-----------AACA
gi|18 : TAGGGGAAACTGTTGATAT-----TTC--GGACA
gi|12 : caaaAGGGGAAACTGTTGATAT-----TTC--GGACACC--TCGCTG--TGAATTTT-GGAA-ATGCTC-TTC-ATCTAA--CCATCTGG-----------AGCATA--GG
gi|5 : TA--TGAATTTC-GGA---TACTC-TTAAGTCTA---CCACT--G-----------AACATACTGGCTTAT-CG-TATAGTCGTCACAGT-AACACG-ACATTCT----G--ATTGT--GTTTTCGCGG-TTCATT-GGATTTTT--CCGCTATTCATATT-ACA-TATGAATCTTTAAAACCG--AAGTCAGATAGAAGG---T---TATA-ACTTTAAT-TCGG-AT-GG-TGGT--GTTG-CAA-TT-C-GACACATGGTGGTTGTAAC--TAGACA----G---TCTA-A-AATTAGGTT-TTTCC-T-TTATTCTGTGGTTCC----ATGACCATTTTATGCTCTCATTTT--TGC-ACA-----TAAA-GC-TGAATTAT-TTA-ATAT-ATAGCCTTTGATTTT-TTTTT-ATCTTTAGA-----------------TTTAC-CAG-GTAGTAAGTCTC-GG-AGGAGCTTATTTTGCC-TATCAAA-TAAAA--------TGGCGACCTTTCAC-TTC-AAG-TTA---GT-AA-GGTCAT-GTATT---T--AAT-T----CAACC--AATCAG----------TA--C-ATGCGCCCTA--ATAATTA--GGTGTTTT---CCAT-TTCGT
gi|6 : -GTTTTA--CCACT--G-----------AATATA--GTCGTAT-TA-TATA-TCG--ATTGCTTCATTGAACATTCCTGAAC--ATTGT-----TTCGGGT-GTCCTC-GGAATTTTTCATG----TTATACT-------TGCACAGCTAAA--C------TCG---AGAA----------ACA-AC----------G-ATAGG-TCGTATGTTG-TAACTT-CGAACA-GTGGT-GTTATTATTTCGGACACATGGTGTTAC--A-ACTTCGG
gi|2 : --GGCTTATGCGGTATA-TCG--GTAGTAAAA-CGAACATTCT---AGTAATTGTTGGTTTTTCGGTGTTCATC-GTATTTGTTCCTGCTATTTATACTCATAGTATGAG-ATTTAAA--TGTAAGGTCAGATAGAAGG---G---TTTAGAC-----TGTCGGGAC-GGGTGGT--GTTGGCAACTTTCGGACGCATGGT-GTTGTAACTTCGGACAAT--GT-TTTTTAA-AATTTTGTTGTTTCCTTATTA-TCTGTAGTTGATTATATGA-CATGCTATGCTC-CATTTTTGTGG-ACA-----TAGAAGCTTGATTTATTTTACA-ATAATAG-TTTTCGTTTTGTTTGTAATTCTTTAATTAAGTATCGGGTAACTTTTACGCGGAAAGGTAGGT-TATGA-AGGACTTCGTTTTG-G-TGTCAAAGCAAAATGGAATGCTGG-GA-CGTTCACGTTCAAAGTTTAAGGGTGAAGGGTCAT-A---T---TGAGATGT----CAACCTGAGTCAGTATCGTTGTTTAAGCGACAGTCGCACTGATAGTTA--GGTGCTTTATCTCATGTTTGTGAATATATCGAGTT-TTAGATAC--AAGTTTATGTGTAGAAGCAAGGTAAC----AAAAGAAGTGCGAGATATAGACG---CGTTAATATCGACTGGTCCGAAATATT-ATCAGAC----C---G-----TACCGATAATT-CAACAGTTacag
gi|7 : --GGCTTAT-CG-TATA-TCG--GTAGAAAAAACGAACATTCT---AG--ATTGT--GTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACT-ATA-TATGAACATTTAAA--CG--AAGTCAGATAGAAGG---T---TATA-AC-----T-TCGG-AC-GG-TGGT--GTTG-CAGCTT-CGGACGCATGGT-GTTGTAACTTCGGATA----GT-gtcgcgtagtctt
gi|16 : GT-TTCATT-GGATTTTTTCCTGCTATTTATATT-ACA-TATc
gi|9 : TGTTTTTGTTTT--TGGCACACGTAGTAGAAGT-TGAATTATTGTA-T-GTAGTAG-TTTTG------------ATCTTTGAATTA--CATC-ATTAAATTTTAC-AGGGAAATTAGGATTCGGG-AGAACTTCATTTTGCC-GATCAAA-AAAATTGG-ATGGTGGAGA-CATTCAC-TGCAAAG-TTA
gi|10 : tCTTCATTTTGCC-GATCAAA-CAAATTGG-ATGGAGGAGA-CATTCAC-TGCAAAG-TTA
gi|8 : aacattccagaaaaatttagtgtactacatgtaggtaanTGAA-GGTCAT-----C---T--ATT-TGAGGCGACC--AATCGG-AGC-TTAAC-A--C-GCATGCGCAC--TTAAATC--GGTGTTTT---CCAA-TTTGTAAAAATATCGAG-GATCATAAAC--AACTTTAAATATAGAA-CAG-ACAAC----AAAAGAAA-GTAAATTATATG-G---CTTTTTTATTGACT-GTCCGAAA---T-A
gi|13 : TATAT---G-T-TCAGATGTTTAAGTTTAAATTTAGAA-CAA-GTAATAACAAAAAGAAACGCTAAATATCGA-GGGCCGTTg
gi|3 : TTAAAAAAACT-GTCCGAAGT--T-ACCACACCGTGC---G-----T-CCGA-AGTTATAACc
gi|6 : taaggaaaactgttgatatttcggacacctcgctatgaatttcggaaacgctcttcgtctaaccactgaacataggcttatcgtatatcggtagtaacaacgaacattctagattgttttttcgggtttcatcggattttttcctgctatttataccacatatgaacatttaaacgaagtcagatagaagT-GTCCGAAA---TAATAACAC----CACTG-----T-TCGA-AGTTACAACAttaggttgtttccttttattctgtggttcaatggcatttatgctctcatttttgcacactagaagctgatttattttgtataatagttttgattttgtttgtaatctttaaacggtatcggtaacttttaccgggaaagtaggtcttaggaggacttcatttttccctatcaagcaaaatggatgctaacggctttcacttcaaagttagtgaaggtcatgtatttaattcaaccaatcagatcttagttacacatgcgcaaataattataggtgttttccatttcgtaaatatatcaagttcagatataagtttaaatttagaacaagtaacaaataaagctttttaattgactgtccgaaatatcacaccgtccaaaattccaacagtt
gi|3 : gttttaccactgaatatagtcgtattatatatcgattgcttcattgaacattcctgaacattgtttcgggtgtcctcggaatttttcatgttatacttgcacagctaaactcgagaaacaacgataggtcgtaTCCGAAA---T--TCATAG----C---GAGGTGT-CCGA-AATATCAACAGTTTTCCcatggtgttacaacttcggacag
gi|14 : taaTCCAAAA---T--TCAAAG----C---GAGGTGT-CCGA-AATATCAACAGTTTCCCCaacgctcttcgtctaaccactgaacataggcttatcgtatatcggtagtaacaacgaacattctagattgttttttcgggtttcatcggattttttcctgctatttataccacatatgaacatttaaacgaagtcagatagaaggttataacttcggacgcacggtgtggtaacttcggacagtttttttaattaggttgtttccttttattctgtggttcaatggcatttatgctctcatttttgcacactagaagctgatttattttgtataatagttttgattttgtttgtaatctttaaacggtatcggtaacttttaccgggaaagtaggtcttaggaggacttcatttttccctatcaagcaaaatggatgctaacggctttcacttcaaagttagtgaaggtcatgtatttaattcaaccaatcagatcttagttacacatgcgcaaataattataggtgttttccatttcgtaaatatatcaagttcagatataagtttaaatttagaacaagtaacaaataaagctttttaattgactgtccgaaatatcacaccgtccaaaattccaacagtt
gi|12 : actaTCCAAAA---T--TCACAG----C---GAGGTGT-CCGA-AATATCAACAGTTTCCCCaatgctcttcgtctaaccattgaaca
gi|17 : a-ATCACAC----C---G-----T-CCGA-AATTCCAACAGTTTCaatgctcttcatctaaccatctggagcatagg
gi|4 : ---G-----T-CCAA-AATATCAACAGTTTCCCCattaaaa
gi|18 : gta---G-----T-CCGA-AATATCAACAGTTTCCCC-TATaccagtggcaatgaaattcgacaatgctcctcgtctaaccattgttagaacagtaaacatagacttattacatcaacgatcataccggattgtattctctggattcatccagattttttttctgtttatgtcacaaataaaaatttaaacgaagtcagattgaagggtatacatataactatggacgatggtattgctacttcagacaactgctttataactaaggacactctgaattttgtcatttcctttcattttctgggtcggtaatatttgatggtattttttggcacactagaagttgaattattgtatgtagtagtattttgatctttgaattatatcgttcaattttacagggaaattatgtgtttaagaggacttcattttgtcgatctaacaaattgggtggtggcgacattcattgcaaagttagtcaaggccatgattctat
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TTTTTGGGGTTTTTTTTTGCGCACTAGAATGTGAATAATTGTATGTAGTAGTTTTGATCTTTGAATT
Alignments
lowQualScore : 1111111 11 1 22222222222 1111111 111 1111111 1111111 1111 222222 111 11111 111 11 11111111 33333333 1111 11 1111111111 22222222 11 111 111 11 1111 1 1 111 1 1 11 4
lowQualScore : 8888888 55 77 5 5 5 5 66 5 0 33333333333 66 6666 5 77 0 4 8 1 1111111 000 5 5 2 5 5 3 77 77 7777777 5 8888888 5 5 5 77 5 0 5 3 11 5 1 77 3 8888 8 1 3 8 3 0 111111 8 0 5 55 000 66666 5 2 1 5 4 5 0 9999999 2 000 666 3 6 1 00 7 66 5 1 55 4 4 1 5 5 1 55555555 2 6 22222222 6 4444 11 5555555555 77777777 1 22 11 444 8 1 111 11 1 8 8 7777 0 1 3 22 1 8 1 22 2 0 777 0 0 33 0
lowQualScore : ....... .. .. . . . . .. . . ........... .. .... . .. . . . . ....... ... . . . . . . .. .. ....... . ....... . . . .. . . . . .. . . .. . .... . . . . . . ...... . . . .. ... ..... . . . . . . . ....... . ... ... . . . .. . .. . . .. . . . . . . ........ . . ........ . .... .. .......... ........ . .. .. ... . . ... .. . . . .... . . . .. . . . .. . . ... . . .. .
