lowQualScore : 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 222 333333333 666666666666666666666666666666666666666666666666666 11111111111 11 3333333333333333333333333333333333333333333 1 333333333333333333333333333333333 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 222222 1 3
lowQualScore : 8 333 8 0 222222222 2 2 22 0 2 333333333333333333333333333333333333333333333333333 4 66666666666 2 11 1 3333 1 4444444444444444444444444444444444444444444 22 22 55 444444 3 7 1 777777777777777777777777777777777 1 22 1 222 22 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 5 6 555555 2 5 0
lowQualScore : . ... . . ......... . . .. . . ................................................... . ........... . .. . .... . ........................................... .. .. .. ...... . . . ................................. . .. . ... .. ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ . . ...... . . .
lowQualScore : 0 666 0 8 666666666 9 2 99 9 1 333333333333333333333333333333333333333333333333333 0 22222222222 0 00 9 7777 7 8888888888888888888888888888888888888888888 22 22 44 666666 2 6 6 777777777777777777777777777777777 5 22 6 888 22 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 0 000000 8 2 0
consensus : TATGAGG-CGC-GGT-TTTAGTATTTTTGA--TGC-G--TTT-TCTG-ATA--TCAG-AA-------------A---A-------T-----T---------T---------TT-TT-----------TG-AT-ATC-AGAA----A-AT--C-----------GAA----TT----T-------C-------T--G--A--TA------TC-AGA-AAA--------------TC---------A-----T-TTTC-TGA--TA-TC---A--AA----A-A----TTCG----------------AT-T-T---ATTA-----------TCT-GA--T-----A----A--N-A--A--------------T----T---TT--ATTGATATG--A-TATCA--GAA-A----T-----T---A----TTTT-------CTGAT------A--T--CA-A--AAA---T-------A------ATTTTTT-GAT--ATCAGAAAAT-----N----------A---T---CTGA-N--T-CAAATGATATAATTTTTNATATCAA----------ANAA--T--A-G--ATTTT-CTGATA-T-----CAG---AAAAT-ACG-T-AA--C--ATTTTC-TG--ATA-TCAGAAAA-T-GAATTATTCG-ATTT-TTTTATATC-AGAA-AATCA----T-TT------------T-TGAT------AT---AAAAATAA--------A-TC---AACTG--GAATTT---CTT-AT--CT--GANA---AANTNATTTTT---TN-------AT-A-TC---AAA-AT---TCAA---AAAAATGGCTGCGAAAGTTCATTTAAATTAGATGAAATTCTCACCCGGGTTAAAAATTATGTGTAATANGCATATNGCACAAGGCAGTATAAGCTATGTATGTTTNTATACTTAAGTAATAANTATAACACTTAGCTTCAAATGACATCGAATGATACCCCC---A--AGAATGTCGGCCTTTTGAGCTCCCAAA
Reference ( gi|3 ) : TATGAGG-CGC-AAT-TTTAGTATTTTTGA--TGC-G--TTT-TCTG-ATA--TCAG-AA-------------A---A-------T-----T---------C---------TT-TT-----------TG-AT-GTC-AGAA----A-AT--G-----------GAA----TT----T-------G-------T--G--A--TA------TC-ACA-AAA--------------TC---------A-----C-TTTC-TGA--TA-TC---A--AA----C-A----TTCG--C-------------AT-T-T---ATTA-----------TCT-GA--T-----A----A--C-A--A--------------T----T---TT--ATTGATATG--A-TATCA--GAA-A----T-----T---A----TTTA-------CTGAT------A--T--CA-A--AAA---T-------A------ATTTTCT-GAA--ATCAGAAAAT-----G----------A---T---CTGA-A--T-CAAATGATATAACTATTAATATCAA----------ATAA--T--A-A--ATTTT-TTGATA-T-----AAG---AAAAT-ACG-T-AA--C--ATTTT--TG--GTG-TCAACAAA-TAGAATTATTCG-ATTT-TTTCACATC-AGAA-AATCA----T-TT------------T-TGAT------AT---AAAAATAA--------A-TC---AACTA--GAATTT---CTT-AT--CT--GATA---AATTTATTTTT---TT-------AT-A-TC---AAACAT---TCAA---AAAAATGGCTACAAAAATGTGTTTAA--TAAATCAATTTTATATGC---TTAGAAATTATGTGCG-TAAACATATTG-----GACAG-AT------TGCAT---CG-------AAGT-----TT-TAACACTTAGCT---AAT----TCAAATGATAACCTC---A--AGAATGTCAGTCTTTTGAGC-CCCAAAA
gi|14 : TATGAGG-CGC-AGT-TTTAGTATTTTTGA---GCTA--TTT-TCTG-ATA--TTAA-AA-------------A---A-------TAA---T---------T---------TT-CT-----------TG-AT-ATA-AAAA----A-AT--C-----------GAA----TT----T-------C-------T--G--A--TA------AC-AAA-AAA--------------TA---------A-----A--TTC-TAA--TA-TC---A--GA----
gi|1 : tTATGAGGGCGC---TGTTTAGTATTTTTGAA-TGT-A--TTT-TCTGAATA--TCAA-AAATCATTTTCTGATA---A-------T-----C---------CGAAATCCGATT-TTCC---------TG-AT-ATCAAGAA----A-AT--AAGAAATATTTTGAA----TT----T-------T-------T--GGAA--TA------TC-AGA-AAA--------------T----------AGT---T-TTTC-TGA--TA-TC---A--AA----A-A----TTTA--TTTCTGATTCAGAAAT-T-C---ATTT-----------TTT-AA--T----------A--T-A--A--------------T----T---TT--A-TAAT-TG--A-TATCA--GAA-A----A-----T---A----TTTAGGATTTTCTGAT------A--C--TC-A--AAA---T-------A------ATTCTTC-GAT--ATC--AAAAT-----A----------A---T---Ca
gi|6 : cATGAGG-TGCCGAT-TTTGGT--TTTTGAGGTAT-G--TTT-TCTG-ATA--TCAG-AA-------------ATC-A-------T-----T---------T---------TT-TT-----------AG-TC-ATC-AAAA----A-AT--T-----------GAA-----T----A-------G-------T--G--A--T-------TCAAAA-AAA--------------TG---------A-----T-TTTC-TG---TA-TC---A--AA----A-AT---TTCG----------------AT-T-T------------------TCT-GA--T-----A----T--C-A--AAAATC---------T----TAACTT--ATTT-TCTG--A-TATTAAGGAG-A----T-----TTG-A----TTTT-------TTTAT------A--T--TG-A--AGT---T-------C------ATTTTTT-gattttttttgatacaagaaaaataagtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactggattttcctgatataaaatttttttttttttttctgataatcaaaaattcacaaaatggctgcgaaagttcatttaaattagatgaaattctcacccgggttaaaattatgtgtaatatgcatattgcacaaggcagtattgtatttaagtataacacttagttcaaatgataaccccaataatgtaggccttttgagccctaga
gi|7 : cacacaatatgATGAGT-AAC-ATT-TTTTATATCATAAA--TTC-G--ATTATTTT-ATA--TCAG-AA-------------A---A-------TCA---T---------A---------TT-TTCAGGGGAAAATTG-AT-AT--AAAA----A-AT--G-------------A----TT----T-------C-------T--G--A--TA------TC-A-A-GAA--------------TTGG-------A-----A-TTTC-TGA--TA-TC---A--AA----tttaatcaataaactggttttcttgatatcagaaacatt
gi|7 : aggcgccgttagtatttttgatttaaactttatgataactcaaaaataatttAGG-CGC-CGT-T--AGTATTTTTGA--TTT-AAACTT-TATG-ATAACTCAA-AA-------------ATA-A-------T-----T--------------------T-TT-----------TG-AT-ATC-AGAA----A-TT--C-----------CAA----TT----C-------T-------T--G--A--TA------TC-A-G-AAA--------------TC---------A-----T-TTTT-T-A--TA-TC---A--A---------------------------------T-T-T----TCC-----------CCT-GA--A-----A----A--T-ATGA--------------T----T---TT---CTGATATA--A-AAT------A-A----T-----CGA-A----TTTA--------TGAT------A--T--AA-A--AAA---T-------GTTACTCATTTTCT-TAT--ATCAtttcttatatca
gi|13 : ATTTTTTT--TAC-A--TCA-TATA-ATA----AGTAA-------------C---A-------T-----T---------T---------TT-TT-----------T--AT-ATC-AGAA----A-AT--A-----------CAA----TT----TTCGATTTG-------TTTG--A--TA------TC-AGA-AAA--------------TC---------A-----T-TTTC-TGA--CA-TA---A--AA----
gi|11 : taatcgaTTTCGA--TG-------T-TCTG-ATA--TCAT-AA-------------A---A-------T-----A---------T---------TA-CT-----------TATAT--TC-TGAATTTTA-AA--G-----------AAA----TT----T-------GATTTTTTT--T--A--TA------TC-AGA-AAA--------------TC---------A-----T-TTTC-Taaatcaactggatttaaactta
gi|9 : aaaaatcgaatttctgataataaaaaatcattttatgatatcaaaaTTTGA--T-------TT-TTTG-ATA--TCAG-AA-------------A---A-------T-----CATTTAGCGAT---------TT-TC-----------TT-AC-TTC-AG-A----A-AT--T-----------CAA----TT----T-------T-------T--G--A--TA------TC-AGA-AAATATTT---------TG---------A-----T-TTTC-TGA--TA-AA---A--AAGAAGA-A----TTC------------------T-T-T---ATT------------TCA-GG--T-----A----AT-C-G--A--------------T----T---TT---T-----TG--A-TATCA--GAA-A----A-----T---AAAACTTT---------TGAT------A--T--TA-G--A
gi|7 : C-A--TTT-TTT--ATA--TCAT-AA-------------A-----------T-----T---------CGA-------TTATT-----------TT-AT-ATC-AGAA----A-AT--C-----------ATA----TT----TTCAGGG-GAAAAT--T--G--A--TA------TA-A-A-AAA--------------TG---------A-------TTTC-TGA--TA-TC---A--AG----A-A----TTGG--A-------------AT-T-T-------------------CT-GA--T-----ATCAAA--A-A--A--------------T----TA--TT--TTTGA---G--T-TATCA--TAA-A--------------G----TTTA----------A-------A--T--CA-A--AAA---T-------A------t
