lowQualScore : 1111111111111111111111111111 11111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : 2 1 33333 44444444 1 1 11 777777777 22 1 22222 1 4444444444444444444444444444 33 22 3333333 2 55555555555555555555555555555555555555555555555 2222222222 2 11 444444444 1 1 333333 111 1111111 11 1111 66666666666666666666 11 33333333333333333333 11 1111111111111111111111111111111111111111111111111111111 1 44444444 1 333333 111 22 1 1 1 1 1 222 11 1111 22 444444444444 1 11 1111 11 7777777777777777777777777777777777777 444444444444444444444444 111 11 333333 33333 4444444 555555555555555555 11 1 111111111111 1 1 7777777777777 1111 33333333333333333333 1 1 11 111 11 1 44444 11 4 1 1 2 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 222 33 333 1
lowQualScore : 8 3 55555 7 6 1 77777777 7 5 44 000000000 44 7 77777 6 3 1111111111111111111111111111 11 22 0 4 6666666 6 3 7 77777777777777777777777777777777777777777777777 3 6 6 8888888888 3 7 6 00 111111111 44 1 4 1 2 4 111111 0 6 1 444 7777777 22 0000 5 66 99 0 00000000000000000000 5 33 8888 22222222222222222222 33 7777777777777777777777777777777777777777777777777777777 0 66666666 6 3 6 888888 888 44 6 3 3 3 2 5 333 44 8888 6 44 555555555555 7 4 8 3 33 6666 22 2222222222222222222222222222222222222 666666666666666666666666 666 9 88 88 888888 7 00000 3333333 6 777777777777777777 5 33 0 555555555555 0 3 2222222222222 9999 88888888888888888888 88 3 2 66 555 3 88 3 11111 22 6 0 7 5 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 6 3 6 000 55 888 88 5
lowQualScore : . . ..... . . . ........ . . .. ......... .. . ..... . . ............................ .. .. . . ....... . . . ............................................... . . . .......... . . . .. ......... .. . . . . . ...... . . . ... ....... .. .... . .. .. . .................... . .. .... .................... .. ....................................................... . ........ . . . ...... ... .. . . . . . . ... .. .... . .. ............ . . . . .. .... .. ..................................... ........................ ... . .. .. ...... . ..... ....... . .................. . .. . ............ . . ............. .... .................... .. . . .. ... . .. . ..... .. . . . . . ....................................................................................................................................... . . . . ... .. ... .. .
lowQualScore : 5 3 00000 3 7 0 00000000 0 0 00 000000000 33 0 77777 0 3 0000000000000000000000000000 77 33 7 7 0000000 0 7 0 77777777777777777777777777777777777777777777777 7 7 7 2222222222 3 8 7 22 666666666 88 7 0 9 0 0 555555 3 6 1 222 6666666 88 6666 0 99 44 5 00000000000000000000 0 66 1111 99999999999999999999 66 2222222222222222222222222222222222222222222222222222222 0 22222222 5 3 7 333333 333 00 7 3 3 3 3 0 333 00 7777 7 00 000000000000 0 0 3 3 00 7777 77 0000000000000000000000000000000000000 333333333333333333333333 777 0 33 33 777777 3 00000 3333333 5 222222222222222222 0 00 0 222222222222 0 3 7777777777777 7777 77777777777777777777 33 3 0 55 000 2 33 3 77777 00 0 0 0 0 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 0 0 555 00 555 00 5
consensus : CAAAGCATATAAAGCT-AAA----GAGTATCACT-----G--AAAATAATACTAGGAAAA-ATAT----AN--NTAGAAGGATAGTAAAAGA--A--CGCA-AAATTAT------------AAAA--GT------TAAAT-AAACTGATT-ACAAAGGAGTANAAA--A--AGACAGAGT-AGGCCAAAG--GTGTATA-AAATATAAA--AAAGAAA--G-CTTT--AACTAA-TTGANTTAGCAT-C-AAA-C---TTGTCGTGGGGTTGGGCCAAT-CC-CTACCTCCACCACAT-----CATGCT-AAAG-AANGAAAAGA-AAAT-A------AGATANATT-A-CAAGCAAAC-AA-A--ACTAAAATAAAG----C-TTTA--CAGAATAAAGC-GGTACAGGTAGAG-C----AGATG-AAA--GGTTTGAA--AATA--N----CAA----------AAA--GCAAGAAAA-GACT-TG--AACTAA--AAT-GNAAA-----A---AGNAAACT----------CAAAA-GAAAT-------GCAACTCATTCAG-CCATGCA------CCTCCACGCTGTG-TACTC-ACAA-GAGCTG-CAT-CTGCAGTCATCCCCCT---TCCAGGTA-GCAATAAAAGCCCTAAATTGGTTGAAGGTTGAAAATTT-C-C-T-----TACATGNTTAG-GTAGTGAGTTCCACAGCGTGG-----C-GGCTACGTAGCTNA-AC-GA----------CTGTTTN-CC----ATAC---NNAGTA---GTTCTT-G-GTCTAGG--TAGGTCCAGTGTT-TTTGGTACC---TGAAATT-------GTTNCTAGAGTTTC---TCAAT-TGT------ACCAGGTC-GTGCAGA-AAC-AATGGA-C-T-TTGTT-TGT-TG-AC-----AA---TTTAAAAACNTN-AAG-GGCCG----TGGCTCTCAGTGCGTCCGGT-TTTCACAGAGN-GAAG-ANTTGATTTTTCT--AAGAGAT-GGTTGTAT----GTACTAGTATAGTCCNTCGTAAATAAATCTTAATGCTCGTTCTTTGAATTTTCCTCGCAANTTNTTTTNCNNCATTTT---------TGTTCGCTGNAAAGGGGCCAAAACTTAGAGTGGAGAGAAGCAACGAGAGNTANGACATCTNTAAAGTTCGGACATNAGTGGTGACGNGNNTAGAATGGTTAATTTACCTAACCNACAGAGATGTTTTCGTTACAGCCGTTTNNGTACATTTAATTGGCG
Reference ( gi|1 ) : CAAAGCATATATAGCT-AAA----CAGTATCATT-----G--AAAATATTACTACGAAAA-GTAT----CC--TTAGAAATATAGTTAAAGA--A--CACA-AAATTCT------------AAA-----------TAAA--AAACTGATT-GCAAGGGAGTAAAGA--A--AGACAAAGTAAGGACAACG-GATATATATATATATAAATTAAAAAGATTGACTTT--AACTAAATTGACTTAGCAT-C-AAA-C---TTGGCGTGGCGTTGGACCAAT-CC-TTACCTCCACCACATG----CATGCT-AAGG-AATGAAAAGA-AAAT-A------AGATACATT-A-CAAGCAAAC-GA-A--ACTAAAATAAAG----C-TTTA--CAGAACAAAGC------AGGCAGAA-A----AGATG-AAA--GGTTTGGA--AATA--A----CAA----------AAA--GCAAGAAAATGCCTATG--AACTAA--AATTGAAAA-----A---AGGAAACT----------CAAAA-GAAA--------GCAACTCATTCAG-CCATGCA------CCTCCACACTGTG-TGCTTGACAA-GAGCTG-CAT-CTGCAGTTATCCGCCT---TCCAGGTG-GCAATAAAAGCCCTAAATCGATTGAAGGTTGAGCATTT-C-C-T-----CAAATGATTTG-GTAAGGAGTTCCACAACGTGG-----C-GGCTACATAGCCGA-AT-GA----------CTGTTTT-CC----ATAC---CTAGTA---GTTCTT-G-GTTTAGG--TAAGTCCAGGGTCATTTGGTACC---TTAAATT-------GTTCTTAGAATTTC---TCAAT-TGT------ACCAGATC-TTGTAGA-AAC-AATGGA-C-T-TTGTT-TGT-TG-AC-----GA---TTTAAAAACGTC-AAG-AGTCA----TGGTTTTCA-TGCGTTTGGT-TTTCAAAGAGG-GAAG-GTTTGATTTTTCT--AAGAGAT-GGTTGTAA----GTACTGATATGGTCC-TCGTATATAAATCTTAATGCTAGTTC-TTGAATTT--CT--CAA---------------TTTAAAAAAAAATGTTCGCTGCAAAGGTGCC-AAAC-TAAA--GGA------T-------ATTAC-----CTA-AAAGTTT--ACATCA----TAAAA-------------TACTTTACCCAACCTACAAAGATGGTTTCG-TACA-T-GTTTTAGTACATTTAATTGGCG
gi|5 : CAAAGCATATA-AGCT-AAAAGAGCAG-ATCACT-----G--AAAATAATACCAGGAAAA-ATATAATATC--ATAGAAAGATAGTAAAAGAGAA--CGCA-AAGTTAT------------AAAATAGTATGAAATAAAT-AAACTGATTTACAAAGGAGTAAA-A--ATTAGACAGAGT--GAACAAAGTGGTATATAAAAATATAAA--AAAGAAA--GACTTTTAAACTAA-TTGTATTAGCATGC-AA--------GATGTGG-GTTGTGCCAAT-AC-CGACCTCCACCAAAT------ATGCA-AAGA-AA--AGTAGA-AAAT-A-------GATAAAAT---CAAGCACTC-AA-A--GCTAAAA---GG----C-GTTG--TAGA--------------GGCAGA----------TG-AAA--GGTTTGAA--AATATCG----CAAGAAAGAAAGAAAA--GCAAGAAAATGACT--G--AACTAA--AAT
gi|6 : caatgcaaaaaccatgatacatatttacacatctaattatgaataaataataatattaaagaaatttcacatattcaacagaatgaaaagaattgacaagatacataggcattttaagtaCAAAGCATATAAAGCTAAAA----GAGTATCACT-----GAAAAAAAAAAACTAGGAAAATATAT----AA--CTAGAAG-ATAGTAAAAAA--ACCCGCA-AAATTATAAAAAGTATTCAAAA-----------TAAA--TAACTGACT-CCAAAGGAGTAGAAATTA--AGACAGAGT-AGGCCAA----GTGTATA-AAAAATAAA--AAAAGAAATACTTTT--AATTAAATTGACaa
gi|7 : ggaagcagataaattaaaagcaattcacaagcattttaaatacaataT-AAA----GAGTAT-ATTCAAATA--AAAATAATACTAGGAAAA-GTAT----AGAGTTTGAAGGATAGTAAAAGA--A--CGCATAAACATT------------AAAAGTAT------TAAATTAATCTGATT-ATTAGGGAGTTTAAA--A--TGACAGAGTAAGGCCAAAG---------TGTGTGTAAAC-----AGA-----------------TTGATTTAGCAT-CAAAA-C---TTGGCGTGGGGTTGGaagcaaacagagactgaaaaaaagctttacagaataaagctggtacatgtagagcagatgaaaggtttgagaatatcaaaaagcaagaaaaagactgaacta
gi|8 : gctTTAGCAT-C-AA--C---T----GTGG-GTGGGTC--AT-CC-CTACCTCCACCACATA----CATGCTAAAGG-AAAGAAAAGA-GAAT-A------AGATACATT-ACCAAGCAAAC-AA-AATACTAAAATAAAG----C-TTT----AAACCAAAGCA-----AGGTAGAGCC----AAATGAAAA--GGTTTGAA--AATA--A----CAA----------AAA---TAAGAAAtaaaggacagaaagaaatagagtagctacaagcaaacacaaccaaaataagttttattgcacatagcaggtatagaatgcagatgaaagggtttaaaaatgaatataagaaggaaaagcctgtaaaggaaacaaatgtaaaaaaaaaaaaaaaagc
gi|14 : TAGCAT-C-AAAAC---TTGTCGTGGGGTGGGGTCAATGCCATTACCTCCA
gi|4 : AGCAT-T-ATA-CATCTTGTCATGGGGTTGGGTCAAT-CC-CTGCC---ACCACA-------ACGCT-AAAATAAAGAAAAGA-GAACGA------AAAT-TATT-A--AGGCAAAC-AATA--AATAAAATAAAG----CGTTCAATTAAAATTTAGC------AG-TAAAG-C----AGATG-AAG--GGCCGAGA--ATCT--G----CAT----------AAA--GCAAGAAAA-----AAGGTAACTAA--GAC---------------AGTAAATT----------AAAAA-GATG--------G--ATTTATTCAG-CCATGCA------CCTCCACGCTGTG-TTCTCGA-AG-GAGTTG-CAT-CTGCAGCCCCCCCCCCCCCTCCAAGTG-GTAATGAATGACCTAAGTTGGTTGAAGGTGGAA-ATTT-C-CCT-----TACATGGTTAG-GTAATGAGTTCCACAGCGTGGGCTGGC-GGCTACATAGGTAA-AC-GA----------CTGTTTA-CC----ATAC---CTAGTA---GTTCTT-G-GTCCAGG--TAGTTCCAAAGTTTTTTAGTATC---TGAAATT-------ATAGTTAGAATTTC---TTATC-TGT------ACCAAGTT-TTGCAGA-AAC-AAAACA-C-C-TAGTT-T
gi|12 : tgataatgataaatagtaatcaaaataaatagcagtttacaaaagagtttagaattttatcaaagcaaggccaaaatgtatgaaattatagacaAT-C-AAAAC---TTGTCGTGGGGTTGGGTCAAT-CC-CTAC-TCCACTA----------TGCT-AAAG-GAAGAAAAGA-AAAT-A------AGATAC--T-A-CAAa
gi|10 : taaaGTTGGGCCAAT-CC-CTACCTCCACCACATGTATACATGC-----G-AACGAAAAGAGAAAT--------AGATACAAT-A-CAAGCAAAT-AG-A--ACTAAAATAAAG----T-TTTA--CAGAATAAAGC------TGGTAGAG-C----AGATG-A
gi|7 : ggTGGT-AAAG-GACAGAAAGA-AA-T-A------GAGTA-GCT-A-CAAGCAAAC-AC-A--ACCAAAAT-AAG----T-TTTA--TTGCACATAGC------AGGTATAG-AATGCAGATG-AAAG-GGTTTAAA--AATG--A----ATA----------TAA--GAAGGAAAA-GCCTGTA--AAGGAAACAAATGTAAA-----A---A--AAA-------------AAAA-AAAA--------GC
gi|13 : gcttaaagagtatattcaaataaaaataatactaggaaaagtatagagtttgaaggatagtaaaagaacgcataaacattaaaagtattaaattaatctgattattagggagtttaaaatgacagagtaaggccaaagtgtgtgtaaacagattgatttagcatcaaaacttggcgtggggtCT-AAGG-GAAGAAAAGA-AAAT-A------AGATAC
gi|6 : cccagtccactatgataagcT-AAAA-AATAAAAAAAGAAAT-ACTTTT-AATTAAATTGA-CAAGCAAACAGA-G--ACTGAAAAAAAG----C-TTTA--CAGAATAAAGCTGGTACATGTAGAG-C----AGATG-AAA--GGTTTGAG--AATA--T----CAA----------AAA--GCAAGAAAAAGAC--TG--AACTAtataa
gi|3 : ggaagcagataaattaaaagcaattcacaagcattttaaatacaatacaaagcatataaagctaaaagagtatcactgaaaaaaaaaaactaggaaaatatataactagaagatagtaaaaaaacccgcaaaattataaaaagtattcaaaataaataactgactccaaaggagtagaaattaagacagagtaggccaagtgta-AAAA-AAAAAAAAGG-AAAT-ACTTTATAATTAAATTGA-CAAGCAAAC--A-G--ACTGAAA-AAAGATGTC-TTTA--CAGA-TAAAGCTGGTACATGTAGAG-C----AGATG-AAAAAGGTGTGTATAGATG--AGGTGCGA----------AAGTGGCAGAAAAAC-----TG--AACTAA--AA--GGAAA-----A---CAAAAACCAGTGTGAAGCCAAAA-GAAATTGTGTCTGTAGCTCATTCAG-CCATGCAGTCGGGCTTCCACACTGTG-TACTCTACAAAGAGCTG-CATTCTGCAGTTATCCCCCT---TCCAGGTACGCAATAAAAGCCCTAAATTGATTGAAG--TGGAAATTTCC-C-T-----CACATGATTAG-GTAGAGAGTT-CACAG-GTGG-----CAGGCTGCATTACCTG-ATGGA----------CTGTTTT-CCGATGATGCGCGTGAGTGTATGTCGTTGG-GTCTAGG--T-AGTCCAGTCTT-TTTGGTACC---TAAAAGT-------GATATTAGAGTTTCCGGTCGAG-TG-------AATAGTTCGGTGTAGA-GACGAGTGAG-CGTGTTGTTGTGTGTGTGC-----AATTTTTTAAAACTGCG-AGG-GGCCA----TGGTTCTCAGTGCG-TCGGT-TTTCACAGAGATGATG-AGTTGA-TTTTCT--AAGAGATAGGTTGTAGTGTTGTACTAGTATAGTCCATCGTAAATAAATCTTAATGCTCGTTCTTTGAATTTTCTT--CAAATTGTTTTTTTGCATTTT---------TGTTCGCTGCAAAAGGGCC-AAACTTAGAGTGGA------C-------GGTAA-----CTT-AAAATTCGGACATTA----TAAAGAATGTAGAATGGTTAATTTACCTAACCGACAGAGA-GTTTTCGTTACAGC-GTTTATGTACA-TTAATTGGCG
gi|2 : -AATAAAAAAAGAAAT-ACTTTT-AATTAAATTGA-CAAGCAAAC-AG-A--ACTGAAA-AAAG----C-TTTA--CAGAATAAAGCTGGTACATGTAGAG-C----AGATG-AAA--GGTTTGAG--AATA--T----CAA----------AAAA-GCAAGAAAAAGACT--G--AACTAA--AGT-GAAAACAAAAACCCAGGAAGCT----------CAAAAAGAAAT-------GCAACTCATTAAGGCCATG-A------CCTCCACACTGTGACACT--ACAA-GAGCTGACAT-TTGCAGT-ATCCCCCT---TCCAGGTA-GCAATAAAAGCCCTAAA-----TGAGAGTTGAGAAATT-CAC-TGATCATAAAAGCTATGAGTAGTGA---TCACAGCGTGG-----------ACGCAGCTGAGAT-GAATTAGAGGTGATGTTTCACA----ATAC---ACGG-A---GGTCGT-GTGTGTAGGTCTAGGTCTAGTGTAG---GGT-CCGGGTGAAATTATGTAGAGTTTCTAGAGTTCA---T-AATATGT------ACCAGATC-GTGTAGA-AAC-AATGGATC-T-TTGTT-TGT-TG-A------AA---TTTTAAAACTTCGAAG-GGCCATTTCTGG-TCCCA-TGCGTCTGGT-TTTCACAGAGT-GAAGAGTTGAATTTTTCTAAAAGAGAT-GGTTGTAT----GTACTAGTATAGTCCTTCGTAAATAAATCTTAATGCTCGTTC-TTGAATTT--CTCGCAATTTTTTTTGCAT---TTT---------TGTTCGCTGAAAAG--GCTAAAAC-TAGA--GGAGAGAAGTAACGAGAATTACGACATCTATAAAG-----ACATAAGTGGTGACATGGT---------TAATTTACCTAACCTACAGAGATGTTTTC--TACA-TCGTTTTAGTACATTTAATTGGCG
gi|9 : aaaTTCCTGCAATTTC-----AAT-TACCCTGAAACCAAGTC-TTGCAGGTAAC-A--GGA-C-T-TTGCT-TGT-TG-ACCAAATTA---TTAAAAAACCTT-AAGCGGTTG-----GGCTCTGAGTACATCTGGTATTCCAGTGAGG-GAAG-ATTTAATTagctgctttctgcaaatgcatatctgacgatat
gi|15 : GAGT-GAAG-AGTTGATTTTTCT--AAGAGAT-GGTTGTAT----GTACT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): GATAATGATAAATAGTAATCAAAATAAATAACAATTTACAAAAGAGTTTAGAATTTTAGCAAGGCAAGGCCAAAATGTATGACATTATAGACAAGCATTATACATCTTGTCATG
Unaligned ( gi|16 ): TTTTAGGAACAGAGTAAGGCCAAAGCGTATATGT
Alignments
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 2 222222 11 11 1 333333 11 11 888888888888888888 333 3333333 22 333333 88888888888888888888888888888888888888 11111111 3333333333 1 2222222 1 11 1 4444444 11 333333333333333333 11 3333333 111 1111 222222222 333333333333 3333333333 1 222222 1 22 1 1 1 1 111 1 1 1111 2222 1 22222 11 1 111 4444444444 222222 22222222 1 1 1 11 11 1111 111 3333333 111111111 11 111 1 22222 33333 11 1 222222 1 1 1 11 11 1 2222 1 2 444444 444444444 1 111 1111111111111111111111111111111111111111111111111111111111111111 22 44
lowQualScore : 7 0 222222 00 33 0 777777 8 33 33 8 555555555555555555 0 666 8 22 2222222 0 44 000000 11111111111111111111111111111111111111 44 5 5 99999999 2 0 66 1 6666666666 1 7 11 0 3 9999999 111 2 4 44 00 0 9999 4 0 4 3333333 22 8 4 11 5 5 555555555555555555 11 5 2222222 000 2222 999999999 1 777777777777 8 6666666666 6 0 2 888888 2 0 1 66 0 0 0 0 777 0 777 2 0 1111 1111 1 0 1 3 2 2 2 55555 22 2 0 1 111 3333333333 1 222222 55555555 3 0 0 0 0 33 8 33 8 1111 3 777 0 2222222 33 888888888 3 1 33 8 999 8 000 8 0 11111 22222 1 11 0 666666 0 5 4 3 11 99 1 8 3 33 0 1111 4 3 666666 1 222222222 1 2 7 888 0000000000000000000000000000000000000000000000000000000000000000 6 1 7 22 33 22 7
lowQualScore : . . ...... .. .. . ...... . .. .. . .................. . ... . .. ....... . .. ...... ...................................... .. . . ........ . . .. . .......... . . .. . . ....... ... . . .. .. . .... . . . ....... .. . . .. . . .................. .. . ....... ... .... ......... . ............ . .......... . . . ...... . . . .. . . . . ... . ... . . .... .... . . . . . . . ..... .. . . . ... .......... . ...... ........ . . . . . .. . .. . .... . ... . ....... .. ......... . . .. . ... . ... . . ..... ..... . .. . ...... . . . . .. .. . . . .. . .... . . ...... . ......... . . . ... ................................................................ . . . .. .. .. .
