lowQualScore : 11111111111111111111111111111 111111111111111111111111111111111111111111111111111
lowQualScore : 1111 11111 333333333333333333 11 2 1 222 9999999999 11 2222 2222 222 4 4 44 33 1 1 22222 1 4 1 33 4444 1 2 1 4 5555555555 1 55555555555555 3 777777777777777777777777777777 1 444444444 1 33333333333333 2222 22 444 111 22 11 1 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111 11 22222222222222222222222222222 1 1111 22222 22222 444444444444444444444444444444444444444444444444444 22222222222 1111 111111111 22 3333333333333333333333 11 111111 111 2222222222222 11111111 1111 1111111
lowQualScore : 9999 888 5 77777 2 5 5 77 5 5 5 5 888888888888888888 3 3 2 22 0 3 3 6 3 0 333 4444444444 88 1111 2222 2 555 0 0 4 77 3 22 0 0 8 55555 0 6 6 0 0 6 99 8888 3 6 3 0 8888888888 1 5 2 88888888888888 4 555555555555555555555555555555 0 333333333 0 99999999999999 6 3 2 6 5 6 888 5 1111 22 77 0 5 888 000 5 77 77 5 5 1 55 33 6 1 6 6 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222 11 33333333333333333333333333333 3 8888 6 55 44444 0 11 00000 8 888888888888888888888888888888888888888888888888888 0 22222222222 4444 1 888888888 0 2 44 5 0 5 5 66 5 5 1 5 2222222222222222222222 66 66 4 777 3 4 00 66 4 0 777 4 222222 4 222 4 66 66 888 7777777777777 0 99999999 5 2222 77 1111111 77 00 5 7
lowQualScore : .... ... . ..... . . . .. . . . . .................. . . . .. . . . . . . ... .......... .. .... .... . ... . . . .. . .. . . . ..... . . . . . . .. .... . . . . .......... . . . .............. . .............................. . ......... . .............. . . . . . . ... . .... .. .. . . ... ... . .. .. . . . .. .. . . . . .......................................................................................... .... .. ............................. . .... . .. ..... . .. ..... . ................................................... . ........... .... . ......... . . .. . . . . .. . . . . ...................... .. .. . ... . . .. .. . . ... . ...... . ... . .. .. ... ............. . ........ . .... .. ....... .. .. . .
lowQualScore : 2222 888 0 55555 7 7 7 99 7 7 7 7 000000000000000000 2 2 5 22 2 2 0 7 3 7 333 3333333333 33 7777 0000 5 555 0 0 0 55 2 55 0 0 8 00000 0 0 0 0 0 7 00 7777 3 7 3 0 3333333333 0 7 5 88888888888888 2 222222222222222222222222222222 0 555555555 0 55555555555555 7 2 5 7 0 7 333 7 7777 77 99 7 7 666 000 7 99 99 7 7 0 00 66 7 7 7 7 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0000 00 00000000000000000000000000000 3 3333 0 88 55555 8 88 00000 0 888888888888888888888888888888888888888888888888888 8 99999999999 2222 7 555555555 2 2 22 0 4 0 0 99 0 0 0 0 3333333333333333333333 11 11 4 888 9 4 66 11 4 1 888 4 888888 4 222 4 11 11 888 5555555555555 1 88888888 7 1111 99 7777777 99 99 7 8
consensus : CGATTC---TTTCC---AC-TCGTGGGAA-----CATTTTC-TCA-GC--AC-GAACC-TGGAT-TGA-AATTGACTTG-CATT-GATGCATTCAAGATTGCATAATAATAGACATTTGGTAAAACATATTCAGAACGAGGTCCG-AAAA---TATTAA-CAG------GGGGG--GGGGG--C-ATATTTCAAATTCGTATCNANANACGAAAGTATG-AGCTAGGT-GAATANGGTANTTTTGATTAAAAATCCACAGT-CCGATATAAAGTTTTAAAAGAA-ATTTTATAAATTGGACATTCTTTT-----AATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTTACA-TTATTTATTTTT----AAAACAA-TTTCAAAATGTA-CCATATGATTTTTT----------AGTGCTTGCGTTGAAATTTTCA--------------TCTTTTAA-TGTCAG--A--CATGANAC---TATAAT-------AT-ACACATATAATT-TA--A-CGCA-GTATGGTT-ANT---AAC-GATTA-AAACGTTGCT-AGTACATT-GT-A-AATGT-AATT--A-CTTAATT-ACT--ATAATTGGAATAA-GGTAT--GC---A-T--GA--GAAA-T-TTCGCAAATCAAGTTAT-ATATTTCTG--AAAAC-ACCC-T-TTAATGAAT---ACACGGGTGATAC-CGTGGT---TT-ATTGAATTTC--AAAAAGTTAAT--ATTT-------AA----AATA-GAT-ACTG-GCG--TTGA--T-CAGAAACTGCAGTTT---T-----------GT-ACTG-----T-GATCAG-CTAA-A-CGGATTGAAATTGAAT----TTTAAAAAATG-----CCCCC-CCC-----------------CC-------C------------GG----TT--T-AATATCT---------T-AA----TACA--A--A---AAGTGGATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCC-----AC-GG--GTG-------GA--AA--GA-AT---CGGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGAT---GG-------------AGATTAC-----G--ACCGCT-GT----ATAT--TTC--GA---AT--TTTGTTACTCTA-TGTTCCGTGGTAT
Reference ( gi|2 ) : CGATTC---ATTCC---AC-TCGTGGGAA-----CATTCTC-TCA-GC--AC-GAACC-TGGAT-TGA-AATTGCTTTG-CATT-GATGCATTCAAGATTGCATAATAATAGACATTTGGTAAAACATATTCAGAACAAGGT-CG-AAGA---TATTAA--A-------GGGGG--GGGGG--C-ATATTTC-AA-TCGTATTCAG-AACGAAAGTATGAAGCTAGGTGGAATAAGATA--TTTGATTAAAAATCCAC-GT-CCGATATAAAGTTTTAAAAGAA-ATTTTATAAATTGGACCTTCTTTT-----AATC-ACATGTG-TC-TCAATTACAAATTCCCAGGCGTTACATTTATTTATTTTTC--AAAAACAA-TTTCAAAA-GTA-CCATAT-ATTTTTT----------AGTGCTTACTTTGAAATTTTCA--------------TCTTTTAATTGTCA---A--CATGAAAC---TATAA--------AT-ACACATATAATT-T---A-CACA-GTATGG-T-AAT---AAC-GATTA-AAACGTTGCT-AATACATT-GT-A-AATGT-AATT--A-CTTAATT-TCT--ATAATTGGAATAA-GGTA---GC---A-T--GA--GAAA-T-TTCGCAAATCAAGTTA--ATATTTCTG--AAAAC-ATCC-T-TTAATGAAT---ACATGGGTGATAC-CGTGGT---TT-ATTGAATTTCCGAAAAAGTTAAT--ATTT-------AAG---AATA-GAT-A----GC---CTGA--T-CAGAAACTGCAGTTT---T-----------GT-ACTGCAAAAT-GATCAG-CTAG-A-CAGATTGAAATTGAAT----TTTAAAAAATG-----CCCCC-CCC-----------------CC-------C------------GG----TT--T-AATATCT---------T-AA----TACA--A--A---AAGTGGATATCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCC-----AC-AG--ATG-------GA--AA--GA-AT---CAGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGAT---GG-------------AGATTAC-----A--ACCGCT-GT----ATAT--TTC--GA---AT--TTTGTTACTCTA-TGTTCCATGGTAT
gi|1 : CGATTC---TTTCC---AC-TCATGGGAAGGGAACATTATC-TCA-GC--AC-GAACC-TGGAT-TGA-
gi|4 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatactaacctgtatctgctctaccaagtccaaaacatttggatcccgcgtcgactcaatgccacgaccaattgaatgccagcgctgtgtatgtccttttcactacttcatcgttagaggtaacattttctcagcacgaacctgaattgaaattgacttgcattgatgcattcaagatgcataataatagaaatttggtaaaacatattcagaataagtccgaaagatattaaagggggggggggggggggcatatttcaaatcgtattcagaaacgaaagtatgagctaggtgaataagatattttgattaaaaatccacagtccgatataaaattttaaaagaaattttttaaattggacattcttttattaaaatcacacgcgctctcaattacaaattcccagacgttacattatttattttcaaaacaatttcaaaatgtaccatatgattttttaatgcttgcattgaaattttcatcttttaatgtcagacatgaaactatatacacatataatttaatgcagtatgctaatacattgtcaatgtaattaactaattaactatattggaataaggtatgcactgagaaatttttgcaaatcaaagtattatatttctggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttaaaaagtggaCGATTC---TTTCCGTCAC--CGTGG-AA-----CATTTTC-TCAGGCAAAC-GAACC-TGG-T-TGGTCAT--CTTTGATATTGGATGTGGCC-AGATT------TAATCCGCA-------------------AACGAGGTCCA-AAAA---TATTAAACA-------GGGTG--GGGGGAAC-ATATTTgcgctggcattcaatatcggtgcattgtgacgtcaaatgtttttgactgtaacaaatgagattgcgactgctgtatatttcgaattttttactctatgttctgtggtat
gi|11 : aaacgttgcttagtacattcgtacaatgttaattaacttaattactcaataattgaataacggtctgcatctgacagaaatttcgcaaatcaagttatatatttctgaaaacacccctttaatgataccgggtcaaaacagtttaaatttaaaataaatactgcgcctgatcagaaactgcacattctctgtactttgatcagcgaggacggattgaaatatttttaaaCGATTC---TTTCC---AA-CCGTGGGAA-----CATTTTC-TCT-GC--GC-GAACC-TGGAT-TGA-attcaaggttggtgcattgtgacgtcgaatgttttgactgtaacagatggagattacgaataaaccgctggtatatttcgaatttttactctactgat
gi|12 : agtggaCGATTCTTTATCCA---AC-T---GGGGA-----CATTTTCCTCA-GC--ACGGAACC-TGGATGTGA-gcactggcattcaatgtcggtgcattgtgacgtcaaatgttttgactgtaacagatggagattacgaccgctgtatatttcgaattttgttactctatgttccgtgg
gi|14 : tggctagcttaaagtgtacaaaaagtggaCGATTC---TTTCC---AC-TCGTGGGAA-----CAgcgcttggcattcaatgtcgatgcaacgtgacgtcaaatgttttgactgtaacagatggagattacgac
gi|3 : taatacaagaatggatttgaaaccttGATTA---TTTAC---AC-TCGTGGGAA-----CATTCTC-TCA-GC--AC-GAACCGTGGAT-TGA-AATT----------------CATTCAAGATTGCATAATAATAAACATTTGGTCAAACATATTCAGAACAGGGTCCG-AAAAGACTATTAATTAATC----GGGGGTCGGGGG--CAATATTCC-AATTCGTATCAAT-CACGAAAGTATG-AGCTAGGT-GAATATAGTAATTTTGA-TAAAAATCCACAGTCCCGATATAAAGTTTTAAAAGAATGTTTTATAAATTGGACATTCTTTT-----AATCAACACGCACTCTTCAATTATAAATT-CCAGGCGTTAC--TTATTTAATTTTCCAAAAAACAATTTTCAAAT-GTATCCATATGATGTTTT----------AGTGCTTACGTTGAAATTTTCA--------------TCTTTTAA-TGTCAAGCA--TATGAACT---TAT----------ATGACACATATAATTGTTAAA-CGCAGGTATGGTT-ATT---AAC-GATTATAAACG-TGCT-AATGCTTT-GTAA-AATGT-AATTTAA-CTTAATT-ACT--ATAATTGTAATAA--GTAT--GC---A-T--GA--GAAA-TAATCGCA--------------ATTTCTGA-AAAAC-ACCC-T-TTAATGAAT---ACACGGGTGATAC-CGTGGTTGATT-ATCTGATTTC----AAAGTTAAT--ATTT-------A-----AATAGGAT-AGGG-GC---CTGA--T-CAAAAAT--CAGTTT---G-----------CTAACTGCAAAATGGATCAGCCTAA-ACCGGATTGAAATTGAA-----TTTAAA-----------CCCC-CCC-----------------CC-------T------------GG----TTTGT-AATATCT---------T-AA----TAgcgctggcattcaaaagggcgttgcattgtgaacgtcaaatgttttgaactgtaacgccga
gi|1 : acgcacggaacaatagagtaacaaaattcccgaaatatacagtggtcgtatcttcatatgttacagttcaaaaaacatttgacgtccaatgcaccgacattgaatgccagcgcaTTC---AT--C---GT-TAGAGGTAA-----CATTTTC-TCA-GC--AC-GAACC-TGAAT-TGA-AATTGACTTG-CATT-GATGCATTCAAGA-TGCATAATAATAGAAATTTGGTAAAACATATTCAGAATAAGTC-CGAAAGA---TATTAA--AGGGGGGGGGGGG--GGGGG--C-ATATTTCAAA-TCGTATTCAGAAACGAAAGTATG-AGCTAGGT-GAATAAGATAT-TTTGATTAAAAATCCACAGT-CCGATATAAAATTTTAAAAGAA-ATTTTTTAAATTGGACATTCTTTTATTAAAATC-ACACGCGCTC-TCAATTACAAATTCCCAGACGTTACA-TTATTTATTTTC----AAAACAA-TTTCAAAATGTA-CCATATGATTTTTT----------AATGCTTGCATTGAAATTTTCA--------------TCTTTTAA-TGTCAG--A--CATGAAAC---TAT----------AT-ACACATATAATT-TA--A-TGCA-GTATGC-T-AA---------------------------TACATT-GT-C-AATGT-AATT--A-ACTAATTAACT--AT-ATTGGAATAA-GGTAT--GC---ACT--GA--GAAATT-TTTGCAAATCAAAGTATTATATTTCTG--GA
gi|7 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatactaacctgtatctgctctaccaagtccaaaacatttggatcccgcgtcgactcaatgccacgaccaattgaatgccagcgctgtgtatgtccttttcactacTTC---TTTCC---ACCTCGTGGGAAA----CATTCTC-TCA-GC--AC-GAACC-TGGAT-TGA-AATTGACTTG-CATT-G----ATTCAAGATTGC--AATAATAGACATTTGGTAAAACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttaaaaagtggatcaatccaggttcgtgctgagataatgttcccttcccatgagtggaaagaatcggcgctggcattcaatatcggtgcattgtgacgtcaaatgtttttgactgtaacaaatgagattgcgactgctgtatatttcgaattttttactctatgttctgtggtat
gi|18 : gaccacggaacatagagtaacaaaattcgaaatatacagcggtcatataatctccatctgttacagtcaaaacatttgacgtcacaatgcactgacattggaataccgcgccgTGATTAAGAATTCA--GT-CCGATATAAAGTTTTGAAAGAA-AATTTATAAATTGGACCTTCTTTT-----AATC-GCACGCGCTC-TCAATTACAA
gi|5 : TTAAAAATTCACAGT-CCGGTATGAAGTTTTAAAAGAA-ATTTTATAAATTGAACATTCTTTT-----AATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTTATA-TTATTTATTTTT----AAAACAA-TTTCAAAATGTA-CCATTTGATTTTTTTGTTAATGAAAGTGCTTGCGTTGAAATTTTCATTTAGTTGGTGTTTTCTTTTCA-TGTTAG--A--CATG-CACTGATACAAT-------AT-ACACATACAATT-TA--A-CGCA-GTATGGTT-ATT---AAC-TATTA-AAACGTTGGT-AGTACATT-GT-A-AATGC-AATTA-A-CTTAATT-ACT--CTAATTGGAATAA-GGTATATGC---A-T--GA--GAAA-T-TT
gi|6 : TTTT----------------TCTTTTAAATGTCA---GACCATGATAC---AATAATAACAATAAT-ACACATATAATT-T---AATGCA-GTATGG-TTAATTCAAACTGATTA-AAACGTTGAT-AGTA-AT--GT-A-AATGC-AATA--A-CTTAATT-ATT--ATA-TTGGA-TAA-GGTATATGTTAAA-T--GA--GAGA-T-TT-GTAAATCAAGTTA--ATATTTCTGAAAAAACAACCC-T-TTAATGAAT---TTA-AGGTGATA--CGTGAT---TTAATTGAATTTC--AAAAAGT--AT--A----------------ACTA-GAT-ACT--GCG--TTGA--TGCAGAAtatatttc
gi|4 : ttgaaatttttatatagttggtg-AAACGTTGCTTAGTACATTCGT-ACAATGTTAATT--AACTTAATT-ACTCAATAATTG-AATAACGGTCT--GC---A-TCTGACAGAAA-T-TTCGCAAATCAAGTTAT-ATATTTCTG--AAAAC-ACCCCT-TTAATGA---------------TAC-CG-GGT----------------CAAAACAGTTTAA--ATTT-------AA----AATA-AAT-ACTGCGC---CTGA--T-CAGAAACTGCACATTCTCT-----------GT-ACTT-----T-GATCAG-CGAGGA-CGGATTGAAAT--ATT----TTTAAAAAATATGTTCCCCCCACCCTGTTTAATATTTTTGGACCTCGTTTGC------------GG----AT--T-AA-ATCTGGCCACATCC-AA----TATC--A--A---AGATG---ACCA-A-CCA-GGTTC-GTTTGCCTGAG-AAAATGTT-CC------AC-GGTGACG-------GA--AA--GA-AT---CG---------ATTC--AAG--G-TTGGTGCATTG---TG-ACG------TCGAATG-TTTT---G-ACT--GT--AACAGAT---GG-------------AGATTACGAATAA--ACCGCTGGT----ATAT--TTC--GA---AT--TT--TTACTCTA-
gi|9 : -AAACGTTGCT-AGTACATT-GT-A-AATGT-AATTA-A-CTTAATT-ACT--ATAATTGGAATAA-GGTAT--GC---A-T--GA--GAAA-T-TTCGCAAATCAAGTTAT-ATATTTCTG--AAAAC-ACCC-T-TTAATGAAT---AC--GGG--------------------------TTC--AAAAAGTTAAT--ATTT-------AAA---AATA-GAT-A----CT---TTGA--ctgat
gi|16 : GT-AATT--AACTTAATT-ACT--ATAATTGGAATAC-AGTAT--GC---A-T--GA--GAAA-T-TTCGCAAATCAAGTCAT-ATATTTTTG--AAAAC-ACCC-T-TTAATGAAT---ACACGGGTGacctaatgcagagtc
gi|19 : TA--CTGTTTCTG--AAAAC-A--C-TGTTAATGAATTATATACAGGTGATACGCGTGAT---TT-AATGAATTTC--AAAAAGTTAA
gi|10 : TAATACGCATGGT---TT-ATTGAATTT----AAAAACAGATCCATTTGCGCCTGAAGTGGAATC-TACGA----GCGGATTGAAAT-CAGAAACTACAGTTT---TTGTGTGGGCATGT-TCTG-----T-GATCAG-CTAA-A-CGGATTGAAATTTAAT----TTTA-AAAATG-----TCTCC-C
gi|1 : TGAATACGATTTGAAATATG-----CCCCC-CCC-----------------CC-------C------------CCCCCCTT--T-AATATCT---------T-taggttttaatct
gi|17 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatactaacctgtatctgctctaccaagtccaaaacatttggatcccgcgtcgactcaatgccacgaccaattgaatgccagcgctgtgtatgtccttttcactacttcatcgttagaggtaacattttctcagcacgaacctgaattgaaattgacttgcattgatgcattcaagatgcataataatagaaatttggtaaaacatattcagaataagtccgaTTAAAAAATG-----CCCCC-CCC-----------------CC-------TCCCCCCCCAAATGG----TT--TTAATATCT---------T-gaaacgaaagtatgagctaggtgaataagatattttgattaaaaatccacagtccgatataaaattttaaaagaaattttttaaattggacattcttttattaaaatcacacgcgctctcaattacaaattcccagacgttacattatttattttcaaaacaatttcaaaatgtaccatatgattttttaatgcttgcattgaaattttcatcttttaatgtcagacatgaaactatatacacatataatttaatgcagtatgctaatacattgtcaatgtaattaactaattaactatattggaataaggtatgcactgagaaatttttgcaaatcaaagtattatatttctggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttaaaaagtggatcaatccaggttcgtgctgagataatgttcccttcccatgagtggaaagaatcggcgctggcattcaatatcggtgcattgtgacgtcaaatgtttttgactgtaacaaatgagattgcgactgctgtatatttcgaattttttactctatgttctgtggtat
gi|12 : ttgcagatgcattgcagcaatgatagattaatccgaacgagctaggtccaaTAGCT---------T-AAAGTGTACA--A--A---AAGTGGAT--CACATCCA-GGTTCCGT--GC-TGAGGAAAATGTC-CCC-----A---G--TTG-------GATAAA--GA-AT---CGGCGCTTGGCATTC--AAT--G-TCGATGCAACG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGAT---GG-------------AGATTAC-----G--AC
gi|1 : tggcATCT---------TGAA----TGCATCA--ATGCAAGTCAATTTCA-ATTCA-GGTTC-GT--GC-TGAG-AAAATGTT-ACCTCTA-AC--G--ATGAAGTAGTGA--AAAGGACATACACAGCGCT-GGCATTC--AATTGG-TCGTGGCATTGAGTCG-ACGCGGGATCCAAATG-TTTTG--G-ACTTGGTAGAGCAGATACAGGTTAGTATCTGAGCAGATTAC-----A--A--GTT-GTGTAGATATGGTTC--AATGCAT--TTTG--ACTCTA-
gi|7 : actctcagactgATCT---------TGAA----T-CA--ATGC---AAGTCAATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AGAATGTTTCCC-----ACGAG--GTG-------GA--AA--GA-A----CGGCGC--GGTATTCC-AAT--G-TCAGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGAT---GG-------------AGATTAT-----ATGACCGCT-GT----ATAT--TTC--GA---AT--TTTGTTACTCTA-TGTTCCGTGGTgcataataatagaaatttggtaaaacatattcagaataagtccgaaagatattaaagggggggggggggggggcatatttcaaatcgtattcagaaacgaaagtatgagctaggtgaataagatattttgattaaaaatccacagtccgatataaaattttaaaagaaattttttaaattggacattcttttattaaaatcacacgcgctctcaattacaaattcccagacgttacattatttattttcaaaacaatttcaaaatgtaccatatgattttttaatgcttgcattgaaattttcatcttttaatgtcagacatgaaactatatacacatataatttaatgcagtatgctaatacattgtcaatgtaattaactaattaactatattggaataaggtatgcactgagaaatttttgcaaatcaaagtattatatttctggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttaaaaagtggatcaatccaggttcgtgctgagataatgttcccttcccatgagtggaaagaatcggcgctggcattcaatatcggtgcattgtgacgtcaaatgtttttgactgtaacaaatgagattgcgactgctgtatatttcgaattttttactctatgttctgtggtat
