lowQualScore : 1111111111111111111111 111111111111111 11111111111111 11111111111111111111111111111111111111111
lowQualScore : 1 9999999999999999999999 2 3333333333 4444444444444444444444444 1111 3333333333 44444444444444444444 111 1 1111 444444444444444444444 3 55555555 111 11 222222222 111111 1111 22 2222 111 111 33333 111 8888888888888888888888 1 33333 2222 1 555 2 1111 1 1 11 33333 1 2 33 1 444 1 11 000000000000000 222 11 1 1 1 1 555555 1 1111 11 444444444444 1 777 1111 222 11 00000000000000 1 55555555555555555555 111 222222 222 111111 333 11 11111 33333333333333333333333333333333333333333 3333333333333333333333 5555 11 2222222 3 77777777777777777777777777777 2 111 11 555 22222222222 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22 55555555555555 666666666666666666666 11 6666666666666 333 11 11111111 222222222222 222222222 88888888888888888888888888888888888888888888 3333 11 3333 1 1111 3 222222 111 11 444444 111 111111 2 2222222 111 44444444 11
lowQualScore : 5 5555555555555555555555 99 7 9999999999 5 5 5 9999999999999999999999999 6 4444 3333333333 22222222222222222222 000 1 2222 5 888888888888888888888 5 2 6 1 5 77777777 5 111 77 3 777777777 77 111111 6666 33 9999 0000 111 1 777 33333 8 8 999 7777777777777777777777 3 77777 3333 3 000 8 1 8888 3 7 44 66666 3 6 1 0 6 1 11 3 0 0 444 6 2 11 999999999999999 000 2 9 77 99 6 0 0 0 2 6 6 333333 3 0 8888 55 22 000000000000 8 0 000 3333 2 555 2 22 2 99999999999999 1 8 33333333333333333333 3 444 222222 3 444 1 5 8 000000 0 8 222 1 77 8 55555 0 00000000000000000000000000000000000000000 8 6 5 5 1 8888888888888888888888 6 77 5 6 5 5 5555 0 88 99 99 8888888 5 0 4 5 5 5 11111111111111111111111111111 6 6 6 555 9 77 111 77 666 6 22222222222 6 6 6 1 3 5555 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 55 66 6 6 6 6 6 5 11111111111111 0 333333333333333333333 1 1 11 999 6666666666666 444 11 8 99999999 1 6 99 1 22 666666666666 5 0 111111111 1 00000000000000000000000000000000000000000000 55 3333 1 55 1 4444 6 3 7777 6 4 1 777777 6 111 8 8 66 88 222222 0 8 8 444 0 0 666666 8 3 888 1 4444444 111 3 55555555 77
lowQualScore : . ...................... .. . .......... . . . ......................... . .... .......... .................... ... . .... . ..................... . . . . . ........ . ... .. . ......... .. ...... .... .. .... .... ... . ... ..... . . ... ...................... . ..... .... . ... . . .... . . .. ..... . . . . . . .. . . . ... . . .. ............... ... . . .. .. . . . . . . . ...... . . .... .. .. ............ . . ... .... . ... . .. . .............. . . .................... . ... ...... . ... . . . ...... . . ... . .. . ..... . ......................................... . . . . . ...................... . .. . . . . .... . .. .. .. ....... . . . . . . ............................. . . . ... . .. ... .. ... . ........... . . . . . .... ........................................................................................... .. .. . . . . . . .............. . ..................... . . .. ... ............. ... .. . ........ . . .. . .. ............ . . ......... . ............................................ .. .... . .. . .... . . .... . . . ...... . ... . . .. .. ...... . . . ... . . ...... . . ... . ....... ... . ........ ..
lowQualScore : 0 0000000000000000000000 22 5 4444444444 7 7 0 7777777777777777777777777 7 2222 2222222222 88888888888888888888 000 4 1111 4 666666666666666666666 8 5 7 4 7 11111111 7 000 44 2 333333333 99 000000 6666 66 3333 8888 777 4 666 88888 0 0 000 7777777777777777777777 3 00000 0000 3 000 7 0 3333 3 3 33 00000 3 7 0 7 7 0 99 2 0 8 888 0 8 22 000000000000000 222 0 2 00 55 0 8 0 0 5 0 2 555555 0 0 2222 55 22 888888888888 8 0 000 2222 5 222 5 55 5 88888888888888 6 0 66666666666666666666 2 000 000000 2 888 4 0 0 666666 8 0 888 0 44 0 66666 8 22222222222222222222222222222222222222222 0 7 7 7 4 6666666666666666666666 6 99 7 1 0 0 9999 8 00 66 99 4444444 7 1 3 4 7 7 44444444444444444444444444444 7 7 7 000 0 00 888 77 888 7 55555555555 7 7 7 0 7 8888 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 44 7 7 7 7 7 6 66666666666666 8 666666666666666666666 4 4 00 222 8888888888888 666 00 0 66666666 0 7 22 0 11 777777777777 7 7 777777777 7 55555555555555555555555555555555555555555555 00 3333 7 88 0 3333 7 3 5555 7 3 7 555555 7 777 0 0 44 66 444444 6 2 0 444 8 8 000000 0 8 888 5 2222222 000 2 33333333 33
consensus : AATTGTAAATAACAAAGT---GTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CA-A--ATAGT-CC-AAATTAATTTTG------------TTCTG-GT-----TTACCCCC-TT----TCAG-CCTGA---TCATC-------------TCAGG-TACAGA---TT-ACCA----AATTCG-------A-CCCGTCTTA-A-ATTTA-GCGCG-AGTTATATC-GGTACG---AC-TT-G-TTTAATTCCCAACACCGGAA--GGCAAC-AGCT--AC---A--GTTTGT-TACACTTG--CCGACTA-C--TT---TGCCTGATTTA--TCTCG--TACCATCCA-TCGACA-TCCATC-TGCTGT------TTTTC-CGCAAA-TCATCACT-ACGCCAT--CCACT-AG-AAACG-CTTCGA--CGAACG-AGCGTCCCGAAA-CGCCGCCGG-CAGAC-AATGGTCA-CACCTTTCCCGGGGGAAGGGGGGTCAGG-AGGAGACC-CCGATCGGAGG-CGCAGCCAGAGCGT-CCTGCGGA--GGTTGC-----GCCTGCCCC--TTTTTCCTCT-ACCACTACCCAGACGTTCC-AGT-CNGACTCTGACGAC-CNG-CAACNC-AGCCG-C-CGGCGGTGGCCNGCTCCCGG-CCAGTCG--CC-------CCTGCCTC-GTT---GCC-GGCATTACCTCCCCCNTACCCAC-GTGGA--GT-CCACACT-GAGGGCACG-T------GTCA---------AGCC---AGGCAGGG---GTGAGT-ACTTCAC-ACCTGATT-TTAA-TATAC-G-CATTACGAGTCCCTCTGT-TTATCAGCATA--CAAGTTGTCAC-ATC-AC-TGGGGATCAA-TTGGGG-C---AT---------CCCCANTAAA-CTCA-AG-GTCAAAATCTT------G-G-A-G---G--TCAGT--TCA-TNGAC-C-TCTCC--GCTGCTTCTCAAATTCCGCCTCGGAT-T-T--AA-ACAATTTTGAGTCCCAGGGC-GACTT-ACAAATTCG-CAATGGG-CAGATTGTGCAT-CA--TG-CAAC-CTAAACC-TAA-TNCATTTTTGC-CTATCGAAAAGTGGACATCTG-CT-T-CTT-AGT-TTTTTTAC-CCA-GCATCA-T-GCTCGAAAAACATGTCCACAAAG------NA-AN-TCAACT-GCTTAAGTA-CATC-AGGGA--TATTCGCC----TAGC------------AGC-----TT-AGCAG-GTCTGGCAACCTG-G-TAC-A-AGTAT-GATGAGCAA-TTATCGCTTA-ACGTAAGGCTGGCTG-CAC-C-NCATNT-T-CGTGGGGCG--AAAT-C-AATACCGAAAGTACCTGGCTTTTGTATGTGT--CC-GGTAG--T-TCAAACACAGACACA-TC--TGCCCACCCCTGTAAG-T------A-ATGCA-AGTACCA--AATCTGCTGA---TG--NN--AA-----CCAA-GTCACCAAC--TTAG-TG---CAACTATTACAATGCACGT-ACACCATGTCCTTTC--TACCCCA-AATGCA-GG-TT-AN-CCAT-TCT-TGCAAACAGTGCGG-A--G-C-AA---ACACCC-ACA-ANCCA-ACTGC-AACAAGAAGCCA-TCCAGCAA-TATTCAAACTA-GN--C-CCTCGCCAATCGAACA-TTAACTCCTTN--GCA-T-CCCATTTGCAAGGTTATCACGA-TCTAATTTT-NATTTT
Reference ( gi|1 ) : AATTCTAAATAA--AATTCCTGTTT--TG-AAT-ATAATCAGGATTAT--TTGATGTTTATATTCA-A--A-AGT-CC-AAATTAATTTTG------------TTCCG-GT-----TTACCCCC-TT----TCAGGCCTGA---TCATC-------------TCAGGTTACAGA---TT-ACCA----AATTCG-------AACCCGTCTTACA-ATTTATGCGCG-AGTCATATC-G-TACGGGAAC-TT-A-TTTAATTCTAAACACCGGAA--GGCAACCAGCT--AC---A--GTTTGT-TACA--TG--CCGACTA-C--TT---TGCCTGATTTT--TCTCG--T-TCATCCA-TCGACA-TCCATC-TGCTGTGTTTTATTTTC-CACAAAATCTTCACT-ATGC-ATG-CCACT-AGGAAACG-CTTCG---TGAACGGAACGTTTCCAAA-CGTCGCCGA-CAGCC-A-TGGTCA-CACCTT-CCCGGGGAAGGGGGGGTTAGGGAGGAGACC-CCGATCGGAGGTTGCGGCCATAGCGT-CCTGCGGAAGGGTTGTTGTTTGCCTGCCCC--TTTTCCCTCT-ACCACTACCCAAACGTTTC-AGT-CGGACCCAGACGACTCAA-CAACAC-AGCCG-C-CGGCGGTGGCCAGCTCCCGA-CCAGTCG--CC-------CCGGCCTC-GTTTGGGCC-GGTATTACCTCCCCCTTACCCAC-GTGGGCGGTTCCCCACTTGAGGACACG-T------TTCA---------TGCC---AGGCAAGG---GTGA-T-ACTTCAC-ACCTGATT-TTAA-TATACCA-CATTACGAGTCCTTCTGT-TTATCAGCACA--CAAGTTGTCAC------------GATCAA------------AT---------CCCCAATAAA-CTCA-AG-GTCAAAATCTT------G-G-A-G---G--CCAGT--TCA-TTGAC-C-TCTTCCGGCTGCTTCTTAAATTCCACCTCGGA--T-T--AA-ACAATTTTGAG-CCCAAGGC-GACTT-ACAAATTCGCCAACGGGTAAGATTGTGCATCCATTTG-CAAC-CTAAA-C-TAA-TTCATTTTTGC-CTAT--GAAAGTGGACATCTG-CT-T-CTT-AGT-TTTTTTAC-CCA-GCATTA-T-GCTCGAGAAACATGTTCATCGAG------AA-AT-TCAAC--GCTT-AGTA-CATC-A-GGA--TATTCGCC----TAGC------------AGC-----TTAAGCAGTGTCTGGCAACCTG-G-TAC-A-AGTAT-GATGAGC-A-TT-TCGCCTAAACGTAAGGCTGGCTG-CAC-CAACACAC-G-CGTGGGGCG--AAAT-C-AAT-CCGAAAGTACTTGGCTTTTA-ATGTGT--CC-GGTAG--T-TCAAACACAGACACA-TC--TGCCCACCCCTGTAAA-T------A-ATGCA-AGTACCA--AACCTGTTGA---TG--GA--AA-----CCAA-ATCACCAAC--TTA--TGC-CCAACTATTACAATGCACGTCACACCATGTCCTTTC--TACCCTAGAATGCA-GG-TT-AC-CCAT-TTTCTGCAAACAGTGCGG-A--G-C-AA---ACACCC-ACA-AGCCA-ACTGC-AAC--GAAGCCA-TCCAGCAA-TATTCAAACTA-GG--C-CCTCGCCAATCAAACATTTAACTCCTTT--GCA-T-CCCATTTGCAAGGTTATCATGATTCC--TTTT-TATTTT
gi|4 : AATTGTAAATAACAAAGT---GTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CA-A--ATAGT-AC-AAATTAATTTTGGAGGGTGTTTACTTC---AT-----CTATCTAC-TTACGGTCAG--CCGAGAATCATC----------------GGT-ATGGA---TC-CTCA----ATTTTG-------A-CACATTTTA----TTTAGACA-G-GGTTATATC-GGTACG---AC-TT-G-TTTAATTTCCAACAACGGAA--G-CAAC-AGTC--AC---ACGGCTT-T-TACACTTG--G-GACTA-A--ATATATGCCAAATCTA--TTTCC--TACCATCCA-TCGTCA-TCCG----GCGGTATTT-ATCCTC--GTAA-----TCACT-ACCA-ATG-TCACCCACCAAAAG-TTCCAAGATGAATG-AGCGT--CCAAAACACAGTCGG-CAGACGA-TGGACA-CACCTT-CCTGGGGAAGGGGGGGTCAGG-AGGAGACC-CCGACCGGAGGC-GCAGTCACAGCGC-CCTGCAGA--GGTTGC-----GCCTGCCCCCTTTTTTCCTCC-ACC------CAGACGGTCC-AGT-CCTACTTTGACGACGCT--CAACCC-AGCCCTC-CAGCGGTGGTCCGCGCTCAG-CCAGTCGTTCCTCATCTTCCTGCCTT-GTT---GCC-TGCTTTACCTCCCCCA-ACCCAC-GTGGAGTGT-----ACT-GAGGGCACG-T------GTCA---------AGCC---AGGCA-GT---GTGAGT-ATTTCAC-ACC-G--T-TTAA-TATACTG-CATTACGAGTCCT-CTGT-TTACCAGCATA--CAAGTTGTCAC------------GATCAACTTGGGGACCATAT---------CCCCACCAAA-CGCA-AG-GTCAAAATCTA------G-GAA-G---G--TCAGT--TCA-TAGAC-C-TCTC---GCTGCTTC-TAAAATCCGCCTCGGA--T-TTAAA-AC-ATTTTGAGTCCCAGGGT-GACTT-ACAAATCTG-CAATGG--CAGATTGTGCAT-CATT---CATC-CTAAACC-TAA-TACAATTTTGC-CTATCGAAAAGTGGACATCTACCT-C-CTT-AG---TCTTTA--CTA-GCATCA-T-GTTTGAAAAACATGTCCACAAAGC-----AC-AG-CAAAT--ACTTAAGTATTTTC-G-GGA--AATTCGCC----TAGC------------AGC-----TT--GTAG-GTCT-GCAACTTG-G-TAC-A-TGTAT-GACGAGCAA-TA-TCGCTT--ACGTAAGGCT-GCCA-CAC-C-CCATACTT-CGTGGGGTG--AACT-C-AATACTGAA--TAC-TGGCTTTTGTATGTGT--CC-GGTAG--T-TC-AACACAGACACC-CC--TGCCCCCTCC-----------------CGCT-AGT---A--AATCTGCTGA---TGTTGAGTAATCACCCCAA-GTCACCAA
gi|12 : accatgctcttcggtgTCAAGATTATATTTGAT-TTCATAT-CA-A--ATAGT-CC-AAATTAATTTTG------------GATGGTGT-----TTATTTCA-TT----TAAATTCTTA---TTGTCATTGTGAGAATCATCAG--TACAGA---TT-CTCA----ATTCTG-------A---CATATT-CAGATTTA-GCCAG-AGTTATATCGG-TAC---AAC-TT-G-ATTAATTTCCAACACTGGAAGCGGCAGTCA--T--AA---G--GCTT-T-TACACTTGGACCAACCA-C--TT---t
gi|20 : GATTAT--TTGAT-TTTATAT-CA-A--ATAGT-CC-AAATTAATTTTG------------TTCTGCGT-----TTACCCCC-TT----TCA-GCCTGA---TCATC-------------TCAAG-TACAGA---TT-ACCA----AATTCG--------ACCCGTC
gi|24 : GGTTAT--TTGAT-TTTATA-TCATA--T-AGT-CCAAAATTGATTTTG------------TTTTGTGT-----TT
gi|2 : TAT--TTGA-GTTTATAT-CG-ATTA-GGTGCC-AAAT-AATTTTG------------TTCTG-TC-----TTACCGCT-TA----TCAG-CCTGA---TCATC-------------TCAGG--ACAGA---TTTACCA----A-TTCG-------A-CCCGTCT-AAA-ATTTA-GCGCGGAGTTATATC-GGTCCG---AC-TTTG-CTTAATTCTGA-CACCGGAA--G--AAC--ACT--AC---A--GTT-GTATACA--TG--CCGACTA-CA-TT---TGCCTGATTTTCTTCTCGGGT-CAATCCAGTCGACAATCCATCATGCTGT------TTTTCACACAAATTCATCACT-ATGCCAT--CCACT-AG-AAACGGCTTCGA--TGAACGAAGCGTTCCGAAA-CG-CGCCAAACAGAC-AATGGTCAACACCTTTCCCGGGGGAAGGGGTGTTAGGA--GAG-CC-CCGTGCGGGG--CGCAGCCAGAGCGT-CCTGCGGA--GGTTGT-----GCATGCCC---TTTTCCCTC--ACTCTTACCCAGACGTTTCCAGTTCGGACTC-GACGAC--AGTCAACAC-AGCTG-C-CGGCGGTGGCCA-CTCCCGA-CCAGTCG--CC-------CCGGCCTC-GCT---GCCAGGTATTACCTCCCCGCTAGCCACTGT-GGCG--TCCACA---GAGGACACGTT------TTCA----------G-C---AGGCAGAG---GTGAGT-ACTT--C-ACCTGATTATTAATTATAC---CATTACGAGTCC-TCGGTCTTATCAGCATAATC-AGTTGTCAC------------GATCGAATTGGGGTCAT-AT---------CCCC--TAAA-CTCA-AG-GTC-AAATCGT--------G-A-G---G--GCAGT--TCAGTCGACGCGTCT----GCTGC-TCTTTAATCCCA-CTCGGAT-T-T--AA-ACAATTTTG-G-TCCCAGGC---CTTCACAAATTCG-CAATTGGTTAGATTGTG-AT-CA--TGCCAACTCTAAACC-TAA-TTCA-TTTTG--CTATTGAAAAGTGGACATCTG-CT-T-CTTCAGT-TTTTT-----CA-GC-TTA-TCGATCGAGAAACATGTTCACAAAG------CA-----CAACATGCTTAAGTA-C-TC-AGGGA--T-TTCGCC----TAGC------------AGC------TAGGCAG-GTCT-GC-ACCTG-G-TACGA-AGT-T-G-TGAAC-A--T-TCGCT---ACGTAAGTCTGCCTGCCAC-CAACAC-T-T-CGTGGGGCG--AAATGC-AATGGCG-CAGT--CTGCCTTTTGTATGTGC--CC-GGTAG--T-TCACACA-AGACACA-TC--TG-CCACCCCTGTAAATT------A-ATGCA-AGTACCAAGAAACTGC--G---TG------AA-----CCAAGATCACCA----CTG--T----CAAC--TTATAATG-ACGT-A-ACCATGTCCTTTCG-TA-CCTA-AATGCA-GT-TT-CCACCAT-TCT-TGCAAAC-GTGCGG-AAGG-C-AA---ACACCC-ACAGAG----ACTGCGAACAAGAAGCCA-TCCAGC-A-TATTT-AACTA-AGGCC-CCTCGCCAATTCAACA-TTAACT-CTAA--GCA-TACCCATTTGCAAGGTTATCAT-ATTCTAATTTT-GATTT
gi|13 : TAT--TTGATTTCTAT---CA-A--ATAGT-CC-GA-TTAATTTTG------------TTTTG-G------TTACCCCTGTT----TTA-ACC--A---TTACT-------------TCAGTTTGAAAATCTTT-AGTATGATAATTCATTTACCCGACTCGTC-TAAA-ATGTA-ACACG-AGATATATC-G-TACG---ACATT-ATTTTGATTCC--ACACCGGAgttgggtttacttccggtt
gi|15 : -AGT-CC-AAAT-AATTTTG------------TTCCC-GTCTGTTTTACCCCC-TT----TCAG-CCAG----TCATC-------------TCATGGTACAGA---TTTACCA----AATTCG-------A-CCCGTTCTA---ATTTA-GCGCG-AGTCATATC-GGTACG--AAC-TT-A-TTTAATTCATAACACCCGGA--AGCAACAAGCTACAC---A--GTTTG--TACA--TG--CCGACTA-C--gcatgattttaagctgttaccgctgactaaaggttgc
gi|21 : atAGA---TT-ACCA----AATTCG-------A-CCCGTCT-A-A-ATTTA-ACGCG-AGTCATATC-GATACG---AC-TT-A-TTCAATTCTAA-CATCTGAA--G-CAAC-AGCT--AC---A--GTTTGT-TACA--TG--CCaat
gi|5 : TTATATC-GGTACGG---C-TT-G-TTTAATTTCCAACACCGGAA---GCGA-CGGTC--ACAAGA--ATT--T-TACACTTG---GGACTAGA--TT---TGCCAAATCTA--TATTT--TACCATCCA-TCGACA-TCCA
gi|22 : AACACCGGAA--G-CAAC-AGCT--AC---A--GTTTGT-TAAA--TG--CCGACTA-CAATT---TGCCTGTTTTT--TCTCG----CCATCCA-TCGA-A-TCgcggcatttatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccagacgtccctttccgactctgacgactctcagcccagccattcggtggtgacccgctctcagccagttgtttctgccttgttgcctgcattatctccccctacccacttggagtctactgaggccatgtgtcaagccaggtagggtaatcatttcacacctgaggttaatacaccgtctttagagtcctctgtttataagcatacaagttgtcacgatcaacgtggggatcaaattctcaccaaactcaaggtccaaatccggcactgtcattgtatagacctatcgctgcttctaaaatccgcctcagatttaaataattttgagtcccagggtgatttacaaattcgcagtggcatgttgtgtatcatgcaacctaatcttaatacattcttgtctatc
gi|3 : ---TGCTTGATTAA--TCTTG--T-CAATCCA-TCGACA-TCCATC-TGCTGT------TTTTC-TACAAA-TCATCACTGATGCCATCTCCACT-AGAAGACG-CTTCGA--CGAACG-AACGTCTTAAAC-CGCCGCCGG-CAGAC-AATGGTTA-CACTTTTCCCGGGGGAAGGGGG-TCAGG-AGGAGACCACCGATTGGAG--CGCAGCCAGAGCGTTCCTTCGA---GGTTGT-----GCCTGCCCC--TTTTTACGCTTACCACTACCCAGACGTT-C-AGT-CGGACTCAGACGAC-CAA--AACACCAGCCG-T-CAGCGTGGGCCAGCTCCCGGGCCAGTC---CT-------CCTGCCTCCGTT---GCT-GG-ATTACCCCC----TACC-A--GTGGA--GT-CCACA---GAGG-CACG-TAATTTTTTCAAAGGGGGGGGGCCCAAGGGCAGGAAAAGT-A-T-ACTTCACCACCTGATT-TTAA-TATAC-A-CATTACAA-TCCCTCTGT-CTATCAGC-TA--CAAGTTGCCAC------------GATCAA------------ATTGGGAATAGCCCCAAT-AA-CTC--AG-GTCAAAATC-T------G-G-A-G---G--ACAGT--GCA-TC-AC-C-TCTAC---CTGCTTCTGAAA-TCCG-TTCGAA--T-TTAAG-ACAATATTGAGTCCCAGGGCAGACTT-ACAAGTTCG-CAATTGGC-AGA-TGTGCAT-CAC----CAAC-CTAAACC-TAATTTCACTTTTGCTCTATTGAAAAGTGGACATTTC-CT-T-CTA-GG----TTTTA--CCA-GCATTA-T-------------TGTTCACAAAG------CA-CA-TCAACTGGCTTAAGTA-CATT-AGGGA--TATTCGCC----TACC------------A-C-----T--AGCAG-GTCT-GCACCCTGTGTTAC-A-AGTATGGATGAGCAA-TA-TCGC--AGACGTAAGGCT-GCTG-CAC-C-ATATCT-T-CAATGGGTG--AAAT-CGAAT-GCG--AGTACTGGGCTTGT--ATGTGT--CC-GGTAGTTT-TC-AACACAGACACA-TC--TGCCCACCCCTGTAAG-T------A-ATTCACAGTACCA--CACCTGTTGA----A--AC--AA-----CCAA-ATTACC-AC--TTAT-TG---CAGCTATTATATTTGACGTACCGCCATGTCCGTTCCATATCCCA-AATGCA-GT-TT-AA-CCATATTT-----AACAGTGCGG-AG-G-CAAA---ACACCCGACA-AACCA-CATGC-AACATGAA-CCA-TCCA--AATTATTCAAACTATGC--C-CCTCGTCAATCGAATAGTTAACTCGCTTAAGCATT-CCCATTTGCAAGGTTATCATGAATCTAATTTT-TATTCTttcattatgccatccactagaaac
gi|10 : AGGAGAAC-CCGATCGGAAG-TGCAACCAGAACGA-CCTGCATCA--GTTG-----CACCTGCCCT--TTTTTCA-CT-ACCACtggtttactttccggtttttgtcttcaatatttagccacggggggctcgggaatcccacatctcaaaagcacaaaacaaaaacatgacaatagcaagtgaataattagtaaagaatcggggcttcaaagggtttgctggccatttaaaaattcacccctcgttaatctacaagttcccctt
gi|5 : CCCAGACGTCCC-TTT-CCGACTCTGACGACTCT--CAGCCC-AGCCA-TTCGGTGGTGACCCGCTCTCAG-CCAGTTG--TT-------TCTGCCTT-GTT---GCC-TGCATTATCTCCCCCT-ACCCAC-TTGGA--GT---CTACT-GAGGCCATG-T------GTCA---------AGCC---AGGTA-GG---GTAA-TCATTTCAC-ACCTGAGG-TTAA-TACACCGTCTTTA-GAGTCCT-CTGT-TTATAAGCATA--CAAGTTGTCACGATCAACGTGGGGATCAA------------AT---------TCTCACCAAA-CTCA-AG-GTCCAAATCCG------G-C-ACT---G--TCATT--GTA-TAGAC-C-TATC---GCTGCTTC-TAAAATCCGCCTCAGAT-T-T--AA-ATAATTTTGAGTCCCAGGGT-GATTT-ACAAATTCGC--AGTGGCATG-TTGTGTAT-CA--TG-CAAC-CTAAT-CTTAA-TACATTCTTGT-CTAT--ccttgttgtgcaatcttgttatttccactccaaccggccagaggatgtcactacgacgtgaatcgcatcagtaccacctcccctagccacgtggagctagacagcggatggcctgtgtcaagtcagccagggtgagcactttaaccctttgattaatttaaaagtttaccagtctcccatttcccggcaaacaagctgccacaatctatttgggggtcatatcccca
gi|8 : ttatatcggtacggcttgtttaatttccaacaccggaagcgacggtcacaagaattttacacttgggactagatttgccaaatctatattttaccatccatcgacatccagcggcatttatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngGATGGCCCG-T------GTCA---------AGTC---AG-CTAGG---GTGA--------AC-AC----TT-TT-------------TTACCAGTATCTCT----TACCAGCA-A--CAAACTGTCACAATCTACTTGGGGGTCAT------------AT---------CTCCAGTAAA-CTCA-AG-TTCAAAATCTA------G-G-A-G---GGTCTA-T--TTA-TTGAC-C-TCTC---GCTGCTACTCAAA-TCTTCCTCGGAT-T-T--AA-ACAGTTTCGAGTCCCAGGGT-GACTT-GCATATTCG-AAATGG--AAAATTTTG--TTTAACTA--AAT-CTAAACC-CAA---CATTTTTTCAGTATCGAAAAGTGGACATCCG-CT-T------GTCTTCTTTACTTTA-GCATCT-T-GCTGGAAAAGTATGCCCA-CAAG------Ac
gi|14 : ttggagcgagacaacgCAGTAAAGTTCAGAG-TTCAAAATTCTCCCAACGTG-A-GTTGG--TCAATCATTA-TTGAC-C-TCT-CCGGCTGCTACTCAGActtaagaattgctcaatatcgttttgcacccagc
gi|18 : TTA-AGCGTCAGA-TCTT------G-G-A-AA--G--TCATT--TTA-TGGA----TCTTCCC-CTGCTAGCCAAAT-CCATTGCAAAACT-T--GATACA---TTGACTCCCATAGC-AGTCT-GCAAATTCA--AATGG--CAGCCTGTGCACCgagactcctgacgcatttaaaccaccaaacttatgcggagttccaaggtgttgactgtgctaaattcgaaatagagaccacaaattatgttcaactaaatgctag
gi|19 : atattctcaAC-C-TCTC---GCTGCTTCTAAAAT-CCGCCTCAGA--TCT--AA-ACAATTTTGAGCCCCAGGGT-GATTT-ACAAATTCG-CAGTGG--CAGATTGTGTAT-CA--TG-CAAC-CTAAA-C-Taaaattcacct
gi|7 : TCTTGT-CTATCGAAAAATGGACATCTC-CCCT-CTT-AGT-ATTT--AC-TTA--CATCA-T-GCTTAAAAAACATGCCCACAAAGCATATCAA-ATATCAA--------AGTA-CATC-A-AGAA-TAATCACC----TAGT------------GGC-----T--AGCAG-GTCTG-CAACTTG-G-TAC-A-AGTAT-G
gi|6 : ATCTG-CT-TTCTT-AGT-TTTATTCC-CCACGCATTAAT-GCTCGAGC--CATGTTCACCGGG------CACAC-ACCACT-GCTC-AGT--CATCCA-GGGCTTATAAGCCACCCCAGCGTCACAACATCCAGCCCCTTTTTAGCCG-GT-TGCCA--CTG-G-CTC-ACAGTAT-GCTGAGC-AATTATCGC-TACACGTA-GGCTG-CTGGCCC-C--CACTT-T-CGTGGGGCGCCACAT-C-ATG-CCGCA-GT--CTGGCTTTTG--TCTGT--CCCGGTAG--TGTCA--CACCGACACAATC--TGCCCCACCCTGTA---T------ACATGCA-AGTCCCC--CCACTGCTCA---TG--CA---------CCAC-ACCTCCCCC--TTAG-TGCACC--CTCTTACTAC-CACGTCCC-CC-TGTCCTTTC--TACCT----ATGCACGG-TT-CC-CC---TTCTTGCACACAGTGCG-------C-AAGGCACACCC-CCC-A-CCACACTGC-C-C--GCAGCCACTCCAGCCA-TATTCAC-CTC-GG--C-CATCGCCA-TCAC-CATTCACATCCTCC--GCA-T-CCCCTTTGC-AGGTTATCACA--TCC--TTCTACATTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcccctttaagtaatgcaattagcagatctgctgataccaagcaatcaacccttagttgtaactattacaatgcaagtaaatcatgtcctttctaccccaaatgcaggcttatccattcttacaaacagtgcggaggcaaacaccgataattcaactgcaacaagaaaccatccagcaacattcaaactagactccttgcagatcac
gi|9 : tTG-G-TAC-A-AGCAC-GATGAGC-A-ATATCGTTTA--CGCAAGGCC--CT--CACACTTCATAC-TTCGAGGAGAG--GGGT-T-AATACTGAGCATA---GGCTACTATATGTGTTACC---TAA--T---AAAC-TA-ACATA-TCCCTGTACAGCCCGTTTGG-T------A-ATACA------------TCTTTTGACGTTG--GT--AA--------A-GTCTCCC-C--TTG--CGG-GCAG-TAATACAATGCAGGTTA-ATCATGAACGTTC--TACC--AAACTGCA-GG-TTTAG-CCAT-TCT-TGCAAACGGTGAGG-A--GGC-AA---ACACCC-ACA-ATCCA-CCTGC-A--------CCA-CTAAGCA---ATTCAAACCC-GT--C-CCTCGCCAGTT-AACA-TTAACTTTTTA--GCG-T-CACATTTGCAGGGttatttgttgtttacttccggttttcgttcttcaaccatatttaggaccacgggggggctgagcactcccacactccagcatcacccacctgccacagacgcgcgtgaattagttcaggacagtcgggcttccatcgggtgctggcaccactttcatttctccccccctcgttaaactaacccagtttctcttt
gi|16 : caAACACAGACACC-TC--TGCCCACCCCTGTAAG-TAAATTGA-ATGCA-ATTAGCG--AATTTGCTGA---TG--TC--AA------CAA-ATCACC-AC--TTAGTTG---CAACTACTACAATGCACGT-ACACCGTGTCCTTTT--TACCCTA-AATGCA-GGTTT-AG-CCAT-TTT-TGCAAACAGTGCGGTG--G-C-AA---c
gi|7 : CCCCTTTAAG-T------A-ATGCA-ATTAGCA--GATCTGCTGA---T--------A-----CCAA-GCAATCAACCCTTAGTTGT---AACTATTACAATGCAAGTAA-ATCATGTCCTTTC--TACCCCA-AATGCA-GGCTT-AT-CCAT-TCT-TACAAACAGTGCGG-A--GGC-AA---ACACCG-ATA-ATTCA-ACTGC-AACAAGAAACCA-TCCAGCAA-CATTCAAACTA-GA--CTCCTTGCAGATCA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): GAAGTCAGGCTCCACAGGGTTGCTGAACCATTTAAAAGTCCAACTCTTGTTAAATTACAAGTTTCCCCCTTGGCCTCGTTCCAATGAAATATGGCGATGTGTACCTGATACACCATCTTTCTTACCCTGAACATAACTCGGCCAACACCATTATCGACCCTAGAGTTTGTTCTATTACCTATTCCAGTATTGACCAAGATCAAGCCGCGAGTATGATTTCCCTCTCGGGAAAGAATTCACTATTAGCCAAGTCAGA
Unaligned ( gi|17 ): AAAATATTGTCGAGATATCAGATTGGCAGCTGCCAGGTTCAACTATTGGTTTAGCTATGACGAGCAATTCCGCCTCAGAATCGCTAGCCAGCCACACCTGTCATAGGGCATTATTAACCAAGAATTGTGGCTATTGTACATTTCTAATA
Unaligned ( gi|23 ): GCAGTATCGCTTACGCAAGGCTCTCACACTTCATATTTCGAGGGGAGGGGTTAATACTGAGTNATTGGTCATTG
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 11 333 22222 1 22222222222222222222222 1111 111111 2222222222 11 1111 1111 11111111 1111 111 11 1 11 1111 22 1111 111 111 11 2222222222222222222222 11 11 1 11 111 11 1 1 1 1111 22222 11 11 1 2222 111 22222222222 111 11 111 2222 111111 222222222 111 1 111111111111 22222 444444444444444444444444444444444 2222222222222222 222 11111 2 11111 11111 1 22222 11 11 22222222 2222 1111 4444444444444444444444444 11 22 222222 2222222 111 1111 22222222 1111 111111 22222222222222 222222222222222 11 11111 1111 11 1 111 111111 111 222222 11 1 1 11 33333333 111
lowQualScore : 2 88 2 555 22222 5 77 5 5 5 5 5 3 88888888888888888888888 66 5 2222 5 5 333333 5555555555 33 5 5555 5 0000 3 88888888 5 0 1111 5 5 333 5 888 2 9 99 0 66 888 33 1111 77 66 6666 000 333 77 6 6 6 8888 7777777777777777777777 1 8 44 8 11 8 88 0 33 55 111 00 8 0 3 0 5 2 8 0 8 0 8 8 1111 00000 11 5 11 5 8 8 1 1 3333 1 8 222 1 8 66666666666 0 8 444 77 6 22 6 99 6 000 4444 5 666666 222222222 1 000 3 88888 3 5 444444444444 77 99999 0 6 5 3 77 888888888888888888888888888888888 66 2 5 0 55 0 5555555555555555 5 0 66 5 1 1 444 44444 5 0 66 66 4 11111 4 777 11111 4 4 55 4 1 77 4 3 4 11111 5 1 00 6 33 1 5 888 5 5 44444444 5 5 5 1 0 1 888 5555 5 5 5 3 6 5 2222 0000000000000000000000000 5 5 99 1 66 5 5 5 5 66 11 333333 5555555 5 111 8888 5 0 0 66 0 666 77 2 88888888 0 0 77 5555 5 5 77 5 5 444444 55555555555555 1 444444444444444 5 55 77 33333 5 11 7777 33 777 5 5 1 333 5 0 777777 5 000 6 22 111111 5 6 999 7 55 1 6 1 8 6 8 11 99 8 8 0 77777777 2 777 1
lowQualScore : . .. . ... ..... . .. . . . . . . ....................... .. . .... . . ...... .......... .. . .... . .... . ........ . . .... . . ... . ... . . .. . .. ... .. .... .. .. .... ... ... .. . . . .... ...................... . . .. . .. . .. . .. .. ... .. . . . . . . . . . . . . .... ..... .. . .. . . . . . .... . . ... . . ........... . . ... .. . .. . .. . ... .... . ...... ......... . ... . ..... . . ............ .. ..... . . . . .. ................................. .. . . . .. . ................ . . .. . . . ... ..... . . .. .. . ..... . ... ..... . . .. . . .. . . . ..... . . .. . .. . . ... . . ........ . . . . . . ... .... . . . . . . .... ......................... . . .. . .. . . . . .. .. ...... ....... . ... .... . . . .. . ... .. . ........ . . .. .... . . .. . . ...... .............. . ............... . .. .. ..... . .. .... .. ... . . . ... . . ...... . ... . .. ...... . . ... . .. . . . . . . .. .. . . . ........ . ... .