lowQualScore : 3 0 222222 22 88 0 000000 8 88 88 0 888888888888888888 8 000 0 44 2222222 8 88 888888 44444444444444444444444444444444444444 88 0 0 00000000 5 1 99 4 6666666666 9 3 44 9 6 9999999 999 0 0 88 66 2 4444 6 1 7 8888888 22 9 4 99 0 0 444444444444444444 99 0 9999999 000 1111 888888888 0 000000000000 0 0000000000 5 0 5 888888 0 0 2 55 0 0 0 5 555 0 555 5 0 8888 2222 0 0 2 5 5 5 5 00000 55 0 0 0 888 8888888888 0 222222 55555555 2 0 0 0 2 88 8 88 8 5555 2 555 2 5555555 00 000000000 2 4 00 0 888 0 000 0 0 00000 22222 0 00 0 555555 5 0 5 2 00 00 0 0 2 88 0 2222 0 7 777777 0 777777777 0 0 3 000 0000000000000000000000000000000000000000000000000000000000000000 7 0 3 00 77 00 3
consensus : CAAAGCATATAAAGCTAAAAGAGTA--T---CAC-TGAAAATAATA--CTAGGAAAA-GTATAATGT--TAGAAGGATAGTAAAAGA--AC--GCAAAATTAT-AAA-A--G---TAT----TCAAAATAAATA-CTGATT-ACAAAGGAGTANAAA--AT---AGACAGAGTAAGGCCAAAGT-G-TGTATAAA-A-T-AT-AAA--AAAGAAAT--A-CTTT--AACTAA-TTGANTTAGC-AT-CAAAACTTGTCGTGGGGTTGGGTCAATCCC--TACCTCCACCAC-AT-----CATGCTAAAG-AANGAAAAGA-AAAT-A------AGATANATT-A-CAAGCAAACAG-A--ACTAAAATAAAG----CTTTACAGAATAAAGC-GGTA-CAGGTAGAG-CAGATG-AAA--GGTTTG-A-AAATAN----C------------GAAAA--GCAAG-AAAA-GACT-TGAACTA---AAAT-GAAAA-----A---AGGAAACT----------CAAAA-GAAAT-------GCAACTCATTCAG-CCATGCA------CCTCCACACTGTG-TACTC-ACAA-GAGCTG-CAT-CTGCAGTTATCCCCCT---TCCAGGTG-GCAATAAAAGCCCTAAATCGATTGAAGGTTGA-AAATTCCCTT-A-CAT----GAT-TAGGTAGNGAGTTCCACAGCG-----TGGC-GGCTACAT-AGCTGA-ACGACT----------GTTTTCC----A-TACNCG-----GTA-GTTCTTG-G-TCTAGGT--AGGTCC--AGTGTT-TTTGGTACC---TGAAATT-------GTTNTTAGAGTTTC---TCAAT-TGTACCAGGTCT-TGTAGA-AACAA-TGGA-C-T-TTGTT-TGT-TG-AC--AATT-TT--AAAAACGTC-AAG-GGCCGT----GGTTCTCAGTGCGTCTGGTTTTCACA--GAGN-GAAGAGTTGA-TTTTTCTAA--GAGAT-GGTTGTA----TGTACTAGTATAGTCC-TCGTAAATAAATCTTAATGCTCGTTC-TTGAATTT--CT--CAATTTNTTTT---GCATTTTTGTTCGCTGCAAAGGGGCCAAAACCTAGAG-GGA------C-------GNTAC-AC--CTATAAAGTTC-GACATNA----TGA------TAGAATGGTTAATTTACCTAACCTACAGAGATGTTTTCG-TACA--CGTTTTAGTACATTTAATTGGCG
Reference ( family-2863 ) : CAAAGCATATAAAGCTAAA-GAGTA--T---CAC-TGAAAATAATA--CTAGGAAAA-ATATANN----TAGAAGGATAGTAAAAGA--AC--GCAAAATTAT-AAA-A--G---T------T--AAATAAA---CTGATT-ACAAAGGAGTANAAA--A----AGACAGAGTA-GGCCAAAG--G-TGTATAAA-A-T-AT-AAA--AAAGAAA---G-CTTT--AACTAA-TTGANTTAGC-AT-CAAA-CTTGTCGTGGGGTTGGGCCAATCCC--TACCTCCACCAC-AT-----CATGCTAAAG-AANGAAAAGA-AAAT-A------AGATANATT-A-CAAGCAAACAA-A--ACTAAAATAAAG----CTTTACAGAATAAAGC-GGTA-CAGGTAGAG-CAGATG-AAA--GGTTTG-A-AAATAN----C------------AAAAA--GCAAG-AAAA-GACT-TGAACTA---AAAT-GNAAA-----A---AGNAAACT----------CAAAA-GAAAT-------GCAACTCATTCAG-CCATGCA------CCTCCACGCTGTG-TACTC-ACAA-GAGCTG-CAT-CTGCAGTCATCCCCCT---TCCAGGTA-GCAATAAAAGCCCTAAATTGGTTGAAGGTTGA-AAATTTCCTT-A-CAT----GNT-TAGGTAGTGAGTTCCACAGCG-----TGGC-GGCTACGT-AGCTNA-ACGACT----------GTTTNCC----A-TACNNA-----GTA-GTTCTTG-G-TCTAGGT--AGGTCC--AGTGTT-TTTGGTACC---TGAAATT-------GTTNCTAGAGTTTC---TCAAT-TGTACCAGGTCG-TGCAGA-AACAA-TGGA-C-T-TTGTT-TGT-TG-AC--AATT-T---AAAAACNTN-AAG-GGCCGT----GGCTCTCAGTGCGTCCGGTTTTCACA--GAGN-GAAGANTTGA-TTTTTCTAA--GAGAT-GGTTGTA----TGTACTAGTATAGTCCNTCGTAAATAAATCTTAATGCTCGTTCTTTGAATTTTCCTCGCAANTTNTTTTNCNNCATTTTTGTTCGCTGNAAAGGGGCCAAAACTTAGAGTGGAGAGAAGCAACGAGAGNTANGACATCTNTAAAGTTCGGACATNAGTGGTGACGNGNNTAGAATGGTTAATTTACCTAACCNACAGAGATGTTTTCGTTACAGCCGTTTNNGTACATTTAATTGGCG
gi|1 : CAAAGCATATATAGCTAAA-CAGTA--T---CAT-TGAAAATATTA--CTACGAAAA-GTATCCT----TAGAAATATAGTTAAAGA--AC--ACAAAATTCT-AAA---------------T--AAA-AAA---CTGATT-GCAAGGGAGTAAAGA--A----AGACAAAGTAAGGACAACG--GATATATATATA-T-AT-AAATTAAAAAGATTGA-CTTT--AACTAAATTGACTTAGC-AT-CAAA-CTTGGCGTGGCGTTGGACCAATCCT--TACCTCCACCAC-ATG----CATGCTAAGG-AATGAAAAGA-AAAT-A------AGATACATT-A-CAAGCAAACGA-A--ACTAAAATAAAG----CTTTACAGAACAAAGC-------AGGCAGAA-AAGATG-AAA--GGTTTG-G-AAATAA----C------------AAAAA--GCAAG-AAAATGCCTATGAACTA---AAATTGAAAA-----A---AGGAAACT----------CAAAA-GAAA--------GCAACTCATTCAG-CCATGCA------CCTCCACACTGTG-TGCTTGACAA-GAGCTG-CAT-CTGCAGTTATCCGCCT---TCCAGGTG-GCAATAAAAGCCCTAAATCGATTGAAGGTTGA-GCATTTCCTC-A-AAT----GAT-TTGGTAAGGAGTTCCACAACG-----TGGC-GGCTACAT-AGCCGA-ATGACT----------GTTTTCC----A-TACCTA-----GTA-GTTCTTG-G-TTTAGGT--AAGTCC--AGGGTCATTTGGTACC---TTAAATT-------GTTCTTAGAATTTC---TCAAT-TGTACCAGATCT-TGTAGA-AACAA-TGGA-C-T-TTGTT-TGT-TG-AC--GATT-T---AAAAACGTC-AAG-AGTCAT----GGTTTTCA-TGCGTTTGGTTTTCAAA--GAGG-GAAGGTTTGA-TTTTTCTAA--GAGAT-GGTTGTA----AGTACTGATATGGTCC-TCGTATATAAATCTTAATGCTAGTTC-TTGAATTT--CT--CAATTTA------AAAAAAAATGTTCGCTGCAAAGGTGCCAAA--CTAAAG------------------GATATTAC--CTA-AAAGTTT--ACATCA-------------TAAAAT----ACTTTACCCAACCTACAAAGATGGTTTCG-TACA--TGTTTTAGTACATTTAATTGGCG
gi|10 : GGGTTGGGCCAATCCC--TACCTCCACCAC-ATGTATACATGC----G-AACGAAAAGAGAAAT-A-------GATACAAT-A-CAAGCAAATAG-A--ACTAAAATAAAG----TTTTACAGAATAAAGC---T----GGTAGAG-CAGATG-A
gi|12 : -AT-CAAAACTTGTCGTGGGGTTGGGTCAATCCC--TA-CTCCAC-----------TATGCTAAAG-GAAGAAAAGA-AAAT-A------AGATAC--T-A-CAA
gi|13 : taaaTCCACTATGAT-----AAGCCTAAGG-GAAGAAAAGA-AAAT-A------AGATA
gi|14 : cccagTAGC-AT-CAAAACTTGTCGTGGGGTGGGGTCAATGCCATTACCTCCActataa
gi|15 : --GAGT-GAAGAGTTGA-TTTTTCTAA--GAGAT-GGTTGTA----TGTACT
gi|2 : AAA-AATAAAAAAAGAAAT-ACTTTT-AATTAAATTGA-CAAGCAAACAG-A--ACTGAAA-AAAG----CTTTACAGAATAAAGCTGGTA-CATGTAGAG-CAGATG-AAA--GGTTTG-A-GAATAT----C------------AAAAAA-GCAAG-AAAAAGACT--GAACTA---AAGT-GAAAACAAAAACCCAGGAAGCT----------CAAAAAGAAAT-------GCAACTCATTAAGGCCATG-A------CCTCCACACTGTGACACT--ACAA-GAGCTGACAT-TTGCAGT-ATCCCCCT---TCCAGGTA-GCAATAAAAGCCCTAAAT-----GAGAGTTGAGAAATTCACTG-ATCATAAAAGCTATGAGTAGTGA---TCACAGCG-----TGG------ACGC-AGCTGAGATGAATTAGAGGTGATGTTTCAC----AATACACG-----G-A-GGTCGTGTG-TGTAGGTCTAGGTCT--AGTGTA-G--GGT-CCGGGTGAAATTATGTAGAGTTTCTAGAGTTCA---T-AATATGTACCAGATCG-TGTAGA-AACAA-TGGATC-T-TTGTT-TGT-TG-A---AATT-T---TAAAACTTCGAAG-GGCCATTTCTGG-TCCCA-TGCGTCTGGTTTTCACA--GAGT-GAAGAGTTGAATTTTTCTAAAAGAGAT-GGTTGTA----TGTACTAGTATAGTCCTTCGTAAATAAATCTTAATGCTCGTTC-TTGAATTT--CTCGCAATTTTTTTT---GCATTTTTGTTCGCTGAAAA--GGCTAAAAC-TAGA--GGAGAGAAGTAACGAGAATTACGACATCTATAAA-----GACATAAGTGGTGAC---------ATGGTTAATTTACCTAACCTACAGAGATGTTTTC--TACA-TCGTTTTAGTACATTTAATTGGCG
gi|3 : AAAA-AAAAAAAAGG-AAAT-ACTTTATAATTAAATTGA-CAAGCAAACAG-A---CTGAAA-AAAGATGTCTTTACAGA-TAAAGCTGGTA-CATGTAGAG-CAGATG-AAAAAGGTGTGTATAGATGAGGTGC------------GAAAGTGGCA-G-AAAA--ACT--GAACTA---AAA--GGAAA-----A---CAAAAACCAGTGTGAAGCCAAAA-GAAATTGTGTCTGTAGCTCATTCAG-CCATGCAGTCGGGCTTCCACACTGTG-TACTCTACAAAGAGCTG-CATTCTGCAGTTATCCCCCT---TCCAGGTACGCAATAAAAGCCCTAAATTGATTGAAG--TGG-AAATTTCCCTCA-CAT----GAT-TAGGTAGAGAGTTC-ACAG-G-----TGGCAGGCTGCATTACCTGA-TGGACT----------GTTTTCCGATGA-TGCGCGTGAGTGTATGTCGTTG-GGTCTAGGT--AG-TCC--AGTCTT-TTTGGTACC---TAAAAGT-------GATATTAGAGTTTCCGGTCGAG-TG-AATAGTTCGGTGTAGA-GACGAGTGAG-CGTGTTGTTGTGTGTGTGC--AATT-TTTTAAAACTGCG-AGG-GGCCAT----GGTTCTCAGTGCGTC-GGTTTTCACA--GAGATGATGAGTTGA-TTTT-CTAA--GAGATAGGTTGTAGTGTTGTACTAGTATAGTCCATCGTAAATAAATCTTAATGCTCGTTCTTTGAATTTTCTT--CAAATTGTTTTTTTGCATTTTTGTTCGCTGCAAAAGGGCC-AAACTTAGAGTGGA------C-------GGTA--AC----TTAAAATTCGGACATTA----TAAAGAATGTAGAATGGTTAATTTACCTAACCGACAGAGA-GTTTTCGTTACAG-CGTTTATGTACA-TTAATTGGCGagctgctttctgcaaatgcatatctgacgatat
gi|4 : AATGAT-AAATA--G---TAA----TCAAAATAAATAGCAGTTT-ACAAAAGAGTTTAGA--ATTTTAT-CAAAGCAAGGCCAAAA----TGTATGAA-A-TTAT-AGA--CAAGCA--------TT--A------------TA-C-AT-C-----TTGTCATGGGGTTGGGTCAATCCC--TGCC---ACCAC-A-------ACGCTAAAATAAAGAAAAGA-GAACGA------AAAT-TATT-A--AGGCAAACAATA--AATAAAATAAAG----CGTT-CA-ATTAAAAT-T-TAGCAG-TAAAG-CAGATG-AAG--GGCC-G-A-GAATCTG---C------------ATAAA--GCAAG-AAAA-AAGG-T-AACTA---AGAC---------------AGTAAATT----------AAAAA-GA--T-------G-GATTTATTCAG-CCATGCA------CCTCCACGCTGTG-TTCTC-GAAG-GAGTTG-CAT-CTGCAGCCCCCCCCCCCCCTCCAAGTG-GTAATGAATGACCTAAGTTGGTTGAAGGTGGA-AATTTCCCTT-A-CAT----GGT-TAGGTAATGAGTTCCACAGCGTGGGCTGGC-GGCTACAT-AGGTAA-ACGACT----------GTTTACC----A-TACCTA-----GTA-GTTCTTG-G-TCCAGGT--AGTTCCAAAGT-TT-TTTAGTATC---TGAAATT-------ATAGTTAGAATTTC---TTATC-TGTACCAAGTTT-TGCAGA-AACAA-AACA-C-C-TAGTT-T
gi|5 : tgatCAAAGCATATAA-GCTAAAAGAGCAGAT---CAC-TGAAAATAATA--CCAGGAAAA-ATATAATATCATAGAAAGATAGTAAAAGAGAAC--GCAAAGTTAT-AAA-ATAG---TATGAAAT--AAATAAA---CTGATTTACAAAGGAGTAAAAA--TT---AGACAGAGT--GAACAAAGTGG-TATATAAA-AAT-AT-AAA--AAAGAAA---GACTTTTAAACTAA-TTGTATTAGC-ATGCAAG-AT----GTGGG-TTGTGCCAATACC--GACCTCCACCAA-AT------ATGC-AAAG-AAA-AGTAGA-AAAT-A-------GATAAAAT---CAAGCACTCAA-A--GCTAAAA----------------------GGC-GTT-----GTAGAGGCAGATG-AAA--GGTTTG-A-AAATAT----CGCAAGAAAGAAAGAAAA--GCAAG-AAAATGAC--TGAACTA---AAAT-a
gi|6 : caatgcaaaaaccatgatacatatttacacatctaattatgaataaataataatattaaagaaatttcacatattcaacagaatgaaaagaattgacaagatacataggcattttaagtaCAAAGCATATAAAGCTAAAAGAGTA--T---CAC-TGAAAAAAAAAAACTAGGAAAATATATAAC----TAGAAG-ATAGTAAAAAA--ACCCGCAAAATTAT-AAA-A--AGTAT------TCAAAATAAATAACTGACT-CCAAAGGAGTAGAAATTA----AGACAGAGTA-GGCCAA----G-TGTATAAA-A-A-ATAAAA--AAAGAAAT--A-CTTT-----TAA-TTAAATTGACAAG-CAAA-Caa
gi|6 : ggaagcagataaattaaaagcaattcacaagcattttaaatacaataTAAAA-AATAAAAAAAGAAAT-ACTTTT-AATTAAATTGA-CAAGCAAACAG-AG-ACTGAAAAAAAG----CTTTACAGAATAAAGCTGGTA-CATGTAGAG-CAGATG-AAA--GGTTTG-A-GAATAT----C------------AAAAA--GCAAGAAAAA-GAC--TGAACTA---agagactgaaaaaaagctttacagaataaagctggtacatgtagagcagatgaaaggtttgagaatatcaaaaagcaagaaaaagactgaacta
gi|7 : ggaagcagataaattaaaagcaattcacaagcattttaaatacaatacaaagcatataaagctaaaagagtatcactgaaaaaaaaaaactaggaaaatatataactagaagatagtaaaaaaacccgcaaaattataaaaagtattcaaaataaataactgactccaaaggagtagaaattaagacagagtaggccaagtgtaTAAA-GAGTA--TATTCAAATAAAAATAATA--CTAGGAAAA-GTATAGAGT--TTGAAGGATAGTAAAAGA--AC--GCATAAACATTAAA-A--G---TAT----T--AAATTAAT--CTGATT-ATTAGGGAGTTTAAA--A----TGACAGAGTAAGGCCAAAGT-G-TGTGTAAA---------------------------------CAGA-TTGATTTAGC-AT-CAAAACTT-----GGCGTGGGGT-------------------------------TGGTAAAG-GACAGAAAGA-AA-T-A------GAGTAG-CT-A-CAAGCAAACAC-A--ACCAAAAT-AAG----TTTTATTGCACATAGCAGGTA-TAG--AATG-CAGATG-AAAG-GGTTTA-A-AAATGA----A------------TATAA--GAAGG-AAAA-GCCTGTAAAGGAAACAAAT-GTAAA-----A---AAAAAA-------------AAAA-AA
gi|8 : gctTTAGC-AT-CAA--CT----GTGGG--TGGGTCA-TCCC--TACCTCCACCAC-ATA----CATGCTAAAGGAAAGAAAAGA-GAAT-A------AGATACATT-ACCAAGCAAACAA-AATACTAAAATAAAG----CTTT--AAACCAAAGC-A-----AGGTAGAGCCAAATGAAAA--GGTTTG-A-AAATAA----C------------AAAAA---TAAG-AAAgc
gi|9 : ACCAAGTCT-TGCAGGTAACA---GGA-C-T-TTGCT-TGT-TG-ACCAAATTATTA-AAAAACCTT-AAGCGGTTG-----GGCTCTGAGTACATCTGGTATTC-CAGTGAGG-GAAGATTTAA-TT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GATAATGATAAATAGTAATCAAAATAAATAACAATTTACAAAAGAGTTTAGAATTTTAGCAAGGCAAGGCCAAAATGTATGACATTATAGACAAGCATTATACATCTTGTCATG
Unaligned ( gi|16 ): TTTTAGGAACAGAGTAAGGCCAAAGCGTATATGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 11 11 1 3333333 1 11111 1 2222 111 2222 2222222 55555555555555555555555555555555555555 3333333333 1 2222222 1 11 4444444 11 44444444444444444444 11 3333333 111 1111 555555555555555555 3333333333 1 222222 1 22 1 1 1 111 1 1 1 222222 22222 11 1 111 4444444444 11 2222 22222 1 1 1 11 11 2222 111 3333333 111111111 111 1 222222222222 11 11 1 222222 1 11 11 1 2222 2 1 1 33333 11 1 22 11111111111111111111111111111111111111111111111111111111 22 2
lowQualScore : 7 2 222222 00 33 0 2222222 0 88888 1 3 1111 777 1111 6 6 55 9999999 5 0 5 6 33333333333333333333333333333333333333 44 5 999 22 0 66 1 6666666666 1 7 11 0 3 9999999 111 2 4 55 00 1 6 9999 4 0 33 3333333 22 8 4 11 5 5 33333333333333333333 888 11 5 2222222 000 6666 777777777777777777 88 8 6666666666 6 0 2 888888 0 1 66 0 0 0 7 777 0 77 0 6 3 0 4 4 0 222222 1 1 2 6 2 55555 22 0 111 3333333333 11 1111 1 55555 3 0 0 0 0 33 6 33 2222 3 777 0 2222222 1 888888888 3 1 88 8 8 44 8 000 8 0 444444444444 33 2 00 0 666666 7 5 3 3 11 99 8 0 33 0 1111 6 3 3 22222 88 88 2 7 22 6 88888888888888888888888888888888888888888888888888888888 0 7 7 00 6 7
lowQualScore : . . ...... .. .. . ....... . ..... . . .... ... .... . . .. ....... . . . . ...................................... .. . ... .. . .. . .......... . . .. . . ....... ... . . .. .. . . .... . . .. ....... .. . . .. . . .................... ... .. . ....... ... .... .................. .. . .......... . . . ...... . . .. . . . . ... . .. . . . . . . . ...... . . . . . ..... .. . ... .......... .. .... . ..... . . . . . .. . .. .... . ... . ....... . ......... . . .. . . .. . ... . . ............ .. . .. . ...... . . . . .. .. . . .. . .... . . . ..... .. .. . . .. . ........................................................ . . . .. . .
