lowQualScore : 22
lowQualScore : 2 99 999999 44444 4 5555 00
lowQualScore : . .. ...... ..... . .... ..
lowQualScore : 2 77 444444 88888 8 0000 77
consensus : TTTC-TTTCC-TGC------CATCTTGAACTC---AAACACGT----AAATGAAAATGTCCCG-CAAAT
Reference ( gi|14 ) : TTTC-TTTCC-CGC------CATCTTGAACCC---AAACATGT----GAATGAAAATGTCCCA-CAAAT
gi|16 : TTTC-TTTCC-TAT------CATCTTGAACCC---AAACATGT----AAATGAAAATATCCT--CAAAT
gi|12 : TTTC-TTTCC-TGC------CATCTTGAACTC---AAACACAT----GAATGAAAATGCC
gi|18 : TCTC-TTTTC-TGC------CATCTTGAACCC---AAACACGT----GCATGAAAATGCCCC--CAAtgtccaata
gi|21 : TTTC-TTTCC-TGC------CATCTCGAACTG---AAACACGT----GAATGAAAATATCCC
gi|7 : TTTC-TTCCT-AGCTG----CATCTTGAACCC---AAACACGT----AAATGAAAATATCGCT-CAA
gi|19 : TTTA-TTTCCATGC------CATTTTGAACAC---AAACACGT----AAATGAAAATATCCcatt
gi|6 : TTTC-TTTCC-TGCTATTGCCACCTTGAACC----AAACATGT----AAATGAAAATATCTT--CAAATtca
gi|15 : TTTC-TTTTC-TGT------CATCCTGAACTC---AAGCACGA----AAATGAAAATATCCT--CAAATt
gi|9 : TTTC-TTTCC-TAC------CATCTTGAACCC---AAAC--GT----AAATCAGTGTGTCCAG-CAAGT
gi|3 : TTTC-TTTCC-TGC------CATTTTGAACTC---TAAC--GT----AAATCAGAGTGTCCCG-CCAATacttc
gi|17 : TTCC-TTTT---GT------CATCTTGAACTC---AAGCAAAT----GAATGGAAATGTCCCatttcccaac
gi|10 : TTTC-TTTCC-TGT------TATCTTGAACGT---ATACACGT----AGATAAAAATATCCT--CAAATgtcaat
gi|2 : aTTTC-TTTCC-AGC------CATTTTGAACTC---AAACGTtg
gi|4 : TTTC-TTTTA-TTC------CATCTT---------AAACACGT----GGATGAAAAaatttttttgatcagccagagtgtgccaccaatattttccaa
gi|11 : TCC-TTTCC-TGC------CATTTTTAACTC---AAACACAT----GAATGGAAATGTCTCA-CCAAaactcctccaatatttcctaagatc
gi|20 : tttcTTCATTTCC-TGC------CATCTTTGACC-----AACACGT----AAATGAAAATATCCCA-
gi|8 : TTC-TTTCC-TGC------CATCTTGGTCTC---AA--AGGT----AAATCAGAGTGTCCCG-CCAATaatt
gi|13 : TTC-TTTCC-TGC------CATTTTGAACTC---AAatttccc
gi|5 : TCTTGAACTCTGCAAACATGTACTAGAATAAAAATACCCCATCAAcgtacagtgtccgccaataatatccctac
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): TTTCTCTGTCTGCATTTTGAACTCAACGAAAATCAGAGTGTTCCGCCAATATTCCCCCAACAGTCTATATTAA
Unaligned ( gi|22 ): TTCTTCCCTGCTATTTTGAGCTCAGATATGAATCAAAATTTTC
Unaligned ( gi|23 ): CCAAAAACGGAAATGAAAATATCCTCAAATT
Alignments
lowQualScore : 1
lowQualScore : 2 2 333 2 555555 1 4 3
lowQualScore : . . ... . ...... . . .