gi|14 : g---------T-AA----TACA--A--G---AA-TGGATTTGA-AACC----TT------------------TGTT-CCC-----AC-GA--GTG-------GA--AA--GA-AT---CGGCGCT-GGCATTCAAAAG--G-GCGTTGCATTG---TGAACG------TCAAATG-TTTT---GAACT--GT--AACtgcaataatagacatttggtaaaaca
gi|1 : A--A--A---AAGTGGAT--CA-ATCCA-GGTTC-GT--GC-TGAG-ATAATGTT-CCCTTCCCAT-GA--GTG-------GA--AA--GA-AT---CGGCGCT-GGCATTC--AAT--A-TCGGTGCATTG---TG-ACG------TCAAATGTTTTT---G-ACT--GT--AACAAAT----G-------------AGATTGC-----G--ACTGCT-GT----ATAT--TTC--GA---AT--TTT-TTACTCTA-TGTTCTGTGGTATgccga
gi|3 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatactaacctgtatctgctctaccaagtccaaaacatttggatcccgcgtcgactcaatgccacgaccaattgaatgccagcgctgtgtatgtccttttcactacttcatcgttagaggtaacattttctcagcacgaacctgaattgaaattgacttgcattgatgcattcaagatgcataataatagaaatttggtaaaacatattcagaataagtccgaaagatattaaagggggggggggggggggcatatttcaaatcgtattcagaaacgaaagtatgagctaggtgaataagatattttgattaaaaatccacagtccgatataaaattttaaaagaaattttttaaattggacattcttttattaaaatcacacgcgctctcaattacaaattcccagacgttacattatttattttcaaaacaatttcaaaatgtaccatatgattttttaatgcttgcattgaaattttcatcttttaatgtcagacatgaaactatatacacatataatttaatgcagtatgctaatacattgtcaatgtaattaactaattaactatattggaataaggtatgcactgagaaatttttgcaaatcaaagtattatatttctggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttAATGAATTTCA-ATCCACGGTTC-GT--GC-TGAG-AGAATGTT-CCC-----AC-GA--GTG-------TA--AA--TA-AT---CTGCGCT-GGCATTC--AAT--G-TCGGTGCATTG----G-ACG------TCAAATG-TTTTTTGA-ACT--GT--AACATAT---GA-------------AGA-TAC-----G--ACCACT-GT----ATAT--TTCGGGA---AT--TTTGTTACTCTATTGTTCCGTG
gi|11 : acgAGTGGAT--CA-ATCCA-GGTTC-GC--GC-AGAG-AAAATGTT-CCC-----AC-GG--TTG-------GA--AA--GA-AT---CGGCACT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGAT---GG-------------AGATTAC-----G--ACCGCT-GT----ATAT--TTC--GA---AT--TTTGTTACTCTA-TGTTCCGTGGcaagattgcataataataaacatttggtcaaacatattcagaacagggtccgaaaagactattaattaatcgggggtcgggggcaatattccaattcgtatcaatcacgaaagtatgagctaggtgaatatagtaattttgataaaaatccacagtcccgatataaagttttaaaagaatgttttataaattggacattcttttaatcaacacgcactcttcaattataaattccaggcgttacttatttaattttccaaaaaacaattttcaaatgtatccatatgatgttttagtgcttacgttgaaattttcatcttttaatgtcaagcatatgaacttatatgacacatataattgttaaacgcaggtatggttattaacgattataaacgtgctaatgctttgtaaaatgtaatttaacttaattactataattgtaataagtatgcatgagaaataatcgcaatttctgaaaaacaccctttaatgaatacacgggtgataccgtggttgattatctgatttcaaagttaatatttaaataggataggggcctgatcaaaaatcagtttgctaactgcaaaatggatcagcctaaaccggattgaaattgaatttaaaccccccccctggtttgtaatatcttaata
gi|13 : CC-----AC-GA--GTGT------GA--CA--GA-AT---CAGCGCT-GACATTC---AT--GACCATTGCATTA---TT-ACG------TAAAATC-TTTA---G-ACT--GT--AACGGAT---GA-------------AGAGCAC-----G--ATTACT-GT----ATAT--TTC-------ATTGTTTGCCACTGAA-TGTTCCCTGGT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): TTTAAAAAATGGCACAGTCCGATATAAAAGTTGGAGTTTTCTTCTTTAATGGACATTTTTTTCATGGCGCGACCTTTCATTTTGAAAATCTCGTGTTTACATCATTCGATTCAAACAATTAAAAATGTTGCCATTGAGTTGTTTTTTTTTTTAATTGAAAGGGCTTGCGTTGAAATTTTCAT
Unaligned ( gi|15 ): TCAAAATGTACCATTTGAGGGTTCTTTTTTTTAATGAAGGTGCTTGTGTTTTAATTTTCATTTTGTAGGTGTTGTCTTTTAATATAAATATACCTACAATTTAA
Alignments
lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 333333333 2222 1 1 22222 22222 7777777777 33333333 22222 1 111 222 1 1 2 11111 11111 2222 555555555 44444444444444444444444444 33333333333333 2222 11 11 22222222222222222 111 1111 11111 11 11 11111 11 1111111111 1 33333333 111 333333333 11 8888888888888888888888888888888888 1 111 22222 333333333333333333333333333333333333333 1111 22222222222 1111 111111 11 222222222222222222 11111 111111 111 11111
lowQualScore : 0 333333333 1111 0 2 0 555 77777 5 88 0 0 2 33333 2 88888 3333333333 66666666 55555 0 3 333 11 222 3 3 1 0 7 0 6 3 6 6 6 66666 66666 6 6 0 8 88 8 0 8888 666 7 000000000 77777777777777777777777777 33333333333333 7777 5 55 11 66666666666666666 6 6 99 8 0 5 3 444 8 5 1 5 5 555 5 7777 5 66 3 5 66 22222 5 66 66 5 5 44 11 5 5 66666 3 0 22 1 5555555555 77 1 33 99 11111111 6 6 111 222222222 11 8 33 2222222222222222222222222222222222 0 111 55 3 0 0 00000 8 111111111111111111111111111111111111111 4444 0 22222222222 2222 0 77 444444 33 4 4 4 66 4 4 4 000000000000000000 4 55 00000 4 99 55 4 777 4 111111 4 111 4 55 55 66 22222 5 77 77 0 5
lowQualScore : . ......... .... . . . ... ..... . .. . . . ..... . ..... .......... ........ ..... . . ... .. ... . . . . . . . . . . . ..... ..... . . . . .. . . .... ... . ......... .......................... .............. .... . .. .. ................. . . .. . . . . ... . . . . . ... . .... . .. . . .. ..... . .. .. . . .. .. . . ..... . . .. . .......... .. . .. .. ........ . . ... ......... .. . .. .................................. . ... .. . . . ..... . ....................................... .... . ........... .... . .. ...... .. . . . .. . . . .................. . .. ..... . .. .. . ... . ...... . ... . .. .. .. ..... . .. .. . .
lowQualScore : 2 555555555 2222 0 2 0 888 44444 6 88 8 8 0 88888 5 55555 2222222222 22222222 00000 0 2 777 77 333 3 3 0 7 0 8 7 2 7 7 7 77777 77777 7 7 8 0 88 0 8 0000 888 8 888888888 33333333333333333333333333 66666666666666 5555 2 88 00 00000000000000000 7 7 22 0 8 6 8 000 0 7 4 7 7 999 0 9999 0 99 2 0 99 55555 0 99 99 0 0 11 99 7 7 99999 0 1 11 4 1111111111 99 4 00 22 55555555 7 7 777 777777777 00 0 55 5555555555555555555555555555555555 0 000 88 2 8 8 00000 0 888888888888888888888888888888888888888 8888 8 99999999999 1111 1 99 444444 66 4 4 4 11 4 4 4 777777777777777777 0 55 00000 0 55 55 0 000 0 555555 0 000 0 55 55 11 55555 7 99 99 7 7
consensus : CGATTCTTTCCAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACC-TGGATTGAAATTGACTTGCATTGATGCATTCAAGATTGCA-TAATAATAGACATTTGGTAAAACATATTCAGAACAAG----GTCCGAAAGA---TATTAA-----CG---GGGGG--------GGGGGG-----C-ATATTTCAAATTCGTATTCAGA-ACGAAAGTATGA-GCTAGGTG-AATAAGATA-TTTTGATTAAAAATC-CACAGT-CCGATATAAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGGACATTCTTTTA-----ATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTT-ACA-TTATTT-ATTTTTC---AAAACAATTTCAAAATGT-A-CCATATGA---------TTTTTT----------A------GT-------GCTTGCGTTGAAATTTTCA--------------TCTTTTAA----TGTCAGAC--ATGANAC---TATAATA-------T-ACACATATAATT-T--AACGCA-GTATGGTTANT---AAC-GATTA-AAACGTTGCT-AGTACATT-GT-A-AATGT-AATT--AACTTAATT-ACT--ATAATTGGAATAA-GG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCC-TTTAATGAAT---ACACGGGTGATAC-CGTGGT---TT-ATTGAATTTC--AAAA-AGTTAAT--ATTT-A------A-AATA-GA---TACTG-GCG--CTGA--T-CAGAAACTGCAGTTT---T-----------GT-ACTG-----T------GATCAG-CTAG-A-CGGATTGAAATTGAATTTTAAAAAATG-----CCCCC-CCC-----------------CC-------C------------GGTT--T-AATATCT---------T-AA----TACA--A--A---AAGTGGATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCC-----ACG-------G--GTG-GA--AAGAAT-----CGGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGTAT
Reference ( family-2908 ) : CGATTCTTTCCAC-T-------CGT----GGGAA-CATTTTCTCAGCACGAACC-TGGATTGAAATTGACTTGCATTGATGCATTCAAGATTGCA-TAATAATAGACATTTGGTAAAACATATTCAGAACGAG----GTCCGAAA-A---TATTAA-----CA---GGGGG--------GGGGGG-----C-ATATTTCAAATTCGTATCNANANACGAAAGTATGA-GCTAGGTG-AATANGGTANTTTTGATTAAAAATC-CACAGT-CCGATATAAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGGACATTCTTTTA-----ATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTT-ACA-TTATTT-ATTTTT----AAAACAATTTCAAAATGT-A-CCATATGA---------TTTTTT----------A------GT-------GCTTGCGTTGAAATTTTCA--------------TCTTTTAA----TGTCAGAC--ATGANAC---TATAATA-------T-ACACATATAATT-T--AACGCA-GTATGGTTANT---AAC-GATTA-AAACGTTGCT-AGTACATT-GT-A-AATGT-AATT--A-CTTAATT-ACT--ATAATTGGAATAA-GG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCC-TTTAATGAAT---ACACGGGTGATAC-CGTGGT---TT-ATTGAATTTC--AAAA-AGTTAAT--ATTT-A------A-AATA-GA---TACTG-GCG--TTGA--T-CAGAAACTGCAGTTT---T-----------GT-ACTG-----T------GATCAG-CTAA-A-CGGATTGAAATTGAATTTTAAAAAATG-----CCCCC-CCC-----------------CC-------C------------GGTT--T-AATATCT---------T-AA----TACA--A--A---AAGTGGATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCC-----ACG-------G--GTG-GA--AAGAAT-----CGGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGTAT
gi|1 : ATCT---------TGAA----TGCATCA--ATGCAAGTCAATTTCA-ATTCA-GGTTC-GT--GC-TGAG-AAAATGTT-ACCTCTA-ACGATGAAGTA--GTG-AA--AAGGACATACACAGCGCT-GGCATTC--AATTGG-TCGTGGCATTGAGTCG-ACGCGGGATCCAAATG-TTTTG--G-ACTTGGTAGAGCAGATACAGGT--TA
gi|1 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatacTCCTTTTCAC-TACTTCATCGTTAGAGGTAA-CATTTTCTCAGCACGAACC-TGAATTGAAATTGACTTGCATTGATGCATTCAAGAT-GCA-TAATAATAGAAATTTGGTAAAACATATTCAGAATAAG-----TCCGAAAGA---TATTAA-----AG---GGGGG--------GGGGGGGGGGGC-ATATTTCAAAT-CGTATTCAGAAACGAAAGTATGA-GCTAGGTG-AATAAGATA-TTTTGATTAAAAATC-CACAGT-CCGATATAAA-ATTTTAAAAGAA-ATTTTTT-----AAATTGGACATTCTTTTATTAAAATC-ACACGCGCTC-TCAATTACAAATTCCCAGACGTT-ACA-TTATTT-ATTTTC----AAAACAATTTCAAAATGT-A-CCATATGA---------TTTTTT----------A------AT-------GCTTGCATTGAAATTTTCA--------------TCTTTTAA----TGTCAGAC--ATGAAAC---T---ATA-------T-ACACATATAATT-T--AATGCA-GTA---------------------------TGCT-AATACATT-GT-C-AATGT-AATT--A-ACTAATTAACT--AT-ATTGGAATAA-GG--TATGC-----ACT--GA--GAAATT-TTTGCAAATCAAAGTATTATATTTCTG--GAgcataataatagaaatttggtaaaacatattcagaataagtccgaaagatattaaagggggggggggggggggcatatttcaaatcgtattcagaaacgaaagtatgagctaggtgaataagatattttgattaaaaatccacagtccgatataaaattttaaaagaaattttttaaattggacattcttttattaaaatcacacgcgctctcaattacaaattcccagacgttacattatttattttcaaaacaatttcaaaatgtaccatatgattttttaatgcttgcattgaaattttcatcttttaatgtcagacatgaaactatatacacatataatttaatgcagtatgctaatacattgtcaatgtaattaactaattaactatattggaataaggtatgcactgagaaatttttgcaaatcaaagtattatatttctggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttaaaaagtggatcaatccaggttcgtgctgagataatgttcccttcccatgagtggaaagaatcggcgctggcattcaatatcggtgcattgtgacgtcaaatgtttttgactgtaacaaatgagattgcgactgctgtatatttcgaattttttactctatgttctgtggtat
gi|1 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatactaacctgtatctgctctaccaagtccaaaacatttggatcccgcgtcgactcaatgccacgaccaattgaatgccagcgctgtgtatgA--A--A---AAGTGGAT--CA-ATCCA-GGTTC-GT--GC-TGAG-ATAATGTT-CCCTTCCCATG-------A--GTG-GA--AAGAAT-----CGGCGCT-GGCATTC--AAT--A-TCGGTGCATTG---TG-ACG------TCAAATGTTTTT---G-ACT--GT--AACAAAT-GAGAT--TGCG-----ACTGCT-GTATATTTC--GAAT--TTT-TTACTCTA-TGTTCTGTGGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttaaaaagtggatcaatccaggttcgtgctgagataatgttcccttcccatgagtggaaagaatcggcgctggcattcaatatcggtgcattgtgacgtcaaatgtttttgactgtaacaaatgagattgcgactgctgtatatttcgaattttttactctatgttctgtggtat
gi|10 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatactaacctgtatctgctctaccaagtccaaaacatttggatcccgcgtcgactcaatgccacgaccaattgaatgccagcgctgtgtatgtccttttcactacttcatcgttagaggtaacattttctcagcacgaacctgaattgaaattgacttgcattgatgcattcaagatgcataataatagaaatttggtaaaacatattcagaataagtccgaaagatattaaagggggggggggggggggcatatttcaaatcgtattcagaaacgaaagtatgagctaggtgaataagatattttgattaaaaatccacagtccgatataaaattttaaaagaaattttttaaattggacattcttttattaaaatcacacgcgctctcaattacaaattcccagacgttacattatttattttcaaaacaatttcaaaatgtaccatatgattttttaatgcttgcattgaaattttcatcttttaatgtcagacatgaaactatatacacatataatttaatgcagtatgctaatacattgtcaatgtaattaactaattaactatattggaataaggtatgcactgagaaatttttgcaaatcaaagtattatatttctggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttTAATACGCATGGT---TT-ATTGAATTTA--AAAACAG---ATCCATTT-GCGCCTGA-AGTG-GAATCTACGA-GCGGATTGAAAT-CAGAAACTACAGTTT---TTGTGTGGGCATGT-TCTG-----T------GATCAG-CTAA-A-CGGATTGAAATTTAATTTT-AAAAATG-----TCTCC-C
gi|11 : AGTGGAT--CA-ATCCA-GGTTC-GC--GC-AGAG-AAAATGTT-CCC-----ACG-------G--TTG-GA--AAGAAT-----CGGCACT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGtaggttttaatct
gi|12 : TAGCT---------T-AAAGTGTACA--A--A---AAGTGGAT--CACATCCA-GGTTCCGT--GC-TGAGGAAAATGTC-CCC-----A---------G--TTG-GATAAAGAAT-----CGGCGCTTGGCATTC--AAT--G-TCGATGCAACG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----AC
gi|13 : tggcCC-----ACG-------A--GTGTGA--CAGAAT-----CAGCGCT-GACATTC--A-T--GACCATTGCATTA---TT-ACG------TAAAATC-TTTA---G-ACT--GT--AACGGATGAAGAG--CACG-----ATTACT-GTATATTTC----ATTGTTTGCCACTGAA-TGTTCCCTGGT
gi|14 : a---------T-AA----TACA--A--G---AA-TGGATTTGA-AACC----TT------------------TGTT-CCC-----ACG-------A--GTG-GA--AAGAAT-----CGGCGCT-GGCATTCAAAAG--G-GCGTTGCATTG---TGAACG------TCAAATG-TTTT---GAACT--GT--AAC
gi|15 : TCAAAATGT-A-CCATTTGAGGGTTCTT-TTTTTT----------AATGAAGGT-------GCTTGTGTTTTAATTTTCA--------------TTTTGTAGGTGTTGTC-------TTTTAA---TATAA-A-------T-ATACCTACAATT-T--AAgccga
gi|16 : GT-AATT--AACTTAATT-ACT--ATAATTGGAATAC-AG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTCA-TATATTTTTG--AAAAC-ACCC-TTTAATGAAT---ACACGGGTG
gi|17 : TTGCA--GATGCATT-------GCAGCAATGATAGAT------TAA-------TCCGAACGAGCTAGGTCCAAAAGA---TATTAAAAC--CATTTGGGGGGGGAGGGGGGGGGG-----C-ATTTTTTAA
gi|17 : TTAAAAAATG-----CCCCC-CCC-----------------CC-------TCCCCCCCCAAATGGTT--TTAATATCT---------T-
gi|18 : ttgcagatgcattgcagcaatgatagattaatccgaacgagctaggtccaaTGATTAAGAATT-CA--GT-CCGATATAAA-GTTTTGAAAGAA-AATTTAT-----AAATTGGACCTTCTTTTA-----ATC-GCACGCGCTC-TCAATTACAA
gi|19 : TGTTTCTG--AAAAC-ACTG-TT-AATGAATTATATACAGGTGATACGCGTGAT---TT-AATGAATTTC--AAAA-AGTTAA
gi|2 : tacCGATTCATTCCAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACC-TGGATTGAAATTGCTTTGCATTGATGCATTCAAGATTGCA-TAATAATAGACATTTGGTAAAACATATTCAGAACAAG----GTC-GAAG-A---TATTAA----------AGGGG--------GGGGGG-----C-ATATTTCAA--TCGTATTCAGA-ACGAAAGTATGAAGCTAGGTGGAATAAGATA--TTTGATTAAAAATC-CAC-GT-CCGATATAAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGGACCTTCTTTTA-----ATC-ACATGTG-TC-TCAATTACAAATTCCCAGGCGTT-ACATTTATTT-ATTTTTCA--AAAACAATTTCAAAA-GT-A-CCATAT-A---------TTTTTT----------A------GT-------GCTTACTTTGAAATTTTCA--------------TCTTTTAAT---TGTCA-AC--ATGAAAC---TATAA-A-------T-ACACATATAATT-T---ACACA-GTATGG-TAAT---AAC-GATTA-AAACGTTGCT-AATACATT-GT-A-AATGT-AATT--A-CTTAATT-TCT--ATAATTGGAATAA-GG--TA-GC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA--ATATTTCTG--AAAAC-ATCC-TTTAATGAAT---ACATGGGTGATAC-CGTGGT---TT-ATTGAATTTCCGAAAA-AGTTAAT--ATTT-A------AGAATA-GA---TA----GC---CTGA--T-CAGAAACTGCAGTTT---T-----------GT-ACTGCAAAAT------GATCAG-CTAG-A-CAGATTGAAATTGAATTTTAAAAAATG-----CCCCC-CCC-----------------CC-------C------------GGTT--T-AATATCT---------T-AA----TACA--A--A---AAGTGGATATCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCC-----ACA-------G--ATG-GA--AAGAAT-----CAGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACA-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCATGGTAT
gi|3 : AATGAATTTCA-ATCCACGGTTC-GT--GC-TGAG-AGAATGTT-CCC-----ACG-------A--GTG-TA--AATAAT-----CTGCGCT-GGCATTC--AAT--G-TCGGTGCATTG----G-ACG------TCAAATG-TTTTTTGA-ACT--GT--AACATATGAAGA---TACG-----ACCACT-GTATATTTCGGGAAT--TTTGTTACTCTATTGTTCCGTG