lowQualScore : 5 00 5 000 00000 0 99 7 7 0 0 0 2 55555555555555555555555 99 7 1111 7 7 999999 0000000000 66 7 6666 0 6666 6 11111111 0 2 4444 7 7 888 0 000 2 6 55 0 99 888 88 0000 22 99 4444 000 222 00 7 7 7 8888 4444444444444444444444 0 0 00 0 00 0 88 0 88 22 000 88 8 0 2 0 5 5 0 8 0 8 0 0 8888 00000 00 6 88 6 0 0 0 2 6666 0 0 444 0 0 66666666666 6 0 000 77 3 33 7 22 7 222 0000 3 444444 999999999 7 000 7 99999 0 7 444444444444 11 11111 7 6 7 9 99 111111111111111111111111111111111 99 8 0 1 11 1 2222222222222222 0 2 99 0 0 1 666 11111 3 9 11 11 4 11111 4 888 11111 4 4 66 4 2 66 4 7 4 22222 0 0 00 0 11 7 7 666 7 7 99999999 7 7 7 7 9 4 999 9999 7 7 0 5 7 7 1111 7777777777777777777777777 7 7 33 4 99 0 0 0 0 44 88 666666 8888888 0 000 8888 0 8 2 99 8 000 88 2 55555555 1 7 99 0000 0 7 99 0 0 444444 99999999999999 0 222222222222222 0 55 99 77777 7 44 4444 66 777 7 7 4 999 7 1 333333 7 000 7 00 888888 2 7 000 3 88 0 7 7 2 0 0 22 00 0 0 8 22222222 5 000 0
consensus : AATTNTAAATAACAAANTCCTGTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CAAATAG-T-CC-AAATTAATTTTG------------TTC-----TG-GT--TTACCCCC-TT----TCAG-C-CTGA---TCATC----------TCA--GGT-ACAGA----TT-ACCA----AATTC--------GA-CCCGTCTNA-AATTTA-GCGCG-AGTTATATCGGTACG---AC-TT-G-TTTAATTCCCAACACCGGAAGGCAAC-AGCT--AC---A--GTTTGT-TACACTTG--CCGACTA-C--TT---TGCCTGATTTN--TCTCGTACCA-TCCA-TCGACA-TCCATC-TGCTGT------TTTTC-CACA-AA-T-CATCACT-A-TGCCAT-C--CACTAG-AA-ACG-CTTC--GATGAACG-A-GCGTCCCAAAACGCCGCCGG-CAGACAATGGTCA-CACCTTTCCCGGGGGAGGGGGGGTCAGG-AGGAGACC-CCGATCGGAGGC-GCAGCCAGAGCGT-CCTGCGGA--GGTTGC-----GCCTGCCCC--TTTTTCCTCT-ACCACTACCCAGACG-TTCCAG-TCGGACTCNGACGAC-NNTCAACAC-AGCCG-C-CGGCGGTGGCCAGCTCCCGG-CCAGTCG--CC-------CCTGCCTC-GTT---GCC-GGTATTACCTCCCCCCTACCCAC-GTGGA--G-T-CCACA-CT-GAGGGCACGTG------TCAA---------GCC---AGGCAGGGGTGAGTA--CTTCAC-ACC---TGAT---T-TTAA-TATAC-G-CATTACGAGTCCCTCTGT-TTACCAGCATA--CAAGTTGTCAC-A-TC-A--C-T-GGGGATC-AA---------TAT--CCCCANTAAA-CTCA-AGGTCAAAATCTT------G-GA-G---G-TCAGT--TCA-TNGACCTCTCC--GCTGCTTCTN----AAAT-CCGCCT--CGGA--TTTAA-AC-----AATTT-T---GAGTCCCAGGG---C-GACT-TAC-AAATTCGC-AA-TGGGCA-GATTGTGCATC-AT--G--CAAC-CTAAACCTAATT-CATTTTTGC-CTATCGAAAAGTGGACATCTGCT-T-C-TT-AGT-TTTTTTAC-CCA-GCATCA-T-GCTCGAGAAACATGTCCACAAAG--CA-NNTCAAC-TG-CTTAAGTACATC-AGGGAT-ATTCGCC----TAGC------------AGC------TTA-GC-AG-GTCTGGCAACC--TG-GT-AC-A-AGTATG-ACGAGCAATTATCGCTTA-A-CGTAAGGCTGGCT-G-CA-CC-N-CAC-N-T-TCGTGGGGCG--AAAT-C-AAT-GCCGAGAGTACCTGGCTTTTGTATGTGT--CCGGTAGT-T--CAAACACAGACAC-ATC--TGCCCACCCCTGTAAG-TA-A------TGCA-AGT---ACCA--AATCTGCTGATGTCGA---------CCAAG-TCACCAAC--TTA-GT-GCA-ACTATTACAATGCACGT-A-CACCATGTCCTTTC--TACCCTA-AA-TGCA-GG-TT-ANCCATTCT-TGCAAACAGTGCGG-A--G-C-AA---ACACCC-ACAANCCAACTGC-AACA-GAAGCCA-TCCAGCAA-TATTCAAACTA--GNC-CCTCGCCAATC-AACA-TTAAC-TC-CTT-AGCA-T-CCCATTTGCAAGGTTATCATG-A----TCTA-A-TTTTTATTTT
Reference ( family-2916 ) : AATTGTAAATAACAAAGT---GTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CAAATAG-T-CC-AAATTAATTTTG------------TTC-----TG-GT--TTACCCCC-TT----TCAG-C-CTGA---TCATC----------TCA--GGT-ACAGA----TT-ACCA----AATTC--------GA-CCCGTCTTA-AATTTA-GCGCG-AGTTATATCGGTACG---AC-TT-G-TTTAATTCCCAACACCGGAAGGCAAC-AGCT--AC---A--GTTTGT-TACACTTG--CCGACTA-C--TT---TGCCTGATTTA--TCTCGTACCA-TCCA-TCGACA-TCCATC-TGCTGT------TTTTC-CGCA-AA-T-CATCACT-A-CGCCAT-C--CACTAG-AA-ACG-CTTC--GACGAACG-A-GCGTCCCGAAACGCCGCCGG-CAGACAATGGTCA-CACCTTTCCCGGGGGAAGGGGGGTCAGG-AGGAGACC-CCGATCGGAGGC-GCAGCCAGAGCGT-CCTGCGGA--GGTTGC-----GCCTGCCCC--TTTTTCCTCT-ACCACTACCCAGACG-TTCCAG-TCNGACTCTGACGAC-CNGCAACNC-AGCCG-C-CGGCGGTGGCCNGCTCCCGG-CCAGTCG--CC-------CCTGCCTC-GTT---GCC-GGCATTACCTCCCCCNTACCCAC-GTGGA--G-T-CCACA-CT-GAGGGCACGTG------TCAA---------GCC---AGGCAGGGGTGAGTA--CTTCAC-ACC---TGAT---T-TTAA-TATAC-G-CATTACGAGTCCCTCTGT-TTATCAGCATA--CAAGTTGTCAC-A-TC-A--C-T-GGGGATC-AATTGGGG---CAT--CCCCANTAAA-CTCA-AGGTCAAAATCTT------G-GA-G---G-TCAGT--TCA-TNGACCTCTCC--GCTGCTTCTC----AAATTCCGCCT--CGGA--TTTAA-AC-----AATTT-T---GAGTCCCAGGG---C-GACT-TAC-AAATTCGC-AA-TGGGCA-GATTGTGCATC-AT--G--CAAC-CTAAACCTAATN-CATTTTTGC-CTATCGAAAAGTGGACATCTGCT-T-C-TT-AGT-TTTTTTAC-CCA-GCATCA-T-GCTCGAAAAACATGTCCACAAAG--NA-ANTCAAC-TG-CTTAAGTACATC-AGGGAT-ATTCGCC----TAGC------------AGC------TTA-GC-AG-GTCTGGCAACC--TG-GT-AC-A-AGTATG-ATGAGCAATTATCGCTTA-A-CGTAAGGCTGGCT-G-CA-CC-N-CAT-N-T-TCGTGGGGCG--AAAT-C-AAT-ACCGAAAGTACCTGGCTTTTGTATGTGT--CCGGTAGT-T--CAAACACAGACAC-ATC--TGCCCACCCCTGTAAG-TA-A------TGCA-AGT---ACCA--AATCTGCTGATGNNAA---------CCAAG-TCACCAAC--TTA-GT-GCA-ACTATTACAATGCACGT-A-CACCATGTCCTTTC--TACCCCA-AA-TGCA-GG-TT-ANCCATTCT-TGCAAACAGTGCGG-A--G-C-AA---ACACCC-ACAANCCAACTGC-AACAAGAAGCCA-TCCAGCAA-TATTCAAACTA--GNC-CCTCGCCAATCGAACA-TTAAC-TC-CTT-NGCA-T-CCCATTTGCAAGGTTATCACG-A----TCTA-A-TTTTNATTTT
gi|1 : AATTCTAAATAA--AATTCCTGTTT--TG-AAT-ATAATCAGGATTAT--TTGATGTTTATATTCAAA-AG-T-CC-AAATTAATTTTG------------TTC-----CG-GT--TTACCCCC-TT----TCAGGC-CTGA---TCATC----------TCA--GGTTACAGA----TT-ACCA----AATTC--------GAACCCGTCTTACAATTTATGCGCG-AGTCATATCG-TACGGGAAC-TT-A-TTTAATTCTAAACACCGGAAGGCAACCAGCT--AC---A--GTTTGT-TACA--TG--CCGACTA-C--TT---TGCCTGATTTT--TCTCGT-TCA-TCCA-TCGACA-TCCATC-TGCTGTGTTTTATTTTC-CACA-AAAT-CTTCACT-A-TGC-ATGC--CACTAGGAA-ACG-CTTC--G-TGAACGGA-ACGTTTCCAAACGTCGCCGA-CAGCCA-TGGTCA-CACCTT-CCCGGGGAAGGGGGGGTTAGGGAGGAGACC-CCGATCGGAGGTTGCGGCCATAGCGT-CCTGCGGAAGGGTTGTTGTTTGCCTGCCCC--TTTTCCCTCT-ACCACTACCCAAACG-TTTCAG-TCGGACCCAGACGACTCAACAACAC-AGCCG-C-CGGCGGTGGCCAGCTCCCGA-CCAGTCG--CC-------CCGGCCTC-GTTTGGGCC-GGTATTACCTCCCCCTTACCCAC-GTGGGCGG-TTCCCCA-CTTGAGGACACGTT------TCAT---------GCC---AGGCAAGGGTGA-TA--CTTCAC-ACC---TGAT---T-TTAA-TATACCA-CATTACGAGTCCTTCTGT-TTATCAGCACA--CAAGTTGTCAC----------------GATC-AA----------AT--CCCCAATAAA-CTCA-AGGTCAAAATCTT------G-GA-G---G-CCAGT--TCA-TTGACCTCTTCCGGCTGCTTCTT----AAATTCCACCT--CGGA--TT-AA-AC-----AATTT-T---GAG-CCCAAGG---C-GACT-TAC-AAATTCGCCAA-CGGGTAAGATTGTGCATCCATTTG--CAAC-CTAAAC-TAATT-CATTTTTGC-CTAT--GAAAGTGGACATCTGCT-T-C-TT-AGT-TTTTTTAC-CCA-GCATTA-T-GCTCGAGAAACATGTTCATCGAG--AA-ATTCAAC--G-CTTA-GTACATC-AGG-AT-ATTCGCC----TAGC------------AGC------TTAAGC-AGTGTCTGGCAACC--TG-GT-AC-A-AGTATG-ATGAGCA-TT-TCGCCTA-AACGTAAGGCTGGCT-G-CA-CC-AACAC-A-C-GCGTGGGGCG--AAAT-C-AAT--CCGAAAGTACTTGGCTTTTA-ATGTGT--CCGGTAGT-T--CAAACACAGACAC-ATC--TGCCCACCCCTGTAAA-TA-A------TGCA-AGT---ACCA--AACCTGTTGATGGAAA---------CCAAA-TCACCAAC--TTATGC-CCA-ACTATTACAATGCACGTCA-CACCATGTCCTTTC--TACCCTAGAA-TGCA-GG-TT-ACCCATTTTCTGCAAACAGTGCGG-A--G-C-AA---ACACCC-ACAAGCCAACTGC-AAC--GAAGCCA-TCCAGCAA-TATTCAAACTA--GGC-CCTCGCCAATCAAACATTTAAC-TC-CTT-TGCA-T-CCCATTTGCAAGGTTATCATG-A----T-TC-C-TTTTTATTTT
gi|10 : -AGGAGAAC-CCGATCGGAAGT-GCAACCAGAACGA-CCTGCATC--AGTTGC-----ACCTGCCCT--TTTTTCA-CT-ACCAC
gi|10 : C-AGTACCACCTCCCC--TAGCCAC-GTGGA--GCT-AGACAGCG-GATGGCCTGTG------TCAA---------GTC---AGCCA-GGGTGAGCA--CTTTA--ACCCTTTGATTAAT-TTAA----AA-G-T-TTACCAGTCTC-CCAT-TTCCCGGCAAA--CAAGCTGCCACAA-TCTAT-T-T-GGGGGTC-A----------TAT--CCCCAccttgttgtgcaatcttgttatttccactccaaccggccagaggatgtcactacgacgtgaatcgcatcagtaccacctcccctagccacgtggagctagacagcggatggcctgtgtcaagtcagccagggtgagcactttaaccctttgattaatttaaaagtttaccagtctcccatttcccggcaaacaagctgccacaatctatttgggggtcatatcccca
gi|12 : aggagaacccgatcggaagtgcaaccagaacgacctgcatcagttgcacctgcccttttttcactaccacccttgttgtgcaatcttgttatttccactccaaccggccagaggatgtcactacgacgtgaatcgcatTCAAGATTATATTTGAT-TTCATAT-CAAATAG-T-CC-AAATTAATTTTG------------G-A-----TG-GTGTTTATTTCA-TT----TAAA-TTCTTA---TTGTCATTGTGAGAATCATCAGT-ACAGA----TT-CTCA----ATTCT--------GA-CATAT-TCA-GATTTA-GCCAG-AGTTATATCGGTACA---AC-TT-G-ATTAATTTCCAACACTGGAA-GCGGC-AGTC--AT---AAGGCTT-T-TACACTTGGACCAACCA-C--TT---
gi|13 : TAT--TTGAT-TTC-TAT-CAAATAG-T-CC-GA-TTAATTTTG------------TTT-----TG-GT--T-ACCCCTGTT----TTAA-C-C--A---TTACT----------TCA--GTT-TGAAAATCTTT-AGTATGATAATTCATTTACCCGA-CTCGTCTAA-AATGTA-ACACG-AGATATATC-GTACG---ACATT-ATTTTGATTCC--ACACCGGA
gi|14 : CAGTAAAGTTCAGAGTTCAAAATTCTCCCAACGTGA-GTTGG-TCAATCATTA-TTGACCTCTCCG-GCTGCTACTCAGAGAGACT---CCTGACGCA--TTTAA-ACCACCAAACTTATGCGGAGTTCCAAGGTGTT-GACTGTGCTAAATTCGA-AA-TAG--A-GACCACAAATT-AT--GTTCAA--CTAAAgcatgattttaagctgttaccgctgactaaaggttgc
gi|15 : ATAG-T-CC-AAAT-AATTTTG------------TTCCCGTCTG-TT--TTACCCCC-TT----TCAG-C-CAG----TCATC----------TCAT-GGT-ACAGAT---TT-ACCA----AATTC--------GA-CCCGTTCT--AATTTA-GCGCG-AGTCATATCGGTACGA--AC-TT-A-TTTAATTCATAACACCCGGAAGCAACAAGCTACAC---A--GTTTG--TACA--TG--CCGACTA-C--tgctag
gi|16 : AACACAGACAC-CTC--TGCCCACCCCTGTAAG-TA-AATTGAATGCA-ATT---AGCG--AATTTGCTGATGTCAA---------C-AAA-TCACCA-C--TTA-GTTGCA-ACTACTACAATGCACGT-A-CACCGTGTCCTTTT--TACCCTA-AA-TGCA-GGTTT-AGCCATTTT-TGCAAACAGTGCGGTG--G-C-AA---aat
gi|17 : GAGAT-ATCAGAT----TGGC------------AGC------T---GCCAG-GTT---CAACTATTG-GT-TT-A-GCTATG-ACGAGCAATT-CCGCCTC-A--GAATCGCTAGC----CAGCC-A-CAC-C-TGTCATAGGGC-----AT-T-ATTAACCAAGAAT-TGTGGCTATTGTACATTT--C
gi|18 : aaaatattgtcAT--TCTCATTAAG-C------GTCAGA-TCTT------G-GA-AA--G-TCATT--TTA-TGGATCT-TCC--CCTGCTAGCC----AAAT-CCATTG--CAAAACTTGAT-AC-----A---T-T---GACTCCCATAG---C-AGTC-TGC-AAATTCA--AA-T-GGCA-GCCTGTGCACC-Ataata
gi|19 : atACCTCTC---GCTGCTTCTA----AAAT-CCGCCT--CAGA--TCTAA-AC-----AATTT-T---GAGCCCCAGGG---T-GATT-TAC-AAATTCGC-AG-T-GGCA-GATTGTGTATC-AT--G--CAAC-CTAAACaaattcacct
gi|2 : TAT--TTGAG-TTTATAT-CGATTAGGTGCC-AAAT-AATTTTG------------TTC-----TG-TC--TTACCGCT-TA----TCAG-C-CTGA---TCATC----------TCA--GG--ACAGA----TTTACCA----A-TTC--------GA-CCCGTCTAA-AATTTA-GCGCGGAGTTATATCGGTCCG---AC-TTTG-CTTAATTCT-GACACCGGAAG--AAC-A-CT--AC---A--GTT-GTATACA--TG--CCGACTA-CA-TT---TGCCTGATTTTCTTCTCGGGTCAATCCAGTCGACAATCCATCATGCTGT------TTTTCACACA-AA-TTCATCACT-A-TGCCAT-C--CACTAG-AA-ACGGCTTC--GATGAACG-AAGCGTTCCGAAACGC-GCCAAACAGACAATGGTCAACACCTTTCCCGGGGGAAGGGGTGTTAGG-AG-AG-CC-CCGTGCGG-GGC-GCAGCCAGAGCGT-CCTGCGGA--GGTTGT-----GCATG-CCC--TTTTCCCTC--ACTCTTACCCAGACGTTTCCAGTTCGGACTC-GACGAC-AGTCAACAC-AGCTG-C-CGGCGGTGGCCA-CTCCCGA-CCAGTCG--CC-------CCGGCCTC-GCT---GCCAGGTATTACCTCCCCGCTAGCCACTGTGGC--G-T-CCACA----GAGGACACGTT------TTCA---------G-C---AGGCAGAGGTGAGTA--CTT--C-ACC---TGAT---TATTAATTATAC---CATTACGAGT-CCTCGGTCTTATCAGCATAATC-AGTTGTCAC----------------GATCGAATTGGGGTCATAT--CCCC--TAAA-CTCA-AGGTC-AAATCGT--------GA-G---G-GCAGT--TCAGTCGACGCGTCT--GCTGC-TCTT----TAATCCCA-CT--CGGA--TTTAA-AC-----AATTT-T---G-GTCCCAGGC---C---TT-CAC-AAATTCGC-AATTGGTTA-GATTGTG-ATC-AT--GC-CAACTCTAAACCTAATT-CA-TTTTG--CTATTGAAAAGTGGACATCTGCT-T-C-TTCAGT-TTTTT-----CA-GC-TTA-TCGATCGAGAAACATGTTCACAAAG--CA----CAACATG-CTTAAGTAC-TC-AGGGAT--TTCGCC----TAGC------------AGC------TAG-GC-AG-GTCT-GC-ACC--TG-GT-ACGA-AGT-TG--TGAAC-AT--TCGCT---A-CGTAAGTCTGCCT-GCCA-CCAA-CA--C-T-TCGTGGGGCG--AAATGC-AAT-GGCG-CAGT--CTGCCTTTTGTATGTGC--CCGGTAGT-T--CACACA-AGACAC-ATC--TG-CCACCCCTGTAAATTA-A------TGCA-AGT---ACCAAGAAACTGC----GTGAA---------CCAAGATCACC-AC--T---GT--CA-AC--TTATAATG-ACGT-A--ACCATGTCCTTTCG-TA-CCTA-AA-TGCA-GT-TTCCACCATTCT-TGCAAAC-GTGCGG-AAGG-C-AA---ACACCC-ACAGA--GACTGCGAACAAGAAGCCA-TCCAGC-A-TATTT-AACTAAGGCC-CCTCGCCAATTCAACA-TTAAC-T--CTA-AGCA-TACCCATTTGCAAGGTTATCATA-T----TCTA-A-TTTTGATTTt
gi|20 : GATTAT--TTGAT-TTTATAT-CAAATAG-T-CC-AAATTAATTTTG------------TTC-----TGCGT--TTACCCCC-TT----TCAG-C-CTGA---TCATC----------TCA--AGT-ACAGA----TT-ACCA----AATTC--------GA-CCCGTCgttgggtttacttccggtt
gi|21 : AGA----TT-ACCA----AATTC--------GA-CCCGTCT-A-AATTTA-ACGCG-AGTCATATCGATACG---AC-TT-A-TTCAATT-CTAACATCTGAA-GCAAC-AGCT--AC---A--GTTTGT-TACA--TG--CC
gi|22 : AACACCGGAAG-CAAC-AGCT--AC---A--GTTTGT-TAAA--TG--CCGACTA-CAATT---TGCCTGTTTTT--TCTCG--CCA-TCCA-TCGA------ATC-T-----------------------------TCATT-A-TGCCAT-C--CACTAG-AA-AC
gi|23 : TATCGCTT--A-CGCAAGGCT--CTCA-CA-CT-T-CATAT-T-TCGAGGGGAG--GGGT-T-AAT-ACTGA
gi|24 : gcagGGTTAT--TTGAT-TTTATAT-CATATAG-T-CCAAAATTGATTTTG------------TTT-----TGTGT--TTgtnattggtcattg
gi|3 : ---TGCTTGATTAA--TCTTGT-CAA-TCCA-TCGACA-TCCATC-TGCTGT------TTTTC-TACA-AA-T-CATCACTGA-TGCCAT-CTCCACTAG-AAGACG-CTTC--GACGAACG-A-ACGTCTTAAACCGCCGCCGG-CAGACAATGGTTA-CACTTTTCCCGGGGGAAGGGGG-TCAGG-AGGAGACCACCGATTGGAG-C-GCAGCCAGAGCGTTCCTTCG-A--GGTTGT-----GCCTGCCCC--TTTTTACGCTTACCACTACCCAGACG-TTC-AG-TCGGACTCAGACGAC-CAA-AACACCAGCCG-T-CAGCGTGGGCCAGCTCCCGGGCCAGTC---CT-------CCTGCCTCCGTT---GCT-GG-ATTACC----CCCTACC-A--GTGGA--G-T-CCACA----GAGG-CACGTAATTTTTTCAAAGGGGGGGGGCCCAAGGGCAGGAA-AAGTATACTTCACCACC---TGAT---T-TTAA-TATAC-A-CATTACAA-TCCCTCTGT-CTATCAGC-TA--CAAGTTGCCAC----------------GATC-AAATTGGG---AATAGCCCCAATAA--CTCA--GGTCAAAATCT-------G-GA-G---G-ACAGT--GCA-TC-ACCTCTAC---CTGCTTCTG----AAAT-CCGT-T--CGAA--TTTAAGAC-----AATAT-T---GAGTCCCAGGG---CAGACT-TAC-AAGTTCGC-AA-TTGGCA-GAT-GTGCATC-AC-----CAAC-CTAAACCTAATTTCACTTTTGCTCTATTGAAAAGTGGACATTTCCT-T-C-TA-GGT-TTT---AC-C-A-GCATTA-T-------------TGTTCACAAAG--CA-CATCAAC-TGGCTTAAGTACATT-AGGGAT-ATTCGCC----TACC------------A--------CTA-GC-AG-GTCTG-CACCC--TGTGTTAC-A-AGTATGGATGAGCAAT-ATCGC--AGA-CGTAAGGCTG-CT-G-CA-CC-A-TAT-C-T-TCAATGGGTG--AAAT-CGAAT-GC---GAGTACTGGGCTT--GTATGTGT--CCGGTAGT-TTTCAA-CACAGACAC-ATC--TGCCCACCCCTGTAAG-TA-A------TTCACAGT---ACCA--CACCTGTTGA-AACAA---------CCAAA-TTACC-AC--TTA-TT-GCA-GCTATTATATTTGACGT-ACCGCCATGTCCGTTCCATATCCCA-AA-TGCA-GT-TT-AACCATATT-T---AACAGTGCGG-AG-G-CAAA---ACACCCGACAAACCACATGC-AACATGAA-CCA-TCCA--AATTATTCAAACTAT-GCC-CCTCGTCAATCGAATAGTTAAC-TCGCTTAAGCATT-CCCATTTGCAAGGTTATCATGAA----TCTA-A-TTTTTATTCT
gi|4 : AATTGTAAATAACAAAGT---GTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CAAATAG-T-AC-AAATTAATTTTGGAGGGTGTTTACTTC--------AT--CTATCTAC-TTACGGTCAG-C-C-GAGAATCATC---------------GGT-ATGGA----TC-CTCA----ATTTT--------GA-CACATTTTA---TTTA-GACAG-GGTTATATCGGTACG---AC-TT-G-TTTAATTTCCAACAACGGAAG-CAAC-AGTC--AC---ACGGCTT-T-TACACTTG--G-GACTA-A--ATATATGCCAAATCTA--TTTCCTACCA-TCCA-TCGTCA-TCCGGC-GG-TAT------TTATC-CTCGTAA-T-CACTACC-AATGTCAC-C--CACCAA-AA---G-TTCCAAGATGAATG-A-GCGTCC-AAAACACAGTCGG-CAGACGATGGACA-CACCTT-CCTGGGGAAGGGGGGGTCAGG-AGGAGACC-CCGACCGGAGGC-GCAGTCACAGCGC-CCTGCAGA--GGTTGC-----GCCTGCCCCCTTTTTTCCTCC-ACC------CAGACG-GTCCAG-TCCTACTTTGACGAC-GCTCAACCC-AGCCCTC-CAGCGGTGGTCCGCGCTCAG-CCAGTCGTTCCTCATCTTCCTGCCTT-GTT---GCC-TGCTTTACCTCCCCCA-ACCCAC-GTGGA--G-T---GTA-CT-GAGGGCACGTG------TCAA---------GCC---AGGCAGTG-TGAGTA--TTTCAC-ACC----G-----T-TTAA-TATACTG-CATTACGAGTCC-TCTGT-TTACCAGCATA--CAAGTTGTCACGA-TC-AACT-T-GGGGACC-A----------TAT--CCCCACCAAA-CGCA-AGGTCAAAATCTA------G-GAAG---G-TCAGT--TCA-TAGACCTCTC---GCTGCTTCTA----AAAT-CCGCCT--CGGA--TTTAA-AA-----CATTT-T---GAGTCCCAGGG---T-GACT-TAC-AAATCTGC-AA-TGG-CA-GATTGTGCATC-AT--T--CATC-CTAAACCTAATA-CAATTTTGC-CTATCGAAAAGTGGACATCTACC-T-CCTT-AGT-CTTT--AC-T-A-GCATCA-T-GTTTGAAAAACATGTCCACAAAG--CA-CAGCAAA-TA-CTTAAGTATTTT-CGGGAA-ATTCGCC----TAGC------------AGC------TT--GT-AG-GTCTG-CAACT--TG-GT-AC-A-TGTATG-ACGAGCAAT-ATCGCTTA---CGTAAGGCTG-CC-A-CA-CC-C-CAT-ACT-TCGTGGGGTG--AACT-C-AAT-ACTGAA--TAC-TGGCTTTTGTATGTGT--CCGGTAGT-T--CAA-CACAGACAC-CCC--TGCCCCCTCCCGCTAG-TA-A------------------------ATCTGCTGATGTTGAGTAATCACCCCAAG-TCACCAAtggtttactttccggtttttgtcttcaatatttagccacggggggctcgggaatcccacatctcaaaagcacaaaacaaaaacatgacaatagcaagtgaataattagtaaagaatcggggcttcaaagggtttgctggccatttaaaaattcacccctcgttaatctacaagttcccctt
gi|5 : accatgctcttcggtgTTATATCGGTACG---GC-TT-G-TTTAATTTCCAACACCGGAA-GCGAC-GGTC--ACAAGA--ATT--T-TACACTTG---GGACTAGA--TT---TGCCAAATCTA--TATTTTACCA-TCCA-TCGACA-TCCAt
gi|5 : CCCAGACG-TCCCTT-TCCGACTCTGACGAC-TCTCAGCCC-AGCCA-TTCGGTGGTGACCCGCTCTCAG-CCAGTTG--TT-------TCTGCCTT-GTT---GCC-TGCATTATCTCCCCC-TACCCAC-TTGGA--G-T-CTAC---T-GAGGCCATGTG------TCAA---------GCC---AGGTAGGG-TAATCA--TTTCAC-ACC---TGAG---G-TTAA-TACACCGTCTTTA-GAGTCC-TCTGT-TTATAAGCATA--CAAGTTGTCACGA-TC-AA-CGT-GGGGATC-AA----------AT--TCTCACCAAA-CTCA-AGGTCCAAATCCG------G-CA-CT--G-TCATT--GTA-TAGACCTATC---GCTGCTTCTA----AAAT-CCGCCT--CAGA--TTTAA-AT-----AATTT-T---GAGTCCCAGGG---T-GATT-TAC-AAATTCGC-AG-T-GGCA-TGTTGTGTATC-AT--G--CAAC-CTAATCTTAATA-CATTCTTGT-CTATCgcggcatttatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccagacgtccctttccgactctgacgactctcagcccagccattcggtggtgacccgctctcagccagttgtttctgccttgttgcctgcattatctccccctacccacttggagtctactgaggccatgtgtcaagccaggtagggtaatcatttcacacctgaggttaatacaccgtctttagagtcctctgtttataagcatacaagttgtcacgatcaacgtggggatcaaattctcaccaaactcaaggtccaaatccggcactgtcattgtatagacctatcgctgcttctaaaatccgcctcagatttaaataattttgagtcccagggtgatttacaaattcgcagtggcatgttgtgtatcatgcaacctaatcttaatacattcttgtctatc
gi|6 : ttatatcggtacggcttgtttaatttccaacaccggaagcgacggtcacaagaattttacacttgggactagatttgccaaatctatattttaccatccatcgacatccagcggcatttatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngATCTGCT-TTC-TT-AGT-TTTATTCC-CCACGCATTAAT-GCTCGAGC--CATGTTCACCGGG--CACACACCAC-TG-CTCA-GT-CATCCAGGGCTTATAAGCCACCCCAGCGTCACAACATCCAGCCCCTTTTTA-GC-CG-GT-TGCCA--C--TG-GC-TC-ACAGTATG-CTGAGCAATTATCGCTAC-A-CGT-AGGCT-GCT-G-GC-CC-C-CAC-T-T-TCGTGGGGCGCCACAT-C--AT-GCCG-CAGT--CTGGCTTTTGTCTGT-C--CCGGTAGTGT--C--ACACCGACACAATC--TGCCCCACCCTGTA---TACA------TGCA-AGTCCCCCCA-----CTGCTCATGC--A---------CCACA-CCTCCCCC--TTA-GT-GCACCCTCTTACTAC-CACGT---CCCCCTGTCCTTTC--TACCT----A-TGCACGG-TT--CCCCTTCT-TGCACACAGTGC------G-C-AAGGCACACCC-CCCACCACACTGC---C-CGCAGCCACTCCAGCCA-TATTC-ACCTC--GGC-CATCGCC-ATC-ACCA-TTCACATC-CTC-CGCA-T-CCCCTTTGC-AGGTTATCAC--ATCCTTCTACATTTTTTATTT
gi|7 : tTCTTGT-CTATCGAAAAATGGACATCTCCCCT-C-TT-AGT-ATTT--AC-TTA--CATCA-T-GCTTAAAAAACATGCCCACAAAG--CA-TATCAAA-TA-TCAAAGTACATC-AAGAAT-AATCACC----TAGT------------GGC-------TA-GC-AG-GTCT-GCAACT--TG-GT-AC-A-AGTATG-gttgtttacttccggttttcgttcttcaaccatatttaggaccacgggggggctgagcactcccacactccagcatcacccacctgccacagacgcgcgtgaattagttcaggacagtcgggcttccatcgggtgctggcaccactttcatttctccccccctcgttaaactaacccagtttctcttt
gi|7 : CCCCTTTAAG-TA-A------TGCA-ATT---AGCA--GATCTGCTGAT----A---------CCAAG-CAATCAACCCTTA-GTTGTA-ACTATTACAATGCAAGT-A-AATCATGTCCTTTC--TACCCCA-AA-TGCA-GGCTT-ATCCATTCT-TACAAACAGTGCGG-A--GGC-AA---ACACCG-ATAATTCAACTGC-AACAAGAAACCA-TCCAGCAA-CATTCAAACTA--GACTCCTTGCAGATCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcccctttaagtaatgcaattagcagatctgctgataccaagcaatcaacccttagttgtaactattacaatgcaagtaaatcatgtcctttctaccccaaatgcaggcttatccattcttacaaacagtgcggaggcaaacaccgataattcaactgcaacaagaaaccatccagcaacattcaaactagactccttgcagatcac
gi|8 : tcttgtctatcgaaaaatggacatctcccctcttagtatttacttacatcatgcttaaaaaacatgcccacaaagcatatcaaatatcaaagtacatcaagaataatcacctagtggctagcaggtctgcaacttggtacaagtatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntA-CG-GATGGCCCGTG------TCAA---------GTC---AGCTAGGG-TGA---------AC-AC-------T---T-TT-------------TTACCAGTATCTCT----TACCAGCA-A--CAAACTGTCAC-AATCTA--C-TTGGGGGTC-A----------TAT--CTCCAGTAAA-CTCA-AGTTCAAAATCTA------G-GA-G---GGTCTAT--TTA-TTGACCTCTC---GCTGCTACTC----AAAT-CTTCCT--CGGA--TTTAA-AC-----AGTTT-C---GAGTCCCAGGG---T-GACT-TGC-ATATTCGA-AA-TGGA-A-AATTTTGTTTA-AC--T--AAAT-CTAAACCCAA---CATTTTTTCAGTATCGAAAAGTGGACATCCGCT-T-------GTCTTCTTTACTTTA-GCATCT-T-GCTGGAAAAGTATGCCCACAAGACTTA-AG--AAT-TG-CTCAAac
gi|9 : ttggagcgagaca--TG-GT-AC-A-AGCACG-ATGAGCAAT-ATCGTTTA---CGCAAGGCC--CTCA-CA-CT-T-CAT-ACT-TCGAGGAGAG--GGGT-T-AAT-ACTGAGCATA---GGCTACTATATGTGTTACC--TAAT-----AAAC-TA-ACAT-ATCCCTGTACAGCCCGTTTGG-TA-A------TACA---------------TCTTTTGACGTTGG---------TAAAG-TCTCCC-C--TTGCGG-GCA-G-TAATACAATGCAGGT-T-AATCATGAACGTTC--TACC--A-AACTGCA-GG-TTTAGCCATTCT-TGCAAACGGTGAGG-A--GGC-AA---ACACCC-ACAATCCACCTGC-A--------CCA-CTAAGCA---ATTCAAACCC--GTC-CCTCGCCAGTT-AACA-TTAAC-TT-TTT-AGCG-T-CACATTTGCAGGGtatcgttttgcacccagc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GAAGTCAGGCTCCACAGGGTTGCTGAACCATTTAAAAGTCCAACTCTTGTTAAATTACAAGTTTCCCCCTTGGCCTCGTTCCAATGAAATATGGCGATGTGTACCTGATACACCATCTTTCTTACCCTGAACATAACTCGGCCAACACCATTATCGACCCTAGAGTTTGTTCTATTACCTATTCCAGTATTGACCAAGATCAAGCCGCGAGTATGATTTCCCTCTCGGGAAAGAATTCACTATTAGCCAAGTCAGA
Alignments
lowQualScore : 11 222 22222 1 22222222222222222222222 1111 111111 2222222222 11 1111 1111 11111111 111 11 1 11 1111 22 1111 111 111 11 222222 11111111111 11 1 11 111 1 1 1 1111 22222 11 11 1111 111 22222222222 111 111 2222 111111 222222222 111 1 111111111111 22222 66666666666666 111 2222222222222222 1111 11111 11111 1 22222 11 11 22222222 1111 1111 4444444444444444444444444 11 22 222222 2222222 111 222 222 1111 111111 22222222222222 222222222222222 11 11111 1111 11 1 1 2222 111 222222 11 1 1 11 3333333 111
lowQualScore : 1 88 1 000 22222 5 77 5 5 5 5 5 3 88888888888888888888888 66 5 2222 5 5 333333 5555555555 33 5 5555 5 0000 3 88888888 5 4 7777 5 5 333 5 888 2 9 99 0 66 888 33 1111 77 66 6666 000 000 77 6 6 6 8888 333333 1 22222222222 1 8 8 8 11 8 88 0 33 3 111 77 8 0 3 0 5 2 8 0 8 0 8 8 1111 00000 11 5 11 5 8 8 8 6666 0 8 222 0 8 66666666666 0 8 444 77 4 2 5 6 99 6 000 4444 5 666666 222222222 1 000 3 88888 3 5 444444444444 77 99999 0 6 5 3 77 99999999999999 5 111 2 5 0 55 0 5555555555555555 5 0 66 5 1 1 9999 66 1 4 1 66 66 4 11111 4 777 11111 4 4 55 4 1 77 4 3 4 11111 5 1 00 6 33 1 5 888 5 5 44444444 5 5 5 1 0 1 9999 5 5 5 3 6 5 2222 0000000000000000000000000 5 5 99 1 66 5 5 5 5 777 11 333333 0 5555555 5 111 000 5 0 0 66 1 666 5 2 777 777 0 0 77 5555 99 5 77 5 5 444444 55555555555555 1 999999999999999 5 55 77 33333 5 11 3333 0 33 555 5 5 1 1 1 5 0 1111 5 5 000 6 22 333333 1 6 3 6 7 55 1 6 1 6 3 6 8 11 99 8 8 0 5555555 2 777
lowQualScore : . .. . ... ..... . .. . . . . . . ....................... .. . .... . . ...... .......... .. . .... . .... . ........ . . .... . . ... . ... . . .. . .. ... .. .... .. .. .... ... ... .. . . . .... ...... . ........... . . . . .. . .. . .. . ... .. . . . . . . . . . . . . .... ..... .. . .. . . . . .... . . ... . . ........... . . ... .. . . . . .. . ... .... . ...... ......... . ... . ..... . . ............ .. ..... . . . . .. .............. . ... . . . .. . ................ . . .. . . . .... .. . . . .. .. . ..... . ... ..... . . .. . . .. . . . ..... . . .. . .. . . ... . . ........ . . . . . . .... . . . . . . .... ......................... . . .. . .. . . . . ... .. ...... . ....... . ... ... . . . .. . ... . . ... ... . . .. .... .. . .. . . ...... .............. . ............... . .. .. ..... . .. .... . .. ... . . . . . . . .... . . ... . .. ...... . . . . . .. . . . . . . . .. .. . . . ....... . ...