lowQualScore : 3 5 222222 22 88 0 5555555 5 55555 5 3 7777 777 7777 7 7 00 2222222 0 1 7 3 11111111111111111111111111111111111111 88 7 111 00 1 99 4 6666666666 9 3 44 9 6 9999999 999 0 0 33 66 4 4 4444 6 1 44 8888888 22 9 4 99 0 0 44444444444444444444 888 99 0 9999999 000 8888 222222222222222222 88 0 0000000000 5 0 5 888888 0 2 55 0 0 0 0 555 0 55 8 5 0 0 0 5 0 222222 2 0 5 5 5 00000 55 0 888 8888888888 22 2222 0 00000 2 0 0 0 2 88 5 88 8888 2 555 2 5555555 0 000000000 2 4 66 0 0 88 0 000 0 0 888888888888 22 5 22 0 555555 0 0 2 2 00 00 0 8 88 0 2222 7 3 3 00000 33 33 0 3 33 7 33333333333333333333333333333333333333333333333333333333 7 3 3 00 7 3
consensus : CAAAGCATATAAAGCTAAAAGAGTA--T---CAC-TG--AAAATAATACTAGGAAAA-GTATAANNT--TAGAAAGATAGTAAAAGA--A--CGCAAAATTAT-AAA-A--GTATTCAAAATAAAT-A--CTGA-TT-ACAAAGGAGTNNAGAA---T---AGACAGAGTAAGGCCAAAGTG-TATATAAA-A-T-ATAAA--AAAGAA--AT--ACTTT--AACTAA-TTGANTTAGCAT-CAAAACTTGTCGTGGGGTTGGGTCAATCCC--TACCTCCACCAC-AT-----CATGCTAAAG-AANGAAAAGA-AAAT-A------AGATANATT-A-CAAGCAAACAG-A--ACTAAAATAAAG----CTTTACAGAATAAAGC-GGTA-CAGGTAGAG-CAGATG-AAA--GGTTTG-A-AAATAN----C------------GAA---AA--GCAAG-AAAA-GACT-TGAACTA---AAAT-G--AAAACAA--A---AG-------GAAACTCAAAA-GAAAT-------GCAACTCATTCA-GCCATGCA------CCTCCACACTGTG-TACTC-ACAA-GAGCTG-CAT-CTGCAGTTATCCCCCT---TCCAGGTG-GCAATAAAAGCCCTAAATCGATTGAAGGTNGA-AANTTCCCTCA-CATGA----T-TAGGTAGNGAGTTCCACAGCG-----TGGC-GGCTACA-TAGCTGA-ACGA----------CTGTTTT-CC----ATACNCG-----GTA-GTTCTT-G-GTCTAGG--TAGGTCC--AGTGTT-TTTGGTACC---TGAAATT-------GTTNTTAGAGTTTC---TCAAT-TGTACCAGGTC-TTGTAGA-AAC-AATGGA-C-T-TTGTT-TGT-TG-AC--AA--TT-TT-AAAAACGTC-AAG-GGCCG----TGGTTCTCAGTGCGTCTGGTTTTCACA--GAG-TGAAGAGTTG-ATTTTTCT--AAGAGAT-GGTTGTA----TGTACTAGTATAGTCC-TCGTAAATAAATCTTAATGCTCGTTC-TTGAA-TTTCT--C--AAT--TTTTTTTGCATTTTTGTTCGCTGCAAAGGGGCCAAAA-CTAGAG-G--------GACG---NT----A-ACCTATAAAGTTC-GACATNA-TGA------TAAAATGGTTAATTTACCTAACCTACAGAGATGTTTTCG-TACA-CGTTTTAGTACATTTAATTGGCG
Reference ( family-2863 ) : CAAAGCATATAAAGCTAAAAGAGTA--T---CAC-TG--AAAATAATACTAGGAAAA-GTATAATGT--TAGAAGGATAGTAAAAGA--A--CGCAAAATTAT-AAA-A--GTATTCAAAATAAAT-A--CTGA-TT-ACAAAGGAGTANAAAA---T---AGACAGAGTAAGGCCAAAGTG-TGTATAAA-A-T-ATAAA--AAAGAA--AT--ACTTT--AACTAA-TTGANTTAGCAT-CAAAACTTGTCGTGGGGTTGGGTCAATCCC--TACCTCCACCAC-AT-----CATGCTAAAG-AANGAAAAGA-AAAT-A------AGATANATT-A-CAAGCAAACAG-A--ACTAAAATAAAG----CTTTACAGAATAAAGC-GGTA-CAGGTAGAG-CAGATG-AAA--GGTTTG-A-AAATAN----C------------GAA---AA--GCAAG-AAAA-GACT-TGAACTA---AAAT-G--AAAA-----A---AG-------GAAACTCAAAA-GAAAT-------GCAACTCATTCA-GCCATGCA------CCTCCACACTGTG-TACTC-ACAA-GAGCTG-CAT-CTGCAGTTATCCCCCT---TCCAGGTG-GCAATAAAAGCCCTAAATCGATTGAAGGTTGA-AAATTCCCTTA-CATGA----T-TAGGTAGNGAGTTCCACAGCG-----TGGC-GGCTACA-TAGCTGA-ACGA----------CTGTTTT-CC----ATACNCG-----GTA-GTTCTT-G-GTCTAGG--TAGGTCC--AGTGTT-TTTGGTACC---TGAAATT-------GTTNTTAGAGTTTC---TCAAT-TGTACCAGGTC-TTGTAGA-AAC-AATGGA-C-T-TTGTT-TGT-TG-AC--AA--TT-TT-AAAAACGTC-AAG-GGCCG----TGGTTCTCAGTGCGTCTGGTTTTCACA--GAG-NGAAGAGTTG-ATTTTTCT--AAGAGAT-GGTTGTA----TGTACTAGTATAGTCC-TCGTAAATAAATCTTAATGCTCGTTC-TTGAA-TTTCT--C--AAT--TTNTTTTGCATTTTTGTTCGCTGCAAAGGGGCCAAAACCTAGAG-G--------GACG---NT----ACACCTATAAAGTTC-GACATNA-TGA------TAGAATGGTTAATTTACCTAACCTACAGAGATGTTTTCG-TACA-CGTTTTAGTACATTTAATTGGCG
gi|1 : CAAAGCATATATAGCTAAAC-AGTA--T---CAT-TG--AAAATATTACTACGAAAA-GTAT--CCT--TAGAAATATAGTTAAAGA--A--CACAAAATTCT-AAA-----TA---AAAA------A--CTGA-TT-GCAAGGGAGTAAAGAA-------AGACAAAGTAAGGACAACGGA-TATATATATA-T-ATAAATTAAAAAG--ATTGACTTT--AACTAAATTGACTTAGCAT-CAAA-CTTGGCGTGGCGTTGGACCAATCCT--TACCTCCACCAC-ATG----CATGCTAAGG-AATGAAAAGA-AAAT-A------AGATACATT-A-CAAGCAAACGA-A--ACTAAAATAAAG----CTTTACAGAACAAAGC-------AGGCAGAA-AAGATG-AAA--GGTTTG-G-AAATAA----C------------AAA---AA--GCAAG-AAAATGCCTATGAACTA---AAATTG--AAAA-----A---AG-------GAAACTCAAAA-GAAA--------GCAACTCATTCA-GCCATGCA------CCTCCACACTGTG-TGCTTGACAA-GAGCTG-CAT-CTGCAGTTATCCGCCT---TCCAGGTG-GCAATAAAAGCCCTAAATCGATTGAAGGTTGA-GCATTTCCTCA-AATGA----T-TTGGTAAGGAGTTCCACAACG-----TGGC-GGCTACA-TAGCCGA-ATGA----------CTGTTTT-CC----ATACCTA-----GTA-GTTCTT-G-GTTTAGG--TAAGTCC--AGGGTCATTTGGTACC---TTAAATT-------GTTCTTAGAATTTC---TCAAT-TGTACCAGATC-TTGTAGA-AAC-AATGGA-C-T-TTGTT-TGT-TG-AC--GA---T-TT-AAAAACGTC-AAG-AGTCA----TGGTTTTCA-TGCGTTTGGTTTTCAAA--GAG-GGAAGGTTTG-ATTTTTCT--AAGAGAT-GGTTGTA----AGTACTGATATGGTCC-TCGTATATAAATCTTAATGCTAGTTC-TTGAA-TTTCT--C--AAT--TTA---AAAAAAAATGTTCGCTGCAAAGGTGCCAAA--CTA-AA-G--------GATA---TT------ACCTA-AAAGTTT--ACATC----A------TAAAA----TACTTTACCCAACCTACAAAGATGGTTTCG-TACA-TGTTTTAGTACATTTAATTGGCG
gi|10 : GGGTTGGGCCAATCCC--TACCTCCACCAC-ATGTATACATGC----G-AACGAAAAGAGAAAT-A-------GATACAAT-A-CAAGCAAATAG-A--ACTAAAATAAAG----TTTTACAGAATAAAGC---T----GGTAGAG-CAGATG-A
gi|11 : AATGAT-AAATA--GTAATCAAAATAAAT-A--ACAATTT-ACAAAAGAGTTTAGAATTTT---AG-CAAGGCAAGGCCAAA--A-TGTATGAC-ATT-ATAGA--CAAGCATTAT--AC
gi|12 : gatAT-CAAAACTTGTCGTGGGGTTGGGTCAATCCC--TA-CTCCAC-----------TATGCTAAAG-GAAGAAAAGA-AAAT-A------AGATAC--T-A-CAAatcttgtcatg
gi|13 : taaaTCCACTATGAT-----AAGCCTAAGG-GAAGAAAAGA-AAAT-A------AGATA
gi|14 : cccagTAGCAT-CAAAACTTGTCGTGGGGTGGGGTCAATGCCATTACCTCCActataa
gi|15 : --GAG-TGAAGAGTTG-ATTTTTCT--AAGAGAT-GGTTGTA----TGTACT
gi|16 : ACAGAGTAAGGCCAAAGCG-TATAT
gi|2 : ttttaggaAAA-AATAAAAAAAGAAAT-ACTTTT-AATTAAATTGA-CAAGCAAACAG-A--ACTGAAA-AAAG----CTTTACAGAATAAAGCTGGTA-CATGTAGAG-CAGATG-AAA--GGTTTG-A-GAATAT----C------------AAA---AAA-GCAAG-AAAAAGACT--GAACTA---AAGT-G--AAAACAAAAACCCAG-------GAAGCTCAAAAAGAAAT-------GCAACTCATTAAGGCCATG-A------CCTCCACACTGTGACACT--ACAA-GAGCTGACAT-TTGCAG-TATCCCCCT---TCCAGGTA-GCAATAAAAGCCCTAAA-----TGAGAGTTGAGAAATTCACTGATCATAAAAGCTATGAGTAGTGA---TCACAGCG-----TGG------ACG-CAGCTGAGATGAATTAGAGGTGATGTTTCACA----ATACACG-----G-A-GGTCGT-GTGTGTAGGTCTAGGTCT--AGTG---TAGGGT-CCGGGTGAAATTATGTAGAGTTTCTAGAGTTCA---T-AATATGTACCAGATC-GTGTAGA-AAC-AATGGATC-T-TTGTT-TGT-TG-A---AA--TT-TT--AAAACTTCGAAG-GGCCATTTCTGG-TCCCA-TGCGTCTGGTTTTCACA--GAG-TGAAGAGTTGAATTTTTCTAAAAGAGAT-GGTTGTA----TGTACTAGTATAGTCCTTCGTAAATAAATCTTAATGCTCGTTC-TTGAA-TTTCTCGC--AAT--TTTTTTTGCATTTTTGTTCGCTGAAAA--GGCTAAAA-CTAGAG-GAGAGAAGTAACGAGAATTACGACATCTATAAA-----GACATAAGTGG------TGACATGGTTAATTTACCTAACCTACAGAGATGTTTTC--TACATCGTTTTAGTACATTTAATTGGCGgt
gi|3 : AAAA-AAAAAAAAGG-AAAT-ACTTTATAATTAAATTGA-CAAGCAAACAG-A---CTGAAA-AAAGATGTCTTTACAGA-TAAAGCTGGTA-CATGTAGAG-CAGATG-AAAAAGGTGTGTATAGATGAGGTGC------------GAA---AGTGGCA-G-AAAA--ACT--GAACTA---AAAG-G--AAAACAA--A---AACCAGTGTGAAGC-CAAAA-GAAATTGTGTCTGTAGCTCATTCA-GCCATGCAGTCGGGCTTCCACACTGTG-TACTCTACAAAGAGCTG-CATTCTGCAGTTATCCCCCT---TCCAGGTACGCAATAAAAGCCCTAAATTGATTGAA-GTGGA-AATTTCCCTCA-CATGA----T-TAGGTAGAGAGTT-CACAG-G-----TGGCAGGCTGCATTACCTGA-TGGA----------CTGTTTT-CCGATGATGCGCGTGAGTGTATGTCGTTGG-GTCTAGG--TA-GTCC--AGTCTT-TTTGGTACC---TAAAAGT-------GATATTAGAGTTTCCGGTCGAG-TG-AATAGTTCGGTGTAGA-GACGAGTGAG-CGTGTTGTTGTGTGTGTGC--AATTTT-TT-AAAACTGCG-AGG-GGCCA----TGGTTCTCAGTGCGTC-GGTTTTCACA--GAGATGATGAGTTG-A-TTTTCT--AAGAGATAGGTTGTAGTGTTGTACTAGTATAGTCCATCGTAAATAAATCTTAATGCTCGTTCTTTGAATTTTCT--TCAAATTGTTTTTTTGCATTTTTGTTCGCTGCAAAAGGGCC-AAACTTAGAGTG--------GACG---GT----A-ACT--TAAAATTCGGACATTA-TAAAGAATGTAGAATGGTTAATTTACCTAACCGACAGAGA-GTTTTCGTTACAGCGTTTATGTACA-TTAATTGGCGagctgctttctgcaaatgcatatctgacgatat
gi|4 : AATGAT-AAATA--GTAATCAAAATAAAT-AG-CAGT-TT-ACAAAAGAGTTTAGAA---TTTTAT-CAAAGCAAGGCCAAAATG-T--ATGAA-A-TTATAGA--CAAGCA---------TT--A------------TA-CAT-C-----TTGTCATGGGGTTGGGTCAATCCC--TGCC---ACCAC-A-------ACGCTAAAATAAAGAAAAGA-GAACGA------AAAT-TATT-A--AGGCAAACAATA--AATAAAATAAAG----CGTT-CA-ATTAAAAT-T-TAGCAG-TAAAG-CAGATG-AAG--GGCC-G-A-GAATCTG---C------------ATA---AA--GCAAG-AAAA-AAGG-T-AACTA---AGAC-----------------AG-------TAAATTAAAAA-GA--T-------G-GATTTATTCA-GCCATGCA------CCTCCACGCTGTG-TTCTC-GAAG-GAGTTG-CAT-CTGCAGCCCCCCCCCCCCCTCCAAGTG-GTAATGAATGACCTAAGTTGGTTGAAGGTGGA-AATTTCCCTTA-CATGG----T-TAGGTAATGAGTTCCACAGCGTGGGCTGGC-GGCTACA-TAGGTAA-ACGA----------CTGTTTA-CC----ATACCTA-----GTA-GTTCTT-G-GTCCAGG--TAGTTCCAAAGT-TT-TTTAGTATC---TGAAATT-------ATAGTTAGAATTTC---TTATC-TGTACCAAGTT-TTGCAGA-AAC-AAAACA-C-C-TAGTT-T
gi|5 : tgatCAAAGCATATAA-GCTAAAAGAGCAGAT---CAC-TG--AAAATAATACCAGGAAAA-ATATAATATCATAGAAAGATAGTAAAAGAGAA--CGCAAAGTTAT-AAA-ATAGTAT--GAAATAAAT-AAACTGA-TTTACAAAGGAGTAAAAAT---T---AGACAGAGTGAA--CAAAGTGGTATATAAA-AAT-ATAAA--AAAGAA--AG--ACTTTTAAACTAA-TTGTATTAGCATGCAAGA--TGT----GGGTTGTGCCAATACC--GACCTCCACCAA-AT------ATGC-AAAG-AAA-AGTAGA-AAAT-A-------GATAAAAT---CAAGCA----------CT----CAAAG----CT------AA-AAGGC-GTT-----GTAGAGGCAGATG-AAA--GGTTTG-A-AAATAT----CGCAAGAAAGAAAGAA---AA--GCAAG-AAAATGAC--TGAACTA---AAAT-A--Aa
gi|6 : caatgcaaaaaccatgatacatatttacacatctaattatgaataaataataatattaaagaaatttcacatattcaacagaatgaaaagaattgacaagatacataggcattttaagtaCAAAGCATATAAAGCTAAAAGAGTA--T---CAC-TGAAAAAAAAAAACTAGGAAAATATATAA--C--TAGAA-GATAGTAAAAAA--ACCCGCAAAATTATAAAA-A--GTATTCAAAATAAATAA--CTGA-CT-CCAAAGGAGTAGAAAT---TA--AGACAGAGT-AGGCC-AAGTG-TATAAAAA-A-T-A-AAA--AAAGAA--AT--ACTTT-----TAA-TTAAATTGACA
gi|6 : ggaagcagataaattaaaagcaattcacaagcattttaaatacaataTAAAA-AATAAAAAAAGAAAT-ACTTTT-AATTAAATTGA-CAAGCAAACAG-AG-ACTGAAAAAAAG----CTTTACAGAATAAAGCTGGTA-CATGTAGAG-CAGATG-AAA--GGTTTG-A-GAATAT----C------------AAA---AA--GCAAGAAAAA-GAC--TGAACTA---agcaaacagagactgaaaaaaagctttacagaataaagctggtacatgtagagcagatgaaaggtttgagaatatcaaaaagcaagaaaaagactgaacta
gi|7 : ggaagcagataaattaaaagcaattcacaagcattttaaatacaatacaaagcatataaagctaaaagagtatcactgaaaaaaaaaaactaggaaaatatataactagaagatagtaaaaaaacccgcaaaattataaaaagtattcaaaataaataactgactccaaaggagtagaaattaagacagagtaggccaagtgtaGCTTAAAGAGTA--TATTCAAATA--AAAATAATACTAGGAAAA-GTATAGAGT--TTGAAGGATAGTAAAAGA--A--CGCATAAACATTAAA-A--GTATT--AAATTAAT----CTGA-TT-ATTAGGGAGTTTAAAA---T----GACAGAGTAAGGCCAAAGTG-TGTGTAAA---------------------------------CAGA-TTGATTTAGCAT-CAAAACTTGGCGTG-----GGGT-------------------------------TGGTAAAG-GACAGAAAGA-AA-T-A------GAGTAG-CT-A-CAAGCAAACAC-A--ACCAAAAT-AAG----TTTTATTGCACATAGCAGGTA-TAG--AATG-CAGATG-AAAG-GGTTTA-A-AAAT-------------------GAATATAA--GAAGG-AAAA-GCCTGTAAAGGAAACAAAT-GTAAAAA-----A---AA-------AAAA---AAAA-G
gi|8 : TTAGCAT-CAA--CT----GTGGG--TGGGTCA-TCCC--TACCTCCACCAC-ATA----CATGCTAAAGGAAAGAAAAGA-GAAT-A------AGATACATT-ACCAAGCAAACAA-AATACTAAAATAAAG----CTTT--AAACCAAAGC-A-----AGGTAGAGCCAAATGAAAA--GGTTTG-A-AAATAA----C-------------AA---AA--ATAAG-AAAc
gi|9 : ACCAAGTC-TTGCAGGTAAC-A--GGA-C-T-TTGCT-TGT-TG-ACCAAA--TTATTAAAAAACCTT-AAGCGGTTG-----GGCTCTGAGTACATCTGGTATTC-CAGTGAG-GGAAGATTTA-ATT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 11 11 2222222 11 11 1 22 111 2222 333 11 11 111 4444444444444444444444 3333333333 1 222222 1 11 4444444 11 44444444444444444444 11 3333333 1111 3333333333333 33333333 1 222222 1 22 1 1 1 111 1 1 1 222222 22222 11 1 111 4444444444 11 2222 22222 1 1 1 11 11 2222 111 3333333 111111111 111 1 222222222222 11 11 1 222222 1 11 11 1 2222 2 1 1 555555555555555555555555555555555 1 00000000000000000000000000000000000000000000000000000000 22 2