lowQualScore : 6666666 88 99 7 7 7 0 99 0 0 88888888888 99 7777 7 99 3 7 7 7 6666666 999 0 0 5 0 0 0 99 99 9999999 7 1111111 7 7 7 99 7 7 7 0 11 7 7 99 8 2222 0 0 2 0 8 8 444444 0 6 6 88 777 44444 7 1 3 7 4 7 1 0000000 2 888 888 3 7 7 33 5 77 7 0 99 3 3 0 7 7 0 33333333 5 7 88888888 7 2222 00 0000000000 44444444 4 44 00 000 0 4 888 00 0 0 0 0000 8 4 8 88 4 0 0 00 0 0 555 0 0 00 0
consensus : NGTAGGGGAAACTGTTGATA-------TTTCGGACACC--TCGCTA--TGAATTTC-GGAA-ATGCTC-TTC-GTCTAA--CCA-CT-G-----------AACATA--GGCTTAT-CG-TATA-TCG--GTAGTAANAACGAACATTCT---AG--ATTGT--GTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACT-ACA-TATGAACATTTAAA--CG--AAGTCAGATAGAAGG---T---TATA-ACT-T-----CGG-AC-GG-TGGT--GTTG-CAACTT-CGGACGCATGGTG-TTGTAACTTCGGACA--GTTTCT--A-AA-TTNGGTTGTTTCCTT-TTATTCTGTGGTTCG-----ATGAC-ATTTTATGCTCTCATTTTTG-GCACAC----TAGAAGC-TGANTTATTTTAT-GTAGTAGT-TTTGATTTTGTTTGTAATCTTTAAATTA--TATC-GGTAACTTTTAC-CGGGAAAGTAGGT-CTCNGGAGGACTTCATTTTGCCN-ATCAAA-CAAANTGG-ATGNTGGCGACGTT-CAC-TTCAAAGTT----A---GTGAA-GGTCATGT---T--AAT-T----CAACC--AATCAG-ATC-TTAGTTACACG-----C--GCGCANATAATTA--GGTGTTTT---CCAT-TTCGTAAATATATCGAG-T-TCAGATAT--AAGTTTAAATTTAGAA-CAA-GTAAC----AAAAGAAACGCGAGATATAGA-GCNTTTNNATTGACT-GTCCGAAA---TATCACACCGT-CCGA-AATTCCAACAGTTTCCCCATAT
Reference ( family-293 ) : NGTAGGGGAAACTGTTGATA-------TTTCGGACACC--TCGCTA--TGAATTTC-GGAA-ATGCTC-TTC-GTCTAA--CCA-CT-G-----------AACATA--GGCTTAT-CG-TATA-TCG--GTAGTAAAAACGAACATTCT---AG--ATTGT--GTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACT-ACA-TATGAACATTTAAA--CG--AAGTCAGATAGAAGG---T---TATA-ACT-T-----CGG-AC-GG-TGGT--GTTG-CAACTT-CGGACGCATGGTG-TTGTAACTTCGGACA--GTTTCT--A-AA-TTNGGTTGTTTCCTT-TTATTCTGTGGTTCG-----ATGAC-ATTTTATGCTCTCGTTTTTG-GCACAC----TAGAAGC-TGAATTATTTTAT-ATAATAGT-TTTGATTTTGTTTGTAATCTTTGAATTA--TATC-GNTAANTTTTAC-CGGGAAAGTAGGT-CTCNGGAGGACTTCATTTTGCCN-ATCAAA-CAAANTGG-ATGGTGGCGACNTT-CAC-TNCAAAGTT----A---GTGAA-GGTCATGT---T--AAT-T----CAACC--AATCAG-ATC-TTANTTACACG-----C--GCGCANATAATTA--GGTGTTTT---CCAT-TTCGTAAATATATCGAG-T-TCAGATAC--AAGTTTAAATNTAGAA-CAA-GTAAC----AAAAGAAACGCNAAATATAGA-GCNTTTNNATCGACT-GTCCGAAA---TATCACACCGT-CCGA-AATNTCAACAGTTTCCCC-TAT
gi|1 : GTAGGGGAGACTGTTGATA-------TTTTGGACACC--TCGCTA--TGAATTTC-GGAA-ATGCTC-TTC-GTCTAA--CCA-TT-G-----------AACATA--GGCTTAT-CG-TATA-TCG--GTAGTAAAAACGAACATTCT---AG--ATTGT--GTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACT-ATA-TATGAACATTTAAA--CG--AAGTCAGATAGAAGG---T---TATA-ACT-T-----CGG-AC-GG-TGGT--GTTG-CAACTT-CGGACGCATGGTG-TTGTAACTTTGGACA--GTTTCT--A-AA-TTCGGTTGTTTCCTT-TTATTCTGTAGTTCA-----ATGAC-ATGCTATGCTCTCATTATTG-G-ACAC----TAGATGC-TGATTTATATTAA-ATAATAGT-TTTGGTTTTGTTTGTAATCTTTAAATTA--TATT-GGTAACTTTTAC-CGGAAAAGTAGGT-CTCTGAAGGACTTCGTTTTGCCT-GTCAAA-CAAAATGG-ATGCTGGCGACGTT-CAC-TTCAAAGTT----AAGGGTGAA-GGTCATAT---T--AAT-T----CAACC--AATCAG-ATC-TTAGTTACACA-----T--TCACATATAATTA--GGTGTTTT---CCAT-TTCGTAAATATATCAAG-T-TCAGATAT--AAGTTTAAATTTAGAA-CAA-GTAAC----AAAAGAAATGCGAGATATAAA-GCGTTTAAATTGACT-GTCCGAAA---TATCACACCGT-CCGA-AATTCCAACAGTTTCCCCATAT
gi|10 : tCTTCATTTTGCCG-ATCAAA-CAAATTGG-ATGGAGGAGACATT-CAC-TGCAAAGTT----A---gtattaa
gi|11 : aacattccagaaaaatttagtgtactacatgtaggtaanTAGGGGAAACTGTTGATATCGTTGTTTCCGGA-ACCT-TCGCTATTTGAATTTTAGGAATATGCTCTTTC-GTCTAATTTCA-TTGG-----------AACA
gi|12 : AGGGGAAACTGTTGATA-------TTTCGGACACC--TCGCTG--TGAATTTT-GGAA-ATGCTC-TTC-ATCTAA--CCATCTGG-----------AGCATA--GG
gi|13 : TATAT---G-T-TCAGATGTTTAAGTTTAAATTTAGAA-CAA-GTAATAACAAAAAGAAACGCTAAATATCGA-G
gi|14 : TAGGGGAAACTGTTGATA-------TTTCGGACACC--TCGCTT--TGAATTTT-GGAA-ATGCTC-TTC-GTCTAA--CCA-TT-G-----------AACAggccgttc
gi|15 : acTTTTTT-GCGCAC----TAGAATG-TGAATAATTGTAT-GTAGTAGT-TTTGATCTT
gi|16 : tttttggggtttGT-TTCATT-GGATTTTTTCCTGCTATTTATATT-ACA-TATtgaatt
gi|17 : ATCACACCGT-CCGA-AATTCCAACAGTTTC
gi|18 : TAGGGGAAACTGTTGATA-------TTTCGGACAattaaaa
gi|2 : caaa--GGCTTATGCGGTATA-TCG--GTAGTAAAA-CGAACATTCT---AGTAATTGTTGGTTTTTCGGTGTTCATC-GTATTTGTTCCTGCTATTTATACTCATAGTATGAG-ATTTAAA--TGTAAGGTCAGATAGAAGG---G---TTTAGACTGT-----CGGGAC-GGGTGGT--GTTGGCAACTTTCGGACGCATGGTG-TTGTAACTTCGGACAATGTTTTTTAA-AA-TTTTGTTGTTTCCTTATTA-TCTGTAGTT-GATTATATGAC-ATGCTATGCTC-CATTTTTGTGGACA-----TAGAAGCTTGATTTATTTTACAATAATAGT-TTTCGTTTTGTTTGTAATTCTTTAATTAAGTATCGGGTAACTTTTACGCGGAAAGGTAGGT--TATGAAGGACTTCGTTTTG-GT-GTCAAAGCAAAATGGAATGCTGG-GACGTT-CACGTTCAAAGTTTAAGG---GTGAAGGGTCATAT---TGAGATGT----CAACCTGAGTCAGTATCGTTGTTTAAGCGACAGTC--GCACTGATAGTTA--GGTGCTTTATCTCATGTTTGTGAATATATCGAGTT-TTAGATAC--AAGTTTATGTGTAGAAGCAAGGTAAC----AAAAGAAGTGCGAGATATAGACGCGTTAATATCGACTGGTCCGAAATATTATCAGACCGTACCGATAAT-TCAACAGTT