lowQualScore : 0 00 0 555 00000 0 99 7 7 0 0 0 2 55555555555555555555555 99 7 1111 7 7 999999 0000000000 66 7 6666 0 6666 6 11111111 0 5 1111 7 7 888 0 000 2 6 55 0 99 888 88 0000 22 99 4444 000 222 00 7 7 7 8888 000000 0 44444444444 0 0 0 0 00 0 88 0 88 2 000 22 8 0 2 0 5 5 0 8 0 8 0 0 8888 00000 00 6 88 6 0 0 8 0000 6 0 444 6 0 66666666666 6 0 000 77 2 5 2 7 22 7 222 0000 3 444444 999999999 7 000 7 99999 0 7 444444444444 11 11111 7 6 7 9 99 77777777777777 7 555 8 0 1 11 1 2222222222222222 0 2 99 0 0 1 1111 11 0 4 9 11 11 4 11111 4 888 11111 4 4 66 4 2 66 4 7 4 22222 0 0 33 0 11 7 7 666 7 7 99999999 7 7 7 7 4 4 0000 7 7 0 5 7 7 1111 7777777777777777777777777 7 7 33 4 99 0 0 0 0 999 88 666666 4 8888888 0 000 999 0 8 2 99 0 000 4 2 999 444 1 7 99 0000 99 7 99 0 0 444444 99999999999999 0 111111111111111 0 55 99 77777 7 44 9999 1 66 999 7 7 4 4 0 7 1 6666 7 7 000 7 00 777777 5 7 2 7 3 88 0 7 7 7 3 0 0 22 00 0 0 8 2222222 5 000
consensus : AATTNTAAATAACAAANTCCTGTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CAAATAG-T-CC-AAATTAATTTTG------------TTC-----TG-GT--TTACCCCC-TT----TCAG-C-CTGA---TCATC----------TCA--GGT-ACAGA----TT-ACCA----AATTC--------GA-CCCGTCTNA-AATTTA-GCGCG-AGTTATATCGGTACG---AC-TT-G-TTTAATTCCCAACACCGGAAGGCAAC-AGCT--AC---A--GTTTGT-TACACTTG--CCGACTA-C--TT---TGCCTGATTTN--TCTCGTACCA-TCCA-TCGACA-TCCATC-TGCTGT------TTTTC-CACA-AA-T-CATCACT-A-TGCCAT-C--CACTAG-AA-ACG-CTTC--GATGAACG-A-GCGTCCCAAAACGCCGCCGG-CAGACAATGGTCA-CACCTTTCCCGGGGGAGGGGGGGTCAGG-AGGAGACC-CCGATCGGAGGC-GCAGCCAGAGCGT-CCTGCGGA--GGTTGC-----GCCTGCCCC--TTTTTCCTCT-ACCACTACCCAGACG-TTCCAG-TCGGACTCNGACGACNCT-CAACAC-AGCCG-C-CGGCGGTGGCCAGCTCCCGG-CCAGTCG--CC-------CCTGCCTC-GTT---GCC-GGTATTACCTCCCCCCTACCCAC-GTGGA--G-T-CCACA-CT-GAGGGCACGTG------TCAA---------GCC---AGGCAGGGGTGAGTA--CTTCAC-ACC---TGAT---T-TTAA-TATAC-G-CATTACGAGTCCCTCTGT-TTACCAGCATA--CAAGTTGTCACGA-TC--AA-T-T-GGGGATCAATATCCCCANTAAA-CTCA-AGGTCAAAATCTT------G-GA-G---G-TCAGT--TCA-TNGACCTCTCC--GCTGCT--TCTNAAAT-CCGCCT--CGGA--TTTAA-AC-----AATTT-T---GAGTCCCAGGG---C-GACT-TAC-AAATTCGC-AA-TGGGCA-GATTGTGCATC-AT--G--CAAC-CTAAACCTAATT-CATTTTTGC-CTATCGAAAAGTGGACATCTGCT-T-C-TT-AGT-TTTTTTAC-CCA-GCATCA-T-GCTCGAGAAACATGTCCACAAAGCACAN-CAAC-TG-CTTAAGTACATC-AGGGAT-ATTCGCC----TAGC------------AGC------TTA-GC-AG-GTCTGGCAACC--TG-GT-AC-A-AGTATG-ACGAGCAATTATCGCTTA-A-CGTAAGGCTG-CT-G-CA-CC-N-CAC-N-T-TCGTGGGGCG--AAAT-C-AATGCCGAGAGTACCTGGCTTTTGTATGTGT--CCGGTAGT-T--CAAACACAGACACA-TC--TGCCCACCCCTGTAAG-TA-A------TGCA-AGTACC---A--AATCTGCTGATGTCGA---------CCAAG-TCACCAAC--TTA-GT-GCAAC-TATTACAATGCACGT-A-CACCATGTCCTTTC--TACCCTA-AA-TGCA-GG-TT-ANCCATTCT-TGCAAACAGTGCGG-A--G-C-AA---ACACCC-ACAANCCAACTGC-AAC-AGAAGCCA-TCCAGCAA-TATTCAAACTA--GNC-CCTCGCCAA-TC-AACA-TTAAC-TC-CTT-AGCA-T-CCCATTTGCAAGGTTATCATG-A----TCTA-A-TTTTTATTTT
Reference ( family-2916 ) : AATTNTAAATAACAAANTCCTGTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CAAATAG-T-CC-AAATTAATTTTG------------TTC-----TG-GT--TTACCCCC-TT----TCAG-C-CTGA---TCATC----------TCA--GGT-ACAGA----TT-ACCA----AATTC--------GA-CCCGTCTNA-AATTTA-GCGCG-AGTTATATCGGTACG---AC-TT-G-TTTAATTCCCAACACCGGAAGGCAAC-AGCT--AC---A--GTTTGT-TACACTTG--CCGACTA-C--TT---TGCCTGATTTN--TCTCGTACCA-TCCA-TCGACA-TCCATC-TGCTGT------TTTTC-CACA-AA-T-CATCACT-A-TGCCAT-C--CACTAG-AA-ACG-CTTC--GATGAACG-A-GCGTCCCAAAACGCCGCCGG-CAGACAATGGTCA-CACCTTTCCCGGGGGAGGGGGGGTCAGG-AGGAGACC-CCGATCGGAGGC-GCAGCCAGAGCGT-CCTGCGGA--GGTTGC-----GCCTGCCCC--TTTTTCCTCT-ACCACTACCCAGACG-TTCCAG-TCGGACTCNGACGACNNT-CAACAC-AGCCG-C-CGGCGGTGGCCAGCTCCCGG-CCAGTCG--CC-------CCTGCCTC-GTT---GCC-GGTATTACCTCCCCCCTACCCAC-GTGGA--G-T-CCACA-CT-GAGGGCACGTG------TCAA---------GCC---AGGCAGGGGTGAGTA--CTTCAC-ACC---TGAT---T-TTAA-TATAC-G-CATTACGAGTCCCTCTGT-TTACCAGCATA--CAAGTTGTCAC-A-TC--A--C-T-GGGGATCAATATCCCCANTAAA-CTCA-AGGTCAAAATCTT------G-GA-G---G-TCAGT--TCA-TNGACCTCTCC--GCTGCT--TCTNAAAT-CCGCCT--CGGA--TTTAA-AC-----AATTT-T---GAGTCCCAGGG---C-GACT-TAC-AAATTCGC-AA-TGGGCA-GATTGTGCATC-AT--G--CAAC-CTAAACCTAATT-CATTTTTGC-CTATCGAAAAGTGGACATCTGCT-T-C-TT-AGT-TTTTTTAC-CCA-GCATCA-T-GCTCGAGAAACATGTCCACAAAGCANNT-CAAC-TG-CTTAAGTACATC-AGGGAT-ATTCGCC----TAGC------------AGC------TTA-GC-AG-GTCTGGCAACC--TG-GT-AC-A-AGTATG-ACGAGCAATTATCGCTTA-A-CGTAAGGCTGGCT-G-CA-CC-N-CAC-N-T-TCGTGGGGCG--AAAT-C-AATGCCGAGAGTACCTGGCTTTTGTATGTGT--CCGGTAGT-T--CAAACACAGACACA-TC--TGCCCACCCCTGTAAG-TA-A------TGCA-AGTACC---A--AATCTGCTGATGTCGA---------CCAAG-TCACCAAC--TTA-GT-GCAAC-TATTACAATGCACGT-A-CACCATGTCCTTTC--TACCCTA-AA-TGCA-GG-TT-ANCCATTCT-TGCAAACAGTGCGG-A--G-C-AA---ACACCC-ACAANCCAACTGC-AAC-AGAAGCCA-TCCAGCAA-TATTCAAACTA--GNC-CCTCGCCAA-TC-AACA-TTAAC-TC-CTT-AGCA-T-CCCATTTGCAAGGTTATCATG-A----TCTA-A-TTTTTATTTT
gi|1 : AATTCTAAATAA--AATTCCTGTTT--TG-AAT-ATAATCAGGATTAT--TTGATGTTTATATTCAAA-AG-T-CC-AAATTAATTTTG------------TTC-----CG-GT--TTACCCCC-TT----TCAGGC-CTGA---TCATC----------TCA--GGTTACAGA----TT-ACCA----AATTC--------GAACCCGTCTTACAATTTATGCGCG-AGTCATATCG-TACGGGAAC-TT-A-TTTAATTCTAAACACCGGAAGGCAACCAGCT--AC---A--GTTTGT-TACA--TG--CCGACTA-C--TT---TGCCTGATTTT--TCTCGT-TCA-TCCA-TCGACA-TCCATC-TGCTGTGTTTTATTTTC-CACA-AAAT-CTTCACT-A-TGC-ATGC--CACTAGGAA-ACG-CTTC--G-TGAACGGA-ACGTTTCCAAACGTCGCCGA-CAGCCA-TGGTCA-CACCTT-CCCGGGGAAGGGGGGGTTAGGGAGGAGACC-CCGATCGGAGGTTGCGGCCATAGCGT-CCTGCGGAAGGGTTGTTGTTTGCCTGCCCC--TTTTCCCTCT-ACCACTACCCAAACG-TTTCAG-TCGGACCCAGACGACTCAACAACAC-AGCCG-C-CGGCGGTGGCCAGCTCCCGA-CCAGTCG--CC-------CCGGCCTC-GTTTGGGCC-GGTATTACCTCCCCCTTACCCAC-GTGGGCGG-TTCCCCA-CTTGAGGACACGTT------TCAT---------GCC---AGGCAAGGGTGA-TA--CTTCAC-ACC---TGAT---T-TTAA-TATACCA-CATTACGAGTCCTTCTGT-TTATCAGCACA--CAAGTTGTCAC-----------------GATCAA-ATCCCCAATAAA-CTCA-AGGTCAAAATCTT------G-GA-G---G-CCAGT--TCA-TTGACCTCTTCCGGCTGCT--TCTTAAATTCCACCT--CGGA--TT-AA-AC-----AATTT-T---GAG-CCCAAGG---C-GACT-TAC-AAATTCGCCAA-CGGGTAAGATTGTGCATCCATTTG--CAAC-CTAAAC-TAATT-CATTTTTGC-CTAT--GAAAGTGGACATCTGCT-T-C-TT-AGT-TTTTTTAC-CCA-GCATTA-T-GCTCGAGAAACATGTTCATCGAGAAATT-CAAC--G-CTTA-GTACATC-AGG-AT-ATTCGCC----TAGC------------AGC------TTAAGC-AGTGTCTGGCAACC--TG-GT-AC-A-AGTATG-ATGAGCA-TT-TCGCCTA-AACGTAAGGCTGGCT-G-CA-CC-AACAC-A-C-GCGTGGGGCG--AAAT-C-AAT-CCGAAAGTACTTGGCTTTTA-ATGTGT--CCGGTAGT-T--CAAACACAGACACA-TC--TGCCCACCCCTGTAAA-TA-A------TGCA-AGTACC---A--AACCTGTTGATGGAAA---------CCAAA-TCACCAAC--TTATGC-CCAAC-TATTACAATGCACGTCA-CACCATGTCCTTTC--TACCCTAGAA-TGCA-GG-TT-ACCCATTTTCTGCAAACAGTGCGG-A--G-C-AA---ACACCC-ACAAGCCAACTGC-AAC--GAAGCCA-TCCAGCAA-TATTCAAACTA--GGC-CCTCGCCAA-TCAAACATTTAAC-TC-CTT-TGCA-T-CCCATTTGCAAGGTTATCATG-A----T-TC-C-TTTTTATTTT
gi|10 : -AGGAGAAC-CCGATCGGAAGT-GCAACCAGAACGA-CCTGCATC--AGTTGC-----ACCTGCCCT--TTTTTCA-CT-ACCAC
gi|10 : C-AGTACCACCTC--CCCTAGCCAC-GTGGA--GCT-AGACAGCG-GATGGCCTGTG------TCAA---------GTC---AGCCA-GGGTGAGCA--CTTTA--ACCCTTTGATTAAT-TTAA----AA-G-T-TTACCAGTCTC-CCAT-TTCCCGGCAAA--CAAGCTGCCACAA-TCT-AT-T-T-GGGGGTC-ATATCCCCAccttgttgtgcaatcttgttatttccactccaaccggccagaggatgtcactacgacgtgaatcgcatcagtaccacctcccctagccacgtggagctagacagcggatggcctgtgtcaagtcagccagggtgagcactttaaccctttgattaatttaaaagtttaccagtctcccatttcccggcaaacaagctgccacaatctatttgggggtcatatcccca
gi|12 : aggagaacccgatcggaagtgcaaccagaacgacctgcatcagttgcacctgcccttttttcactaccacccttgttgtgcaatcttgttatttccactccaaccggccagaggatgtcactacgacgtgaatcgcatTCAAGATTATATTTGAT-TTCATAT-CAAATAG-T-CC-AAATTAATTTTG------------G-A-----TG-GTGTTTATTTCA-TT----TAAA-TTCTTA---TTGTCATTGTGAGAATCATCAGT-ACAGA----TT-CTCA----ATTCT--------GA-CATAT-TCA-GATTTA-GCCAG-AGTTATATCGGTACA---AC-TT-G-ATTAATTTCCAACACTGGAA-GCGGC-AGTC--AT---AAGGCTT-T-TACACTTGGACCAACCA-C--TT---
gi|13 : TAT--TTGAT-TTC-TAT-CAAATAG-T-CC-GA-TTAATTTTG------------TTT-----TG-GT--T-ACCCCTGTT----TTAA-C-C--A---TTACT----------TCA--GTT-TGAAAATCTTT-AGTATGATAATTCATTTACCCGA-CTCGTCTAA-AATGTA-ACACG-AGATATATC-GTACG---ACATT-ATTTTGATTCC--ACACCGGA
gi|14 : CAGTAAAGTTCAGAGTTCAAAATTCTCCCAACGTGA-GTTGG-TCAATCATTA-TTGACCTCTCCG-GCTGCTACTCAGAGAG-ACTCCTGACGCA--TTTAA-ACCACCAAACTTATGCGGAGTTCCAAGGTGTT-GACTGTGCTAAATTCGA-AA-TAG--A-GACCACAAATT-AT--GTTCAA--CTAAAgcatgattttaagctgttaccgctgactaaaggttgc
gi|15 : ATAG-T-CC-AAAT-AATTTTG------------TTCCCGTCTG-TT--TTACCCCC-TT----TCAG-C-CAG----TCATC----------TCAT-GGT-ACAGAT---TT-ACCA----AATTC--------GA-CCCGT-TCT-AATTTA-GCGCG-AGTCATATCGGTACGA--AC-TT-A-TTTAATTCATAACACCCGGAAGCAACAAGCTACAC---A--GTTTG--TACA--TG--CCGACTA-C--tgctag
gi|16 : AACACAGACACC-TC--TGCCCACCCCTGTAAG-TA-AATTGAATGCA-ATTAGC---G--AATTTGCTGATGTCAA---------C-AAA-TCACCA-C--TTA-GTTGCAAC-TACTACAATGCACGT-A-CACCGTGTCCTTTT--TACCCTA-AA-TGCA-GGTTT-AGCCATTTT-TGCAAACAGTGCGGTG--G-C-AA---aat
gi|17 : GAGAT-ATCAGAT----TGGC------------AGC------T---GCCAG-GTT---CAACTATTG-GT-TT-A-GCTATG-ACGAGCAATT-CCGCCTC-A--GAATCGCTAGC----CAGCC-A-CAC-C-TGTCATAGGGCA--TTAT-T-AA--CCAAGAAT-TGTGGCTATTGTACATTT--C
gi|18 : aaaatattgtcATATTCTCATTAAG-C------GTCAGA-TCTT------G-GA-AA--G-TCATT--TTA-TGGATCT-TCC--CCTGCT--AGCCAAAT-CCATTG--CAAAACTTGAT-AC-----A---T-T---GACTCCCATAG---C-AGTC-TGC-AAATTCA--AA-T-GGCA-GCCTGTGCACC-Ataata
gi|19 : ACCTCTC---GCTGCT--TCTAAAAT-CCGCCT--CAGA--TCTAA-AC-----AATTT-T---GAGCCCCAGGG---T-GATT-TAC-AAATTCGC-AG-T-GGCA-GATTGTGTATC-AT--G--CAAC-CTAAACaaattcacct
gi|2 : TAT--TTGAG-TTTATAT-CGATTAGGTGCC-AAAT-AATTTTG------------TTC-----TG-TC--TTACCGCT-TA----TCAG-C-CTGA---TCATC----------TCA--GG--ACAGA----TTTACCA----A-TTC--------GA-CCCGTCTAA-AATTTA-GCGCGGAGTTATATCGGTCCG---AC-TTTG-CTTAATTCT-GACACCGGAAG--AAC-A-CT--AC---A--GTT-GTATACA--TG--CCGACTA-CA-TT---TGCCTGATTTTCTTCTCGGGTCAATCCAGTCGACAATCCATCATGCTGT------TTTTCACACA-AA-TTCATCACT-A-TGCCAT-C--CACTAG-AA-ACGGCTTC--GATGAACG-AAGCGTTCCGAAACGC-GCCAAACAGACAATGGTCAACACCTTTCCCGGGGGAAGGGGTGTTAGG-AG-AG-CC-CCGTGCGG-GGC-GCAGCCAGAGCGT-CCTGCGGA--GGTTGT-----GCATG-CCC--TTTTCCCTC--ACTCTTACCCAGACGTTTCCAGTTCGGACTC-GACGACAGT-CAACAC-AGCTG-C-CGGCGGTGGCCA-CTCCCGA-CCAGTCG--CC-------CCGGCCTC-GCT---GCCAGGTATTACCTCCCCGCTAGCCACTGTGGC--G-T-CCACA----GAGGACACGTT------TTCA---------G-C---AGGCAGAGGTGAGTA--CTT--C-ACC---TGAT---TATTAATTATAC---CATTACGAGT-CCTCGGTCTTATCAGCATAATC-AGTTGTCACGA-TCGAA--T-T-GGGG-TC-ATATCCCC--TAAA-CTCA-AGGTC-AAATCGT--------GA-G---G-GCAGT--TCAGTCGACGCGTCT--GCTGC---TCTTTAAT-CCCACT--CGGA--TTTAA-AC-----AATTT-T---G-GTCCCAGGC---C---TT-CAC-AAATTCGC-AATTGGTTA-GATTGTG-ATC-AT--GC-CAACTCTAAACCTAATT-CA-TTTTG--CTATTGAAAAGTGGACATCTGCT-T-C-TTCAGT-TTTTT-----CA-GC-TTA-TCGATCGAGAAACATGTTCACAAAGCA----CAACATG-CTTAAGTAC-TC-AGGGAT--TTCGCC----TAGC------------AGC------TAG-GC-AG-GTCT-GC-ACC--TG-GT-ACGA-AGT-TG--TGAAC-AT--TCGCT---A-CGTAAGTCTGCCT-GCCA-CCAA-CAC---T-TCGTGGGGCG--AAATGC-AATGGCG-CAGT--CTGCCTTTTGTATGTGC--CCGGTAGT-T--CACACA-AGACACA-TC--TG-CCACCCCTGTAAATTA-A------TGCA-AGTACC---AAGAAACTGC----GTGAA---------CCAAGATCACC-AC--T---GT--CAAC---TTATAATG-ACGT-A--ACCATGTCCTTTCG-TA-CCTA-AA-TGCA-GT-TTCCACCATTCT-TGCAAAC-GTGCGG-AAGG-C-AA---ACACCC-ACAGA--GACTGCGAACAAGAAGCCA-TCCAGC-A-TATTT-AACTAAGGCC-CCTCGCCAATTC-AACA-TTAAC-T--CTA-AGCA-TACCCATTTGCAAGGTTATCATA-T----TCTA-A-TTTTGATTTt
gi|20 : GATTAT--TTGAT-TTTATAT-CAAATAG-T-CC-AAATTAATTTTG------------TTC-----TGCGT--TTACCCCC-TT----TCAG-C-CTGA---TCATC----------TCA--AGT-ACAGA----TT-ACCA----AATTC--------GA-CCCGTCgttgggtttacttccggtt
gi|21 : AGA----TT-ACCA----AATTC--------GA-CCCGTCT-A-AATTTA-ACGCG-AGTCATATCGATACG---AC-TT-A-TTCAATT-CTAACATCTGAA-GCAAC-AGCT--AC---A--GTTTGT-TACA--TG--CC
gi|22 : AACACCGGAAG-CAAC-AGCT--AC---A--GTTTGT-TAAA--TG--CCGACTA-CAATT---TGCCTGTTTTT--TCTCG--CCA-TCCA-TCGA------ATC-T-----------------------------TCATT-A-TGCCAT-C--CACTAG-AA-AC
gi|23 : TATCGCTT--A-CGCAAGGCT--CTCA-CA-CT-T-CATAT-T-TCGAGGGGAG--GGGT-T-AATACTGAG
gi|24 : gcagGGTTAT--TTGAT-TTTATAT-CATATAG-T-CCAAAATTGATTTTG------------TTT-----TGTGT--TTtnattggtcattg
gi|3 : ---TGCTTGATTAA--TCTTGT-CAA-TCCA-TCGACA-TCCATC-TGCTGT------TTTTC-TACA-AA-T-CATCACTGA-TGCCAT-CTCCACTAG-AAGACG-CTTC--GACGAACG-A-ACGTCTTAAACCGCCGCCGG-CAGACAATGGTTA-CACTTTTCCCGGGGGAAGGGGG-TCAGG-AGGAGACCACCGATTGGAG-C-GCAGCCAGAGCGTTCCTTCG-A--GGTTGT-----GCCTGCCCC--TTTTTACGCTTACCACTACCCAGACG-TTC-AG-TCGGACTCAGACGACCA--AAACACCAGCCG-T-CAGCGTGGGCCAGCTCCCGGGCCAGTC---CT-------CCTGCCTCCGTT---GCT-GG-ATTACC----CCCTACC-A--GTGGA--G-T-CCACA----GAGG-CACGTAATTTTTTCAAAGGGGGGGGGCCCAAGGGCAGGAA-AAGTATACTTCACCACC---TGAT---T-TTAA-TATAC-A-CATTACAA-TCCCTCTGT-CTATCAGC-TA--CAAGTTGCCACGA-TC--AAAT-T-GGG----AATAGCCCCAATAA--CTCA--GGTCAAAATCT-------G-GA-G---G-ACAGT--GCA-TC-ACCTCTAC---CTGCT--TCTGAAAT-CCGT-T--CGAA--TTTAAGAC-----AATAT-T---GAGTCCCAGGG---CAGACT-TAC-AAGTTCGC-AA-TTGGCA-GAT-GTGCATC-AC-----CAAC-CTAAACCTAATTTCACTTTTGCTCTATTGAAAAGTGGACATTTCCT-T-C-TA-GGT-TTT---AC-C-A-GCATTA-T-------------TGTTCACAAAGCACAT-CAAC-TGGCTTAAGTACATT-AGGGAT-ATTCGCC----TACC------------A--------CTA-GC-AG-GTCTG-CACCC--TGTGTTAC-A-AGTATGGATGAGCAAT-ATCGC--AGA-CGTAAGGCTG-CT-G-CA-CC-A-TAT-C-T-TCAATGGGTG--AAAT-CGAATGC---GAGTACTGGGCTT--GTATGTGT--CCGGTAGT-TTTCAA-CACAGACACA-TC--TGCCCACCCCTGTAAG-TA-A------TTCACAGTACC---A--CACCTGTTGA-AACAA---------CCAAA-TTACC-AC--TTA-TT-GCAGC-TATTATATTTGACGT-ACCGCCATGTCCGTTCCATATCCCA-AA-TGCA-GT-TT-AACCATATT-T---AACAGTGCGG-AG-G-CAAA---ACACCCGACAAACCACATGC-AAC-ATGAACCA-TCCA--AATTATTCAAACTAT-GCC-CCTCGTCAA-TCGAATAGTTAAC-TCGCTTAAGCATT-CCCATTTGCAAGGTTATCATGAA----TCTA-A-TTTTTATTCT
gi|4 : AATTGTAAATAACAAAGT---GTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CAAATAG-T-AC-AAATTAATTTTGGAGGGTGTTTACTTC--------AT--CTATCTAC-TTACGGTCAG-C-C-GAGAATCATC---------------GGT-ATGGA----TC-CTCA----ATTTT--------GA-CACATTTTA---TTTA-GACAG-GGTTATATCGGTACG---AC-TT-G-TTTAATTTCCAACAACGGAAG-CAAC-AGTC--AC---ACGGCTT-T-TACACTTG--G-GACTA-A--ATATATGCCAAATCTA--TTTCCTACCA-TCCA-TCGTCA-TCCGGC-GG-TAT------TTATC-CTCGTAA-T-CACTACC-AATGTCAC-C--CACCAA-AA---G-TTCCAAGATGAATG-A-GCGTCC-AAAACACAGTCGG-CAGACGATGGACA-CACCTT-CCTGGGGAAGGGGGGGTCAGG-AGGAGACC-CCGACCGGAGGC-GCAGTCACAGCGC-CCTGCAGA--GGTTGC-----GCCTGCCCCCTTTTTTCCTCC-ACC------CAGACG-GTCCAG-TCCTACTTTGACGACGCT-CAACCC-AGCCCTC-CAGCGGTGGTCCGCGCTCAG-CCAGTCGTTCCTCATCTTCCTGCCTT-GTT---GCC-TGCTTTACCTCCCCCA-ACCCAC-GTGGA--G-T---GTA-CT-GAGGGCACGTG------TCAA---------GCC---AGGCAGTG-TGAGTA--TTTCAC-ACC----G-----T-TTAA-TATACTG-CATTACGAGTCC-TCTGT-TTACCAGCATA--CAAGTTGTCACGA-TC--AACT-T-GGGGACCA-TATCCCCACCAAA-CGCA-AGGTCAAAATCTA------G-GAAG---G-TCAGT--TCA-TAGACCTCTC---GCTGCT--TCTAAAAT-CCGCCT--CGGA--TTTAA-AA-----CATTT-T---GAGTCCCAGGG---T-GACT-TAC-AAATCTGC-AA-TGG-CA-GATTGTGCATC-AT--T--CATC-CTAAACCTAATA-CAATTTTGC-CTATCGAAAAGTGGACATCTACC-T-CCTT-AGT-CTTT--AC-T-A-GCATCA-T-GTTTGAAAAACATGTCCACAAAGCACAG-CAAA-TA-CTTAAGTATTTT-CGGGAA-ATTCGCC----TAGC------------AGC------TT--GT-AG-GTCTG-CAACT--TG-GT-AC-A-TGTATG-ACGAGCAAT-ATCGCTTA---CGTAAGGCTG-CC-A-CA-CC-C-CAT-ACT-TCGTGGGGTG--AACT-C-AATACTGAA--TAC-TGGCTTTTGTATGTGT--CCGGTAGT-T--CAA-CACAGACACC-CC--TGCCCCCTCCCGCTAG-TA-A------------------------ATCTGCTGATGTTGAGTAATCACCCCAAG-TCACCAAtggtttactttccggtttttgtcttcaatatttagccacggggggctcgggaatcccacatctcaaaagcacaaaacaaaaacatgacaatagcaagtgaataattagtaaagaatcggggcttcaaagggtttgctggccatttaaaaattcacccctcgttaatctacaagttcccctt
gi|5 : accatgctcttcggtgTTATATCGGTACG---GC-TT-G-TTTAATTTCCAACACCGGAA-GCGAC-GGTC--ACAAGA--ATT--T-TACACTTG---GGACTAGA--TT---TGCCAAATCTA--TATTTTACCA-TCCA-TCGACA-TCCAt
gi|5 : CCCAGACG-TCCCTT-TCCGACTCTGACGACTCT-CAGCCC-AGCCA-TTCGGTGGTGACCCGCTCTCAG-CCAGTTG--TT-------TCTGCCTT-GTT---GCC-TGCATTATCTCCCCC-TACCCAC-TTGGA--G-T-CTAC---T-GAGGCCATGTG------TCAA---------GCC---AGGTAGGG-TAATCA--TTTCAC-ACC---TGAG---G-TTAA-TACACCGTCTTTA-GAGTCC-TCTGT-TTATAAGCATA--CAAGTTGTCACGA-TC--AA-CGT-GGGGATCAA-ATTCTCACCAAA-CTCA-AGGTCCAAATCCG------G-CACT---G-TCATT--GTA-TAGACCTAT-C--GCTGCT--TCTAAAAT-CCGCCT--CAGA--TTTAA-AT-----AATTT-T---GAGTCCCAGGG---T-GATT-TAC-AAATTCGC-AG-T-GGCA-TGTTGTGTATC-AT--G--CAAC-CTAATCTTAATA-CATTCTTGT-CTATCgcggcatttatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccagacgtccctttccgactctgacgactctcagcccagccattcggtggtgacccgctctcagccagttgtttctgccttgttgcctgcattatctccccctacccacttggagtctactgaggccatgtgtcaagccaggtagggtaatcatttcacacctgaggttaatacaccgtctttagagtcctctgtttataagcatacaagttgtcacgatcaacgtggggatcaaattctcaccaaactcaaggtccaaatccggcactgtcattgtatagacctatcgctgcttctaaaatccgcctcagatttaaataattttgagtcccagggtgatttacaaattcgcagtggcatgttgtgtatcatgcaacctaatcttaatacattcttgtctatc
gi|6 : ttatatcggtacggcttgtttaatttccaacaccggaagcgacggtcacaagaattttacacttgggactagatttgccaaatctatattttaccatccatcgacatccagcggcatttatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngATCTGCT-TTC-TT-AGT-TTTATTCC-CCACGCATTAAT-GCTCGAGC--CATGTTCACCGGGCACACACCAC-TG-CTCA-GT-CATCCAGGGCTTATAAGCCACCCCAGCGTCACAACATCCAGCCCCTTTTTA-GC-CG-GT-TGCCA--C--TG-GC-TC-ACAGTATG-CTGAGCAATTATCGCTAC-A-CGTA-GGCTG-CT-G-GC-CC-C-CAC-T-T-TCGTGGGGCGCCACAT-C-A-TGCCGC-AGT--CTGGCTTTTGTCTGT-C--CCGGTAGTGT--CA--CACCGACACAATC--TGCCCCACCCTGTA---TACA------TGCA-AGTCCCCCCA-----CTGCTCATGC--A---------CCACA-CCTCCCCC--TTA-GT-GCACCCTCTTACTAC-CACGT-C-CCCC-TGTCCTTTC--TACCT----A-TGCACGG-TT-CCCC-TTCT-TGCACACAGTGC------G-C-AAGGCACACCC-CCCACCACACTGC---C-CGCAGCCACTCCAGCCA-TATTC-ACCTC--GGC-CATCGCC-A-TC-ACCA-TTCACATC-CTC-CGCA-T-CCCCTTTGC-AGGTTATCAC--ATCCTTCTACATTTTTTATTT
gi|7 : tTCTTGT-CTATCGAAAAATGGACATCTCCCCT-C-TT-AGT-ATTT--AC-TTA--CATCA-T-GCTTAAAAAACATGCCCACAAAGCATAT-CAAA-TA-TCAAAGTACATC-AAGAAT-AATCACC----TAGT------------GGC-------TA-GC-AG-GTCT-GCAACT--TG-GT-AC-A-AGTATG-gttgtttacttccggttttcgttcttcaaccatatttaggaccacgggggggctgagcactcccacactccagcatcacccacctgccacagacgcgcgtgaattagttcaggacagtcgggcttccatcgggtgctggcaccactttcatttctccccccctcgttaaactaacccagtttctcttt
gi|7 : CCCCTTTAAG-TA-A------TGCA-ATTAGC---A--GATCTGCTGAT----A---------CCAAG-CAATCAACCCTTA-GTTGTAAC-TATTACAATGCAAGT-A-AATCATGTCCTTTC--TACCCCA-AA-TGCA-GGCTT-ATCCATTCT-TACAAACAGTGCGG-AG-G-C-AA---ACACCG-ATAATTCAACTGC-AACAAGAAACCA-TCCAGCAA-CATTCAAACTA--GACTCCTTGCAGA-TC-Annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcccctttaagtaatgcaattagcagatctgctgataccaagcaatcaacccttagttgtaactattacaatgcaagtaaatcatgtcctttctaccccaaatgcaggcttatccattcttacaaacagtgcggaggcaaacaccgataattcaactgcaacaagaaaccatccagcaacattcaaactagactccttgcagatcac
gi|8 : tcttgtctatcgaaaaatggacatctcccctcttagtatttacttacatcatgcttaaaaaacatgcccacaaagcatatcaaatatcaaagtacatcaagaataatcacctagtggctagcaggtctgcaacttggtacaagtatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntA-CG-GATGGCCCGTG------TCAA---------GTC---AGCTAGGG-TGA---------AC-AC-------T---T-TT-------------TTACCAGTATCTCT----TACCAGCA-A--CAAACTGTCAC-AATCT-A--C-TTGGGGGTCA-TATCTCCAGTAAA-CTCA-AGTTCAAAATCTA------G-GA-G---GGTCTAT--TTA-TTGACCTCTC---GCTGCT--ACTCAAAT-CTTCCT--CGGA--TTTAA-AC-----AGTTT-C---GAGTCCCAGGG---T-GACT-TGC-ATATTCGA-AA-TGGA-A-AATTTTGTTTA-AC--T--AAAT-CTAAACCCAA---CATTTTTTCAGTATCGAAAAGTGGACATCCGCT-T-------GTCTTCTTTACTTTA-GCATCT-T-GCTGGAAAAGTATGCCCACAAGACTTAA-GAAT-TG-CTCAAc
gi|9 : ttggagcgagaca--TG-GT-AC-A-AGCACG-ATGAGCAAT-ATCGTTTA---CGCAAGGCC--CTCA-CA-CT-T-CAT-ACT-TCGAGGAGAG--GGGT-T-AATACTGAGCATA---GGCTACTATATGTGTTACC--TAAT-----AAAC-TA-ACATA-TCCCTGTACAGCCCGTTTGG-TA-A------TACA---------------TCTTTTGACGTTGG---------TAAAG-TCTCCC-C--TTGCGG-GCAG--TAATACAATGCAGGT-T-AATCATGAACGTTC--TACC--A-AACTGCA-GG-TTTAGCCATTCT-TGCAAACGGTGAGG-A--GGC-AA---ACACCC-ACAATCCACCTGC-A--------CCA-CTAAGCAA-T--TCAAACCC--GTC-CCTCGCCAG-TT-AACA-TTAAC-TT-TTT-AGCG-T-CACATTTGCAGGGtatcgttttgcacccagc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GAAGTCAGGCTCCACAGGGTTGCTGAACCATTTAAAAGTCCAACTCTTGTTAAATTACAAGTTTCCCCCTTGGCCTCGTTCCAATGAAATATGGCGATGTGTACCTGATACACCATCTTTCTTACCCTGAACATAACTCGGCCAACACCATTATCGACCCTAGAGTTTGTTCTATTACCTATTCCAGTATTGACCAAGATCAAGCCGCGAGTATGATTTCCCTCTCGGGAAAGAATTCACTATTAGCCAAGTCAGA
Alignments
lowQualScore : 11 222 22222 1 22222222222222222222222 1111 111111 2222222222 11 1111 1111 11111111 111 11 1 11 1111 22 1111 111 111 11 222222 11111111111 11 1 11 111 1 1 1 1111 22222 11 11 1111 111 22222222222 111 11 111 2222 111111 222222222 111 2 1111 111 2222222 11111111 2222222 2222222222222222 1111 11111 11111 1 22222 11 11 22222222 1111 4444444444444444444444444 11 22 222222 1111111 11 222 222 1111 111111 22222222222222 222222222222222 11 11111 1111 11 1 111 2222 111 222222 11 1 1 11 3333333 111
lowQualScore : 1 88 1 000 22222 5 77 5 5 5 5 5 3 88888888888888888888888 66 5 2222 5 5 333333 5555555555 33 5 5555 5 0000 3 88888888 5 4 7777 5 5 333 5 888 2 9 99 0 66 888 33 1111 77 66 6666 000 000 77 6 6 6 8888 333333 1 22222222222 1 8 8 8 11 8 88 0 33 3 111 77 8 0 3 0 5 2 8 0 8 0 8 8 1111 00000 11 5 11 5 8 8 8 3333 0 8 222 0 8 66666666666 0 8 444 77 4 11 6 99 6 000 4444 5 666666 222222222 1 000 0 88888 3 5 1111 1 555 77 6666666 7 1 5 3 77 88888888 0000000 2 5 0 55 0 5555555555555555 5 0 66 5 1 1 9999 66 1 4 1 66 66 4 11111 4 777 11111 4 4 55 4 1 77 4 3 4 11111 5 1 00 6 33 1 5 888 5 5 44444444 5 5 5 1 0 1 66 3 5 5 3 6 5 2222 0000000000000000000000000 5 5 99 1 66 5 5 5 5 777 11 333333 0 2222222 5 11 000 5 0 0 66 1 666 5 2 777 777 0 0 77 5555 5 5 77 5 5 444444 55555555555555 1 999999999999999 5 55 77 33333 5 11 7777 33 555 5 5 1 333 5 0 1111 5 5 000 6 22 333333 1 6 3 6 7 55 1 6 1 6 3 6 8 11 99 8 8 0 5555555 2 777
lowQualScore : . .. . ... ..... . .. . . . . . . ....................... .. . .... . . ...... .......... .. . .... . .... . ........ . . .... . . ... . ... . . .. . .. ... .. .... .. .. .... ... ... .. . . . .... ...... . ........... . . . . .. . .. . .. . ... .. . . . . . . . . . . . . .... ..... .. . .. . . . . .... . . ... . . ........... . . ... .. . .. . .. . ... .... . ...... ......... . ... . ..... . . .... . ... .. ....... . . . . .. ........ ....... . . . .. . ................ . . .. . . . .... .. . . . .. .. . ..... . ... ..... . . .. . . .. . . . ..... . . .. . .. . . ... . . ........ . . . . . . .. . . . . . . .... ......................... . . .. . .. . . . . ... .. ...... . ....... . .. ... . . . .. . ... . . ... ... . . .. .... . . .. . . ...... .............. . ............... . .. .. ..... . .. .... .. ... . . . ... . . .... . . ... . .. ...... . . . . . .. . . . . . . . .. .. . . . ....... . ...