gi|1 : aggcgccgttag--TTT-TCTT-GTA--TCAA-AA-------------A---AAA-----TCGA--T---------T---------AT-TT-----------TG-AT-ATC-GAAG----A-AT--T-------------A----TT----T---------------T--G--AG-TA------TC-AGA-AAA--------------TCCTAAAT---A-----T-TTTC-TGA--TA-TC---A--AT----T-A----T-AA--A-------------AT-TAT---ATTAAAAAATGAATTTCT-GAA-TCAGA-A----A--T-A--AA-------------T----T---TT---------TG--A-TATCA--GAA-AAA--C-----T---A----TTTT-------CTGAT------A--TTCCA-A--AAA---TTCAAAATATTTCTTATTTTCTTGAT--ATCAGGAAA-----------------A---T---CGGA-T--TTCGGAT--------------TATCAG----------AAAA--T--G-A----TTT-TTGATATT-----CAG---AAAAT-ACA-T-ttactcattttcttatatca
gi|11 : ctatgagggcgctgtttagtatttttga--TTT-TCTG-ATA--TAAA-AA-------------A---AATCAAATT-----T---------C---------TT-TA-----------AA-AT--TC-AGAA----T-ATAAG-----------TAATAT-TT----T-------A-------T--G--A--TA------TC-AGA-ACA--------------TCGA-------A-----A-TTT--TGA--TA-TCATAA--AA----TGA----TTT------------------T-T-T---ATTA-----------TCA-GA--------A----ATTC-G--A--------------T----T---TT--ataagtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactggattttcctgatataaaatttttttttttttttctgataatcaaaaattcacaaaatggctgcgaaagttcatttaaattagatgaaattctcacccgggttaaaattatgtgtaatatgcatattgcacaaggcagtattgtatttaagtataacacttagttcaaatgataaccccaataatgtaggccttttgagccctaga
gi|9 : a--TTT-TCTG-ATA--TCAA-AA-------------A---A-------T-----C------------------------------------G-ATTACC-TGAA----ATAA--A-----------GAA----TTCTTCT-------T-------T--T--T--TA------TC-AGA-AAA--------------TC---------AAAATAT-TTTC-TGA--TA-TC---A--AA----A-A----TT-G--A-------------AT-T-T-------------------CT-GAAGT-----A----A--G-A--A--------------A------------ATCGCTA---------------A-A----T-----G---A----TTTT-------CTGAT------A--T--CA-A--AAA---tcattttct
gi|1 : tctaatatcaaaagttttaTT-TCTG-A-A--TCAG-AA-------------ATAAA-------T-----T----------------------TT-----------TG-AT-ATC-AGAA----A-AA--C-----------TAT----TT----T-------C-------T--G--A--TA------TT-CCA-AAAATTCAAAATATTTCTT---------A-----T-TTTCTTGA--TA-TC---AGGAA----A-A-----TCG--G-------------AT-T-TCGGATTA-----------TCA-GA--A-----A----A--T-G--A--------------T----T---T----TTGATAT-------TCA--GAA-A--------------A------TA-------C--AT---------T--CA-A--AAA---T-------A------atcaaat
gi|14 : ctatgagggcgctgtttagT-TCTG-ATA--TTAG-AA-------------T---T-------T-----A---------T---------TT-TT-----------TG-TT-ATC-AGAA----A-TT--C-----------GAT----TT----T-------T-------T--T--A--TA------TCAAGA-AAA--------------TT---------A-----T-TTTT-TAA--TA-TC---A--GA----ttcattttttaatataattttataattgatatcagaaaatatttaggattttctgatactcaaaataattcttcgatatcaaaataatcgattttttttgatacaagaaaaataagtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactggattttcctgatataaaatttttttttttttttctgataatcaaaaattcacaaaatggctgcgaaagttcatttaaattagatgaaattctcacccgggttaaaattatgtgtaatatgcatattgcacaaggcagtattgtatttaagtataacacttagttcaaatgataaccccaataatgtaggccttttgagccctaga
gi|9 : ttatgaggcgcagttttagtatttttgagctatttCTG-AAA--T-AA-AG-------------A---A-------T-----T---------C---------TTCTT-----------TT-TT-ATC-AGAA----A-AT--C-----------AAAATATTT----T-------C-------T--G--A--TA------TC-AAA-AAT--------------TG---------A-----A-TTTC-TGA--AG-TA---A--GA----A-A----ATCG--CTA-----------AA-T-G---ATTT-----------TCT-GA--T-----A----T--C-A--A--------------
gi|6 : tctaatatcaaaagttttattttctgatatcaaaaaatcgattacTA-ATA--TCAG-AA-------------A---A-------TAAG--T---------TAAGA-----TT-TT-----------TG-AT-ATC-AGAA----A-ATC-G-----------AAA----TT----T-------T-------T--G--A--TA-------C-AGA-AAA--------------TC---------AT----T-TTTT-TGA---A-TC---A--------------------------------------C-T---ATT----------------------------------C-A--A--------------T----T---TT---TTG--ATG--ACTA-AA--AAA-A----T-----G---A----TTT--------CTGAT------A--T--CA-G--AAA---aaaatcaaat
gi|7 : cacacaatatgatgaggtgccgattttggtttttgaggtatgtTG-ATA--T-AA-AA-------------A---A-------T-----G---------A---------TT-TC-----------TG-AT-ATC-AAGA----A-TT--G-----------GAA----TT----T-------C-------T--G--A--TA------TC-AAA-AAA--------------TT---------A-------TTTT-TGAGTTA-TC---A--aggagatttgatttttttatattgaagttcatttttttttaatcaataaactggttttcttgatatcagaaacatt
gi|11 : aggcgccgttagtatttttgatttaaacttta-ATA--TAAG-TA-------------A-----------------T---------A---------TT-TTA----------TG-AT-ATC-AGAA----C-AT--C-----------GAA----AT----T-------T-------T--G--A--TA------TC-ATA-AAA--------------TG---------A-----T-TTTT-TAT--TA-TC---A--GA----A-A----TTCG----------------AT-T-T---attttcccctgaaaatatgattttctgatataaaataatcgaatttatgatataaaaaatgttactcattttcttatatca
gi|9 : aaTA--TCAG-AA-------------A---A-------TCAAAAT---------A---------TT-TTC----------TG-AT-ATC-A-AA----A-AT--T-----------GAA----TT----T-------C-------T--G--AAGTAAGAAAATC-GCT-AAA--------------TG---------A-----T-TTTC-TGA--TA-TC---A--AA----tctgaattttaaagaaatttgattttttttatatcagaaaatcattttct
gi|13 : tctaatatcaaaagttttattttctgatatcaaaaaatcgattacctgaaataaagaattcttcttttt---------TT-TT-----------TT-AT-GTC-AGAA----A-AT--------------GAT----TT----T-------C-------T--G--A--TA------TC-AAACAAA--------------TCGAAAATTGTA-----T-TTTC-TGA--TA-TA---A--AA----A-AAATGTT------------------AC-T-T---ATTA-----------TAT-GA--T-----aaatcaaat
gi|11 : taatcgaattttttttac-AGAA----A-AT--G------------AT----TT----T-------C-------T--G--A--TA------TA-AAA-AAAA-------------TC---------A-----AATTTC-T-------TT---A--AA------A----TTCA--G-------------A-----------A-----------TAT-AAG-T-----A----A--T-A----------------------T---TT-------TATG--A-TATCA--GAACA----T-----CGAAA----TTT---------TGAT------A--T--CATA--AAA---T-------G------ATTTTTT-ATT--ATCAGAAAatcaactggatttaaactta
gi|11 : aaaaatcgaaAA----A-AT--C-----------GAA----TT----T-------C-------T--G--A--TA------AT-AAA-AAA--------------TC---------A-----T-TTTA-TGA--TA-TC---A--AA----A-T----TTCG----------------ATGT-T---CTGA-----------TAT-CA--T-----A----A----A--A--------------T----A---TT--ACTTATAT-------TCT--GAA---------------------TTT---------TAA--------------A-G--AAA---TTTG----A------TTTTTTT-TAT--ATCAGAAAAT-----C----------A---T---TT
gi|1 : a----A-AT--G-----------TAT----TT----T-------C-------T--G--AA-TA------TC-A-A-AAA--------------TC---------A-----T-TTTC-TGA--TAATC---C--GA----A-A----TCCG----------------AT-T-T-----T------------CCT-GA--T-----A----T--C-A--AGAAAATAAGAAATAT----T---TTGAATT--TTTGGAA-TATCA--GAA-A----A-----T---AGT--TTTT-------CTGAT------A--T--CA-A--AAA---T-------T------TATTTCT-G-A--TTCAGAAATT-----C----------A---T---TT------T-T---TAATATAATT-TT------------------ATAA----------------TTGATA-T-----CAG---AAAAT-ATT-T-AG--G--ATTTTC-TG--ATACTCA--AAA-T--AATTCTTCG-AT---------ATC-AAAATAATCGATTTT-TT------------T-TGAT------AC---AAGAA-AA--------A-Ttct
gi|13 : ctatgagggcgctgtttagtatttttg-----------GAT----TT----T-------T-------T--T--A--TG------TC-AGA-AAA--------------TG---------A-----T-TTTC-TGA--TA-TC---A--AA----CAA----ATCGAAA-------------AT-TGT---ATTT-----------TCT-GA--TATAAAA----A--A-A--A--------------TGTTAC---TT--ATT-ATATG--A-TGTAA--AAA-A----aagtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactggattttcctgatataaaatttttttttttttttctgataatcaaaaattcacaaaatggctgcgaaagttcatttaaattagatgaaattctcacccgggttaaaattatgtgtaatatgcatattgcacaaggcagtattgtatttaagtataacacttagttcaaatgataaccccaataatgtaggccttttgagccctaga
gi|9 : taatcgaatt-------T--A--A--TA------TC-A-A-AAG--------------TTTT-------A-----T-TTTC-TGA--TA-TC---A--AA----A-A----ATCG-------------------------ATTA-----------CCT-GAAAT-----A----A--AGA--A--------------T----TC--TT--CTT--TTT-----TATCA--GAA-AA---TCAAAAT---A----TTTT-------CTGAT------A--T--CA-A--AAA---TTG-----A------A-TTTCT-GAA--GTAAGAAAATC----G------------------CT---------AAATGAT----TTTCTGATATCAA----------AAAA--TC-A-A--ATaactggatttaaactta