gi|3 : acgGATTATTTACAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACCGTGGATTGAAATT--------------CATTCAAGATTGCA-TAATAATAAACATTTGGTCAAACATATTCAGAACAGG----GTCCGAAA-AGACTATTAATTAATCG---GGGGT--------CGGGGG-----CAATATTCC-AATTCGTATCAAT-CACGAAAGTATGA-GCTAGGTG-AATATAGTAATTTTGA-TAAAAATC-CACAGTCCCGATATAAA-GTTTTAAAAGAATGTTTTAT-----AAATTGGACATTCTTTTA-----ATCAACACGCACTCTTCAATTATAAATT-CCAGGCGTT-AC--TTATTT-AATTTTCCAAAAAACAATTTTCAAATGT-ATCCATATGA---------TGTTTT----------A------GT-------GCTTACGTTGAAATTTTCA--------------TCTTTTAA----TGTCAAGCATATGA-AC---T-T-ATA-------TGACACATATAATTGTTAAACGCAGGTATGGTTATT---AAC-GATTATAAACG-TGCT-AATGCTTT-GTAA-AATGT-AATTTAA-CTTAATT-ACT--ATAATTGTAATAA--G--TATGC-----A-T--GA--GAAA-TAATCGCA--------------ATTTCTGA-AAAAC-ACCC-TTTAATGAAT---ACACGGGTGATAC-CGTGGTTGATT-ATCTGATTTC----AA-AGTTAAT--ATTT--------A-AATAGGA---TAGGG-GC---CTGA--T-CAAAAAT--CAGTTT---G-----------CTAACTG-----CAAAATGGATCAGCCTAA-ACCGGATTGAAATTGAA-TTTAAA-----------CCCC-CCC-----------------CC-------T------------GGTTTGT-AATATCT---------T-AA----TAcaagattgcataataataaacatttggtcaaacatattcagaacagggtccgaaaagactattaattaatcgggggtcgggggcaatattccaattcgtatcaatcacgaaagtatgagctaggtgaatatagtaattttgataaaaatccacagtcccgatataaagttttaaaagaatgttttataaattggacattcttttaatcaacacgcactcttcaattataaattccaggcgttacttatttaattttccaaaaaacaattttcaaatgtatccatatgatgttttagtgcttacgttgaaattttcatcttttaatgtcaagcatatgaacttatatgacacatataattgttaaacgcaggtatggttattaacgattataaacgtgctaatgctttgtaaaatgtaatttaacttaattactataattgtaataagtatgcatgagaaataatcgcaatttctgaaaaacaccctttaatgaatacacgggtgataccgtggttgattatctgatttcaaagttaatatttaaataggataggggcctgatcaaaaatcagtttgctaactgcaaaatggatcagcctaaaccggattgaaattgaatttaaaccccccccctggtttgtaatatcttaata
gi|4 : acgcacggaacaatagagtaacaaaattcccgaaatatacagtggtcgtatcttcatatgttacagttcaaaaaacatttgacgtccaatgcaccgacattgaatgccagcgca-AAACGTTGCTTAGTACATTCGT-ACAATGTTAATT--AACTTAATT-ACTCAATAATTG-AATAACGG--TCTGC-----A-TCTGACAGAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCCCTTTAATGA---------------TAC-CG-GGT---------------C--AAAACAGTTTAA--ATTT-A------A-AATA-AA---TACTGCGC---CTGA--T-CAGAAACTGCACATTCTCT-----------GT-ACTT-----T------GATCAG-CGAGGA-CGGATTGAAAT--ATTTTTAAAAAATATGTTCCCCCCACCCTGTTTAATATTTTTGGACCTCGTTTGC------------GGAT--T-AA-ATCTGGCCACATCC-AA----TATC--A--A---AGATGA---CCA-A-CCA-GGTTC-GTTTGCCTGAG-AAAATGTT-CC------ACG-------GTGACG-GA--AAGAAT-----CG---------ATTC--AAG--G-TTGGTGCATTG---TG-ACG------TCGAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACGAATAAACCGCTGGTATATTTC--GAAT--TT--TTACTCTA-
gi|5 : TTAAAAATT-CACAGT-CCGGTATGAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGAACATTCTTTTA-----ATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTT-ATA-TTATTT-ATTTTT----AAAACAATTTCAAAATGT-A-CCATTTGA---------TTTTTTTGTTAATGAAA------GT-------GCTTGCGTTGAAATTTTCATTTAGTTGGTGTTTTCTTTTCA----TGTTAGAC--ATG-CACTGATACAATA-------T-ACACATACAATT-T--AACGCA-GTATGGTTATT---AAC-TATTA-AAACGTTGGT-AGTACATT-GT-A-AATGC-AATTA-A-CTTAATT-ACT--CTAATTGGAATAA-GGTATATGC-----A-T--GA--GAAA-T-TTctgat
gi|6 : GTTGGTGTTTT----------------TCTTTTAAA---TGTCAGACC-ATGATAC---AATAATAACAATAAT-ACACATATAATT-T--AATGCA-GTATGGTTAATTCAAACTGATTA-AAACGTTGAT-AGTA-A-T-GT-A-AATGC-AATA--A-CTTAATT-ATT--AT-ATTGG-ATAA-GG--TATATGTTAAA-T--GA--GAGA-T-TT-GTAAATCAAGTTA--ATATTTCTGAAAAAACAACCC-TTTAATGAAT---TTA-AGGTGATA--CGTGAT---TTAATTGAATTTC--AAAA-AGT--AT--------------A-ACTA-GA---TACT--GCG--TTGA--TGCAGAAtatatttc
gi|7 : ttgaaatttttatataATCT---------TGAA----T-CA--ATGC---AAGTCAATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AGAATGTTTCCC-----ACGA------G--GTG-GA--AAGAA------CGGCGC--GGTATTCC-AAT--G-TCAGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGATTATATG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGT
gi|7 : gTTCTTTCCACCT-------CGT----GGGAAACATTCTCTCAGCACGAACC-TGGATTGAAATTGACTTGCATTG----ATTCAAGATTGC---AATAATAGACATTTGGTAAAACAtgcaataatagacatttggtaaaaca
gi|8 : gaccacggaacatagagtaacaaaattcgaaatatacagcggtcatataatctccatctgttacagtcaaaacatttgacgtcacaatgcactgacattggaataccgcgccgAAAAATGGCACAGT-CCGATATAAAAGTT------GGA-GTTTTCTTCTTTAA--TGGACATTTTTTTC-----ATG-GCGCGACCTT-TCATTTTGAAAATCTC--GTGTTTACA-TCATTCGATTC-------AAACAATT-AAAAATGTTG-CCAT-TGAGTTGTTTTTTTTTTT----------A------ATTGAAAGGGCTTGCGTTGAAATTTTCA--------------T
gi|9 : ttta-AAACGTTGCT-AGTACATT-GT-A-AATGT-AATT--AACTTAATT-ACT--ATAATTGGAATAA-GG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCC-TTTAATGAAT-----ACGGG--------------------------TTC--AAAA-AGTTAAT--ATTTAA------A-AATA-GA---TACT
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 333333333 2222 1 1 11 111 1 11 888888888888888888 22222 1 22 1 1 1 1 11111 11111 1111 555555555 44444444444444444444444444 33333333333333 2222 11 11 22222222222222222 1111111 11111 11 11 11111 11 1111111111 1 222222222 111 333333333 11 8888888888888888888888888888888 1 111 2222222 1 11111111111111111111111111 11 22222222222 1111 111111 11 222222222222222222 11111 111111 111 11111
lowQualScore : 0 333333333 1111 0 0 555 77777 5 88 11 0 0 2 222 0 33 555555555555555555 55555 0 3 22 3 3 3 3 3 0 6 3 6 6 6 66666 66666 6 6 0 8 0 8 8 6 0 9999 8 666 7 000000000 77777777777777777777777777 33333333333333 0000 6 5 55 11 66666666666666666 6 6 99 8 0 5555555 8 5 1 5 5 555 5 5 5 66 3 5 66 22222 5 66 66 5 5 44 11 5 5 66666 3 0 22 1 5555555555 77 1 33 99 666666666 6 6 111 222222222 11 8 33 2222222222222222222222222222222 0 111 55 3 3 3 5555555 0 66666666666666666666666666 88 3 77777777777 2222 0 77 444444 33 4 4 4 66 4 4 4 000000000000000000 4 55 00000 4 99 55 4 777 4 111111 4 111 4 55 55 66 22222 5 77 77 0 5
lowQualScore : . ......... .... . . ... ..... . .. .. . . . ... . .. .................. ..... . . .. . . . . . . . . . . . ..... ..... . . . . . . . . . .... . ... . ......... .......................... .............. .... . . .. .. ................. . . .. . . ....... . . . . . ... . . . .. . . .. ..... . .. .. . . .. .. . . ..... . . .. . .......... .. . .. .. ......... . . ... ......... .. . .. ............................... . ... .. . . . ....... . .......................... .. . ........... .... . .. ...... .. . . . .. . . . .................. . .. ..... . .. .. . ... . ...... . ... . .. .. .. ..... . .. .. . .
lowQualScore : 2 555555555 2222 0 0 888 44444 6 88 00 6 8 5 888 0 88 000000000000000000 00000 0 2 77 3 3 3 3 2 8 7 2 7 7 7 77777 77777 7 7 8 0 8 0 0 0 8 0000 0 888 8 888888888 33333333333333333333333333 66666666666666 8888 7 2 88 00 00000000000000000 7 7 22 0 8 0000000 0 7 4 7 7 999 0 0 0 99 2 0 99 55555 0 99 99 0 0 11 99 7 7 99999 0 1 11 4 1111111111 99 4 00 22 555555555 7 7 777 777777777 00 0 55 5555555555555555555555555555555 0 000 88 2 2 2 5555555 0 77777777777777777777777777 33 2 44444444444 1111 1 99 444444 66 4 4 4 11 4 4 4 777777777777777777 0 55 00000 0 55 55 0 000 0 555555 0 000 0 55 55 11 55555 7 99 99 7 7
consensus : CGATTCTTTCCAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACC-TGGATTGAAATTGACTTGCATTGATGCATTCAAGATTGCA-TAATAATAGAC--ATTTGGTAAAACATATTCAGAACAAGGTCCG-AAAGA-TATT--AA-----C------------GGGG-----GGGGGGGGC-ATATTTCAAA-TCGTATTCAG-AACGAAAGTATGA-GCTAGGTG-AATA-AGATATTTTGATTAAAAATC-CACAGT-CCGATATAAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGGACATTCTTTT-----AATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTT-ACATT-ATTT-ATTTTTC---AAAA-CAATTTCAAAATGT-A-CCATATGA---------TTTTTT----------A------GT-------GCTTGCGTTGAAATTTTCA--------------TCTTTTAA----T-GTCAGAC--ATGANAC---TATAATA-------T-ACACATATAATT-T--AACGCA-GTATGGTTANT---AAC-GATTA-AAACGTTGCT-AGTACATT-GT-A-AATGT-AA-TTAACTTAATT-ACT--ATAATTGGAATAA-GG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCC-TTTAATGAAT---ACACGGGTGATAC-CGTGGT---TT-ATTGAATTTC--AAAA-AGTTAAT--ATT------T-AA-AATA-GA---TACTG-GCG--CTG--AT-CAGAAACTGCAGTTTCT---------TGT-ACTG-----T------GATCAG-CTAG-A-CGGATTGAAATTGAATTTTAAAAAATG-----CCCCC-CCC-----------------CC-------CGGTT--TAATATCT---------T-AA----TACA--A--A---AAGTGGATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCC-----ACG-------G--GTG-GA--AAGAAT-----CGGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGTAT
Reference ( family-2908 ) : CGATTCTTTCCAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACC-TGGATTGAAATTGACTTGCATTGATGCATTCAAGATTGCA-TAATAATAGAC--ATTTGGTAAAACATATTCAGAACAAGGTCCG-AAAGA-TATT--AA-----C------------GGGG-----GGGGGGGGC-ATATTTCAAATTCGTATTCAG-AACGAAAGTATGA-GCTAGGTG-AATA-AGATATTTTGATTAAAAATC-CACAGT-CCGATATAAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGGACATTCTTTT-----AATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTT-ACATT-ATTT-ATTTTTC---AAAA-CAATTTCAAAATGT-A-CCATATGA---------TTTTTT----------A------GT-------GCTTGCGTTGAAATTTTCA--------------TCTTTTAA----T-GTCAGAC--ATGANAC---TATAATA-------T-ACACATATAATT-T--AACGCA-GTATGGTTANT---AAC-GATTA-AAACGTTGCT-AGTACATT-GT-A-AATGT-AA-TTAACTTAATT-ACT--ATAATTGGAATAA-GG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCC-TTTAATGAAT---ACACGGGTGATAC-CGTGGT---TT-ATTGAATTTC--AAAA-AGTTAAT--ATT------T-AA-AATA-GA---TACTG-GCG--CTG--AT-CAGAAACTGCAGTTT-----------TGT-ACTG-----T------GATCAG-CTAG-A-CGGATTGAAATTGAATTTTAAAAAATG-----CCCCC-CCC-----------------CC-------CGGTT--TAATATCT---------T-AA----TACA--A--A---AAGTGGATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCC-----ACG-------G--GTG-GA--AAGAAT-----CGGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGTAT
gi|1 : ATCT---------TGAA----TGCATCA--ATGCAAGTCAATTTCA-ATTCA-GGTTC-GT--GC-TGAG-AAAATGTT-ACCTCTA-ACGATGAAGTA--GTG-AA--AAGGACATACACAGCGCT-GGCATTC--AATTGG-TCGTGGCATTGAGTCG-ACGCGGGATCCAAATG-TTTTG--G-ACTTGGTAGAGCAGATACAGGT--TA
gi|1 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatacTCCTTTTCAC-TACTTCATCGTTAGAGGTAA-CATTTTCTCAGCACGAACC-TGAATTGAAATTGACTTGCATTGATGCATTCAAGAT-GCA-TAATAATAGAA--ATTTGGTAAAACATATTCAGAATAAG-TCCG-AAAGA-TATT--AA-----A------------GGGGGGGGGGGGGGGGGC-ATATTTCAAA-TCGTATTCAGAAACGAAAGTATGA-GCTAGGTG-AATA-AGATATTTTGATTAAAAATC-CACAGT-CCGATATAAA-ATTTTAAAAGAA-ATTTTTT-----AAATTGGACATTCTTTTATTAAAATC-ACACGCGCTC-TCAATTACAAATTCCCAGACGTT-ACATT-ATTT-A-TTTTC---AAAA-CAATTTCAAAATGT-A-CCATATGA---------TTTTTT----------A------AT-------GCTTGCATTGAAATTTTCA--------------TCTTTTAA----T-GTCAGAC--ATGAAAC---T---ATA-------T-ACACATATAATT-T--AATGCA-GTA---------------------------TGCT-AATACATT-GT-C-AATGT-AA-TTAAC-TAATTAACT--AT-ATTGGAATAA-GG--TATGC-----ACT--GA--GAAATT-TTTGCAAATCAAAGTATTATATTTCTG--GAgcataataatagaaatttggtaaaacatattcagaataagtccgaaagatattaaagggggggggggggggggcatatttcaaatcgtattcagaaacgaaagtatgagctaggtgaataagatattttgattaaaaatccacagtccgatataaaattttaaaagaaattttttaaattggacattcttttattaaaatcacacgcgctctcaattacaaattcccagacgttacattatttattttcaaaacaatttcaaaatgtaccatatgattttttaatgcttgcattgaaattttcatcttttaatgtcagacatgaaactatatacacatataatttaatgcagtatgctaatacattgtcaatgtaattaactaattaactatattggaataaggtatgcactgagaaatttttgcaaatcaaagtattatatttctggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttaaaaagtggatcaatccaggttcgtgctgagataatgttcccttcccatgagtggaaagaatcggcgctggcattcaatatcggtgcattgtgacgtcaaatgtttttgactgtaacaaatgagattgcgactgctgtatatttcgaattttttactctatgttctgtggtat
gi|1 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatactaacctgtatctgctctaccaagtccaaaacatttggatcccgcgtcgactcaatgccacgaccaattgaatgccagcgctgtgtatgA--A--A---AAGTGGAT--CA-ATCCA-GGTTC-GT--GC-TGAG-ATAATGTT-CCCTTCCCATG-------A--GTG-GA--AAGAAT-----CGGCGCT-GGCATTC--AAT--A-TCGGTGCATTG---TG-ACG------TCAAATGTTTTT---G-ACT--GT--AACAAAT-GAGAT--TGCG-----ACTGCT-GTATATTTC--GAAT--TTT-TTACTCTA-TGTTCTGTGGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttaaaaagtggatcaatccaggttcgtgctgagataatgttcccttcccatgagtggaaagaatcggcgctggcattcaatatcggtgcattgtgacgtcaaatgtttttgactgtaacaaatgagattgcgactgctgtatatttcgaattttttactctatgttctgtggtat
gi|10 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatactaacctgtatctgctctaccaagtccaaaacatttggatcccgcgtcgactcaatgccacgaccaattgaatgccagcgctgtgtatgtccttttcactacttcatcgttagaggtaacattttctcagcacgaacctgaattgaaattgacttgcattgatgcattcaagatgcataataatagaaatttggtaaaacatattcagaataagtccgaaagatattaaagggggggggggggggggcatatttcaaatcgtattcagaaacgaaagtatgagctaggtgaataagatattttgattaaaaatccacagtccgatataaaattttaaaagaaattttttaaattggacattcttttattaaaatcacacgcgctctcaattacaaattcccagacgttacattatttattttcaaaacaatttcaaaatgtaccatatgattttttaatgcttgcattgaaattttcatcttttaatgtcagacatgaaactatatacacatataatttaatgcagtatgctaatacattgtcaatgtaattaactaattaactatattggaataaggtatgcactgagaaatttttgcaaatcaaagtattatatttctggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttTAATACGCATGGT---TT-ATTGAATTTA--AAAACAG---ATCCATTTGCGCCT-GA-AGTG-GAATCTACGA-GCGGATTGAAAT-CAGAAACTACAGTTTTTGTGTGGGCATGT-TCTG-----T------GATCAG-CTAA-A-CGGATTGAAATTTAATTTT-AAAAATG-----TCTCC-C
gi|11 : AGTGGAT--CA-ATCCA-GGTTC-GC--GC-AGAG-AAAATGTT-CCC-----ACG-------G--TTG-GA--AAGAAT-----CGGCACT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGtaggttttaatct
gi|12 : TAGCT---------T-AAAGTGTACA--A--A---AAGTGGAT--CACATCCA-GGTTCCGT--GC-TGAGGAAAATGTC-CCC-----A---------G--TTG-GATAAAGAAT-----CGGCGCTTGGCATTC--AAT--G-TCGATGCAACG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----AC
gi|13 : tggcCC-----ACG-------A--GTGTGA--CAGAAT-----CAGCGCT-GACATTC--A-T--GACCATTGCATTA---TT-ACG------TAAAATC-TTTA---G-ACT--GT--AACGGATGAAGAG--CACG-----ATTACT-GTATATTTC----ATTGTTTGCCACTGAA-TGTTCCCTGGT
gi|14 : a---------T-AA----TACA--A--G---AA-TGGATTTGA-AACC----TT------------------TGTT-CCC-----ACG-------A--GTG-GA--AAGAAT-----CGGCGCT-GGCATTCAAAAG--G-GCGTTGCATTG---TGAACG------TCAAATG-TTTT---GAACT--GT--AAC
gi|15 : TCAAAATGT-A-CCATTTGAGGGTTCTT-TTTTTT----------AATGAAGGT-------GCTTGTGTTTTAATTTTCA--------------TTTTGTAGGTGTT-GTC-------TTTTAA---TATAA-A-------T-ATACCTACAATT-T--AAgccga
gi|16 : GT-AA-TTAACTTAATT-ACT--ATAATTGGAATAC-AG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTCA-TATATTTTTG--AAAAC-ACCC-TTTAATGAAT---ACACGGGTG
gi|17 : TTGCA--GATGCATT-------GCAGCAATGATAGATTAATCCG----AAC-------GAGCTAGGTCCA-AAAGA-TATTAAAA-----CCATTTGGGGGGGGAGG-----GGGGGGGGC-ATTTTTTAA
gi|18 : TGATTAAGAATT-CA--GT-CCGATATAAA-GTTTTGAAAGAA-AATTTAT-----AAATTGGACCTTCTTTT-----AATC-GCACGCGCTC-TCAATTACAA
gi|19 : TGTTTCTG--AAAAC-ACTG-TT-AATGAATTATATACAGGTGATACGCGTGAT---TT-AATGAATTTC--AAAA-AGTTAA
gi|2 : tacCGATTCATTCCAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACC-TGGATTGAAATTGCTTTGCATTGATGCATTCAAGATTGCA-TAATAATAGAC--ATTTGGTAAAACATATTCAGAACAAGGTC---GAAGA-TATT--AA-------------------AGG-----GGGGGGGGC-ATATTTCAA--TCGTATTCAG-AACGAAAGTATGAAGCTAGGTGGAATA-AGATATTT-GATTAAAAATC-CAC-GT-CCGATATAAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGGACCTTCTTTT-----AATC-ACATGTG-TC-TCAATTACAAATTCCCAGGCGTT-ACATTTATTT-ATTTTTC---AAAAACAATTTCAAAA-GT-A-CCATAT-A---------TTTTTT----------A------GT-------GCTTACTTTGAAATTTTCA--------------TCTTTTAA----TTGTCA-AC--ATGAAAC---TATAA-A-------T-ACACATATAATT-T--A-CACA-GTATGGT-AAT---AAC-GATTA-AAACGTTGCT-AATACATT-GT-A-AATGT-AA-TTA-CTTAATT-TCT--ATAATTGGAATAA-GG--TA-GC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA--ATATTTCTG--AAAAC-ATCC-TTTAATGAAT---ACATGGGTGATAC-CGTGGT---TT-ATTGAATTTCCGAAAA-AGTTAAT--ATT------T-AAGAATA-GA---TA----GC---CTG--AT-CAGAAACTGCAGTTT-----------TGT-ACTGCAAAAT------GATCAG-CTAG-A-CAGATTGAAATTGAATTTTAAAAAATG-----CCCCC-CCC-----------------CC-------CGGTT--TAATATCT---------T-AA----TACA--A--A---AAGTGGATATCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCC-----ACA-------G--ATG-GA--AAGAAT-----CAGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACA-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCATGGTAT
gi|3 : AATGAATTTCA-ATCCACGGTTC-GT--GC-TGAG-AGAATGTT-CCC-----ACG-------A--GTG-TA--AATAAT-----CTGCGCT-GGCATTC--AAT--G-TCGGTGCATTG----G-ACG------TCAAATG-TTTTTTGA-ACT--GT--AACATATGAAGA---TACG-----ACCACT-GTATATTTCGGGAAT--TTTGTTACTCTATTGTTCCGTG
gi|3 : acgGATTATTTACAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACCGTGGATTGAAATT--------------CATTCAAGATTGCA-TAATAATAAAC--ATTTGGTCAAACATATTCAGAACAGGGTCCGAAAAGACTATT--AATTAATC------------GGGG-----GTCGGGGGCAATATTCC-AATTCGTATCAAT-CACGAAAGTATGA-GCTAGGTG-AATATAGTAATTTTGA-TAAAAATC-CACAGTCCCGATATAAA-GTTTTAAAAGAATGTTTTAT-----AAATTGGACATTCTTTT-----AATCAACACGCACTCTTCAATTATAAATT-CCAGGCGTT-AC-TT-ATTT-AATTTTCCAAAAAA-CAATTTTCAAATGT-ATCCATATGA---------TGTTTT----------A------GT-------GCTTACGTTGAAATTTTCA--------------TCTTTTAA----T-GTCAAGCATATGA-AC---T-T-ATA-------TGACACATATAATTGTTAAACGCAGGTATGGTTATT---AAC-GATTATAAACG-TGCT-AATGCTTT-GTAA-AATGT-AATTTAACTTAATT-ACT--ATAATTGTAATAA--G--TATGC-----A-T--GA--GAAA-TAATCGCA--------------ATTTCTGA-AAAAC-ACCC-TTTAATGAAT---ACACGGGTGATAC-CGTGGTTGATT-ATCTGATTTC----AA-AGTTAAT--ATT------T--A-AATAGGA---TAGGG-GC---CTG--AT-CAAAAAT--CAGTTT-----------GCTAACTG-----CAAAATGGATCAGCCTAA-ACCGGATTGAAATTGAA-TTTAAA-----------CCCC-CCC-----------------CC-------TGGTTTGTAATATCT---------T-AA----TAcaagattgcataataataaacatttggtcaaacatattcagaacagggtccgaaaagactattaattaatcgggggtcgggggcaatattccaattcgtatcaatcacgaaagtatgagctaggtgaatatagtaattttgataaaaatccacagtcccgatataaagttttaaaagaatgttttataaattggacattcttttaatcaacacgcactcttcaattataaattccaggcgttacttatttaattttccaaaaaacaattttcaaatgtatccatatgatgttttagtgcttacgttgaaattttcatcttttaatgtcaagcatatgaacttatatgacacatataattgttaaacgcaggtatggttattaacgattataaacgtgctaatgctttgtaaaatgtaatttaacttaattactataattgtaataagtatgcatgagaaataatcgcaatttctgaaaaacaccctttaatgaatacacgggtgataccgtggttgattatctgatttcaaagttaatatttaaataggataggggcctgatcaaaaatcagtttgctaactgcaaaatggatcagcctaaaccggattgaaattgaatttaaaccccccccctggtttgtaatatcttaata
gi|4 : acgcacggaacaatagagtaacaaaattcccgaaatatacagtggtcgtatcttcatatgttacagttcaaaaaacatttgacgtccaatgcaccgacattgaatgccagcgca-AAACGTTGCTTAGTACATTCGT-ACAATGTTAA-TTAACTTAATT-ACTCAATAATTG-AATAACGG--TCTGC-----A-TCTGACAGAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCCCTTTAATGA---------------TAC-CG-GGT---------------C--AAAACAGTTTAA--ATT------T-AA-AATA-AA---TACTGCGC---CTG--AT-CAGAAACTGCACATTCTC--------TGT-ACTT-----T------GATCAG-CGAGGA-CGGATTGAAAT--ATTTTTAAAAAATATGTTCCCCCCACCCTGTTTAATATTTTTGGACCTCGTTTGCGGAT--TAA-ATCTGGCCACATCC-AA----TATC--A--A---AGATGA---CCA-A-CCA-GGTTC-GTTTGCCTGAG-AAAATGTT-CC------ACG-------GTGACG-GA--AAGAAT-----CG---------ATTC--AAG--G-TTGGTGCATTG---TG-ACG------TCGAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACGAATAAACCGCTGGTATATTTC--GAAT--TT--TTACTCTA-
gi|5 : TTAAAAATT-CACAGT-CCGGTATGAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGAACATTCTTTT-----AATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTT-ATATT-ATTT-ATTTTT----AAAA-CAATTTCAAAATGT-A-CCATTTGA---------TTTTTTTGTTAATGAAA------GT-------GCTTGCGTTGAAATTTTCATTTAGTTGGTGTTTTCTTTTCA----T-GTTAGAC--ATG-CACTGATACAATA-------T-ACACATACAATT-T--AACGCA-GTATGGTTATT---AAC-TATTA-AAACGTTGGT-AGTACATT-GT-A-AATGC-AA-TTAACTTAATT-ACT--CTAATTGGAATAA-GGTATATGC-----A-T--GA--GAAA-T-TTctgat
gi|6 : GTTGGTGTTTT----------------TCTTTTAAA---T-GTCAGACC-ATGATAC---AATAATAACAATAAT-ACACATATAATT-T--AATGCA-GTATGGTTAATTCAAACTGATTA-AAACGTTGAT-AGTA-A-T-GT-A-AATGC-AA--TAACTTAATT-ATT--AT-ATTGG-ATAA-GG--TATATGTTAAA-T--GA--GAGA-T-TT-GTAAATCAAGTTA--ATATTTCTGAAAAAACAACCC-TTTAATGAAT---TTA-AGGTGATA--CGTGAT---TTAATTGAATTTC--AAAA-AGT--AT--------------A-ACTA-GA---TACT--GCG--TTG--ATGCAGAAtatatttc
gi|7 : ttgaaatttttatataATCT---------TGAA----T-CA--ATGC---AAGTCAATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AGAATGTTTCCC-----ACGA------G--GTG-GA--AAGAA------CGGCGC--GGTATTCC-AAT--G-TCAGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGATTATATG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGT
gi|7 : gTTCTTTCCACCT-------CGT----GGGAAACATTCTCTCAGCACGAACC-TGGATTGAAATTGACTTGCATTG----ATTCAAGATTGC---AATAATAGAC--ATTTGGTAAAACAtgcaataatagacatttggtaaaaca
gi|8 : gaccacggaacatagagtaacaaaattcgaaatatacagcggtcatataatctccatctgttacagtcaaaacatttgacgtcacaatgcactgacattggaataccgcgccgAAAAATGGCACAGT-CCGATATAAAAGTT------GGA-GTTTTCTTCTTTAA--TGGACATTTTTTT-----CATG-GCGCGACCTT-TCATTTTGAAAATCTC--GTGTTTACATC-ATTCGATTC-------AAA-CAATT-AAAAATGTTG-CCAT-TGAGTTGTTTTTTTTTTT----------A------ATTGAAAGGGCTTGCGTTGAAATTTTCA--------------T
gi|9 : ttta-AAACGTTGCT-AGTACATT-GT-A-AATGT-AA-TTAACTTAATT-ACT--ATAATTGGAATAA-GG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCC-TTTAATGAAT-----ACGGG--------------------------TTC--AAAA-AGTTAAT--ATT------TAAA-AATA-GA---TACT
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 333333333 2222 1 1 11 111 1 11 8888888888888888888888888888 1 1 1 1 1 1 11111 11111 1111 555555555 44444444444444444444444444 33333333333333 2222 11 11 22222222222222222 1111111 11111 11 11 11111 11 1111111111 1 222222222 111 333333333 11 6666666666666666666666666666666 1 111 2222222 1 11111111111111111111111111 11 22222222222 1111 111111 11 222222222222222222 11111 111111 111 11111
lowQualScore : 0 333333333 1111 0 0 555 77777 5 88 11 0 0 2 222 0 33 8888888888888888888888888888 0 6 3 3 3 3 3 0 6 3 6 6 6 66666 66666 6 6 0 8 0 8 8 6 0 9999 8 666 7 000000000 77777777777777777777777777 33333333333333 0000 6 5 55 11 66666666666666666 6 6 99 8 0 5555555 8 5 1 5 5 555 5 5 5 66 3 5 66 22222 5 66 66 5 5 44 11 5 5 66666 3 0 22 1 5555555555 77 1 33 99 666666666 6 6 111 222222222 11 8 33 6666666666666666666666666666666 0 111 55 3 3 3 5555555 0 66666666666666666666666666 88 3 77777777777 2222 0 77 444444 33 4 4 4 66 4 4 4 000000000000000000 4 55 00000 4 99 55 4 777 4 111111 4 111 4 55 55 66 22222 5 77 77 0 5
lowQualScore : . ......... .... . . ... ..... . .. .. . . . ... . .. ............................ . . . . . . . . . . . . . ..... ..... . . . . . . . . . .... . ... . ......... .......................... .............. .... . . .. .. ................. . . .. . . ....... . . . . . ... . . . .. . . .. ..... . .. .. . . .. .. . . ..... . . .. . .......... .. . .. .. ......... . . ... ......... .. . .. ............................... . ... .. . . . ....... . .......................... .. . ........... .... . .. ...... .. . . . .. . . . .................. . .. ..... . .. .. . ... . ...... . ... . .. .. .. ..... . .. .. . .
lowQualScore : 2 555555555 2222 0 0 888 44444 6 88 00 6 8 5 888 0 88 0000000000000000000000000000 0 0 3 3 3 3 2 8 7 2 7 7 7 77777 77777 7 7 8 0 8 0 0 0 8 0000 0 888 8 888888888 33333333333333333333333333 66666666666666 8888 7 2 88 00 00000000000000000 7 7 22 0 8 0000000 0 7 4 7 7 999 0 0 0 99 2 0 99 55555 0 99 99 0 0 11 99 7 7 99999 0 1 11 4 1111111111 99 4 00 22 555555555 7 7 777 777777777 00 0 55 0000000000000000000000000000000 0 000 88 2 2 2 5555555 0 77777777777777777777777777 33 2 44444444444 1111 1 99 444444 66 4 4 4 11 4 4 4 777777777777777777 0 55 00000 0 55 55 0 000 0 555555 0 000 0 55 55 11 55555 7 99 99 7 7
consensus : CGATTCTTTCCAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACC-TGGATTGAAATTGACTTGCATTGATGCATTCAAGATTGCA-TAATAATAGAC--ATTTGGTAAAACATATTCAGAACAAGGTCCG-AAAGA-TATT--AA-----C------------GGGG------GGGGGGGGC-ATATTTCAA-TCGTATTCAG-AACGAAAGTATGA-GCTAGGTG-AATA-AGATATTTTGATTAAAAATC-CACAGT-CCGATATAAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGGACATTCTTTT-----AATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTT-ACATT-ATTT-ATTTTTC---AAAA-CAATTTCAAAATGT-A-CCATATGA---------TTTTTT----------A------GT-------GCTTGCGTTGAAATTTTCA--------------TCTTTTAA----T-GTCAGAC--ATGANAC---TATAATA-------T-ACACATATAATT-T--AACGCA-GTATGGTTANT---AAC-GATTA-AAACGTTGCT-AGTACATT-GT-A-AATGT-AA-TTAACTTAATT-ACT--ATAATTGGAATAA-GG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCC-TTTAATGAAT---ACACGGGTGATAC-CGTGGT---TT-ATTGAATTTC--AAAA-AGTTAAT--ATT------T-AA-AATA-GA---TACTG-GCG--CTG--AT-CAGAAACTGCAGTTTNT---------TGTACTG-----T------GATCAG-CTAG-A-CGGATTGAAATTGAATTTTAAAAAATG-----CCCCC-CCC-----------------CC-------CGGTT--TAATATCT---------T-AA----TACA--A--A---AAGTGGATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCC-----ACG-------G--GTG-GA--AAGAAT-----CGGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGTAT
Reference ( family-2908 ) : CGATTCTTTCCAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACC-TGGATTGAAATTGACTTGCATTGATGCATTCAAGATTGCA-TAATAATAGAC--ATTTGGTAAAACATATTCAGAACAAGGTCCG-AAAGA-TATT--AA-----C------------GGGG------GGGGGGGGC-ATATTTCAAATCGTATTCAG-AACGAAAGTATGA-GCTAGGTG-AATA-AGATATTTTGATTAAAAATC-CACAGT-CCGATATAAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGGACATTCTTTT-----AATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTT-ACATT-ATTT-ATTTTTC---AAAA-CAATTTCAAAATGT-A-CCATATGA---------TTTTTT----------A------GT-------GCTTGCGTTGAAATTTTCA--------------TCTTTTAA----T-GTCAGAC--ATGANAC---TATAATA-------T-ACACATATAATT-T--AACGCA-GTATGGTTANT---AAC-GATTA-AAACGTTGCT-AGTACATT-GT-A-AATGT-AA-TTAACTTAATT-ACT--ATAATTGGAATAA-GG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCC-TTTAATGAAT---ACACGGGTGATAC-CGTGGT---TT-ATTGAATTTC--AAAA-AGTTAAT--ATT------T-AA-AATA-GA---TACTG-GCG--CTG--AT-CAGAAACTGCAGTTTCT---------TGTACTG-----T------GATCAG-CTAG-A-CGGATTGAAATTGAATTTTAAAAAATG-----CCCCC-CCC-----------------CC-------CGGTT--TAATATCT---------T-AA----TACA--A--A---AAGTGGATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCC-----ACG-------G--GTG-GA--AAGAAT-----CGGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGTAT
gi|1 : ATCT---------TGAA----TGCATCA--ATGCAAGTCAATTTCA-ATTCA-GGTTC-GT--GC-TGAG-AAAATGTT-ACCTCTA-ACGATGAAGTA--GTG-AA--AAGGACATACACAGCGCT-GGCATTC--AATTGG-TCGTGGCATTGAGTCG-ACGCGGGATCCAAATG-TTTTG--G-ACTTGGTAGAGCAGATACAGGT--TA
gi|1 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatacTCCTTTTCAC-TACTTCATCGTTAGAGGTAA-CATTTTCTCAGCACGAACC-TGAATTGAAATTGACTTGCATTGATGCATTCAAGAT-GCA-TAATAATAGAA--ATTTGGTAAAACATATTCAGAATAAG-TCCG-AAAGA-TATT--AA-----A------------GGGGGGGGGG-GGGGGGGC-ATATTTCAAATCGTATTCAGAAACGAAAGTATGA-GCTAGGTG-AATA-AGATATTTTGATTAAAAATC-CACAGT-CCGATATAAA-ATTTTAAAAGAA-ATTTTTT-----AAATTGGACATTCTTTTATTAAAATC-ACACGCGCTC-TCAATTACAAATTCCCAGACGTT-ACATT-ATTT-A-TTTTC---AAAA-CAATTTCAAAATGT-A-CCATATGA---------TTTTTT----------A------AT-------GCTTGCATTGAAATTTTCA--------------TCTTTTAA----T-GTCAGAC--ATGAAAC---T---ATA-------T-ACACATATAATT-T--AATGCA-GTA---------------------------TGCT-AATACATT-GT-C-AATGT-AA-TTAAC-TAATTAACT--AT-ATTGGAATAA-GG--TATGC-----ACT--GA--GAAATT-TTTGCAAATCAAAGTATTATATTTCTG--GAgcataataatagaaatttggtaaaacatattcagaataagtccgaaagatattaaagggggggggggggggggcatatttcaaatcgtattcagaaacgaaagtatgagctaggtgaataagatattttgattaaaaatccacagtccgatataaaattttaaaagaaattttttaaattggacattcttttattaaaatcacacgcgctctcaattacaaattcccagacgttacattatttattttcaaaacaatttcaaaatgtaccatatgattttttaatgcttgcattgaaattttcatcttttaatgtcagacatgaaactatatacacatataatttaatgcagtatgctaatacattgtcaatgtaattaactaattaactatattggaataaggtatgcactgagaaatttttgcaaatcaaagtattatatttctggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttaaaaagtggatcaatccaggttcgtgctgagataatgttcccttcccatgagtggaaagaatcggcgctggcattcaatatcggtgcattgtgacgtcaaatgtttttgactgtaacaaatgagattgcgactgctgtatatttcgaattttttactctatgttctgtggtat
gi|1 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatactaacctgtatctgctctaccaagtccaaaacatttggatcccgcgtcgactcaatgccacgaccaattgaatgccagcgctgtgtatgA--A--A---AAGTGGAT--CA-ATCCA-GGTTC-GT--GC-TGAG-ATAATGTT-CCCTTCCCATG-------A--GTG-GA--AAGAAT-----CGGCGCT-GGCATTC--AAT--A-TCGGTGCATTG---TG-ACG------TCAAATGTTTTT---G-ACT--GT--AACAAAT-GAGAT--TGCG-----ACTGCT-GTATATTTC--GAAT--TTT-TTACTCTA-TGTTCTGTGGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttaaaaagtggatcaatccaggttcgtgctgagataatgttcccttcccatgagtggaaagaatcggcgctggcattcaatatcggtgcattgtgacgtcaaatgtttttgactgtaacaaatgagattgcgactgctgtatatttcgaattttttactctatgttctgtggtat
gi|10 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatactaacctgtatctgctctaccaagtccaaaacatttggatcccgcgtcgactcaatgccacgaccaattgaatgccagcgctgtgtatgtccttttcactacttcatcgttagaggtaacattttctcagcacgaacctgaattgaaattgacttgcattgatgcattcaagatgcataataatagaaatttggtaaaacatattcagaataagtccgaaagatattaaagggggggggggggggggcatatttcaaatcgtattcagaaacgaaagtatgagctaggtgaataagatattttgattaaaaatccacagtccgatataaaattttaaaagaaattttttaaattggacattcttttattaaaatcacacgcgctctcaattacaaattcccagacgttacattatttattttcaaaacaatttcaaaatgtaccatatgattttttaatgcttgcattgaaattttcatcttttaatgtcagacatgaaactatatacacatataatttaatgcagtatgctaatacattgtcaatgtaattaactaattaactatattggaataaggtatgcactgagaaatttttgcaaatcaaagtattatatttctggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttTAATACGCATGGT---TT-ATTGAATTTA--AAAACAG---ATCCATTTGCGCCT-GA-AGTG-GAATCTACGA-GCGGATTGAAAT-CAGAAACTACAGTTTTTGTGTGGGCATGTTCTG-----T------GATCAG-CTAA-A-CGGATTGAAATTTAATTTT-AAAAATG-----TCTCC-C
gi|11 : AGTGGAT--CA-ATCCA-GGTTC-GC--GC-AGAG-AAAATGTT-CCC-----ACG-------G--TTG-GA--AAGAAT-----CGGCACT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGtaggttttaatct
gi|12 : TAGCT---------T-AAAGTGTACA--A--A---AAGTGGAT--CACATCCA-GGTTCCGT--GC-TGAGGAAAATGTC-CCC-----A---------G--TTG-GATAAAGAAT-----CGGCGCTTGGCATTC--AAT--G-TCGATGCAACG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----AC
gi|13 : tggcCC-----ACG-------A--GTGTGA--CAGAAT-----CAGCGCT-GACATTC--A-T--GACCATTGCATTA---TT-ACG------TAAAATC-TTTA---G-ACT--GT--AACGGATGAAGAG--CACG-----ATTACT-GTATATTTC----ATTGTTTGCCACTGAA-TGTTCCCTGGT
gi|14 : a---------T-AA----TACA--A--G---AA-TGGATTTGA-AACC----TT------------------TGTT-CCC-----ACG-------A--GTG-GA--AAGAAT-----CGGCGCT-GGCATTCAAAAG--G-GCGTTGCATTG---TGAACG------TCAAATG-TTTT---GAACT--GT--AAC
gi|15 : TCAAAATGT-A-CCATTTGAGGGTTCTT-TTTTTT----------AATGAAGGT-------GCTTGTGTTTTAATTTTCA--------------TTTTGTAGGTGTT-GTC-------TTTTAA---TATAA-A-------T-ATACCTACAATT-T--AAgccga