gi|3 : TAAGGAAAACTGTTGATA-------TTTCGGACACC--TCGCTA--TGAATTTC-GGAA-ACGCTC-TTC-GTCTAA--CCA-CT-G-----------AACATA--GGCTTAT-CG-TATA-TCG--GTAGTAACAACGAACATTCT---AG--ATTGT--TTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACC-ACA-TATGAACATTTAAA--CG--AAGTCAGATAGAAGG---T---TATA-ACT-T-----CGG-AC-G--------------------------CACGGTG-TGGTAACTTCGGACA--GTTTTT--TTAA-TTAGGTTGTTTCCTT-TTATTCTGTGGTTCA-----ATGGC-ATTT-ATGCTCTCATTTTTG--CACAC----TAGAAGC-TGATTTATTTTGT-ATAATAGT-TTTGATTTTGTTTGTAATCTTTAAACGG--TATC-GGTAACTTTTAC-CGGGAAAGTAGGT-CTTAGGAGGACTTCATTTTTCCCTATCAAG-CAAAATGG-ATGCTAACGGCTTT-CAC-TTCAAAGTT----A---GTGAA-GGTCATGTATTT--AAT-T----CAACC--AATCAG-ATC-TTAGTTACACA-----T--GCGCAAATAATTATAGGTGTTTT---CCAT-TTCGTAAATATATCAAG-T-TCAGATAT--AAGTTTAAATTTAGAA-CAA-GTAAC----AAA--------------TAAA-GCTTTTTAATTGACT-GTCCGAAA---TATCACACCGT-CCAA-AATTCCAACAGTTgtcgcgtagtctt
gi|4 : GTAGGGGAAACTGTTGATA-------TTTTGGACACCAGTGGCAA--TGAAATTC-GACA-ATGCTC-CTC-GTCTAA--CCA-TT-GTTAGAACAGTAAACATA--GACTTAT----TACA-TC-----------AACGATCATACC---GG--ATTGT--ATTCTCTGGA-TTCATCCAGATTTTTT--TTCTGTTTATGTC-ACA-AATAAAAATTTAAA--CG--AAGTCAGATTGAAGGGTATACATATA-ACT-A-----TGG-AC-GA-TGGT--ATTG-CTACTT-CAGACAACTGCT--TTATAACTAAGGACA----CTCT--G-AA-TTTTGTCATTTCCTT-TCATTTTCTGGGTCG-----GTAAT-ATTTGATGGTAT--TTTTTG-GCACAC----TAGAAGT-TGAATTATTGTAT-GTAGTAGT-----ATTTTG------ATCTTTGAATTA--TATC-GTTCAATTTTAC-AGGGAAATTATGTGTTTAAGAGGACTTCATTTTGTCG-ATCTAA-CAAATTGG-GTGGTGGCGACATT-CAT-TGCAAAGTT----A---GTCAA-GGCCATG--------AT-T----C
gi|5 : TA--TGAATTTC-GGA---TACTC-TTAAGTCTA---CCA-CT-G-----------AACATACTGGCTTAT-CG-TATAGTCGTCACAGTAACA-CGA-CATTCT----G--ATTGT--GTTTTCGCGG-TTCATT-GGATTTTTCC--GCTATTCATATT-ACA-TATGAATCTTTAAAACCG--AAGTCAGATAGAAGG---T---TATA-ACT-TTAATTCGG-AT-GG-TGGT--GTTG-CAA-TT-CG-ACACATGGTGGTTGTAACT--AGACA--GT--CT--A-AAATTAGGTT-TTTCCTT-T-ATTCTGTGGTTCC-----ATGACCATTTTATGCTCTCATTTTTG--CACA-----TA-AAGC-TGAATTATTTAAT-ATA-TAGCCTTTGATTTTTTTT-TA-TCTTTAGATT-----------------TAC-CAGGTA-GTAAGT-CTC-GGAGGAGCTTATTTTGCCT-ATCAAA-TAAAATGG--------CGACCTTTCAC-TTCAA-GTT----A---GT-AA-GGTCATGTATTT--AAT-T----CAACC--AATCAG----------TACATG-----C--GCCCTAATAATTA--GGTGTTTT---CCAT-TTCGTtat
gi|6 : -GTTTTA--CCA-CT-G-----------AATATA--GTCGTAT-TA-TATA-TCG--ATTGCTTCATTGAACATTCCTGAAC--ATTGT-----TTCGGGT-GTCCTC-GGAATTTTTCATG----TTATACT-------TGCACAGCTAAA--C------TCG---AGAA----------ACA-AC----------G-ATAGG-TCGTATGTTG-TAACTT-CGAACA-GTGGTG-TTATTATTTCGGACA--
gi|7 : --GGCTTAT-CG-TATA-TCG--GTAGAAAAAACGAACATTCT---AG--ATTGT--GTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACT-ATA-TATGAACATTTAAA--CG--AAGTCAGATAGAAGG---T---TATA-ACT-T-----CGG-AC-GG-TGGT--GTTG-CAGCTT-CGGACGCATGGTG-TTGTAACTTCGGATA--GTcatggtgttacaacttcggacag
gi|8 : TGAA-GGTCAT-C---T--ATT-TGAGGCGACC--AATCGG-AGC-TTA---ACACG-----CATGCGCACTTAAATC--GGTGTTTT---CCAA-TTTGTAAAAATATCGAG-GATCATAAAC--AACTTTAAATATAGAA-CAG-ACAAC----AAAAGAAA-GTAAATTATATG-GCTTTTTTATTGACT-GTCCGAAA---TAc
gi|9 : TGTTTTTGTTTTTG-GCACACGTAGTAGAAGT-TGAATTATTGTAT-GTAGTAGT-TTTGAT------------CTTTGAATTA--CATC-ATTAAATTTTAC-AGGGAAATTAGGA-TTCGGGAGAACTTCATTTTGCCG-ATCAAA-AAAATTGG-ATGGTGGAGACATT-CAC-TGCAAAGTT----A---g
Alignments
lowQualScore : 1111111 11 1 22222222222 1111111 111 1111111 1111 1111111 11111 2222 222222 11111 1111111 11 11111111 33333333333 1111 11 2222222222222222 11 11 111 111 11 1111 1 1 111 1 1
lowQualScore : 8888888 55 77 5 5 5 5 66 5 0 33333333333 66 6666 5 77 0 8 1111111 000 5 5 5 5 3 2222222 77 77 2222 4444444 5 44444 5 5 5 5 1 3 5 3 0 5 1 8888 6666 1 3 0 8 0 111111 8 0 5 1 66 0 66666 5 1 1 5 4 5 0 2222222 0 1 99 6 2 2 6 00 7 66 5 6 5 1 4 5 4 5 1 55555555 2 6 22222222222 6 4444 11 6666666666666666 1 11 1 22 11 444 8 1 111 11 1 8 8 7777 0 1 3 22 1 8 1 22 0 777 0 0 2
lowQualScore : ....... .. .. . . . . .. . . ........... .. .... . .. . . ....... ... . . . . . ....... .. .. .... ....... . ..... . . . . . . . . . . . .... .... . . . . . ...... . . . . .. . ..... . . . . . . . ....... . . .. . . . . .. . .. . . . . . . . . . ........ . . ........... . .... .. ................ . .. . .. .. ... . . ... .. . . . .... . . . .. . . . .. . ... . . .