lowQualScore : 0 00 0 555 00000 0 99 7 7 0 0 0 2 55555555555555555555555 99 7 1111 7 7 999999 0000000000 66 7 6666 0 6666 6 11111111 0 5 1111 7 7 888 0 000 2 6 55 0 99 888 88 0000 22 99 4444 000 222 00 7 7 7 8888 000000 0 44444444444 0 0 0 0 00 0 88 0 88 2 000 22 8 0 2 0 5 5 0 8 0 8 0 0 8888 00000 00 6 88 6 0 0 8 2222 6 0 444 6 0 66666666666 6 0 000 77 2 88 7 22 7 222 0000 3 444444 999999999 7 000 9 99999 0 7 4444 4 777 11 3333333 9 4 7 9 99 00000000 9999999 8 0 1 11 1 2222222222222222 0 2 99 0 0 1 1111 11 0 4 9 11 11 4 11111 4 888 11111 4 4 66 4 2 66 4 7 4 22222 0 0 33 0 11 7 7 666 7 7 99999999 7 7 7 7 4 4 77 0 7 0 5 7 7 1111 7777777777777777777777777 7 7 33 4 99 0 0 0 0 999 88 666666 4 1111111 0 00 999 0 8 2 99 0 000 4 2 999 444 1 7 99 0000 0 7 99 0 0 444444 99999999999999 0 111111111111111 0 55 99 77777 7 44 4444 66 999 7 7 4 999 7 1 6666 7 7 000 7 00 777777 5 7 2 7 3 88 0 7 7 7 3 0 0 22 00 0 0 8 2222222 5 000
consensus : AATTNTAAATAACAAANTCCTGTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CAAATAG-T-CC-AAATTAATTTTG------------TTC-----TG-GT--TTACCCCC-TT----TCAG-C-CTGA---TCATC----------TCA--GGT-ACAGA----TT-ACCA----AATTC--------GA-CCCGTCTNA-AATTTA-GCGCG-AGTTATATCGGTACG---AC-TT-G-TTTAATTCCCAACACCGGAAGGCAAC-AGCT--AC---A--GTTTGT-TACACTTG--CCGACTA-C--TT---TGCCTGATTTN--TCTCGTACCA-TCCA-TCGACA-TCCATC-TGCTGT------TTTTC-CACA-AA-T-CATCACT-A-TGCCAT-C--CACTAG-AA-ACG-CTTC--GATGAACG-A-GCGTCCCAAAACGCCGCCGG-CAGACAATGGTCA-CACCTTTCCCGGGGGAGGGGGGGTCAGG-AGGAGACC-CCGATCGGAGGC-GCAGCCAGAGCGT-CCTGCGGA--GGTTGC-----GCCTGCCCC--TTTTTCCTCT-ACCACTACCCAGACG-TTCCAG-TCGGACTCNGACGACNCT-CAACAC-AGCCG-C-CGGCGGTGGCCAGCTCCCGG-CCAGTCG--CC-------CCTGCCTC-GTT---GCC-GGTATTACCTCCCCCCTACCCAC-GTGGA--G-T-CCACA-CT-GAGGGCACGTG------TCAA---------GCC---AGGCAGGG-TGAGTA--CTTCAC-ACC---TGATT---TTAA-TATA-C-G-CATTACGAGTCCCTCTGT-TTACCAGCATA--CAAGTTGTCACGATC-AA-T-T-GGGGGTCAATATCCCCANTAAA-CTCA-AGGTCAAAATCTT------G-GA-G---G-TCAGT--TCA-TNGACCTCTCC--GCTGCT--TCTNAAAT-CCGCCT--CGGA--TTTAA-AC-----AATTT-T---GAGTCCCAGGG---C-GACT-TAC-AAATTCGC-AA-TGGGCA-GATTGTGCATC-AT--G--CAAC-CTAAACCTAATT-CATTTTTGC-CTATCGAAAAGTGGACATCTGCT-T-C-TT-AGT-TTTTTTAC-CCA-GCATCA-T-GCTCGAGAAACATGTCCACAAAGCACAN-CAACTG-CTTAAGTACATC-AGGGAT-ATTCGCC----TAGC------------AGC------TTA-GC-AG-GTCTGGCAACC--TG-GT-AC-A-AGTATG-ACGAGCAATTATCGCTTA-A-CGTAAGGCT-G-CCG-CA-CC-NCAC-N-T-TCGTGGGGCG--AAAT-C-AATGCCGAGAGTACCTGGCTTTTGTATGTGT--CCGGTAGT-T--CAAACACAGACAC-ATC--TGCCCACCCCTGTAAG-TA-A------TGCA-AGT---ACCA--AATCTGCTGATGTCGA---------CCAAG-TCACCAAC--TTA-GT-GCA-ACTATTACAATGCACGT-A-CACCATGTCCTTTC--TACCCTA-AA-TGCA-GG-TT-ANCCATTCT-TGCAAACAGTGCGG-A--G-C-AA---ACACCC-ACAANCCAACTGC-AAC-AGAAGCCA-TCCAGCAA-TATTCAAACTA--GNC-CCTCGCCAA-TC-AACA-TTAAC-TC-CTT-AGCA-T-CCCATTTGCAAGGTTATCATG-A----TCTA-A-TTTTTATTTT
Reference ( family-2916 ) : AATTNTAAATAACAAANTCCTGTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CAAATAG-T-CC-AAATTAATTTTG------------TTC-----TG-GT--TTACCCCC-TT----TCAG-C-CTGA---TCATC----------TCA--GGT-ACAGA----TT-ACCA----AATTC--------GA-CCCGTCTNA-AATTTA-GCGCG-AGTTATATCGGTACG---AC-TT-G-TTTAATTCCCAACACCGGAAGGCAAC-AGCT--AC---A--GTTTGT-TACACTTG--CCGACTA-C--TT---TGCCTGATTTN--TCTCGTACCA-TCCA-TCGACA-TCCATC-TGCTGT------TTTTC-CACA-AA-T-CATCACT-A-TGCCAT-C--CACTAG-AA-ACG-CTTC--GATGAACG-A-GCGTCCCAAAACGCCGCCGG-CAGACAATGGTCA-CACCTTTCCCGGGGGAGGGGGGGTCAGG-AGGAGACC-CCGATCGGAGGC-GCAGCCAGAGCGT-CCTGCGGA--GGTTGC-----GCCTGCCCC--TTTTTCCTCT-ACCACTACCCAGACG-TTCCAG-TCGGACTCNGACGACNCT-CAACAC-AGCCG-C-CGGCGGTGGCCAGCTCCCGG-CCAGTCG--CC-------CCTGCCTC-GTT---GCC-GGTATTACCTCCCCCCTACCCAC-GTGGA--G-T-CCACA-CT-GAGGGCACGTG------TCAA---------GCC---AGGCAGGGGTGAGTA--CTTCAC-ACC---TGATT---TTAA-TATA-C-G-CATTACGAGTCCCTCTGT-TTACCAGCATA--CAAGTTGTCACGATC-AA-T-T-GGGGATCAATATCCCCANTAAA-CTCA-AGGTCAAAATCTT------G-GA-G---G-TCAGT--TCA-TNGACCTCTCC--GCTGCT--TCTNAAAT-CCGCCT--CGGA--TTTAA-AC-----AATTT-T---GAGTCCCAGGG---C-GACT-TAC-AAATTCGC-AA-TGGGCA-GATTGTGCATC-AT--G--CAAC-CTAAACCTAATT-CATTTTTGC-CTATCGAAAAGTGGACATCTGCT-T-C-TT-AGT-TTTTTTAC-CCA-GCATCA-T-GCTCGAGAAACATGTCCACAAAGCACAN-CAACTG-CTTAAGTACATC-AGGGAT-ATTCGCC----TAGC------------AGC------TTA-GC-AG-GTCTGGCAACC--TG-GT-AC-A-AGTATG-ACGAGCAATTATCGCTTA-A-CGTAAGGCT-G-CTG-CA-CC-NCAC-N-T-TCGTGGGGCG--AAAT-C-AATGCCGAGAGTACCTGGCTTTTGTATGTGT--CCGGTAGT-T--CAAACACAGACAC-ATC--TGCCCACCCCTGTAAG-TA-A------TGCA-AGT---ACCA--AATCTGCTGATGTCGA---------CCAAG-TCACCAAC--TTA-GT-GCA-ACTATTACAATGCACGT-A-CACCATGTCCTTTC--TACCCTA-AA-TGCA-GG-TT-ANCCATTCT-TGCAAACAGTGCGG-A--G-C-AA---ACACCC-ACAANCCAACTGC-AAC-AGAAGCCA-TCCAGCAA-TATTCAAACTA--GNC-CCTCGCCAA-TC-AACA-TTAAC-TC-CTT-AGCA-T-CCCATTTGCAAGGTTATCATG-A----TCTA-A-TTTTTATTTT
gi|1 : AATTCTAAATAA--AATTCCTGTTT--TG-AAT-ATAATCAGGATTAT--TTGATGTTTATATTCAAA-AG-T-CC-AAATTAATTTTG------------TTC-----CG-GT--TTACCCCC-TT----TCAGGC-CTGA---TCATC----------TCA--GGTTACAGA----TT-ACCA----AATTC--------GAACCCGTCTTACAATTTATGCGCG-AGTCATATCG-TACGGGAAC-TT-A-TTTAATTCTAAACACCGGAAGGCAACCAGCT--AC---A--GTTTGT-TACA--TG--CCGACTA-C--TT---TGCCTGATTTT--TCTCGT-TCA-TCCA-TCGACA-TCCATC-TGCTGTGTTTTATTTTC-CACA-AAAT-CTTCACT-A-TGC-ATGC--CACTAGGAA-ACG-CTTC--G-TGAACGGA-ACGTTTCCAAACGTCGCCGA-CAGCCA-TGGTCA-CACCTT-CCCGGGGAAGGGGGGGTTAGGGAGGAGACC-CCGATCGGAGGTTGCGGCCATAGCGT-CCTGCGGAAGGGTTGTTGTTTGCCTGCCCC--TTTTCCCTCT-ACCACTACCCAAACG-TTTCAG-TCGGACCCAGACGACTCAACAACAC-AGCCG-C-CGGCGGTGGCCAGCTCCCGA-CCAGTCG--CC-------CCGGCCTC-GTTTGGGCC-GGTATTACCTCCCCCTTACCCAC-GTGGGCGG-TTCCCCA-CTTGAGGACACGTT------TCAT---------GCC---AGGCAAGGGTGA-TA--CTTCAC-ACC---TGATT---TTAA-TATA-CCA-CATTACGAGTCCTTCTGT-TTATCAGCACA--CAAGTTGTCACGATC-AA---------------ATCCCCAATAAA-CTCA-AGGTCAAAATCTT------G-GA-G---G-CCAGT--TCA-TTGACCTCTTCCGGCTGCT--TCTTAAATTCCACCT--CGGA--TT-AA-AC-----AATTT-T---GAG-CCCAAGG---C-GACT-TAC-AAATTCGCCAA-CGGGTAAGATTGTGCATCCATTTG--CAAC-CTAAAC-TAATT-CATTTTTGC-CTAT--GAAAGTGGACATCTGCT-T-C-TT-AGT-TTTTTTAC-CCA-GCATTA-T-GCTCGAGAAACATGTTCATCGAGAAATT-CAAC-G-CTTA-GTACATC-AGG-AT-ATTCGCC----TAGC------------AGC------TTAAGC-AGTGTCTGGCAACC--TG-GT-AC-A-AGTATG-ATGAGCA-TT-TCGCCTA-AACGTAAGGCTGG-CTG-CA-CCAACAC-A-C-GCGTGGGGCG--AAAT-C-AAT-CCGAAAGTACTTGGCTTTTA-ATGTGT--CCGGTAGT-T--CAAACACAGACAC-ATC--TGCCCACCCCTGTAAA-TA-A------TGCA-AGT---ACCA--AACCTGTTGATGGAAA---------CCAAA-TCACCAAC--TTATGC-CCA-ACTATTACAATGCACGTCA-CACCATGTCCTTTC--TACCCTAGAA-TGCA-GG-TT-ACCCATTTTCTGCAAACAGTGCGG-A--G-C-AA---ACACCC-ACAAGCCAACTGC-AAC--GAAGCCA-TCCAGCAA-TATTCAAACTA--GGC-CCTCGCCAA-TCAAACATTTAAC-TC-CTT-TGCA-T-CCCATTTGCAAGGTTATCATG-A----T-TC-C-TTTTTATTTT
gi|10 : -AGGAGAAC-CCGATCGGAAGT-GCAACCAGAACGA-CCTGCATC--AGTTGC-----ACCTGCCCT--TTTTTCA-CT-ACCAC
gi|10 : C-AGTACCACCTCCCC--TAGCCAC-GTGGA--GCT-AGACAGCG-GATGGCCTGTG------TCAA---------GTC---AGCCAGGG-TGAGCA--CTTTA--ACCCTTTGATTAATTTAA----A-A-G-T-TTACCAGTCTCCC-AT-TTCCCGGCAAA--CAAGCTGCCACAATC-TA-T-TTGGGGGTCA-TATCCCCAccttgttgtgcaatcttgttatttccactccaaccggccagaggatgtcactacgacgtgaatcgcatcagtaccacctcccctagccacgtggagctagacagcggatggcctgtgtcaagtcagccagggtgagcactttaaccctttgattaatttaaaagtttaccagtctcccatttcccggcaaacaagctgccacaatctatttgggggtcatatcccca
gi|12 : aggagaacccgatcggaagtgcaaccagaacgacctgcatcagttgcacctgcccttttttcactaccacccttgttgtgcaatcttgttatttccactccaaccggccagaggatgtcactacgacgtgaatcgcatTCAAGATTATATTTGAT-TTCATAT-CAAATAG-T-CC-AAATTAATTTTG------------G-A-----TG-GTGTTTATTTCA-TT----TAAA-TTCTTA---TTGTCATTGTGAGAATCATCAGT-ACAGA----TT-CTCA----ATTCT--------GA-CATAT-TCA-GATTTA-GCCAG-AGTTATATCGGTACA---AC-TT-G-ATTAATTTCCAACACTGGAA-GCGGC-AGTC--AT---AAGGCTT-T-TACACTTGGACCAACCA-C--TT---
gi|13 : TAT--TTGAT-TTC-TAT-CAAATAG-T-CC-GA-TTAATTTTG------------TTT-----TG-GT--T-ACCCCTGTT----TTAA-C-C--A---TTACT----------TCA--GTT-TGAAAATCTTT-AGTATGATAATTCATTTACCCGA-CTCGTCTAA-AATGTA-ACACG-AGATATATC-GTACG---ACATT-ATTTTGATTCC--ACACCGGA
gi|14 : CAGTAAAGTTCAGAGTTCAAAATTCTCCCAACGTGA-GTTGG-TCAATCATTA-TTGACCTCTCCG-GCTGCTACTCAGAGAG-ACTCCTGACGCA--TTTAA-ACCACCAAACTTATGCGGAGTTCCAAGGTGTT-GACTGTGCTAAATTCGA-AA-TAG--A-GACCACAAATT-AT--GTTCAA--CTAAAgcatgattttaagctgttaccgctgactaaaggttgc
gi|15 : ATAG-T-CC-AAAT-AATTTTG------------TTCCCGTCTG-TT--TTACCCCC-TT----TCAG-C-CAG----TCATC----------TCAT-GGT-ACAGAT---TT-ACCA----AATTC--------GA-CCCGT-TCT-AATTTA-GCGCG-AGTCATATCGGTACGA--AC-TT-A-TTTAATTCATAACACCCGGAAGCAACAAGCTACAC---A--GTTTG--TACA--TG--CCGACTA-C--tgctag
gi|16 : AACACAGACAC-CTC--TGCCCACCCCTGTAAG-TA-AATTGAATGCA-ATT---AGCG--AATTTGCTGATGTCAA---------C-AAA-TCACCA-C--TTA-GTTGCA-ACTACTACAATGCACGT-A-CACCGTGTCCTTTT--TACCCTA-AA-TGCA-GGTTT-AGCCATTTT-TGCAAACAGTGCGGTG--G-C-AA---aat
gi|17 : GAGAT-ATCAGAT----TGGC------------AGC------T---GCCAG-GTT---CAACTATTG-GT-TT-A-GCTATG-ACGAGCAATT-CCGCCTC-A--GAATCGCTAG-C---CAGCC-ACAC-C-TGTCATAGGGCA--TTAT-T-AA--CCAAGAAT-TGTGGCTATTGTACATTT--C
gi|18 : aaaatattgtcATATTCTCATTAAG-C------GTCAGA-TCTT------G-GA-AA--G-TCATT--TTA-TGGATCT-TCC--CCTGCT--AGCCAAAT-CCATTG--CAAAACTTGAT-AC-----A---T-T---GACTCCCATAG---C-AGTC-TGC-AAATTCA--AA-T-GGCA-GCCTGTGCACC-Ataata
gi|19 : ACCTCTC---GCTGCT--TCTAAAAT-CCGCCT--CAGA--TCTAA-AC-----AATTT-T---GAGCCCCAGGG---T-GATT-TAC-AAATTCGC-AG-T-GGCA-GATTGTGTATC-AT--G--CAAC-CTAAACaaattcacct
gi|2 : TAT--TTGAG-TTTATAT-CGATTAGGTGCC-AAAT-AATTTTG------------TTC-----TG-TC--TTACCGCT-TA----TCAG-C-CTGA---TCATC----------TCA--GG--ACAGA----TTTACCA----A-TTC--------GA-CCCGTCTAA-AATTTA-GCGCGGAGTTATATCGGTCCG---AC-TTTG-CTTAATTCT-GACACCGGAAG--AAC-A-CT--AC---A--GTT-GTATACA--TG--CCGACTA-CA-TT---TGCCTGATTTTCTTCTCGGGTCAATCCAGTCGACAATCCATCATGCTGT------TTTTCACACA-AA-TTCATCACT-A-TGCCAT-C--CACTAG-AA-ACGGCTTC--GATGAACG-AAGCGTTCCGAAACGC-GCCAAACAGACAATGGTCAACACCTTTCCCGGGGGAAGGGGTGTTAGG-AG-AG-CC-CCGTGCGG-GGC-GCAGCCAGAGCGT-CCTGCGGA--GGTTGT-----GCATG-CCC--TTTTCCCTC--ACTCTTACCCAGACGTTTCCAGTTCGGACTC-GACGACAGT-CAACAC-AGCTG-C-CGGCGGTGGCCA-CTCCCGA-CCAGTCG--CC-------CCGGCCTC-GCT---GCCAGGTATTACCTCCCCGCTAGCCACTGTGGC--G-T-CCACA----GAGGACACGTT------TTCA---------G-C---AGGCAGAGGTGAGTA--CTT--C-ACC---TGATTA--TTAATTATA-C---CATTACGAGT-CCTCGGTCTTATCAGCATAATC-AGTTGTCACGATCGAA-T-T-GGGG-TC-ATATCCCC--TAAA-CTCA-AGGTC-AAATCGT--------GA-G---G-GCAGT--TCAGTCGACGCGTCT--GCTGC---TCTTTAAT-CCCACT--CGGA--TTTAA-AC-----AATTT-T---G-GTCCCAGGC---C---TT-CAC-AAATTCGC-AATTGGTTA-GATTGTG-ATC-AT--GC-CAACTCTAAACCTAATT-CA-TTTTG--CTATTGAAAAGTGGACATCTGCT-T-C-TTCAGT-TTTTT-----CA-GC-TTA-TCGATCGAGAAACATGTTCACAAAGCACAA-CA--TG-CTTAAGTAC-TC-AGGGAT--TTCGCC----TAGC------------AGC------TAG-GC-AG-GTCT-GC-ACC--TG-GT-ACGA-AGT-TG--TGAAC-AT--TCGCT---A-CGTAAGTCT-GCCTGCCA-CCAACAC---T-TCGTGGGGCG--AAATGC-AATGGCG-CAGT--CTGCCTTTTGTATGTGC--CCGGTAGT-T--CACACA-AGACAC-ATC--TG-CCACCCCTGTAAATTA-A------TGCA-AGT---ACCAAGAAACTGC----GTGAA---------CCAAGATCACC-AC--T---GT--CA-AC--TTATAATG-ACGT-A--ACCATGTCCTTTCG-TA-CCTA-AA-TGCA-GT-TTCCACCATTCT-TGCAAAC-GTGCGG-AAGG-C-AA---ACACCC-ACAGA--GACTGCGAACAAGAAGCCA-TCCAGC-A-TATTT-AACTAAGGCC-CCTCGCCAATTC-AACA-TTAAC-T--CTA-AGCA-TACCCATTTGCAAGGTTATCATA-T----TCTA-A-TTTTGATTTt
gi|20 : GATTAT--TTGAT-TTTATAT-CAAATAG-T-CC-AAATTAATTTTG------------TTC-----TGCGT--TTACCCCC-TT----TCAG-C-CTGA---TCATC----------TCA--AGT-ACAGA----TT-ACCA----AATTC--------GA-CCCGTCgttgggtttacttccggtt
gi|21 : AGA----TT-ACCA----AATTC--------GA-CCCGTCT-A-AATTTA-ACGCG-AGTCATATCGATACG---AC-TT-A-TTCAATT-CTAACATCTGAA-GCAAC-AGCT--AC---A--GTTTGT-TACA--TG--CC
gi|22 : AACACCGGAAG-CAAC-AGCT--AC---A--GTTTGT-TAAA--TG--CCGACTA-CAATT---TGCCTGTTTTT--TCTCG--CCA-TCCA-TCGA------ATC-T-----------------------------TCATT-A-TGCCAT-C--CACTAG-AA-AC
gi|23 : TATCGCTT--A-CGCAAGGCT-C-TCA-CA-CT-TCATAT-T-TCGAGGGGAG--GGGT-T-AATACTGAG
gi|24 : gcagGGTTAT--TTGAT-TTTATAT-CATATAG-T-CCAAAATTGATTTTG------------TTT-----TGTGT--TTtnattggtcattg
gi|3 : ---TGCTTGATTAA--TCTTGT-CAA-TCCA-TCGACA-TCCATC-TGCTGT------TTTTC-TACA-AA-T-CATCACTGA-TGCCAT-CTCCACTAG-AAGACG-CTTC--GACGAACG-A-ACGTCTTAAACCGCCGCCGG-CAGACAATGGTTA-CACTTTTCCCGGGGGAAGGGGG-TCAGG-AGGAGACCACCGATTGGAG-C-GCAGCCAGAGCGTTCCTTCG-A--GGTTGT-----GCCTGCCCC--TTTTTACGCTTACCACTACCCAGACG-TTC-AG-TCGGACTCAGACGAC-CA-AAACACCAGCCG-T-CAGCGTGGGCCAGCTCCCGGGCCAGTC---CT-------CCTGCCTCCGTT---GCT-GG-ATTACC----CCCTACC-A--GTGGA--G-T-CCACA----GAGG-CACGTAATTTTTTCAAAGGGGGGGGGCCCAAGGGCAGGAA-AAGTATACTTCACCACC---TGATT---TTAA-TATA-C-A-CATTACAA-TCCCTCTGT-CTATCAGC-TA--CAAGTTGCCACGATC-AAAT-T-GGG----AATAGCCCCAATAA--CTCA--GGTCAAAATCT-------G-GA-G---G-ACAGT--GCA-TC-ACCTCTAC---CTGCT--TCTGAAAT-CCGT-T--CGAA--TTTAAGAC-----AATAT-T---GAGTCCCAGGG---CAGACT-TAC-AAGTTCGC-AA-TTGGCA-GAT-GTGCATC-AC-----CAAC-CTAAACCTAATTTCACTTTTGCTCTATTGAAAAGTGGACATTTCCT-T-C-TA-GGT-TTT---AC-C-A-GCATTA-T-------------TGTTCACAAAGCACAT-CAACTGGCTTAAGTACATT-AGGGAT-ATTCGCC----TACC------------A--------CTA-GC-AG-GTCTG-CACCC--TGTGTTAC-A-AGTATGGATGAGCAAT-ATCGC--AGA-CGTAAGGCT-G-CTG-CA-CC-ATAT-C-T-TCAATGGGTG--AAAT-CGAATGC---GAGTACTGGGCTT--GTATGTGT--CCGGTAGT-TTTCAA-CACAGACAC-ATC--TGCCCACCCCTGTAAG-TA-A------TTCACAGT---ACCA--CACCTGTTGA-AACAA---------CCAAA-TTACC-AC--TTA-TT-GCA-GCTATTATATTTGACGT-ACCGCCATGTCCGTTCCATATCCCA-AA-TGCA-GT-TT-AACCATATT-T---AACAGTGCGG-AG-G-CAAA---ACACCCGACAAACCACATGC-AAC-ATGAACCA-TCCA--AATTATTCAAACTAT-GCC-CCTCGTCAA-TCGAATAGTTAAC-TCGCTTAAGCATT-CCCATTTGCAAGGTTATCATGAA----TCTA-A-TTTTTATTCT
gi|4 : AATTGTAAATAACAAAGT---GTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CAAATAG-T-AC-AAATTAATTTTGGAGGGTGTTTACTTC--------AT--CTATCTAC-TTACGGTCAG-C-C-GAGAATCATC---------------GGT-ATGGA----TC-CTCA----ATTTT--------GA-CACATTTTA---TTTA-GACAG-GGTTATATCGGTACG---AC-TT-G-TTTAATTTCCAACAACGGAAG-CAAC-AGTC--AC---ACGGCTT-T-TACACTTG--G-GACTA-A--ATATATGCCAAATCTA--TTTCCTACCA-TCCA-TCGTCA-TCCGGC-GG-TAT------TTATC-CTCGTAA-T-CACTACC-AATGTCAC-C--CACCAA-AA---G-TTCCAAGATGAATG-A-GCGTCC-AAAACACAGTCGG-CAGACGATGGACA-CACCTT-CCTGGGGAAGGGGGGGTCAGG-AGGAGACC-CCGACCGGAGGC-GCAGTCACAGCGC-CCTGCAGA--GGTTGC-----GCCTGCCCCCTTTTTTCCTCC-ACC------CAGACG-GTCCAG-TCCTACTTTGACGACGCT-CAACCC-AGCCCTC-CAGCGGTGGTCCGCGCTCAG-CCAGTCGTTCCTCATCTTCCTGCCTT-GTT---GCC-TGCTTTACCTCCCCCA-ACCCAC-GTGGA--G-T---GTA-CT-GAGGGCACGTG------TCAA---------GCC---AGGCAGTG-TGAGTA--TTTCAC-ACC----G--T---TTAA-TATA-CTG-CATTACGAGTCC-TCTGT-TTACCAGCATA--CAAGTTGTCACGATC-AACT-T-GGGGACCA-TATCCCCACCAAA-CGCA-AGGTCAAAATCTA------G-GAAG---G-TCAGT--TCA-TAGACCTCTC---GCTGCT--TCTAAAAT-CCGCCT--CGGA--TTTAA-AA-----CATTT-T---GAGTCCCAGGG---T-GACT-TAC-AAATCTGC-AA-TGG-CA-GATTGTGCATC-AT--T--CATC-CTAAACCTAATA-CAATTTTGC-CTATCGAAAAGTGGACATCTACC-T-CCTT-AGT-CTTT--AC-T-A-GCATCA-T-GTTTGAAAAACATGTCCACAAAGCACAG-CAAATA-CTTAAGTATTTT-CGGGAA-ATTCGCC----TAGC------------AGC------TT--GT-AG-GTCTG-CAACT--TG-GT-AC-A-TGTATG-ACGAGCAAT-ATCGCTTA---CGTAAGGCT-G-CCA-CA-CC-CCAT-ACT-TCGTGGGGTG--AACT-C-AATACTGAA--TAC-TGGCTTTTGTATGTGT--CCGGTAGT-T--CAA-CACAGACAC-CCC--TGCCCCCTCCCGCTAG-TA-A------------------------ATCTGCTGATGTTGAGTAATCACCCCAAG-TCACCAAtggtttactttccggtttttgtcttcaatatttagccacggggggctcgggaatcccacatctcaaaagcacaaaacaaaaacatgacaatagcaagtgaataattagtaaagaatcggggcttcaaagggtttgctggccatttaaaaattcacccctcgttaatctacaagttcccctt
gi|5 : accatgctcttcggtgTTATATCGGTACG---GC-TT-G-TTTAATTTCCAACACCGGAA-GCGAC-GGTC--ACAAGA--ATT--T-TACACTTG---GGACTAGA--TT---TGCCAAATCTA--TATTTTACCA-TCCA-TCGACA-TCCAt
gi|5 : CCCAGACG-TCCCTT-TCCGACTCTGACGACTCT-CAGCCC-AGCCA-TTCGGTGGTGACCCGCTCTCAG-CCAGTTG--TT-------TCTGCCTT-GTT---GCC-TGCATTATCTCCCCC-TACCCAC-TTGGA--G-T-CTAC---T-GAGGCCATGTG------TCAA---------GCC---AGGTAGGG-TAATCA--TTTCAC-ACC---TGAGG---TTAA-TACACC-GTCTTTA-GAGT-CCTCTGT-TTATAAGCATA--CAAGTTGTCACGATC-AA-CGT-GGGGATCAA-ATTCTCACCAAA-CTCA-AGGTCCAAATCCG------G-CACT---G-TCATT--GTA-TAGACCTAT-C--GCTGCT--TCTAAAAT-CCGCCT--CAGA--TTTAA-AT-----AATTT-T---GAGTCCCAGGG---T-GATT-TAC-AAATTCGC-AG-T-GGCA-TGTTGTGTATC-AT--G--CAAC-CTAATCTTAATA-CATTCTTGT-CTATCgcggcatttatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccagacgtccctttccgactctgacgactctcagcccagccattcggtggtgacccgctctcagccagttgtttctgccttgttgcctgcattatctccccctacccacttggagtctactgaggccatgtgtcaagccaggtagggtaatcatttcacacctgaggttaatacaccgtctttagagtcctctgtttataagcatacaagttgtcacgatcaacgtggggatcaaattctcaccaaactcaaggtccaaatccggcactgtcattgtatagacctatcgctgcttctaaaatccgcctcagatttaaataattttgagtcccagggtgatttacaaattcgcagtggcatgttgtgtatcatgcaacctaatcttaatacattcttgtctatc
gi|6 : ttatatcggtacggcttgtttaatttccaacaccggaagcgacggtcacaagaattttacacttgggactagatttgccaaatctatattttaccatccatcgacatccagcggcatttatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngATCTGCT-TTC-TT-AGT-TTTATTCC-CCACGCATTAAT-GCTCGAGC--CATGTTCACCGGGCACACACCACTG-CTCA-GT-CATCCAGGGCTTATAAGCCACCCCAGCGTCACAACATCCAGCCCCTTTTTA-GC-CG-GT-TGCCA--C--TG-GC-TC-ACAGTATG-CTGAGCAATTATCGCTAC-A-CGTA-GGCT-G-CTG-GC-CC-CCAC-T-T-TCGTGGGGCGCCACAT-C--ATGCCG-CAGT--CTGGCTTTTGTCTGT-C--CCGGTAGTGT--C--ACACCGACACAATC--TGCCCCACCCTGTA---TACA------TGCA-AGTCCCCCCA-----CTGCTCATGC--A---------CCACA-CCTCCCCC--TTA-GT-GCACCCTCTTACTAC-CACGT---CCCCCTGTCCTTTC--TACCT----A-TGCACGG-TT--CCCCTTCT-TGCACACAGTGC------G-C-AAGGCACACCC-CCCACCACACTGC---C-CGCAGCCACTCCAGCCA-TATTC-ACCTC--GGC-CATCGCC-A-TC-ACCA-TTCACATC-CTC-CGCA-T-CCCCTTTGC-AGGTTATCAC--ATCCTTCTACATTTTTTATTT
gi|7 : tTCTTGT-CTATCGAAAAATGGACATCTCCCCT-C-TT-AGT-ATTT--AC-TTA--CATCA-T-GCTTAAAAAACATGCCCACAAAGCATAT-CAAATA-TCAAAGTACATC-AAGAAT-AATCACC----TAGT------------GGC-------TA-GC-AG-GTCT-GCAACT--TG-GT-AC-A-AGTATG-gttgtttacttccggttttcgttcttcaaccatatttaggaccacgggggggctgagcactcccacactccagcatcacccacctgccacagacgcgcgtgaattagttcaggacagtcgggcttccatcgggtgctggcaccactttcatttctccccccctcgttaaactaacccagtttctcttt
gi|7 : CCCCTTTAAG-TA-A------TGCA-ATT---AGCA--GATCTGCTGAT----A---------CCAAG-CAATCAACCCTTA-GTTGTA-ACTATTACAATGCAAGT-A-AATCATGTCCTTTC--TACCCCA-AA-TGCA-GGCTT-ATCCATTCT-TACAAACAGTGCGG-AG-G-C-AA---ACACCG-ATAATTCAACTGC-AACAAGAAACCA-TCCAGCAA-CATTCAAACTA--GACTCCTTGCAGA-TC-Annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcccctttaagtaatgcaattagcagatctgctgataccaagcaatcaacccttagttgtaactattacaatgcaagtaaatcatgtcctttctaccccaaatgcaggcttatccattcttacaaacagtgcggaggcaaacaccgataattcaactgcaacaagaaaccatccagcaacattcaaactagactccttgcagatcac
gi|8 : tcttgtctatcgaaaaatggacatctcccctcttagtatttacttacatcatgcttaaaaaacatgcccacaaagcatatcaaatatcaaagtacatcaagaataatcacctagtggctagcaggtctgcaacttggtacaagtatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntA-CG-GATGGCCCGTG------TCAA---------GTC---AGCTAGGG-TGA---------AC-AC-------TT---TT--------------TTACCAGTATCTCT----TACCAGCA-A--CAAACTGTCACAATCTAC-T-T-GGGGGTCA-TATCTCCAGTAAA-CTCA-AGTTCAAAATCTA------G-GA-G---GGTCTAT--TTA-TTGACCTCTC---GCTGCT--ACTCAAAT-CTTCCT--CGGA--TTTAA-AC-----AGTTT-C---GAGTCCCAGGG---T-GACT-TGC-ATATTCGA-AA-TGGA-A-AATTTTGTTTA-AC--T--AAAT-CTAAACCCAA---CATTTTTTCAGTATCGAAAAGTGGACATCCGCT-T-------GTCTTCTTTACTTTA-GCATCT-T-GCTGGAAAAGTATGCCCACAAGACTTAA-GAATTG-CTCAAc