gi|1 : tc-TTTC-TTG--TA-TC---A--AA----A-A-------A--A-------------AT-C-G---ATTA-----------TTTTGA--T-----ATCGAA--G-A--A--------------T----T---AT--TTTGA------G-TATCA--GAA-AATCCTAAA--T---A----TTTT-------CTGAT------A--T--CA-A--TTA---T-------A------AAATTAT------ATTAAAAAAT-----G----------AATTT---CTGA-A--T-CAGA-AATA-AATTTTTGATATCAG----------A-AA-----A-ACTATTTT-CTGATA-TTCCAAAAATTCAAAAT-ATT-T-CT--T--ATTTTCTTG--ATA-TCAGGAAAATCGGATT--TCGGATT--------ATC-AGAA-AATGA----T-TT------------T-TGAT------ATTCAGAAAATAC--------ATTC---AA
gi|14 : ctatgagggcgctgtttagtattt-----------TCT-GA--T-----ATT--A--G-A--A--------------T----T---T---ATTTTT-TG--T-TATCA--GAA-A----T-----TCG-A----TTTT-------TTTAT------A--T--CA-AGAAAA---T-------T------ATTTTTT-AAT--ATCAGAAAAT----------------A---G---CTCA-A-----AAATACTAAAACTaataagtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactggattttcctgatataaaatttttttttttttttctgataatcaaaaattcacaaaatggctgcgaaagttcatttaaattagatgaaattctcacccgggttaaaattatgtgtaatatgcatattgcacaaggcagtattgtatttaagtataacacttagttcaaatgataaccccaataatgtaggccttttgagccctaga
gi|9 : ttatgaggcgcTG--A-TATCA--GAA-AA---T-----C---A----TTTA-------GCGATTTTCTTACTT--CA-G--AAA---TTC-----A------ATTTT-T-GAT--ATCAGAAAATATTTTG----------A---TTTTCTGA-T--A-AAAAAGA-AGAATTCTTTATTTCAG----------GTAA--T--C-G--ATTTT-TTGATA-T-----CAG---AAAAT-A-----AA-----ACTTT--TG--ATA-TTAa
gi|9 : tcTA--A-TATCA--AAA-G----T-----TTT-A----TTTT-------CTGAT------A--T--CA-A--AAAAT-C-------G------ATTACCT-GAA--AT-AAAGAAT-----TCTTCTTTTTTA---T---CAGA-AAAT-CAAA--ATAT--TTTCTGATATCAA----------A-AA--T--T-G--AATTT-CTGAAG-T-----AAG---AAAAT--CGCT-AAATG--ATTTTC-TG--ATA-TCAAAAAA-TCAAATaaaaatcaaat
gi|6 : tc-----T---G----TTT--------CTGAT------A--T--CA-A--GAAAACC-------A------GTTTATT-GA----TTAAAAAA------------------------------------AAATGA----ACT-TCAATATAAA----------AAAA--TC-A-A--ATCTCCTTAATA-T-----CAG---AAAAT-AAG-TTAA--G--ATTTT--TG--ATA-TCAGAAAA-TCGAA--A-------TT-TTTGATA-C-AGAA-AATCA----T-TT------------T-T--T----------------TGA--------A-TC----ACTATTCAATTT---TTTGATGACT--AAAA---AAATGA-TTTC---TG-------AT-A-TCAGAAAACATACCTCAA---AAA
gi|6 : cacacaatatgatgaggtgccgattttgg-----T---G----TTTT-------CTGAT------A--T--CA-G--AAA---T-------C------ATTTTTT-TAGTCATCAAAAAATTG---A----------A---TA--GTGA-T--T-CAAA-AAAATGATTTTCTGTATCAA----------A-AATTT--C-G--ATTTT-CTGATA-T-----CA----AAAAT--CT-T-AA--CTTATTTTC-TG--ATA-TTAA------GGAG--ATTTG-ATTT-TTTTATATT--GAA-GTTCA----T-TT------------T-TT-T------TT------AATCA--------A-TA---AACT---GGTTTT---CTT-tt
gi|7 : cacacaatatgatgaggtgccgattttggtttttgaggta----TTTA--------TGAT------AACT--CA-A--AAA---T-------A------ATTTTTT-GAT--ATCAGAAATTCC---A----------A---TTC-TTGATA--T-CA---GAAATCATTTTTTATATCAATTTTCCCCTGAAAA--T--ATG--ATTTT-CTGATA-T-----AAA---ATAAT--CG---A------ATTTA--TG--ATA-T-AAAAAA-T---GTTACTC--ATTT-TCTTATATC-Agatatcagaaacatt
gi|13 : aggcgccgttagtatttttgatttaaacTAA--TCGA-A--TTTTT-TTTACA-T-----CAT---ATAAT-AAG-T-AA--C--ATTTT--TTTTATA-TCAGAAAA-TACAATT-TTCG-ATTTGTTTGATATC-AGAA-AATCA----T-TT------------TCTGAC------AT---AAAA--AA--------A-TC---AACT---GGATTTAAACTT-A
gi|9 : --ATTTT-TTGATA-T-----CAG---AAAATCATT-T-AG--CG-ATTTTC-TT--ACT-TC--------AGAA--ATTCA-A-TT-TTTGATATC-AGAA-AAT-A------TT------------T-TGATTTTCTGAT---AAAAA-AG--------A----------A--GAATTC---TTT-AT--TTCAGGT----AATCGATTTTT---TG-------AT-A-TC---AGA
gi|14 : tctaatatcaaaagttttatttTT-CTGATA-T-----TAG---AATTT-AT------------TTTT--TG--TTA-TCA--------GAA--ATTCG-ATTT-TTTTATATCAAGAA-AATTAT---T-TT------------T-TAAT------ATCA-GAAAATAG--------C-TC---AAcaaat
gi|7 : ttatgaggcgcagttttagtatttTGATA-T-----AAG---AAAAT-GAG-T-AA--C--ATTTT--TT--ATA-TC-ATAA---------ATTCG-ATTA-TTTTATATC-AGAA-AATCA----TATTTTCAGGGGAAAAT-TGAT------ATA--AAAAATGATTTCTGATA-TCAAGAATTG--GAATTT---CTG-AT--AT--CAAA---AAATTATTTTTGAGTT-------ATCA-T----AAA-GT---TTAAATCAAAAAT
gi|1 : aggcgccgttagtACTG--GATTTT---C-------CT--GATATAAAATTTTTTTTT---TTTTTTCTGAT-AATC---AAAAAT---TCAC---AAAA-TGGCTGCGAAAGTTCATTTAAATTAGATGAAATTCTCACCCGGGTTA-AAATTATGTGTAATATGCATATTGCACAAGGCAGTAT------TGTAT---TT-------AAGT-----AT--AACACTTAG-------T----TCAAATGATAACCCC---A--ATAATGTAGGCCTTTTGAGC-CCTAGA
gi|15 : ctatgagggcgctgtttagtatttttgaatgtattttctgaatatcaaaaatcattttctgataatccgaaatccgattttcctgatatcaagaaaataagaaatattttgaatttttggaatatcagaaaatagtttttctgatatcaaaaatttatttctgattcagaaattcattttttaatataattttataattgatatcagaaaatatttaggattttctgatactcaaaataattcttcgatatcaaaataatcgattttttttgatacaagaaaaataagtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn---TTAAAAATTATGTGTA-TAAACATATAGCACA-GGCAGTATAAGCTATGTATGTTTGTATACTTAAGTAATAATTATAACACTTAGCT----------TCAAATGATAACCCC---A--A
gi|5 : ccggaATATTTAGCTTCAAATGACACCGAATGATACCCCCCATA--AGAATGTCGGCCTTCTTAGCTCCCAAAt
gi|20 : caagACTTAGCT----------TTAAATGACACCCCC---ACAAGAATGTCGGTCTTTTgaatatgcaatacaaatgcatttactaccgttttcttctgcgataatttaattaaaagactgcattcattgtctcttatctcccaaaactgcaacaaaacagggctcgactgctcgatttcccatatgctttgtactgataccgcacagaataagcacgcgattttgattggctgcacgctcatcgaaaattacgtttggacattttatggaaagagagtgtacaacaaaatcggtgtcatttgaagctaaatacct
gi|4 : caaattCTTAGCTTCAAATGACATCGAATGATACCCCCCG-A--AGAATGTCGGACTTTTGAGCTCCCAAAt
gi|2 : aaggtcCCCC---C--AGAATGTC-GCCTTTTGAGCTCCCAAAgaataggcaatgcaaaagtacttacttccatatttttctacgataatttatctacaaatccatgtatagcaattgcctcttgtgtccgtaaaatgcaaaaaaaacatgacgcaactgctcaatatcccatttctcaccaagaagtgttgtgtagtgataccgcaccgatgaagagcgtgattttcattggctagtgcgctcgtctaaaattacgttttgaaatcttgggagttgaagccacagggaagaatgttattaataaaaattgctggcaaaatgatggttttaatggtgaccattggccataattgattttatttgatattgtttacttagtaacaaacattgggaaaagggggggactacaattaagaaggtgaggggggcttagatcgattcacccgtcttcccatgc
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): ACAAGGTACTTAGCCTGAGATGATACCCCACTGAGAAGGCCTGTCTCTTGAGCTTCCAGGGAGTATGTGATGAAAATGTATTTACACAATAATTTATCTACAAATCTATGTATGGTATGACGGCATTTATTGTCTTTTCTAGAAAAACTGCAATAGAACATGGCTTTACA
Unaligned ( gi|10 ): GAAAACGATTGGAGATGAATTCAAAATAGAAGGCAAAATTACGATTTTATTAGTGACCATTGGCCATAATTGATCATGTTTGATATTACTTAGCTAGTAACATTAGGAAAAGAAAACAATACCACAAAGATAAAGGAGACTCCACCCTTCTCCCCCAT
Unaligned ( gi|12 ): TTCAAAATGATTATTTTAATGGTGATCATTGACCATGATTGATCTTATTTAGTTAGTAACATTGGGTTAAGAACAACATACTACAAAAAATGAGAAGGAAGAGACGGGGGTCACCCCTCTCGTCCATGTT
Unaligned ( gi|16 ): TACTGACACTGTGCACAGATTTGATTGGCTGGCATGCACTTCTGAAATTATGTTTTGAAATCTTGGAATTTATCTAT
Unaligned ( gi|17 ): CAACAAGGTACTTAGCCTGAGATGATACACCACACTGAGAAGGCCTGTCTTCTTTGAGCTTCCAGGGAG
Unaligned ( gi|18 ): AGAGATTGCAATTCTTGATATCAGAAATCTTTTTTTATATCAATTTTTTCCCTGATATGA
Unaligned ( gi|19 ): TATCTACAAAACAAGACATAACACGACTGCATTTATTGCCACTTATCTCCG
Alignments
lowQualScore : 11 3333333333 1111111 2222 1 111 22222222222 99999999999999999999999999999999999999999999999999999999999999999999 33333333333 8888888888888888 1111 33333333333 1111 1 11 333 1 333333333 1 2222 1 222 222 1 222 777777777 2 333 1 11 11 11111 7777777777777777777777777777777777777 111 111111
lowQualScore : 8 44 66 0 1111111111 5 66 4 6666666 66 1111 5 1 55 5 0 111 2 0 33 33333333333 5 1 5 66666666666666666666666666666666666666666666666666666666666666666666 99999999999 55 0 1 1 0 1111111111111111 4444 1 22222222222 3 4444 3 99 888 5 111111111 3 8888 3 333 7 7 333 3 000 1 1 55 333333333 0 111 3 5 3 88 2 4 4 6 3 7 99 11 1 88888 7 5555555555555555555555555555555555555 0 0 1 111 888888 0 1
lowQualScore : . .. .. . .......... . .. . ....... .. .... . . .. . . ... . . .. ........... . . . .................................................................... ........... .. . . . . ................ .... . ........... . .... . .. ... . ......... . .... . ... . . ... . ... . . .. ......... . ... . . . .. . . . . . . .. .. . ..... . ..................................... . . . ... ...... . .