gi|16 : GT-AA-TTAACTTAATT-ACT--ATAATTGGAATAC-AG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTCA-TATATTTTTG--AAAAC-ACCC-TTTAATGAAT---ACACGGGTG
gi|17 : TTGCA--GATGCATT-------GCAGCAATGATAGATTAATCCG----AAC-------GAGCTAGGTCCA-AAAGA-TATTAAAA-----CCATTTGGGGGGGGAGG------GGGGGGGGC-ATTTTTTAA
gi|18 : TGATTAAGAATT-CA--GT-CCGATATAAA-GTTTTGAAAGAA-AATTTAT-----AAATTGGACCTTCTTTT-----AATC-GCACGCGCTC-TCAATTACAA
gi|19 : TGTTTCTG--AAAAC-ACTG-TT-AATGAATTATATACAGGTGATACGCGTGAT---TT-AATGAATTTC--AAAA-AGTTAA
gi|2 : tacCGATTCATTCCAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACC-TGGATTGAAATTGCTTTGCATTGATGCATTCAAGATTGCA-TAATAATAGAC--ATTTGGTAAAACATATTCAGAACAAGGTC---GAAGA-TATT--AA-------------------AGG------GGGGGGGGC-ATATTTCAA-TCGTATTCAG-AACGAAAGTATGAAGCTAGGTGGAATA-AGATATTT-GATTAAAAATC-CAC-GT-CCGATATAAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGGACCTTCTTTT-----AATC-ACATGTG-TC-TCAATTACAAATTCCCAGGCGTT-ACATTTATTT-ATTTTTC---AAAAACAATTTCAAAA-GT-A-CCATAT-A---------TTTTTT----------A------GT-------GCTTACTTTGAAATTTTCA--------------TCTTTTAA----TTGTCA-AC--ATGAAAC---TATAA-A-------T-ACACATATAATT-T--A-CACA-GTATGGT-AAT---AAC-GATTA-AAACGTTGCT-AATACATT-GT-A-AATGT-AA-TTA-CTTAATT-TCT--ATAATTGGAATAA-GG--TA-GC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA--ATATTTCTG--AAAAC-ATCC-TTTAATGAAT---ACATGGGTGATAC-CGTGGT---TT-ATTGAATTTCCGAAAA-AGTTAAT--ATT------T-AAGAATA-GA---TA----GC---CTG--AT-CAGAAACTGCAGTT--T---------TGTACTGCAAAAT------GATCAG-CTAG-A-CAGATTGAAATTGAATTTTAAAAAATG-----CCCCC-CCC-----------------CC-------CGGTT--TAATATCT---------T-AA----TACA--A--A---AAGTGGATATCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCC-----ACA-------G--ATG-GA--AAGAAT-----CAGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACA-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCATGGTAT
gi|3 : AATGAATTTCA-ATCCACGGTTC-GT--GC-TGAG-AGAATGTT-CCC-----ACG-------A--GTG-TA--AATAAT-----CTGCGCT-GGCATTC--AAT--G-TCGGTGCATTG----G-ACG------TCAAATG-TTTTTTGA-ACT--GT--AACATATGAAGA---TACG-----ACCACT-GTATATTTCGGGAAT--TTTGTTACTCTATTGTTCCGTG
gi|3 : acgGATTATTTACAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACCGTGGATTGAAATT--------------CATTCAAGATTGCA-TAATAATAAAC--ATTTGGTCAAACATATTCAGAACAGGGTCCGAAAAGACTATT--AATTAATC------------GGGG------GTCGGGGGCAATATTCCAATTCGTATCAAT-CACGAAAGTATGA-GCTAGGTG-AATATAGTAATTTTGA-TAAAAATC-CACAGTCCCGATATAAA-GTTTTAAAAGAATGTTTTAT-----AAATTGGACATTCTTTT-----AATCAACACGCACTCTTCAATTATAAATT-CCAGGCGTT-AC-TT-ATTT-AATTTTCCAAAAAA-CAATTTTCAAATGT-ATCCATATGA---------TGTTTT----------A------GT-------GCTTACGTTGAAATTTTCA--------------TCTTTTAA----T-GTCAAGCATATGA-AC---T-T-ATA-------TGACACATATAATTGTTAAACGCAGGTATGGTTATT---AAC-GATTATAAACG-TGCT-AATGCTTT-GTAA-AATGT-AATTTAACTTAATT-ACT--ATAATTGTAATAA--G--TATGC-----A-T--GA--GAAA-TAATCGCA--------------ATTTCTGA-AAAAC-ACCC-TTTAATGAAT---ACACGGGTGATAC-CGTGGTTGATT-ATCTGATTTC----AA-AGTTAAT--ATT------T--A-AATAGGA---TAGGG-GC---CTG--AT-CAAAAAT--CAGTTTGC---------TA-ACTG-----CAAAATGGATCAGCCTAA-ACCGGATTGAAATTGAA-TTTAAA-----------CCCC-CCC-----------------CC-------TGGTTTGTAATATCT---------T-AA----TAcaagattgcataataataaacatttggtcaaacatattcagaacagggtccgaaaagactattaattaatcgggggtcgggggcaatattccaattcgtatcaatcacgaaagtatgagctaggtgaatatagtaattttgataaaaatccacagtcccgatataaagttttaaaagaatgttttataaattggacattcttttaatcaacacgcactcttcaattataaattccaggcgttacttatttaattttccaaaaaacaattttcaaatgtatccatatgatgttttagtgcttacgttgaaattttcatcttttaatgtcaagcatatgaacttatatgacacatataattgttaaacgcaggtatggttattaacgattataaacgtgctaatgctttgtaaaatgtaatttaacttaattactataattgtaataagtatgcatgagaaataatcgcaatttctgaaaaacaccctttaatgaatacacgggtgataccgtggttgattatctgatttcaaagttaatatttaaataggataggggcctgatcaaaaatcagtttgctaactgcaaaatggatcagcctaaaccggattgaaattgaatttaaaccccccccctggtttgtaatatcttaata
gi|4 : acgcacggaacaatagagtaacaaaattcccgaaatatacagtggtcgtatcttcatatgttacagttcaaaaaacatttgacgtccaatgcaccgacattgaatgccagcgca-AAACGTTGCTTAGTACATTCGT-ACAATGTTAA-TTAACTTAATT-ACTCAATAATTG-AATAACGG--TCTGC-----A-TCTGACAGAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCCCTTTAATGA---------------TAC-CG-GGT---------------C--AAAACAGTTTAA--ATT------T-AA-AATA-AA---TACTGCGC---CTG--AT-CAGAAACTGCACATTCTC--------TGTACTT-----T------GATCAG-CGAGGA-CGGATTGAAAT--ATTTTTAAAAAATATGTTCCCCCCACCCTGTTTAATATTTTTGGACCTCGTTTGCGGAT--TAA-ATCTGGCCACATCC-AA----TATC--A--A---AGATGA---CCA-A-CCA-GGTTC-GTTTGCCTGAG-AAAATGTT-CC------ACG-------GTGACG-GA--AAGAAT-----CG---------ATTC--AAG--G-TTGGTGCATTG---TG-ACG------TCGAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACGAATAAACCGCTGGTATATTTC--GAAT--TT--TTACTCTA-
gi|5 : TTAAAAATT-CACAGT-CCGGTATGAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGAACATTCTTTT-----AATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTT-ATATT-ATTT-ATTTTT----AAAA-CAATTTCAAAATGT-A-CCATTTGA---------TTTTTTTGTTAATGAAA------GT-------GCTTGCGTTGAAATTTTCATTTAGTTGGTGTTTTCTTTTCA----T-GTTAGAC--ATG-CACTGATACAATA-------T-ACACATACAATT-T--AACGCA-GTATGGTTATT---AAC-TATTA-AAACGTTGGT-AGTACATT-GT-A-AATGC-AA-TTAACTTAATT-ACT--CTAATTGGAATAA-GGTATATGC-----A-T--GA--GAAA-T-TTctgat
gi|6 : GTTGGTGTTTT----------------TCTTTTAAA---T-GTCAGACC-ATGATAC---AATAATAACAATAAT-ACACATATAATT-T--AATGCA-GTATGGTTAATTCAAACTGATTA-AAACGTTGAT-AGTA-A-T-GT-A-AATGC-AA--TAACTTAATT-ATT--AT-ATTGG-ATAA-GG--TATATGTTAAA-T--GA--GAGA-T-TT-GTAAATCAAGTTA--ATATTTCTGAAAAAACAACCC-TTTAATGAAT---TTA-AGGTGATA--CGTGAT---TTAATTGAATTTC--AAAA-AGT--AT--------------A-ACTA-GA---TACT--GCG--TTG--ATGCAGAAtatatttc
gi|7 : ttgaaatttttatataATCT---------TGAA----T-CA--ATGC---AAGTCAATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AGAATGTTTCCC-----ACGA------G--GTG-GA--AAGAA------CGGCGC--GGTATTCC-AAT--G-TCAGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGATTATATG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGT
gi|7 : gTTCTTTCCACCT-------CGT----GGGAAACATTCTCTCAGCACGAACC-TGGATTGAAATTGACTTGCATTG----ATTCAAGATTGC---AATAATAGAC--ATTTGGTAAAACAtgcaataatagacatttggtaaaaca
gi|8 : gaccacggaacatagagtaacaaaattcgaaatatacagcggtcatataatctccatctgttacagtcaaaacatttgacgtcacaatgcactgacattggaataccgcgccgAAAAATGGCACAGT-CCGATATAAAAGTT------GGA-GTTTTCTTCTTTAA--TGGACATTTTTTT-----CATG-GCGCGACCTT-TCATTTTGAAAATCTC--GTGTTTACATC-ATTCGATTC-------AAA-CAATT-AAAAATGTTG-CCAT-TGAGTTGTTTTTTTTTTT----------A------ATTGAAAGGGCTTGCGTTGAAATTTTCA--------------T
gi|9 : ttta-AAACGTTGCT-AGTACATT-GT-A-AATGT-AA-TTAACTTAATT-ACT--ATAATTGGAATAA-GG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCC-TTTAATGAAT-----ACGGG--------------------------TTC--AAAA-AGTTAAT--ATT------TAAA-AATA-GA---TACT
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 333333333 2222 1 1 11 111 1 11 888888888888888888 22222 1 2 1 1 1 1 11111 11111 1111 555555555 44444444444444444444444444 33333333333333 2222 11 11 22222222222222222 1111111 11111 11 11 11111 11 1111111111 1 222222222 111 333333333 11 1 6666666666666666666666666666666 1 111 2222222 1 11111111111111111111111111 11 22222222222 1111 111111 11 222222222222222222 11111 111111 111 11111
lowQualScore : 0 333333333 1111 0 0 555 77777 5 88 11 0 0 2 222 0 33 555555555555555555 55555 0 0 3 3 3 3 3 0 6 3 6 6 6 66666 66666 6 6 0 8 0 8 8 6 0 9999 8 666 7 000000000 77777777777777777777777777 33333333333333 0000 6 5 55 11 66666666666666666 6 6 99 8 0 5555555 8 5 1 5 5 555 5 5 5 66 3 5 66 22222 5 66 66 5 5 44 11 5 5 66666 3 0 22 1 5555555555 77 1 33 99 666666666 6 6 111 222222222 11 8 33 0 1111111111111111111111111111111 0 111 55 3 3 3 5555555 0 66666666666666666666666666 88 3 77777777777 2222 0 77 444444 33 4 4 4 66 4 4 4 000000000000000000 4 55 00000 4 99 55 4 777 4 111111 4 111 4 55 55 66 22222 5 77 77 0 5
lowQualScore : . ......... .... . . ... ..... . .. .. . . . ... . .. .................. ..... . . . . . . . . . . . . . ..... ..... . . . . . . . . . .... . ... . ......... .......................... .............. .... . . .. .. ................. . . .. . . ....... . . . . . ... . . . .. . . .. ..... . .. .. . . .. .. . . ..... . . .. . .......... .. . .. .. ......... . . ... ......... .. . .. . ............................... . ... .. . . . ....... . .......................... .. . ........... .... . .. ...... .. . . . .. . . . .................. . .. ..... . .. .. . ... . ...... . ... . .. .. .. ..... . .. .. . .
lowQualScore : 2 555555555 2222 0 0 888 44444 6 88 00 6 8 5 888 0 88 000000000000000000 00000 0 0 3 3 3 3 2 8 7 2 7 7 7 77777 77777 7 7 8 0 8 0 0 0 8 0000 0 888 8 888888888 33333333333333333333333333 66666666666666 8888 7 2 88 00 00000000000000000 7 7 22 0 8 0000000 0 7 4 7 7 999 0 0 0 99 2 0 99 55555 0 99 99 0 0 11 99 7 7 99999 0 1 11 4 1111111111 99 4 00 22 555555555 7 7 777 777777777 00 0 55 0 5555555555555555555555555555555 0 000 88 2 2 2 5555555 0 77777777777777777777777777 33 2 44444444444 1111 1 99 444444 66 4 4 4 11 4 4 4 777777777777777777 0 55 00000 0 55 55 0 000 0 555555 0 000 0 55 55 11 55555 7 99 99 7 7
consensus : CGATTCTTTCCAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACC-TGGATTGAAATTGACTTGCATTGATGCATTCAAGATTGCA-TAATAATAGAC--ATTTGGTAAAACATATTCAGAACAAGGTCCG-AAAGA-TATT--AA-----C------------GGGGGGGGGGGG-----C-ATATTTCAA-TCGTATTCAGAA-CGAAAGTATGA-GCTAGGTG-AATA-AGATATTTTGATTAAAAATC-CACAGT-CCGATATAAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGGACATTCTTTT-----AATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTT-ACATT-ATTT-ATTTTTC---AAAA-CAATTTCAAAATGT-A-CCATATGA---------TTTTTT----------A------GT-------GCTTGCGTTGAAATTTTCA--------------TCTTTTAA----T-GTCAGAC--ATGANAC---TATAATA-------T-ACACATATAATT-T--AACGCA-GTATGGTTANT---AAC-GATTA-AAACGTTGCT-AGTACATT-GT-A-AATGT-AA-TTAACTTAATT-ACT--ATAATTGGAATAA-GG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCC-TTTAATGAAT---ACACGGGTGATAC-CGTGGT---TT-ATTGAATTTC--AAAA-AGTTAAT--ATT------T-AA-AATA-GA---TACTG-GCG--CTG--AT-CAGAAACTGCA-GTTTTC---------TGTACTG-----T------GATCAG-CTAG-A-CGGATTGAAATTGAATTTTAAAAAATG-----CCCCC-CCC-----------------CC-------CGGTT--TAATATCT---------T-AA----TACA--A--A---AAGTGGATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCC-----ACG-------G--GTG-GA--AAGAAT-----CGGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGTAT
Reference ( family-2908 ) : CGATTCTTTCCAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACC-TGGATTGAAATTGACTTGCATTGATGCATTCAAGATTGCA-TAATAATAGAC--ATTTGGTAAAACATATTCAGAACAAGGTCCG-AAAGA-TATT--AA-----C------------GGGGGGGGGGGG-----C-ATATTTCAA-TCGTATTCAGAA-CGAAAGTATGA-GCTAGGTG-AATA-AGATATTTTGATTAAAAATC-CACAGT-CCGATATAAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGGACATTCTTTT-----AATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTT-ACATT-ATTT-ATTTTTC---AAAA-CAATTTCAAAATGT-A-CCATATGA---------TTTTTT----------A------GT-------GCTTGCGTTGAAATTTTCA--------------TCTTTTAA----T-GTCAGAC--ATGANAC---TATAATA-------T-ACACATATAATT-T--AACGCA-GTATGGTTANT---AAC-GATTA-AAACGTTGCT-AGTACATT-GT-A-AATGT-AA-TTAACTTAATT-ACT--ATAATTGGAATAA-GG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCC-TTTAATGAAT---ACACGGGTGATAC-CGTGGT---TT-ATTGAATTTC--AAAA-AGTTAAT--ATT------T-AA-AATA-GA---TACTG-GCG--CTG--AT-CAGAAACTGCA-GTTTNT---------TGTACTG-----T------GATCAG-CTAG-A-CGGATTGAAATTGAATTTTAAAAAATG-----CCCCC-CCC-----------------CC-------CGGTT--TAATATCT---------T-AA----TACA--A--A---AAGTGGATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCC-----ACG-------G--GTG-GA--AAGAAT-----CGGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGTAT
gi|1 : ATCT---------TGAA----TGCATCA--ATGCAAGTCAATTTCA-ATTCA-GGTTC-GT--GC-TGAG-AAAATGTT-ACCTCTA-ACGATGAAGTA--GTG-AA--AAGGACATACACAGCGCT-GGCATTC--AATTGG-TCGTGGCATTGAGTCG-ACGCGGGATCCAAATG-TTTTG--G-ACTTGGTAGAGCAGATACAGGT--TA
gi|1 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatacTCCTTTTCAC-TACTTCATCGTTAGAGGTAA-CATTTTCTCAGCACGAACC-TGAATTGAAATTGACTTGCATTGATGCATTCAAGAT-GCA-TAATAATAGAA--ATTTGGTAAAACATATTCAGAATAAG-TCCG-AAAGA-TATT--AA-----A------------GGGGGGGGGGGGGGGGGC-ATATTTCAAATCGTATTCAGAAACGAAAGTATGA-GCTAGGTG-AATA-AGATATTTTGATTAAAAATC-CACAGT-CCGATATAAA-ATTTTAAAAGAA-ATTTTTT-----AAATTGGACATTCTTTTATTAAAATC-ACACGCGCTC-TCAATTACAAATTCCCAGACGTT-ACATT-ATTT-A-TTTTC---AAAA-CAATTTCAAAATGT-A-CCATATGA---------TTTTTT----------A------AT-------GCTTGCATTGAAATTTTCA--------------TCTTTTAA----T-GTCAGAC--ATGAAAC---T---ATA-------T-ACACATATAATT-T--AATGCA-GTA---------------------------TGCT-AATACATT-GT-C-AATGT-AA-TTAAC-TAATTAACT--AT-ATTGGAATAA-GG--TATGC-----ACT--GA--GAAATT-TTTGCAAATCAAAGTATTATATTTCTG--GAgcataataatagaaatttggtaaaacatattcagaataagtccgaaagatattaaagggggggggggggggggcatatttcaaatcgtattcagaaacgaaagtatgagctaggtgaataagatattttgattaaaaatccacagtccgatataaaattttaaaagaaattttttaaattggacattcttttattaaaatcacacgcgctctcaattacaaattcccagacgttacattatttattttcaaaacaatttcaaaatgtaccatatgattttttaatgcttgcattgaaattttcatcttttaatgtcagacatgaaactatatacacatataatttaatgcagtatgctaatacattgtcaatgtaattaactaattaactatattggaataaggtatgcactgagaaatttttgcaaatcaaagtattatatttctggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttaaaaagtggatcaatccaggttcgtgctgagataatgttcccttcccatgagtggaaagaatcggcgctggcattcaatatcggtgcattgtgacgtcaaatgtttttgactgtaacaaatgagattgcgactgctgtatatttcgaattttttactctatgttctgtggtat
gi|1 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatactaacctgtatctgctctaccaagtccaaaacatttggatcccgcgtcgactcaatgccacgaccaattgaatgccagcgctgtgtatgA--A--A---AAGTGGAT--CA-ATCCA-GGTTC-GT--GC-TGAG-ATAATGTT-CCCTTCCCATG-------A--GTG-GA--AAGAAT-----CGGCGCT-GGCATTC--AAT--A-TCGGTGCATTG---TG-ACG------TCAAATGTTTTT---G-ACT--GT--AACAAAT-GAGAT--TGCG-----ACTGCT-GTATATTTC--GAAT--TTT-TTACTCTA-TGTTCTGTGGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttaaaaagtggatcaatccaggttcgtgctgagataatgttcccttcccatgagtggaaagaatcggcgctggcattcaatatcggtgcattgtgacgtcaaatgtttttgactgtaacaaatgagattgcgactgctgtatatttcgaattttttactctatgttctgtggtat
gi|10 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatactaacctgtatctgctctaccaagtccaaaacatttggatcccgcgtcgactcaatgccacgaccaattgaatgccagcgctgtgtatgtccttttcactacttcatcgttagaggtaacattttctcagcacgaacctgaattgaaattgacttgcattgatgcattcaagatgcataataatagaaatttggtaaaacatattcagaataagtccgaaagatattaaagggggggggggggggggcatatttcaaatcgtattcagaaacgaaagtatgagctaggtgaataagatattttgattaaaaatccacagtccgatataaaattttaaaagaaattttttaaattggacattcttttattaaaatcacacgcgctctcaattacaaattcccagacgttacattatttattttcaaaacaatttcaaaatgtaccatatgattttttaatgcttgcattgaaattttcatcttttaatgtcagacatgaaactatatacacatataatttaatgcagtatgctaatacattgtcaatgtaattaactaattaactatattggaataaggtatgcactgagaaatttttgcaaatcaaagtattatatttctggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttTAATACGCATGGT---TT-ATTGAATTTA--AAAACAG---ATCCATTTGCGCCT-GA-AGTG-GAATCTACGA-GCGGATTGAAAT-CAGAAACTACA-GTTTTTGTGTGGGCATGTTCTG-----T------GATCAG-CTAA-A-CGGATTGAAATTTAATTTT-AAAAATG-----TCTCC-C
gi|11 : AGTGGAT--CA-ATCCA-GGTTC-GC--GC-AGAG-AAAATGTT-CCC-----ACG-------G--TTG-GA--AAGAAT-----CGGCACT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGtaggttttaatct
gi|12 : TAGCT---------T-AAAGTGTACA--A--A---AAGTGGAT--CACATCCA-GGTTCCGT--GC-TGAGGAAAATGTC-CCC-----A---------G--TTG-GATAAAGAAT-----CGGCGCTTGGCATTC--AAT--G-TCGATGCAACG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----AC
gi|13 : tggcCC-----ACG-------A--GTGTGA--CAGAAT-----CAGCGCT-GACATTC--A-T--GACCATTGCATTA---TT-ACG------TAAAATC-TTTA---G-ACT--GT--AACGGATGAAGAG--CACG-----ATTACT-GTATATTTC----ATTGTTTGCCACTGAA-TGTTCCCTGGT
gi|14 : a---------T-AA----TACA--A--G---AA-TGGATTTGA-AACC----TT------------------TGTT-CCC-----ACG-------A--GTG-GA--AAGAAT-----CGGCGCT-GGCATTCAAAAG--G-GCGTTGCATTG---TGAACG------TCAAATG-TTTT---GAACT--GT--AAC
gi|15 : TCAAAATGT-A-CCATTTGAGGGTTCTT-TTTTTT----------AATGAAGGT-------GCTTGTGTTTTAATTTTCA--------------TTTTGTAGGTGTT-GTC-------TTTTAA---TATAA-A-------T-ATACCTACAATT-T--AAgccga
gi|16 : GT-AA-TTAACTTAATT-ACT--ATAATTGGAATAC-AG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTCA-TATATTTTTG--AAAAC-ACCC-TTTAATGAAT---ACACGGGTG
gi|17 : TTGCA--GATGCATT-------GCAGCAATGATAGATTAATCCG----AAC-------GAGCTAGGTCCA-AAAGA-TATTAAAA-----CCATTTGGGGGGGGAGGGGGGGGGG-----C-ATTTTTTAA-
gi|18 : TGATTAAGAATT-CA--GT-CCGATATAAA-GTTTTGAAAGAA-AATTTAT-----AAATTGGACCTTCTTTT-----AATC-GCACGCGCTC-TCAATTACAA
gi|19 : TGTTTCTG--AAAAC-ACTG-TT-AATGAATTATATACAGGTGATACGCGTGAT---TT-AATGAATTTC--AAAA-AGTTAA
gi|2 : tacCGATTCATTCCAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACC-TGGATTGAAATTGCTTTGCATTGATGCATTCAAGATTGCA-TAATAATAGAC--ATTTGGTAAAACATATTCAGAACAAGGTC---GAAGA-TATT--AA-------------------AGGGGGGGGGG-----C-ATATTTCAA-TCGTATTCAGAA-CGAAAGTATGAAGCTAGGTGGAATA-AGATATTT-GATTAAAAATC-CAC-GT-CCGATATAAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGGACCTTCTTTT-----AATC-ACATGTG-TC-TCAATTACAAATTCCCAGGCGTT-ACATTTATTT-ATTTTTC---AAAAACAATTTCAAAA-GT-A-CCATAT-A---------TTTTTT----------A------GT-------GCTTACTTTGAAATTTTCA--------------TCTTTTAA----TTGTCA-AC--ATGAAAC---TATAA-A-------T-ACACATATAATT-T--A-CACA-GTATGGT-AAT---AAC-GATTA-AAACGTTGCT-AATACATT-GT-A-AATGT-AA-TTA-CTTAATT-TCT--ATAATTGGAATAA-GG--TA-GC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA--ATATTTCTG--AAAAC-ATCC-TTTAATGAAT---ACATGGGTGATAC-CGTGGT---TT-ATTGAATTTCCGAAAA-AGTTAAT--ATT------T-AAGAATA-GA---TA----GC---CTG--AT-CAGAAACTGCA-GTT--T---------TGTACTGCAAAAT------GATCAG-CTAG-A-CAGATTGAAATTGAATTTTAAAAAATG-----CCCCC-CCC-----------------CC-------CGGTT--TAATATCT---------T-AA----TACA--A--A---AAGTGGATATCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCC-----ACA-------G--ATG-GA--AAGAAT-----CAGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACA-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCATGGTAT
gi|3 : AATGAATTTCA-ATCCACGGTTC-GT--GC-TGAG-AGAATGTT-CCC-----ACG-------A--GTG-TA--AATAAT-----CTGCGCT-GGCATTC--AAT--G-TCGGTGCATTG----G-ACG------TCAAATG-TTTTTTGA-ACT--GT--AACATATGAAGA---TACG-----ACCACT-GTATATTTCGGGAAT--TTTGTTACTCTATTGTTCCGTG
gi|3 : acgGATTATTTACAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACCGTGGATTGAAATT--------------CATTCAAGATTGCA-TAATAATAAAC--ATTTGGTCAAACATATTCAGAACAGGGTCCGAAAAGACTATT--AATTAATC------------GGGGGTCGGGGG-----CAATATTCCAATTCGTATCAATCA-CGAAAGTATGA-GCTAGGTG-AATATAGTAATTTTGA-TAAAAATC-CACAGTCCCGATATAAA-GTTTTAAAAGAATGTTTTAT-----AAATTGGACATTCTTTT-----AATCAACACGCACTCTTCAATTATAAATT-CCAGGCGTT-AC-TT-ATTT-AATTTTCCAAAAAA-CAATTTTCAAATGT-ATCCATATGA---------TGTTTT----------A------GT-------GCTTACGTTGAAATTTTCA--------------TCTTTTAA----T-GTCAAGCATATGA-AC---T-T-ATA-------TGACACATATAATTGTTAAACGCAGGTATGGTTATT---AAC-GATTATAAACG-TGCT-AATGCTTT-GTAA-AATGT-AATTTAACTTAATT-ACT--ATAATTGTAATAA--G--TATGC-----A-T--GA--GAAA-TAATCGCA--------------ATTTCTGA-AAAAC-ACCC-TTTAATGAAT---ACACGGGTGATAC-CGTGGTTGATT-ATCTGATTTC----AA-AGTTAAT--ATT------T--A-AATAGGA---TAGGG-GC---CTG--AT-CAAAAAT--CA-GTTTGC---------TA-ACTG-----CAAAATGGATCAGCCTAA-ACCGGATTGAAATTGAA-TTTAAA-----------CCCC-CCC-----------------CC-------TGGTTTGTAATATCT---------T-AA----TAcaagattgcataataataaacatttggtcaaacatattcagaacagggtccgaaaagactattaattaatcgggggtcgggggcaatattccaattcgtatcaatcacgaaagtatgagctaggtgaatatagtaattttgataaaaatccacagtcccgatataaagttttaaaagaatgttttataaattggacattcttttaatcaacacgcactcttcaattataaattccaggcgttacttatttaattttccaaaaaacaattttcaaatgtatccatatgatgttttagtgcttacgttgaaattttcatcttttaatgtcaagcatatgaacttatatgacacatataattgttaaacgcaggtatggttattaacgattataaacgtgctaatgctttgtaaaatgtaatttaacttaattactataattgtaataagtatgcatgagaaataatcgcaatttctgaaaaacaccctttaatgaatacacgggtgataccgtggttgattatctgatttcaaagttaatatttaaataggataggggcctgatcaaaaatcagtttgctaactgcaaaatggatcagcctaaaccggattgaaattgaatttaaaccccccccctggtttgtaatatcttaata
gi|4 : acgcacggaacaatagagtaacaaaattcccgaaatatacagtggtcgtatcttcatatgttacagttcaaaaaacatttgacgtccaatgcaccgacattgaatgccagcgca-AAACGTTGCTTAGTACATTCGT-ACAATGTTAA-TTAACTTAATT-ACTCAATAATTG-AATAACGG--TCTGC-----A-TCTGACAGAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCCCTTTAATGA---------------TAC-CG-GGT---------------C--AAAACAGTTTAA--ATT------T-AA-AATA-AA---TACTGCGC---CTG--AT-CAGAAACTGCACATTCTC---------TGTACTT-----T------GATCAG-CGAGGA-CGGATTGAAAT--ATTTTTAAAAAATATGTTCCCCCCACCCTGTTTAATATTTTTGGACCTCGTTTGCGGAT--TAA-ATCTGGCCACATCC-AA----TATC--A--A---AGATGA---CCA-A-CCA-GGTTC-GTTTGCCTGAG-AAAATGTT-CC------ACG-------GTGACG-GA--AAGAAT-----CG---------ATTC--AAG--G-TTGGTGCATTG---TG-ACG------TCGAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACGAATAAACCGCTGGTATATTTC--GAAT--TT--TTACTCTA-
gi|5 : TTAAAAATT-CACAGT-CCGGTATGAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGAACATTCTTTT-----AATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTT-ATATT-ATTT-ATTTTT----AAAA-CAATTTCAAAATGT-A-CCATTTGA---------TTTTTTTGTTAATGAAA------GT-------GCTTGCGTTGAAATTTTCATTTAGTTGGTGTTTTCTTTTCA----T-GTTAGAC--ATG-CACTGATACAATA-------T-ACACATACAATT-T--AACGCA-GTATGGTTATT---AAC-TATTA-AAACGTTGGT-AGTACATT-GT-A-AATGC-AA-TTAACTTAATT-ACT--CTAATTGGAATAA-GGTATATGC-----A-T--GA--GAAA-T-TTctgat
gi|6 : GTTGGTGTTTT----------------TCTTTTAAA---T-GTCAGACC-ATGATAC---AATAATAACAATAAT-ACACATATAATT-T--AATGCA-GTATGGTTAATTCAAACTGATTA-AAACGTTGAT-AGTA-A-T-GT-A-AATGC-AA--TAACTTAATT-ATT--AT-ATTGG-ATAA-GG--TATATGTTAAA-T--GA--GAGA-T-TT-GTAAATCAAGTTA--ATATTTCTGAAAAAACAACCC-TTTAATGAAT---TTA-AGGTGATA--CGTGAT---TTAATTGAATTTC--AAAA-AGT--AT--------------A-ACTA-GA---TACT--GCG--TTG--ATGCAGAAtatatttc
gi|7 : ttgaaatttttatataATCT---------TGAA----T-CA--ATGC---AAGTCAATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AGAATGTTTCCC-----ACGA------G--GTG-GA--AAGAA------CGGCGC--GGTATTCC-AAT--G-TCAGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGATTATATG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGT
gi|7 : gTTCTTTCCACCT-------CGT----GGGAAACATTCTCTCAGCACGAACC-TGGATTGAAATTGACTTGCATTG----ATTCAAGATTGC---AATAATAGAC--ATTTGGTAAAACAtgcaataatagacatttggtaaaaca
gi|8 : gaccacggaacatagagtaacaaaattcgaaatatacagcggtcatataatctccatctgttacagtcaaaacatttgacgtcacaatgcactgacattggaataccgcgccgAAAAATGGCACAGT-CCGATATAAAAGTT------GGA-GTTTTCTTCTTTAA--TGGACATTTTTTT-----CATG-GCGCGACCTT-TCATTTTGAAAATCTC--GTGTTTACATC-ATTCGATTC-------AAA-CAATT-AAAAATGTTG-CCAT-TGAGTTGTTTTTTTTTTT----------A------ATTGAAAGGGCTTGCGTTGAAATTTTCA--------------T
gi|9 : ttta-AAACGTTGCT-AGTACATT-GT-A-AATGT-AA-TTAACTTAATT-ACT--ATAATTGGAATAA-GG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCC-TTTAATGAAT-----ACGGG--------------------------TTC--AAAA-AGTTAAT--ATT------TAAA-AATA-GA---TACT
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 333333333 2222 1 1 11 111 1 11 888888888888888888 22222 1 2 1 1 1 1 11111 11111 1111 555555555 44444444444444444444444444 33333333333333 2222 11 11 22222222222222222 1111111 11111 11 11 11111 11 1111111111 1 222222222 111 333333333 11 1 666666666666666666666666666666 1 111 2222222 1 11111111111111111111111111 11 22222222222 1111 111111 11 222222222222222222 11111 111111 111 11111
lowQualScore : 0 333333333 1111 0 0 555 77777 5 88 11 0 0 2 222 0 33 555555555555555555 55555 0 0 3 3 3 3 3 0 6 3 6 6 6 66666 66666 6 6 0 8 0 8 8 6 0 9999 8 666 7 000000000 77777777777777777777777777 33333333333333 0000 6 5 55 11 66666666666666666 6 6 99 8 0 5555555 8 5 1 5 5 555 5 5 5 66 3 5 66 22222 5 66 66 5 5 44 11 5 5 66666 3 0 22 1 5555555555 77 1 33 99 666666666 6 6 111 222222222 11 8 33 0 111111111111111111111111111111 0 111 55 3 3 3 5555555 0 66666666666666666666666666 88 3 77777777777 2222 0 77 444444 33 4 4 4 66 4 4 4 000000000000000000 4 55 00000 4 99 55 4 777 4 111111 4 111 4 55 55 66 22222 5 77 77 0 5
lowQualScore : . ......... .... . . ... ..... . .. .. . . . ... . .. .................. ..... . . . . . . . . . . . . . ..... ..... . . . . . . . . . .... . ... . ......... .......................... .............. .... . . .. .. ................. . . .. . . ....... . . . . . ... . . . .. . . .. ..... . .. .. . . .. .. . . ..... . . .. . .......... .. . .. .. ......... . . ... ......... .. . .. . .............................. . ... .. . . . ....... . .......................... .. . ........... .... . .. ...... .. . . . .. . . . .................. . .. ..... . .. .. . ... . ...... . ... . .. .. .. ..... . .. .. . .
lowQualScore : 2 555555555 2222 0 0 888 44444 6 88 00 6 8 5 888 0 88 000000000000000000 00000 0 0 3 3 3 3 2 8 7 2 7 7 7 77777 77777 7 7 8 0 8 0 0 0 8 0000 0 888 8 888888888 33333333333333333333333333 66666666666666 8888 7 2 88 00 00000000000000000 7 7 22 0 8 0000000 0 7 4 7 7 999 0 0 0 99 2 0 99 55555 0 99 99 0 0 11 99 7 7 99999 0 1 11 4 1111111111 99 4 00 22 555555555 7 7 777 777777777 00 0 55 0 000000000000000000000000000000 0 000 88 2 2 2 5555555 0 77777777777777777777777777 33 2 44444444444 1111 1 99 444444 66 4 4 4 11 4 4 4 777777777777777777 0 55 00000 0 55 55 0 000 0 555555 0 000 0 55 55 11 55555 7 99 99 7 7
consensus : CGATTCTTTCCAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACC-TGGATTGAAATTGACTTGCATTGATGCATTCAAGATTGCA-TAATAATAGAC--ATTTGGTAAAACATATTCAGAACAAGGTCCG-AAAGA-TATT--AA-----C------------GGGGGGGGGGGG-----C-ATATTTCAA-TCGTATTCAGAA-CGAAAGTATGA-GCTAGGTG-AATA-AGATATTTTGATTAAAAATC-CACAGT-CCGATATAAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGGACATTCTTTT-----AATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTT-ACATT-ATTT-ATTTTTC---AAAA-CAATTTCAAAATGT-A-CCATATGA---------TTTTTT----------A------GT-------GCTTGCGTTGAAATTTTCA--------------TCTTTTAA----T-GTCAGAC--ATGANAC---TATAATA-------T-ACACATATAATT-T--AACGCA-GTATGGTTANT---AAC-GATTA-AAACGTTGCT-AGTACATT-GT-A-AATGT-AA-TTAACTTAATT-ACT--ATAATTGGAATAA-GG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCC-TTTAATGAAT---ACACGGGTGATAC-CGTGGT---TT-ATTGAATTTC--AAAA-AGTTAAT--ATT------T-AA-AATA-GA---TACTG-GCG--CTG--AT-CAGAAACTGCA-GTTTTC---------TGTACTG-----T------GATCAG-CTAG-A-CGGATTGAAATTGAATTTTAAAAAATG-----CCCCC-CCC-----------------CC-------CGGTT--TAATATCT---------T-AA----TACA--A--A---AAGTGGATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCC-----ACG-------G--GTG-GA--AAGAAT-----CGGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGTAT
Reference ( family-2908 ) : CGATTCTTTCCAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACC-TGGATTGAAATTGACTTGCATTGATGCATTCAAGATTGCA-TAATAATAGAC--ATTTGGTAAAACATATTCAGAACAAGGTCCG-AAAGA-TATT--AA-----C------------GGGGGGGGGGGG-----C-ATATTTCAA-TCGTATTCAGAA-CGAAAGTATGA-GCTAGGTG-AATA-AGATATTTTGATTAAAAATC-CACAGT-CCGATATAAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGGACATTCTTTT-----AATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTT-ACATT-ATTT-ATTTTTC---AAAA-CAATTTCAAAATGT-A-CCATATGA---------TTTTTT----------A------GT-------GCTTGCGTTGAAATTTTCA--------------TCTTTTAA----T-GTCAGAC--ATGANAC---TATAATA-------T-ACACATATAATT-T--AACGCA-GTATGGTTANT---AAC-GATTA-AAACGTTGCT-AGTACATT-GT-A-AATGT-AA-TTAACTTAATT-ACT--ATAATTGGAATAA-GG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCC-TTTAATGAAT---ACACGGGTGATAC-CGTGGT---TT-ATTGAATTTC--AAAA-AGTTAAT--ATT------T-AA-AATA-GA---TACTG-GCG--CTG--AT-CAGAAACTGCA-GTTTTC---------TGTACTG-----T------GATCAG-CTAG-A-CGGATTGAAATTGAATTTTAAAAAATG-----CCCCC-CCC-----------------CC-------CGGTT--TAATATCT---------T-AA----TACA--A--A---AAGTGGATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCC-----ACG-------G--GTG-GA--AAGAAT-----CGGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGTAT
gi|1 : ATCT---------TGAA----TGCATCA--ATGCAAGTCAATTTCA-ATTCA-GGTTC-GT--GC-TGAG-AAAATGTT-ACCTCTA-ACGATGAAGTA--GTG-AA--AAGGACATACACAGCGCT-GGCATTC--AATTGG-TCGTGGCATTGAGTCG-ACGCGGGATCCAAATG-TTTTG--G-ACTTGGTAGAGCAGATACAGGT--TA
gi|1 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatacTCCTTTTCAC-TACTTCATCGTTAGAGGTAA-CATTTTCTCAGCACGAACC-TGAATTGAAATTGACTTGCATTGATGCATTCAAGAT-GCA-TAATAATAGAA--ATTTGGTAAAACATATTCAGAATAAG-TCCG-AAAGA-TATT--AA-----A------------GGGGGGGGGGGGGGGGGC-ATATTTCAAATCGTATTCAGAAACGAAAGTATGA-GCTAGGTG-AATA-AGATATTTTGATTAAAAATC-CACAGT-CCGATATAAA-ATTTTAAAAGAA-ATTTTTT-----AAATTGGACATTCTTTTATTAAAATC-ACACGCGCTC-TCAATTACAAATTCCCAGACGTT-ACATT-ATTT-A-TTTTC---AAAA-CAATTTCAAAATGT-A-CCATATGA---------TTTTTT----------A------AT-------GCTTGCATTGAAATTTTCA--------------TCTTTTAA----T-GTCAGAC--ATGAAAC---T---ATA-------T-ACACATATAATT-T--AATGCA-GTA---------------------------TGCT-AATACATT-GT-C-AATGT-AA-TTAAC-TAATTAACT--AT-ATTGGAATAA-GG--TATGC-----ACT--GA--GAAATT-TTTGCAAATCAAAGTATTATATTTCTG--GAgcataataatagaaatttggtaaaacatattcagaataagtccgaaagatattaaagggggggggggggggggcatatttcaaatcgtattcagaaacgaaagtatgagctaggtgaataagatattttgattaaaaatccacagtccgatataaaattttaaaagaaattttttaaattggacattcttttattaaaatcacacgcgctctcaattacaaattcccagacgttacattatttattttcaaaacaatttcaaaatgtaccatatgattttttaatgcttgcattgaaattttcatcttttaatgtcagacatgaaactatatacacatataatttaatgcagtatgctaatacattgtcaatgtaattaactaattaactatattggaataaggtatgcactgagaaatttttgcaaatcaaagtattatatttctggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttaaaaagtggatcaatccaggttcgtgctgagataatgttcccttcccatgagtggaaagaatcggcgctggcattcaatatcggtgcattgtgacgtcaaatgtttttgactgtaacaaatgagattgcgactgctgtatatttcgaattttttactctatgttctgtggtat
gi|1 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatactaacctgtatctgctctaccaagtccaaaacatttggatcccgcgtcgactcaatgccacgaccaattgaatgccagcgctgtgtatgA--A--A---AAGTGGAT--CA-ATCCA-GGTTC-GT--GC-TGAG-ATAATGTT-CCCTTCCCATG-------A--GTG-GA--AAGAAT-----CGGCGCT-GGCATTC--AAT--A-TCGGTGCATTG---TG-ACG------TCAAATGTTTTT---G-ACT--GT--AACAAAT-GAGAT--TGCG-----ACTGCT-GTATATTTC--GAAT--TTT-TTACTCTA-TGTTCTGTGGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttaaaaagtggatcaatccaggttcgtgctgagataatgttcccttcccatgagtggaaagaatcggcgctggcattcaatatcggtgcattgtgacgtcaaatgtttttgactgtaacaaatgagattgcgactgctgtatatttcgaattttttactctatgttctgtggtat