gi|9 : ttggagcgagaca--TG-GT-AC-A-AGCACG-ATGAGCAAT-ATCGTTTA---CGCAAGGCC-C-TCA-CA-CT-TCAT-ACT-TCGAGGAGAG--GGGT-T-AATACTGAGCATA---GGCTACTATATGTGTTACC--TAAT-----AAAC-TA-ACAT-ATCCCTGTACAGCCCGTTTGG-TA-A------TACA---------------TCTTTTGACGTTGG---------TAAAG-TCTCCC-C--TTGCGG-GCA-G-TAATACAATGCAGGT-T-AATCATGAACGTTC--TACC--A-AACTGCA-GG-TTTAGCCATTCT-TGCAAACGGTGAGG-A--GGC-AA---ACACCC-ACAATCCACCTGC-A--------CCA-CTAAGCAA-T--TCAAACCC--GTC-CCTCGCCAG-TT-AACA-TTAAC-TT-TTT-AGCG-T-CACATTTGCAGGGtatcgttttgcacccagc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GAAGTCAGGCTCCACAGGGTTGCTGAACCATTTAAAAGTCCAACTCTTGTTAAATTACAAGTTTCCCCCTTGGCCTCGTTCCAATGAAATATGGCGATGTGTACCTGATACACCATCTTTCTTACCCTGAACATAACTCGGCCAACACCATTATCGACCCTAGAGTTTGTTCTATTACCTATTCCAGTATTGACCAAGATCAAGCCGCGAGTATGATTTCCCTCTCGGGAAAGAATTCACTATTAGCCAAGTCAGA
Alignments
lowQualScore : 11 222 22222 1 22222222222222222222222 1111 111111 2222222222 11 1111 1111 11111111 111 11 1 11 1111 22 1111 111 111 11 222222 11111111111 11 1 11 111 1 1 1 1111 22222 11 11 1111 111 22222222222 111 11 111 2222 111111 222222222 111 111111111111 22222 222222 111 2222222222222222 1111 11111 11111 1 22222 11 11 22222222 1111 4444444444444444444444444 11 22 222222 1 11 222 222 1111 111111 22222222222222 222222222222222 11 11111 1111 11 1 1 2222 111 222222 11 1 1 11 3333333 111
lowQualScore : 1 88 1 000 22222 5 77 5 5 5 5 5 3 88888888888888888888888 66 5 2222 5 5 333333 5555555555 33 5 5555 5 0000 3 88888888 5 4 7777 5 5 333 5 888 2 9 99 0 66 888 33 1111 77 66 6666 000 000 77 6 6 6 8888 333333 1 22222222222 1 8 8 8 11 8 88 0 33 3 111 77 8 0 3 0 5 2 8 0 8 0 8 8 1111 00000 11 5 11 5 8 8 8 3333 0 8 222 0 8 66666666666 0 8 444 77 4 11 6 99 6 000 4444 5 666666 222222222 1 000 5 5 88888 3 5 444444444444 77 99999 0 6 5 3 77 000000 4 111 222 2 5 0 55 0 5555555555555555 5 0 66 5 1 1 9999 66 1 4 1 66 66 4 11111 4 777 11111 4 4 55 4 1 77 4 3 4 11111 5 1 00 6 33 1 5 888 5 5 44444444 5 5 5 1 0 1 66 3 5 5 3 6 5 2222 0000000000000000000000000 5 5 99 1 66 5 5 5 5 777 11 333333 0 0 888 11 000 5 0 0 66 1 666 5 2 777 777 0 0 77 5555 99 5 77 5 5 444444 55555555555555 1 999999999999999 5 55 77 33333 5 11 3333 0 33 555 5 5 1 1 1 5 0 1111 5 5 000 6 22 333333 1 6 3 6 7 55 1 6 1 6 3 6 8 11 99 8 8 0 5555555 2 777
lowQualScore : . .. . ... ..... . .. . . . . . . ....................... .. . .... . . ...... .......... .. . .... . .... . ........ . . .... . . ... . ... . . .. . .. ... .. .... .. .. .... ... ... .. . . . .... ...... . ........... . . . . .. . .. . .. . ... .. . . . . . . . . . . . . .... ..... .. . .. . . . . .... . . ... . . ........... . . ... .. . .. . .. . ... .... . ...... ......... . ... . . ..... . . ............ .. ..... . . . . .. ...... . ... ... . . . .. . ................ . . .. . . . .... .. . . . .. .. . ..... . ... ..... . . .. . . .. . . . ..... . . .. . .. . . ... . . ........ . . . . . . .. . . . . . . .... ......................... . . .. . .. . . . . ... .. ...... . . ... .. ... . . . .. . ... . . ... ... . . .. .... .. . .. . . ...... .............. . ............... . .. .. ..... . .. .... . .. ... . . . . . . . .... . . ... . .. ...... . . . . . .. . . . . . . . .. .. . . . ....... . ...
lowQualScore : 0 00 0 555 00000 0 99 7 7 0 0 0 2 55555555555555555555555 99 7 1111 7 7 999999 0000000000 66 7 6666 0 6666 6 11111111 0 5 1111 7 7 888 0 000 2 6 55 0 99 888 88 0000 22 99 4444 000 222 00 7 7 7 8888 000000 0 44444444444 0 0 0 0 00 0 88 0 88 2 000 22 8 0 2 0 5 5 0 8 0 8 0 0 8888 00000 00 6 88 6 0 0 8 2222 6 0 444 6 0 66666666666 6 0 000 77 2 88 7 22 7 222 0000 3 444444 999999999 7 000 7 7 99999 0 7 444444444444 11 11111 7 6 7 9 99 000000 3 777 111 8 0 1 11 1 2222222222222222 0 2 99 0 0 1 1111 11 0 4 9 11 11 4 11111 4 888 11111 4 4 66 4 2 66 4 7 4 22222 0 0 33 0 11 7 7 666 7 7 99999999 7 7 7 7 4 4 77 0 7 0 5 7 7 1111 7777777777777777777777777 7 7 33 4 99 0 0 0 0 999 88 666666 4 0 000 00 999 0 8 2 99 0 000 4 2 999 444 1 7 99 0000 99 7 99 0 0 444444 99999999999999 0 111111111111111 0 55 99 77777 7 44 9999 1 66 999 7 7 4 4 0 7 1 6666 7 7 000 7 00 777777 5 7 2 7 3 88 0 7 7 7 3 0 0 22 00 0 0 8 2222222 5 000
consensus : AATTNTAAATAACAAANTCCTGTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CAAATAG-T-CC-AAATTAATTTTG------------TTC-----TG-GT--TTACCCCC-TT----TCAG-C-CTGA---TCATC----------TCA--GGT-ACAGA----TT-ACCA----AATTC--------GA-CCCGTCTNA-AATTTA-GCGCG-AGTTATATCGGTACG---AC-TT-G-TTTAATTCCCAACACCGGAAGGCAAC-AGCT--AC---A--GTTTGT-TACACTTG--CCGACTA-C--TT---TGCCTGATTTN--TCTCGTACCA-TCCA-TCGACA-TCCATC-TGCTGT------TTTTC-CACA-AA-T-CATCACT-A-TGCCAT-C--CACTAG-AA-ACG-CTTC--GATGAACG-A-GCGTCCCAAAACGCCGCCGG-CAGACAATGGTCA-CACCTTTCCCGGGGGAGGGGGGGTCAGG-AGGAGACC-CCGATCGGAGGC-GCAGCCAGAGCGT-CCTGCGGA--GGTTGC-----GCCTGCCCC--TTTTTCCTCT-ACCACTACCCAGACG-TTCCAG-TCGGACTCNGACGACNCT-CAACAC-AGCCG-C-CGGCGGTGGCCAGCTCCCGG-CCAGTCG--CC-------CCTGCCTC-GTT---GCC-GGTATTACCTCCCCCCTACCCAC-GTGGA--G-T-CCACA-CT-GAGGGCACGTG------TCAA---------GCC---AGGCA-G-GGTGAGTA--CTTCAC-ACC---TGAT---T-TTAA-TATAC-G-CATTACGAGTCCCTCTGT-TTACCAGCATA--CAAGTTGTCACGATC-AA-T-TGGGGGTCAATATCCCCANTAAA-CTCA-AGGTCAAAATCTT------G-GA-G---G-TCAGT--TCA-TNGACCTCTCC--GCTGCT--TCTNAAAT-CCGCCT--CGGA--TTTAA-AC-----AATTT-T---GAGTCCCAGGG---C-GACT-TAC-AAATTCGC-AA-TGGGCA-GATTGTGCATC-AT--G--CAAC-CTAAACCTAATT-CATTTTTGC-CTATCGAAAAGTGGACATCTGCT-T-C-TT-AGT-TTTTTTAC-CCA-GCATCA-T-GCTCGAGAAACATGTCCACAAAGCACAN-CAACTG-CTTAAGTACATC-AGGGAT-ATTCGCC----TAGC------------AGC------TTA-GC-AG-GTCTGGCAACC--TG-GT-AC-A-AGTATG-ACGAGCAATTATCGCTTA-A-CGTAAGGCT-GCC-G-CACC-NCAC-N-T-TCGTGGGGCG--AAAT-C-AATGCCGAGAGTACCTGGCTTTTGTATGTGT--CCGGTAGT-T--CAAACACAGACACA-TC--TGCCCACCCCTGTAAG-TA-A------TGCA-AGTACC---A--AATCTGCTGATGTCGA---------CCAAG-TCACCAAC--TTA-GT-GCAAC-TATTACAATGCACGT-A-CACCATGTCCTTTC--TACCCTA-AA-TGCA-GG-TT-ANCCATTCT-TGCAAACAGTGCGG-A--G-C-AA---ACACCC-ACAANCCAACTGC-AAC-AGAAGCCA-TCCAGCAA-TATTCAAACTA--GNC-CCTCGCCAA-TC-AACA-TTAAC-TC-CTT-AGCA-T-CCCATTTGCAAGGTTATCATG-A----TCTA-A-TTTTTATTTT
Reference ( family-2916 ) : AATTNTAAATAACAAANTCCTGTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CAAATAG-T-CC-AAATTAATTTTG------------TTC-----TG-GT--TTACCCCC-TT----TCAG-C-CTGA---TCATC----------TCA--GGT-ACAGA----TT-ACCA----AATTC--------GA-CCCGTCTNA-AATTTA-GCGCG-AGTTATATCGGTACG---AC-TT-G-TTTAATTCCCAACACCGGAAGGCAAC-AGCT--AC---A--GTTTGT-TACACTTG--CCGACTA-C--TT---TGCCTGATTTN--TCTCGTACCA-TCCA-TCGACA-TCCATC-TGCTGT------TTTTC-CACA-AA-T-CATCACT-A-TGCCAT-C--CACTAG-AA-ACG-CTTC--GATGAACG-A-GCGTCCCAAAACGCCGCCGG-CAGACAATGGTCA-CACCTTTCCCGGGGGAGGGGGGGTCAGG-AGGAGACC-CCGATCGGAGGC-GCAGCCAGAGCGT-CCTGCGGA--GGTTGC-----GCCTGCCCC--TTTTTCCTCT-ACCACTACCCAGACG-TTCCAG-TCGGACTCNGACGACNCT-CAACAC-AGCCG-C-CGGCGGTGGCCAGCTCCCGG-CCAGTCG--CC-------CCTGCCTC-GTT---GCC-GGTATTACCTCCCCCCTACCCAC-GTGGA--G-T-CCACA-CT-GAGGGCACGTG------TCAA---------GCC---AGGCA-G-GGTGAGTA--CTTCAC-ACC---TGAT---T-TTAA-TATAC-G-CATTACGAGTCCCTCTGT-TTACCAGCATA--CAAGTTGTCACGATC-AA-T-TGGGGGTCAATATCCCCANTAAA-CTCA-AGGTCAAAATCTT------G-GA-G---G-TCAGT--TCA-TNGACCTCTCC--GCTGCT--TCTNAAAT-CCGCCT--CGGA--TTTAA-AC-----AATTT-T---GAGTCCCAGGG---C-GACT-TAC-AAATTCGC-AA-TGGGCA-GATTGTGCATC-AT--G--CAAC-CTAAACCTAATT-CATTTTTGC-CTATCGAAAAGTGGACATCTGCT-T-C-TT-AGT-TTTTTTAC-CCA-GCATCA-T-GCTCGAGAAACATGTCCACAAAGCACAN-CAACTG-CTTAAGTACATC-AGGGAT-ATTCGCC----TAGC------------AGC------TTA-GC-AG-GTCTGGCAACC--TG-GT-AC-A-AGTATG-ACGAGCAATTATCGCTTA-A-CGTAAGGCT-GCC-G-CACC-NCAC-N-T-TCGTGGGGCG--AAAT-C-AATGCCGAGAGTACCTGGCTTTTGTATGTGT--CCGGTAGT-T--CAAACACAGACACA-TC--TGCCCACCCCTGTAAG-TA-A------TGCA-AGTACC---A--AATCTGCTGATGTCGA---------CCAAG-TCACCAAC--TTA-GT-GCAAC-TATTACAATGCACGT-A-CACCATGTCCTTTC--TACCCTA-AA-TGCA-GG-TT-ANCCATTCT-TGCAAACAGTGCGG-A--G-C-AA---ACACCC-ACAANCCAACTGC-AAC-AGAAGCCA-TCCAGCAA-TATTCAAACTA--GNC-CCTCGCCAA-TC-AACA-TTAAC-TC-CTT-AGCA-T-CCCATTTGCAAGGTTATCATG-A----TCTA-A-TTTTTATTTT
gi|1 : AATTCTAAATAA--AATTCCTGTTT--TG-AAT-ATAATCAGGATTAT--TTGATGTTTATATTCAAA-AG-T-CC-AAATTAATTTTG------------TTC-----CG-GT--TTACCCCC-TT----TCAGGC-CTGA---TCATC----------TCA--GGTTACAGA----TT-ACCA----AATTC--------GAACCCGTCTTACAATTTATGCGCG-AGTCATATCG-TACGGGAAC-TT-A-TTTAATTCTAAACACCGGAAGGCAACCAGCT--AC---A--GTTTGT-TACA--TG--CCGACTA-C--TT---TGCCTGATTTT--TCTCGT-TCA-TCCA-TCGACA-TCCATC-TGCTGTGTTTTATTTTC-CACA-AAAT-CTTCACT-A-TGC-ATGC--CACTAGGAA-ACG-CTTC--G-TGAACGGA-ACGTTTCCAAACGTCGCCGA-CAGCCA-TGGTCA-CACCTT-CCCGGGGAAGGGGGGGTTAGGGAGGAGACC-CCGATCGGAGGTTGCGGCCATAGCGT-CCTGCGGAAGGGTTGTTGTTTGCCTGCCCC--TTTTCCCTCT-ACCACTACCCAAACG-TTTCAG-TCGGACCCAGACGACTCAACAACAC-AGCCG-C-CGGCGGTGGCCAGCTCCCGA-CCAGTCG--CC-------CCGGCCTC-GTTTGGGCC-GGTATTACCTCCCCCTTACCCAC-GTGGGCGG-TTCCCCA-CTTGAGGACACGTT------TCAT---------GCC---AGGCAAG-GGTGA-TA--CTTCAC-ACC---TGAT---T-TTAA-TATACCA-CATTACGAGTCCTTCTGT-TTATCAGCACA--CAAGTTGTCACGATC-AA--------------ATCCCCAATAAA-CTCA-AGGTCAAAATCTT------G-GA-G---G-CCAGT--TCA-TTGACCTCTTCCGGCTGCT--TCTTAAATTCCACCT--CGGA--TT-AA-AC-----AATTT-T---GAG-CCCAAGG---C-GACT-TAC-AAATTCGCCAA-CGGGTAAGATTGTGCATCCATTTG--CAAC-CTAAAC-TAATT-CATTTTTGC-CTAT--GAAAGTGGACATCTGCT-T-C-TT-AGT-TTTTTTAC-CCA-GCATTA-T-GCTCGAGAAACATGTTCATCGAGAAATT-CAAC-G-CTTA-GTACATC-AGG-AT-ATTCGCC----TAGC------------AGC------TTAAGC-AGTGTCTGGCAACC--TG-GT-AC-A-AGTATG-ATGAGCA-TT-TCGCCTA-AACGTAAGGCTGGCT-G-CACCAACAC-A-C-GCGTGGGGCG--AAAT-C-AAT-CCGAAAGTACTTGGCTTTTA-ATGTGT--CCGGTAGT-T--CAAACACAGACACA-TC--TGCCCACCCCTGTAAA-TA-A------TGCA-AGTACC---A--AACCTGTTGATGGAAA---------CCAAA-TCACCAAC--TTATGC-CCAAC-TATTACAATGCACGTCA-CACCATGTCCTTTC--TACCCTAGAA-TGCA-GG-TT-ACCCATTTTCTGCAAACAGTGCGG-A--G-C-AA---ACACCC-ACAAGCCAACTGC-AAC--GAAGCCA-TCCAGCAA-TATTCAAACTA--GGC-CCTCGCCAA-TCAAACATTTAAC-TC-CTT-TGCA-T-CCCATTTGCAAGGTTATCATG-A----T-TC-C-TTTTTATTTT
gi|10 : -AGGAGAAC-CCGATCGGAAGT-GCAACCAGAACGA-CCTGCATC--AGTTGC-----ACCTGCCCT--TTTTTCA-CT-ACCAC
gi|10 : C-AGTACCACCTCCCC--TAGCCAC-GTGGA--GCT-AGACAGCG-GATGGCCTGTG------TCAA---------GTC---AGCCA-G-GGTGAGCA--CTTTA--ACCCTTTGATTAAT-TTAA----AA-G-T-TTACCAGTCTC-CCAT-TTCCCGGCAAA--CAAGCTGCCACAATCTAT-T-TGGGGGTC-ATATCCCCAccttgttgtgcaatcttgttatttccactccaaccggccagaggatgtcactacgacgtgaatcgcatcagtaccacctcccctagccacgtggagctagacagcggatggcctgtgtcaagtcagccagggtgagcactttaaccctttgattaatttaaaagtttaccagtctcccatttcccggcaaacaagctgccacaatctatttgggggtcatatcccca
gi|12 : aggagaacccgatcggaagtgcaaccagaacgacctgcatcagttgcacctgcccttttttcactaccacccttgttgtgcaatcttgttatttccactccaaccggccagaggatgtcactacgacgtgaatcgcatTCAAGATTATATTTGAT-TTCATAT-CAAATAG-T-CC-AAATTAATTTTG------------G-A-----TG-GTGTTTATTTCA-TT----TAAA-TTCTTA---TTGTCATTGTGAGAATCATCAGT-ACAGA----TT-CTCA----ATTCT--------GA-CATAT-TCA-GATTTA-GCCAG-AGTTATATCGGTACA---AC-TT-G-ATTAATTTCCAACACTGGAA-GCGGC-AGTC--AT---AAGGCTT-T-TACACTTGGACCAACCA-C--TT---
gi|13 : TAT--TTGAT-TTC-TAT-CAAATAG-T-CC-GA-TTAATTTTG------------TTT-----TG-GT--T-ACCCCTGTT----TTAA-C-C--A---TTACT----------TCA--GTT-TGAAAATCTTT-AGTATGATAATTCATTTACCCGA-CTCGTCTAA-AATGTA-ACACG-AGATATATC-GTACG---ACATT-ATTTTGATTCC--ACACCGGA
gi|14 : CAGTAAAGTTCAGAGTTCAAAATTCTCCCAACGTGA-GTTGG-TCAATCATTA-TTGACCTCTCCG-GCTGCTACTCAGAGAG-ACTCCTGACGCA--TTTAA-ACCACCAAACTTATGCGGAGTTCCAAGGTGTT-GACTGTGCTAAATTCGA-AA-TAG--A-GACCACAAATT-AT--GTTCAA--CTAAAgcatgattttaagctgttaccgctgactaaaggttgc
gi|15 : ATAG-T-CC-AAAT-AATTTTG------------TTCCCGTCTG-TT--TTACCCCC-TT----TCAG-C-CAG----TCATC----------TCAT-GGT-ACAGAT---TT-ACCA----AATTC--------GA-CCCGT-TCT-AATTTA-GCGCG-AGTCATATCGGTACGA--AC-TT-A-TTTAATTCATAACACCCGGAAGCAACAAGCTACAC---A--GTTTG--TACA--TG--CCGACTA-C--tgctag
gi|16 : AACACAGACACC-TC--TGCCCACCCCTGTAAG-TA-AATTGAATGCA-ATTAGC---G--AATTTGCTGATGTCAA---------C-AAA-TCACCA-C--TTA-GTTGCAAC-TACTACAATGCACGT-A-CACCGTGTCCTTTT--TACCCTA-AA-TGCA-GGTTT-AGCCATTTT-TGCAAACAGTGCGGTG--G-C-AA---aat
gi|17 : GAGAT-ATCAGAT----TGGC------------AGC------T---GCCAG-GTT---CAACTATTG-GT-TT-A-GCTATG-ACGAGCAATT-CCGCCTC-A--GAATCGCTAGCC-A--GCC-ACAC-C-TGTCATAGGGCA--TTAT-T-AA--CCAAGAAT-TGTGGCTATTGTACATTT--C
gi|18 : aaaatattgtcATATTCTCATTAAG-C------GTCAGA-TCTT------G-GA-AA--G-TCATT--TTA-TGGATCT-TCC--CCTGCT--AGCCAAAT-CCATTG--CAAAACTTGAT-AC-----A---T-T---GACTCCCATAG---C-AGTC-TGC-AAATTCA--AA-T-GGCA-GCCTGTGCACC-Ataata
gi|19 : ACCTCTC---GCTGCT--TCTAAAAT-CCGCCT--CAGA--TCTAA-AC-----AATTT-T---GAGCCCCAGGG---T-GATT-TAC-AAATTCGC-AG-T-GGCA-GATTGTGTATC-AT--G--CAAC-CTAAACaaattcacct
gi|2 : TAT--TTGAG-TTTATAT-CGATTAGGTGCC-AAAT-AATTTTG------------TTC-----TG-TC--TTACCGCT-TA----TCAG-C-CTGA---TCATC----------TCA--GG--ACAGA----TTTACCA----A-TTC--------GA-CCCGTCTAA-AATTTA-GCGCGGAGTTATATCGGTCCG---AC-TTTG-CTTAATTCT-GACACCGGAAG--AAC-A-CT--AC---A--GTT-GTATACA--TG--CCGACTA-CA-TT---TGCCTGATTTTCTTCTCGGGTCAATCCAGTCGACAATCCATCATGCTGT------TTTTCACACA-AA-TTCATCACT-A-TGCCAT-C--CACTAG-AA-ACGGCTTC--GATGAACG-AAGCGTTCCGAAACGC-GCCAAACAGACAATGGTCAACACCTTTCCCGGGGGAAGGGGTGTTAGG-AG-AG-CC-CCGTGCGG-GGC-GCAGCCAGAGCGT-CCTGCGGA--GGTTGT-----GCATG-CCC--TTTTCCCTC--ACTCTTACCCAGACGTTTCCAGTTCGGACTC-GACGACAGT-CAACAC-AGCTG-C-CGGCGGTGGCCA-CTCCCGA-CCAGTCG--CC-------CCGGCCTC-GCT---GCCAGGTATTACCTCCCCGCTAGCCACTGTGGC--G-T-CCACA----GAGGACACGTT------TTCA---------G-C---AGGCA-GAGGTGAGTA--CTT--C-ACC---TGAT---TATTAATTATAC---CATTACGAGT-CCTCGGTCTTATCAGCATAATC-AGTTGTCACGATCGAA-T-T-GGGGTC-ATATCCCC--TAAA-CTCA-AGGTC-AAATCGT--------GA-G---G-GCAGT--TCAGTCGACGCGTCT--GCTGC---TCTTTAAT-CCCACT--CGGA--TTTAA-AC-----AATTT-T---G-GTCCCAGGC---C---TT-CAC-AAATTCGC-AATTGGTTA-GATTGTG-ATC-AT--GC-CAACTCTAAACCTAATT-CA-TTTTG--CTATTGAAAAGTGGACATCTGCT-T-C-TTCAGT-TTTTT-----CA-GC-TTA-TCGATCGAGAAACATGTTCACAAAGCACAA-CA--TG-CTTAAGTAC-TC-AGGGAT--TTCGCC----TAGC------------AGC------TAG-GC-AG-GTCT-GC-ACC--TG-GT-ACGA-AGT-TG--TGAAC-AT--TCGCT---A-CGTAAGTCT-GCCTGCCACCAACAC---T-TCGTGGGGCG--AAATGC-AATGGCG-CAGT--CTGCCTTTTGTATGTGC--CCGGTAGT-T--CACACA-AGACACA-TC--TG-CCACCCCTGTAAATTA-A------TGCA-AGTACC---AAGAAACTGC----GTGAA---------CCAAGATCACC-AC--T---GT--CAAC---TTATAATG-ACGT-A--ACCATGTCCTTTCG-TA-CCTA-AA-TGCA-GT-TTCCACCATTCT-TGCAAAC-GTGCGG-AAGG-C-AA---ACACCC-ACAGA--GACTGCGAACAAGAAGCCA-TCCAGC-A-TATTT-AACTAAGGCC-CCTCGCCAATTC-AACA-TTAAC-T--CTA-AGCA-TACCCATTTGCAAGGTTATCATA-T----TCTA-A-TTTTGATTTt
gi|20 : GATTAT--TTGAT-TTTATAT-CAAATAG-T-CC-AAATTAATTTTG------------TTC-----TGCGT--TTACCCCC-TT----TCAG-C-CTGA---TCATC----------TCA--AGT-ACAGA----TT-ACCA----AATTC--------GA-CCCGTCgttgggtttacttccggtt
gi|21 : AGA----TT-ACCA----AATTC--------GA-CCCGTCT-A-AATTTA-ACGCG-AGTCATATCGATACG---AC-TT-A-TTCAATT-CTAACATCTGAA-GCAAC-AGCT--AC---A--GTTTGT-TACA--TG--CC
gi|22 : AACACCGGAAG-CAAC-AGCT--AC---A--GTTTGT-TAAA--TG--CCGACTA-CAATT---TGCCTGTTTTT--TCTCG--CCA-TCCA-TCGA------ATC-T-----------------------------TCATT-A-TGCCAT-C--CACTAG-AA-AC
gi|23 : TATCGCTT--A-CGCAAGGCT-CTC-A-CACT-TCATAT-T-TCGAGGGGAG--GGGT-T-AATACTGAG
gi|24 : gcagGGTTAT--TTGAT-TTTATAT-CATATAG-T-CCAAAATTGATTTTG------------TTT-----TGTGT--TTtnattggtcattg
gi|3 : ---TGCTTGATTAA--TCTTGT-CAA-TCCA-TCGACA-TCCATC-TGCTGT------TTTTC-TACA-AA-T-CATCACTGA-TGCCAT-CTCCACTAG-AAGACG-CTTC--GACGAACG-A-ACGTCTTAAACCGCCGCCGG-CAGACAATGGTTA-CACTTTTCCCGGGGGAAGGGGG-TCAGG-AGGAGACCACCGATTGGAG-C-GCAGCCAGAGCGTTCCTTCG-A--GGTTGT-----GCCTGCCCC--TTTTTACGCTTACCACTACCCAGACG-TTC-AG-TCGGACTCAGACGAC-CA-AAACACCAGCCG-T-CAGCGTGGGCCAGCTCCCGGGCCAGTC---CT-------CCTGCCTCCGTT---GCT-GG-ATTACC----CCCTACC-A--GTGGA--G-T-CCACA----GAGG-CACGTAATTTTTTCAAAGGGGGGGGGCCCAAGGGCA-G-GAAAAGTATACTTCACCACC---TGAT---T-TTAA-TATAC-A-CATTACAA-TCCCTCTGT-CTATCAGC-TA--CAAGTTGCCACGATC-AAAT-TGGG----AATAGCCCCAATAA--CTCA--GGTCAAAATCT-------G-GA-G---G-ACAGT--GCA-TC-ACCTCTAC---CTGCT--TCTGAAAT-CCGT-T--CGAA--TTTAAGAC-----AATAT-T---GAGTCCCAGGG---CAGACT-TAC-AAGTTCGC-AA-TTGGCA-GAT-GTGCATC-AC-----CAAC-CTAAACCTAATTTCACTTTTGCTCTATTGAAAAGTGGACATTTCCT-T-C-TA-GGT-TTT---AC-C-A-GCATTA-T-------------TGTTCACAAAGCACAT-CAACTGGCTTAAGTACATT-AGGGAT-ATTCGCC----TACC------------A--------CTA-GC-AG-GTCTG-CACCC--TGTGTTAC-A-AGTATGGATGAGCAAT-ATCGC--AGA-CGTAAGGCT-GCT-G-CACC-ATAT-C-T-TCAATGGGTG--AAAT-CGAATGC---GAGTACTGGGCTT--GTATGTGT--CCGGTAGT-TTTCAA-CACAGACACA-TC--TGCCCACCCCTGTAAG-TA-A------TTCACAGTACC---A--CACCTGTTGA-AACAA---------CCAAA-TTACC-AC--TTA-TT-GCAGC-TATTATATTTGACGT-ACCGCCATGTCCGTTCCATATCCCA-AA-TGCA-GT-TT-AACCATATT-T---AACAGTGCGG-AG-G-CAAA---ACACCCGACAAACCACATGC-AAC-ATGAACCA-TCCA--AATTATTCAAACTAT-GCC-CCTCGTCAA-TCGAATAGTTAAC-TCGCTTAAGCATT-CCCATTTGCAAGGTTATCATGAA----TCTA-A-TTTTTATTCT
gi|4 : AATTGTAAATAACAAAGT---GTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CAAATAG-T-AC-AAATTAATTTTGGAGGGTGTTTACTTC--------AT--CTATCTAC-TTACGGTCAG-C-C-GAGAATCATC---------------GGT-ATGGA----TC-CTCA----ATTTT--------GA-CACATTTTA---TTTA-GACAG-GGTTATATCGGTACG---AC-TT-G-TTTAATTTCCAACAACGGAAG-CAAC-AGTC--AC---ACGGCTT-T-TACACTTG--G-GACTA-A--ATATATGCCAAATCTA--TTTCCTACCA-TCCA-TCGTCA-TCCGGC-GG-TAT------TTATC-CTCGTAA-T-CACTACC-AATGTCAC-C--CACCAA-AA---G-TTCCAAGATGAATG-A-GCGTCC-AAAACACAGTCGG-CAGACGATGGACA-CACCTT-CCTGGGGAAGGGGGGGTCAGG-AGGAGACC-CCGACCGGAGGC-GCAGTCACAGCGC-CCTGCAGA--GGTTGC-----GCCTGCCCCCTTTTTTCCTCC-ACC------CAGACG-GTCCAG-TCCTACTTTGACGACGCT-CAACCC-AGCCCTC-CAGCGGTGGTCCGCGCTCAG-CCAGTCGTTCCTCATCTTCCTGCCTT-GTT---GCC-TGCTTTACCTCCCCCA-ACCCAC-GTGGA--G-T---GTA-CT-GAGGGCACGTG------TCAA---------GCC---AGGCA-G-TGTGAGTA--TTTCAC-ACC----G-----T-TTAA-TATACTG-CATTACGAGTCC-TCTGT-TTACCAGCATA--CAAGTTGTCACGATC-AA-C-TTGGGGACCATATCCCCACCAAA-CGCA-AGGTCAAAATCTA------G-GAAG---G-TCAGT--TCA-TAGACCTCTC---GCTGCT--TCTAAAAT-CCGCCT--CGGA--TTTAA-AA-----CATTT-T---GAGTCCCAGGG---T-GACT-TAC-AAATCTGC-AA-TGG-CA-GATTGTGCATC-AT--T--CATC-CTAAACCTAATA-CAATTTTGC-CTATCGAAAAGTGGACATCTACC-T-CCTT-AGT-CTTT--AC-T-A-GCATCA-T-GTTTGAAAAACATGTCCACAAAGCACAG-CAAATA-CTTAAGTATTTT-CGGGAA-ATTCGCC----TAGC------------AGC------TT--GT-AG-GTCTG-CAACT--TG-GT-AC-A-TGTATG-ACGAGCAAT-ATCGCTTA---CGTAAGGCT-GCC-A-CACC-CCAT-ACT-TCGTGGGGTG--AACT-C-AATACTGAA--TAC-TGGCTTTTGTATGTGT--CCGGTAGT-T--CAA-CACAGACACC-CC--TGCCCCCTCCCGCTAG-TA-A------------------------ATCTGCTGATGTTGAGTAATCACCCCAAG-TCACCAAtggtttactttccggtttttgtcttcaatatttagccacggggggctcgggaatcccacatctcaaaagcacaaaacaaaaacatgacaatagcaagtgaataattagtaaagaatcggggcttcaaagggtttgctggccatttaaaaattcacccctcgttaatctacaagttcccctt