lowQualScore : 0 44 44 8 6666666666 7 99 5 2222222 99 0000 7 7 22 0 5 444 0 2 88 88888888888 7 7 7 55555555555555555555555555555555555555555555555555555555555555555555 66666666666 22 8 4 0 8 0000000000000000 0000 0 88888888888 7 7777 3 00 777 3 777777777 3 3333 3 333 3 3 333 3 555 0 0 00 555555555 0 000 0 5 0 55 5 0 0 7 7 3 77 77 0 33333 3 0000000000000000000000000000000000000 2 7 4 555 000000 4 7
consensus : TATGAGG-CGC-NGTTTTAGTATTTTTGA--TGC-G--TTTTCTGA-TA--TCAGAA-------A--AT--N-TTTTTTGATA-TCAGAAAATCGAATTTC-TGATATC-AAAAAATN--ATTTTCTGATATCA-----------AAAA-TTCG-ATTT----TCTG--AT---A----AAAATT-TTATTGA---TAT-ATATCAG-AAA------T-----TA--TTTTCTGATATCAAAAA----TT--AATTTTCTGATATCAGAAAATCATTT---TCAAATGATATAATTTTTNATATCAAANAATCGA--TTTTT-TGATATCAGAAAATACGTAACATTTTCTG-ATA-TCAG-AAAT-G-AATT-TTCGATTT-TTT-ACATCAGAA-AATCG----TTTT-TGATATAA---AAATAAATCAACTGGAATTT---CTT-ATCTGATAAANTTNTTTTTTTTTTTTCTGATAATCAAACAATTCANAAAAATGGCTGCGAAAGTNCGTTTAAATTAGATNAANTTCNCACCCGGNTTAAAAATTATGTGTAGTAAACATATTGCACA-GGCAGTAT------TGTAT----GTTT--ACACTTAAGTAA----TATAACACTTAGCTTCAAATGACACCGAATGATACCCC--C---AAGAATGTCGGCCTTTTGAGCTCCCAAA
Reference ( family-2859 ) : TATGAGG-CGC-GGTTTTAGTATTTTTGA--TGC-G--TTTTCTGA-TA--TCAGAA-------A--AT--T-TTTTTTGATA-TCAGAAAATCGAATTTC-TGATATC-AGAAAATC--ATTTTCTGATATCA-----------AAAA-TTCG-ATTTATTATCTG--AT---A----ANAATT-TTATTGA---TATGATATCAG-AAA------T-----TA--TTTTCTGATATCAAAAA----T---AATTTTTTGATATCAGAAAATNATCTGANTCAAATGATATAATTTTTNATATCAAANAATAGA--TTTTC-TGATATCAGAAAATACGTAACATTTTCTG-ATA-TCAGAAAAT-G-AATTATTCGATTT-TTTTATATCAGAA-AATCA----TTTT-TGATATAA---AAATAAATCAACTGGAATTT---CTT-ATCTGANAAANTNATTTTTTN--------ATA-TCAAA-A-TTCAAAAAAATGGCTGCGAAAGTTCATTTAAATTAGATGAAATTCTCACCCGGGTTAAAAATTATGTGTAATANGCATATNGCACAAGGCAGTATAAGCTATGTAT----GTTTNTATACTTAAGTAATAANTATAACACTTAGCTTCAAATGACATCGAATGATACCCC--C---AAGAATGTCGGCCTTTTGAGCTCCCAAA
gi|1 : TATGAGGGCGC-TGTTT-AGTATTTTTGAA-TGT-A--TTTTCTGAATA--TCA-AA-------A--AT--CATTTTCTGATAATCCGAAATCCGATTTTCCTGATATC-AAGAAA------------ATA--A-----------GAAA-T----ATTT------TG--A------------ATT-TT-TGGA-------ATATCAG-AAA------A-----TAGTTTTTCTGATATCAAAAA----T---TTATTTCTGAT-TCAGAAATTCATTT--TTTAA----TATAATTTT---------ATAAT-----------TGATATCAGAAAATATTTAGGATTTTCTG-ATACTCA--AAAT---AATTCTTCGAT---------ATCAAAATAATCGATTTTTTT-TGATACAAGAAAAATAAGT
gi|1 : cACTGGATTTT---CCTGAT---ATAAAATTTTTTTTTTTTTTTCTGATAATCAAA-AATTCACAAAA-TGGCTGCGAAAGTTCATTTAAATTAGATGAAATTCTCACCCGGGTT-AAAATTATGTGTAATATGCATATTGCACAAGGCAGTAT------TGTAT--------------TTAAG-------TATAACACTTAG-TTCA----------AATGATAACCC--C---AATAATGTAGGCCTTTTGAGCCaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactggattttcctgatataaaatttttttttttttttctgataatcaaaaattcacaaaatggctgcgaaagttcatttaaattagatgaaattctcacccgggttaaaattatgtgtaatatgcatattgcacaaggcagtattgtatttaagtataacacttagttcaaatgataaccccaataatgtaggccttttgagccctaga
gi|11 : ctatgagggcgctgtttagtatttttgaatgtattttctgaatatcaaaaatcattttctgataatccgaaatccgattttcctgatatcaagaaaataagaaatattttgaatttttggaatatcagaaaatagtttttctgatatcaaaaatttatttctgattcagaaattcattttttaatataattttataattgatatcagaaaatatttaggattttctgatactcaaaataattcttcgatatcaaaataatcgattttttttgatacaagaaaaataagtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAATCGAATTTC-TGATAAT-AAAAAATC--ATTTTATGATATCA-----------AAAT-TTCG-ATGT----TCTG--AT---ATCATAAAATA-TTACTTA---TAT----TCTG-AA-------------------TTTTAA----AGAAA----TTTGATTTTTTTTATATCAGAAAATCATTTtaga
gi|11 : a--TCAGAATATAAGTA--AT--A-TTTTATGATA-TCAGAACATCGAAATTT-TGATATC-ATAAAATG--ATTTTTTATTATCA-----------GAAA-TTCG-ATTTtct
gi|13 : aaAATCGAATTTTTT-TTACATCATATAATAAGTAACATTTTTTTTATA-TCAGAAAAT-ACAATT-TTCGATTTGTTTGATATCAGAA-AATCA----TTTTCTGACATAA---AA--AAATCAACTGG-ATTTAAACTT-Aattttaaagaaatttgattttttttatatcagaaaatcattttct
gi|14 : tTATGAGG-CGC-AGTTTTAGTATTTTTGA---GCTA--TTTTCTGA-TA--TTAAAA-------A--ATAAT-TTTCTTGATA-TAAAAAAATCGAATTTC-TGATAAC-AAAAAATA--A-ATTCTAATATCA-----------GAA
gi|15 : tCCGGATTAAAAATTATGTGTA-TAAACATATAGCACA-GGCAGTATAAGCTATGTAT----GTTTGTATACTTAAGTAATAATTATAACACTTAGCTTCAAATGATA
gi|18 : --TGC-A--ATTCTTGA-TA--TCAG-A-------A--AT--C-TTTTTTTATA-TCAaccccaat
gi|2 : agagatCCCC--C---CAGAATGTCG-CCTTTTGAGCTCCCAAAattttttccctgatatga
gi|20 : taaggtacttaacttcaaattatatcccccccccccccccACTTAGCTTTAAATGACACC--------CCCA--C---AAGAATGTCGGTCTTTTgaatatgcaatgcaaatatattttattttactactgttcccttctacgataatattatctacaaaagcatgtataacatgactgtattcattgcctcttgtctctgaaaaactgcaacaaaacatggcttgactgctcgatttcacgtttcacaccacgaaatgctttgtagtgatactgcactgattgagtgcaggattttcattgtctggcatgctcatctaaaattacgtttggaaatcttgggagttatttatagataaatgaagctgcaagaatggcacaggaaaattgttgttattaaatgcacagggaagatttgttgttattaaaaagattggagataaatttaatataatattgctttgcaaaaatgatggtttttaatggttacattggccataattgatctaacttagttacaaacattaggaataggaggactacaaacatagggagaggggggggggggggcttagttttacccatctccccctggttt
gi|3 : caaattTATGAGG-CGC-AATTTTAGTATTTTTGA--TGC-G--TTTTCTGA-TA--TCAGAA-------A--AT--T-CTTTTTGATG-TCAGAAAATGGAATTTG-TGATATC-ACAAAATC--ACTTTCTGATATCA-----------AACA-TTCGCATTTATTATCTG--AT---A----ACAATT-TTATTGA---TATGATATCAG-AAA------T-----TA--TTTACTGATATCAAAAA----T---AATTTTCTGAAATCAGAAAATGATCTGAATCAAATGATATAACTATTAATATCAAATAATAAA--TTTTT-TGATATAAGAAAATACGTAACATTTT-TG-GTG-TCAACAAATAG-AATTATTCGATTT-TTTCACATCAGAA-AATCA----TTTT-TGATATAA---AAATAAATCAACTAGAATTT---CTT-ATCTGATAAATTTATTTTTTT--------ATA-TCAAACA-TTCAAAAAAATGGCTACAAAAATGTGTTTAA--TAAATCAATTTTATAT---GCTTAGAAATTATGTGC-GTAAACATATTG-----GACAG-AT------TGCATCGAAGTTTTAACACTTAGCTAA-----------------TTCAA----------ATGATAACCT--C---AAGAATGTCAGTCTTTTGAGC-CCCAAAt
gi|4 : CTTAGCTTCAAATGACATCGAATGATACCCC--CCG-AAGAATGTCGGACTTTTGAGCTCCCAAAa
gi|5 : aaggtcATATTTAGCTTCAAATGACACCGAATGATACCCC--CCATAAGAATGTCGGCCTTCTTAGCTCCCAAAgaataggcaatgcaaaagtacttacttccatatttttctacgataatttatctacaaatccatgtatagcaattgcctcttgtgtccgtaaaatgcaaaaaaaacatgacgcaactgctcaatatcccatttctcaccaagaagtgttgtgtagtgataccgcaccgatgaagagcgtgattttcattggctagtgcgctcgtctaaaattacgttttgaaatcttgggagttgaagccacagggaagaatgttattaataaaaattgctggcaaaatgatggttttaatggtgaccattggccataattgattttatttgatattgtttacttagtaacaaacattgggaaaagggggggactacaattaagaaggtgaggggggcttagatcgattcacccgtcttcccatgc
gi|5 : caagATTTAGCTTCAAATGACACCGAgaatatgcaatacaaatgcatttactaccgttttcttctgcgataatttaattaaaagactgcattcattgtctcttatctcccaaaactgcaacaaaacagggctcgactgctcgatttcccatatgctttgtactgataccgcacagaataagcacgcgattttgattggctgcacgctcatcgaaaattacgtttggacattttatggaaagagagtgtacaacaaaatcggtgtcatttgaagctaaatacct