lowQualScore : 6666666 88 99 7 7 7 0 99 0 0 88888888888 99 7777 7 99 3 6 6666666 999 0 0 0 0 0 3333333 99 99 1111 4444444 7 33333 7 7 7 7 9 0 7 0 4 7 7 2222 2222 0 2 8 0 8 444444 0 6 6 0 44 7 44444 7 0 3 7 0 7 1 3333333 3 7 22 7 5 5 7 33 5 77 7 6 7 0 3 7 0 7 3 33333333 5 7 88888888888 7 2222 00 2222222222222222 4 00 4 44 00 000 0 4 888 00 0 0 0 0000 8 4 2 44 4 0 0 00 0 555 0 0 5
consensus : NGTAGGGGAAACTGTTGATA-------TTTCGGACACC--TCGCTA--TGAATTTC-GGAA-ATGCTC-TTC-GTCTAA--CCA-CT-G-----------AACATA--GGCTTAT-CG-TATA-TCG--GTAGTAACAACGAACATTCT---AG--ATTGT--GTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACT-ACA-TATGAACATTTAAA--C----G--AAGTCA--GATAGA----AGG---T---TATA-AC-----T-TCGG-ACGG-TGGTGTTG-CAACTT-CGGACGCATGGT-GTTGTAACTTCGGACA--GTTTCT--A-AATTNGGTTGTTTCCTT-TTATTCTGTGGTTCG-----ATGA-CATTTTATGCTCTCATTTTTG-GCACAC----TAGAAGC-TGANTTATTTTAT-GTAGTAG-TTTTGATTTTGTTTGTAATCTTTAAATTA--TATC-GGTAACTTTTAC-CGGGAAAGTAGGT-CTCNGGAGGACTTCATTTTGCCN-ATCAAA-CAAANTGG-ATGNTGGCGA-CGTTCAC-TTCAAAGTT----A---GTGAA-GGTCATG---T---T--AAT-T----CAACC--AATCAG-ATCTTAGTT------ACACGC--GCGCANATAATTA--GGTGTTTT---CCAT-TTCGTAAATATATCGAG-T-TCAGATAT--AAGTTTAAATTTAGAA-CAA-GTAAC----AAAAGAAACGCGAGATATAGA-GCNTTTNNATTGACT-GTCCGAAA---TATCACACCGT-CCGA-AATTCCAACAGTTTCCCCATAT
Reference ( family-293 ) : NGTAGGGGAAACTGTTGATA-------TTTCGGACACC--TCGCTA--TGAATTTC-GGAA-ATGCTC-TTC-GTCTAA--CCA-CT-G-----------AACATA--GGCTTAT-CG-TATA-TCG--GTAGTAANAACGAACATTCT---AG--ATTGT--GTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACT-ACA-TATGAACATTTAAA--C----G--AAGTCA--GATAGA----AGG---T---TATA-AC-----T-TCGG-ACGG-TGGTGTTG-CAACTT-CGGACGCATGGT-GTTGTAACTTCGGACA--GTTTCT--A-AATTNGGTTGTTTCCTT-TTATTCTGTGGTTCG-----ATGA-CATTTTATGCTCTCATTTTTG-GCACAC----TAGAAGC-TGANTTATTTTAT-GTAGTAG-TTTTGATTTTGTTTGTAATCTTTAAATTA--TATC-GGTAACTTTTAC-CGGGAAAGTAGGT-CTCNGGAGGACTTCATTTTGCCN-ATCAAA-CAAANTGG-ATGNTGGCGA-CGTTCAC-TTCAAAGTT----A---GTGAA-GGTCATG---T---T--AAT-T----CAACC--AATCAG-ATCTTAGTT------ACACGC--GCGCANATAATTA--GGTGTTTT---CCAT-TTCGTAAATATATCGAG-T-TCAGATAT--AAGTTTAAATTTAGAA-CAA-GTAAC----AAAAGAAACGCGAGATATAGA-GCNTTTNNATTGACT-GTCCGAAA---TATCACACCGT-CCGA-AATTCCAACAGTTTCCCCATAT
gi|1 : GTAGGGGAGACTGTTGATA-------TTTTGGACACC--TCGCTA--TGAATTTC-GGAA-ATGCTC-TTC-GTCTAA--CCA-TT-G-----------AACATA--GGCTTAT-CG-TATA-TCG--GTAGTAAAAACGAACATTCT---AG--ATTGT--GTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACT-ATA-TATGAACATTTAAA--C----G--AAGTCA--GATAGA----AGG---T---TATA-AC-----T-TCGG-ACGG-TGGTGTTG-CAACTT-CGGACGCATGGT-GTTGTAACTTTGGACA--GTTTCT--A-AATTCGGTTGTTTCCTT-TTATTCTGTAGTTCA-----ATGA-CATGCTATGCTCTCATTATTG-G-ACAC----TAGATGC-TGATTTATATTAA-ATAATAG-TTTTGGTTTTGTTTGTAATCTTTAAATTA--TATT-GGTAACTTTTAC-CGGAAAAGTAGGT-CTCTGAAGGACTTCGTTTTGCCT-GTCAAA-CAAAATGG-ATGCTGGCGA-CGTTCAC-TTCAAAGTT----AAGGGTGAA-GGTCATA---T---T--AAT-T----CAACC--AATCAG-ATCTTAGTT------ACACAT--TCACATATAATTA--GGTGTTTT---CCAT-TTCGTAAATATATCAAG-T-TCAGATAT--AAGTTTAAATTTAGAA-CAA-GTAAC----AAAAGAAATGCGAGATATAAA-GCGTTTAAATTGACT-GTCCGAAA---TATCACACCGT-CCGA-AATTCCAACAGTTTCCCCATAT
gi|10 : tCTTCATTTTGCCG-ATCAAA-CAAATTGG-ATGGAGGAGA-CATTCAC-TGCAAAGTT----A---gtattaa
gi|11 : aacattccagaaaaatttagtgtactacatgtaggtaanTAGGGGAAACTGTTGATATCGTTGTTTCCGGA-ACCT-TCGCTATTTGAATTTTAGGAATATGCTCTTTC-GTCTAATTTCA-TTGG-----------AACA
gi|12 : AGGGGAAACTGTTGATA-------TTTCGGACACC--TCGCTG--TGAATTTT-GGAA-ATGCTC-TTC-ATCTAA--CCATCTGG-----------AGCATA--GG
gi|13 : TATAT---G-T-TCAGATGTTTAAGTTTAAATTTAGAA-CAA-GTAATAACAAAAAGAAACGCTAAATATCGA-G
gi|14 : TAGGGGAAACTGTTGATA-------TTTCGGACACC--TCGCTT--TGAATTTT-GGAA-ATGCTC-TTC-GTCTAA--CCA-TT-G-----------AACAggccgttc
gi|15 : acTTTTTT-GCGCAC----TAGAATG-TGAATAATTGTAT-GTAGTAG-TTTTGATCTT
gi|16 : tttttggggtttGT-TTCATT-GGATTTTTTCCTGCTATTTATATT-ACA-TATtgaatt
gi|17 : ATCACACCGT-CCGA-AATTCCAACAGTTTC
gi|18 : TAGGGGAAACTGTTGATA-------TTTCGGACAattaaaa
gi|2 : caaa--GGCTTATGCGGTATA-TCG--GTAGTAA-AACGAACATTCT---AGTAATTGTTGGTTTTTCGGTGTTCATC-GTATTTGTTCCTGCTATTTATACTCATAGTATGAG-ATTTAAA--T----GTAAGGTCA--GATAGA----AGG---G---TTTAGAC-----TGTCGGGACGGGTGGTGTTGGCAACTTTCGGACGCATGGT-GTTGTAACTTCGGACAATGTTTTTTAA-AATTTTGTTGTTTCCTTATTA-TCTGTAGTT-GATTATATGA-CATGCTATGCTC-CATTTTTGTGGACA-----TAGAAGCTTGATTTATTTTACAATAATAG-TTTTCGTTTTGTTTGTAATTCTTTAATTAAGTATCGGGTAACTTTTACGCGGAAAGGTAGGT--TATGAAGGACTTCGTTTTG-GT-GTCAAAGCAAAATGGAATGCTGG-GA-CGTTCACGTTCAAAGTTTAAGG---GTGAAGGGTCATA---T---TGAGATGT----CAACCTGAGTCAGTATCGTTGTTTAAGCGACAGTC--GCACTGATAGTTA--GGTGCTTTATCTCATGTTTGTGAATATATCGAGTT-TTAGATAC--AAGTTTATGTGTAGAAGCAAGGTAAC----AAAAGAAGTGCGAGATATAGACGCGTTAATATCGACTGGTCCGAAATATTATCAGACCGTACCGATAATT-CAACAGTT
gi|3 : TAAGGAAAACTGTTGATA-------TTTCGGACACC--TCGCTA--TGAATTTC-GGAA-ACGCTC-TTC-GTCTAA--CCA-CT-G-----------AACATA--GGCTTAT-CG-TATA-TCG--GTAGTAACAACGAACATTCT---AG--ATTGT--TTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACC-ACA-TATGAACATTTAAA--C----G--AAGTCA--GATAGA----AGG---T---TATA-AC-----T-TCGG-ACG------------------------CACGGT-GTGGTAACTTCGGACA--GTTTTT--TTAATTAGGTTGTTTCCTT-TTATTCTGTGGTTCA-----ATGG-CATTT-ATGCTCTCATTTTTG--CACAC----TAGAAGC-TGATTTATTTTGT-ATAATAG-TTTTGATTTTGTTTGTAATCTTTAAACGG--TATC-GGTAACTTTTAC-CGGGAAAGTAGGT-CTTAGGAGGACTTCATTTTTCCCTATCAAG-CAAAATGG-ATGCTAACGG-CTTTCAC-TTCAAAGTT----A---GTGAA-GGTCATG---TATTT--AAT-T----CAACC--AATCAG-ATCTTAGTT------ACACAT--GCGCAAATAATTATAGGTGTTTT---CCAT-TTCGTAAATATATCAAG-T-TCAGATAT--AAGTTTAAATTTAGAA-CAA-GTAAC----AAA--------------TAAA-GCTTTTTAATTGACT-GTCCGAAA---TATCACACCGT-CCAA-AATTCCAACAGTTgtcgcgtagtctt
gi|4 : GTAGGGGAAACTGTTGATA-------TTTTGGACACCAGTGGCAA--TGAAATTC-GACA-ATGCTC-CTC-GTCTAA--CCA-TT-GTTAGAACAGTAAACATA--GACTTAT----TACA-TC-----------AACGATCATACC---GG--ATTGT--ATTCTCTGGA-TTCATCCAGATTTTTT--TTCTGTTTATGTC-ACA-AATAAAAATTTAAA--C----G--AAGTCA--GATTGA----AGGGTATACATATA-AC-----T-ATGG-ACGA-TGGTATTG-CTACTT-CAGACAACTGCT--TTATAACTAAGGACA----CTCT--G-AATTTTGTCATTTCCTT-TCATTTTCTGGGTCG-----GTAA-TATTTGATGGTAT--TTTTTG-GCACAC----TAGAAGT-TGAATTATTGTAT-GTAGTAG-T----ATTTTG------ATCTTTGAATTA--TATC-GTTCAATTTTAC-AGGGAAATTATGTGTTTAAGAGGACTTCATTTTGTCG-ATCTAA-CAAATTGG-GTGGTGGCGA-CATTCAT-TGCAAAGTT----A---GTCAA-GGCCATG-----------AT-T----C