lowQualScore : 0 0 555 0 888888 7 7 7
consensus : TTTC-TTT-C---C-TGC------CATCTTGAACTCAAACACGTAAATGAAAATGTCCCGCAAAT
Reference ( family-2861 ) : TTTC-TTT-C---C-TGC------CATCTTGAACTCAAACACGTAAATGAAAATGTCCCGCAAAT
gi|1 : TTTC-TCTGT---C-TGC-------ATTTTGAACTCA---ACGAAAATCAGAGTGTTCCGCCAAT
gi|10 : TTTC-TTT-C---C-TGT------TATCTTGAACGTATACACGTAGATAAAAATATCCT-CAAATattcccccaacagtctatattaa
gi|11 : aTCC-TTT-C---C-TGC------CATTTTTAACTCAAACACATGAATGGAAATGTCTCACCAAtg
gi|12 : tttcTTTC-TTT-C---C-TGC------CATCTTGAACTCAAACACATGAATGAAAATGCC
gi|13 : TTC-TTT-C---C-TGC------CATTTTGAACTCA---ACGTAtgtccaata
gi|14 : TTTC-TTT-C---C-CGC------CATCTTGAACCCAAACATGTGAATGAAAATGTCCCACAAATcagtgtccgccaataatatccctac
gi|15 : TTTC-TTT-T---C-TGT------CATCCTGAACTCAAGCACGAAAATGAAAATATCCT-CAAAT
gi|16 : TTTC-TTT-C---C-TAT------CATCTTGAACCCAAACATGTAAATGAAAATATCCT-CAAAT
gi|17 : TTCC-TTT-------TGT------CATCTTGAACTCAAGCAAATGAATGGAAATGTCCCGTCAAT
gi|18 : TCTC-TTT-T---C-TGC------CATCTTGAACCCAAACACGTGCATGAAAATGCCCC-CAA
gi|19 : TTTA-TTT-C---CATGC------CATTTTGAACACAAACACGTAAATGAAAATATCC
gi|2 : TTTC-TTT-C---C-AGC------CATTTTGAACTCAA--ACGTAAtca
gi|20 : TTCATTT-C---C-TGC------CATCTTTGACC--AACACGTAAATGAAAATATCC--CAAATtttttttgatcagccagagtgtgccaccaatattttccaa
gi|21 : TTTC-TTT-C---C-TGC------CATCTCGAACTGAAACACGTGAATGAAAATATCCCt
gi|3 : TTTC-TTT-C---C-TGC------CATTTTGAACTCTA--ACGTAAATCAGAGTGTCCCGCCAAT
gi|4 : TTTC-TTT-T---A-TTC------CATCTT------AAACACGTGGATGAAAAatttcccaac
gi|6 : TTTC-TTT-C---C-TGCTATTGCCACCTTGAAC-CAAACATGTAAATGAAAATATCTT-CAAATaactcctccaatatttcctaagatc
gi|7 : TTTC-TTC-CTAGC-TGC-------ATCTTGAACCCAAACACGTAAATGAAAATATCGCTCAAt
gi|8 : TTC-TTT-C---C-TGC------CATCTTGGTCTCAA--AGGTAAATCAGAGTGTCCCGCCAATcatt
gi|9 : TTTC-TTT-C---C-TAC------CATCTTGAACCCAA--ACGTAAATCAGTGTGTCCAGCAAGTatttccc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CCTTCCAAAATTCTTGAACTCTGCAAACATGTACTAGAATAAAAATACCCCATCAAGAT
Unaligned ( gi|22 ): TTCTTCCCTGCTATTTTGAGCTCAGATATGAATCAAAATTTTC
Unaligned ( gi|23 ): CCAAAAACGGAAATGAAAATATCCTCAAATT
Alignments
lowQualScore : 1
lowQualScore : 2 2 333 2 555555 1 4 3
lowQualScore : . . ... . ...... . . .