gi|6 : caagatatttagcttcaaatgacaccgaatgataccccccataagaatgtcggccttcttagctcccaaagaatatgcaatacaaatgcatttactaccgttttcttctgcgataatttaattaaaagactgcattcattgtctcttatctcccaaaactgcaacaaaacagggctcgactgctcgatttcccatatgctttgtactgataccgcacagaataagcacgcgattttgattggctgcacgctcatcgaaaattacgtttggacattttatggaaagagagtgtacaacaaaaATGAGG-TGCCGATTTTGGT--TTTTGAGGTAT-G--TTTTCTGA-TA--TCAGAA-------ATCAT--T-TTTTTAGTCA-TCAAAAAATTGAA-TAG-TGAT-TCAAAAAAATG--ATTTTCTG-TATCA-----------AAAATTTCG-ATTT----TCTG--ATATCA----AAAATC-TT--------------------AAC------T-----TA--TTTTCTGATATTAAGGAGATTT---GATTTTTTTATATT-GAAGTTCATTT----------------TTTTTTA-ATCAATAAACTGG--TTTTCTTGATATCAGAAAacct
gi|7 : cacacaatatgAGG-CGC-CGTT--AGTATTTTTGA--TTT-AAACTTTATGA-TAACTCA-AA-------A--AT--AATTTTTTGATA-TCAGAAATTCCAATTCT-TGATATC-AG-AAATC--ATTTTTT-ATATCAATTTTCCCCTGAAAA-TATG-ATTT----TCTG--AT---AT---AAAA---TAATCGAATTTATGATATAAA-AAATGTTACT-----CA--TTTTCTTATATCAcatt
gi|8 : ATGATACCCCACT---GAGAAGGCCTGTCTCTTGAGCTTCCA
gi|9 : acaaggtacttagcctgagTC-TAATATC-A-AAAGTTTTATTTTCTGATATCA-----------AAAA-ATCG-----ATTACCTGAAATA--A----AGAATTCTTCTT-----TTT--TATCAGAAAA------TCAAAATA--TTTTCTGATATCAAAAA----TTG-AA-TTTCTGAAGTAAGAAAATCG-CT-----AAATGAT----TTTCTGATATCAAAAAATgggagtatgtgatgaaaatgtatttacacaataatttatctacaaatctatgtatggtatgacggcatttattgtcttttctagaaaaactgcaatagaacatggctttaca
gi|9 : TTTGA--T-------TTTTTGA-TA--TCAGAA-------A--AT--caaat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAAACGATTGGAGATGAATTCAAAATAGAAGGCAAAATTACGATTTTATTAGTGACCATTGGCCATAATTGATCATGTTTGATATTACTTAGCTAGTAACATTAGGAAAAGAAAACAATACCACAAAGATAAAGGAGACTCCACCCTTCTCCCCCAT
Unaligned ( gi|12 ): TTCAAAATGATTATTTTAATGGTGATCATTGACCATGATTGATCTTATTTAGTTAGTAACATTGGGTTAAGAACAACATACTACAAAAAATGAGAAGGAAGAGACGGGGGTCACCCCTCTCGTCCATGTT
Unaligned ( gi|16 ): TACTGACACTGTGCACAGATTTGATTGGCTGGCATGCACTTCTGAAATTATGTTTTGAAATCTTGGAATTTATCTAT
Unaligned ( gi|17 ): CAACAAGGTACTTAGCCTGAGATGATACACCACACTGAGAAGGCCTGTCTTCTTTGAGCTTCCAGGGAG
Unaligned ( gi|19 ): TATCTACAAAACAAGACATAACACGACTGCATTTATTGCCACTTATCTCCG
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 88888888888888888888888888888 11 2222222222 555555555555555555555 33333333333 111 33333333333 2222222222 1111 77777777777777777777777777777777777777777777777 44444444444444 2222 11111 11 11 11 111 1 1 1 22 222 77777777777777777 1 4 222 1 11 222 1 222 22 3333333333333 1 222 11 11 11 1 333333 111111111111111111111111 1 111
lowQualScore : 8 1 8 66 0 00000000000000000000000000000 55 1 8888888888 666666666666666666666 1 6 11111111111 99 3 000 1 6 1 11111111111 6666666666 7777 55555555555555555555555555555555555555555555555 0 8 8 22222222222222 6 66 0000 66666 4 44 11 33 777 2 0 6 6 3 2 77 222 88888888888888888 3 0 0 444 3 88 7 333 3 000 1 33 6666666666666 5 111 66 1 88 1 1 1 6 1 7 99 3 6 888888 111111111111111111111111 0 66 0 777 0 1
lowQualScore : . . . .. . ............................. .. . .......... ..................... . . ........... .. . ... . . . ........... .......... .... ............................................... . . . .............. . .. .... ..... . .. .. .. ... . . . . . . .. ... ................. . . . ... . .. . ... . ... . .. ............. . ... .. . .. . . . . . . .. . . ...... ........................ . .. . ... . .
lowQualScore : 0 0 0 44 8 33333333333333333333333333333 88 0 7777777777 777777777777777777777 7 7 77777777777 22 5 222 7 7 0 77777777777 0000000000 0000 44444444444444444444444444444444444444444444444 8 0 0 00000000000000 7 22 8888 00000 7 33 00 88 000 5 0 5 7 3 0 33 000 77777777777777777 3 0 7 333 3 55 3 333 3 555 0 55 0000000000000 5 555 55 0 55 0 0 0 7 0 3 33 3 7 333333 000000000000000000000000 2 99 8 999 4 7
consensus : TATGAGG-CGCCG-TTTTAGTATTTTTGA----------TG------------C-G--TTTTCTGATA--TCAGAAA----AT--T-TTTTT---------------------TGATATCA-GAAAAT-----------CGAATTTCTG--ATATCAAAAAATC--ATTTT-CTGATATCAA-----------AAAT-TCG-A----TTT----TCTGAT--AT-A--GAAATT---TTATT-ATAT-ATATC-GAA-TT-ATTTTTTGATA-TCAA-AAA----T--T--A---ATTTTCT-GATATCAGAAAATCATTT---TCAAACGATATAATTNTTN-ATATCAAAA-AATCGA--TTTTTT--GATATNAG-AAAATANGTAACA-TTTTCTGATATCAA-AAAT-G-AATT-TT--------------CGATTT-TTTGATATCAGAAAATCA--TTTT-TGATATAAAAATAAATCAACTGGAATTT---CTT-ATCTGATAAANTTATTTTTTTTTTTTTTCTGATAATCAAACAATTCANAAAAATGGCTGCGAAAGTNCGTTTAAATTAGATNAANTTCNCACCCGGNTTAAAAATTATGTGTAGTAAACATATTGCAC-AGGCAGTAT------TGTAT-------CG-TTAAGT--TA----TAACACTTAGCTTCAAATGACA--CCGAATGATACCCCC---AAGAATGTCGGCCTTTTGAGCTCCCAAA
Reference ( family-2859 ) : TATGAGG-CGCNG-TTTTAGTATTTTTGA----------TG------------C-G--TTTTCTGATA--TCAGAAA----AT--N-TTTTT---------------------TGATATCA-GAAAAT-----------CGAATTTCTG--ATATCAAAAAATN--ATTTT-CTGATATCAA-----------AAAT-TCG-A----TTT----TCTGAT--A-----AAAATT---TTATTGATAT-ATATCAGAAATT-ATTTTCTGATA-TCAA-AAA----T--T--A---ATTTTCT-GATATCAGAAAATCATTT---TCAAATGATATAATTTTTN-ATATCAAAN-AATCGA--TTTTTT--GATATCAG-AAAATACGTAACA-TTTTCTGATATCAG-AAAT-G-AATT-TT--------------CGATTT-TTT-ACATCAGAAAATCG--TTTT-TGATATAAAAATAAATCAACTGGAATTT---CTT-ATCTGATAAANTTNTTTT--TTTTTTTTCTGATAATCAAACAATTCANAAAAATGGCTGCGAAAGTNCGTTTAAATTAGATNAANTTCNCACCCGGNTTAAAAATTATGTGTAGTAAACATATTGCAC-AGGCAGTAT------TGTATGTTT--ACACTTAAGTAATA----TAACACTTAGCTTCAAATGACA--CCGAATGATACCCCC---AAGAATGTCGGCCTTTTGAGCTCCCAAA
gi|1 : TATGAGGGCGCTG-TTT-AGTATTTTTGAATGTATTTTCTGAATATCAAAAATC-A--TTTTCTGATAA-TCCGAAATCCGAT----TTTCC---------------------TGATATCAAGAAAATAAGAAATATTTTGAATTTTTGGAATATCAGAAAATA--GTTTTTCTGATATCAA-----------AAAT-TTA-------TT----TCTGATTCA-----GAAATTCATTTTTTAATAT-A-ATT-----TT-ATAAT-TGATA-TCAG-AAAATATT--T--AGG-ATTTTCT-GATAC----------------TCAAA----ATAATTCTTCGATATCAAAATAATCGA--TTTTTTTTGATACAAGAAAAATAAGTAA
gi|1 : cACTGGATTTT---CCTGAT---ATAAAATT--TTTTTTTTTTTTTCTGATAATCAAA-AATTCAC-AAAATGGCTGCGAAAGTTCATTTAAATTAGATGAAATTCTCACCCGGGTT-AAAATTATGTGTAATATGCATATTGCACAAGGCAGTAT------TGTAT----------TTAAG---TA----TAACACTTAG-TTCA------------AATGATAACCCC---AATAATGTAGGCCTTTTGAGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactggattttcctgatataaaatttttttttttttttctgataatcaaaaattcacaaaatggctgcgaaagttcatttaaattagatgaaattctcacccgggttaaaattatgtgtaatatgcatattgcacaaggcagtattgtatttaagtataacacttagttcaaatgataaccccaataatgtaggccttttgagccctaga