gi|5 : TA--TGAATTTC-GGA---TACTC-TTAAGTCTA---CCA-CT-G-----------AACATACTGGCTTAT-CG-TATAGTCGTCACAGTAAC-ACG-ACATTCT----G--ATTGT--GTTTTCGCGG-TTCATT-GGATTTTT--CCGCTATTCATATT-ACA-TATGAATCTTTAAAACC----G--AAGTCA--GATAGA----AGG---T---TATA-ACTTTAAT-TCGG-ATGG-TGGTGTTG-CAA-TT-C-GACACATGGTGGTTGTAACT--AGACA--G--TCTA-A-AATTAGGTT-TTTCC-T-TTATTCTGTGGTTCC-----ATGACCATTTTATGCTCTCATTTTT--GCACA-----TA-AAGC-TGAATTATTTAAT-ATA-TAGCCTTTGATTTT-TTTTT-ATCTTTAGA-----------------TTTAC-CAGG-TAGTAAGT-CTC-GGAGGAGCTTATTTTGCCT-ATCAAA-TAAA--------ATGGCGACCTTTCAC-TTC-AAGTT----A---GT-AA-GGTCATGTATT---T--AAT-T----CAACC--AATCAG---------T------ACATGC--GCCCTAATAATTA--GGTGTTTT---CCAT-TTCGTtat
gi|6 : -GTTTTA--CCA-CT-G-----------AATATA--GTCGTAT-TA-TATA-TCG--ATTGCTTCATTGAACATTCCTGAAC--ATTGT-----TTCGGGT-GTCCTC-GGAATTTTTCATG----TTATACT-------TGCACAGCTAAA--CTCGAG--AAA-CAACGATAGGTCGTATG---T---TGTA-AC-----T-TCGA-ACAG-TGGTGTTA-TTATTT-CGGACACATGGT-GTTACAACTTCGGACA--G
gi|7 : --GGCTTAT-CG-TATA-TCG--GTAGAAAAAACGAACATTCT---AG--ATTGT--GTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACT-ATA-TATGAACATTTAAA--C----G--AAGTCA--GATAGA----AGG---T---TATA-AC-----T-TCGG-ACGG-TGGTGTTG-CAGCTT-CGGACGCATGGT-GTTGTAACTTCGGATA--GT
gi|8 : TGAA-GGTCAT----C---T--ATT-TGAGGCGACC--AATCGG-AGCTTA---------ACACGCATGCGCACTTAAATC--GGTGTTTT---CCAA-TTTGTAAAAATATCGAG-GATCATAAAC--AACTTTAAATATAGAA-CAG-ACAAC----AAAAGAAA-GTAAATTATATG-GCTTTTTTATTGACT-GTCCGAAA---TAc
gi|9 : TGTTTTTGTTTTTG-GCACACGTAGTAGAAGT-TGAATTATTGTAT-GTAGTAG-TTTTGAT------------CTTTGAATTA--CATC-ATTAAATTTTAC-AGGGAAATTAGGA-TTCGGGAGAACTTCATTTTGCCG-ATCAAA-AAAATTGG-ATGGTGGAGA-CATTCAC-TGCAAAGTT----A---g
Alignments
lowQualScore : 1111111 11 1 22222222222 1111111 111 1111111 1111 1111111 11111 2222 222222 11111 1111111 11 11111111 33333333333 1111 11 2222222222222222 11 11 111 111 11 1111 1 1 111 1 1
lowQualScore : 8888888 55 77 5 5 5 5 66 5 0 33333333333 66 6666 5 77 0 7 1111111 000 5 5 5 5 3 2222222 77 77 2222 4444444 5 44444 5 5 5 5 1 3 5 3 0 5 1 8888 6666 1 3 0 8 0 111111 8 0 5 1 66 0 66666 5 1 1 5 4 5 0 2222222 0 1 99 6 2 2 6 00 7 66 5 6 5 1 4 5 4 5 1 55555555 2 6 22222222222 6 4444 11 6666666666666666 1 11 1 22 11 444 8 1 111 11 1 8 8 7777 0 1 3 22 1 8 1 22 0 777 0 0 2
lowQualScore : ....... .. .. . . . . .. . . ........... .. .... . .. . . ....... ... . . . . . ....... .. .. .... ....... . ..... . . . . . . . . . . . .... .... . . . . . ...... . . . . .. . ..... . . . . . . . ....... . . .. . . . . .. . .. . . . . . . . . . ........ . . ........... . .... .. ................ . .. . .. .. ... . . ... .. . . . .... . . . .. . . . .. . ... . . .
lowQualScore : 6666666 88 99 7 7 7 0 99 0 0 88888888888 99 7777 7 99 3 9 6666666 999 0 0 0 0 0 3333333 99 99 1111 4444444 7 33333 7 7 7 7 9 0 7 0 4 7 7 2222 2222 0 2 8 0 8 444444 0 6 6 0 44 7 44444 7 0 3 7 0 7 1 3333333 3 7 22 7 5 5 7 33 5 77 7 6 7 0 3 7 0 7 3 33333333 5 7 88888888888 7 2222 00 2222222222222222 4 00 4 44 00 000 0 4 888 00 0 0 0 0000 8 4 2 44 4 0 0 00 0 555 0 0 5
consensus : NGTAGGGGAAACTGTTGATA-------TTTCGGACACC--TCGCTA--TGAATTTC-GGAA-ATGCTC-TTC-GTCTAA--CCA-CT-G-----------AACATA--GGCTTAT-CG-TATA-TCG--GTAGTAACAACGAACATTCT---AG--ATTGT--GTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACT-ACA-TATGAACATTTAAA--C----G--AAGTCA--GATAGA----AGG---T---TATA-AC-----T-TCGG-ACGG-TGGTGTTG-CAACTT-CGGACGCATGGT-GTTGTAACTTCGGACA--GTTTCT--A-AATTNGGTTGTTTCCTT-TTATTCTGTGGTTCG-----ATGA-CATTTTATGCTCTCATTTTTG-GCACAC----TAGAAGC-TGANTTATTTTAT-GTAGTAG-TTTTGATTTTGTTTGTAATCTTTAAATTA--TATC-GGTAACTTTTAC-CGGGAAAGTAGGT-CTCNGGAGGACTTCATTTTGCCN-ATCAAA-CAAANTGG-ATGNTGGCGA-CGTTCAC-TTCAAAGTT----A---GTGAA-GGTCATG---T---T--AAT-T----CAACC--AATCAG-ATCTTAGTT------ACACGC--GCGCANATAATTA--GGTGTTTT---CCAT-TTCGTAAATATATCGAG-T-TCAGATAT--AAGTTTAAATTTAGAA-CAA-GTAAC----AAAAGAAACGCGAGATATAGA-GCNTTTNNATTGACT-GTCCGAAA---TATCACACCGT-CCGA-AATTCCAACAGTTTCCCCATAT
Reference ( family-293 ) : NGTAGGGGAAACTGTTGATA-------TTTCGGACACC--TCGCTA--TGAATTTC-GGAA-ATGCTC-TTC-GTCTAA--CCA-CT-G-----------AACATA--GGCTTAT-CG-TATA-TCG--GTAGTAACAACGAACATTCT---AG--ATTGT--GTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACT-ACA-TATGAACATTTAAA--C----G--AAGTCA--GATAGA----AGG---T---TATA-AC-----T-TCGG-ACGG-TGGTGTTG-CAACTT-CGGACGCATGGT-GTTGTAACTTCGGACA--GTTTCT--A-AATTNGGTTGTTTCCTT-TTATTCTGTGGTTCG-----ATGA-CATTTTATGCTCTCATTTTTG-GCACAC----TAGAAGC-TGANTTATTTTAT-GTAGTAG-TTTTGATTTTGTTTGTAATCTTTAAATTA--TATC-GGTAACTTTTAC-CGGGAAAGTAGGT-CTCNGGAGGACTTCATTTTGCCN-ATCAAA-CAAANTGG-ATGNTGGCGA-CGTTCAC-TTCAAAGTT----A---GTGAA-GGTCATG---T---T--AAT-T----CAACC--AATCAG-ATCTTAGTT------ACACGC--GCGCANATAATTA--GGTGTTTT---CCAT-TTCGTAAATATATCGAG-T-TCAGATAT--AAGTTTAAATTTAGAA-CAA-GTAAC----AAAAGAAACGCGAGATATAGA-GCNTTTNNATTGACT-GTCCGAAA---TATCACACCGT-CCGA-AATTCCAACAGTTTCCCCATAT
gi|1 : GTAGGGGAGACTGTTGATA-------TTTTGGACACC--TCGCTA--TGAATTTC-GGAA-ATGCTC-TTC-GTCTAA--CCA-TT-G-----------AACATA--GGCTTAT-CG-TATA-TCG--GTAGTAAAAACGAACATTCT---AG--ATTGT--GTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACT-ATA-TATGAACATTTAAA--C----G--AAGTCA--GATAGA----AGG---T---TATA-AC-----T-TCGG-ACGG-TGGTGTTG-CAACTT-CGGACGCATGGT-GTTGTAACTTTGGACA--GTTTCT--A-AATTCGGTTGTTTCCTT-TTATTCTGTAGTTCA-----ATGA-CATGCTATGCTCTCATTATTG-G-ACAC----TAGATGC-TGATTTATATTAA-ATAATAG-TTTTGGTTTTGTTTGTAATCTTTAAATTA--TATT-GGTAACTTTTAC-CGGAAAAGTAGGT-CTCTGAAGGACTTCGTTTTGCCT-GTCAAA-CAAAATGG-ATGCTGGCGA-CGTTCAC-TTCAAAGTT----AAGGGTGAA-GGTCATA---T---T--AAT-T----CAACC--AATCAG-ATCTTAGTT------ACACAT--TCACATATAATTA--GGTGTTTT---CCAT-TTCGTAAATATATCAAG-T-TCAGATAT--AAGTTTAAATTTAGAA-CAA-GTAAC----AAAAGAAATGCGAGATATAAA-GCGTTTAAATTGACT-GTCCGAAA---TATCACACCGT-CCGA-AATTCCAACAGTTTCCCCATAT
gi|10 : tCTTCATTTTGCCG-ATCAAA-CAAATTGG-ATGGAGGAGA-CATTCAC-TGCAAAGTT----A---gtattaa