lowQualScore : 7 2 222222 00 33 6 1111111 3 33 33 1 3 22 777 1111 6 6 22 3 222 5 0 5 44 44 3 222 5555555555555555555555 44 5 999 22 0 66 1 6666666666 1 7 11 0 3 888888 111 2 4 55 00 1 6 9999 4 0 33 3333333 22 4 4 4 11 5 5 33333333333333333333 888 11 5 2222222 0000 666 9999999999999 88 8 0 55555555 6 0 2 888888 0 1 66 0 0 0 7 777 0 77 0 6 1 0 1 0 0 222222 1 1 2 6 2 55555 22 0 111 3333333333 11 1111 1 55555 3 0 0 0 0 33 6 33 2222 3 777 0 2222222 1 888888888 3 1 88 8 8 44 8 000 8 0 444444444444 33 2 00 0 666666 7 5 3 3 11 88 8 0 33 0 1111 6 3 3 333333333333333333333333333333333 2 7 6 88888888888888888888888888888888888888888888888888888888 7 7 00 6 7
lowQualScore : . . ...... .. .. . ....... . .. .. . . .. ... .... . . .. . ... . . . .. .. . ... ...................... .. . ... .. . .. . .......... . . .. . . ...... ... . . .. .. . . .... . . .. ....... .. . . . .. . . .................... ... .. . ....... .... ... ............. .. . . ........ . . . ...... . . .. . . . . ... . .. . . . . . . . ...... . . . . . ..... .. . ... .......... .. .... . ..... . . . . . .. . .. .... . ... . ....... . ......... . . .. . . .. . ... . . ............ .. . .. . ...... . . . . .. .. . . .. . .... . . . ................................. . . . ........................................................ . . .. . .
lowQualScore : 3 5 222222 22 88 5 0000000 2 88 88 5 3 55 777 7777 7 7 00 7 555 0 1 7 44 55 2 222 1111111111111111111111 88 7 111 00 1 99 4 6666666666 9 3 44 9 6 666666 999 0 0 33 66 4 4 4444 6 1 44 8888888 22 4 4 4 99 0 0 44444444444444444444 888 99 0 9999999 8888 222 2222222222222 88 0 8 88888888 5 0 5 888888 0 2 55 0 0 0 0 555 0 55 8 5 0 0 0 2 0 222222 2 0 5 5 5 00000 55 0 888 8888888888 22 2222 0 00000 2 0 0 0 2 88 5 88 8888 2 555 2 5555555 0 000000000 2 4 66 0 0 88 0 000 0 0 888888888888 22 5 22 0 555555 0 0 2 2 00 66 0 8 88 0 2222 7 3 3 777777777777777777777777777777777 0 3 7 33333333333333333333333333333333333333333333333333333333 3 3 00 7 3
consensus : CAAAGCATATAAAGCTAAAAGAGTA--T---CAC-TG--AAAATAATACTAGGAAAAGTATANNAT--TAGAAAGATAGTAAA--AGAA--CGCAAAATTAT-AAA--AGTATTCAAAATAAAT--A-CTGA-TT-ACAAAGGAGTNNAGAATT--AGACAGAGTAAGGCCAAAGT-GTATGT-AAA-ATATAAA--AAAGAA--AT--ACTTT--AACTAA-TTGANTTAGCAT-CAAAACTTGTCGTGGGGTTGGGTCAATCCC--TACCTCCACCAC-AT-----CATGCTAAAG-AANGAAAAGA-AAAT-A------AGATANATT-A-CAAGCAAACAG-A--ACTAAAATAAAG----CTTTACAGAATAAAGC-GGTA-CAGGTAGA-G-CAGATG-AAA--GGTTTG-A-AAATAN----C------------GAA---AA--GCAAG-AAAA-GACT-TGAACTAAAAT-GAAAACAAAA-----G-------GAAACTCAAAA-GAAAT-------GCAACTCATTCA-GCCATGCA------CCTCCACACTGTG-TACTC-ACAA-GAGCTG-CAT-CTGCAGTTATCCCCCT---TCCAGGTG-GCAATAAAAGCCCTAAATCGATTGAAGGTNGA-AANTTCCCTCA-CATGA----T-TAGGTAGNGAGTTCCACAGCG-----TGGC-GGCTACA-TAGCTGA-ACGA----------CTGTTTT-CC----ATACNCG-----GTA-GTTCTT-G-GTCTAGG--TAGGTCC--AGTGTT-TTTGGTACC---TGAAATT-------GTTNTTAGAGTTTC---TCAAT-TGTACCAGGTC-TTGTAGA-AAC-AATGGA-C-T-TTGTT-TGT-TG-AC--AA--TT-TT-AAAAACGTC-AAG-GGCCG----TGGTTCTCAGTGCGTCTGGTTTTCACA--GAG-TGAAGAGTTG-ATTTTTCT--AAGAGAT-GGTTGTA----TGTACTAGTATAGTCC-TCGTAAATAAATCTTAATGCTCGTTC-TTGAA-TTTCT--C--AAT--TTTTTTTGCATTTT---------TGTTCGCTGCAAAGGGGCCAAAACTAGAG-G--------GACG----TTA----ACCTATAAAGTTC-GACATNA-TGA------TAAAATGGTTAATTTACCTAACCTACAGAGATGTTTTCG-TACA-CGTTTTAGTACATTTAATTGGCG
Reference ( family-2863 ) : CAAAGCATATAAAGCTAAAAGAGTA--T---CAC-TG--AAAATAATACTAGGAAAAGTATAANNT--TAGAAAGATAGTAAA--AGAA--CGCAAAATTAT-AAA--AGTATTCAAAATAAAT--A-CTGA-TT-ACAAAGGAGTNNAGAAT---AGACAGAGTAAGGCCAAAGT-GTATAT-AAA-ATATAAA--AAAGAA--AT--ACTTT--AACTAA-TTGANTTAGCAT-CAAAACTTGTCGTGGGGTTGGGTCAATCCC--TACCTCCACCAC-AT-----CATGCTAAAG-AANGAAAAGA-AAAT-A------AGATANATT-A-CAAGCAAACAG-A--ACTAAAATAAAG----CTTTACAGAATAAAGC-GGTA-CAGGTAGA-G-CAGATG-AAA--GGTTTG-A-AAATAN----C------------GAA---AA--GCAAG-AAAA-GACT-TGAACTAAAAT-GAAAACAAAA-----G-------GAAACTCAAAA-GAAAT-------GCAACTCATTCA-GCCATGCA------CCTCCACACTGTG-TACTC-ACAA-GAGCTG-CAT-CTGCAGTTATCCCCCT---TCCAGGTG-GCAATAAAAGCCCTAAATCGATTGAAGGTNGA-AANTTCCCTCA-CATGA----T-TAGGTAGNGAGTTCCACAGCG-----TGGC-GGCTACA-TAGCTGA-ACGA----------CTGTTTT-CC----ATACNCG-----GTA-GTTCTT-G-GTCTAGG--TAGGTCC--AGTGTT-TTTGGTACC---TGAAATT-------GTTNTTAGAGTTTC---TCAAT-TGTACCAGGTC-TTGTAGA-AAC-AATGGA-C-T-TTGTT-TGT-TG-AC--AA--TT-TT-AAAAACGTC-AAG-GGCCG----TGGTTCTCAGTGCGTCTGGTTTTCACA--GAG-TGAAGAGTTG-ATTTTTCT--AAGAGAT-GGTTGTA----TGTACTAGTATAGTCC-TCGTAAATAAATCTTAATGCTCGTTC-TTGAA-TTTCT--C--AAT--TTTTTTTGCATTTT---------TGTTCGCTGCAAAGGGGCCAAAACTAGAG-G--------GACG----NTA----ACCTATAAAGTTC-GACATNA-TGA------TAAAATGGTTAATTTACCTAACCTACAGAGATGTTTTCG-TACA-CGTTTTAGTACATTTAATTGGCG
gi|1 : CAAAGCATATATAGCTAAAC-AGTA--T---CAT-TG--AAAATATTACTACGAAAAGTAT--CCT--TAGAAATATAGTTAA--AGAA--CACAAAATTCT-AAA----TA---AAAA-------A-CTGA-TT-GCAAGGGAGTAAAGAA----AGACAAAGTAAGGACAACGG-ATATAT-ATATATATAAATTAAAAAG--ATTGACTTT--AACTAAATTGACTTAGCAT-CAAA-CTTGGCGTGGCGTTGGACCAATCCT--TACCTCCACCAC-ATG----CATGCTAAGG-AATGAAAAGA-AAAT-A------AGATACATT-A-CAAGCAAACGA-A--ACTAAAATAAAG----CTTTACAGAACAAAGC-------AGGCAGA-A-AAGATG-AAA--GGTTTG-G-AAATAA----C------------AAA---AA--GCAAG-AAAATGCCTATGAACTAAAATTGAAAA---AA-----G-------GAAACTCAAAA-GAAA--------GCAACTCATTCA-GCCATGCA------CCTCCACACTGTG-TGCTTGACAA-GAGCTG-CAT-CTGCAGTTATCCGCCT---TCCAGGTG-GCAATAAAAGCCCTAAATCGATTGAAGGTTGA-GCATTTCCTCA-AATGA----T-TTGGTAAGGAGTTCCACAACG-----TGGC-GGCTACA-TAGCCGA-ATGA----------CTGTTTT-CC----ATACCTA-----GTA-GTTCTT-G-GTTTAGG--TAAGTCC--AGGGTCATTTGGTACC---TTAAATT-------GTTCTTAGAATTTC---TCAAT-TGTACCAGATC-TTGTAGA-AAC-AATGGA-C-T-TTGTT-TGT-TG-AC--GA---T-TT-AAAAACGTC-AAG-AGTCA----TGGTTTTCA-TGCGTTTGGTTTTCAAA--GAG-GGAAGGTTTG-ATTTTTCT--AAGAGAT-GGTTGTA----AGTACTGATATGGTCC-TCGTATATAAATCTTAATGCTAGTTC-TTGAA-TTTCT--C--AA--------------TTTAAAAAAAAATGTTCGCTGCAAAGGTGCC-AAACTA-AA-G--------GATA----TT-----ACCTA-AAAGTTT--ACATC----A------TAAAA----TACTTTACCCAACCTACAAAGATGGTTTCG-TACA-TGTTTTAGTACATTTAATTGGCG
gi|10 : GGGTTGGGCCAATCCC--TACCTCCACCAC-ATGTATACATGC----G-AACGAAAAGAGAAAT-A-------GATACAAT-A-CAAGCAAATAG-A--ACTAAAATAAAG----TTTTACAGAATAAAGC---T----GGTAGA-G-CAGATG-A
gi|11 : AATGAT-AAAT-AGTAATCAAAATAAAT--A-ACAA-TTTACAAAAGAGTTTAGAATTTTAG-CAAGGCAAGGCCAAAAT-GTATG--ACA-TTATAGA--CAAGCATTAT--AC
gi|12 : gatAT-CAAAACTTGTCGTGGGGTTGGGTCAATCCC--TA-CTCCAC-----------TATGCTAAAG-GAAGAAAAGA-AAAT-A------AGATAC--T-A-CAAatcttgtcatg
gi|13 : taaaTCCACTATGAT-----AAGCCTAAGG-GAAGAAAAGA-AAAT-A------AGATA
gi|14 : cccagTAGCAT-CAAAACTTGTCGTGGGGTGGGGTCAATGCCATTACCTCCActataa
gi|15 : --GAG-TGAAGAGTTG-ATTTTTCT--AAGAGAT-GGTTGTA----TGTACT
gi|16 : ACAGAGTAAGGCCAAAGC-GTATAT-
gi|2 : ttttaggaAAA-AATAAAAAAAGAAAT-ACTTTT-AATTAAATTGA-CAAGCAAACAG-A--ACTGAAA-AAAG----CTTTACAGAATAAAGCTGGTA-CATGTAGA-G-CAGATG-AAA--GGTTTG-A-GAATAT----C------------AAA---AAA-GCAAG-AAAAAGACT--GAACTAAAGT-GAAAACAAAAACCCAG-------GAAGCTCAAAAAGAAAT-------GCAACTCATTAAGGCCATG-A------CCTCCACACTGTGACACT--ACAA-GAGCTGACAT-TTGCAG-TATCCCCCT---TCCAGGTA-GCAATAAAAGCCCTAAA-----TGAGAGTTGAGAAATTCACTGATCATAAAAGCTATGAGTAGTGA---TCACAGCG-----TGG------ACG-CAGCTGAGATGAATTAGAGGTGATGTTTCACA----ATACACG-----G-A-GGTCGT-GTGTGTAGGTCTAGGTCT--AGTG---TAGGGT-CCGGGTGAAATTATGTAGAGTTTCTAGAGTTCA---T-AATATGTACCAGATC-GTGTAGA-AAC-AATGGATC-T-TTGTT-TGT-TG-A---AA--TT-TT--AAAACTTCGAAG-GGCCATTTCTGG-TCCCA-TGCGTCTGGTTTTCACA--GAG-TGAAGAGTTGAATTTTTCTAAAAGAGAT-GGTTGTA----TGTACTAGTATAGTCCTTCGTAAATAAATCTTAATGCTCGTTC-TTGAA-TTTCTCGC--AAT--TTTTTTTGCATTTT---------TGTTCGCTGAAAA--GGCTAAAACTAGAG-GAGAGAAGTAACGAGAATTACGACATCTATAAA-----GACATAAGTGG------TGACATGGTTAATTTACCTAACCTACAGAGATGTTTTC--TACATCGTTTTAGTACATTTAATTGGCGgt
gi|3 : AAAA-AAAAAAAAGG-AAAT-ACTTTATAATTAAATTGA-CAAGCAAACAG-A---CTGAAA-AAAGATGTCTTTACAGA-TAAAGCTGGTA-CATGTAGA-G-CAGATG-AAAAAGGTGTGTATAGATGAGGTGC------------GAA---AGTGGCA-G-AAAA--ACT--GAACTAAAAG-GAAAACAAAA-----ACCAGTGTGAAGC-CAAAA-GAAATTGTGTCTGTAGCTCATTCA-GCCATGCAGTCGGGCTTCCACACTGTG-TACTCTACAAAGAGCTG-CATTCTGCAGTTATCCCCCT---TCCAGGTACGCAATAAAAGCCCTAAATTGATTGAA-GTGGA-AATTTCCCTCA-CATGA----T-TAGGTAGAGAGTT-CACAG-G-----TGGCAGGCTGCATTACCTGA-TGGA----------CTGTTTT-CCGATGATGCGCGTGAGTGTATGTCGTTGG-GTCTAGG--TA-GTCC--AGTCTT-TTTGGTACC---TAAAAGT-------GATATTAGAGTTTCCGGTCGAG-TG-AATAGTTCGGTGTAGA-GACGAGTGAG-CGTGTTGTTGTGTGTGTGC--AATTTT-TT-AAAACTGCG-AGG-GGCCA----TGGTTCTCAGTGCGTC-GGTTTTCACA--GAGATGATGAGTTG-A-TTTTCT--AAGAGATAGGTTGTAGTGTTGTACTAGTATAGTCCATCGTAAATAAATCTTAATGCTCGTTCTTTGAATTTTCT--TCAAATTGTTTTTTTGCATTTT---------TGTTCGCTGCAAAAGGGCCAAACTTAGAGTG--------GACG----GTA----ACT--TAAAATTCGGACATTA-TAAAGAATGTAGAATGGTTAATTTACCTAACCGACAGAGA-GTTTTCGTTACAGCGTTTATGTACA-TTAATTGGCGagctgctttctgcaaatgcatatctgacgatat
gi|4 : AATGAT-AAAT-AGTAATCAAAATAAAT--AGCAGT-TT-ACAAAAGAGTTTAGAATTTTAT-CAAAGCAAGGCCAAAAT-GTATG--AAA-TTATAGA--CAAGCA---------TT--A------------TA-CAT-C-----TTGTCATGGGGTTGGGTCAATCCC--TGCC---ACCAC-A-------ACGCTAAAATAAAGAAAAGA-GAACGA------AAAT-TATT-A--AGGCAAACAATA--AATAAAATAAAG----CGTT-CA-ATTAAAAT-T-TAGCAG-TAAA-G-CAGATG-AAG--GGCC-G-A-GAATCTG---C------------ATA---AA--GCAAG-AAAA-AAGG-T-AACTAAGAC----------A-----G-------TAAATTAAAAA-GA--T-------G-GATTTATTCA-GCCATGCA------CCTCCACGCTGTG-TTCTC-GAAG-GAGTTG-CAT-CTGCAGCCCCCCCCCCCCCTCCAAGTG-GTAATGAATGACCTAAGTTGGTTGAAGGTGGA-AATTTCCCTTA-CATGG----T-TAGGTAATGAGTTCCACAGCGTGGGCTGGC-GGCTACA-TAGGTAA-ACGA----------CTGTTTA-CC----ATACCTA-----GTA-GTTCTT-G-GTCCAGG--TAGTTCCAAAGT-TT-TTTAGTATC---TGAAATT-------ATAGTTAGAATTTC---TTATC-TGTACCAAGTT-TTGCAGA-AAC-AAAACA-C-C-TAGTT-T
gi|5 : tgatCAAAGCATATAA-GCTAAAAGAGCAGAT---CAC-TG--AAAATAATACCAGGAAAAATATAATATCATAGAAAGATAGTAAAAGAGAA--CGCAAAGTTAT-AAAATAGTAT--GAAATAAATAAA-CTGATTT-ACAAAGGAGTAAAAATT---AGACAGAGTGAA--CAAAGTGGTATATAAAA-ATATAAA--AAAGAA--AG--ACTTTTAAACTAA-TTGTATTAGCATGCAAGA--TGT----GGGTTGTGCCAATACC--GACCTCCACCAA-AT------ATGC-AAAG-AAA-AGTAGA-AAAT--------AGATAAAAT---CAAGC----------ACT----CAAAG----CT------AA-AAGGC-GTT-----GTAGAGG-CAGATG-AAA--GGTTTG-A-AAATAT----CGCAAGAAAGAAAGAA---AA--GCAAG-AAAATGAC--TGAACTAAAAT-AAa
gi|6 : caatgcaaaaaccatgatacatatttacacatctaattatgaataaataataatattaaagaaatttcacatattcaacagaatgaaaagaattgacaagatacataggcattttaagtaCAAAGCATATAAAGCTAAAAGAGTA--T---CAC-TGAAAAAAAAAAACTAGGAAAA-TATATAAC--TAG-AAGATAGTAAA--AAAACCCGCAAAATTATAAAA--AGTATTCAAAATAAATA-A-CTGA-CT-CCAAAGGAGTAGA-AATTA-AGACAGAGT-AGGCC-AAGT-GTATAA-AAA-ATA-AAA--AAAGAA--AT--ACTTT-----TAA-TTAAATTGACA
gi|6 : ggaagcagataaattaaaagcaattcacaagcattttaaatacaataTAAAA-AATAAAAAAAGAAAT-ACTTTT-AATTAAATTGA-CAAGCAAACAG-AG-ACTGAAAAAAAG----CTTTACAGAATAAAGCTGGTA-CATGTAGA-G-CAGATG-AAA--GGTTTG-A-GAATAT----C------------AAA---AA--GCAAGAAAAA-GAC--TGAACTAagcaaacagagactgaaaaaaagctttacagaataaagctggtacatgtagagcagatgaaaggtttgagaatatcaaaaagcaagaaaaagactgaacta