gi|10 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatactaacctgtatctgctctaccaagtccaaaacatttggatcccgcgtcgactcaatgccacgaccaattgaatgccagcgctgtgtatgtccttttcactacttcatcgttagaggtaacattttctcagcacgaacctgaattgaaattgacttgcattgatgcattcaagatgcataataatagaaatttggtaaaacatattcagaataagtccgaaagatattaaagggggggggggggggggcatatttcaaatcgtattcagaaacgaaagtatgagctaggtgaataagatattttgattaaaaatccacagtccgatataaaattttaaaagaaattttttaaattggacattcttttattaaaatcacacgcgctctcaattacaaattcccagacgttacattatttattttcaaaacaatttcaaaatgtaccatatgattttttaatgcttgcattgaaattttcatcttttaatgtcagacatgaaactatatacacatataatttaatgcagtatgctaatacattgtcaatgtaattaactaattaactatattggaataaggtatgcactgagaaatttttgcaaatcaaagtattatatttctggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttTAATACGCATGGT---TT-ATTGAATTTA--AAAACAG---ATCCATTTGCGCCT-GA-AGTG-GAATCTACGA-GCGGATTGAAAT-CAGAAACTACA-GTTTTTGTGTGGGCATGTTCTG-----T------GATCAG-CTAA-A-CGGATTGAAATTTAATTTT-AAAAATG-----TCTCC-C
gi|11 : AGTGGAT--CA-ATCCA-GGTTC-GC--GC-AGAG-AAAATGTT-CCC-----ACG-------G--TTG-GA--AAGAAT-----CGGCACT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGtaggttttaatct
gi|12 : TAGCT---------T-AAAGTGTACA--A--A---AAGTGGAT--CACATCCA-GGTTCCGT--GC-TGAGGAAAATGTC-CCC-----A---------G--TTG-GATAAAGAAT-----CGGCGCTTGGCATTC--AAT--G-TCGATGCAACG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----AC
gi|13 : tggcCC-----ACG-------A--GTGTGA--CAGAAT-----CAGCGCT-GACATTC--A-T--GACCATTGCATTA---TT-ACG------TAAAATC-TTTA---G-ACT--GT--AACGGATGAAGAG--CACG-----ATTACT-GTATATTTC----ATTGTTTGCCACTGAA-TGTTCCCTGGT
gi|14 : a---------T-AA----TACA--A--G---AA-TGGATTTGA-AACC----TT------------------TGTT-CCC-----ACG-------A--GTG-GA--AAGAAT-----CGGCGCT-GGCATTCAAAAG--G-GCGTTGCATTG---TGAACG------TCAAATG-TTTT---GAACT--GT--AAC
gi|15 : TCAAAATGT-A-CCATTTGAGGGTTCTT-TTTTTT----------AATGAAGGT-------GCTTGTGTTTTAATTTTCA--------------TTTTGTAGGTGTT-GTC-------TTTTAA---TATAA-A-------T-ATACCTACAATT-T--AAgccga
gi|16 : GT-AA-TTAACTTAATT-ACT--ATAATTGGAATAC-AG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTCA-TATATTTTTG--AAAAC-ACCC-TTTAATGAAT---ACACGGGTG
gi|17 : TTGCA--GATGCATT-------GCAGCAATGATAGATTAATCCG----AAC-------GAGCTAGGTCCA-AAAGA-TATTAAAA-----CCATTTGGGGGGGGAGGGGGGGGGG-----C-ATTTTTTAA-
gi|18 : TGATTAAGAATT-CA--GT-CCGATATAAA-GTTTTGAAAGAA-AATTTAT-----AAATTGGACCTTCTTTT-----AATC-GCACGCGCTC-TCAATTACAA
gi|19 : TGTTTCTG--AAAAC-ACTG-TT-AATGAATTATATACAGGTGATACGCGTGAT---TT-AATGAATTTC--AAAA-AGTTAA
gi|2 : tacCGATTCATTCCAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACC-TGGATTGAAATTGCTTTGCATTGATGCATTCAAGATTGCA-TAATAATAGAC--ATTTGGTAAAACATATTCAGAACAAGGTC---GAAGA-TATT--AA-------------------AGGGGGGGGGG-----C-ATATTTCAA-TCGTATTCAGAA-CGAAAGTATGAAGCTAGGTGGAATA-AGATATTT-GATTAAAAATC-CAC-GT-CCGATATAAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGGACCTTCTTTT-----AATC-ACATGTG-TC-TCAATTACAAATTCCCAGGCGTT-ACATTTATTT-ATTTTTC---AAAAACAATTTCAAAA-GT-A-CCATAT-A---------TTTTTT----------A------GT-------GCTTACTTTGAAATTTTCA--------------TCTTTTAA----TTGTCA-AC--ATGAAAC---TATAA-A-------T-ACACATATAATT-T--A-CACA-GTATGGT-AAT---AAC-GATTA-AAACGTTGCT-AATACATT-GT-A-AATGT-AA-TTA-CTTAATT-TCT--ATAATTGGAATAA-GG--TA-GC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA--ATATTTCTG--AAAAC-ATCC-TTTAATGAAT---ACATGGGTGATAC-CGTGGT---TT-ATTGAATTTCCGAAAA-AGTTAAT--ATT------T-AAGAATA-GA---TA----GC---CTG--AT-CAGAAACTGCA-GTTT-----------TGTACTGCAAAAT------GATCAG-CTAG-A-CAGATTGAAATTGAATTTTAAAAAATG-----CCCCC-CCC-----------------CC-------CGGTT--TAATATCT---------T-AA----TACA--A--A---AAGTGGATATCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCC-----ACA-------G--ATG-GA--AAGAAT-----CAGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACA-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCATGGTAT
gi|3 : AATGAATTTCA-ATCCACGGTTC-GT--GC-TGAG-AGAATGTT-CCC-----ACG-------A--GTG-TA--AATAAT-----CTGCGCT-GGCATTC--AAT--G-TCGGTGCATTG----G-ACG------TCAAATG-TTTTTTGA-ACT--GT--AACATATGAAGA---TACG-----ACCACT-GTATATTTCGGGAAT--TTTGTTACTCTATTGTTCCGTG
gi|3 : acgGATTATTTACAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACCGTGGATTGAAATT--------------CATTCAAGATTGCA-TAATAATAAAC--ATTTGGTCAAACATATTCAGAACAGGGTCCGAAAAGACTATT--AATTAATC------------GGGGGTCGGGGG-----CAATATTCCAATTCGTATCAATCA-CGAAAGTATGA-GCTAGGTG-AATATAGTAATTTTGA-TAAAAATC-CACAGTCCCGATATAAA-GTTTTAAAAGAATGTTTTAT-----AAATTGGACATTCTTTT-----AATCAACACGCACTCTTCAATTATAAATT-CCAGGCGTT-AC-TT-ATTT-AATTTTCCAAAAAA-CAATTTTCAAATGT-ATCCATATGA---------TGTTTT----------A------GT-------GCTTACGTTGAAATTTTCA--------------TCTTTTAA----T-GTCAAGCATATGA-AC---T-T-ATA-------TGACACATATAATTGTTAAACGCAGGTATGGTTATT---AAC-GATTATAAACG-TGCT-AATGCTTT-GTAA-AATGT-AATTTAACTTAATT-ACT--ATAATTGTAATAA--G--TATGC-----A-T--GA--GAAA-TAATCGCA--------------ATTTCTGA-AAAAC-ACCC-TTTAATGAAT---ACACGGGTGATAC-CGTGGTTGATT-ATCTGATTTC----AA-AGTTAAT--ATT------T--A-AATAGGA---TAGGG-GC---CTG--AT-CAAAAAT--CA-GTTTGC---------TA-ACTG-----CAAAATGGATCAGCCTAA-ACCGGATTGAAATTGAA-TTTAAA-----------CCCC-CCC-----------------CC-------TGGTTTGTAATATCT---------T-AA----TAcaagattgcataataataaacatttggtcaaacatattcagaacagggtccgaaaagactattaattaatcgggggtcgggggcaatattccaattcgtatcaatcacgaaagtatgagctaggtgaatatagtaattttgataaaaatccacagtcccgatataaagttttaaaagaatgttttataaattggacattcttttaatcaacacgcactcttcaattataaattccaggcgttacttatttaattttccaaaaaacaattttcaaatgtatccatatgatgttttagtgcttacgttgaaattttcatcttttaatgtcaagcatatgaacttatatgacacatataattgttaaacgcaggtatggttattaacgattataaacgtgctaatgctttgtaaaatgtaatttaacttaattactataattgtaataagtatgcatgagaaataatcgcaatttctgaaaaacaccctttaatgaatacacgggtgataccgtggttgattatctgatttcaaagttaatatttaaataggataggggcctgatcaaaaatcagtttgctaactgcaaaatggatcagcctaaaccggattgaaattgaatttaaaccccccccctggtttgtaatatcttaata
gi|4 : acgcacggaacaatagagtaacaaaattcccgaaatatacagtggtcgtatcttcatatgttacagttcaaaaaacatttgacgtccaatgcaccgacattgaatgccagcgca-AAACGTTGCTTAGTACATTCGT-ACAATGTTAA-TTAACTTAATT-ACTCAATAATTG-AATAACGG--TCTGC-----A-TCTGACAGAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCCCTTTAATGA---------------TAC-CG-GGT---------------C--AAAACAGTTTAA--ATT------T-AA-AATA-AA---TACTGCGC---CTG--AT-CAGAAACTGCACATTCTC---------TGTACTT-----T------GATCAG-CGAGGA-CGGATTGAAAT--ATTTTTAAAAAATATGTTCCCCCCACCCTGTTTAATATTTTTGGACCTCGTTTGCGGAT--TAA-ATCTGGCCACATCC-AA----TATC--A--A---AGATGA---CCA-A-CCA-GGTTC-GTTTGCCTGAG-AAAATGTT-CC------ACG-------GTGACG-GA--AAGAAT-----CG---------ATTC--AAG--G-TTGGTGCATTG---TG-ACG------TCGAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACGAATAAACCGCTGGTATATTTC--GAAT--TT--TTACTCTA-
gi|5 : TTAAAAATT-CACAGT-CCGGTATGAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGAACATTCTTTT-----AATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTT-ATATT-ATTT-ATTTTT----AAAA-CAATTTCAAAATGT-A-CCATTTGA---------TTTTTTTGTTAATGAAA------GT-------GCTTGCGTTGAAATTTTCATTTAGTTGGTGTTTTCTTTTCA----T-GTTAGAC--ATG-CACTGATACAATA-------T-ACACATACAATT-T--AACGCA-GTATGGTTATT---AAC-TATTA-AAACGTTGGT-AGTACATT-GT-A-AATGC-AA-TTAACTTAATT-ACT--CTAATTGGAATAA-GGTATATGC-----A-T--GA--GAAA-T-TTctgat
gi|6 : GTTGGTGTTTT----------------TCTTTTAAA---T-GTCAGACC-ATGATAC---AATAATAACAATAAT-ACACATATAATT-T--AATGCA-GTATGGTTAATTCAAACTGATTA-AAACGTTGAT-AGTA-A-T-GT-A-AATGC-AA--TAACTTAATT-ATT--AT-ATTGG-ATAA-GG--TATATGTTAAA-T--GA--GAGA-T-TT-GTAAATCAAGTTA--ATATTTCTGAAAAAACAACCC-TTTAATGAAT---TTA-AGGTGATA--CGTGAT---TTAATTGAATTTC--AAAA-AGT--AT--------------A-ACTA-GA---TACT--GCG--TTG--ATGCAGAAtatatttc
gi|7 : ttgaaatttttatataATCT---------TGAA----T-CA--ATGC---AAGTCAATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AGAATGTTTCCC-----ACGA------G--GTG-GA--AAGAA------CGGCGC--GGTATTCC-AAT--G-TCAGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGATTATATG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGT
gi|7 : gTTCTTTCCACCT-------CGT----GGGAAACATTCTCTCAGCACGAACC-TGGATTGAAATTGACTTGCATTG----ATTCAAGATTGC---AATAATAGAC--ATTTGGTAAAACAtgcaataatagacatttggtaaaaca
gi|8 : gaccacggaacatagagtaacaaaattcgaaatatacagcggtcatataatctccatctgttacagtcaaaacatttgacgtcacaatgcactgacattggaataccgcgccgAAAAATGGCACAGT-CCGATATAAAAGTT------GGA-GTTTTCTTCTTTAA--TGGACATTTTTTT-----CATG-GCGCGACCTT-TCATTTTGAAAATCTC--GTGTTTACATC-ATTCGATTC-------AAA-CAATT-AAAAATGTTG-CCAT-TGAGTTGTTTTTTTTTTT----------A------ATTGAAAGGGCTTGCGTTGAAATTTTCA--------------T
gi|9 : ttta-AAACGTTGCT-AGTACATT-GT-A-AATGT-AA-TTAACTTAATT-ACT--ATAATTGGAATAA-GG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCC-TTTAATGAAT-----ACGGG--------------------------TTC--AAAA-AGTTAAT--ATT------TAAA-AATA-GA---TACT
blockSeqs : CT . A G GCT TTGAT T AG TA G CGA C AA CCATTTGGGGGGG . A T . A G T T G A C A T TCTTT . A T T T G T CCAA A AT T GTTGTTTTT TGTTAATGAAAGT TTTAGTTGGTGTTT GTGT T A AT TT AATAATAACAATAA G G TA G TAATTCA T T T T C AA T T . CA A C TA GTTAA . CT CA . A T AA A C TATAT C CG T TGATTATCT CG C TA . TAA G G . CTGCGC . G TG C GCTAACTGCAAAATG C AC TG T A A ATGTTCC A TGTTTAATATTTTTGGACCTCGTTTG TG T GGCCACATCC AGTG . TGC TT C C C TT C G T TTCCCATGA T TA . T AA . A . A . T TTG A . . TA AATAA G GG TG T
blockSeqs : T . . . GAC GAT T A . G CA . . TTAATC . . . . . . . T . A . . . . . . . . . . A C . TG A GGGTTCTT AATTGAAAGG . A . G C AA TGATACAATA . . . . TATT . . T . . AC . . . . A . . . . . . . . T A . . AC T C T TTAATTG . . TA . TA . . . GGGGC . . TG . TGTACTGCAAAAT . GA TG T A A GC . CC . T TG . . A AT . . . . . . . ACGGTG . . . . C . . . . . . . . . . . . . . . .
blockSeqs : T . . . . TTG T A . G . . . . . . . . . A . . . . . . . . . . T . . A A . AATGAAGGT . . . G . AT TATAAA . . . . TATT . . T . . A . . . . A . . . . . . . . T . . . AC C C T TTAATG . . TA . TA . . . CTGCG . . . . TCTGTACTTT . A . . A . . . . T . . A TT . . . . . . . ACGAG . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . T . . A T . AGT . . . . . A TATAAA . . . . AAT . . T . . A . . . . A . . . . . . . . . . . . TT C C T TTATTG . . TT . T . . . GC . . T . . G TT . . . . . . . ACGG . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . A . . AGT . . . . . C TTATA . . . . T . . A . . . . A . . . . . . . . . . . . . . . . . . . TA . . . . . T . . A C . . . . . . . ACGA . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . A . . . . A . . . . . . . . . . . . . . . . . . . . T . . A . . . . . . . . ACGA . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . ACAG . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . ACGA . . . . . . . . . . . . . . . .
blockSeqs : AG . . . . . . . . . . . . . . .
blockSeqCons : G**** ***** C*** TATAATA********** TATT*** T* C* TA ** TA******* *** GGC****** ** T********** ** A***** ACGA************** ***** ** *** ****** *** ** **
originalCons : CGATTCTTTCCAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACC-TGGATTGAAATTGACTTGCATTGATGCATTCAAGATTGCA-TAATAATAGAC--ATTTGGTAAAACATATTCAGAACAAGGTCCG-AAAGA-TATT--AA-----C------------GGGGGGGGGGGG-----C-ATATTTCAA-TCGTATTCAGAA-CGAAAGTATGA-GCTAGGTG-AATA-AGATATTTTGATTAAAAATC-CACAGT-CCGATATAAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGGACATTCTTTT-----AATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTT-ACATT-ATTT-ATTTTTC---AAAA-CAATTTCAAAATGT-A-CCATATGA---------TTTTTT----------A------GT-------GCTTGCGTTGAAATTTTCA--------------TCTTTTAA----T-GTCAGAC--ATGANAC---TATAATA-------T-ACACATATAATT-T--AACGCA-GTATGGTTANT---AAC-GATTA-AAACGTTGCT-AGTACATT-GT-A-AATGT-AA-TTAACTTAATT-ACT--ATAATTGGAATAA-GG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCC-TTTAATGAAT---ACACGGGTGATAC-CGTGGT---TT-ATTGAATTTC--AAAA-AGTTAAT--ATT------T-AA-AATA-GA---TACTG-GCG--CTG--AT-CAGAAACTGCA-GTTTTC---------TGTACTG-----T------GATCAG-CTAG-A-CGGATTGAAATTGAATTTTAAAAAATG-----CCCCC-CCC-----------------CC-------CGGTT--TAATATCT---------T-AA----TACA--A--A---AAGTGGATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCC-----ACG-------G--GTG-GA--AAGAAT-----CGGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGTAT
finalCons : CGATTCTTTCCAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACC-TGGATTGAAATTGACTTGCAG----GCATTCAAGATTGCA-TAATAATAGAC--ATTTGGTAAAACATATTCAGAACAAGGTCCG-AAAGA-TATT--AA-----C------------GGGGGGGGGGGG-----C-ATATTTCAA-TCGTATTCAGAA-CGAAAGTATGA-GCTAGGTG-AATA-AGATATTTTGATTAAAAATC-CACAGT-CCGATATAAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGGACATTCTTTT-----AATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTT-ACATT-ATTT-ATTTTTC---AAAA-CAATTTCAAAATGT-A-CCATATGA---------TTTTTT----------A------GT-------GCTTGCGTTGAAATTTTCA--------------TCTTTTAA----T-GTCAGAC--ATGANACTATAATA----------T-ACACATATAATT-T--AACGCA-GTATGGTTATT---AAC-GATTA-AAACGTTGCT-AGTACATT-GT-A-AATGT-AA-TTAACTTAATT-ACT--ATAATTGGAATAA-GG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTAT-ATATTTCTG--AAAAC-ACCC-TTTAATGAAT---ACACGGGTGATAC-CGTGGT---TT-ATTGAATTTC--AAAA-AGTTAAT--ATTTA-------A-AATA-GA---TAGGC------CTG--AT-CAGAAACTGCA-GTTTTC---------TGTACTG-----T------GATCAG-CTAG-A-CGGATTGAAATTGAATTTTAAAAAATG-----CCCCC-CCC-----------------CC-------CGGTT--TAATATCTT----------AA----TACA--AA-----AAGTGGATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCCACGA--------------GTG-GA--AAGAAT-----CGGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGTAT
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 333333333 2222 1 1 555555 11 111 1 11 888888888888888888 22222 1 2 1 1 1 1 11111 11111 1111 555555555 44444444444444444444444444 33333333333333 2222 11 11 22222222222222222 1111111 11111 11 11 11111 11 1111111111 1 33333333 111 4444444444 11 1 66666666666666666666666666666 1 111 2222222 1 11111111111111111111111111 11 22222222222 1111 111111 11 11111 11111111 111 11111 111111 111 11111
lowQualScore : 0 333333333 1111 0 0 555 444444 0 0 88 11 0 0 2 222 0 33 555555555555555555 55555 0 0 3 3 3 3 3 0 6 3 6 6 6 66666 66666 6 6 0 8 0 8 8 6 0 9999 8 666 7 000000000 77777777777777777777777777 33333333333333 0000 6 5 55 11 66666666666666666 6 6 99 8 0 7777777 8 5 1 5 5 555 5 5 5 66 3 5 66 22222 5 66 66 5 5 44 11 5 5 66666 3 0 22 1 5555555555 77 1 33 99 11111111 6 6 111 7777777777 11 8 33 0 44444444444444444444444444444 0 111 55 3 3 3 5555555 0 66666666666666666666666666 88 3 77777777777 2222 0 77 444444 33 4 4 4 66 4 4 4 88888 44444444 4 4 111 55 00000 4 99 55 4 777 4 111111 4 111 4 55 55 66 22222 5 77 77 0 5
lowQualScore : . ......... .... . . ... ...... . . .. .. . . . ... . .. .................. ..... . . . . . . . . . . . . . ..... ..... . . . . . . . . . .... . ... . ......... .......................... .............. .... . . .. .. ................. . . .. . . ....... . . . . . ... . . . .. . . .. ..... . .. .. . . .. .. . . ..... . . .. . .......... .. . .. .. ........ . . ... .......... .. . .. . ............................. . ... .. . . . ....... . .......................... .. . ........... .... . .. ...... .. . . . .. . . . ..... ........ . . ... .. ..... . .. .. . ... . ...... . ... . .. .. .. ..... . .. .. . .