gi|11 : aacattccagaaaaatttagtgtactacatgtaggtaanTAGGGGAAACTGTTGATATCGTTGTTTCCGGA-ACCT-TCGCTATTTGAATTTTAGGAATATGCTCTTTC-GTCTAATTTCA-TTGG-----------AACA
gi|12 : AGGGGAAACTGTTGATA-------TTTCGGACACC--TCGCTG--TGAATTTT-GGAA-ATGCTC-TTC-ATCTAA--CCATCTGG-----------AGCATA--GG
gi|13 : TATAT---G-T-TCAGATGTTTAAGTTTAAATTTAGAA-CAA-GTAATAACAAAAAGAAACGCTAAATATCGA-G
gi|14 : TAGGGGAAACTGTTGATA-------TTTCGGACACC--TCGCTT--TGAATTTT-GGAA-ATGCTC-TTC-GTCTAA--CCA-TT-G-----------AACAggccgttc
gi|15 : acTTTTTT-GCGCAC----TAGAATG-TGAATAATTGTAT-GTAGTAG-TTTTGATCTT
gi|16 : tttttggggtttGT-TTCATT-GGATTTTTTCCTGCTATTTATATT-ACA-TATtgaatt
gi|17 : ATCACACCGT-CCGA-AATTCCAACAGTTTC
gi|18 : TAGGGGAAACTGTTGATA-------TTTCGGACAattaaaa
gi|2 : caaa--GGCTTATGCGGTATA-TCG--GTAGTAA-AACGAACATTCT---AGTAATTGTTGGTTTTTCGGTGTTCATC-GTATTTGTTCCTGCTATTTATACTCATAGTATGAG-ATTTAAA--T----GTAAGGTCA--GATAGA----AGG---G---TTTAGAC-----TGTCGGGACGGGTGGTGTTGGCAACTTTCGGACGCATGGT-GTTGTAACTTCGGACAATGTTTTTTAA-AATTTTGTTGTTTCCTTATTA-TCTGTAGTT-GATTATATGA-CATGCTATGCTC-CATTTTTGTGGACA-----TAGAAGCTTGATTTATTTTACAATAATAG-TTTTCGTTTTGTTTGTAATTCTTTAATTAAGTATCGGGTAACTTTTACGCGGAAAGGTAGGT--TATGAAGGACTTCGTTTTG-GT-GTCAAAGCAAAATGGAATGCTGG-GA-CGTTCACGTTCAAAGTTTAAGG---GTGAAGGGTCATA---T---TGAGATGT----CAACCTGAGTCAGTATCGTTGTTTAAGCGACAGTC--GCACTGATAGTTA--GGTGCTTTATCTCATGTTTGTGAATATATCGAGTT-TTAGATAC--AAGTTTATGTGTAGAAGCAAGGTAAC----AAAAGAAGTGCGAGATATAGACGCGTTAATATCGACTGGTCCGAAATATTATCAGACCGTACCGATAATT-CAACAGTT
gi|3 : TAAGGAAAACTGTTGATA-------TTTCGGACACC--TCGCTA--TGAATTTC-GGAA-ACGCTC-TTC-GTCTAA--CCA-CT-G-----------AACATA--GGCTTAT-CG-TATA-TCG--GTAGTAACAACGAACATTCT---AG--ATTGT--TTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACC-ACA-TATGAACATTTAAA--C----G--AAGTCA--GATAGA----AGG---T---TATA-AC-----T-TCGG-ACG------------------------CACGGT-GTGGTAACTTCGGACA--GTTTTT--TTAATTAGGTTGTTTCCTT-TTATTCTGTGGTTCA-----ATGG-CATTT-ATGCTCTCATTTTTG--CACAC----TAGAAGC-TGATTTATTTTGT-ATAATAG-TTTTGATTTTGTTTGTAATCTTTAAACGG--TATC-GGTAACTTTTAC-CGGGAAAGTAGGT-CTTAGGAGGACTTCATTTTTCCCTATCAAG-CAAAATGG-ATGCTAACGG-CTTTCAC-TTCAAAGTT----A---GTGAA-GGTCATG---TATTT--AAT-T----CAACC--AATCAG-ATCTTAGTT------ACACAT--GCGCAAATAATTATAGGTGTTTT---CCAT-TTCGTAAATATATCAAG-T-TCAGATAT--AAGTTTAAATTTAGAA-CAA-GTAAC----AAA--------------TAAA-GCTTTTTAATTGACT-GTCCGAAA---TATCACACCGT-CCAA-AATTCCAACAGTTgtcgcgtagtctt
gi|4 : GTAGGGGAAACTGTTGATA-------TTTTGGACACCAGTGGCAA--TGAAATTC-GACA-ATGCTC-CTC-GTCTAA--CCA-TT-GTTAGAACAGTAAACATA--GACTTAT----TACA-TC-----------AACGATCATACC---GG--ATTGT--ATTCTCTGGA-TTCATCCAGATTTTTT--TTCTGTTTATGTC-ACA-AATAAAAATTTAAA--C----G--AAGTCA--GATTGA----AGGGTATACATATA-AC-----T-ATGG-ACGA-TGGTATTG-CTACTT-CAGACAACTGCT--TTATAACTAAGGACA----CTCT--G-AATTTTGTCATTTCCTT-TCATTTTCTGGGTCG-----GTAA-TATTTGATGGTAT--TTTTTG-GCACAC----TAGAAGT-TGAATTATTGTAT-GTAGTAG-T----ATTTTG------ATCTTTGAATTA--TATC-GTTCAATTTTAC-AGGGAAATTATGTGTTTAAGAGGACTTCATTTTGTCG-ATCTAA-CAAATTGG-GTGGTGGCGA-CATTCAT-TGCAAAGTT----A---GTCAA-GGCCATG-----------AT-T----C
gi|5 : TA--TGAATTTC-GGA---TACTC-TTAAGTCTA---CCA-CT-G-----------AACATACTGGCTTAT-CG-TATAGTCGTCACAGTAAC-ACG-ACATTCT----G--ATTGT--GTTTTCGCGG-TTCATT-GGATTTTT--CCGCTATTCATATT-ACA-TATGAATCTTTAAAACC----G--AAGTCA--GATAGA----AGG---T---TATA-ACTTTAAT-TCGG-ATGG-TGGTGTTG-CAA-TT-C-GACACATGGTGGTTGTAACT--AGACA--G--TCTA-A-AATTAGGTT-TTTCC-T-TTATTCTGTGGTTCC-----ATGACCATTTTATGCTCTCATTTTT--GCACA-----TA-AAGC-TGAATTATTTAAT-ATA-TAGCCTTTGATTTT-TTTTT-ATCTTTAGA-----------------TTTAC-CAGG-TAGTAAGT-CTC-GGAGGAGCTTATTTTGCCT-ATCAAA-TAAA--------ATGGCGACCTTTCAC-TTC-AAGTT----A---GT-AA-GGTCATGTATT---T--AAT-T----CAACC--AATCAG---------T------ACATGC--GCCCTAATAATTA--GGTGTTTT---CCAT-TTCGTtat
gi|6 : -GTTTTA--CCA-CT-G-----------AATATA--GTCGTAT-TA-TATA-TCG--ATTGCTTCATTGAACATTCCTGAAC--ATTGT-----TTCGGGT-GTCCTC-GGAATTTTTCATG----TTATACT-------TGCACAGCTAAA--CTCGAG--AAA-CAACGATAGGTCGTATG---T---TGTA-AC-----T-TCGA-ACAG-TGGTGTTA-TTATTT-CGGACACATGGT-GTTACAACTTCGGACA--G
gi|7 : --GGCTTAT-CG-TATA-TCG--GTAGAAAAAACGAACATTCT---AG--ATTGT--GTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACT-ATA-TATGAACATTTAAA--C----G--AAGTCA--GATAGA----AGG---T---TATA-AC-----T-TCGG-ACGG-TGGTGTTG-CAGCTT-CGGACGCATGGT-GTTGTAACTTCGGATA--GT
gi|8 : TGAA-GGTCAT----C---T--ATT-TGAGGCGACC--AATCGG-AGCTTA---------ACACGCATGCGCACTTAAATC--GGTGTTTT---CCAA-TTTGTAAAAATATCGAG-GATCATAAAC--AACTTTAAATATAGAA-CAG-ACAAC----AAAAGAAA-GTAAATTATATG-GCTTTTTTATTGACT-GTCCGAAA---TAc
gi|9 : TGTTTTTGTTTTTG-GCACACGTAGTAGAAGT-TGAATTATTGTAT-GTAGTAG-TTTTGAT------------CTTTGAATTA--CATC-ATTAAATTTTAC-AGGGAAATTAGGA-TTCGGGAGAACTTCATTTTGCCG-ATCAAA-AAAATTGG-ATGGTGGAGA-CATTCAC-TGCAAAGTT----A---g
blockSeqs : TCGTTGT AG TT A T T A TT T G TTAGAACAGTA CT GCGG G TC C TGAAC TGG G C C G C CTCGA TA AC TCGT GTATACA G TTTAA G G G G A C T G G T ATGT TAA T G A GATTAT C T C GT CGTAG T A G A G C GTTTGTA T AG G G C G GT T CT G T A G A C A G G TAAGG G G GTATTT G GAGG TG TATCGTTGTTTAAGCG T AT A TG TA ATC G G TT TT T G G AACA C T AA G C G AT G TAT A T C
blockSeqs : . T . . . . . . . G . . CG . . C AGTA T . . . . A ACC . . . G . . . . . . T C . A . T GT TT A G . A . G C T C . T T . A . GTTTGTA C . . G C . C A G . A . C C . G . T A G . GTATTT . . . ATCTTAGTT A . G AA . . . A GA . G . . . T G GA G . T TA . . . . C
blockSeqs : . . . . . . . . . . . . CG . . C AG A . . . . T T . . . T . . . . . . A T . G . A GT AA T A . G . T C G C . T T . A . TTTTT T . . T A . C A T . A . C C . T . T A C . ATTGA . . . AGCTTA G . C TA . . . G T . T . . . . A AT A . T TT . . . . .
blockSeqs : . . . . . . . . . . . . TA . . A GG G . . . . C C . . . T . . . . . . T C . G . T G G A . . C . . T G C . A G . G . G T . . T A . T G G . T . G C . A . G A G . CT . . . T G . G AC . . . . T . A . . . . . . T .
blockSeqs : . . . . . . . . . . . . CG . . . AG G . . . . C C . . . T . . . . . . A . . . . T . . G . . A T . G . . . . . . . . . . T . T . A A . T . T A . . G . .