gi|5 : accatgctcttcggtgTTATATCGGTACG---GC-TT-G-TTTAATTTCCAACACCGGAA-GCGAC-GGTC--ACAAGA--ATT--T-TACACTTG---GGACTAGA--TT---TGCCAAATCTA--TATTTTACCA-TCCA-TCGACA-TCCAt
gi|5 : CCCAGACG-TCCCTT-TCCGACTCTGACGACTCT-CAGCCC-AGCCA-TTCGGTGGTGACCCGCTCTCAG-CCAGTTG--TT-------TCTGCCTT-GTT---GCC-TGCATTATCTCCCCC-TACCCAC-TTGGA--G-T-CTAC---T-GAGGCCATGTG------TCAA---------GCC---AGGTA-G-GGTAATCA--TTTCAC-ACC---TGAG---G-TTAA-TACACCGTCTTTA-GAGTCC-TCTGT-TTATAAGCATA--CAAGTTGTCACGATC-AA-CGTGGGGATCAA-ATTCTCACCAAA-CTCA-AGGTCCAAATCCG------G-CACT---G-TCATT--GTA-TAGACCTAT-C--GCTGCT--TCTAAAAT-CCGCCT--CAGA--TTTAA-AT-----AATTT-T---GAGTCCCAGGG---T-GATT-TAC-AAATTCGC-AG-T-GGCA-TGTTGTGTATC-AT--G--CAAC-CTAATCTTAATA-CATTCTTGT-CTATCgcggcatttatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccagacgtccctttccgactctgacgactctcagcccagccattcggtggtgacccgctctcagccagttgtttctgccttgttgcctgcattatctccccctacccacttggagtctactgaggccatgtgtcaagccaggtagggtaatcatttcacacctgaggttaatacaccgtctttagagtcctctgtttataagcatacaagttgtcacgatcaacgtggggatcaaattctcaccaaactcaaggtccaaatccggcactgtcattgtatagacctatcgctgcttctaaaatccgcctcagatttaaataattttgagtcccagggtgatttacaaattcgcagtggcatgttgtgtatcatgcaacctaatcttaatacattcttgtctatc
gi|6 : ttatatcggtacggcttgtttaatttccaacaccggaagcgacggtcacaagaattttacacttgggactagatttgccaaatctatattttaccatccatcgacatccagcggcatttatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngATCTGCT-TTC-TT-AGT-TTTATTCC-CCACGCATTAAT-GCTCGAGC--CATGTTCACCGGGCACACACCACTG-CTCA-GT-CATCCAGGGCTTATAAGCCACCCCAGCGTCACAACATCCAGCCCCTTTTTA-GC-CG-GT-TGCCA--C--TG-GC-TC-ACAGTATG-CTGAGCAATTATCGCTAC-A-CGTA-GGCT-GCT-G-GCCC-CCAC-T-T-TCGTGGGGCGCCACAT-C-A-TGCCGC-AGT--CTGGCTTTTGTCTGT-C--CCGGTAGTGT--CA--CACCGACACAATC--TGCCCCACCCTGTA---TACA------TGCA-AGTCCCCCCA-----CTGCTCATGC--A---------CCACA-CCTCCCCC--TTA-GT-GCACCCTCTTACTAC-CACGT-C-CCCC-TGTCCTTTC--TACCT----A-TGCACGG-TT-CCCC-TTCT-TGCACACAGTGC------G-C-AAGGCACACCC-CCCACCACACTGC---C-CGCAGCCACTCCAGCCA-TATTC-ACCTC--GGC-CATCGCC-A-TC-ACCA-TTCACATC-CTC-CGCA-T-CCCCTTTGC-AGGTTATCAC--ATCCTTCTACATTTTTTATTT
gi|7 : tTCTTGT-CTATCGAAAAATGGACATCTCCCCT-C-TT-AGT-ATTT--AC-TTA--CATCA-T-GCTTAAAAAACATGCCCACAAAGCATAT-CAAATA-TCAAAGTACATC-AAGAAT-AATCACC----TAGT------------GGC-------TA-GC-AG-GTCT-GCAACT--TG-GT-AC-A-AGTATG-gttgtttacttccggttttcgttcttcaaccatatttaggaccacgggggggctgagcactcccacactccagcatcacccacctgccacagacgcgcgtgaattagttcaggacagtcgggcttccatcgggtgctggcaccactttcatttctccccccctcgttaaactaacccagtttctcttt
gi|7 : CCCCTTTAAG-TA-A------TGCA-ATTAGC---A--GATCTGCTGAT----A---------CCAAG-CAATCAACCCTTA-GTTGTAAC-TATTACAATGCAAGT-A-AATCATGTCCTTTC--TACCCCA-AA-TGCA-GGCTT-ATCCATTCT-TACAAACAGTGCGG-AG-G-C-AA---ACACCG-ATAATTCAACTGC-AACAAGAAACCA-TCCAGCAA-CATTCAAACTA--GACTCCTTGCAGA-TC-Annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcccctttaagtaatgcaattagcagatctgctgataccaagcaatcaacccttagttgtaactattacaatgcaagtaaatcatgtcctttctaccccaaatgcaggcttatccattcttacaaacagtgcggaggcaaacaccgataattcaactgcaacaagaaaccatccagcaacattcaaactagactccttgcagatcac
gi|8 : tcttgtctatcgaaaaatggacatctcccctcttagtatttacttacatcatgcttaaaaaacatgcccacaaagcatatcaaatatcaaagtacatcaagaataatcacctagtggctagcaggtctgcaacttggtacaagtatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntA-CG-GATGGCCCGTG------TCAA---------GTC---AGCTA-G-GGTGA---------AC-AC-------T---T-TT-------------TTACCAGTATCTCT----TACCAGCA-A--CAAACTGTCACAATCTAC-T-TGGGGGTCA-TATCTCCAGTAAA-CTCA-AGTTCAAAATCTA------G-GA-G---GGTCTAT--TTA-TTGACCTCTC---GCTGCT--ACTCAAAT-CTTCCT--CGGA--TTTAA-AC-----AGTTT-C---GAGTCCCAGGG---T-GACT-TGC-ATATTCGA-AA-TGGA-A-AATTTTGTTTA-AC--T--AAAT-CTAAACCCAA---CATTTTTTCAGTATCGAAAAGTGGACATCCGCT-T-------GTCTTCTTTACTTTA-GCATCT-T-GCTGGAAAAGTATGCCCACAAGACTTAA-GAATTG-CTCAAc
gi|9 : ttggagcgagaca--TG-GT-AC-A-AGCACG-ATGAGCAAT-ATCGTTTA---CGCAAGGCC-CTC-A-CACT-TCAT-ACT-TCGAGGAGAG--GGGT-T-AATACTGAGCATA---GGCTACTATATGTGTTACC--TAAT-----AAAC-TA-ACATA-TCCCTGTACAGCCCGTTTGG-TA-A------TACA---------------TCTTTTGACGTTGG---------TAAAG-TCTCCC-C--TTGCGG-GCAG--TAATACAATGCAGGT-T-AATCATGAACGTTC--TACC--A-AACTGCA-GG-TTTAGCCATTCT-TGCAAACGGTGAGG-A--GGC-AA---ACACCC-ACAATCCACCTGC-A--------CCA-CTAAGCAA-T--TCAAACCC--GTC-CCTCGCCAG-TT-AACA-TTAAC-TT-TTT-AGCG-T-CACATTTGCAGGGtatcgttttgcacccagc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GAAGTCAGGCTCCACAGGGTTGCTGAACCATTTAAAAGTCCAACTCTTGTTAAATTACAAGTTTCCCCCTTGGCCTCGTTCCAATGAAATATGGCGATGTGTACCTGATACACCATCTTTCTTACCCTGAACATAACTCGGCCAACACCATTATCGACCCTAGAGTTTGTTCTATTACCTATTCCAGTATTGACCAAGATCAAGCCGCGAGTATGATTTCCCTCTCGGGAAAGAATTCACTATTAGCCAAGTCAGA
Alignments
lowQualScore : 11 222 22222 1 22222222222222222222222 1111 111111 2222222222 11 1111 1111 11111111 111 11 1 11 1111 22 1111 111 111 11 222222 11111111111 11 1 11 111 1 1 1 1111 22222 11 11 1111 111 22222222222 111 11 111 2222 111111 222222222 111 111111111111 22222 222222 111 2222222222222222 1111 11111 11111 1 22222 11 11 22222222 1111 4444444444444444444444444 11 22 222222 1 11 222 222 1111 111111 22222222222222 222222222222222 11 11111 1111 11 1 1 2222 111 222222 11 1 1 11 3333333 111
lowQualScore : 1 88 1 000 22222 5 77 5 5 5 5 5 3 88888888888888888888888 66 5 2222 5 5 333333 5555555555 33 5 5555 5 0000 3 88888888 5 4 7777 5 5 333 5 888 2 9 99 0 66 888 33 1111 77 66 6666 000 000 77 6 6 6 8888 333333 1 22222222222 1 8 8 8 11 8 88 0 33 3 111 77 8 0 3 0 5 2 8 0 8 0 8 8 1111 00000 11 5 11 5 8 8 8 3333 0 8 222 0 8 66666666666 0 8 444 77 4 11 6 99 6 000 4444 5 666666 222222222 1 000 5 5 88888 3 5 444444444444 77 99999 0 6 5 3 77 000000 4 111 222 2 5 0 55 0 5555555555555555 5 0 66 5 1 1 9999 66 1 4 1 66 66 4 11111 4 777 11111 4 4 55 4 1 77 4 3 4 11111 5 1 00 6 33 1 5 888 5 5 44444444 5 5 5 1 0 1 66 3 5 5 3 6 5 2222 0000000000000000000000000 5 5 99 1 66 5 5 5 5 777 11 333333 0 0 888 11 000 5 0 0 66 1 666 5 2 777 777 0 0 77 5555 99 5 77 5 5 444444 55555555555555 1 999999999999999 5 55 77 33333 5 11 3333 0 33 555 5 5 1 1 1 5 0 1111 5 5 000 6 22 333333 1 6 3 6 7 55 1 6 1 6 3 6 8 11 99 8 8 0 5555555 2 777
lowQualScore : . .. . ... ..... . .. . . . . . . ....................... .. . .... . . ...... .......... .. . .... . .... . ........ . . .... . . ... . ... . . .. . .. ... .. .... .. .. .... ... ... .. . . . .... ...... . ........... . . . . .. . .. . .. . ... .. . . . . . . . . . . . . .... ..... .. . .. . . . . .... . . ... . . ........... . . ... .. . .. . .. . ... .... . ...... ......... . ... . . ..... . . ............ .. ..... . . . . .. ...... . ... ... . . . .. . ................ . . .. . . . .... .. . . . .. .. . ..... . ... ..... . . .. . . .. . . . ..... . . .. . .. . . ... . . ........ . . . . . . .. . . . . . . .... ......................... . . .. . .. . . . . ... .. ...... . . ... .. ... . . . .. . ... . . ... ... . . .. .... .. . .. . . ...... .............. . ............... . .. .. ..... . .. .... . .. ... . . . . . . . .... . . ... . .. ...... . . . . . .. . . . . . . . .. .. . . . ....... . ...
lowQualScore : 0 00 0 555 00000 0 99 7 7 0 0 0 2 55555555555555555555555 99 7 1111 7 7 999999 0000000000 66 7 6666 0 6666 6 11111111 0 5 1111 7 7 888 0 000 2 6 55 0 99 888 88 0000 22 99 4444 000 222 00 7 7 7 8888 000000 0 44444444444 0 0 0 0 00 0 88 0 88 2 000 22 8 0 2 0 5 5 0 8 0 8 0 0 8888 00000 00 6 88 6 0 0 8 2222 6 0 444 6 0 66666666666 6 0 000 77 2 88 7 22 7 222 0000 3 444444 999999999 7 000 7 7 99999 0 7 444444444444 11 11111 7 6 7 9 99 000000 3 777 111 8 0 1 11 1 2222222222222222 0 2 99 0 0 1 1111 11 0 4 9 11 11 4 11111 4 888 11111 4 4 66 4 2 66 4 7 4 22222 0 0 33 0 11 7 7 666 7 7 99999999 7 7 7 7 4 4 77 0 7 0 5 7 7 1111 7777777777777777777777777 7 7 33 4 99 0 0 0 0 999 88 666666 4 0 000 00 999 0 8 2 99 0 000 4 2 999 444 1 7 99 0000 99 7 99 0 0 444444 99999999999999 0 111111111111111 0 55 99 77777 7 44 9999 1 66 999 7 7 4 4 0 7 1 6666 7 7 000 7 00 777777 5 7 2 7 3 88 0 7 7 7 3 0 0 22 00 0 0 8 2222222 5 000
consensus : AATTNTAAATAACAAANTCCTGTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CAAATAG-T-CC-AAATTAATTTTG------------TTC-----TG-GT--TTACCCCC-TT----TCAG-C-CTGA---TCATC----------TCA--GGT-ACAGA----TT-ACCA----AATTC--------GA-CCCGTCTNA-AATTTA-GCGCG-AGTTATATCGGTACG---AC-TT-G-TTTAATTCCCAACACCGGAAGGCAAC-AGCT--AC---A--GTTTGT-TACACTTG--CCGACTA-C--TT---TGCCTGATTTN--TCTCGTACCA-TCCA-TCGACA-TCCATC-TGCTGT------TTTTC-CACA-AA-T-CATCACT-A-TGCCAT-C--CACTAG-AA-ACG-CTTC--GATGAACG-A-GCGTCCCAAAACGCCGCCGG-CAGACAATGGTCA-CACCTTTCCCGGGGGAGGGGGGGTCAGG-AGGAGACC-CCGATCGGAGGC-GCAGCCAGAGCGT-CCTGCGGA--GGTTGC-----GCCTGCCCC--TTTTTCCTCT-ACCACTACCCAGACG-TTCCAG-TCGGACTCNGACGACNCT-CAACAC-AGCCG-C-CGGCGGTGGCCAGCTCCCGG-CCAGTCG--CC-------CCTGCCTC-GTT---GCC-GGTATTACCTCCCCCCTACCCAC-GTGGA--G-T-CCACA-CT-GAGGGCACGTG------TCAA---------GCC---AGGCA-G-GGTGAGTA--CTTCAC-ACC---TGAT---T-TTAA-TATAC-G-CATTACGAGTCCCTCTGT-TTACCAGCATA--CAAGTTGTCACGATC-AA-T-TGGGGGTCAATATCCCCANTAAA-CTCA-AGGTCAAAATCTT------G-GA-G---G-TCAGT--TCA-TNGACCTCTCC--GCTGCT--TCTNAAAT-CCGCCT--CGGA--TTTAA-AC-----AATTT-T---GAGTCCCAGGG---C-GACT-TAC-AAATTCGC-AA-TGGGCA-GATTGTGCATC-AT--G--CAAC-CTAAACCTAATT-CATTTTTGC-CTATCGAAAAGTGGACATCTGCT-T-C-TT-AGT-TTTTTTAC-CCA-GCATCA-T-GCTCGAGAAACATGTCCACAAAGCACAN-CAACTG-CTTAAGTACATC-AGGGAT-ATTCGCC----TAGC------------AGC------TTA-GC-AG-GTCTGGCAACC--TG-GT-AC-A-AGTATG-ACGAGCAATTATCGCTTA-A-CGTAAGGCT-GCC-G-CACC-NCAC-N-T-TCGTGGGGCG--AAAT-C-AATGCCGAGAGTACCTGGCTTTTGTATGTGT--CCGGTAGT-T--CAAACACAGACACA-TC--TGCCCACCCCTGTAAG-TA-A------TGCA-AGTACC---A--AATCTGCTGATGTCGA---------CCAAG-TCACCAAC--TTA-GT-GCAAC-TATTACAATGCACGT-A-CACCATGTCCTTTC--TACCCTA-AA-TGCA-GG-TT-ANCCATTCT-TGCAAACAGTGCGG-A--G-C-AA---ACACCC-ACAANCCAACTGC-AAC-AGAAGCCA-TCCAGCAA-TATTCAAACTA--GNC-CCTCGCCAA-TC-AACA-TTAAC-TC-CTT-AGCA-T-CCCATTTGCAAGGTTATCATG-A----TCTA-A-TTTTTATTTT
Reference ( family-2916 ) : AATTNTAAATAACAAANTCCTGTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CAAATAG-T-CC-AAATTAATTTTG------------TTC-----TG-GT--TTACCCCC-TT----TCAG-C-CTGA---TCATC----------TCA--GGT-ACAGA----TT-ACCA----AATTC--------GA-CCCGTCTNA-AATTTA-GCGCG-AGTTATATCGGTACG---AC-TT-G-TTTAATTCCCAACACCGGAAGGCAAC-AGCT--AC---A--GTTTGT-TACACTTG--CCGACTA-C--TT---TGCCTGATTTN--TCTCGTACCA-TCCA-TCGACA-TCCATC-TGCTGT------TTTTC-CACA-AA-T-CATCACT-A-TGCCAT-C--CACTAG-AA-ACG-CTTC--GATGAACG-A-GCGTCCCAAAACGCCGCCGG-CAGACAATGGTCA-CACCTTTCCCGGGGGAGGGGGGGTCAGG-AGGAGACC-CCGATCGGAGGC-GCAGCCAGAGCGT-CCTGCGGA--GGTTGC-----GCCTGCCCC--TTTTTCCTCT-ACCACTACCCAGACG-TTCCAG-TCGGACTCNGACGACNCT-CAACAC-AGCCG-C-CGGCGGTGGCCAGCTCCCGG-CCAGTCG--CC-------CCTGCCTC-GTT---GCC-GGTATTACCTCCCCCCTACCCAC-GTGGA--G-T-CCACA-CT-GAGGGCACGTG------TCAA---------GCC---AGGCA-G-GGTGAGTA--CTTCAC-ACC---TGAT---T-TTAA-TATAC-G-CATTACGAGTCCCTCTGT-TTACCAGCATA--CAAGTTGTCACGATC-AA-T-TGGGGGTCAATATCCCCANTAAA-CTCA-AGGTCAAAATCTT------G-GA-G---G-TCAGT--TCA-TNGACCTCTCC--GCTGCT--TCTNAAAT-CCGCCT--CGGA--TTTAA-AC-----AATTT-T---GAGTCCCAGGG---C-GACT-TAC-AAATTCGC-AA-TGGGCA-GATTGTGCATC-AT--G--CAAC-CTAAACCTAATT-CATTTTTGC-CTATCGAAAAGTGGACATCTGCT-T-C-TT-AGT-TTTTTTAC-CCA-GCATCA-T-GCTCGAGAAACATGTCCACAAAGCACAN-CAACTG-CTTAAGTACATC-AGGGAT-ATTCGCC----TAGC------------AGC------TTA-GC-AG-GTCTGGCAACC--TG-GT-AC-A-AGTATG-ACGAGCAATTATCGCTTA-A-CGTAAGGCT-GCC-G-CACC-NCAC-N-T-TCGTGGGGCG--AAAT-C-AATGCCGAGAGTACCTGGCTTTTGTATGTGT--CCGGTAGT-T--CAAACACAGACACA-TC--TGCCCACCCCTGTAAG-TA-A------TGCA-AGTACC---A--AATCTGCTGATGTCGA---------CCAAG-TCACCAAC--TTA-GT-GCAAC-TATTACAATGCACGT-A-CACCATGTCCTTTC--TACCCTA-AA-TGCA-GG-TT-ANCCATTCT-TGCAAACAGTGCGG-A--G-C-AA---ACACCC-ACAANCCAACTGC-AAC-AGAAGCCA-TCCAGCAA-TATTCAAACTA--GNC-CCTCGCCAA-TC-AACA-TTAAC-TC-CTT-AGCA-T-CCCATTTGCAAGGTTATCATG-A----TCTA-A-TTTTTATTTT
gi|1 : AATTCTAAATAA--AATTCCTGTTT--TG-AAT-ATAATCAGGATTAT--TTGATGTTTATATTCAAA-AG-T-CC-AAATTAATTTTG------------TTC-----CG-GT--TTACCCCC-TT----TCAGGC-CTGA---TCATC----------TCA--GGTTACAGA----TT-ACCA----AATTC--------GAACCCGTCTTACAATTTATGCGCG-AGTCATATCG-TACGGGAAC-TT-A-TTTAATTCTAAACACCGGAAGGCAACCAGCT--AC---A--GTTTGT-TACA--TG--CCGACTA-C--TT---TGCCTGATTTT--TCTCGT-TCA-TCCA-TCGACA-TCCATC-TGCTGTGTTTTATTTTC-CACA-AAAT-CTTCACT-A-TGC-ATGC--CACTAGGAA-ACG-CTTC--G-TGAACGGA-ACGTTTCCAAACGTCGCCGA-CAGCCA-TGGTCA-CACCTT-CCCGGGGAAGGGGGGGTTAGGGAGGAGACC-CCGATCGGAGGTTGCGGCCATAGCGT-CCTGCGGAAGGGTTGTTGTTTGCCTGCCCC--TTTTCCCTCT-ACCACTACCCAAACG-TTTCAG-TCGGACCCAGACGACTCAACAACAC-AGCCG-C-CGGCGGTGGCCAGCTCCCGA-CCAGTCG--CC-------CCGGCCTC-GTTTGGGCC-GGTATTACCTCCCCCTTACCCAC-GTGGGCGG-TTCCCCA-CTTGAGGACACGTT------TCAT---------GCC---AGGCAAG-GGTGA-TA--CTTCAC-ACC---TGAT---T-TTAA-TATACCA-CATTACGAGTCCTTCTGT-TTATCAGCACA--CAAGTTGTCACGATC-AA--------------ATCCCCAATAAA-CTCA-AGGTCAAAATCTT------G-GA-G---G-CCAGT--TCA-TTGACCTCTTCCGGCTGCT--TCTTAAATTCCACCT--CGGA--TT-AA-AC-----AATTT-T---GAG-CCCAAGG---C-GACT-TAC-AAATTCGCCAA-CGGGTAAGATTGTGCATCCATTTG--CAAC-CTAAAC-TAATT-CATTTTTGC-CTAT--GAAAGTGGACATCTGCT-T-C-TT-AGT-TTTTTTAC-CCA-GCATTA-T-GCTCGAGAAACATGTTCATCGAGAAATT-CAAC-G-CTTA-GTACATC-AGG-AT-ATTCGCC----TAGC------------AGC------TTAAGC-AGTGTCTGGCAACC--TG-GT-AC-A-AGTATG-ATGAGCA-TT-TCGCCTA-AACGTAAGGCTGGCT-G-CACCAACAC-A-C-GCGTGGGGCG--AAAT-C-AAT-CCGAAAGTACTTGGCTTTTA-ATGTGT--CCGGTAGT-T--CAAACACAGACACA-TC--TGCCCACCCCTGTAAA-TA-A------TGCA-AGTACC---A--AACCTGTTGATGGAAA---------CCAAA-TCACCAAC--TTATGC-CCAAC-TATTACAATGCACGTCA-CACCATGTCCTTTC--TACCCTAGAA-TGCA-GG-TT-ACCCATTTTCTGCAAACAGTGCGG-A--G-C-AA---ACACCC-ACAAGCCAACTGC-AAC--GAAGCCA-TCCAGCAA-TATTCAAACTA--GGC-CCTCGCCAA-TCAAACATTTAAC-TC-CTT-TGCA-T-CCCATTTGCAAGGTTATCATG-A----T-TC-C-TTTTTATTTT
gi|10 : -AGGAGAAC-CCGATCGGAAGT-GCAACCAGAACGA-CCTGCATC--AGTTGC-----ACCTGCCCT--TTTTTCA-CT-ACCAC
gi|10 : C-AGTACCACCTCCCC--TAGCCAC-GTGGA--GCT-AGACAGCG-GATGGCCTGTG------TCAA---------GTC---AGCCA-G-GGTGAGCA--CTTTA--ACCCTTTGATTAAT-TTAA----AA-G-T-TTACCAGTCTC-CCAT-TTCCCGGCAAA--CAAGCTGCCACAATCTAT-T-TGGGGGTC-ATATCCCCAccttgttgtgcaatcttgttatttccactccaaccggccagaggatgtcactacgacgtgaatcgcatcagtaccacctcccctagccacgtggagctagacagcggatggcctgtgtcaagtcagccagggtgagcactttaaccctttgattaatttaaaagtttaccagtctcccatttcccggcaaacaagctgccacaatctatttgggggtcatatcccca
gi|12 : aggagaacccgatcggaagtgcaaccagaacgacctgcatcagttgcacctgcccttttttcactaccacccttgttgtgcaatcttgttatttccactccaaccggccagaggatgtcactacgacgtgaatcgcatTCAAGATTATATTTGAT-TTCATAT-CAAATAG-T-CC-AAATTAATTTTG------------G-A-----TG-GTGTTTATTTCA-TT----TAAA-TTCTTA---TTGTCATTGTGAGAATCATCAGT-ACAGA----TT-CTCA----ATTCT--------GA-CATAT-TCA-GATTTA-GCCAG-AGTTATATCGGTACA---AC-TT-G-ATTAATTTCCAACACTGGAA-GCGGC-AGTC--AT---AAGGCTT-T-TACACTTGGACCAACCA-C--TT---
gi|13 : TAT--TTGAT-TTC-TAT-CAAATAG-T-CC-GA-TTAATTTTG------------TTT-----TG-GT--T-ACCCCTGTT----TTAA-C-C--A---TTACT----------TCA--GTT-TGAAAATCTTT-AGTATGATAATTCATTTACCCGA-CTCGTCTAA-AATGTA-ACACG-AGATATATC-GTACG---ACATT-ATTTTGATTCC--ACACCGGA
gi|14 : CAGTAAAGTTCAGAGTTCAAAATTCTCCCAACGTGA-GTTGG-TCAATCATTA-TTGACCTCTCCG-GCTGCTACTCAGAGAG-ACTCCTGACGCA--TTTAA-ACCACCAAACTTATGCGGAGTTCCAAGGTGTT-GACTGTGCTAAATTCGA-AA-TAG--A-GACCACAAATT-AT--GTTCAA--CTAAAgcatgattttaagctgttaccgctgactaaaggttgc
gi|15 : ATAG-T-CC-AAAT-AATTTTG------------TTCCCGTCTG-TT--TTACCCCC-TT----TCAG-C-CAG----TCATC----------TCAT-GGT-ACAGAT---TT-ACCA----AATTC--------GA-CCCGT-TCT-AATTTA-GCGCG-AGTCATATCGGTACGA--AC-TT-A-TTTAATTCATAACACCCGGAAGCAACAAGCTACAC---A--GTTTG--TACA--TG--CCGACTA-C--tgctag
gi|16 : AACACAGACACC-TC--TGCCCACCCCTGTAAG-TA-AATTGAATGCA-ATTAGC---G--AATTTGCTGATGTCAA---------C-AAA-TCACCA-C--TTA-GTTGCAAC-TACTACAATGCACGT-A-CACCGTGTCCTTTT--TACCCTA-AA-TGCA-GGTTT-AGCCATTTT-TGCAAACAGTGCGGTG--G-C-AA---aat
gi|17 : GAGAT-ATCAGAT----TGGC------------AGC------T---GCCAG-GTT---CAACTATTG-GT-TT-A-GCTATG-ACGAGCAATT-CCGCCTC-A--GAATCGCTAGCC-A--GCC-ACAC-C-TGTCATAGGGCA--TTAT-T-AA--CCAAGAAT-TGTGGCTATTGTACATTT--C
gi|18 : aaaatattgtcATATTCTCATTAAG-C------GTCAGA-TCTT------G-GA-AA--G-TCATT--TTA-TGGATCT-TCC--CCTGCT--AGCCAAAT-CCATTG--CAAAACTTGAT-AC-----A---T-T---GACTCCCATAG---C-AGTC-TGC-AAATTCA--AA-T-GGCA-GCCTGTGCACC-Ataata
gi|19 : ACCTCTC---GCTGCT--TCTAAAAT-CCGCCT--CAGA--TCTAA-AC-----AATTT-T---GAGCCCCAGGG---T-GATT-TAC-AAATTCGC-AG-T-GGCA-GATTGTGTATC-AT--G--CAAC-CTAAACaaattcacct
gi|2 : TAT--TTGAG-TTTATAT-CGATTAGGTGCC-AAAT-AATTTTG------------TTC-----TG-TC--TTACCGCT-TA----TCAG-C-CTGA---TCATC----------TCA--GG--ACAGA----TTTACCA----A-TTC--------GA-CCCGTCTAA-AATTTA-GCGCGGAGTTATATCGGTCCG---AC-TTTG-CTTAATTCT-GACACCGGAAG--AAC-A-CT--AC---A--GTT-GTATACA--TG--CCGACTA-CA-TT---TGCCTGATTTTCTTCTCGGGTCAATCCAGTCGACAATCCATCATGCTGT------TTTTCACACA-AA-TTCATCACT-A-TGCCAT-C--CACTAG-AA-ACGGCTTC--GATGAACG-AAGCGTTCCGAAACGC-GCCAAACAGACAATGGTCAACACCTTTCCCGGGGGAAGGGGTGTTAGG-AG-AG-CC-CCGTGCGG-GGC-GCAGCCAGAGCGT-CCTGCGGA--GGTTGT-----GCATG-CCC--TTTTCCCTC--ACTCTTACCCAGACGTTTCCAGTTCGGACTC-GACGACAGT-CAACAC-AGCTG-C-CGGCGGTGGCCA-CTCCCGA-CCAGTCG--CC-------CCGGCCTC-GCT---GCCAGGTATTACCTCCCCGCTAGCCACTGTGGC--G-T-CCACA----GAGGACACGTT------TTCA---------G-C---AGGCA-GAGGTGAGTA--CTT--C-ACC---TGAT---TATTAATTATAC---CATTACGAGT-CCTCGGTCTTATCAGCATAATC-AGTTGTCACGATCGAA-T-T-GGGGTC-ATATCCCC--TAAA-CTCA-AGGTC-AAATCGT--------GA-G---G-GCAGT--TCAGTCGACGCGTCT--GCTGC---TCTTTAAT-CCCACT--CGGA--TTTAA-AC-----AATTT-T---G-GTCCCAGGC---C---TT-CAC-AAATTCGC-AATTGGTTA-GATTGTG-ATC-AT--GC-CAACTCTAAACCTAATT-CA-TTTTG--CTATTGAAAAGTGGACATCTGCT-T-C-TTCAGT-TTTTT-----CA-GC-TTA-TCGATCGAGAAACATGTTCACAAAGCACAA-CA--TG-CTTAAGTAC-TC-AGGGAT--TTCGCC----TAGC------------AGC------TAG-GC-AG-GTCT-GC-ACC--TG-GT-ACGA-AGT-TG--TGAAC-AT--TCGCT---A-CGTAAGTCT-GCCTGCCACCAACAC---T-TCGTGGGGCG--AAATGC-AATGGCG-CAGT--CTGCCTTTTGTATGTGC--CCGGTAGT-T--CACACA-AGACACA-TC--TG-CCACCCCTGTAAATTA-A------TGCA-AGTACC---AAGAAACTGC----GTGAA---------CCAAGATCACC-AC--T---GT--CAAC---TTATAATG-ACGT-A--ACCATGTCCTTTCG-TA-CCTA-AA-TGCA-GT-TTCCACCATTCT-TGCAAAC-GTGCGG-AAGG-C-AA---ACACCC-ACAGA--GACTGCGAACAAGAAGCCA-TCCAGC-A-TATTT-AACTAAGGCC-CCTCGCCAATTC-AACA-TTAAC-T--CTA-AGCA-TACCCATTTGCAAGGTTATCATA-T----TCTA-A-TTTTGATTTt
gi|20 : GATTAT--TTGAT-TTTATAT-CAAATAG-T-CC-AAATTAATTTTG------------TTC-----TGCGT--TTACCCCC-TT----TCAG-C-CTGA---TCATC----------TCA--AGT-ACAGA----TT-ACCA----AATTC--------GA-CCCGTCgttgggtttacttccggtt
gi|21 : AGA----TT-ACCA----AATTC--------GA-CCCGTCT-A-AATTTA-ACGCG-AGTCATATCGATACG---AC-TT-A-TTCAATT-CTAACATCTGAA-GCAAC-AGCT--AC---A--GTTTGT-TACA--TG--CC