gi|11 : ctatgagggcgctgtttagtatttttgaatgtattttctgaatatcaaaaatcattttctgataatccgaaatccgattttcctgatatcaagaaaataagaaatattttgaatttttggaatatcagaaaatagtttttctgatatcaaaaatttatttctgattcagaaattcattttttaatataattttataattgatatcagaaaatatttaggattttctgatactcaaaataattcttcgatatcaaaataatcgattttttttgatacaagaaaaataagtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAAT-----------CGAATTTCTG--ATAATAAAAAATC--ATTTT-ATGATATCAA-----------AATT-TCG-A----TGT----TCTGAT--ATCAT-AAAATA---TTACT--TAT-AT-TCTGAA-------TTTTAA-----AG-AAA----T--TTGA---TTTTTTT-TATATCAGAAAATCATTT---TCtaga
gi|13 : a-AATCGAATTTTTTT--TACATCAT-ATAATAAGTAACATTTTTTTTATATCAGAAAAT-ACAATT-TT--------------CGATTTGTTTGATATCAGAAAATCA--TTTTCTGACATAAAA--AAATCAACTGG-ATTTAAACTT-At
gi|14 : tTATGAGG-CGCAG-TTTTAGTATTTTTGA-----------G------------CTA--TTTTCTGATA--TTAAAAA----ATAAT-TTTCT---------------------TGATATAA-AAAAAT-----------CGAATTTCTG--ATAACAAAAAATA--A-ATT-CTAATATCAG-----------AA
gi|15 : tCCGGATTAAAAATTATGTGTA-TAAACATATAGCAC-AGGCAGTATAAGCTATGTATGTTTGTATACTTAAGTAATAATTATAACACTTAGCTTCAAATGATAACCCCAAT
gi|18 : ----------TG------------C-A--ATTCTTGATA--TCAG-AA----AT--C-TTTTT---------------------TTATATCA-
gi|2 : agagatCCCCC---CAGAATGTCG-CCTTTTGAGCTCCCAAAattttttccctgatatga
gi|20 : taaggtacttaacttcaaattatatcccccccccccccccACTTAGCTTTAAATGACA--CC--------CCCAC---AAGAATGTCGGTCTTTTgaatatgcaatgcaaatatattttattttactactgttcccttctacgataatattatctacaaaagcatgtataacatgactgtattcattgcctcttgtctctgaaaaactgcaacaaaacatggcttgactgctcgatttcacgtttcacaccacgaaatgctttgtagtgatactgcactgattgagtgcaggattttcattgtctggcatgctcatctaaaattacgtttggaaatcttgggagttatttatagataaatgaagctgcaagaatggcacaggaaaattgttgttattaaatgcacagggaagatttgttgttattaaaaagattggagataaatttaatataatattgctttgcaaaaatgatggtttttaatggttacattggccataattgatctaacttagttacaaacattaggaataggaggactacaaacatagggagaggggggggggggggcttagttttacccatctccccctggttt
gi|3 : caaattTATGAGG-CGCAA-TTTTAGTATTTTTGA----------TG------------C-G--TTTTCTGATA--TCAGAAA----AT--T-CTTTT---------------------TGATGTCA-GAAAAT-----------GGAATTTGTG--ATATCACAAAATC--ACTTT-CTGATATCAA-----------ACAT-TCGCA----TTTATTATCTGAT--A-----ACAATT---TTATTGATATGATATCAGAAATT-ATTTACTGATA-TCAA-AAA----T-----A---ATTTTCT-GAAATCAGAAAATGATCTGAATCAAATGATATAACTATTA-ATATCAAAT-AATAAA--TTTTTT--GATATAAG-AAAATACGTAACA-TTTT-TGGTGTCAACAAATAG-AATTATT--------------CGATTT-TTTCACATCAGAAAATCA--TTTT-TGATATAAAAATAAATCAACTAGAATTT---CTT-ATCTGATAAATTTATTTT--TTT--------ATA-TCAAACA-TTCAAAAAAATGGCTACAAAAATGTGTTTAA--TAAATCAATTTTATAT---GCTTAGAAATTATGTGC-GTAAACATATTGGAC-AG-----AT------TGCAT-------CG---AAGT--TT----TAACACTTAGCT---AAT------TCAAATGATAACCTC---AAGAATGTCAGTCTTTTGAGC-CCCAAAt
gi|4 : CTTAGCTTCAAATGACA--TCGAATGATACCCCCCG-AAGAATGTCGGACTTTTGAGCTCCCAAAa
gi|5 : aaggtcATATTTAGCTTCAAATGACA--CCGAATGATACCCCCCATAAGAATGTCGGCCTTCTTAGCTCCCAAAgaataggcaatgcaaaagtacttacttccatatttttctacgataatttatctacaaatccatgtatagcaattgcctcttgtgtccgtaaaatgcaaaaaaaacatgacgcaactgctcaatatcccatttctcaccaagaagtgttgtgtagtgataccgcaccgatgaagagcgtgattttcattggctagtgcgctcgtctaaaattacgttttgaaatcttgggagttgaagccacagggaagaatgttattaataaaaattgctggcaaaatgatggttttaatggtgaccattggccataattgattttatttgatattgtttacttagtaacaaacattgggaaaagggggggactacaattaagaaggtgaggggggcttagatcgattcacccgtcttcccatgc
gi|5 : caagATTTAGCTTCAAATGACA--CCGAgaatatgcaatacaaatgcatttactaccgttttcttctgcgataatttaattaaaagactgcattcattgtctcttatctcccaaaactgcaacaaaacagggctcgactgctcgatttcccatatgctttgtactgataccgcacagaataagcacgcgattttgattggctgcacgctcatcgaaaattacgtttggacattttatggaaagagagtgtacaacaaaatcggtgtcatttgaagctaaatacct
gi|6 : caagatatttagcttcaaatgacaccgaatgataccccccataagaatgtcggccttcttagctcccaaagaatatgcaatacaaatgcatttactaccgttttcttctgcgataatttaattaaaagactgcattcattgtctcttatctcccaaaactgcaacaaaacagggctcgactgctcgatttcccatatgctttgtactgataccgcacagaataagcacgcgattttgattggctgcacgctcatcgaaaattacgtttggacattttatggaaagagagtgtacaacaaaaATGAGG-TGCCGATTTTGGT--TTTTGAGG--------TA------------T-G--TTTTCTGATA--TCAGAAATC--AT--T-TTTTTAGTCATCAAAAAATTGAATAGTGAT-TCA-AAAAAA-----------TGATTTTCTG---TATCAAAAATTTCGATTTT-CTGATATCAA-----------AAATCTTA-ACTTATTT----TCTGAT--ATTAAGGAGATT---TGATTTTTTT-ATATT-GAAGTTCATTTTTTTTTAATCAATAAA----C--T--G---GTTTTCTTGATATCAGAAA--CATTacct
gi|7 : cacacaatatgAGG-CGCCG-TT--AGTATTTTTGA----------TT------------T-AAACTTTATGATAACTCA-AAA----AT--AATTTTT---------------------TGATATCA-GAAATT-----------CCAATTCTTG--ATATCAGAAA-TC--ATTTT-TT-ATATCAATTTTCCCCTGAAAAT-ATG-A----TTT----TCTGAT--A-----TAAA-------------AT-A-ATC-GAA------TTTATGATA-TAAA-AAA----TGTT--ACTCATTTTCT-TATATCA
gi|8 : ACTTAGCCTGAGATGATA--CC--------CCACT---GAGAAGGCCTGTCTCTTGAGCTTCCA
gi|9 : acaaggt----T--T--G---ATTTTTT-GATATCAGAAAATCATTT------AGCGAT----TTTCTT-ACTTCAGAA-ATTCAA--TTTTT---GATATCAG-AAAATATTTTG-A-TTTTCTGATAAAAA-AGAA-G-AATT-CTTTATTTCAGGTAATCGATTT-TTTGATATCAGAAAATAAAACTTT-TGATATgggagtatgtgatgaaaatgtatttacacaataatttatctacaaatctatgtatggtatgacggcatttattgtcttttctagaaaaactgcaatagaacatggctttaca
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAAACGATTGGAGATGAATTCAAAATAGAAGGCAAAATTACGATTTTATTAGTGACCATTGGCCATAATTGATCATGTTTGATATTACTTAGCTAGTAACATTAGGAAAAGAAAACAATACCACAAAGATAAAGGAGACTCCACCCTTCTCCCCCAT
Unaligned ( gi|12 ): TTCAAAATGATTATTTTAATGGTGATCATTGACCATGATTGATCTTATTTAGTTAGTAACATTGGGTTAAGAACAACATACTACAAAAAATGAGAAGGAAGAGACGGGGGTCACCCCTCTCGTCCATGTT
Unaligned ( gi|16 ): TACTGACACTGTGCACAGATTTGATTGGCTGGCATGCACTTCTGAAATTATGTTTTGAAATCTTGGAATTTATCTAT
Unaligned ( gi|17 ): CAACAAGGTACTTAGCCTGAGATGATACACCACACTGAGAAGGCCTGTCTTCTTTGAGCTTCCAGGGAG
Unaligned ( gi|19 ): TATCTACAAAACAAGACATAACACGACTGCATTTATTGCCACTTATCTCCG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 888888888888888888888888888 11 2222 11 555555555555555555555 33333333333 111 22222222222 222222 1111 111111111111111111111111111111111111111111111111111111111111 11111 4444444444 5555555555 22222 11 1 11 11 1 3333 333 333 2 2 2 11 222 111 55555555555555 1 222 11 11 11 1 77777777777777 222 4444444 1 111
lowQualScore : 8 3 88 0 0 000000000000000000000000000 55 1 3333 55 666666666666666666666 1 6 11111111111 77 555 0 5 77777777777 6 000000 4444 444444444444444444444444444444444444444444444444444444444444 44444 6 6 6 1111111111 6 1 5 5555555555 11111 1 44 0 33 88 1 3 1 6666 111 888 0 0 2 0 88 7 333 8888 4 999 4 11111111111111 5 111 66 1 88 1 1 1 6 1 7 99 3 6 88888888888888 999 5555555 0 66 0 777 0 1
lowQualScore : . . .. . . ........................... .. . .... .. ..................... . . ........... .. ... . . ........... . ...... .... ............................................................ ..... . . . .......... . . . .......... ..... . .. . .. .. . . . .... ... ... . . . . .. . ... .... . ... . .............. . ... .. . .. . . . . . . .. . . .............. ... ....... . .. . ... . .