gi|7 : ggaagcagataaattaaaagcaattcacaagcattttaaatacaatacaaagcatataaagctaaaagagtatcactgaaaaaaaaaaactaggaaaatatataactagaagatagtaaaaaaacccgcaaaattataaaaagtattcaaaataaataactgactccaaaggagtagaaattaagacagagtaggccaagtgtaGCTTAAAGAGTA--TATTCAAATA--AAAATAATACTAGGAAAAGTATAGAGT--TTGAAGGATAGTAAA--AGAA--CGCATAAACATTAAA--AGTATT--AAATTAAT----CTGA-TT-ATTAGGGAGTTTAAAAT----GACAGAGTAAGGCCAAAGT-GTGTGT-AAA-------------------------------CAGA-TTGATTTAGCAT-CAAAACTTGGCGTG-----GGGT-------------------------------TGGTAAAG-GACAGAAAGA-AA-T-A------GAGTAG-CT-A-CAAGCAAACAC-A--ACCAAAAT-AAG----TTTTATTGCACATAGCAGGTA-TAG--AAT-G-CAGATG-AAAG-GGTTTA-A-AAAT-------------------GAATATAA--GAAGG-AAAA-G-CC-TG---TAAA---GGAAACAAAT-----G-------TAAA---AAAA-AAAA
gi|8 : TTAGCAT-CAA--CT----GTGGG--TGGGTCA-TCCC--TACCTCCACCAC-ATA----CATGCTAAAGGAAAGAAAAGA-GAAT-A------AGATACATT-ACCAAGCAAACAA-AATACTAAAATAAAG----CTTT--AAACCAAAGC-A-----AGGTAGA-GCCAAATGAAAA--GGTTTG-A-AAATAA----C-------------AA---AA--ATAAG-AAAaaaaagc
gi|9 : ACCAAGTC-TTGCAGGTAAC-A--GGA-C-T-TTGCT-TGT-TG-ACCAAA--TTATTAAAAAACCTT-AAGCGGTTG-----GGCTCTGAGTACATCTGGTATTC-CAGTGAG-GGAAGATTTA-ATT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 11 11 222222 11 11 1 22 111 2222 111111111 11 11 111 4444444444444444444444 3333333333 1 222222 1 11 4444444 11 44444444444444444444 11 3333333 1111 3333333333333 33333333 1 222222 1 22 1 1 1 111 1 1 1 222222 22222 11 1 111 4444444444 11 2222 22222 1 1 1 11 11 2222 111 3333333 111111111 111 1 222222222222 11 11 1 222222 1 11 11 1 2222 2 1 1 555555555555555555555555555555555 1 00000000000000000000000000000000000000000000000000000000 22 2
lowQualScore : 7 2 222222 00 33 6 111111 3 33 33 1 3 22 777 1111 6 6 22 9 888888888 0 5 44 44 3 222 5555555555555555555555 44 5 999 22 0 66 1 6666666666 1 7 11 0 3 888888 111 2 4 55 00 1 6 9999 4 0 33 3333333 22 4 4 4 11 5 5 33333333333333333333 888 11 5 2222222 0000 666 9999999999999 88 8 0 55555555 6 0 2 888888 0 1 66 0 0 0 7 777 0 77 0 6 1 0 1 0 0 222222 1 1 2 6 2 55555 22 0 111 3333333333 11 1111 1 55555 3 0 0 0 0 33 6 33 2222 3 777 0 2222222 1 888888888 3 1 88 8 8 44 8 000 8 0 444444444444 33 2 00 0 666666 7 5 3 3 11 88 8 0 33 0 1111 6 3 3 333333333333333333333333333333333 2 7 6 66666666666666666666666666666666666666666666666666666666 7 7 00 6 7
lowQualScore : . . ...... .. .. . ...... . .. .. . . .. ... .... . . .. . ......... . . .. .. . ... ...................... .. . ... .. . .. . .......... . . .. . . ...... ... . . .. .. . . .... . . .. ....... .. . . . .. . . .................... ... .. . ....... .... ... ............. .. . . ........ . . . ...... . . .. . . . . ... . .. . . . . . . . ...... . . . . . ..... .. . ... .......... .. .... . ..... . . . . . .. . .. .... . ... . ....... . ......... . . .. . . .. . ... . . ............ .. . .. . ...... . . . . .. .. . . .. . .... . . . ................................. . . . ........................................................ . . .. . .
lowQualScore : 3 5 222222 22 88 5 000000 2 88 88 5 3 55 777 7777 7 7 00 3 333333333 1 7 44 55 2 222 1111111111111111111111 88 7 111 00 1 99 4 6666666666 9 3 44 9 6 666666 999 0 0 33 66 4 4 4444 6 1 44 8888888 22 4 4 4 99 0 0 44444444444444444444 888 99 0 9999999 8888 222 2222222222222 88 0 8 88888888 5 0 5 888888 0 2 55 0 0 0 0 555 0 55 8 5 0 0 0 2 0 222222 2 0 5 5 5 00000 55 0 888 8888888888 22 2222 0 00000 2 0 0 0 2 88 5 88 8888 2 555 2 5555555 0 000000000 2 4 66 0 0 88 0 000 0 0 888888888888 22 5 22 0 555555 0 0 2 2 00 66 0 8 88 0 2222 7 3 3 777777777777777777777777777777777 0 3 7 33333333333333333333333333333333333333333333333333333333 3 3 00 7 3
consensus : CAAAGCATATAAAGCTAAAAGAGTA--T---CAC-TG--AAAATAATACTAGGAAAAGTATANAAT--TAGAAAGATAGTAAA--AGAA--CGCAAAATTAT-AAA--AGTATTCAAAATAAAT--A-CTGA-TT-ACAAAGGAGTNNAGAATT--AG--A-CAGAGTAAGGCCAAAGT-GTATGT-AAA-ATATAAA--AAAGAA--AT--ACTTT--AACTAA-TTGANTTAGCAT-CAAAACTTGTCGTGGGGTTGGGTCAATCCC--TACCTCCACCAC-AT-----CATGCTAAAG-AANGAAAAGA-AAAT-A------AGATANATT-A-CAAGCAAACAG-A--ACTAAAATAAAG----CTTTACAGAATAAAGC-GGTA-CAGGTAGA-G-CAGATG-AAA--GGTTTG-A-AAATAN----C------------GAA---AA--GCAAG-AAAA-GACT-TGAACTAAAAT-GAAAACAAAA-----G-------GAAACTCAAAA-GAAAT-------GCAACTCATTCA-GCCATGCA------CCTCCACACTGTG-TACTC-ACAA-GAGCTG-CAT-CTGCAGTTATCCCCCT---TCCAGGTG-GCAATAAAAGCCCTAAATCGATTGAAGGTNGA-AANTTCCCTCA-CATGA----T-TAGGTAGNGAGTTCCACAGCG-----TGGC-GGCTACA-TAGCTGA-ACGA----------CTGTTTT-CC----ATACNCG-----GTA-GTTCTT-G-GTCTAGG--TAGGTCC--AGTGTT-TTTGGTACC---TGAAATT-------GTTNTTAGAGTTTC---TCAAT-TGTACCAGGTC-TTGTAGA-AAC-AATGGA-C-T-TTGTT-TGT-TG-AC--AA--TT-TT-AAAAACGTC-AAG-GGCCG----TGGTTCTCAGTGCGTCTGGTTTTCACA--GAG-TGAAGAGTTG-ATTTTTCT--AAGAGAT-GGTTGTA----TGTACTAGTATAGTCC-TCGTAAATAAATCTTAATGCTCGTTC-TTGAA-TTTCT--C--AAT--TTTTTTTGCATTTT---------TGTTCGCTGCAAAGGGGCCAAAACTAGAG-G--------GACG----TTA----ACCTATAAAGTTC-GACATNA-TGA------TAAAATGGTTAATTTACCTAACCTACAGAGATGTTTTCG-TACA-CGTTTTAGTACATTTAATTGGCG
Reference ( family-2863 ) : CAAAGCATATAAAGCTAAAAGAGTA--T---CAC-TG--AAAATAATACTAGGAAAAGTATANNAT--TAGAAAGATAGTAAA--AGAA--CGCAAAATTAT-AAA--AGTATTCAAAATAAAT--A-CTGA-TT-ACAAAGGAGTNNAGAATT--AG--A-CAGAGTAAGGCCAAAGT-GTATGT-AAA-ATATAAA--AAAGAA--AT--ACTTT--AACTAA-TTGANTTAGCAT-CAAAACTTGTCGTGGGGTTGGGTCAATCCC--TACCTCCACCAC-AT-----CATGCTAAAG-AANGAAAAGA-AAAT-A------AGATANATT-A-CAAGCAAACAG-A--ACTAAAATAAAG----CTTTACAGAATAAAGC-GGTA-CAGGTAGA-G-CAGATG-AAA--GGTTTG-A-AAATAN----C------------GAA---AA--GCAAG-AAAA-GACT-TGAACTAAAAT-GAAAACAAAA-----G-------GAAACTCAAAA-GAAAT-------GCAACTCATTCA-GCCATGCA------CCTCCACACTGTG-TACTC-ACAA-GAGCTG-CAT-CTGCAGTTATCCCCCT---TCCAGGTG-GCAATAAAAGCCCTAAATCGATTGAAGGTNGA-AANTTCCCTCA-CATGA----T-TAGGTAGNGAGTTCCACAGCG-----TGGC-GGCTACA-TAGCTGA-ACGA----------CTGTTTT-CC----ATACNCG-----GTA-GTTCTT-G-GTCTAGG--TAGGTCC--AGTGTT-TTTGGTACC---TGAAATT-------GTTNTTAGAGTTTC---TCAAT-TGTACCAGGTC-TTGTAGA-AAC-AATGGA-C-T-TTGTT-TGT-TG-AC--AA--TT-TT-AAAAACGTC-AAG-GGCCG----TGGTTCTCAGTGCGTCTGGTTTTCACA--GAG-TGAAGAGTTG-ATTTTTCT--AAGAGAT-GGTTGTA----TGTACTAGTATAGTCC-TCGTAAATAAATCTTAATGCTCGTTC-TTGAA-TTTCT--C--AAT--TTTTTTTGCATTTT---------TGTTCGCTGCAAAGGGGCCAAAACTAGAG-G--------GACG----TTA----ACCTATAAAGTTC-GACATNA-TGA------TAAAATGGTTAATTTACCTAACCTACAGAGATGTTTTCG-TACA-CGTTTTAGTACATTTAATTGGCG
gi|1 : CAAAGCATATATAGCTAAAC-AGTA--T---CAT-TG--AAAATATTACTACGAAAAGTATCC--T--TAGAAATATAGTTAA--AGAA--CACAAAATTCT-AAA----TA---AAAA-------A-CTGA-TT-GCAAGGGAGTAAAGAA----AG--A-CAAAGTAAGGACAACGG-ATATAT-ATATATATAAATTAAAAAG--ATTGACTTT--AACTAAATTGACTTAGCAT-CAAA-CTTGGCGTGGCGTTGGACCAATCCT--TACCTCCACCAC-ATG----CATGCTAAGG-AATGAAAAGA-AAAT-A------AGATACATT-A-CAAGCAAACGA-A--ACTAAAATAAAG----CTTTACAGAACAAAGC-------AGGCAGA-A-AAGATG-AAA--GGTTTG-G-AAATAA----C------------AAA---AA--GCAAG-AAAATGCCTATGAACTAAAATTGAAAA---AA-----G-------GAAACTCAAAA-GAAA--------GCAACTCATTCA-GCCATGCA------CCTCCACACTGTG-TGCTTGACAA-GAGCTG-CAT-CTGCAGTTATCCGCCT---TCCAGGTG-GCAATAAAAGCCCTAAATCGATTGAAGGTTGA-GCATTTCCTCA-AATGA----T-TTGGTAAGGAGTTCCACAACG-----TGGC-GGCTACA-TAGCCGA-ATGA----------CTGTTTT-CC----ATACCTA-----GTA-GTTCTT-G-GTTTAGG--TAAGTCC--AGGGTCATTTGGTACC---TTAAATT-------GTTCTTAGAATTTC---TCAAT-TGTACCAGATC-TTGTAGA-AAC-AATGGA-C-T-TTGTT-TGT-TG-AC--GA---T-TT-AAAAACGTC-AAG-AGTCA----TGGTTTTCA-TGCGTTTGGTTTTCAAA--GAG-GGAAGGTTTG-ATTTTTCT--AAGAGAT-GGTTGTA----AGTACTGATATGGTCC-TCGTATATAAATCTTAATGCTAGTTC-TTGAA-TTTCT--C--AA--------------TTTAAAAAAAAATGTTCGCTGCAAAGGTGCC-AAACTA-AA-G--------GATA----TT-----ACCTA-AAAGTTT--ACATC----A------TAAAA----TACTTTACCCAACCTACAAAGATGGTTTCG-TACA-TGTTTTAGTACATTTAATTGGCG
gi|10 : GGGTTGGGCCAATCCC--TACCTCCACCAC-ATGTATACATGC----G-AACGAAAAGAGAAAT-A-------GATACAAT-A-CAAGCAAATAG-A--ACTAAAATAAAG----TTTTACAGAATAAAGC---T----GGTAGA-G-CAGATG-A
gi|11 : AATGAT-AAAT-AGTAATCAAAATAAAT--A-ACAA-TTTACAAAAGAGTTTAGAATTTTAG----CAAGGCAAGGCCAAAAT-GTATG--ACA-TTATAGA--CAAGCATTAT--AC
gi|12 : gatAT-CAAAACTTGTCGTGGGGTTGGGTCAATCCC--TA-CTCCAC-----------TATGCTAAAG-GAAGAAAAGA-AAAT-A------AGATAC--T-A-CAAatcttgtcatg
gi|13 : taaaTCCACTATGAT-----AAGCCTAAGG-GAAGAAAAGA-AAAT-A------AGATA
gi|14 : cccagTAGCAT-CAAAACTTGTCGTGGGGTGGGGTCAATGCCATTACCTCCActataa
gi|15 : --GAG-TGAAGAGTTG-ATTTTTCT--AAGAGAT-GGTTGTA----TGTACT
gi|16 : TT--AGGAA-CAGAGTAAGGCCAAAGC-GTATAT-
gi|2 : ttAAA-AATAAAAAAAGAAAT-ACTTTT-AATTAAATTGA-CAAGCAAACAG-A--ACTGAAA-AAAG----CTTTACAGAATAAAGCTGGTA-CATGTAGA-G-CAGATG-AAA--GGTTTG-A-GAATAT----C------------AAA---AAA-GCAAG-AAAAAGACT--GAACTAAAGT-GAAAACAAAAACCCAG-------GAAGCTCAAAAAGAAAT-------GCAACTCATTAAGGCCATG-A------CCTCCACACTGTGACACT--ACAA-GAGCTGACAT-TTGCAG-TATCCCCCT---TCCAGGTA-GCAATAAAAGCCCTAAA-----TGAGAGTTGAGAAATTCACTGATCATAAAAGCTATGAGTAGTGA---TCACAGCG-----TGG------ACG-CAGCTGAGATGAATTAGAGGTGATGTTTCACA----ATACACG-----G-A-GGTCGT-GTGTGTAGGTCTAGGTCT--AGTG---TAGGGT-CCGGGTGAAATTATGTAGAGTTTCTAGAGTTCA---T-AATATGTACCAGATC-GTGTAGA-AAC-AATGGATC-T-TTGTT-TGT-TG-A---AA--TT-TT--AAAACTTCGAAG-GGCCATTTCTGG-TCCCA-TGCGTCTGGTTTTCACA--GAG-TGAAGAGTTGAATTTTTCTAAAAGAGAT-GGTTGTA----TGTACTAGTATAGTCCTTCGTAAATAAATCTTAATGCTCGTTC-TTGAA-TTTCTCGC--AAT--TTTTTTTGCATTTT---------TGTTCGCTGAAAA--GGCTAAAACTAGAG-GAGAGAAGTAACGAGAATTACGACATCTATAAA-----GACATAAGTGG------TGACATGGTTAATTTACCTAACCTACAGAGATGTTTTC--TACATCGTTTTAGTACATTTAATTGGCGgt
gi|3 : AAAA-AAAAAAAAGG-AAAT-ACTTTATAATTAAATTGA-CAAGCAAACAG-A---CTGAAA-AAAGATGTCTTTACAGA-TAAAGCTGGTA-CATGTAGA-G-CAGATG-AAAAAGGTGTGTATAGATGAGGTGC------------GAA---AGTGGCA-G-AAAA--ACT--GAACTAAAAG-GAAAACAAAA-----ACCAGTGTGAAGC-CAAAA-GAAATTGTGTCTGTAGCTCATTCA-GCCATGCAGTCGGGCTTCCACACTGTG-TACTCTACAAAGAGCTG-CATTCTGCAGTTATCCCCCT---TCCAGGTACGCAATAAAAGCCCTAAATTGATTGAA-GTGGA-AATTTCCCTCA-CATGA----T-TAGGTAGAGAGTT-CACAG-G-----TGGCAGGCTGCATTACCTGA-TGGA----------CTGTTTT-CCGATGATGCGCGTGAGTGTATGTCGTTGG-GTCTAGG--TA-GTCC--AGTCTT-TTTGGTACC---TAAAAGT-------GATATTAGAGTTTCCGGTCGAG-TG-AATAGTTCGGTGTAGA-GACGAGTGAG-CGTGTTGTTGTGTGTGTGC--AATTTT-TT-AAAACTGCG-AGG-GGCCA----TGGTTCTCAGTGCGTC-GGTTTTCACA--GAGATGATGAGTTG-A-TTTTCT--AAGAGATAGGTTGTAGTGTTGTACTAGTATAGTCCATCGTAAATAAATCTTAATGCTCGTTCTTTGAATTTTCT--TCAAATTGTTTTTTTGCATTTT---------TGTTCGCTGCAAAAGGGCCAAACTTAGAGTG--------GACG----GTA----ACT--TAAAATTCGGACATTA-TAAAGAATGTAGAATGGTTAATTTACCTAACCGACAGAGA-GTTTTCGTTACAGCGTTTATGTACA-TTAATTGGCGagctgctttctgcaaatgcatatctgacgatat
gi|4 : AATGAT-AAAT-AGTAATCAAAATAAAT--AGCAGT-TT-ACAAAAGAGTTTAGAATT--TT--ATCAAAGCAAGGCCAAAAT-GTATG--AAA-TTATAGA--CAAGCA---------TT--A------------TA-CAT-C-----TTGTCATGGGGTTGGGTCAATCCC--TGCC---ACCAC-A-------ACGCTAAAATAAAGAAAAGA-GAACGA------AAAT-TATT-A--AGGCAAACAATA--AATAAAATAAAG----CGTT-CA-ATTAAAAT-T-TAGCAG-TAAA-G-CAGATG-AAG--GGCC-G-A-GAATCTG---C------------ATA---AA--GCAAG-AAAA-AAGG-T-AACTAAGAC----------A-----G-------TAAATTAAAAA-GA--T-------G-GATTTATTCA-GCCATGCA------CCTCCACGCTGTG-TTCTC-GAAG-GAGTTG-CAT-CTGCAGCCCCCCCCCCCCCTCCAAGTG-GTAATGAATGACCTAAGTTGGTTGAAGGTGGA-AATTTCCCTTA-CATGG----T-TAGGTAATGAGTTCCACAGCGTGGGCTGGC-GGCTACA-TAGGTAA-ACGA----------CTGTTTA-CC----ATACCTA-----GTA-GTTCTT-G-GTCCAGG--TAGTTCCAAAGT-TT-TTTAGTATC---TGAAATT-------ATAGTTAGAATTTC---TTATC-TGTACCAAGTT-TTGCAGA-AAC-AAAACA-C-C-TAGTT-T