gi|22 : AACACCGGAAG-CAAC-AGCT--AC---A--GTTTGT-TAAA--TG--CCGACTA-CAATT---TGCCTGTTTTT--TCTCG--CCA-TCCA-TCGA------ATC-T-----------------------------TCATT-A-TGCCAT-C--CACTAG-AA-AC
gi|23 : TATCGCTT--A-CGCAAGGCT-CTC-A-CACT-TCATAT-T-TCGAGGGGAG--GGGT-T-AATACTGAG
gi|24 : gcagGGTTAT--TTGAT-TTTATAT-CATATAG-T-CCAAAATTGATTTTG------------TTT-----TGTGT--TTtnattggtcattg
gi|3 : ---TGCTTGATTAA--TCTTGT-CAA-TCCA-TCGACA-TCCATC-TGCTGT------TTTTC-TACA-AA-T-CATCACTGA-TGCCAT-CTCCACTAG-AAGACG-CTTC--GACGAACG-A-ACGTCTTAAACCGCCGCCGG-CAGACAATGGTTA-CACTTTTCCCGGGGGAAGGGGG-TCAGG-AGGAGACCACCGATTGGAG-C-GCAGCCAGAGCGTTCCTTCG-A--GGTTGT-----GCCTGCCCC--TTTTTACGCTTACCACTACCCAGACG-TTC-AG-TCGGACTCAGACGAC-CA-AAACACCAGCCG-T-CAGCGTGGGCCAGCTCCCGGGCCAGTC---CT-------CCTGCCTCCGTT---GCT-GG-ATTACC----CCCTACC-A--GTGGA--G-T-CCACA----GAGG-CACGTAATTTTTTCAAAGGGGGGGGGCCCAAGGGCA-G-GAAAAGTATACTTCACCACC---TGAT---T-TTAA-TATAC-A-CATTACAA-TCCCTCTGT-CTATCAGC-TA--CAAGTTGCCACGATC-AAAT-TGGG----AATAGCCCCAATAA--CTCA--GGTCAAAATCT-------G-GA-G---G-ACAGT--GCA-TC-ACCTCTAC---CTGCT--TCTGAAAT-CCGT-T--CGAA--TTTAAGAC-----AATAT-T---GAGTCCCAGGG---CAGACT-TAC-AAGTTCGC-AA-TTGGCA-GAT-GTGCATC-AC-----CAAC-CTAAACCTAATTTCACTTTTGCTCTATTGAAAAGTGGACATTTCCT-T-C-TA-GGT-TTT---AC-C-A-GCATTA-T-------------TGTTCACAAAGCACAT-CAACTGGCTTAAGTACATT-AGGGAT-ATTCGCC----TACC------------A--------CTA-GC-AG-GTCTG-CACCC--TGTGTTAC-A-AGTATGGATGAGCAAT-ATCGC--AGA-CGTAAGGCT-GCT-G-CACC-ATAT-C-T-TCAATGGGTG--AAAT-CGAATGC---GAGTACTGGGCTT--GTATGTGT--CCGGTAGT-TTTCAA-CACAGACACA-TC--TGCCCACCCCTGTAAG-TA-A------TTCACAGTACC---A--CACCTGTTGA-AACAA---------CCAAA-TTACC-AC--TTA-TT-GCAGC-TATTATATTTGACGT-ACCGCCATGTCCGTTCCATATCCCA-AA-TGCA-GT-TT-AACCATATT-T---AACAGTGCGG-AG-G-CAAA---ACACCCGACAAACCACATGC-AAC-ATGAACCA-TCCA--AATTATTCAAACTAT-GCC-CCTCGTCAA-TCGAATAGTTAAC-TCGCTTAAGCATT-CCCATTTGCAAGGTTATCATGAA----TCTA-A-TTTTTATTCT
gi|4 : AATTGTAAATAACAAAGT---GTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CAAATAG-T-AC-AAATTAATTTTGGAGGGTGTTTACTTC--------AT--CTATCTAC-TTACGGTCAG-C-C-GAGAATCATC---------------GGT-ATGGA----TC-CTCA----ATTTT--------GA-CACATTTTA---TTTA-GACAG-GGTTATATCGGTACG---AC-TT-G-TTTAATTTCCAACAACGGAAG-CAAC-AGTC--AC---ACGGCTT-T-TACACTTG--G-GACTA-A--ATATATGCCAAATCTA--TTTCCTACCA-TCCA-TCGTCA-TCCGGC-GG-TAT------TTATC-CTCGTAA-T-CACTACC-AATGTCAC-C--CACCAA-AA---G-TTCCAAGATGAATG-A-GCGTCC-AAAACACAGTCGG-CAGACGATGGACA-CACCTT-CCTGGGGAAGGGGGGGTCAGG-AGGAGACC-CCGACCGGAGGC-GCAGTCACAGCGC-CCTGCAGA--GGTTGC-----GCCTGCCCCCTTTTTTCCTCC-ACC------CAGACG-GTCCAG-TCCTACTTTGACGACGCT-CAACCC-AGCCCTC-CAGCGGTGGTCCGCGCTCAG-CCAGTCGTTCCTCATCTTCCTGCCTT-GTT---GCC-TGCTTTACCTCCCCCA-ACCCAC-GTGGA--G-T---GTA-CT-GAGGGCACGTG------TCAA---------GCC---AGGCA-G-TGTGAGTA--TTTCAC-ACC----G-----T-TTAA-TATACTG-CATTACGAGTCC-TCTGT-TTACCAGCATA--CAAGTTGTCACGATC-AA-C-TTGGGGACCATATCCCCACCAAA-CGCA-AGGTCAAAATCTA------G-GAAG---G-TCAGT--TCA-TAGACCTCTC---GCTGCT--TCTAAAAT-CCGCCT--CGGA--TTTAA-AA-----CATTT-T---GAGTCCCAGGG---T-GACT-TAC-AAATCTGC-AA-TGG-CA-GATTGTGCATC-AT--T--CATC-CTAAACCTAATA-CAATTTTGC-CTATCGAAAAGTGGACATCTACC-T-CCTT-AGT-CTTT--AC-T-A-GCATCA-T-GTTTGAAAAACATGTCCACAAAGCACAG-CAAATA-CTTAAGTATTTT-CGGGAA-ATTCGCC----TAGC------------AGC------TT--GT-AG-GTCTG-CAACT--TG-GT-AC-A-TGTATG-ACGAGCAAT-ATCGCTTA---CGTAAGGCT-GCC-A-CACC-CCAT-ACT-TCGTGGGGTG--AACT-C-AATACTGAA--TAC-TGGCTTTTGTATGTGT--CCGGTAGT-T--CAA-CACAGACACC-CC--TGCCCCCTCCCGCTAG-TA-A------------------------ATCTGCTGATGTTGAGTAATCACCCCAAG-TCACCAAtggtttactttccggtttttgtcttcaatatttagccacggggggctcgggaatcccacatctcaaaagcacaaaacaaaaacatgacaatagcaagtgaataattagtaaagaatcggggcttcaaagggtttgctggccatttaaaaattcacccctcgttaatctacaagttcccctt
gi|5 : accatgctcttcggtgTTATATCGGTACG---GC-TT-G-TTTAATTTCCAACACCGGAA-GCGAC-GGTC--ACAAGA--ATT--T-TACACTTG---GGACTAGA--TT---TGCCAAATCTA--TATTTTACCA-TCCA-TCGACA-TCCAt
gi|5 : CCCAGACG-TCCCTT-TCCGACTCTGACGACTCT-CAGCCC-AGCCA-TTCGGTGGTGACCCGCTCTCAG-CCAGTTG--TT-------TCTGCCTT-GTT---GCC-TGCATTATCTCCCCC-TACCCAC-TTGGA--G-T-CTAC---T-GAGGCCATGTG------TCAA---------GCC---AGGTA-G-GGTAATCA--TTTCAC-ACC---TGAG---G-TTAA-TACACCGTCTTTA-GAGTCC-TCTGT-TTATAAGCATA--CAAGTTGTCACGATC-AA-CGTGGGGATCAA-ATTCTCACCAAA-CTCA-AGGTCCAAATCCG------G-CACT---G-TCATT--GTA-TAGACCTAT-C--GCTGCT--TCTAAAAT-CCGCCT--CAGA--TTTAA-AT-----AATTT-T---GAGTCCCAGGG---T-GATT-TAC-AAATTCGC-AG-T-GGCA-TGTTGTGTATC-AT--G--CAAC-CTAATCTTAATA-CATTCTTGT-CTATCgcggcatttatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccagacgtccctttccgactctgacgactctcagcccagccattcggtggtgacccgctctcagccagttgtttctgccttgttgcctgcattatctccccctacccacttggagtctactgaggccatgtgtcaagccaggtagggtaatcatttcacacctgaggttaatacaccgtctttagagtcctctgtttataagcatacaagttgtcacgatcaacgtggggatcaaattctcaccaaactcaaggtccaaatccggcactgtcattgtatagacctatcgctgcttctaaaatccgcctcagatttaaataattttgagtcccagggtgatttacaaattcgcagtggcatgttgtgtatcatgcaacctaatcttaatacattcttgtctatc
gi|6 : ttatatcggtacggcttgtttaatttccaacaccggaagcgacggtcacaagaattttacacttgggactagatttgccaaatctatattttaccatccatcgacatccagcggcatttatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngATCTGCT-TTC-TT-AGT-TTTATTCC-CCACGCATTAAT-GCTCGAGC--CATGTTCACCGGGCACACACCACTG-CTCA-GT-CATCCAGGGCTTATAAGCCACCCCAGCGTCACAACATCCAGCCCCTTTTTA-GC-CG-GT-TGCCA--C--TG-GC-TC-ACAGTATG-CTGAGCAATTATCGCTAC-A-CGTA-GGCT-GCT-G-GCCC-CCAC-T-T-TCGTGGGGCGCCACAT-C-A-TGCCGC-AGT--CTGGCTTTTGTCTGT-C--CCGGTAGTGT--CA--CACCGACACAATC--TGCCCCACCCTGTA---TACA------TGCA-AGTCCCCCCA-----CTGCTCATGC--A---------CCACA-CCTCCCCC--TTA-GT-GCACCCTCTTACTAC-CACGT-C-CCCC-TGTCCTTTC--TACCT----A-TGCACGG-TT-CCCC-TTCT-TGCACACAGTGC------G-C-AAGGCACACCC-CCCACCACACTGC---C-CGCAGCCACTCCAGCCA-TATTC-ACCTC--GGC-CATCGCC-A-TC-ACCA-TTCACATC-CTC-CGCA-T-CCCCTTTGC-AGGTTATCAC--ATCCTTCTACATTTTTTATTT
gi|7 : tTCTTGT-CTATCGAAAAATGGACATCTCCCCT-C-TT-AGT-ATTT--AC-TTA--CATCA-T-GCTTAAAAAACATGCCCACAAAGCATAT-CAAATA-TCAAAGTACATC-AAGAAT-AATCACC----TAGT------------GGC-------TA-GC-AG-GTCT-GCAACT--TG-GT-AC-A-AGTATG-gttgtttacttccggttttcgttcttcaaccatatttaggaccacgggggggctgagcactcccacactccagcatcacccacctgccacagacgcgcgtgaattagttcaggacagtcgggcttccatcgggtgctggcaccactttcatttctccccccctcgttaaactaacccagtttctcttt
gi|7 : CCCCTTTAAG-TA-A------TGCA-ATTAGC---A--GATCTGCTGAT----A---------CCAAG-CAATCAACCCTTA-GTTGTAAC-TATTACAATGCAAGT-A-AATCATGTCCTTTC--TACCCCA-AA-TGCA-GGCTT-ATCCATTCT-TACAAACAGTGCGG-AG-G-C-AA---ACACCG-ATAATTCAACTGC-AACAAGAAACCA-TCCAGCAA-CATTCAAACTA--GACTCCTTGCAGA-TC-Annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcccctttaagtaatgcaattagcagatctgctgataccaagcaatcaacccttagttgtaactattacaatgcaagtaaatcatgtcctttctaccccaaatgcaggcttatccattcttacaaacagtgcggaggcaaacaccgataattcaactgcaacaagaaaccatccagcaacattcaaactagactccttgcagatcac
gi|8 : tcttgtctatcgaaaaatggacatctcccctcttagtatttacttacatcatgcttaaaaaacatgcccacaaagcatatcaaatatcaaagtacatcaagaataatcacctagtggctagcaggtctgcaacttggtacaagtatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntA-CG-GATGGCCCGTG------TCAA---------GTC---AGCTA-G-GGTGA---------AC-AC-------T---T-TT-------------TTACCAGTATCTCT----TACCAGCA-A--CAAACTGTCACAATCTAC-T-TGGGGGTCA-TATCTCCAGTAAA-CTCA-AGTTCAAAATCTA------G-GA-G---GGTCTAT--TTA-TTGACCTCTC---GCTGCT--ACTCAAAT-CTTCCT--CGGA--TTTAA-AC-----AGTTT-C---GAGTCCCAGGG---T-GACT-TGC-ATATTCGA-AA-TGGA-A-AATTTTGTTTA-AC--T--AAAT-CTAAACCCAA---CATTTTTTCAGTATCGAAAAGTGGACATCCGCT-T-------GTCTTCTTTACTTTA-GCATCT-T-GCTGGAAAAGTATGCCCACAAGACTTAA-GAATTG-CTCAAc
gi|9 : ttggagcgagaca--TG-GT-AC-A-AGCACG-ATGAGCAAT-ATCGTTTA---CGCAAGGCC-CTC-A-CACT-TCAT-ACT-TCGAGGAGAG--GGGT-T-AATACTGAGCATA---GGCTACTATATGTGTTACC--TAAT-----AAAC-TA-ACATA-TCCCTGTACAGCCCGTTTGG-TA-A------TACA---------------TCTTTTGACGTTGG---------TAAAG-TCTCCC-C--TTGCGG-GCAG--TAATACAATGCAGGT-T-AATCATGAACGTTC--TACC--A-AACTGCA-GG-TTTAGCCATTCT-TGCAAACGGTGAGG-A--GGC-AA---ACACCC-ACAATCCACCTGC-A--------CCA-CTAAGCAA-T--TCAAACCC--GTC-CCTCGCCAG-TT-AACA-TTAAC-TT-TTT-AGCG-T-CACATTTGCAGGGtatcgttttgcacccagc
blockSeqs : G CA G . AACGT C AT . . G G A T GAGGGTGTTTACTTC GT G ACGG . T GAGAA ATTGTGAGAA TC . ATCT T TGAT T ATTTACCC . C CAG . G A A AT T C AG A AC AAG AG GTA CT GA CAA ATA TCT GG A G A ATGC . T ACACAAATT A G A . TC . GA G AA A AA CG C A A A T G . A . T TC . CT T TT A T T A AGT C TC G TTCCTCATCTT C . AG T GC T . C AG GCG G ATTTTT AGGGGGGGG T CAA . A GTATA T C CTTTGATTAAT TT CGTCT C C A AT TATT G GGT AAT G G GA TCCCAACGTGAGTTG G CA G T C CCG AC G . T GA AC G CACCA A GCG TGTT G T A T A GC . A . GTT T C TT C CT T C CC C C TTTACTTT C A C C A CA C G A A C T ACCC GTCACAACATCCAGCCCCTTTTTA C . GC A AT T T G C GAT TA CTCA A TGC AA AT G CC T GC G C AGA ACT TA TTT AA A CC T C ATTGAA AGTACCAAGA T TGTTGAGTAATCACC A AA CC GTTG C GC ACC CA TA C C T C G . AAG G A GGC G AC GAACAA A C A T A AG C T A T G G A CG AA T A ATCCT C CAT
blockSeqs : . . . . . . T TTCCCGTCTG . . . . . TTA . T . T . . A . . C AAA . . . . TG C T G . . . CG TGT CT . CA . T TA . . . TGC . T CTCGTAAT A . . . . . A . . A A TA A . A . T G . . . . GA . . G T C . . T GCT . TT . CC . . A T CC . . . CC CT A . . C . . . GCA C . TGATTA T TGCA C . T . GAAT G GGT CAT T . A TGGAAA . . . G C CC . C . A . . . . . . CA . . C . G GC . C . GC . C T A CA T . TC . . ATTCCCC . . . T A A A . A T . . . AGCTAG . . G A . . . . . AC TA TACA . A A AC . . A CG A C AGC TG . GT CA . . . . . AGTCCCCCCA A TGTCAA . CC . GTTG . TG AC G TA . . C T A . TG . . . . CC AACAA G . C . A T C . A . . . . C A . . GAA C A
blockSeqs : . . . . . . T TTCTGC . . . . . TGA . . . . . . A . . C CTA . . . . G C T G . . . . TGT CT . GA . A TA . . . GG . A TACAAAT A . . . . . A . . A A A . . A . . . . . . . GA . . T C A . . T TCT . C . CT . . G C CA . . . CC CG G . . C . . . GTA C . TGATT T ACA C . T . AAAT T GGA AT A . A AGGAAG . . . C G CT . A . G . . . . . . C . . C . T TT . T . G . C A T C C . C . . TACTT . . . C A T C . A A . . . AGCTT . . G C . . . . . AC T TTA . A T AC . . G T G T CA AC . T AA . . . . . CAGTACCAC C CGTTGG . AA . CGGG . GC CC . CA . . . . A . AG . . . . TT AACA C . A . A . G . G . . . . T C . . AT C A
blockSeqs : . . . . . . T TTTTGT . . . . . TGA . . . . . . A . . C AAA . . . . A C C G . . . . TT . . C . A T . . . T . . . . . . . . . . . . . . A . . . . . . . . CA . T . TT . . T C C . . . CT T C . . C . . . GTA C . TGAGG T GT C . T . AACG G GAT AT C . A GGCACT . . . C C AC . T . C . . . . . . T . . C . G GC . C . T . T A T T C . C . . TACT . . . T A G A . A A . . . GGCTA . . G A . . . . . CT A AGA . G A C . . A T A T GA C . T A . . . . . ATTAGCGA T GTGAA . A . TTG . GC AA . CA . . . . C . AG . . . . TC CC A . A . . . A . A . . . . . A . .
blockSeqs : . . . . . . T TTTTG . . . . . AG . . . . . . A . . T AA . . . . A T C G . . . . TG . . C . A . . . . T . . . . . . . G . . T . . . TCA . . GT . CA . . T . TACT G GGT AA C . A AGGAG . . . A C C . G . G . . . . . . C . . C . G GC . C . G . C . . T C . C . . TTC . . . G . T T . A . . . . AGCT . . G A . . . . . AT A TTA . A C C . . A C G C AA C . . A . . . . . ATTAGCAG T AACAA . A . GTG . G TA . A . . . . T . A . . . . A A . . . . . . T . . . .
blockSeqs : . . . . . . . TTCTG . . . . . A . . . . . . T . . . TA . . . . G T . G . . . . TT . . A . . . . . . . . . . . . TT . . . . . . AAC . . AT G . . TGAG . . . A A C . A . G . . . . . . T . . C . . C . T . T . . C . . . . ACC . . . . . A . . . . . ACTA . . . . . . . . . T A TTA . G C T . . C C A T CA A . . . . . . . . T TGCA . A . GT . C A . . . . . . G . . . . .
blockSeqs : . . . . GATG . . . . . . . . . . G . . G . . . . T . . . . . GGAG . . . T C C . A . G . . . . . . T . . A . . A . T . . . . . . . . . TA . A T . . . G T . . . . . . . TA . C
blockSeqs : . C . C . T . . . . . . T . . . . . . . . .
blockSeqCons : NAA* *** G* TGT* TA TG** ****** GA** ***** NCT* *** ** CC* C*** GCA** CG*** NANT** GGT AT* NGGAAG********** C*** C* N**** TACTC*** AGCTA******************** G* TTA*** N* NA* AC* ATACG********* TGTCGA********* A* NN** CA* AG** AACA**
originalCons : AATTNTAAATAACAAANTCCTGTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CAAATAG-T-CC-AAATTAATTTTG------------TTC-----TG-GT--TTACCCCC-TT----TCAG-C-CTGA---TCATC----------TCA--GGT-ACAGA----TT-ACCA----AATTC--------GA-CCCGTCTNA-AATTTA-GCGCG-AGTTATATCGGTACG---AC-TT-G-TTTAATTCCCAACACCGGAAGGCAAC-AGCT--AC---A--GTTTGT-TACACTTG--CCGACTA-C--TT---TGCCTGATTTN--TCTCGTACCA-TCCA-TCGACA-TCCATC-TGCTGT------TTTTC-CACA-AA-T-CATCACT-A-TGCCAT-C--CACTAG-AA-ACG-CTTC--GATGAACG-A-GCGTCCCAAAACGCCGCCGG-CAGACAATGGTCA-CACCTTTCCCGGGGGAGGGGGGGTCAGG-AGGAGACC-CCGATCGGAGGC-GCAGCCAGAGCGT-CCTGCGGA--GGTTGC-----GCCTGCCCC--TTTTTCCTCT-ACCACTACCCAGACG-TTCCAG-TCGGACTCNGACGACNCT-CAACAC-AGCCG-C-CGGCGGTGGCCAGCTCCCGG-CCAGTCG--CC-------CCTGCCTC-GTT---GCC-GGTATTACCTCCCCCCTACCCAC-GTGGA--G-T-CCACA-CT-GAGGGCACGTG------TCAA---------GCC---AGGCA-G-GGTGAGTA--CTTCAC-ACC---TGAT---T-TTAA-TATAC-G-CATTACGAGTCCCTCTGT-TTACCAGCATA--CAAGTTGTCACGATC-AA-T-TGGGGGTCAATATCCCCANTAAA-CTCA-AGGTCAAAATCTT------G-GA-G---G-TCAGT--TCA-TNGACCTCTCC--GCTGCT--TCTNAAAT-CCGCCT--CGGA--TTTAA-AC-----AATTT-T---GAGTCCCAGGG---C-GACT-TAC-AAATTCGC-AA-TGGGCA-GATTGTGCATC-AT--G--CAAC-CTAAACCTAATT-CATTTTTGC-CTATCGAAAAGTGGACATCTGCT-T-C-TT-AGT-TTTTTTAC-CCA-GCATCA-T-GCTCGAGAAACATGTCCACAAAGCACAN-CAACTG-CTTAAGTACATC-AGGGAT-ATTCGCC----TAGC------------AGC------TTA-GC-AG-GTCTGGCAACC--TG-GT-AC-A-AGTATG-ACGAGCAATTATCGCTTA-A-CGTAAGGCT-GCC-G-CACC-NCAC-N-T-TCGTGGGGCG--AAAT-C-AATGCCGAGAGTACCTGGCTTTTGTATGTGT--CCGGTAGT-T--CAAACACAGACACA-TC--TGCCCACCCCTGTAAG-TA-A------TGCA-AGTACC---A--AATCTGCTGATGTCGA---------CCAAG-TCACCAAC--TTA-GT-GCAAC-TATTACAATGCACGT-A-CACCATGTCCTTTC--TACCCTA-AA-TGCA-GG-TT-ANCCATTCT-TGCAAACAGTGCGG-A--G-C-AA---ACACCC-ACAANCCAACTGC-AAC-AGAAGCCA-TCCAGCAA-TATTCAAACTA--GNC-CCTCGCCAA-TC-AACA-TTAAC-TC-CTT-AGCA-T-CCCATTTGCAAGGTTATCATG-A----TCTA-A-TTTTTATTTT
finalCons : AATTNTAAATAACAAANTCCTGTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CAAATAG-T-CC-AAATTAATTTTG------------TTC-----TG-GT--TTACCCCC-TT----TCAG-C-CTGA---TCATC----------TCA--GGT-ACAGA----TT-ACCA----AATTC--------GA-CCCGTCTNAA-ATTTA-GCGCG-AGTTATATCGGTACG---AC-TT-G-TTTAATTCCCAACACCGGAAG-CAAC-AGCT--AC---A--GTTTGT-TACACTTG--CCGACTA-C--TT---TGCCTGATTTN--TCTCGTACCA-TCCA-TCGACA-TCCATCTG--TGT------TTTTC-CACA-AA-T-CATCACT-A-TGCCAT-C--CACTAG-AA-ACG-CTTC--GATGAACG-A-GCGTCCCAAAACGCCGCCGG-CAGACAATGGTCA-CACCTTTCCCGGGGGAGGGGGGGTCAGG-AGGAGACC-CCGATCGGAGGC-GCAGCCAGAGCGT-CCTGCGGA--GGTTGC-----GCCTGCCCC--TTTTTCCTCT-ACCACTACCCAGACG-TTCCAG-TCGGACTCNGACGACNCT-CAACAC-AGCCG-C-CGGCGGTGGCCAGCTCCCGG-CCAGTCG--CC-------CCTGCCTC-GTT---GCC-GGTATTACCTCCCCCCTACCCAC-GTGGA--G-TCC-ACAC---GAGGGCACGTG------TCAA---------GCC---AGGCA-G-GGTGAGCA--CTTCAC-ACC---TGAT---T-TTAA-TATACCG---TTACGAGTCCCTCTGT-TTACCAGCATA--CAAGTTGTCACGATCNANT--TGGGGGTCAT-ATCCCCANTAAA-CTCA-AGGTCAAAATCTNGGAAG----------G-TCAGT--TCA-TNGACCTCTC---GCTGCT--TCTNAAAT-CCGCCT--CGGA--TTTAA-AC-----AATTT-T---GAGTCCCAGGG---C-GACT-TAC-AAATTCGC-AA-TGGGCA-GATTGTGCATC-ATN----CAAC-CTAAACCTAATT-CATTTTTGC-CTATCGAAAAGTGGACATCTGCT-T-C-TT-AGT-TTTTACTC---A-GCATCA-T-GCTCGAGAAACATGTCCACAAAGCACAN-CAACTG-CTTAAGTACATC-AGGGAT-ATTCGCC----TAGCAGCTA--------------------GC-AG-GTCTG-CAACC--TG-GT-AC-A-AGTATG-ACGAGCAATTATCGCTTA---CGTAAGGCT-GCC-G-CACCN-CAC-N-T-TCGTGGGGCG--AAAT-C-AATGCCGNA-GTAC-TGGCTTTTGTATGTGT--CCGGTAGT-T--CAAACACAGACACA-TC--TGCCCACCCCTGTAAG-TA-A------TGCAATACG---------ATCTGCTGATGTCGA---------CCAAG-TCACCA-C--TTA-GT-GCAAC-TATTACAATGCACGTNN--ACCATGTCCTTTC--TACCCCA-AA-TGCA-GG-TT-ANCCATTCT-TGCAAACAGTGCGGAG--G-C-AA---ACACCC-ACAANCCAACTGCAACA--GAAGCCA-TCCAGCAA-TATTCAAACTA--GNC-CCTCGCCAA-TC-AACA-TTAAC-TC-CTT-AGCA-T-CCCATTTGCAAGGTTATCATG-A----TCTA-A-TTTTTATTTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GAAGTCAGGCTCCACAGGGTTGCTGAACCATTTAAAAGTCCAACTCTTGTTAAATTACAAGTTTCCCCCTTGGCCTCGTTCCAATGAAATATGGCGATGTGTACCTGATACACCATCTTTCTTACCCTGAACATAACTCGGCCAACACCATTATCGACCCTAGAGTTTGTTCTATTACCTATTCCAGTATTGACCAAGATCAAGCCGCGAGTATGATTTCCCTCTCGGGAAAGAATTCACTATTAGCCAAGTCAGA
Alignments
lowQualScore : 11 222 22222 1 22222222222222222222222 1111 111111 2222222222 11 1111 1111 11111111 111 1 11 1111 22 1111 111 111 11 22222222222222222222222222222 11 1 11 111 1 1 1 1111 22222 11 11 1111 111 22222222222 111 11 111 333333 111111 222222222 111 1111 11111111111 222222222222 22222222222 1111 11111 11111 1111111 11111 11 11 11 11 1111 222222222222222222222222222 111 111 11111 1 11 22 111111 1111 777777777777777777777777777777 2222222222222 11 1111 111111 111 11 1 222222 11 1 1 11 3333333 111
lowQualScore : 1 88 1 000 22222 5 77 5 5 5 5 5 3 88888888888888888888888 66 5 2222 5 5 333333 5555555555 33 5 5555 5 0000 3 88888888 5 4 7777 5 5 333 5 888 2 9 4 4 0 66 888 33 1111 77 66 6666 000 000 77 6 6 6 99999999999999999999999999999 1 8 8 8 11 8 88 0 33 3 111 77 8 0 3 0 5 2 8 0 8 0 8 8 1111 00000 11 5 11 5 8 8 8 3333 0 8 222 0 8 66666666666 0 8 444 77 4 11 6 99 111 888888 5 666666 222222222 1 000 5 5 3 77 0000 77777777777 5 0 555555555555 0 0 6 1 5 3 77 1 6 0 5 2 5 0 55 3 5 1 11111111111 0 66 5 1 4 4 4444 66 1 4 1 66 66 4 11111 4 777 11111 4 4 55 4 7777777 4 6 4 11111 5 00 6 33 1 5 33 5 00 77 77 1 999 5 5 5 1 0 1 66 3 5 3 6 5 2222 999999999999999999999999999 5 5 1 000 5 5 5 5 5 22 5 555 11111 5 0 888 11 00 5 0 0 66 1 666 5 888888 5555 5 1 0 77 99 88888 5 77 5 5 666666666666666666666666666666 2 3333333333333 00 5555 333333 5 11 999 0 33 6 4 5 5 5 7 5 1 5 0 5 5 5 6 22 333333 1 6 999 7 55 1 6 1 6 3 6 8 11 99 8 8 0 5555555 2 777
lowQualScore : . .. . ... ..... . .. . . . . . . ....................... .. . .... . . ...... .......... .. . .... . .... . ........ . . .... . . ... . ... . . . . . .. ... .. .... .. .. .... ... ... .. . . . ............................. . . . . .. . .. . .. . ... .. . . . . . . . . . . . . .... ..... .. . .. . . . . .... . . ... . . ........... . . ... .. . .. . .. ... ...... . ...... ......... . ... . . . .. .... ........... . . ............ . . . . . . .. . . . . . . . .. . . . ........... . .. . . . . .... .. . . . .. .. . ..... . ... ..... . . .. . ....... . . . ..... . .. . .. . . .. . .. .. .. . ... . . . . . . .. . . . . . .... ........................... . . . ... . . . . . .. . ... ..... . . ... .. .. . . . .. . ... . ...... .... . . . .. .. ..... . .. . . .............................. . ............. .. .... ...... . .. ... . .. . . . . . . . . . . . . . . .. ...... . . ... . .. . . . . . . . .. .. . . . ....... . ...