lowQualScore : 0 2 88 8 8 333333333333333333333333333 88 0 3333 88 777777777777777777777 7 7 77777777777 99 333 1 7 11111111111 7 000000 2222 888888888888888888888888888888888888888888888888888888888888 55555 7 7 7 2222222222 7 4 0 7777777777 00000 0 33 0 88 33 0 3 0 5555 000 000 0 0 5 0 55 3 333 3333 0 555 0 00000000000000 5 555 55 0 55 0 0 0 7 0 3 33 3 7 33333333333333 000 7777777 2 99 8 999 4 7
consensus : TATGAGG-CGCCG-TTTTAGTATTTTTGA----------TG------------C-GTTTTCTGATA--TCAGAAA----AT--TTTTTT---------------------TGATATCA-GAAAAT-----------CGAATTTCTG--ATATCAAAAAATC--ATTTT-CTGATATCA-----------AAAAT-TCG-A----TTT----TCTGATAT---A-AA-AATT---TTATT--TAT-AT------ATCG--AA--TT-------------ATTTT----TTG-ATA-TCAA-AAA----TTA---ATTTTCT-GATATCAGAAAATCGTT----TCAAATGATATAATTNTTN-ATATCAAAA-AATCGA--TTTTTT--GATATAAG-AAAATAAGTAACATTTTTTNTGTGTCAGACAAATAGCAATTATTCGATTTGTTTNACATCAGAAAATCATTTTCTGACATAAAAATAAATCAACTGGAATTT---CTTATCTGATANANTTANTTTTTTTTTTTTTTTCTGATAATCAAACAATTCANAAAAATGGCTGCGAAAGTNCGTTTAAATTAGATNAANTTCNCACCCGGNTTAAAAATTATGTGTAGTAAACATATTGCAC-AGGCAGTA--------------TTGTAT--TTAAG------TTATAACACTTAGCTTCAAATGACA--CCGAATGATACCCCC---AAGAATGTCGGCCTTTTGAGCTCCCAAA
Reference ( family-2859 ) : TATGAGG-CGCCG-TTTTAGTATTTTTGA----------TG------------C-GTTTTCTGATA--TCAGAAA----AT--TTTTTT---------------------TGATATCA-GAAAAT-----------CGAATTTCTG--ATATCAAAAAATC--ATTTT-CTGATATCA-----------AAAAT-TCG-A----TTT----TCTGATAT---A-GA-AATT---TTATT-ATAT-AT------ATCG--AA--TT-------------ATTTT----TTG-ATA-TCAA-AAA----TTA---ATTTTCT-GATATCAGAAAATCATTT---TCAAACGATATAATTNTTN-ATATCAAAA-AATCGA--TTTTTT--GATATNAG-AAAATANGTAACATTTTCTG-ATATCA-A-AAAT-G-AATT-TTCGATTT-TTTGATATCAGAAAATCATTTT-TGATATAAAAATAAATCAACTGGAATTT---CTTATCTGATAAANTTATTTTT--TTTTTTTTTCTGATAATCAAACAATTCANAAAAATGGCTGCGAAAGTNCGTTTAAATTAGATNAANTTCNCACCCGGNTTAAAAATTATGTGTAGTAAACATATTGCAC-AGGCAGTA--------------TTGTATCGTTAAG------TTATAACACTTAGCTTCAAATGACA--CCGAATGATACCCCC---AAGAATGTCGGCCTTTTGAGCTCCCAAA
gi|1 : TATGAGGGCGCTG-TTT-AGTATTTTTGAATGTATTTTCTGAATATCAAAAATC-ATTTTCTGATAA-TCCGAAATCCGAT--TTTCCT----------------------GATATCAAGAAAATAAGAAATATTTTGAATTTTTGGAATATCAGAAAATA--GTTTTTCTGATATCA-----------AAAAT-TTA-------TT----TCTGATTC---A-GA-AATTCATTTTTT-A-AT-AT------A------------------------ATTTTATAATTG-ATA-TCAG-AAAATATTTAGG-ATTTTCT-GATAC----------------TCAAA----ATAATTCTTCGATATCAAAATAATCGA--TTTTTTTTGATACAAGAAAAATAAGTAA
gi|1 : cACTGGATTTT---C----CTGATATAA--AATTTTTTTTTTTTTTTCTGATAATCAAA-AATTCAC-AAAATGGCTGCGAAAGTTCATTTAAATTAGATGAAATTCTCACCCGGGTT-AAAATTATGTGTAATATGCATATTGCACAAGGCAGTA--------------TTGTAT--TTAAG-------TATAACACTTAG-TTCA------------AATGATAACCCC---AATAATGTAGGCCTTTTGAGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactggattttcctgatataaaatttttttttttttttctgataatcaaaaattcacaaaatggctgcgaaagttcatttaaattagatgaaattctcacccgggttaaaattatgtgtaatatgcatattgcacaaggcagtattgtatttaagtataacacttagttcaaatgataaccccaataatgtaggccttttgagccctaga
gi|11 : ctatgagggcgctgtttagtatttttgaatgtattttctgaatatcaaaaatcattttctgataatccgaaatccgattttcctgatatcaagaaaataagaaatattttgaatttttggaatatcagaaaatagtttttctgatatcaaaaatttatttctgattcagaaattcattttttaatataattttataattgatatcagaaaatatttaggattttctgatactcaaaataattcttcgatatcaaaataatcgattttttttgatacaagaaaaataagtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAAT-----------CGAATTTCTG--ATAATAAAAAATC--ATTTT-ATGATATCA-----------AAATT-TCG-A----TGT----TCTGATATC--ATAA-AATA---TTACT--TAT-AT------TCTG--AA--TTTTAAAGAAATTTGATTTT----TTTTATA-TCAG-AAA----ATC---ATTTTCT-taga
gi|13 : a-AATCGAATTTTTTT--TACATCAT-ATAATAAGTAACATTTTTTTTATATCAGA-AAAT-ACAATT-TTCGATTTGTTTGATATCAGAAAATCATTTTCTGACATAAAA--AAATCAACTGG-ATTTAAACTTA
gi|14 : tTATGAGG-CGCAG-TTTTAGTATTTTTGA-----------G------------CTATTTTCTGATA--TTAAAAA----ATAATTTTCT---------------------TGATATAA-AAAAAT-----------CGAATTTCTG--ATAACAAAAAATA--A-ATT-CTAATATCA-----------GAA
gi|15 : tCCGGATTAAAAATTATGTGTA-TAAACATATAGCAC-AGGCAGTATAAGCTATGTATGTTTGTATACTTAAGTAATAATTATAACACTTAGCTTCAAATGATAACCCCAAT
gi|18 : ----------TG------------C-AATTCTTGATA--TCAG-AA----AT--CTTTTT---------------------TTATATCA-
gi|2 : agagatCCCCC---CAGAATGTCG-CCTTTTGAGCTCCCAAAattttttccctgatatga
gi|20 : taaggtacttaacttcaaattatatcccccccccccccccACTTAGCTTTAAATGACA--CC--------CCCAC---AAGAATGTCGGTCTTTTgaatatgcaatgcaaatatattttattttactactgttcccttctacgataatattatctacaaaagcatgtataacatgactgtattcattgcctcttgtctctgaaaaactgcaacaaaacatggcttgactgctcgatttcacgtttcacaccacgaaatgctttgtagtgatactgcactgattgagtgcaggattttcattgtctggcatgctcatctaaaattacgtttggaaatcttgggagttatttatagataaatgaagctgcaagaatggcacaggaaaattgttgttattaaatgcacagggaagatttgttgttattaaaaagattggagataaatttaatataatattgctttgcaaaaatgatggtttttaatggttacattggccataattgatctaacttagttacaaacattaggaataggaggactacaaacatagggagaggggggggggggggcttagttttacccatctccccctggttt
gi|3 : caaattTATGAGG-CGCAA-TTTTAGTATTTTTGA----------TG------------C-GTTTTCTGATA--TCAGAAA----AT--TCTTTT---------------------TGATGTCA-GAAAAT-----------GGAATTTGTG--ATATCACAAAATC--ACTTT-CTGATATCA-----------AACAT-TCGCA----TTTATTATCTGATA-------ACAATT---TTATTGATATGAT------ATCAGAAA--TT-------------ATTTA----CTG-ATA-TCAA-AAA----T-A---ATTTTCT-GAAATCAGAAAATGATCTGAATCAAATGATATAACTATTA-ATATCAAAT-AATAAA--TTTTTT--GATATAAG-AAAATACGTAACATTTT-TG-GTGTCA-ACAAATAG-AATTATTCGATTT-TTTCACATCAGAAAATCATTTT-TGATATAAAAATAAATCAACTAGAATTT---CTTATCTGATAAATTTATTTTT--TT----------ATA-TCAAACA-TTCAAAAAAATGGCTACAAAAATGTGTTTAA--TAAATCAATTTTATAT---GCTTAGAAATTATGTGC-GTAAACATATTGGAC-AG-----A--------------TTGCATCG--AAG------TTTTAACACTTAGCT---AAT------TCAAATGATAACCTC---AAGAATGTCAGTCTTTTGAGC-CCCAAAt
gi|4 : CTTAGCTTCAAATGACA--TCGAATGATACCCCCCG-AAGAATGTCGGACTTTTGAGCTCCCAAAa
gi|5 : aaggtcATATTTAGCTTCAAATGACA--CCGAATGATACCCCCCATAAGAATGTCGGCCTTCTTAGCTCCCAAAgaataggcaatgcaaaagtacttacttccatatttttctacgataatttatctacaaatccatgtatagcaattgcctcttgtgtccgtaaaatgcaaaaaaaacatgacgcaactgctcaatatcccatttctcaccaagaagtgttgtgtagtgataccgcaccgatgaagagcgtgattttcattggctagtgcgctcgtctaaaattacgttttgaaatcttgggagttgaagccacagggaagaatgttattaataaaaattgctggcaaaatgatggttttaatggtgaccattggccataattgattttatttgatattgtttacttagtaacaaacattgggaaaagggggggactacaattaagaaggtgaggggggcttagatcgattcacccgtcttcccatgc