gi|5 : tgatCAAAGCATATAA-GCTAAAAGAGCAGAT---CAC-TG--AAAATAATACCAGGAAAAATATAATATCATAGAAAGATAGTAAAAGAGAA--CGCAAAGTTAT-AAAATAGTAT--GAAATAAATAAA-CTGATTT-ACAAAGGAGTAAA-AATT--AG--A-CAGAGTGAA--CAAAGTGGTATATAAAA-ATATAAA--AAAGAA--AG--ACTTTTAAACTAA-TTGTATTAGCATGCAAGA--TGT----GGGTTGTGCCAATACC--GACCTCCACCAA-AT------ATGC-AAAG-AAA-AGTAGA-AAAT--------AGATAAAAT---CAAGC----------ACT----CAAAG----CT------AA-AAGGC-GTT-----GTAGAGG-CAGATG-AAA--GGTTTG-A-AAATAT----CGCAAGAAAGAAAGAA---AA--GCAAG-AAAATGAC--TGAACTAAAAT-AAa
gi|6 : caatgcaaaaaccatgatacatatttacacatctaattatgaataaataataatattaaagaaatttcacatattcaacagaatgaaaagaattgacaagatacataggcattttaagtaCAAAGCATATAAAGCTAAAAGAGTA--T---CAC-TGAAAAAAAAAAACTAGGAAAA-TATATAAC--TAG-AAGATAGTAAA--AAAACCCGCAAAATTATAAAA--AGTATTCAAAATAAATA-A-CTGA-CT-CCAAAGGAGTAGA-AATTA-AG--A-CAGAGT-AGGCC-AAGT-GTATAA-AAA-ATA-AAA--AAAGAA--AT--ACTTT-----TAA-TTAAATTGACA
gi|6 : ggaagcagataaattaaaagcaattcacaagcattttaaatacaataTAAAA-AATAAAAAAAGAAAT-ACTTTT-AATTAAATTGA-CAAGCAAACAG-AG-ACTGAAAAAAAG----CTTTACAGAATAAAGCTGGTA-CATGTAGA-G-CAGATG-AAA--GGTTTG-A-GAATAT----C------------AAA---AA--GCAAGAAAAA-GAC--TGAACTAagcaaacagagactgaaaaaaagctttacagaataaagctggtacatgtagagcagatgaaaggtttgagaatatcaaaaagcaagaaaaagactgaacta
gi|7 : ggaagcagataaattaaaagcaattcacaagcattttaaatacaatacaaagcatataaagctaaaagagtatcactgaaaaaaaaaaactaggaaaatatataactagaagatagtaaaaaaacccgcaaaattataaaaagtattcaaaataaataactgactccaaaggagtagaaattaagacagagtaggccaagtgtaGCTTAAAGAGTA--TATTCAAATA--AAAATAATACTAGGAAAAGTATAGAGT--TTGAAGGATAGTAAA--AGAA--CGCATAAACATTAAA--AGTATT--AAATTAAT----CTGA-TT-ATTAGGGAGTTTAAAAT----G--A-CAGAGTAAGGCCAAAGT-GTGTGT-AAA-------------------------------CAGA-TTGATTTAGCAT-CAAAACTTGGCGTG-----GGGT-------------------------------TGGTAAAG-GACAGAAAGA-AA-T-A------GAGTAG-CT-A-CAAGCAAACAC-A--ACCAAAAT-AAG----TTTTATTGCACATAGCAGGTA-TAG--AAT-G-CAGATG-AAAG-GGTTTA-A-AAAT-------------------GAATATAA--GAAGG-AAAA-G-CC-TG---TAAA---GGAAACAAAT-----G-------TAAA---AAAA-AAAA
gi|8 : TTAGCAT-CAA--CT----GTGGG--TGGGTCA-TCCC--TACCTCCACCAC-ATA----CATGCTAAAGGAAAGAAAAGA-GAAT-A------AGATACATT-ACCAAGCAAACAA-AATACTAAAATAAAG----CTTT--AAACCAAAGC-A-----AGGTAGA-GCCAAATGAAAA--GGTTTG-A-AAATAA----C-------------AA---AA--ATAAG-AAAaaaaagc
gi|9 : ACCAAGTC-TTGCAGGTAAC-A--GGA-C-T-TTGCT-TGT-TG-ACCAAA--TTATTAAAAAACCTT-AAGCGGTTG-----GGCTCTGAGTACATCTGGTATTC-CAGTGAG-GGAAGATTTA-ATT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 11 11 222222 11 11 1 22 111 2222 111111111 11 11 111 4444444444444444444444 3333333333 1 222222 1 11 4444444 11 44444444444444444444 11 3333333 1111 3333333333333 33333333 1 222222 1 22 1 1 1 111 1 1 1 222222 22222 11 1 111 4444444444 11 2222 22222 1 1 1 11 11 2222 111 3333333 111111111 111 1 222222222222 11 11 1 222222 1 11 11 1 2222 2 1 1 555555555555555555555555555555555 1 00000000000000000000000000000000000000000000000000000000 22 2
lowQualScore : 7 2 222222 00 33 6 000000 3 33 33 1 3 22 777 1111 6 6 22 9 888888888 0 5 44 44 3 222 5555555555555555555555 44 5 999 22 0 66 1 6666666666 1 7 11 0 3 888888 111 2 4 55 00 1 6 9999 4 0 33 3333333 22 4 4 4 11 5 5 33333333333333333333 888 11 5 2222222 0000 666 9999999999999 88 8 0 55555555 6 0 2 888888 0 1 66 0 0 0 7 777 0 77 0 6 1 0 1 0 0 222222 1 1 2 6 2 55555 22 0 111 3333333333 11 1111 1 55555 3 0 0 0 0 33 6 33 2222 3 777 0 2222222 1 888888888 3 1 88 8 8 44 8 000 8 0 444444444444 33 2 00 0 666666 7 5 3 3 11 88 8 0 33 0 1111 6 3 3 333333333333333333333333333333333 2 7 6 66666666666666666666666666666666666666666666666666666666 7 7 00 6 7
lowQualScore : . . ...... .. .. . ...... . .. .. . . .. ... .... . . .. . ......... . . .. .. . ... ...................... .. . ... .. . .. . .......... . . .. . . ...... ... . . .. .. . . .... . . .. ....... .. . . . .. . . .................... ... .. . ....... .... ... ............. .. . . ........ . . . ...... . . .. . . . . ... . .. . . . . . . . ...... . . . . . ..... .. . ... .......... .. .... . ..... . . . . . .. . .. .... . ... . ....... . ......... . . .. . . .. . ... . . ............ .. . .. . ...... . . . . .. .. . . .. . .... . . . ................................. . . . ........................................................ . . .. . .
lowQualScore : 3 5 222222 22 88 5 000000 2 88 88 5 3 55 777 7777 7 7 00 3 333333333 1 7 44 55 2 222 1111111111111111111111 88 7 111 00 1 99 4 6666666666 9 3 44 9 6 666666 999 0 0 33 66 4 4 4444 6 1 44 8888888 22 4 4 4 99 0 0 44444444444444444444 888 99 0 9999999 8888 222 2222222222222 88 0 8 88888888 5 0 5 888888 0 2 55 0 0 0 0 555 0 55 8 5 0 0 0 2 0 222222 2 0 5 5 5 00000 55 0 888 8888888888 22 2222 0 00000 2 0 0 0 2 88 5 88 8888 2 555 2 5555555 0 000000000 2 4 66 0 0 88 0 000 0 0 888888888888 22 5 22 0 555555 0 0 2 2 00 66 0 8 88 0 2222 7 3 3 777777777777777777777777777777777 0 3 7 33333333333333333333333333333333333333333333333333333333 3 3 00 7 3
consensus : CAAAGCATATAAAGCTAAAAGAGTA--T---CAC-TG--AAAATAATACTAGGAAAAGTATANAAT--TAGAAAGATAGTAAA--AGAA--CGCAAAATTAT-AAA--AGTATTCAAAATAAAT--A-CTGA-TT-ACAAAGGAGTNNAGAATT--AG--A-CAGAGTAAGGCCAAAGT-GTATGT-AAA-ATATAAA--AAAGAA--AT--ACTTT--AACTAA-TTGANTTAGCAT-CAAAACTTGTCGTGGGGTTGGGTCAATCCC--TACCTCCACCAC-AT-----CATGCTAAAG-AANGAAAAGA-AAAT-A------AGATANATT-A-CAAGCAAACAG-A--ACTAAAATAAAG----CTTTACAGAATAAAGC-GGTA-CAGGTAGA-G-CAGATG-AAA--GGTTTG-A-AAATAN----C------------GAA---AA--GCAAG-AAAA-GACT-TGAACTAAAAT-GAAAACAAAA-----G-------GAAACTCAAAA-GAAAT-------GCAACTCATTCA-GCCATGCA------CCTCCACACTGTG-TACTC-ACAA-GAGCTG-CAT-CTGCAGTTATCCCCCT---TCCAGGTG-GCAATAAAAGCCCTAAATCGATTGAAGGTNGA-AANTTCCCTCA-CATGA----T-TAGGTAGNGAGTTCCACAGCG-----TGGC-GGCTACA-TAGCTGA-ACGA----------CTGTTTT-CC----ATACNCG-----GTA-GTTCTT-G-GTCTAGG--TAGGTCC--AGTGTT-TTTGGTACC---TGAAATT-------GTTNTTAGAGTTTC---TCAAT-TGTACCAGGTC-TTGTAGA-AAC-AATGGA-C-T-TTGTT-TGT-TG-AC--AA--TT-TT-AAAAACGTC-AAG-GGCCG----TGGTTCTCAGTGCGTCTGGTTTTCACA--GAG-TGAAGAGTTG-ATTTTTCT--AAGAGAT-GGTTGTA----TGTACTAGTATAGTCC-TCGTAAATAAATCTTAATGCTCGTTC-TTGAA-TTTCT--C--AAT--TTTTTTTGCATTTT---------TGTTCGCTGCAAAGGGGCCAAAACTAGAG-G--------GACG----TTA----ACCTATAAAGTTC-GACATNA-TGA------TAAAATGGTTAATTTACCTAACCTACAGAGATGTTTTCG-TACA-CGTTTTAGTACATTTAATTGGCG
Reference ( family-2863 ) : CAAAGCATATAAAGCTAAAAGAGTA--T---CAC-TG--AAAATAATACTAGGAAAAGTATANAAT--TAGAAAGATAGTAAA--AGAA--CGCAAAATTAT-AAA--AGTATTCAAAATAAAT--A-CTGA-TT-ACAAAGGAGTNNAGAATT--AG--A-CAGAGTAAGGCCAAAGT-GTATGT-AAA-ATATAAA--AAAGAA--AT--ACTTT--AACTAA-TTGANTTAGCAT-CAAAACTTGTCGTGGGGTTGGGTCAATCCC--TACCTCCACCAC-AT-----CATGCTAAAG-AANGAAAAGA-AAAT-A------AGATANATT-A-CAAGCAAACAG-A--ACTAAAATAAAG----CTTTACAGAATAAAGC-GGTA-CAGGTAGA-G-CAGATG-AAA--GGTTTG-A-AAATAN----C------------GAA---AA--GCAAG-AAAA-GACT-TGAACTAAAAT-GAAAACAAAA-----G-------GAAACTCAAAA-GAAAT-------GCAACTCATTCA-GCCATGCA------CCTCCACACTGTG-TACTC-ACAA-GAGCTG-CAT-CTGCAGTTATCCCCCT---TCCAGGTG-GCAATAAAAGCCCTAAATCGATTGAAGGTNGA-AANTTCCCTCA-CATGA----T-TAGGTAGNGAGTTCCACAGCG-----TGGC-GGCTACA-TAGCTGA-ACGA----------CTGTTTT-CC----ATACNCG-----GTA-GTTCTT-G-GTCTAGG--TAGGTCC--AGTGTT-TTTGGTACC---TGAAATT-------GTTNTTAGAGTTTC---TCAAT-TGTACCAGGTC-TTGTAGA-AAC-AATGGA-C-T-TTGTT-TGT-TG-AC--AA--TT-TT-AAAAACGTC-AAG-GGCCG----TGGTTCTCAGTGCGTCTGGTTTTCACA--GAG-TGAAGAGTTG-ATTTTTCT--AAGAGAT-GGTTGTA----TGTACTAGTATAGTCC-TCGTAAATAAATCTTAATGCTCGTTC-TTGAA-TTTCT--C--AAT--TTTTTTTGCATTTT---------TGTTCGCTGCAAAGGGGCCAAAACTAGAG-G--------GACG----TTA----ACCTATAAAGTTC-GACATNA-TGA------TAAAATGGTTAATTTACCTAACCTACAGAGATGTTTTCG-TACA-CGTTTTAGTACATTTAATTGGCG
gi|1 : CAAAGCATATATAGCTAAAC-AGTA--T---CAT-TG--AAAATATTACTACGAAAAGTATCC--T--TAGAAATATAGTTAA--AGAA--CACAAAATTCT-AAA----TA---AAAA-------A-CTGA-TT-GCAAGGGAGTAAAGAA----AG--A-CAAAGTAAGGACAACGG-ATATAT-ATATATATAAATTAAAAAG--ATTGACTTT--AACTAAATTGACTTAGCAT-CAAA-CTTGGCGTGGCGTTGGACCAATCCT--TACCTCCACCAC-ATG----CATGCTAAGG-AATGAAAAGA-AAAT-A------AGATACATT-A-CAAGCAAACGA-A--ACTAAAATAAAG----CTTTACAGAACAAAGC-------AGGCAGA-A-AAGATG-AAA--GGTTTG-G-AAATAA----C------------AAA---AA--GCAAG-AAAATGCCTATGAACTAAAATTGAAAA---AA-----G-------GAAACTCAAAA-GAAA--------GCAACTCATTCA-GCCATGCA------CCTCCACACTGTG-TGCTTGACAA-GAGCTG-CAT-CTGCAGTTATCCGCCT---TCCAGGTG-GCAATAAAAGCCCTAAATCGATTGAAGGTTGA-GCATTTCCTCA-AATGA----T-TTGGTAAGGAGTTCCACAACG-----TGGC-GGCTACA-TAGCCGA-ATGA----------CTGTTTT-CC----ATACCTA-----GTA-GTTCTT-G-GTTTAGG--TAAGTCC--AGGGTCATTTGGTACC---TTAAATT-------GTTCTTAGAATTTC---TCAAT-TGTACCAGATC-TTGTAGA-AAC-AATGGA-C-T-TTGTT-TGT-TG-AC--GA---T-TT-AAAAACGTC-AAG-AGTCA----TGGTTTTCA-TGCGTTTGGTTTTCAAA--GAG-GGAAGGTTTG-ATTTTTCT--AAGAGAT-GGTTGTA----AGTACTGATATGGTCC-TCGTATATAAATCTTAATGCTAGTTC-TTGAA-TTTCT--C--AA--------------TTTAAAAAAAAATGTTCGCTGCAAAGGTGCC-AAACTA-AA-G--------GATA----TT-----ACCTA-AAAGTTT--ACATC----A------TAAAA----TACTTTACCCAACCTACAAAGATGGTTTCG-TACA-TGTTTTAGTACATTTAATTGGCG
gi|10 : GGGTTGGGCCAATCCC--TACCTCCACCAC-ATGTATACATGC----G-AACGAAAAGAGAAAT-A-------GATACAAT-A-CAAGCAAATAG-A--ACTAAAATAAAG----TTTTACAGAATAAAGC---T----GGTAGA-G-CAGATG-A
gi|11 : AATGAT-AAAT-AGTAATCAAAATAAAT--A-ACAA-TTTACAAAAGAGTTTAGAATTTTAG----CAAGGCAAGGCCAAAAT-GTATG--ACA-TTATAGA--CAAGCATTAT--AC
gi|12 : gatAT-CAAAACTTGTCGTGGGGTTGGGTCAATCCC--TA-CTCCAC-----------TATGCTAAAG-GAAGAAAAGA-AAAT-A------AGATAC--T-A-CAAatcttgtcatg
gi|13 : taaaTCCACTATGAT-----AAGCCTAAGG-GAAGAAAAGA-AAAT-A------AGATA
gi|14 : cccagTAGCAT-CAAAACTTGTCGTGGGGTGGGGTCAATGCCATTACCTCCActataa
gi|15 : --GAG-TGAAGAGTTG-ATTTTTCT--AAGAGAT-GGTTGTA----TGTACT
gi|16 : TT--AGGAA-CAGAGTAAGGCCAAAGC-GTATAT-
gi|2 : ttAAA-AATAAAAAAAGAAAT-ACTTTT-AATTAAATTGA-CAAGCAAACAG-A--ACTGAAA-AAAG----CTTTACAGAATAAAGCTGGTA-CATGTAGA-G-CAGATG-AAA--GGTTTG-A-GAATAT----C------------AAA---AAA-GCAAG-AAAAAGACT--GAACTAAAGT-GAAAACAAAAACCCAG-------GAAGCTCAAAAAGAAAT-------GCAACTCATTAAGGCCATG-A------CCTCCACACTGTGACACT--ACAA-GAGCTGACAT-TTGCAG-TATCCCCCT---TCCAGGTA-GCAATAAAAGCCCTAAA-----TGAGAGTTGAGAAATTCACTGATCATAAAAGCTATGAGTAGTGA---TCACAGCG-----TGG------ACG-CAGCTGAGATGAATTAGAGGTGATGTTTCACA----ATACACG-----G-A-GGTCGT-GTGTGTAGGTCTAGGTCT--AGTG---TAGGGT-CCGGGTGAAATTATGTAGAGTTTCTAGAGTTCA---T-AATATGTACCAGATC-GTGTAGA-AAC-AATGGATC-T-TTGTT-TGT-TG-A---AA--TT-TT--AAAACTTCGAAG-GGCCATTTCTGG-TCCCA-TGCGTCTGGTTTTCACA--GAG-TGAAGAGTTGAATTTTTCTAAAAGAGAT-GGTTGTA----TGTACTAGTATAGTCCTTCGTAAATAAATCTTAATGCTCGTTC-TTGAA-TTTCTCGC--AAT--TTTTTTTGCATTTT---------TGTTCGCTGAAAA--GGCTAAAACTAGAG-GAGAGAAGTAACGAGAATTACGACATCTATAAA-----GACATAAGTGG------TGACATGGTTAATTTACCTAACCTACAGAGATGTTTTC--TACATCGTTTTAGTACATTTAATTGGCGgt