blockSeqs : . . . . . . . . . . . . . . . G . . . . . . C . . . T . . . . . . . . . . . . . . . A G . . . G . . . G . . A . G A
blockSeqs : . . . . . . . . . .
blockSeqCons : N*** A******* GATTT****** ACTT************ T**
originalCons : NGTAGGGGAAACTGTTGATA-------TTTCGGACACC--TCGCTA--TGAATTTC-GGAA-ATGCTC-TTC-GTCTAA--CCA-CT-G-----------AACATA--GGCTTAT-CG-TATA-TCG--GTAGTAACAACGAACATTCT---AG--ATTGT--GTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACT-ACA-TATGAACATTTAAA--C----G--AAGTCA--GATAGA----AGG---T---TATA-AC-----T-TCGG-ACGG-TGGTGTTG-CAACTT-CGGACGCATGGT-GTTGTAACTTCGGACA--GTTTCT--A-AATTNGGTTGTTTCCTT-TTATTCTGTGGTTCG-----ATGA-CATTTTATGCTCTCATTTTTG-GCACAC----TAGAAGC-TGANTTATTTTAT-GTAGTAG-TTTTGATTTTGTTTGTAATCTTTAAATTA--TATC-GGTAACTTTTAC-CGGGAAAGTAGGT-CTCNGGAGGACTTCATTTTGCCN-ATCAAA-CAAANTGG-ATGNTGGCGA-CGTTCAC-TTCAAAGTT----A---GTGAA-GGTCATG---T---T--AAT-T----CAACC--AATCAG-ATCTTAGTT------ACACGC--GCGCANATAATTA--GGTGTTTT---CCAT-TTCGTAAATATATCGAG-T-TCAGATAT--AAGTTTAAATTTAGAA-CAA-GTAAC----AAAAGAAACGCGAGATATAGA-GCNTTTNNATTGACT-GTCCGAAA---TATCACACCGT-CCGA-AATTCCAACAGTTTCCCCATAT
finalCons : NGTAGGGGAAACTGTTGATA-------TTTCGGACACC--TCGCTA--TGAATTTC-GGAA-ATGCTC-TTC-GTCTAA--CCA-CT-G-----------AACATA--GGCTTAT-CG-TATA-TCG--GTAGTAACAACGAACATTCT---AG--ATTGT--GTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACT-ACA-TATGAACATTTAAA--C----G--AAGTCA--GATAGA----AGG---T---TATA-AC-----T-TCGG-ACGG-TGGTGTTG-CAACTT-CGGACGCATGGT-GTTGTAACTTCGGACA--GTTTCTN---AATTNGGTTGTTTCCTT-TTATTCTGTGGTTCG-----ATGA-CATTTTATGCTCTCATTTTTG-GCACAC----TAGAAGC-TGANTTATTTTAT-GTAGTAG-TTTTGATTTTGTTTGTAATCTTTAAATTA--TATC-GGTAACTTTTAC-CGGGAAAGTAGGT-CTCNGGAGGACTTCATTTTGCCN-ATCAAA-CAAANTGG-ATGNTGGCGA-CGTTCAC-TTCAAAGTTA-------GTGAA-GGTCATGATTT------AAT-T----CAACC--AATCAGACTT------------ACACGC--GCGCANATAATTA--GGTGTTTT---CCAT-TTCGTAAATATATCGAGT--TCAGATAT--AAGTTTAAATTTAGAA-CAA-GTAAC----AAAAGAAACGCGAGATATAGA-GCNTTTNNATTGACT-GTCCGAAA---TATCACACCGT-CCGA-AATTCCAACAGTTTCCCCATAT
Alignments
lowQualScore : 1111111 11 1 22222222222 1111111 111 1111111 1111 1111111 11111 2222 222222 11111 1111111 11 11111111 22 11 888888888888888 22222222 11 111 111 11 1111 1 1 111 1 1
lowQualScore : 8888888 55 77 5 5 5 5 66 5 0 33333333333 66 6666 5 77 0 7 1111111 000 5 5 5 5 3 2222222 77 77 2222 4444444 5 44444 5 5 5 5 1 3 5 3 0 5 1 8888 8888 1 3 0 8 0 111111 8 0 5 1 66 0 66666 5 1 1 5 4 5 0 2222222 0 1 99 6 2 2 6 00 7 66 5 6 5 1 4 5 4 5 1 55555555 2 6 55 8 8 11 222222222222222 8 77777777 1 22 11 444 8 1 111 11 1 8 8 7777 0 1 3 22 1 8 1 22 0 777 0 0 2
lowQualScore : ....... .. .. . . . . .. . . ........... .. .... . .. . . ....... ... . . . . . ....... .. .. .... ....... . ..... . . . . . . . . . . . .... .... . . . . . ...... . . . . .. . ..... . . . . . . . ....... . . .. . . . . .. . .. . . . . . . . . . ........ . . .. . . .. ............... . ........ . .. .. ... . . ... .. . . . .... . . . .. . . . .. . ... . . .
lowQualScore : 6666666 88 99 7 7 7 0 99 0 0 88888888888 99 7777 7 99 3 9 6666666 999 0 0 0 0 0 3333333 99 99 1111 4444444 7 33333 7 7 7 7 9 0 7 0 4 7 7 2222 0000 0 2 8 0 8 444444 0 6 6 0 44 7 44444 7 0 3 7 0 7 1 3333333 3 7 22 7 5 5 7 33 5 77 7 6 7 0 3 7 0 7 3 33333333 5 7 22 0 0 00 444444444444444 0 44444444 4 44 00 000 0 4 888 00 0 0 0 0000 8 4 2 44 4 0 0 00 0 555 0 0 5
consensus : NGTAGGGGAAACTGTTGATA-------TTTCGGACACC--TCGCTA--TGAATTTC-GGAA-ATGCTC-TTC-GTCTAA--CCA-CT-G-----------AACATA--GGCTTAT-CG-TATA-TCG--GTAGTAACAACGAACATTCT---AG--ATTGT--GTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACT-ACA-TATGAACATTTAAA--C----G--AAGTCA--GATAGA----AGG---T---TATA-AC-----T-TCGG-ACGG-TGGTGTTG-CAACTT-CGGACGCATGGT-GTTGTAACTTCGGACA--GTTTCT--A-AATTNGGTTGTTTCCTT-TTATTCTGTGGTTCG-----ATGA-CATTTTATGCTCTCATTTTTG-GCACAC----TAGAAGC-TGANTTATTTTAT-GTAGTAG-TTTTGATTTTGTTTGTAATCTTTAAATTA--TATC-GGTAACTTTTAC-CGGGAAAGTAGGT-CTCNGGAGGACTTCATTTTGCCN-ATCAAA-CAAANTGG-ATGNTGGCGA-CGTTCAC-TTCAAAGTT----A---GTGAA-GGTCATGTATTTA-AT-TCAACC--AATCAG-------A-TCTTAGTTA-CACG-----C--GCGCANATAATTA--GGTGTTTT---CCAT-TTCGTAAATATATCGAG-T-TCAGATAT--AAGTTTAAATTTAGAA-CAA-GTAAC----AAAAGAAACGCGAGATATAGA-GCNTTTNNATTGACT-GTCCGAAA---TATCACACCGT-CCGA-AATTCCAACAGTTTCCCCATAT
Reference ( family-293 ) : NGTAGGGGAAACTGTTGATA-------TTTCGGACACC--TCGCTA--TGAATTTC-GGAA-ATGCTC-TTC-GTCTAA--CCA-CT-G-----------AACATA--GGCTTAT-CG-TATA-TCG--GTAGTAACAACGAACATTCT---AG--ATTGT--GTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACT-ACA-TATGAACATTTAAA--C----G--AAGTCA--GATAGA----AGG---T---TATA-AC-----T-TCGG-ACGG-TGGTGTTG-CAACTT-CGGACGCATGGT-GTTGTAACTTCGGACA--GTTTCT--N-AATTNGGTTGTTTCCTT-TTATTCTGTGGTTCG-----ATGA-CATTTTATGCTCTCATTTTTG-GCACAC----TAGAAGC-TGANTTATTTTAT-GTAGTAG-TTTTGATTTTGTTTGTAATCTTTAAATTA--TATC-GGTAACTTTTAC-CGGGAAAGTAGGT-CTCNGGAGGACTTCATTTTGCCN-ATCAAA-CAAANTGG-ATGNTGGCGA-CGTTCAC-TTCAAAGTT----A---GTGAA-GGTCATG-ATTTA-AT-TCAACC--AATCAG-------A-C-----TTA-CACG-----C--GCGCANATAATTA--GGTGTTTT---CCAT-TTCGTAAATATATCGAG-T-TCAGATAT--AAGTTTAAATTTAGAA-CAA-GTAAC----AAAAGAAACGCGAGATATAGA-GCNTTTNNATTGACT-GTCCGAAA---TATCACACCGT-CCGA-AATTCCAACAGTTTCCCCATAT