lowQualScore : 0 00 0 555 00000 0 99 7 7 0 0 0 2 55555555555555555555555 99 7 1111 7 7 999999 0000000000 66 7 6666 0 6666 6 11111111 0 5 1111 7 7 888 0 000 2 6 4 4 0 99 888 88 0000 22 99 4444 000 222 00 7 7 7 11111111111111111111111111111 0 0 0 0 00 0 88 0 88 2 000 22 8 0 2 0 5 5 0 8 0 8 0 0 8888 00000 00 6 88 6 0 0 8 2222 6 0 444 6 0 66666666666 6 0 000 77 2 88 7 22 777 555555 3 444444 999999999 7 000 7 7 0 99 9999 99999999999 7 1 999999999999 7 7 6 4 7 9 99 0 6 7 3 8 0 1 11 2 0 0 66666666666 2 99 0 0 4 4 0000 11 0 4 9 11 11 4 11111 4 888 11111 4 4 66 4 9999999 4 4 4 11111 0 33 0 11 7 7 66 7 77 99 99 4 777 7 7 7 7 4 4 77 0 7 5 7 7 1111 666666666666666666666666666 7 7 4 999 0 0 0 0 0 99 0 444 99999 0 0 000 00 99 0 8 2 99 0 000 4 000000 4444 0 9 7 99 22 88888 7 99 0 0 999999999999999999999999999999 0 5555555555555 44 6666 777777 7 44 000 1 66 6 0 7 7 7 1 7 0 7 1 7 7 7 7 00 777777 5 7 000 3 88 0 7 7 7 3 0 0 22 00 0 0 8 2222222 5 000
consensus : AATTNTAAATAACAAANTCCTGTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CAAATAG-T-CC-AAATTAATTTTG------------TTC-----TG-GT--TTACCCCC-TT----TCAG-C-CTGA---TCATC----------TCA--GGT-ACAGA----TT-ACCA----AATTC--------GA-CCCGTCTNA-AATTTA-GCGCG-AGTTATATCGGTACG---AC-TT-G-TTTAATTCCCAACA-CCGGAAG-CAAC-AGCT--AC---A--GTTTGT-TACACTTG--CCGACTA-C--TT---TGCCTGATTTN--TCTCGTACCA-TCCA-TCGACA-TCCATC-TGC--TGTTTT----TC-CACA-AA-T-CATCACT-A-TGCCAT-C--CACTAG-AA-ACG-CTTC--GATGAACG-A-GCGTCCCAAAACGCCGCCGG-CAGACAATGGTCA-CACCTTTCCCGGGGGAGGGGGGGTCAGG-AGGAGACC-CCGATCGGAGGC-GCAGCCAGAGCGT-CCTGCGGA--GGTTGC-----GCCTGCCCC--TTTTTCCTCT-ACCACTACCCAGACG-TTCCAG-TCGGACTCNGACGACNCT-CAACAC-AGCCG-C-CGGCGGTGGCCAGCTCCCGG-CCAGTCG--CC-------CCTGCCTC-GTT---GCC-GGTATTACCTCCCCCCTACCCAC-GTGG--AGT---CCACAT----GAGGGCACGTG------TCAA---------GCC---AGGC-AG-GGTGAGCA--CTTCAC-ACC---TGATT---TTAA-TATAC--CG--T---T-ACGAGTCCCTCTGT-TTACCAGCATA--CAAGTTGTCACGATCAACTTGGGGGTCATATCCCCANTAAA-CTCA-AGGTCAAAAT-CTNGGAA--------GGTCAGT--TCA-TNGAC-C-TCTC---GCTGCT--TCTNAAA-TCCGCCT--CGGA--TTTAA-AC-----AATTT-T---GAGTCCCAGGG---C-GACT-TAC-AAATTCG-CAA-TGG-----GC-AGATTGTGCAT-CA--T-NCAAC-CTAAACCTAATT-CATTTTTGC-CTATCGAAAAGTGGACATCTG-CT--T-CTT-AG--TTTT--TAC-TCA-GCATCA-T-GCTCGAGAAACATGTCCACAAAGCACAN-CAACTG-CTTAAGTACATC-AGGGAT-ATTCGCC----TAGC------------AGC-------T--A-GCAG-GTCT-GCAACC--TG-G-TAC-A-AGTAT-GACGAGCAATTATCGCT-T--ACGTAA-GGCT-GCC-G-CACC-NCACACT-TCGTGGGGCG--AAAT-C-AATGCC--G-AAGT-AC-T-GGCTTTTGTATGTGT--CCGGTAG--T-TCAAACACAGACACA-T--CTGCCCACCCCTGTAAG-TA-A------T--GCAAG---T--ACCA--NA-TCTGCTGATGTCGA---------CCAAG-TCACC----ACTTA-G-T-GCAAC-TATTACAATGCACGT-NCACCATGTCCTTTC--TACCCCA-AA-TGCA-GG-TT-ANCCATTCT-TGCAAACAGTGCG-G-AGGC-AAACACCC-ACAANCCAACTGC-AAC-AGAAGCCA-TCCAGCAA-TATTCAAACTA--GNC-CCTCGCCAA-TC-AACA-TTAAC-TC-CTT-AGCA-T-CCCATTTGCAAGGTTATCATG-A----TCTA-A-TTTTTATTTT
Reference ( family-2916 ) : AATTNTAAATAACAAANTCCTGTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CAAATAG-T-CC-AAATTAATTTTG------------TTC-----TG-GT--TTACCCCC-TT----TCAG-C-CTGA---TCATC----------TCA--GGT-ACAGA----TT-ACCA----AATTC--------GA-CCCGTCTNA-AATTTA-GCGCG-AGTTATATCGGTACG---AC-TT-G-TTTAATTCCCAACA-CCGGAAG-CAAC-AGCT--AC---A--GTTTGT-TACACTTG--CCGACTA-C--TT---TGCCTGATTTN--TCTCGTACCA-TCCA-TCGACA-TCCATC-TG---TGTTTT----TC-CACA-AA-T-CATCACT-A-TGCCAT-C--CACTAG-AA-ACG-CTTC--GATGAACG-A-GCGTCCCAAAACGCCGCCGG-CAGACAATGGTCA-CACCTTTCCCGGGGGAGGGGGGGTCAGG-AGGAGACC-CCGATCGGAGGC-GCAGCCAGAGCGT-CCTGCGGA--GGTTGC-----GCCTGCCCC--TTTTTCCTCT-ACCACTACCCAGACG-TTCCAG-TCGGACTCNGACGACNCT-CAACAC-AGCCG-C-CGGCGGTGGCCAGCTCCCGG-CCAGTCG--CC-------CCTGCCTC-GTT---GCC-GGTATTACCTCCCCCCTACCCAC-GTGG--AGT---CCACAC----GAGGGCACGTG------TCAA---------GCC---AGGC-AG-GGTGAGCA--CTTCAC-ACC---TGATT---TTAA-TATAC--CG--T---T-ACGAGTCCCTCTGT-TTACCAGCATA--CAAGTTGTCACGATCNANTTGGGGGTCATATCCCCANTAAA-CTCA-AGGTCAAAAT-CTNGGAA--------GGTCAGT--TCA-TNGAC-C-TCTC---GCTGCT--TCTNAAA-TCCGCCT--CGGA--TTTAA-AC-----AATTT-T---GAGTCCCAGGG---C-GACT-TAC-AAATTCG-CAA-TGG-----GC-AGATTGTGCAT-CA--T-NCAAC-CTAAACCTAATT-CATTTTTGC-CTATCGAAAAGTGGACATCTG-CT--T-CTT-AG--TTTT--TAC-TCA-GCATCA-T-GCTCGAGAAACATGTCCACAAAGCACAN-CAACTG-CTTAAGTACATC-AGGGAT-ATTCGCC----TAGC------------AGC-------T--A-GCAG-GTCT-GCAACC--TG-G-TAC-A-AGTAT-GACGAGCAATTATCGCT-T--ACGTAA-GGCT-GCC-G-CACC-NCAC-NT-TCGTGGGGCG--AAAT-C-AATGCC--G-NAGT-AC-T-GGCTTTTGTATGTGT--CCGGTAG--T-TCAAACACAGACACA-T--CTGCCCACCCCTGTAAG-TA-A------T--GCAA----T--AC----GA-TCTGCTGATGTCGA---------CCAAG-TCACC----ACTTA-G-T-GCAAC-TATTACAATGCACGT-NNACCATGTCCTTTC--TACCCCA-AA-TGCA-GG-TT-ANCCATTCT-TGCAAACAGTGCG-G-AGGC-AAACACCC-ACAANCCAACTGC-AAC-AGAAGCCA-TCCAGCAA-TATTCAAACTA--GNC-CCTCGCCAA-TC-AACA-TTAAC-TC-CTT-AGCA-T-CCCATTTGCAAGGTTATCATG-A----TCTA-A-TTTTTATTTT
gi|1 : AATTCTAAATAA--AATTCCTGTTT--TG-AAT-ATAATCAGGATTAT--TTGATGTTTATATTCAAA-AG-T-CC-AAATTAATTTTG------------TTC-----CG-GT--TTACCCCC-TT----TCAGGC-CTGA---TCATC----------TCA--GGTTACAGA----TT-ACCA----AATTC--------GAACCCGTCTTACAATTTATGCGCG-AGTCATATCG-TACGGGAAC-TT-A-TTTAATTCTAAACA-CCGGAAGGCAACCAGCT--AC---A--GTTTGT-TACA--TG--CCGACTA-C--TT---TGCCTGATTTT--TCTCGT-TCA-TCCA-TCGACA-TCCATC-TGCTGTGTTTTATTTTC-CACA-AAAT-CTTCACT-A-TGC-ATGC--CACTAGGAA-ACG-CTTC--G-TGAACGGA-ACGTTTCCAAACGTCGCCGA-CAGCCA-TGGTCA-CACCTT-CCCGGGGAAGGGGGGGTTAGGGAGGAGACC-CCGATCGGAGGTTGCGGCCATAGCGT-CCTGCGGAAGGGTTGTTGTTTGCCTGCCCC--TTTTCCCTCT-ACCACTACCCAAACG-TTTCAG-TCGGACCCAGACGACTCAACAACAC-AGCCG-C-CGGCGGTGGCCAGCTCCCGA-CCAGTCG--CC-------CCGGCCTC-GTTTGGGCC-GGTATTACCTCCCCCTTACCCAC-GTGGGCGGTTCCCCACTT----GAGGACACGTT------TCAT---------GCC---AGGCAAG-GGTGA-TA--CTTCAC-ACC---TGATT---TTAA-TATACCACA--T---T-ACGAGTCCTTCTGT-TTATCAGCACA--CAAGTTGTCACGATCAA------------ATCCCCAATAAA-CTCA-AGGTCAAAAT-CTTGG-A--------GGCCAGT--TCA-TTGAC-C-TCTTCCGGCTGCT--TCTTAAATTCCACCT--CGGA---TTAA-AC-----AATTT-T---GAG-CCCAAGG---C-GACT-TAC-AAATTCGCCAA-CGG-----GTAAGATTGTGCATCCATTT-GCAAC-CTAAA-CTAATT-CATTTTTGC-CTAT--GAAAGTGGACATCTG-CT--T-CTT-AGTTTTTT--TAC-CCA-GCATTA-T-GCTCGAGAAACATGTTCATCGAGAAATT-CAAC-G-CTT-AGTACATC-A-GGAT-ATTCGCC----TAGC------------AGC-------TTAA-GCAGTGTCTGGCAACC--TG-G-TAC-A-AGTAT-GATGAGC-ATT-TCGCC-TAAACGTAA-GGCTGGCT-G-CACCAACAC-AC-GCGTGGGGCG--AAAT-C-AAT-CC--GAAAGT-ACTT-GGCTTTTA-ATGTGT--CCGGTAG--T-TCAAACACAGACACA-T--CTGCCCACCCCTGTAAA-TA-A------T--GCAAG---T--ACCA--AA-CCTGTTGATGGAAA---------CCAAA-TCACCA---ACTTATG-C-CCAAC-TATTACAATGCACGTCACACCATGTCCTTTC--TACCCTAGAA-TGCA-GG-TT-ACCCATTTTCTGCAAACAGTGCG-G-A-GC-AAACACCC-ACAAGCCAACTGC-AAC--GAAGCCA-TCCAGCAA-TATTCAAACTA--GGC-CCTCGCCAA-TCAAACATTTAAC-TC-CTT-TGCA-T-CCCATTTGCAAGGTTATCATG-A----T-TC-C-TTTTTATTTT
gi|10 : -AGGAGAAC-CCGATCGGAAGT-GCAACCAGAACGA-CCTGCATC--AGTTGC-----ACCTGCCCT--TTTTTCA-CT-ACCAC
gi|10 : C-AGTACCACCTCCCC--TAGCCAC-GTGG--AG----CTAGACAGCGGATGGCCTGTG------TCAA---------GTC---AGCC-AG-GGTGAGCA--CTTTA--ACCCTTTGATTAATTTAA-AA------G--T---TTACCAGTCTCCC-AT-TTCCCGGCAAA--CAAGCTGCCACAATCTATTTGGGGGTCATATCCCCAccttgttgtgcaatcttgttatttccactccaaccggccagaggatgtcactacgacgtgaatcgcatcagtaccacctcccctagccacgtggagctagacagcggatggcctgtgtcaagtcagccagggtgagcactttaaccctttgattaatttaaaagtttaccagtctcccatttcccggcaaacaagctgccacaatctatttgggggtcatatcccca
gi|12 : aggagaacccgatcggaagtgcaaccagaacgacctgcatcagttgcacctgcccttttttcactaccacccttgttgtgcaatcttgttatttccactccaaccggccagaggatgtcactacgacgtgaatcgcatTCAAGATTATATTTGAT-TTCATAT-CAAATAG-T-CC-AAATTAATTTTG------------G-A-----TG-GTGTTTATTTCA-TT----TAAA-TTCTTA---TTGTCATTGTGAGAATCATCAGT-ACAGA----TT-CTCA----ATTCT--------GA-CATAT-TCA-GATTTA-GCCAG-AGTTATATCGGTACA---AC-TT-G-ATTAATTTCCAACA-CTGGAAG-CGGC-AGTC--AT---AAGGCTT-T-TACACTTGGACCAACCA-C--TT---
gi|13 : TAT--TTGAT-TTC-TAT-CAAATAG-T-CC-GA-TTAATTTTG------------TTT-----TG-GT--T-ACCCCTGTT----TTAA-C-C--A---TTACT----------TCA--GTT-TGAAAATCTTT-AGTATGATAATTCATTTACCCGA-CTCGTCTAA-AATGTA-ACACG-AGATATATC-GTACG---ACATT-ATTTTGATTCC--ACA-CCGG-AG-CA
gi|14 : CAGTAAAGTTCAGAGTTCAAAATTCTCCCAACGTGAGTTGGTCAATCATTA-TTGAC-C-TCTCCG-GCTGCTACTCAGAGA-GACTCCTGACGCA--TTTAA-ACCACCAAACTTATGCGGAGTTCCAAGGTGTT-GACTGTGCTAAATTCG-AAA-TAGAGACCAC-AAATTATG--------T-TCAA--CTAAAtgattttaagctgttaccgctgactaaaggttgc
gi|15 : ATAG-T-CC-AAAT-AATTTTG------------TTCCCGTCTG-TT--TTACCCCC-TT----TCAG-C-CAG----TCATC----------TCAT-GGT-ACAGAT---TT-ACCA----AATTC--------GA-CCCGT-TCT-AATTTA-GCGCG-AGTCATATCGGTACGA--AC-TT-A-TTTAATTCATAACACCCGGAAG-CAACAAGCTACAC---A--GTTTG--TACA--TG--CCGACTA-C--tgctag
gi|16 : AACACAGACACC-T--CTGCCCACCCCTGTAAG-TA-AATTGAAT--GCAA----TTAGC----GAATTTGCTGATGTCAA---------C-AAA-TCACC----ACTTA-G-TTGCAAC-TACTACAATGCACGT-ACACCGTGTCCTTTT--TACCCTA-AA-TGCA-GGTTT-AGCCATTTT-TGCAAACAGTGCG-G-TGGC-AAaat
gi|17 : GAGAT-ATCAGAT----TGGC------------AGC-------T--G-CCAG-GTT---CAACTATTG-G-TTT-A-GCTAT-GACGAGCAATT-CCGCC-T---CAGAATCGCTAGCC-A--GCC-ACAC-CTGTCATAGGGCA--TTAT-T-AA--CCAAG-AATT-G--T-GGCTATTGTACATTT--C
gi|18 : aaaatattgtcATATTCTCATTAAG-C------GTCAGA-T-CTTGGAA--------AGTCATT--TTA-TGGAT-C-TTCC---CCTGCT--AGCCAAA-TCCATTG--CAAAACTTGAT-AC-----A---T-T---GACTCCCATAG---C-AGTC-TGC-AAATTCA--AA-T-G-----GC-AGCCTGTGCAC-CA--taata
gi|19 : AC-C-TCTC---GCTGCT--TCTAAAA-TCCGCCT--CAGA--TCTAA-AC-----AATTT-T---GAGCCCCAGGG---T-GATT-TAC-AAATTCG-CAG-T-G-----GC-AGATTGTGTAT-CA--T-GCAAC-CTAAACaaattcacct
gi|2 : TAT--TTGAG-TTTATAT-CGATTAGGTGCC-AAAT-AATTTTG------------TTC-----TG-TC--TTACCGCT-TA----TCAG-C-CTGA---TCATC----------TCA--GG--ACAGA----TTTACCA----A-TTC--------GA-CCCGTCTAA-AATTTA-GCGCGGAGTTATATCGGTCCG---AC-TTTG-CTTAATTCT-GACA-CCGGAAG--AAC-A-CT--AC---A--GTT-GTATACA--TG--CCGACTA-CA-TT---TGCCTGATTTTCTTCTCGGGTCAATCCAGTCGACAATCCATCATGC--TGTTTT----TCACACA-AA-TTCATCACT-A-TGCCAT-C--CACTAG-AA-ACGGCTTC--GATGAACG-AAGCGTTCCGAAACGC-GCCAAACAGACAATGGTCAACACCTTTCCCGGGGGAAGGGGTGTTAGG-AG-AG-CC-CCGTGCGG-GGC-GCAGCCAGAGCGT-CCTGCGGA--GGTTGT-----GCATG-CCC--TTTTCCCTC--ACTCTTACCCAGACGTTTCCAGTTCGGACTC-GACGACAGT-CAACAC-AGCTG-C-CGGCGGTGGCCA-CTCCCGA-CCAGTCG--CC-------CCGGCCTC-GCT---GCCAGGTATTACCTCCCCGCTAGCCACTGTGG--CGT---CCACA-----GAGGACACGTT------TTCA---------G-C---AGGC-AGAGGTGAGTA--CTT--C-ACC---TGATTA--TTAATTATAC--CA--T---T-ACGAGT-CCTCGGTCTTATCAGCATAATC-AGTTGTCACGATCGAATT-GGGGTCATATCCCC--TAAA-CTCA-AGGTCAAA----TCGTGA--------GGGCAGT--TCAGTCGACGCGTCT----GCTGC---TCTTTAA-TCCCACT--CGGA--TTTAA-AC-----AATTT-T---G-GTCCCAGGC---C---TT-CAC-AAATTCG-CAATTGG-----TT-AGATTGTG-AT-CA--TGCCAACTCTAAACCTAATT-CA-TTTTG--CTATTGAAAAGTGGACATCTG-CT--T-CTTCAG--TTTT--T---TCA-GC-TTA-TCGATCGAGAAACATGTTCACAAAGCACAA-CA--TG-CTTAAGTAC-TC-AGGGAT--TTCGCC----TAGC------------AGC-------T--AGGCAG-GTCT-GC-ACC--TG-G-TACGA-AGT-T-G-TGAAC-AT--TCGC--T--ACGTAA-GTCT-GCCTGCCACCAACAC--T-TCGTGGGGCG--AAATGC-AATGGC--G-CAGT--C-T-GCCTTTTGTATGTGC--CCGGTAG--T-TCACACA-AGACACA-T--CTG-CCACCCCTGTAAATTA-A------T--GCAAG---T--ACCAAGAA-ACTGC----GTGAA---------CCAAGATCACC----ACT---G-T--CAAC---TTATAATG-ACGT--AACCATGTCCTTTCG-TA-CCTA-AA-TGCA-GT-TTCCACCATTCT-TGCAAAC-GTGCG-GAAGGC-AAACACCC-ACAGA--GACTGCGAACAAGAAGCCA-TCCAGC-A-TATTT-AACTAAGGCC-CCTCGCCAATTC-AACA-TTAAC-T--CTA-AGCA-TACCCATTTGCAAGGTTATCATA-T----TCTA-A-TTTTGATTTt
gi|20 : GATTAT--TTGAT-TTTATAT-CAAATAG-T-CC-AAATTAATTTTG------------TTC-----TGCGT--TTACCCCC-TT----TCAG-C-CTGA---TCATC----------TCA--AGT-ACAGA----TT-ACCA----AATTC--------GA-CCCGTCgttgggtttacttccggtt
gi|21 : AGA----TT-ACCA----AATTC--------GA-CCCGTCT-A-AATTTA-ACGCG-AGTCATATCGATACG---AC-TT-A-TTCAATT-CTAACA-TCTGAAG-CAAC-AGCT--AC---A--GTTTGT-TACA--TG--CC
gi|22 : AACA-CCGGAAG-CAAC-AGCT--AC---A--GTTTGT-TAAA--TG--CCGACTA-CAATT---TGCCTGTTTTT--TCTCG--CCA-TCCA-TCGA------ATC-T-----------------------------TCATT-A-TGCCAT-C--CACTAG-AA-AC
gi|23 : TATCGCT-T--ACGCAA-GGCT-CTC-A-CACT-TCATATT-TCGAGGGGAG--GGGT-T-AATACT--G--AGTNAT-T-GG
gi|24 : gcagGGTTAT--TTGAT-TTTATAT-CATATAG-T-CCAAAATTGATTTTG------------TTT-----TGTGT--TTtcattg
gi|3 : ---TGCTTGATTAA--TCTTGT-CAA-TCCA-TCGACA-TCCATC-TGC--TGTTTT----TC-TACA-AA-T-CATCACTGA-TGCCAT-CTCCACTAG-AAGACG-CTTC--GACGAACG-A-ACGTCTTAAACCGCCGCCGG-CAGACAATGGTTA-CACTTTTCCCGGGGGAAGGGGG-TCAGG-AGGAGACCACCGATTGGAG-C-GCAGCCAGAGCGTTCCTTCG-A--GGTTGT-----GCCTGCCCC--TTTTTACGCTTACCACTACCCAGACG-TTC-AG-TCGGACTCAGACGAC-CA-AAACACCAGCCG-T-CAGCGTGGGCCAGCTCCCGGGCCAGTC---CT-------CCTGCCTCCGTT---GCT-GG-ATTACC----CCCTACC-A--GTGG--AGT---CCACA-----GAGG-CACGTAATTTTTTCAAAGGGGGGGGGCCCAAGGGC-AG-GAAAAGTATACTTCACCACC---TGATT---TTAA-TATACA-CA--T---T-ACAA-TCCCTCTGT-CTATCAGC-TA--CAAGTTGCCACGATCAAATTGGGA---ATAGCCCCAATAA--CTCA--GGTCAAAAT-CTGG--A--------GGACAGT--GCA-TC-AC-C-TCTA---CCTGCT--TCTGAAA-TCCGT-T--CGAA--TTTAAGAC-----AATAT-T---GAGTCCCAGGG---CAGACT-TAC-AAGTTCG-CAA-TTG-----GC-AGAT-GTGCAT-CA----CCAAC-CTAAACCTAATTTCACTTTTGCTCTATTGAAAAGTGGACATTTC-CT--T-CT--AG--GTTT--TAC--CA-GCATTA-T-------------TGTTCACAAAGCACAT-CAACTGGCTTAAGTACATT-AGGGAT-ATTCGCC----TACC------------A-C-------T--A-GCAG-GTCT-GCACCC--TGTGTTAC-A-AGTATGGATGAGCAA-TATCGCA-G--ACGTAA-GGCT-GCT-G-CACC-ATAT-CT-TCAATGGGTG--AAAT-CGAATGC-----GAGT-AC-TGGGC--TTGTATGTGT--CCGGTAGTTT-TC-AACACAGACACA-T--CTGCCCACCCCTGTAAG-TA-A------TTCACAG----T--ACCA--CA-CCTGTTGA-AACAA---------CCAAA-TTACC----ACTTA-T-T-GCAGC-TATTATATTTGACGTACCGCCATGTCCGTTCCATATCCCA-AA-TGCA-GT-TT-AACCATATT-T---AACAGTGCG-G-AGGCAAAACACCCGACAAACCACATGC-AAC-ATGAACCA-TCCA--AATTATTCAAACTAT-GCC-CCTCGTCAA-TCGAATAGTTAAC-TCGCTTAAGCATT-CCCATTTGCAAGGTTATCATGAA----TCTA-A-TTTTTATTCT
gi|4 : AATTGTAAATAACAAAGT---GTTCAACGTAATCATAATCAGGATTAT--TTGAT-TTTATAT-CAAATAG-T-AC-AAATTAATTTTGGAGGGTGTTTACTTC--------AT--CTATCTAC-TTACGGTCAG-C-C-GAGAATCATC---------------GGT-ATGGA----TC-CTCA----ATTTT--------GA-CACATTTTA---TTTA-GACAG-GGTTATATCGGTACG---AC-TT-G-TTTAATTTCCAACA-ACGGAAG-CAAC-AGTC--AC---ACGGCTT-T-TACACTTG--G-GACTA-A--ATATATGCCAAATCTA--TTTCCTACCA-TCCA-TCGTCA-TCCGGC-GG---TATTTA----TC-CTCGTAA-T-CACTACC-AATGTCAC-C--CACCAA-AA---G-TTCCAAGATGAATG-A-GCGTCC-AAAACACAGTCGG-CAGACGATGGACA-CACCTT-CCTGGGGAAGGGGGGGTCAGG-AGGAGACC-CCGACCGGAGGC-GCAGTCACAGCGC-CCTGCAGA--GGTTGC-----GCCTGCCCCCTTTTTTCCTCC-ACC------CAGACG-GTCCAG-TCCTACTTTGACGACGCT-CAACCC-AGCCCTC-CAGCGGTGGTCCGCGCTCAG-CCAGTCGTTCCTCATCTTCCTGCCTT-GTT---GCC-TGCTTTACCTCCCCCA-ACCCAC-GTGG--AGT---GTAC-T----GAGGGCACGTG------TCAA---------GCC---AGGC-AG-TGTGAGTA--TTTCAC-ACC----G--T---TTAA-TATAC--TGCAT---T-ACGAGTCC-TCTGT-TTACCAGCATA--CAAGTTGTCACGATCAACTTGGGGACCATATCCCCACCAAA-CGCA-AGGTCAAAAT-CTAGGAA--------GGTCAGT--TCA-TAGAC-C-TCTC---GCTGCT--TCTAAAA-TCCGCCT--CGGA--TTTAA-AA-----CATTT-T---GAGTCCCAGGG---T-GACT-TAC-AAATCTG-CAA-T-G-----GC-AGATTGTGCAT-CA--T-TCATC-CTAAACCTAATA-CAATTTTGC-CTATCGAAAAGTGGACATCTACCT--C-CTT-AG--TCTT--TAC-T-A-GCATCA-T-GTTTGAAAAACATGTCCACAAAGCACAG-CAAATA-CTTAAGTATTTT-CGGGAA-ATTCGCC----TAGC------------AGC-------T--T-GTAG-GTCT-GCAACT--TG-G-TAC-A-TGTAT-GACGAGCAA-TATCGCT-T--ACGTAA-GGCT-GCC-A-CACC-CCATACT-TCGTGGGGTG--AACT-C-AATACT--G-AA-T-AC-T-GGCTTTTGTATGTGT--CCGGTAG--T-TC-AACACAGACACC-C--CTGCCCCCTCCCGCTAG-TA-A---------------------------A-TCTGCTGATGTTGAGTAATCACCCCAAG-TCACC----Atggtttactttccggtttttgtcttcaatatttagccacggggggctcgggaatcccacatctcaaaagcacaaaacaaaaacatgacaatagcaagtgaataattagtaaagaatcggggcttcaaagggtttgctggccatttaaaaattcacccctcgttaatctacaagttcccctt
gi|5 : accatgctcttcggtgTTATATCGGTACG---GC-TT-G-TTTAATTTCCAACA-CCGGAAG-CGAC-GGTC--ACAAGA--ATT--T-TACACTTG---GGACTAGA--TT---TGCCAAATCTA--TATTTTACCA-TCCA-TCGACA-TCCAGC-GG---CATTTA----TC-at
gi|5 : CCCAGACG-TCCCTT-TCCGACTCTGACGACTCT-CAGCCC-AGCCA-TTCGGTGGTGACCCGCTCTCAG-CCAGTTG--TT-------TCTGCCTT-GTT---GCC-TGCATTATCTCCCCC-TACCCAC-TTGG--AGT---CTAC-T----GAGGCCATGTG------TCAA---------GCC---AGGT-AG-GGTAATCA--TTTCAC-ACC---TGAGG---TTAA-TACAC--CG--TCTTT-A-GAGTCC-TCTGT-TTATAAGCATA--CAAGTTGTCACGATCAACGTGGGGATCAAATTCTCACCAAA-CTCA-AGGTCCAAAT-CCGGCAC--------TGTCATT--GTA-TAGAC-C-TATC---GCTGCT--TCTAAAA-TCCGCCT--CAGA--TTTAA-AT-----AATTT-T---GAGTCCCAGGG---T-GATT-TAC-AAATTCG-CAG-T-G-----GC-ATGTTGTGTAT-CA--T-GCAAC-CTAATCTTAATA-CATTCTTGT-CTATCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccagacgtccctttccgactctgacgactctcagcccagccattcggtggtgacccgctctcagccagttgtttctgccttgttgcctgcattatctccccctacccacttggagtctactgaggccatgtgtcaagccaggtagggtaatcatttcacacctgaggttaatacaccgtctttagagtcctctgtttataagcatacaagttgtcacgatcaacgtggggatcaaattctcaccaaactcaaggtccaaatccggcactgtcattgtatagacctatcgctgcttctaaaatccgcctcagatttaaataattttgagtcccagggtgatttacaaattcgcagtggcatgttgtgtatcatgcaacctaatcttaatacattcttgtctatc
gi|6 : ttatatcggtacggcttgtttaatttccaacaccggaagcgacggtcacaagaattttacacttgggactagatttgccaaatctatattttaccatccatcgacatccagcggcatttatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngATCTG-CT--TTCTT-AG--TTTTATTCC-CCACGCATTAAT-GCTCGAGC--CATGTTCACCGGGCACACACCACTG-CTCA-GT-CATCCAGGGCTTATAAGCCACCCCAGCGTCACAACATCCAGCCCCTTTTT--A-GCCG-GT-T-GCCAC---TG-G-CTC-ACAGTAT-GCTGAGCAATTATCGCTAC--ACGTA--GGCT-GCT-G-GCCC-CCAC-TT-TCGTGGGGCGCCACAT-C-A-TGCC--G-CAGT--C-T-GGCTTTTGTCTGT-C--CCGGTAG--TGTCA--CACCGACACAAT--CTGCCCCACCCTGTA---TACA------T--GCAAGTCCC--CC----CA--CTGCTCATGC--A---------CCA----CACCTCCCCCTTA-G-T-GCACCCTCTTACTAC-CACGT-CCCCC-TGTCCTTTC--TACCT----A-TGCACGG-TT-CCCC-TTCT-TGCACACAGTGCGCA-AGGC---ACACCC-CCCACCACACTGC---C-CGCAGCCACTCCAGCCA-TATTC-ACCTC--GGC-CATCGCC-A-TC-ACCA-TTCACATC-CTC-CGCA-T-CCCCTTTGC-AGGTTATCAC--ATCCTTCTACATTTTTTATTT
gi|7 : tTCTTGT-CTATCGAAAAATGGACATCTC-CCC-T-CTT-AG--TATT--TAC-TTA--CATCA-T-GCTTAAAAAACATGCCCACAAAGCATAT-CAAATA-TCAAAGTACATC-AAGAAT-AATCACC----TAGT------------GGC-------T--A-GCAG-GTCT-GCAACT--TG-G-TAC-A-AGTAT-Ggttgtttacttccggttttcgttcttcaaccatatttaggaccacgggggggctgagcactcccacactccagcatcacccacctgccacagacgcgcgtgaattagttcaggacagtcgggcttccatcgggtgctggcaccactttcatttctccccccctcgttaaactaacccagtttctcttt
gi|7 : CCCCTTTAAG-TA-A------T--GCAA----TTAGCA---GA-TCTGCTGATACCAA---------GCAA--TCAAC----CCTTA-GTT-GTAAC-TATTACAATGCAAGT-AAATCATGTCCTTTC--TACCCCA-AA-TGCA-GGCTT-ATCCATTCT-TACAAACAGTGCG-G-AGGC-AAACACCG-ATAATTCAACTGC-AACAAGAAACCA-TCCAGCAA-CATTCAAACTA--GACTCCTTGCAGA-TC-Annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcccctttaagtaatgcaattagcagatctgctgataccaagcaatcaacccttagttgtaactattacaatgcaagtaaatcatgtcctttctaccccaaatgcaggcttatccattcttacaaacagtgcggaggcaaacaccgataattcaactgcaacaagaaaccatccagcaacattcaaactagactccttgcagatcac
gi|8 : tcttgtctatcgaaaaatggacatctcccctcttagtatttacttacatcatgcttaaaaaacatgcccacaaagcatatcaaatatcaaagtacatcaagaataatcacctagtggctagcaggtctgcaacttggtacaagtatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt----GATGGCCCGTG------TCAA---------GTC---AGCT-AG-GGTGAACA--CTT--------------T---TT-----TAC--C------------AGTATCTCT----TACCAGCA-A--CAAACTGTCACAATCTACTTGGGGGTCATATCTCCAGTAAA-CTCA-AGTTCAAAAT-CTAGGAG--------GGTCTAT--TTA-TTGAC-C-TCTC---GCTGCT--ACTCAAA-TCTTCCT--CGGA--TTTAA-AC-----AGTTT-C---GAGTCCCAGGG---T-GACT-TGC-ATATTCG-AAA-TGG-----A--AAATTTTGTTT-AA--C-TAAAT-CTAAACCCAA---CATTTTTTCAGTATCGAAAAGTGGACATCCG-CTTGT-CT------TCTT--TACTTTA-GCATCT-T-GCTGGAAAAGTATGCCCACAAGACTTAA-GAATTG-CTCAAc
gi|9 : ttggagcgagacaacg--TG-G-TAC-A-AGCAC-GATGAGCAA-TATCGTT-T--ACGCAA-GGCC-CTC-A-CACT-TCATACT-TCGAGGAGAG--GGGT-T-AATACT--G--AGC-AT-A-GGCTACTATATGTGTTACC--TAA--T---AAAC-TA-ACATA-TCCCTGTACAGCCCGTTTGG-TA-A------T--AC----------------A-TCTTTTGACGTTGG---------TAAAG-TCTCC----CCTTGCG-G-GCAG--TAATACAATGCAGGT-TAATCATGAACGTTC--TA--CCA-AACTGCA-GGTTT-AGCCATTCT-TGCAAACGGTGAG-G-AGGC-AAACACCC-ACAATCCACCTGC-A--------CCA-CTAAGCA---ATTCAAACCC--GTC-CCTCGCCAG-TT-AACA-TTAAC-TT-TTT-AGCG-T-CACATTTGCAGGGtatcgttttgcacccagc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GAAGTCAGGCTCCACAGGGTTGCTGAACCATTTAAAAGTCCAACTCTTGTTAAATTACAAGTTTCCCCCTTGGCCTCGTTCCAATGAAATATGGCGATGTGTACCTGATACACCATCTTTCTTACCCTGAACATAACTCGGCCAACACCATTATCGACCCTAGAGTTTGTTCTATTACCTATTCCAGTATTGACCAAGATCAAGCCGCGAGTATGATTTCCCTCTCGGGAAAGAATTCACTATTAGCCAAGTCAGA