lowQualScore : 0 0 555 0 888888 7 7 7
consensus : TTTC-TTT-C---C-TGC------CATCTTGAACTCAAACACGTAAATGAAAATGTCCCGCAAAT
Reference ( family-2861 ) : TTTC-TTT-C---C-TGC------CATCTTGAACTCAAACACGTAAATGAAAATGTCCCGCAAAT
gi|1 : TTTC-TCTGT---C-TGC-------ATTTTGAACTCA---ACGAAAATCAGAGTGTTCCGCCAAT
gi|10 : TTTC-TTT-C---C-TGT------TATCTTGAACGTATACACGTAGATAAAAATATCCT-CAAATattcccccaacagtctatattaa
gi|11 : aTCC-TTT-C---C-TGC------CATTTTTAACTCAAACACATGAATGGAAATGTCTCACCAAtg
gi|12 : tttcTTTC-TTT-C---C-TGC------CATCTTGAACTCAAACACATGAATGAAAATGCC
gi|13 : TTC-TTT-C---C-TGC------CATTTTGAACTCA---ACGTAtgtccaata
gi|14 : TTTC-TTT-C---C-CGC------CATCTTGAACCCAAACATGTGAATGAAAATGTCCCACAAATcagtgtccgccaataatatccctac
gi|15 : TTTC-TTT-T---C-TGT------CATCCTGAACTCAAGCACGAAAATGAAAATATCCT-CAAAT
gi|16 : TTTC-TTT-C---C-TAT------CATCTTGAACCCAAACATGTAAATGAAAATATCCT-CAAAT
gi|17 : TTCC-TTT-------TGT------CATCTTGAACTCAAGCAAATGAATGGAAATGTCCCGTCAAT
gi|18 : TCTC-TTT-T---C-TGC------CATCTTGAACCCAAACACGTGCATGAAAATGCCCC-CAA
gi|19 : TTTA-TTT-C---CATGC------CATTTTGAACACAAACACGTAAATGAAAATATCC
gi|2 : TTTC-TTT-C---C-AGC------CATTTTGAACTCAA--ACGTAAtca
gi|20 : TTCATTT-C---C-TGC------CATCTTTGACC--AACACGTAAATGAAAATATCC--CAAATtttttttgatcagccagagtgtgccaccaatattttccaa
gi|21 : TTTC-TTT-C---C-TGC------CATCTCGAACTGAAACACGTGAATGAAAATATCCCt
gi|3 : TTTC-TTT-C---C-TGC------CATTTTGAACTCTA--ACGTAAATCAGAGTGTCCCGCCAAT
gi|4 : TTTC-TTT-T---A-TTC------CATCTT------AAACACGTGGATGAAAAatttcccaac
gi|6 : TTTC-TTT-C---C-TGCTATTGCCACCTTGAAC-CAAACATGTAAATGAAAATATCTT-CAAATaactcctccaatatttcctaagatc
gi|7 : TTTC-TTC-CTAGC-TGC-------ATCTTGAACCCAAACACGTAAATGAAAATATCGCTCAAt
gi|8 : TTC-TTT-C---C-TGC------CATCTTGGTCTCAA--AGGTAAATCAGAGTGTCCCGCCAATcatt
gi|9 : TTTC-TTT-C---C-TAC------CATCTTGAACCCAA--ACGTAAATCAGTGTGTCCAGCAAGTatttccc
blockSeqs : A . TAG A TATTGC G A A
blockSeqs : . . . . . T A A
blockSeqs : . . . . . T A G
blockSeqs : . . . . . T A G
blockSeqs : . . . . . C G T
blockSeqs : . . . . . T A G
blockSeqs : . . . . . C G G
blockSeqs : . . . . . T A .
blockSeqs : . . . . . C A .
blockSeqs : . . . . . A A .
blockSeqs : . . . . . T A .
blockSeqs : . . . . . C A .
blockSeqs : . . . . . T A .
blockSeqs : . . . . . T A
blockSeqs : . . . . . C .
blockSeqs : . . . . . T .
blockSeqs : . . . . . C .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons :
originalCons : TTTC-TTT-C---C-TGC------CATCTTGAACTCAAACACGTAAATGAAAATGTCCCGCAAAT
finalCons : TTTC-TTT-C---C-TGC------CATCTTGAACTCAAACACGTAAATGAAAATGTCCCGCAAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CCTTCCAAAATTCTTGAACTCTGCAAACATGTACTAGAATAAAAATACCCCATCAAGAT
Unaligned ( gi|22 ): TTCTTCCCTGCTATTTTGAGCTCAGATATGAATCAAAATTTTC
Unaligned ( gi|23 ): CCAAAAACGGAAATGAAAATATCCTCAAATT
Alignments
lowQualScore : 1
lowQualScore : 2 2 333 2 555555 1 4 3
lowQualScore : . . ... . ...... . . .