gi|3 : AAAA-AAAAAAAAGG-AAAT-ACTTTATAATTAAATTGA-CAAGCAAACAG-A---CTGAAA-AAAGATGTCTTTACAGA-TAAAGCTGGTA-CATGTAGA-G-CAGATG-AAAAAGGTGTGTATAGATGAGGTGC------------GAA---AGTGGCA-G-AAAA--ACT--GAACTAAAAG-GAAAACAAAA-----ACCAGTGTGAAGC-CAAAA-GAAATTGTGTCTGTAGCTCATTCA-GCCATGCAGTCGGGCTTCCACACTGTG-TACTCTACAAAGAGCTG-CATTCTGCAGTTATCCCCCT---TCCAGGTACGCAATAAAAGCCCTAAATTGATTGAA-GTGGA-AATTTCCCTCA-CATGA----T-TAGGTAGAGAGTT-CACAG-G-----TGGCAGGCTGCATTACCTGA-TGGA----------CTGTTTT-CCGATGATGCGCGTGAGTGTATGTCGTTGG-GTCTAGG--TA-GTCC--AGTCTT-TTTGGTACC---TAAAAGT-------GATATTAGAGTTTCCGGTCGAG-TG-AATAGTTCGGTGTAGA-GACGAGTGAG-CGTGTTGTTGTGTGTGTGC--AATTTT-TT-AAAACTGCG-AGG-GGCCA----TGGTTCTCAGTGCGTC-GGTTTTCACA--GAGATGATGAGTTG-A-TTTTCT--AAGAGATAGGTTGTAGTGTTGTACTAGTATAGTCCATCGTAAATAAATCTTAATGCTCGTTCTTTGAATTTTCT--TCAAATTGTTTTTTTGCATTTT---------TGTTCGCTGCAAAAGGGCCAAACTTAGAGTG--------GACG----GTA----ACT--TAAAATTCGGACATTA-TAAAGAATGTAGAATGGTTAATTTACCTAACCGACAGAGA-GTTTTCGTTACAGCGTTTATGTACA-TTAATTGGCGagctgctttctgcaaatgcatatctgacgatat
gi|4 : AATGAT-AAAT-AGTAATCAAAATAAAT--AGCAGT-TT-ACAAAAGAGTTTAGAATT--TT--ATCAAAGCAAGGCCAAAAT-GTATG--AAA-TTATAGA--CAAGCA---------TT--A------------TA-CAT-C-----TTGTCATGGGGTTGGGTCAATCCC--TGCC---ACCAC-A-------ACGCTAAAATAAAGAAAAGA-GAACGA------AAAT-TATT-A--AGGCAAACAATA--AATAAAATAAAG----CGTT-CA-ATTAAAAT-T-TAGCAG-TAAA-G-CAGATG-AAG--GGCC-G-A-GAATCTG---C------------ATA---AA--GCAAG-AAAA-AAGG-T-AACTAAGAC----------A-----G-------TAAATTAAAAA-GA--T-------G-GATTTATTCA-GCCATGCA------CCTCCACGCTGTG-TTCTC-GAAG-GAGTTG-CAT-CTGCAGCCCCCCCCCCCCCTCCAAGTG-GTAATGAATGACCTAAGTTGGTTGAAGGTGGA-AATTTCCCTTA-CATGG----T-TAGGTAATGAGTTCCACAGCGTGGGCTGGC-GGCTACA-TAGGTAA-ACGA----------CTGTTTA-CC----ATACCTA-----GTA-GTTCTT-G-GTCCAGG--TAGTTCCAAAGT-TT-TTTAGTATC---TGAAATT-------ATAGTTAGAATTTC---TTATC-TGTACCAAGTT-TTGCAGA-AAC-AAAACA-C-C-TAGTT-T
gi|5 : tgatCAAAGCATATAA-GCTAAAAGAGCAGAT---CAC-TG--AAAATAATACCAGGAAAAATATAATATCATAGAAAGATAGTAAAAGAGAA--CGCAAAGTTAT-AAAATAGTAT--GAAATAAATAAA-CTGATTT-ACAAAGGAGTAAA-AATT--AG--A-CAGAGTGAA--CAAAGTGGTATATAAAA-ATATAAA--AAAGAA--AG--ACTTTTAAACTAA-TTGTATTAGCATGCAAGA--TGT----GGGTTGTGCCAATACC--GACCTCCACCAA-AT------ATGC-AAAG-AAA-AGTAGA-AAAT--------AGATAAAAT---CAAGC----------ACT----CAAAG----CT------AA-AAGGC-GTT-----GTAGAGG-CAGATG-AAA--GGTTTG-A-AAATAT----CGCAAGAAAGAAAGAA---AA--GCAAG-AAAATGAC--TGAACTAAAAT-AAa
gi|6 : caatgcaaaaaccatgatacatatttacacatctaattatgaataaataataatattaaagaaatttcacatattcaacagaatgaaaagaattgacaagatacataggcattttaagtaCAAAGCATATAAAGCTAAAAGAGTA--T---CAC-TGAAAAAAAAAAACTAGGAAAA-TATATAAC--TAG-AAGATAGTAAA--AAAACCCGCAAAATTATAAAA--AGTATTCAAAATAAATA-A-CTGA-CT-CCAAAGGAGTAGA-AATTA-AG--A-CAGAGT-AGGCC-AAGT-GTATAA-AAA-ATA-AAA--AAAGAA--AT--ACTTT-----TAA-TTAAATTGACA
gi|6 : ggaagcagataaattaaaagcaattcacaagcattttaaatacaataTAAAA-AATAAAAAAAGAAAT-ACTTTT-AATTAAATTGA-CAAGCAAACAG-AG-ACTGAAAAAAAG----CTTTACAGAATAAAGCTGGTA-CATGTAGA-G-CAGATG-AAA--GGTTTG-A-GAATAT----C------------AAA---AA--GCAAGAAAAA-GAC--TGAACTAagcaaacagagactgaaaaaaagctttacagaataaagctggtacatgtagagcagatgaaaggtttgagaatatcaaaaagcaagaaaaagactgaacta
gi|7 : ggaagcagataaattaaaagcaattcacaagcattttaaatacaatacaaagcatataaagctaaaagagtatcactgaaaaaaaaaaactaggaaaatatataactagaagatagtaaaaaaacccgcaaaattataaaaagtattcaaaataaataactgactccaaaggagtagaaattaagacagagtaggccaagtgtaGCTTAAAGAGTA--TATTCAAATA--AAAATAATACTAGGAAAAGTATAGAGT--TTGAAGGATAGTAAA--AGAA--CGCATAAACATTAAA--AGTATT--AAATTAAT----CTGA-TT-ATTAGGGAGTTTAAAAT----G--A-CAGAGTAAGGCCAAAGT-GTGTGT-AAA-------------------------------CAGA-TTGATTTAGCAT-CAAAACTTGGCGTG-----GGGT-------------------------------TGGTAAAG-GACAGAAAGA-AA-T-A------GAGTAG-CT-A-CAAGCAAACAC-A--ACCAAAAT-AAG----TTTTATTGCACATAGCAGGTA-TAG--AAT-G-CAGATG-AAAG-GGTTTA-A-AAAT-------------------GAATATAA--GAAGG-AAAA-G-CC-TG---TAAA---GGAAACAAAT-----G-------TAAA---AAAA-AAAA
gi|8 : TTAGCAT-CAA--CT----GTGGG--TGGGTCA-TCCC--TACCTCCACCAC-ATA----CATGCTAAAGGAAAGAAAAGA-GAAT-A------AGATACATT-ACCAAGCAAACAA-AATACTAAAATAAAG----CTTT--AAACCAAAGC-A-----AGGTAGA-GCCAAATGAAAA--GGTTTG-A-AAATAA----C-------------AA---AA--ATAAG-AAAaaaaagc
gi|9 : ACCAAGTC-TTGCAGGTAAC-A--GGA-C-T-TTGCT-TGT-TG-ACCAAA--TTATTAAAAAACCTT-AAGCGGTTG-----GGCTCTGAGTACATCTGGTATTC-CAGTGAG-GGAAGATTTA-ATT
blockSeqs : A G TATT AA AA A ATATCA A AG CC G A AT ATC AAA T T TT G TAGGAA G TA T T C AAAGACTTTTAAACTAA TA G AAC TC AT C CATGTATAC T T CG G G CTTTAT CAA G C AT AT A T ATGT A AT TGGTAC GG G C A AA T T ATCGCAAGAAAGAAAG TAT TG A AGACT GTG CAA ACCAGTGT CT A TTGTGTCT C G C GTCGGG A A CT A A T T CCC C TT A T G A T AAGCTA G T G T C TGGGC CA T GAT ATTAGAGGTG CA GATG A TGAGT T T G T TC G AA CTT A GGG ATGTAGA T CGGTCGAG T A GG T G AT T GTG G G TGCAATTTT AA T CG C ATTTCT T G T A GT AT A AA A GTGT T T T TCAAATTGTTTTTTTGCATTTT A A G GAGAGAAGTAACGAGAATTACGACATCTATAAAGACATAAGTGG T T GT T T
blockSeqs : . G GAT C . G TAAC A . . G T T ATC AG . . TT G TTTAG . T T T C AAATACTTTTAA AA . AAC TC . T TGATA T G AG G . CTTTT AAT G . G G G T . A AT TGGTAC TG . . . G . . GAGGTGCG . A . AAGGT AGG CAA ACCCAG TT . T T . C . . A C . . . C . . TT G G . T . T A A G C C . C . TG . T . G . T . . . . G . TT A . . A TAATA T T G . . GT . T . . ACCAAATTA A G G . AT C G T A . T . . . . A . . CGCAATTTTTTTTGCATTTT . A G TGGACGGTAACTTAAAATTCGGACATTATAAAGAATG T . . G .
blockSeqs : G T C . . GAGT . . . T . T TTC AA . . AA A TTTAT . A A T A CATTA AT . AAC TC . C CATAC T . AG G . CTTTT AAT G . G . G C . A TT TGGTAC TG . . . . . . CTGCA . . . TGACT ATA CAA G C . T . . . . . T . . . . . . . . . G . T . T A T . . . . . . AC . A . C . . . . . . . . G . . . G TTATC . G T . . AA . C . . AAATT . C T . G . . . . . T . . . .
blockSeqs : T . . TT A . . AG . TAAGA . T A . A CAGA . . GA GC . C AAT T . TA . . . TAT . . G . A A . A AT AGGTAT TG . . . . . . ATCA . . . GACT AC . G . . G T . . . . T . . G .
blockSeqs : C . . T . . . TT . TAGA . . . . . . C T . C CA T . AA . . . AAA . . G . G T . A AC TTAGC GG . . . . . . ATCA . . . GCCT G
blockSeqs : GA . . . . . . . T T . AG . . . AAT . . C . A T . . CC GTT G . . . . . . AAC . . . ACT
blockSeqs : . . . . . TA . . . CAT . . A . A . . . T T G . . . . . . G . . .
blockSeqs : . . CA . . . GC . . . . . . . . A A G . . .
blockSeqs : . AG . . . C . .
blockSeqs : . A . . .
blockSeqCons : ATC AA** TAGA***** N* N** CAGTTA**************** AAC TGGTAC* GACT*** ATG* CAA
originalCons : CAAAGCATATAAAGCTAAAAGAGTA--T---CAC-TG--AAAATAATACTAGGAAAAGTATANAAT--TAGAAAGATAGTAAA--AGAA--CGCAAAATTAT-AAA--AGTATTCAAAATAAAT--A-CTGA-TT-ACAAAGGAGTNNAGAATT--AG--A-CAGAGTAAGGCCAAAGT-GTATGT-AAA-ATATAAA--AAAGAA--AT--ACTTT--AACTAA-TTGANTTAGCAT-CAAAACTTGTCGTGGGGTTGGGTCAATCCC--TACCTCCACCAC-AT-----CATGCTAAAG-AANGAAAAGA-AAAT-A------AGATANATT-A-CAAGCAAACAG-A--ACTAAAATAAAG----CTTTACAGAATAAAGC-GGTA-CAGGTAGA-G-CAGATG-AAA--GGTTTG-A-AAATAN----C------------GAA---AA--GCAAG-AAAA-GACT-TGAACTAAAAT-GAAAACAAAA-----G-------GAAACTCAAAA-GAAAT-------GCAACTCATTCA-GCCATGCA------CCTCCACACTGTG-TACTC-ACAA-GAGCTG-CAT-CTGCAGTTATCCCCCT---TCCAGGTG-GCAATAAAAGCCCTAAATCGATTGAAGGTNGA-AANTTCCCTCA-CATGA----T-TAGGTAGNGAGTTCCACAGCG-----TGGC-GGCTACA-TAGCTGA-ACGA----------CTGTTTT-CC----ATACNCG-----GTA-GTTCTT-G-GTCTAGG--TAGGTCC--AGTGTT-TTTGGTACC---TGAAATT-------GTTNTTAGAGTTTC---TCAAT-TGTACCAGGTC-TTGTAGA-AAC-AATGGA-C-T-TTGTT-TGT-TG-AC--AA--TT-TT-AAAAACGTC-AAG-GGCCG----TGGTTCTCAGTGCGTCTGGTTTTCACA--GAG-TGAAGAGTTG-ATTTTTCT--AAGAGAT-GGTTGTA----TGTACTAGTATAGTCC-TCGTAAATAAATCTTAATGCTCGTTC-TTGAA-TTTCT--C--AAT--TTTTTTTGCATTTT---------TGTTCGCTGCAAAGGGGCCAAAACTAGAG-G--------GACG----TTA----ACCTATAAAGTTC-GACATNA-TGA------TAAAATGGTTAATTTACCTAACCTACAGAGATGTTTTCG-TACA-CGTTTTAGTACATTTAATTGGCG
finalCons : CAAAGCATATAAAGCTAAAAGAGTA--T---CAC-TG--AAAATAATACTAGGAAAAGTATANAAT--TAGAAAGATAGTAAA--AGAA--CGCAAAATTAT-AAA--AGTAATCAAAATAAATAA--CTGA-TT-ACAAAGGAGTNNAGAATTAGA-----CAGAGTAAGGCCAAAGT-GTATGT-AAAN-TATAAAN--AAGCAGTTA----------------TTGANTTAGCAT-CAAAACTTGTCGTGGGGTTGGGTCAATCCC--TACCTCCACCAC-AT-----CATGCTAAAG-AANGAAAAGA-AAAT-A------AGATANATT-A-CAAGCAAACAG-A--ACTAAAATAAAG----CTTTACAGAATAAAGCTGGTAC-AGGTAGA-G-CAGATG-AAA--GGTTTG-A-AAATAN----C------------GAA---AA--GCAAG-AAAAGACT---GAACTAAAATG-AAAACAAAA-----G-------GAAACTCAAAA-GAAAT-------GCAACTCATTCA-GCCATGCA------CCTCCACACTGTG-TACTC-ACAA-GAGCTG-CAT-CTGCAGTTATCCCCCT---TCCAGGTG-GCAATAAAAGCCCTAAATCGATTGAAGGTNGA-AANTTCCCTCA-CATGA----T-TAGGTAGNGAGTTCCACAGCG-----TGGC-GGCTACA-TAGCTGA-ACGA----------CTGTTTT-CC----ATACNCG-----GTA-GTTCTT-G-GTCTAGG--TAGGTCC--AGTGTT-TTTGGTACC---TGAAATT-------GTTNTTAGAGTTTC---TCAAT-TGTACCAGGTC-TTGTAGA-AAC-AATGGA-C-T-TTGTT-TGT-TG-AC--AA--TT-TT-AAAAACGTC-AAG-GGCCG----TGGTTCTCAGTGCGTCTGGTTTTCACA--GAG-TGAAGAGTTG-ATTTTTCT--AAGAGAT-GGTTGTA----TGTACTAGTATAGTCC-TCGTAAATAAATCTTAATGCTCGTTC-TTGAA-TTTCT--C--AAT--TTTTTTTGCATTTT---------TGTTCGCTGCAAAGGGGCCAAAACTAGAG-G--------GACG----TTA----ACCTATAAAGTTC-GACATNA-TGA------TAAAATGGTTAATTTACCTAACCTACAGAGATGTTTTCG-TACA-CGTTTTAGTACATTTAATTGGCG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 11 11 222222 11 11 22222222222 11111111111 22222222 11 7777777777777777777777 3333333333 1 222222 1 11 3333333 11 44444444444444444444 1 111 1111 333333333333333333 1111 33333333 1 222222 1 22 1 1 1 111 1 1 1 222222 22222 11 1 111 4444444444 11 2222 22222 1 1 1 11 11 2222 111 3333333 111111111 111 1 222222222222 11 11 1 222222 1 11 11 1 2222 2 1 1 555555555555555555555555555555555 1 00000000000000000000000000000000000000000000000000000000 22 2
lowQualScore : 7 2 222222 00 33 6 000000 7 33 33 1 6 66666666666 6 6 22 9 66666666666 0 00000000 5 8 44 7 3 4444444444444444444444 3 88 5 999 22 0 66 1 6666666666 1 7 11 0 3 888888 111 2 4 4 00 7 9999 7 0 4 1111111 22 4 4 4 11 5 5 88888888888888888888 888 66 0 88 000 0000 777777777777777777 6666 0 55555555 6 0 2 888888 0 1 66 0 0 0 7 777 0 77 0 6 1 0 1 0 0 222222 1 1 2 6 2 55555 22 0 111 3333333333 11 1111 1 55555 3 0 0 0 0 33 6 33 2222 3 777 0 2222222 1 888888888 3 1 88 8 8 44 8 000 8 0 444444444444 33 2 00 0 666666 7 5 3 3 11 88 8 0 33 0 1111 6 3 3 333333333333333333333333333333333 2 7 6 66666666666666666666666666666666666666666666666666666666 7 7 00 6 7
lowQualScore : . . ...... .. .. . ...... . .. .. . . ........... . . .. . ........... . ........ . . .. . . ...................... . .. . ... .. . .. . .......... . . .. . . ...... ... . . . .. . .... . . . ....... .. . . . .. . . .................... ... .. . .. ... .... .................. .... . ........ . . . ...... . . .. . . . . ... . .. . . . . . . . ...... . . . . . ..... .. . ... .......... .. .... . ..... . . . . . .. . .. .... . ... . ....... . ......... . . .. . . .. . ... . . ............ .. . .. . ...... . . . . .. .. . . .. . .... . . . ................................. . . . ........................................................ . . .. . .