lowQualScore : 2 555555555 2222 0 0 888 000000 8 8 88 00 6 8 5 888 0 88 000000000000000000 00000 0 0 3 3 3 3 2 8 7 2 7 7 7 77777 77777 7 7 8 0 8 0 0 0 8 0000 0 888 8 888888888 33333333333333333333333333 66666666666666 8888 7 2 88 00 00000000000000000 7 7 22 0 8 2222222 0 7 4 7 7 999 0 0 0 99 2 0 99 55555 0 99 99 0 0 11 99 7 7 99999 0 1 11 4 1111111111 99 4 00 22 55555555 7 7 777 7777777777 00 0 55 0 00000000000000000000000000000 0 000 88 2 2 2 5555555 0 77777777777777777777777777 33 2 44444444444 1111 1 99 444444 66 4 4 4 11 4 4 4 55555 33333333 0 0 000 55 00000 0 55 55 0 000 0 555555 0 000 0 55 55 11 55555 7 99 99 7 7
consensus : CGATTCTTTCCAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACC-TGGATTGAAATTGACTTGCATTGATGCATTCAAGATTGCA-TAATAATAGAC--ATTTGGTAAAACATATTCAGAACAAGGTCCG-AAAGA-TATT--AA-----C------------GGGGGGGGGGGG-----C-ATATTTCAA-TCGTATTCAGAA-CGAAAGTATGA-GCTAGGTG-AATA-AGATATTTTGATTAAAAATC-CACAGT-CCGATATAAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGGACATTCTTTT-----AATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTT-ACATT-ATTT-ATTTTTC---AAAA-CAATTTCAAAATGT-A-CCATATGA---------TTTTTT----------A------GT-------GCTTGCGTTGAAATTTTCA--------------TCTTTTAA----T-GTCAGAC--ATGANAC---TATAATA-------T-ACACATATAATT-T--AACGCA-GTATGGTT-ATT--AAC-GATTA-AAACGTTGCT-AGTACATT-GT-A-AATGT-AA-TTAACTTAATT-ACT--ATAATTGGAATAA-GG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCC-TTTAATGAAT---ACACGGGTGATAC-CGTGGT---TT-ATTGAATTTC--AAAA-AGTTAAT--ATTT-A------A-AATA-GA---TAC----G-GC-CTGA--T-CAGAAACTGCA-GTTTTC---------TGTACTG-----T------GATCAG-CTAG-A-CGGATTGAAATTGAATTTTAAAAAATG-----CCCCC-CCC-----------------CC-------CGGTT--TAATATCT---------T-AA----TACA--A--A---AAGTGGATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCC-----ACG-------AG-T-G---GA--AAGAAT-----CGGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGTAT
Reference ( family-2908 ) : CGATTCTTTCCAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACC-TGGATTGAAATTGACTTGCA--G--GCATTCAAGATTGCA-TAATAATAGAC--ATTTGGTAAAACATATTCAGAACAAGGTCCG-AAAGA-TATT--AA-----C------------GGGGGGGGGGGG-----C-ATATTTCAA-TCGTATTCAGAA-CGAAAGTATGA-GCTAGGTG-AATA-AGATATTTTGATTAAAAATC-CACAGT-CCGATATAAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGGACATTCTTTT-----AATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTT-ACATT-ATTT-ATTTTTC---AAAA-CAATTTCAAAATGT-A-CCATATGA---------TTTTTT----------A------GT-------GCTTGCGTTGAAATTTTCA--------------TCTTTTAA----T-GTCAGAC--ATGANAC---TATAATA-------T-ACACATATAATT-T--AACGCA-GTATGGTT-ATT--AAC-GATTA-AAACGTTGCT-AGTACATT-GT-A-AATGT-AA-TTAACTTAATT-ACT--ATAATTGGAATAA-GG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCC-TTTAATGAAT---ACACGGGTGATAC-CGTGGT---TT-ATTGAATTTC--AAAA-AGTTAAT--ATTT-A------A-AATA-GA---TA-----G-GC-CTGA--T-CAGAAACTGCA-GTTTTC---------TGTACTG-----T------GATCAG-CTAG-A-CGGATTGAAATTGAATTTTAAAAAATG-----CCCCC-CCC-----------------CC-------CGGTT--TAATATCT---------T-AA----TACA--A--A---AAGTGGATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCC-----ACG-------AG-T-G---GA--AAGAAT-----CGGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGTAT
gi|1 : ATCT---------TGAA----TGCATCA--ATGCAAGTCAATTTCA-ATTCA-GGTTC-GT--GC-TGAG-AAAATGTT-ACCTCTA-ACGATGAAGTAG-T-G---AA--AAGGACATACACAGCGCT-GGCATTC--AATTGG-TCGTGGCATTGAGTCG-ACGCGGGATCCAAATG-TTTTG--G-ACTTGGTAGAGCAGATACAGGT--TA
gi|1 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatacTCCTTTTCAC-TACTTCATCGTTAGAGGTAA-CATTTTCTCAGCACGAACC-TGAATTGAAATTGACTTGCATTGATGCATTCAAGAT-GCA-TAATAATAGAA--ATTTGGTAAAACATATTCAGAATAAG-TCCG-AAAGA-TATT--AA-----A------------GGGGGGGGGGGGGGGGGC-ATATTTCAAATCGTATTCAGAAACGAAAGTATGA-GCTAGGTG-AATA-AGATATTTTGATTAAAAATC-CACAGT-CCGATATAAA-ATTTTAAAAGAA-ATTTTTT-----AAATTGGACATTCTTTTATTAAAATC-ACACGCGCTC-TCAATTACAAATTCCCAGACGTT-ACATT-ATTT-A-TTTTC---AAAA-CAATTTCAAAATGT-A-CCATATGA---------TTTTTT----------A------AT-------GCTTGCATTGAAATTTTCA--------------TCTTTTAA----T-GTCAGAC--ATGAAAC---T---ATA-------T-ACACATATAATT-T--AATGCA-GTA---------------------------TGCT-AATACATT-GT-C-AATGT-AA-TTAAC-TAATTAACT--AT-ATTGGAATAA-GG--TATGC-----ACT--GA--GAAATT-TTTGCAAATCAAAGTATTATATTTCTG--GAgcataataatagaaatttggtaaaacatattcagaataagtccgaaagatattaaagggggggggggggggggcatatttcaaatcgtattcagaaacgaaagtatgagctaggtgaataagatattttgattaaaaatccacagtccgatataaaattttaaaagaaattttttaaattggacattcttttattaaaatcacacgcgctctcaattacaaattcccagacgttacattatttattttcaaaacaatttcaaaatgtaccatatgattttttaatgcttgcattgaaattttcatcttttaatgtcagacatgaaactatatacacatataatttaatgcagtatgctaatacattgtcaatgtaattaactaattaactatattggaataaggtatgcactgagaaatttttgcaaatcaaagtattatatttctggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttaaaaagtggatcaatccaggttcgtgctgagataatgttcccttcccatgagtggaaagaatcggcgctggcattcaatatcggtgcattgtgacgtcaaatgtttttgactgtaacaaatgagattgcgactgctgtatatttcgaattttttactctatgttctgtggtat
gi|1 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatactaacctgtatctgctctaccaagtccaaaacatttggatcccgcgtcgactcaatgccacgaccaattgaatgccagcgctgtgtatgA--A--A---AAGTGGAT--CA-ATCCA-GGTTC-GT--GC-TGAG-ATAATGTT-CCCTTCCCATG-------AG-T-G---GA--AAGAAT-----CGGCGCT-GGCATTC--AAT--A-TCGGTGCATTG---TG-ACG------TCAAATGTTTTT---G-ACT--GT--AACAAAT-GAGAT--TGCG-----ACTGCT-GTATATTTC--GAAT--TTT-TTACTCTA-TGTTCTGTGGTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttaaaaagtggatcaatccaggttcgtgctgagataatgttcccttcccatgagtggaaagaatcggcgctggcattcaatatcggtgcattgtgacgtcaaatgtttttgactgtaacaaatgagattgcgactgctgtatatttcgaattttttactctatgttctgtggtat
gi|10 : actctcagactgtagagtcaaaatgcattgaaccatatctacacaacttgtaatctgctcagatactaacctgtatctgctctaccaagtccaaaacatttggatcccgcgtcgactcaatgccacgaccaattgaatgccagcgctgtgtatgtccttttcactacttcatcgttagaggtaacattttctcagcacgaacctgaattgaaattgacttgcattgatgcattcaagatgcataataatagaaatttggtaaaacatattcagaataagtccgaaagatattaaagggggggggggggggggcatatttcaaatcgtattcagaaacgaaagtatgagctaggtgaataagatattttgattaaaaatccacagtccgatataaaattttaaaagaaattttttaaattggacattcttttattaaaatcacacgcgctctcaattacaaattcccagacgttacattatttattttcaaaacaatttcaaaatgtaccatatgattttttaatgcttgcattgaaattttcatcttttaatgtcagacatgaaactatatacacatataatttaatgcagtatgctaatacattgtcaatgtaattaactaattaactatattggaataaggtatgcactgagaaatttttgcaaatcaaagtattatatttctggannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggttttTAATACGCATGGT---TT-ATTGAATTTA--AAAACAG---ATCCATTT-GCGCCTGA-AGTG-GAATCTACGAGCG-GA-TTGAAAT-CAGAAACTACA-GTTTTTGTGTGGGCATGTTCTG-----T------GATCAG-CTAA-A-CGGATTGAAATTTAATTTT-AAAAATG-----TCTCC-C
gi|11 : AGTGGAT--CA-ATCCA-GGTTC-GC--GC-AGAG-AAAATGTT-CCC-----ACG-------GT-T-G---GA--AAGAAT-----CGGCACT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGtaggttttaatct
gi|12 : TAGCT---------T-AAAGTGTACA--A--A---AAGTGGAT--CACATCCA-GGTTCCGT--GC-TGAGGAAAATGTC-CCC-----A----------G-TTG---GATAAAGAAT-----CGGCGCTTGGCATTC--AAT--G-TCGATGCAACG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACG-----AC
gi|13 : tggcCC-----ACG-------AG-T-GT--GA--CAGAAT-----CAGCGCT-GACATTC--A-T--GACCATTGCATTA---TT-ACG------TAAAATC-TTTA---G-ACT--GT--AACGGATGAAGAG--CACG-----ATTACT-GTATATTTC----ATTGTTTGCCACTGAA-TGTTCCCTGGT
gi|14 : a---------T-AA----TACA--A--G---AA-TGGATTTGA-AACC----TT------------------TGTT-CCC-----ACG-------AG-T-G---GA--AAGAAT-----CGGCGCT-GGCATTCAAAAG--G-GCGTTGCATTG---TGAACG------TCAAATG-TTTT---GAACT--GT--AAC
gi|15 : TCAAAATGT-A-CCATTTGAGGGTTCTT-TTTTTT----------AATGAAGGT-------GCTTGTGTTTTAATTTTCA--------------TTTTGTAGGTGTT-GTC-------TTTTAA---TATAA-A-------T-ATACCTACAATT-T--AAgccga
gi|16 : GT-AA-TTAACTTAATT-ACT--ATAATTGGAATAC-AG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTCA-TATATTTTTG--AAAAC-ACCC-TTTAATGAAT---ACACGGGTG
gi|17 : TTGCA--G----ATGCA---TTGCAGCAATGATAGATTAATCCG----AAC-------GAGCTAGGTCCA-AAAGA-TATTAAAA-----CCATTTGGGGGGGGAGGGGGGGGGG-----C-ATTTTTTAA-
gi|18 : TGATTAAGAATT-CA--GT-CCGATATAAA-GTTTTGAAAGAA-AATTTAT-----AAATTGGACCTTCTTTT-----AATC-GCACGCGCTC-TCAATTACAA
gi|19 : TGTTTCTG--AAAAC-ACTG-TT-AATGAATTATATACAGGTGATACGCGTGAT---TT-AATGAATTTC--AAAA-AGTTAA
gi|2 : tacCGATTCATTCCAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACC-TGGATTGAAATTGCTTTGCATTGATGCATTCAAGATTGCA-TAATAATAGAC--ATTTGGTAAAACATATTCAGAACAAGGTC---GAAGA-TATT--AA-------------------AGGGGGGGGGG-----C-ATATTTCAA-TCGTATTCAGAA-CGAAAGTATGAAGCTAGGTGGAATA-AGATATTT-GATTAAAAATC-CAC-GT-CCGATATAAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGGACCTTCTTTT-----AATC-ACATGTG-TC-TCAATTACAAATTCCCAGGCGTT-ACATTTATTT-ATTTTTC---AAAAACAATTTCAAAA-GT-A-CCATAT-A---------TTTTTT----------A------GT-------GCTTACTTTGAAATTTTCA--------------TCTTTTAA----TTGTCA-AC--ATGAAAC---TATAA-A-------T-ACACATATAATT-T--A-CACA-GTATGGTA-AT---AAC-GATTA-AAACGTTGCT-AATACATT-GT-A-AATGT-AA-TTA-CTTAATT-TCT--ATAATTGGAATAA-GG--TA-GC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA--ATATTTCTG--AAAAC-ATCC-TTTAATGAAT---ACATGGGTGATAC-CGTGGT---TT-ATTGAATTTCCGAAAA-AGTTAAT--ATTT-A------AGAATA-GA---TA-----G--C-CTGA--T-CAGAAACTGCA-GTTTT-----------GTACTGCAAAAT------GATCAG-CTAG-A-CAGATTGAAATTGAATTTTAAAAAATG-----CCCCC-CCC-----------------CC-------CGGTT--TAATATCT---------T-AA----TACA--A--A---AAGTGGATATCA-ATCCA-GGTTC-GT--GC-TGAG-AAAATGTT-CCC-----ACA-------GA-T-G---GA--AAGAAT-----CAGCGCT-GGCATTC--AAT--G-TCGGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACA-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCATGGTAT
gi|3 : AATGAATTTCA-ATCCACGGTTC-GT--GC-TGAG-AGAATGTT-CCC-----ACG-------AG-T-G---TA--AATAAT-----CTGCGCT-GGCATTC--AAT--G-TCGGTGCATTG----G-ACG------TCAAATG-TTTTTTGA-ACT--GT--AACATATGAAGA---TACG-----ACCACT-GTATATTTCGGGAAT--TTTGTTACTCTATTGTTCCGTG
gi|3 : acgGATTATTTACAC-T-------CGT----GGGAA-CATTCTCTCAGCACGAACCGTGGATTGAAATT--------------CATTCAAGATTGCA-TAATAATAAAC--ATTTGGTCAAACATATTCAGAACAGGGTCCGAAAAGACTATT--AATTAATC------------GGGGGTCGGGGG-----CAATATTCCAATTCGTATCAATCA-CGAAAGTATGA-GCTAGGTG-AATATAGTAATTTTGA-TAAAAATC-CACAGTCCCGATATAAA-GTTTTAAAAGAATGTTTTAT-----AAATTGGACATTCTTTT-----AATCAACACGCACTCTTCAATTATAAATT-CCAGGCGTT-AC-TT-ATTT-AATTTTCCAAAAAA-CAATTTTCAAATGT-ATCCATATGA---------TGTTTT----------A------GT-------GCTTACGTTGAAATTTTCA--------------TCTTTTAA----T-GTCAAGCATATGA-AC---T-T-ATA-------TGACACATATAATTGTTAAACGCAGGTATGGTT-ATT--AAC-GATTATAAACG-TGCT-AATGCTTT-GTAA-AATGT-AATTTAACTTAATT-ACT--ATAATTGTAATAA--G--TATGC-----A-T--GA--GAAA-TAATCGCA--------------ATTTCTGA-AAAAC-ACCC-TTTAATGAAT---ACACGGGTGATAC-CGTGGTTGATT-ATCTGATTTC----AA-AGTTAAT--ATTT--------A-AATAGGA---TAGG---G-GC-CTGA--T-CAAAAAT--CA-GTTTGC---------TA-ACTG-----CAAAATGGATCAGCCTAA-ACCGGATTGAAATTGAA-TTTAAA-----------CCCC-CCC-----------------CC-------TGGTTTGTAATATCT---------T-AA----TAcaagattgcataataataaacatttggtcaaacatattcagaacagggtccgaaaagactattaattaatcgggggtcgggggcaatattccaattcgtatcaatcacgaaagtatgagctaggtgaatatagtaattttgataaaaatccacagtcccgatataaagttttaaaagaatgttttataaattggacattcttttaatcaacacgcactcttcaattataaattccaggcgttacttatttaattttccaaaaaacaattttcaaatgtatccatatgatgttttagtgcttacgttgaaattttcatcttttaatgtcaagcatatgaacttatatgacacatataattgttaaacgcaggtatggttattaacgattataaacgtgctaatgctttgtaaaatgtaatttaacttaattactataattgtaataagtatgcatgagaaataatcgcaatttctgaaaaacaccctttaatgaatacacgggtgataccgtggttgattatctgatttcaaagttaatatttaaataggataggggcctgatcaaaaatcagtttgctaactgcaaaatggatcagcctaaaccggattgaaattgaatttaaaccccccccctggtttgtaatatcttaata
gi|4 : acgcacggaacaatagagtaacaaaattcccgaaatatacagtggtcgtatcttcatatgttacagttcaaaaaacatttgacgtccaatgcaccgacattgaatgccagcgca-AAACGTTGCTTAGTACATTCGT-ACAATGTTAA-TTAACTTAATT-ACTCAATAATTG-AATAACGG--TCTGC-----A-TCTGACAGAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCCCTTTAATGA---------------TAC-CG-GGT---------------C--AAAACAGTTTAA--ATTT-A------A-AATA-AA---TACT---GCGC-CTGA--T-CAGAAACTGCACATTCTC---------TGTACTT-----T------GATCAG-CGAGGA-CGGATTGAAAT--ATTTTTAAAAAATATGTTCCCCCCACCCTGTTTAATATTTTTGGACCTCGTTTGCGGAT--TAA-ATCTGGCCACATCC-AA----TATC--A--A---AGATGA---CCA-A-CCA-GGTTC-GTTTGCCTGAG-AAAATGTT-CC------ACG--------G-T-GACGGA--AAGAAT-----CG---------ATTC--AAG--G-TTGGTGCATTG---TG-ACG------TCGAATG-TTTT---G-ACT--GT--AACAGATGGAGAT--TACGAATAAACCGCTGGTATATTTC--GAAT--TT--TTACTCTA-
gi|5 : TTAAAAATT-CACAGT-CCGGTATGAA-GTTTTAAAAGAA-ATTTTAT-----AAATTGAACATTCTTTT-----AATC-GCACGCGCTC-TCAATTACAAATTCCCAGGCGTT-ATATT-ATTT-ATTTTT----AAAA-CAATTTCAAAATGT-A-CCATTTGA---------TTTTTTTGTTAATGAAA------GT-------GCTTGCGTTGAAATTTTCATTTAGTTGGTGTTTTCTTTTCA----T-GTTAGAC--ATG-CACTGATACAATA-------T-ACACATACAATT-T--AACGCA-GTATGGTT-ATT--AAC-TATTA-AAACGTTGGT-AGTACATT-GT-A-AATGC-AA-TTAACTTAATT-ACT--CTAATTGGAATAA-GGTATATGC-----A-T--GA--GAAA-T-TTctgat
gi|6 : GTTGGTGTTTT----------------TCTTTTAAA---T-GTCAGACC-ATGATAC---AATAATAACAATAAT-ACACATATAATT-T--AATGCA-GTATGGTTAATTCAAACTGATTA-AAACGTTGAT-AGTA-A-T-GT-A-AATGC-AA--TAACTTAATT-ATT--AT-ATTGG-ATAA-GG--TATATGTTAAA-T--GA--GAGA-T-TT-GTAAATCAAGTTA--ATATTTCTGAAAAAACAACCC-TTTAATGAAT---TTA-AGGTGATA--CGTGAT---TTAATTGAATTTC--AAAA-AGT--AT--------------A-ACTA-GA---TAC----T-GCGTTGA--TGCAGAAtatatttc
gi|7 : ttgaaatttttatataATCT---------TGAA----T-CA--ATGC---AAGTCAATTTCA-ATCCA-GGTTC-GT--GC-TGAG-AGAATGTTTCCC-----ACG-------AGGT-G---GA--AAGAA------CGGCGC--GGTATTCC-AAT--G-TCAGTGCATTG---TG-ACG------TCAAATG-TTTT---G-ACT--GT--AACAGATGGAGATTATATG-----ACCGCT-GTATATTTC--GAAT--TTTGTTACTCTA-TGTTCCGTGGT
gi|7 : gTTCTTTCCACCT-------CGT----GGGAAACATTCTCTCAGCACGAACC-TGGATTGAAATTGACTTGCA--T--TGATTCAAGATTGC---AATAATAGAC--ATTTGGTAAAACAtgcaataatagacatttggtaaaaca
gi|8 : gaccacggaacatagagtaacaaaattcgaaatatacagcggtcatataatctccatctgttacagtcaaaacatttgacgtcacaatgcactgacattggaataccgcgccgAAAAATGGCACAGT-CCGATATAAAAGTT------GGA-GTTTTCTTCTTTAA--TGGACATTTTTTT-----CATG-GCGCGACCTT-TCATTTTGAAAATCTC--GTGTTTACATC-ATTCGATTC-------AAA-CAATT-AAAAATGTTG-CCAT-TGAGTTGTTTTTTTTTTT----------A------ATTGAAAGGGCTTGCGTTGAAATTTTCA--------------T
gi|9 : ttta-AAACGTTGCT-AGTACATT-GT-A-AATGT-AA-TTAACTTAATT-ACT--ATAATTGGAATAA-GG--TATGC-----A-T--GA--GAAA-T-TTCGCAAATCAAGTTA-TATATTTCTG--AAAAC-ACCC-TTTAATGAAT-----ACGGG--------------------------TTC--AAAA-AGTTAAT--ATTTAA------A-AATA-GA---TA-----