lowQualScore : 0 0 555 0 888888 7 7 7
consensus : TTTC-TTT-C---C-TGC------CATCTTGAACTCAAACACGTAAATGAAAATGTCCCGCAAAT
Reference ( family-2861 ) : TTTC-TTT-C---C-TGC------CATCTTGAACTCAAACACGTAAATGAAAATGTCCCGCAAAT
gi|1 : TTTC-TCTGT---C-TGC-------ATTTTGAACTCA---ACGAAAATCAGAGTGTTCCGCCAAT
gi|10 : TTTC-TTT-C---C-TGT------TATCTTGAACGTATACACGTAGATAAAAATATCCT-CAAATattcccccaacagtctatattaa
gi|11 : aTCC-TTT-C---C-TGC------CATTTTTAACTCAAACACATGAATGGAAATGTCTCACCAAtg
gi|12 : tttcTTTC-TTT-C---C-TGC------CATCTTGAACTCAAACACATGAATGAAAATGCC
gi|13 : TTC-TTT-C---C-TGC------CATTTTGAACTCA---ACGTAtgtccaata
gi|14 : TTTC-TTT-C---C-CGC------CATCTTGAACCCAAACATGTGAATGAAAATGTCCCACAAATcagtgtccgccaataatatccctac
gi|15 : TTTC-TTT-T---C-TGT------CATCCTGAACTCAAGCACGAAAATGAAAATATCCT-CAAAT
gi|16 : TTTC-TTT-C---C-TAT------CATCTTGAACCCAAACATGTAAATGAAAATATCCT-CAAAT
gi|17 : TTCC-TTT-------TGT------CATCTTGAACTCAAGCAAATGAATGGAAATGTCCCGTCAAT
gi|18 : TCTC-TTT-T---C-TGC------CATCTTGAACCCAAACACGTGCATGAAAATGCCCC-CAA
gi|19 : TTTA-TTT-C---CATGC------CATTTTGAACACAAACACGTAAATGAAAATATCC
gi|2 : TTTC-TTT-C---C-AGC------CATTTTGAACTCAA--ACGTAAtca
gi|20 : TTCATTT-C---C-TGC------CATCTTTGACC--AACACGTAAATGAAAATATCC--CAAATtttttttgatcagccagagtgtgccaccaatattttccaa
gi|21 : TTTC-TTT-C---C-TGC------CATCTCGAACTGAAACACGTGAATGAAAATATCCCt
gi|3 : TTTC-TTT-C---C-TGC------CATTTTGAACTCTA--ACGTAAATCAGAGTGTCCCGCCAAT
gi|4 : TTTC-TTT-T---A-TTC------CATCTT------AAACACGTGGATGAAAAatttcccaac
gi|6 : TTTC-TTT-C---C-TGCTATTGCCACCTTGAAC-CAAACATGTAAATGAAAATATCTT-CAAATaactcctccaatatttcctaagatc
gi|7 : TTTC-TTC-CTAGC-TGC-------ATCTTGAACCCAAACACGTAAATGAAAATATCGCTCAAt
gi|8 : TTC-TTT-C---C-TGC------CATCTTGGTCTCAA--AGGTAAATCAGAGTGTCCCGCCAATcatt
gi|9 : TTTC-TTT-C---C-TAC------CATCTTGAACCCAA--ACGTAAATCAGTGTGTCCAGCAAGTatttccc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CCTTCCAAAATTCTTGAACTCTGCAAACATGTACTAGAATAAAAATACCCCATCAAGAT
Unaligned ( gi|22 ): TTCTTCCCTGCTATTTTGAGCTCAGATATGAATCAAAATTTTC
Unaligned ( gi|23 ): CCAAAAACGGAAATGAAAATATCCTCAAATT