gi|1 : GTAGGGGAGACTGTTGATA-------TTTTGGACACC--TCGCTA--TGAATTTC-GGAA-ATGCTC-TTC-GTCTAA--CCA-TT-G-----------AACATA--GGCTTAT-CG-TATA-TCG--GTAGTAAAAACGAACATTCT---AG--ATTGT--GTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACT-ATA-TATGAACATTTAAA--C----G--AAGTCA--GATAGA----AGG---T---TATA-AC-----T-TCGG-ACGG-TGGTGTTG-CAACTT-CGGACGCATGGT-GTTGTAACTTTGGACA--GTTTCT--A-AATTCGGTTGTTTCCTT-TTATTCTGTAGTTCA-----ATGA-CATGCTATGCTCTCATTATTG-G-ACAC----TAGATGC-TGATTTATATTAA-ATAATAG-TTTTGGTTTTGTTTGTAATCTTTAAATTA--TATT-GGTAACTTTTAC-CGGAAAAGTAGGT-CTCTGAAGGACTTCGTTTTGCCT-GTCAAA-CAAAATGG-ATGCTGGCGA-CGTTCAC-TTCAAAGTT----AAGGGTGAA-GGTCATA---TTA-AT-TCAACC--AATCAG-------A-TCTTAGTTA-CACA-----T--TCACATATAATTA--GGTGTTTT---CCAT-TTCGTAAATATATCAAG-T-TCAGATAT--AAGTTTAAATTTAGAA-CAA-GTAAC----AAAAGAAATGCGAGATATAAA-GCGTTTAAATTGACT-GTCCGAAA---TATCACACCGT-CCGA-AATTCCAACAGTTTCCCCATAT
gi|10 : tCTTCATTTTGCCG-ATCAAA-CAAATTGG-ATGGAGGAGA-CATTCAC-TGCAAAGTT----A---gtattaa
gi|11 : aacattccagaaaaatttagtgtactacatgtaggtaanTAGGGGAAACTGTTGATATCGTTGTTTCCGGA-ACCT-TCGCTATTTGAATTTTAGGAATATGCTCTTTC-GTCTAATTTCA-TTGG-----------AACA
gi|12 : AGGGGAAACTGTTGATA-------TTTCGGACACC--TCGCTG--TGAATTTT-GGAA-ATGCTC-TTC-ATCTAA--CCATCTGG-----------AGCATA--GG
gi|13 : TATAT---G-T-TCAGATGTTTAAGTTTAAATTTAGAA-CAA-GTAATAACAAAAAGAAACGCTAAATATCGA-G
gi|14 : TAGGGGAAACTGTTGATA-------TTTCGGACACC--TCGCTT--TGAATTTT-GGAA-ATGCTC-TTC-GTCTAA--CCA-TT-G-----------AACAggccgttc
gi|15 : acTTTTTT-GCGCAC----TAGAATG-TGAATAATTGTAT-GTAGTAG-TTTTGATCTT
gi|16 : tttttggggtttGT-TTCATT-GGATTTTTTCCTGCTATTTATATT-ACA-TATtgaatt
gi|17 : ATCACACCGT-CCGA-AATTCCAACAGTTTC
gi|18 : TAGGGGAAACTGTTGATA-------TTTCGGACAattaaaa
gi|2 : caaa--GGCTTATGCGGTATA-TCG--GTAGTAA-AACGAACATTCT---AGTAATTGTTGGTTTTTCGGTGTTCATC-GTATTTGTTCCTGCTATTTATACTCATAGTATGAG-ATTTAAA--T----GTAAGGTCA--GATAGA----AGG---G---TTTAGAC-----TGTCGGGACGGGTGGTGTTGGCAACTTTCGGACGCATGGT-GTTGTAACTTCGGACAATGTTTTTTAA-AATTTTGTTGTTTCCTTATTA-TCTGTAGTT-GATTATATGA-CATGCTATGCTC-CATTTTTGTGGACA-----TAGAAGCTTGATTTATTTTACAATAATAG-TTTTCGTTTTGTTTGTAATTCTTTAATTAAGTATCGGGTAACTTTTACGCGGAAAGGTAGGT--TATGAAGGACTTCGTTTTG-GT-GTCAAAGCAAAATGGAATGCTGG-GA-CGTTCACGTTCAAAGTTTAAGG---GTGAAGGGTCAT--ATTGAGATGTCAACCTGAGTCAGTATCGTTG-T-----TTA-AGCGACAGTC--GCACTGATAGTTA--GGTGCTTTATCTCATGTTTGTGAATATATCGAGTT-TTAGATAC--AAGTTTATGTGTAGAAGCAAGGTAAC----AAAAGAAGTGCGAGATATAGACGCGTTAATATCGACTGGTCCGAAATATTATCAGACCGTACCGATAATT-CAACAGTT
gi|3 : TAAGGAAAACTGTTGATA-------TTTCGGACACC--TCGCTA--TGAATTTC-GGAA-ACGCTC-TTC-GTCTAA--CCA-CT-G-----------AACATA--GGCTTAT-CG-TATA-TCG--GTAGTAACAACGAACATTCT---AG--ATTGT--TTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACC-ACA-TATGAACATTTAAA--C----G--AAGTCA--GATAGA----AGG---T---TATA-AC-----T-TCGG-ACG------------------------CACGGT-GTGGTAACTTCGGACA--GTTTTT--TTAATTAGGTTGTTTCCTT-TTATTCTGTGGTTCA-----ATGG-CATTT-ATGCTCTCATTTTTG--CACAC----TAGAAGC-TGATTTATTTTGT-ATAATAG-TTTTGATTTTGTTTGTAATCTTTAAACGG--TATC-GGTAACTTTTAC-CGGGAAAGTAGGT-CTTAGGAGGACTTCATTTTTCCCTATCAAG-CAAAATGG-ATGCTAACGG-CTTTCAC-TTCAAAGTT----A---GTGAA-GGTCATGTATTTA-AT-TCAACC--AATCAG-------A-TCTTAGTTA-CACA-----T--GCGCAAATAATTATAGGTGTTTT---CCAT-TTCGTAAATATATCAAG-T-TCAGATAT--AAGTTTAAATTTAGAA-CAA-GTAAC----AAA--------------TAAA-GCTTTTTAATTGACT-GTCCGAAA---TATCACACCGT-CCAA-AATTCCAACAGTTgtcgcgtagtctt
gi|4 : GTAGGGGAAACTGTTGATA-------TTTTGGACACCAGTGGCAA--TGAAATTC-GACA-ATGCTC-CTC-GTCTAA--CCA-TT-GTTAGAACAGTAAACATA--GACTTAT----TACA-TC-----------AACGATCATACC---GG--ATTGT--ATTCTCTGGA-TTCATCCAGATTTTTT--TTCTGTTTATGTC-ACA-AATAAAAATTTAAA--C----G--AAGTCA--GATTGA----AGGGTATACATATA-AC-----T-ATGG-ACGA-TGGTATTG-CTACTT-CAGACAACTGCT--TTATAACTAAGGACA----CTCT--G-AATTTTGTCATTTCCTT-TCATTTTCTGGGTCG-----GTAA-TATTTGATGGTAT--TTTTTG-GCACAC----TAGAAGT-TGAATTATTGTAT-GTAGTAG-T----ATTTTG------ATCTTTGAATTA--TATC-GTTCAATTTTAC-AGGGAAATTATGTGTTTAAGAGGACTTCATTTTGTCG-ATCTAA-CAAATTGG-GTGGTGGCGA-CATTCAT-TGCAAAGTT----A---GTCAA-GGCCATG-ATT
gi|5 : TA--TGAATTTC-GGA---TACTC-TTAAGTCTA---CCA-CT-G-----------AACATACTGGCTTAT-CG-TATAGTCGTCACAGTAAC-ACG-ACATTCT----G--ATTGT--GTTTTCGCGG-TTCATT-GGATTTTT--CCGCTATTCATATT-ACA-TATGAATCTTTAAAACC----G--AAGTCA--GATAGA----AGG---T---TATA-ACTTTAAT-TCGG-ATGG-TGGTGTTG-CAA-TT-C-GACACATGGTGGTTGTAACT--AGACA--G--TCTA-A-AATTAGGTT-TTTCC-T-TTATTCTGTGGTTCC-----ATGACCATTTTATGCTCTCATTTTT--GCACA-----TA-AAGC-TGAATTATTTAAT-ATA-TAGCCTTTGATTTT-TTTTT-ATCTTTAGA-----------------TTTAC-CAGG-TAGTAAGT-CTC-GGAGGAGCTTATTTTGCCT-ATCAAA-TAAA--------ATGGCGACCTTTCAC-TTC-AAGTT----A---GT-AA-GGTCATGTATTTA-AT-TCAACC--AATCAG----------------TA-CATG-----C--GCCCTAATAATTA--GGTGTTTT---CCAT-TTCGTctat
gi|6 : -GTTTTA--CCA-CT-G-----------AATATA--GTCGTAT-TA-TATA-TCG--ATTGCTTCATTGAACATTCCTGAAC--ATTGT-----TTCGGGT-GTCCTC-GGAATTTTTCATG----TTATACT-------TGCACAGCTAAA--CTCGAG--AAA-CAACGATAGGTCGTATG---T---TGTA-AC-----T-TCGA-ACAG-TGGTGTTA-TTATTT-CGGACACATGGT-GTTACAACTTCGGACA--G
gi|7 : --GGCTTAT-CG-TATA-TCG--GTAGAAAAAACGAACATTCT---AG--ATTGT--GTTTTCGGGT-TTCATC-GGATTTTTTCCTGCTATTTATACT-ATA-TATGAACATTTAAA--C----G--AAGTCA--GATAGA----AGG---T---TATA-AC-----T-TCGG-ACGG-TGGTGTTG-CAGCTT-CGGACGCATGGT-GTTGTAACTTCGGATA--GT
gi|8 : TGAA-GGTCATCTATTTG-AG-GCGACC--AATCGG-------AGC-----TTAACACG-----CATGCGCACTTAAATC--GGTGTTTT---CCAA-TTTGTAAAAATATCGAG-GATCATAAAC--AACTTTAAATATAGAA-CAG-ACAAC----AAAAGAAA-GTAAATTATATG-GCTTTTTTATTGACT-GTCCGAAA---TAc
gi|9 : TGTTTTTGTTTTTG-GCACACGTAGTAGAAGT-TGAATTATTGTAT-GTAGTAG-TTTTGAT------------CTTTGAATTA--CATC-ATTAAATTTTAC-AGGGAAATTAGGA-TTCGGGAGAACTTCATTTTGCCG-ATCAAA-AAAATTGG-ATGGTGGAGA-CATTCAC-TGCAAAGTT----A---g