lowQualScore : 3 5 222222 22 88 5 000000 0 88 88 5 7 22222222222 7 7 00 3 33333333333 1 77777777 7 7 22 5 3 8888888888888888888888 2 00 7 111 00 1 99 4 6666666666 9 3 44 9 6 666666 999 0 0 4 66 4 4444 3 1 7 6666666 22 4 4 4 99 0 0 44444444444444444444 888 99 0 77 000 8888 444444444444444444 8888 8 88888888 5 0 5 888888 0 2 55 0 0 0 0 555 0 55 8 5 0 0 0 2 0 222222 2 0 5 5 5 00000 55 0 888 8888888888 22 2222 0 00000 2 0 0 0 2 88 5 88 8888 2 555 2 5555555 0 000000000 2 4 66 0 0 88 0 000 0 0 888888888888 22 5 22 0 555555 0 0 2 2 00 66 0 8 88 0 2222 7 3 3 777777777777777777777777777777777 0 3 7 33333333333333333333333333333333333333333333333333333333 3 3 00 7 3
consensus : CAAAGCATATAAAGCTAAAAGAGTA--T---CAC-TGAAAATAATA--CTAGGAAAAGTATANAAT--TAGAAAGATAGTAAAAGA--AC--GCAAAATTAT-AAA-A-GTANT-CGAAATAAATAA-CTGATT-ACAAAGGAGTNNAGAA--TT-AG--A-CAGAGTAAGGCCAAAG--------TG-TATGTAAAT-TATAAANAAGCA------TT-------A------TTGANTTAGCAT-CAAAACTTGTCGTGGGGTTGGGTCAATCCC--TACCTCCACCAC-AT-----CATGCTAAAG-AANGAAAAGA-AAAT-A------AGATANATT-A-CAAGCAAACAG-A--ACTAAAATAAAG----CTTTACAGAATAAAGCTGGTA-CAGGTAGA-G-CAGATG-AAA--GGTTTG-A-AAATAN----C------------GAA---AA--GCAAG-AAAA-GAC---TGAACTAAAAT-GAAAACAAA-----AG-------GAAACTC-AAAAGAAAT-------GCAACTCATTCA-GCCATGCA------CCTCCACACTGTG-TACTC-ACAA-GAGCTG-CAT-CTGCAGTTATCCCCCT---TCCAGGTG-GCAATAAAAGCCCTAAATCGATTGAAGGTNGA-AANTTCCCTCA-CATGA----T-TAGGTAGNGAGTTCCACAGCG-----TGGC-GGCTACA-TAGCTGA-ACGA----------CTGTTTT-CC----ATACNCG-----GTA-GTTCTT-G-GTCTAGG--TAGGTCC--AGTGTT-TTTGGTACC---TGAAATT-------GTTNTTAGAGTTTC---TCAAT-TGTACCAGGTC-TTGTAGA-AAC-AATGGA-C-T-TTGTT-TGT-TG-AC--AA--TT-TT-AAAAACGTC-AAG-GGCCG----TGGTTCTCAGTGCGTCTGGTTTTCACA--GAG-TGAAGAGTTG-ATTTTTCT--AAGAGAT-GGTTGTA----TGTACTAGTATAGTCC-TCGTAAATAAATCTTAATGCTCGTTC-TTGAA-TTTCT--C--AAT--TTTTTTTGCATTTT---------TGTTCGCTGCAAAGGGGCCAAAACTAGAG-G--------GACG----TTA----ACCTATAAAGTTC-GACATNA-TGA------TAAAATGGTTAATTTACCTAACCTACAGAGATGTTTTCG-TACA-CGTTTTAGTACATTTAATTGGCG
Reference ( family-2863 ) : CAAAGCATATAAAGCTAAAAGAGTA--T---CAC-TGAAAATAATA--CTAGGAAAAGTATANAAT--TAGAAAGATAGTAAAAGA--AC--GCAAAATTAT-AAA-A-GTAAT-CAAAATAAATAA-CTGATT-ACAAAGGAGTNNAGAA--TT-AG--A-CAGAGTAAGGCCAAAG--------TG-TATGTAAAN-TATAAANAAGCAG-----TT-------A------TTGANTTAGCAT-CAAAACTTGTCGTGGGGTTGGGTCAATCCC--TACCTCCACCAC-AT-----CATGCTAAAG-AANGAAAAGA-AAAT-A------AGATANATT-A-CAAGCAAACAG-A--ACTAAAATAAAG----CTTTACAGAATAAAGCTGGTA-CAGGTAGA-G-CAGATG-AAA--GGTTTG-A-AAATAN----C------------GAA---AA--GCAAG-AAAA-GAC---TGAACTAAAAT-GAAAACAAA-----AG-------GAAACTC-AAAAGAAAT-------GCAACTCATTCA-GCCATGCA------CCTCCACACTGTG-TACTC-ACAA-GAGCTG-CAT-CTGCAGTTATCCCCCT---TCCAGGTG-GCAATAAAAGCCCTAAATCGATTGAAGGTNGA-AANTTCCCTCA-CATGA----T-TAGGTAGNGAGTTCCACAGCG-----TGGC-GGCTACA-TAGCTGA-ACGA----------CTGTTTT-CC----ATACNCG-----GTA-GTTCTT-G-GTCTAGG--TAGGTCC--AGTGTT-TTTGGTACC---TGAAATT-------GTTNTTAGAGTTTC---TCAAT-TGTACCAGGTC-TTGTAGA-AAC-AATGGA-C-T-TTGTT-TGT-TG-AC--AA--TT-TT-AAAAACGTC-AAG-GGCCG----TGGTTCTCAGTGCGTCTGGTTTTCACA--GAG-TGAAGAGTTG-ATTTTTCT--AAGAGAT-GGTTGTA----TGTACTAGTATAGTCC-TCGTAAATAAATCTTAATGCTCGTTC-TTGAA-TTTCT--C--AAT--TTTTTTTGCATTTT---------TGTTCGCTGCAAAGGGGCCAAAACTAGAG-G--------GACG----TTA----ACCTATAAAGTTC-GACATNA-TGA------TAAAATGGTTAATTTACCTAACCTACAGAGATGTTTTCG-TACA-CGTTTTAGTACATTTAATTGGCG
gi|1 : CAAAGCATATATAGCTAAAC-AGTA--T---CAT-TGAAAATATTA--CTACGAAAAGTATCC--T--TAGAAATATAGTTAAAGA--AC--ACAAAATTCT-AAA--------------TAAAAAA-CTGATT-GCAAGGGAGTAAAGAA-----AG--A-CAAAGTAAGGACAACGGATATATATA-TATATAAAT-TAAAAAGATTGAC-----TTTAACTAAA------TTGACTTAGCAT-CAAA-CTTGGCGTGGCGTTGGACCAATCCT--TACCTCCACCAC-ATG----CATGCTAAGG-AATGAAAAGA-AAAT-A------AGATACATT-A-CAAGCAAACGA-A--ACTAAAATAAAG----CTTTACAGAACAAAGC-------AGGCAGA-A-AAGATG-AAA--GGTTTG-G-AAATAA----C------------AAA---AA--GCAAG-AAAA-TGCCTATGAACTAAAATTGAAAA---A-----AG-------GAAACTC-AAAAGAAA--------GCAACTCATTCA-GCCATGCA------CCTCCACACTGTG-TGCTTGACAA-GAGCTG-CAT-CTGCAGTTATCCGCCT---TCCAGGTG-GCAATAAAAGCCCTAAATCGATTGAAGGTTGA-GCATTTCCTCA-AATGA----T-TTGGTAAGGAGTTCCACAACG-----TGGC-GGCTACA-TAGCCGA-ATGA----------CTGTTTT-CC----ATACCTA-----GTA-GTTCTT-G-GTTTAGG--TAAGTCC--AGGGTCATTTGGTACC---TTAAATT-------GTTCTTAGAATTTC---TCAAT-TGTACCAGATC-TTGTAGA-AAC-AATGGA-C-T-TTGTT-TGT-TG-AC--GA---T-TT-AAAAACGTC-AAG-AGTCA----TGGTTTTCA-TGCGTTTGGTTTTCAAA--GAG-GGAAGGTTTG-ATTTTTCT--AAGAGAT-GGTTGTA----AGTACTGATATGGTCC-TCGTATATAAATCTTAATGCTAGTTC-TTGAA-TTTCT--C--AA--------------TTTAAAAAAAAATGTTCGCTGCAAAGGTGCC-AAACTA-AA-G--------GATA----TT-----ACCTA-AAAGTTT--ACATC----A------TAAAA----TACTTTACCCAACCTACAAAGATGGTTTCG-TACA-TGTTTTAGTACATTTAATTGGCG
gi|10 : GGGTTGGGCCAATCCC--TACCTCCACCAC-ATGTATACATGC----G-AACGAAAAGAGAAAT-A-------GATACAAT-A-CAAGCAAATAG-A--ACTAAAATAAAG----TTTTACAGAATAAAGCT-------GGTAGA-G-CAGATG-A
gi|11 : AATGAT-AAATA-GTAAT-CAAAATAAATAA-CAATTT-ACAAAAGAGTTTAGAATTTT-AG----CAAGGCAAGGCCAAAA--------TG-TATG-ACAT-TATAGACAAGCA------TT-------A------T
gi|12 : gatAT-CAAAACTTGTCGTGGGGTTGGGTCAATCCC--TA-CTCCAC-----------TATGCTAAAG-GAAGAAAAGA-AAAT-A------AGATAC--T-A-CAAacatcttgtcatg
gi|13 : taaaTCCACTATGAT-----AAGCCTAAGG-GAAGAAAAGA-AAAT-A------AGATA
gi|14 : cccagTAGCAT-CAAAACTTGTCGTGGGGTGGGGTCAATGCCATTACCTCCActataa
gi|15 : --GAG-TGAAGAGTTG-ATTTTTCT--AAGAGAT-GGTTGTA----TGTACT
gi|16 : --TT-AGGAA-CAGAGTAAGGCCAAAG--------CG-TATAT
gi|2 : ttAAA-AATAAAAAAAGAAAT-ACTTTT-AATTAAATTGA-CAAGCAAACAG-A--ACTGAAA-AAAG----CTTTACAGAATAAAGCTGGTA-CATGTAGA-G-CAGATG-AAA--GGTTTG-A-GAATAT----CA-----------AAA---AA--GCAAGAAAAA-GAC---TGAACTAAAGT-GAAAACAAAAACCCAG-------GAAGCTCAAAAAGAAAT-------GCAACTCATTAAGGCCATG-A------CCTCCACACTGTGACACT--ACAA-GAGCTGACAT-TTGCAG-TATCCCCCT---TCCAGGTA-GCAATAAAAGCCCTAAA-----TGAGAGTTGAGAAATTCACTGATCATAAAAGCTATGAGTAGTGA---TCACAGCG-----TGG------ACG-CAGCTGAGATGAATTAGAGGTGATGTTTCACA----ATACACG-----G-A-GGTCGT-GTGTGTAGGTCTAGGTCT--AGTG---TAGGGT-CCGGGTGAAATTATGTAGAGTTTCTAGAGTTCA---T-AATATGTACCAGATC-GTGTAGA-AAC-AATGGATC-T-TTGTT-TGT-TG-A---AA--TT-TT--AAAACTTCGAAG-GGCCATTTCTGG-TCCCA-TGCGTCTGGTTTTCACA--GAG-TGAAGAGTTGAATTTTTCTAAAAGAGAT-GGTTGTA----TGTACTAGTATAGTCCTTCGTAAATAAATCTTAATGCTCGTTC-TTGAA-TTTCTCGC--AAT--TTTTTTTGCATTTT---------TGTTCGCTGAAAA--GGCTAAAACTAGAG-GAGAGAAGTAACGAGAATTACGACATCTATAAA-----GACATAAGTGG------TGACATGGTTAATTTACCTAACCTACAGAGATGTTTTC--TACATCGTTTTAGTACATTTAATTGGCGgt
gi|3 : AAAA-AAAAAAAAGG-AAAT-ACTTTATAATTAAATTGA-CAAGCAAACAG-A---CTGAAA-AAAGATGTCTTTACAGA-TAAAGCTGGTA-CATGTAGA-G-CAGATG-AAAAAGGTGTGTATAGATGAGGTGC------------GAA---AGTGGCA-G-AAAA--AC---TGAACTAAAAG-GAAAACAAA-----AACCAGTGTGAAGC-C-AAAAGAAATTGTGTCTGTAGCTCATTCA-GCCATGCAGTCGGGCTTCCACACTGTG-TACTCTACAAAGAGCTG-CATTCTGCAGTTATCCCCCT---TCCAGGTACGCAATAAAAGCCCTAAATTGATTGAA-GTGGA-AATTTCCCTCA-CATGA----T-TAGGTAGAGAGTT-CACAG-G-----TGGCAGGCTGCATTACCTGA-TGGA----------CTGTTTT-CCGATGATGCGCGTGAGTGTATGTCGTTGG-GTCTAGG--TA-GTCC--AGTCTT-TTTGGTACC---TAAAAGT-------GATATTAGAGTTTCCGGTCGAG-TG-AATAGTTCGGTGTAGA-GACGAGTGAG-CGTGTTGTTGTGTGTGTGC--AATTTT-TT-AAAACTGCG-AGG-GGCCA----TGGTTCTCAGTGCGTC-GGTTTTCACA--GAGATGATGAGTTG-A-TTTTCT--AAGAGATAGGTTGTAGTGTTGTACTAGTATAGTCCATCGTAAATAAATCTTAATGCTCGTTCTTTGAATTTTCT--TCAAATTGTTTTTTTGCATTTT---------TGTTCGCTGCAAAAGGGCCAAACTTAGAGTG--------GACG----GTA----ACT--TAAAATTCGGACATTA-TAAAGAATGTAGAATGGTTAATTTACCTAACCGACAGAGA-GTTTTCGTTACAGCGTTTATGTACA-TTAATTGGCGagctgctttctgcaaatgcatatctgacgatat
gi|4 : AATGAT-AAATA-GTAAT-CAAAATAAATAG-CAGTTT-ACAAAAGAGTTTAGAA--TT-TT--ATCAAAGCAAGGCCAAAA--------TG-TATG-AAAT-TATAGACAAGCA------TT-------A------T-------ACAT-C-----TTGTCATGGGGTTGGGTCAATCCC--TGCC---ACCAC-A-------ACGCTAAAATAAAGAAAAGA-GAACGA------AAAT-TATT-A--AGGCAAACAATA--AATAAAATAAAG----CGTT-CA-ATTAAAATT--TAGCAG-TAAA-G-CAGATG-AAG--GGCC-G-A-GAATCTG---C------------ATA---AA--GCAAG-AAAA-AAG---GTAACTAAGAC---------------AG-------TAAATTA-AAAAGA--T-------G-GATTTATTCA-GCCATGCA------CCTCCACGCTGTG-TTCTC-GAAG-GAGTTG-CAT-CTGCAGCCCCCCCCCCCCCTCCAAGTG-GTAATGAATGACCTAAGTTGGTTGAAGGTGGA-AATTTCCCTTA-CATGG----T-TAGGTAATGAGTTCCACAGCGTGGGCTGGC-GGCTACA-TAGGTAA-ACGA----------CTGTTTA-CC----ATACCTA-----GTA-GTTCTT-G-GTCCAGG--TAGTTCCAAAGT-TT-TTTAGTATC---TGAAATT-------ATAGTTAGAATTTC---TTATC-TGTACCAAGTT-TTGCAGA-AAC-AAAACA-C-C-TAGTT-T
gi|5 : tgatCAAAGCATATAA-GCTAAAAGAGCAGAT---CAC-TGAAAATAATA--CCAGGAAAAATATAATATCATAGAAAGATAGTAAAAGAGAAC--GCAAAGTTAT-AAA-A--TAGTATGAAATAAATAAACTGATTTACAAAGGAGTAAA-AA--TT-AG--A-CAGAGTGAA--CAAAG--------TGGTATATAAAAATATAAAAAAGAAAGACTTTT-------AAACTAATTGTATTAGCATGCAAGA--TGT----GGGTTGTGCCAATACC--GACCTCCACCAA-AT------ATGC-AAAG-AAA-AGTAGA-AAAT--------AGATAAAAT---CAAGCACTCAA-A--GCTAA---AAGG----CGTT---------------------GTAGAGG-CAGATG-AAA--GGTTTG-A-AAATAT----CGCAAGAAAGAAAGAA---AA--GCAAG-AAAATGAC---TGAACTAAAAT-AAa
gi|6 : caatgcaaaaaccatgatacatatttacacatctaattatgaataaataataatattaaagaaatttcacatattcaacagaatgaaaagaattgacaagatacataggcattttaagtaCAAAGCATATAAAGCTAAAAGAGTA--T---CAC-TGAAAAAAAAAAACTAGGAAAA-TATATAAC--TAGAA-GATAGTAAAAAA--ACCCGCAAAATTAT-AAA-AAGTATT-CAAAATAAATAA-CTGACT-CCAAAGGAGTAGA-AA--TTAAG--A-CAGAGT-AGGCC-AAG--------TG-TATAAAAAA-TA-AAAAAAG
gi|6 : ggaagcagataaattaaaagcaattcacaagcattttaaatacaataTAAAA-AATAAAAAAAGAAAT-ACTTTT-AATTAAATTGA-CAAGCAAACAG-AG-ACTGAAAAAAAG----CTTTACAGAATAAAGCTGGTA-CATGTAGA-G-CAGATG-AAA--GGTTTG-A-GAATAT----C------------AAA---AA--GCAAGAAAAA-GAC---TGAACTAaaatacttttaattaaattgacaagcaaacagagactgaaaaaaagctttacagaataaagctggtacatgtagagcagatgaaaggtttgagaatatcaaaaagcaagaaaaagactgaacta
gi|7 : ggaagcagataaattaaaagcaattcacaagcattttaaatacaatacaaagcatataaagctaaaagagtatcactgaaaaaaaaaaactaggaaaatatataactagaagatagtaaaaaaacccgcaaaattataaaaagtattcaaaataaataactgactccaaaggagtagaaattaagacagagtaggccaagtgtaGCTTAAAGAGTA--TATTCAAATAAAAATAATA--CTAGGAAAAGTATAGAGT--TTGAAGGATAGTAAAAGA--AC--GCATAAACATTAAA-A-GTATT---AAATTAAT---CTGATT-ATTAGGGAGTTTAAAA--T---G--A-CAGAGTAAGGCCAAAG--------TG-TGTGTAAA------------CAG--------------A------TTGATTTAGCAT-CAAAACTTGGCGTG-----GGGT-------------------------------TGGTAAAG-GACAGAAAGA-AA-T-A------GAGTAG-CT-A-CAAGCAAACAC-A--ACCAAAAT-AAG----TTTTATTGCACATAGCAGGTA-TAG--AAT-G-CAGATG-AAAG-GGTTTA-A-AAAT-------------------GAATATAA--GAAGG-AAAA-GCC---TG---TAAA---GGAAACAAA-----TG-------TAAA----AAAAAAAA
gi|8 : TTAGCAT-CAA--CT----GTGGG--TGGGTCA-TCCC--TACCTCCACCAC-ATA----CATGCTAAAGGAAAGAAAAGA-GAAT-A------AGATACATT-ACCAAGCAAACAA-AATACTAAAATAAAG----CTTT--AAACCAAAGC----A--AGGTAGA-GCCAAATGAAAA--GGTTTG-A-AAATAA----C-------------AA---AA--ATAAG-AAAaaaaagc
gi|9 : ACCAAGTC-TTGCAGGTAAC-A--GGA-C-T-TTGCT-TGT-TG-ACCAAA--TTATTAAAAAACCTT-AAGCGGTTG-----GGCTCTGAGTACATCTGGTATTC-CAGTGAG-GGAAGATTTA-ATT