gi|5 : caagATTTAGCTTCAAATGACA--CCGAgaatatgcaatacaaatgcatttactaccgttttcttctgcgataatttaattaaaagactgcattcattgtctcttatctcccaaaactgcaacaaaacagggctcgactgctcgatttcccatatgctttgtactgataccgcacagaataagcacgcgattttgattggctgcacgctcatcgaaaattacgtttggacattttatggaaagagagtgtacaacaaaatcggtgtcatttgaagctaaatacct
gi|6 : caagatatttagcttcaaatgacaccgaatgataccccccataagaatgtcggccttcttagctcccaaagaatatgcaatacaaatgcatttactaccgttttcttctgcgataatttaattaaaagactgcattcattgtctcttatctcccaaaactgcaacaaaacagggctcgactgctcgatttcccatatgctttgtactgataccgcacagaataagcacgcgattttgattggctgcacgctcatcgaaaattacgtttggacattttatggaaagagagtgtacaacaaaaATGAGG-TGCCGATTTTGGT--TTTTGAGG--------TA------------T-GTTTTCTGATA--TCAGAAATC--AT--TTTTTTAGTCATCAAAAAATTGAATAGTGAT-TCA-AAAAAA-----------TGATTTTCTG---TATCAAAAATTTCGATTTT-CTGATATCA-----------AAAATCTTA-ACTTATTT----TCTGATATTAAG-GA-GATT---TGATT-TTTTTAT------ATTG--AAGTTC-------------ATTTT----TTT-TTAATCAATAAA----CTG---GTTTTCTTGATATCAGAAA--CATTacct
gi|7 : cacacaatatgAGG-CGCCG---TTAGTATTTTTGATT--------TA------------A-ACTTTATGATAACTCA-AAA----ATA-ATTTTT---------------------TGATATCA-GAAATT-----------CCAATTCTTG--ATATC-AGAAATC--ATTTT-TT-ATATCAATTTTCCCCTGAAAAT-ATG-A----TTT----TCTGATAT---A-AA-A-------TA----------------ATCG--AA-------------------TTT----ATG-ATA-TAAA-AAATG--TTACTCATTTTCT-TATATCA
gi|8 : ACTTAGCCTGAGATGATA--CC--------CCACT---GAGAAGGCCTGTCTCTTGAGCTTCCA
gi|9 : acaaggtTCTA--ATATCAAAAGTTTT-ATTTT-CTGATATCA-----------AAAAA-TCG-A----TTA----CCTGAAAT---A-AAGAATTC--TTCTT-TTTT-ATCAGAAAATCA--AA--AT-------------ATTTT----CTG-ATA-TCAA-AAA----TTG---AATTTCT-GAAGTAAGAAAATCGCT------AAATGAT----TTTCTG-ATATCAAAA-AATCAA--gggagtatgtgatgaaaatgtatttacacaataatttatctacaaatctatgtatggtatgacggcatttattgtcttttctagaaaaactgcaatagaacatggctttaca
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAAACGATTGGAGATGAATTCAAAATAGAAGGCAAAATTACGATTTTATTAGTGACCATTGGCCATAATTGATCATGTTTGATATTACTTAGCTAGTAACATTAGGAAAAGAAAACAATACCACAAAGATAAAGGAGACTCCACCCTTCTCCCCCAT
Unaligned ( gi|12 ): TTCAAAATGATTATTTTAATGGTGATCATTGACCATGATTGATCTTATTTAGTTAGTAACATTGGGTTAAGAACAACATACTACAAAAAATGAGAAGGAAGAGACGGGGGTCACCCCTCTCGTCCATGTT
Unaligned ( gi|16 ): TACTGACACTGTGCACAGATTTGATTGGCTGGCATGCACTTCTGAAATTATGTTTTGAAATCTTGGAATTTATCTAT
Unaligned ( gi|17 ): CAACAAGGTACTTAGCCTGAGATGATACACCACACTGAGAAGGCCTGTCTTCTTTGAGCTTCCAGGGAG
Unaligned ( gi|19 ): TATCTACAAAACAAGACATAACACGACTGCATTTATTGCCACTTATCTCCG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 11111 11 1111 4444444444444444 1111 00000000000000000000000000000000000000000000000000000000000000000000000 1111111 1111 8888888888888888888888888888888888 1 22 1 1 222 222 33 1 1 1 11 222 111 8888888888888888 1 222 11 11 11 1 333333 7777777777777777777777 1 111
lowQualScore : 0 000 3 3 22222 8 8 44 11 6666 8 0 6 5 5 7777777777777777 77 6 6 4444 44444444444444444444444444444444444444444444444444444444444444444444444 6 9999999 4444 1 0 6666666666666666666666666666666666 1 99 0 6 22 0 3 0 666 111 00 5 5 1 5 88 7 333 8888 1 999 1 1111111111111111 5 111 66 1 88 1 1 1 6 1 7 99 3 6 888888 1111111111111111111111 0 66 0 777 0 1
lowQualScore : . ... . . ..... . . .. .. .... . . . . . ................ .. . . .... ....................................................................... . ....... .... . . .................................. . .. . . .. . . . ... ... .. . . . . .. . ... .... . ... . ................ . ... .. . .. . . . . . . .. . . ...... ...................... . .. . ... . .
lowQualScore : 0 555 2 2 88888 0 0 00 00 0000 0 8 7 7 7 9999999999999999 99 7 7 2222 55555555555555555555555555555555555555555555555555555555555555555555555 7 3333333 2222 4 8 2222222222222222222222222222222222 0 00 6 7 00 0 0 0 555 000 00 5 0 0 0 55 3 333 3333 0 555 0 0000000000000000 5 555 55 0 55 0 0 0 7 0 3 33 3 7 333333 0000000000000000000000 2 99 8 999 4 7
consensus : TATGAGG-CGCNG-TTTTAGTATTTTTG-A--TGC-GTTTTCTG-ATATCAGAAA--AT--T-TTTTTTGAT-ATCAGAAAATCGAATTT-CTGATATC-AA-AAAAT------C-AT------TTTCTG--ATATCAAAAA-TTCG-ATTT----TCTGATATC--A-AA-A----ATT----TT---------ATT--TAT----ATATC-G--AA--TT-------------ATTTTCTG-ATATCAAAAA---TT--AATTTT----CTGATATCAGAAAATCA-TTT-----GAA-----TGAT-------ATAATTTTT-GATATCAAAA-AATCGA-TTTTT-TTGATATNAG-AAAATAAGTAACATTTTTNTTGTGTCAGACAAATAGCAATTATTCGATTTGTTTNACATCAGAAAATCATTTTCTGACATAAAAATAAATCAACTGGAATTT---CTTATCTGATANANTTANTTTTTTTTTTTTTTTTTCTGATAATCAAACAATTCANAAAAATGGCTGCGAAAGTNCGTTTAAATTAGATNAANTTCNCACCCGGNTTAAAAATTATGTGTAGTAAACATATTGCAC-AGGCAGTAT------TGTAT----------TTAAG------TTATAACACTTAGCTTCAAATGACA--CCGAATGATACCCCC---AAGAATGTCGGCCTTTTGAGCTCCCAAA
Reference ( family-2859 ) : TATGAGG-CGCCG-TTTTAGTATTTTTG-A--TGC-GTTTTCTG-ATATCAGAAA--AT--T-TTTTTTGAT-ATCAGAAAATCGAATTT-CTGATATC-AA-AAAAT------C-AT------TTTCTG--ATATCAAAAA-TTCG-ATTT----TCTGATAT---A-AA-A----ATT----TT---------ATT--TAT----ATATC-G--AA--TT-------------ATTTTTTG-ATATCAAAAA---TT--AATTTT----CTGATATCAGAAAATCG-TTT----CAAA-----TGAT-------ATAATTNTT-NATATCAAAA-AATCGA--TTTT-TTGATATAAG-AAAATAAGTAACATTTTTTNTGTGTCAGACAAATAGCAATTATTCGATTTGTTTNACATCAGAAAATCATTTTCTGACATAAAAATAAATCAACTGGAATTT---CTTATCTGATANANTTANTTTTTT--TTTTTTTTTCTGATAATCAAACAATTCANAAAAATGGCTGCGAAAGTNCGTTTAAATTAGATNAANTTCNCACCCGGNTTAAAAATTATGTGTAGTAAACATATTGCAC-AGGCAGTAT------TGTAT----------TTAAG------TTATAACACTTAGCTTCAAATGACA--CCGAATGATACCCCC---AAGAATGTCGGCCTTTTGAGCTCCCAAA
gi|1 : TATGAGGGCGCTG-TTT-AGTATTTTTGAA--TGT-ATTTTCTGAATATCA-AAA--AT--CATTTTCTGATAATCCGAAATCCGATTTTCCTGATATC-AAGAAAATAAGAAAT-ATTTTGAATTTTTGGAATATCAGAAA-ATAG-TTTT----TCTGATAT---C-AA-A----AAT----TT---------ATT--TCTG---AT-TCAG--AAATTC-------------ATTTTTTA-ATA-----------T--AATTTTATAATTGATATCAGAAAAT-A-TTT----AGGATTTTCTGATACTCAAAATAATTCTTCGATATCAAAATAATCGATTTTTT-TTGATACAAGAAAAATAAGTAA
gi|1 : cACTGGATTTT---C----CTGATATAA--AATTTT--TTTTTTTTTTTCTGATAATCAAA-AATTCAC-AAAATGGCTGCGAAAGTTCATTTAAATTAGATGAAATTCTCACCCGGGTT-AAAATTATGTGTAATATGCATATTGCACAAGGCAGTAT------TGTAT----------TTAAG-------TATAACACTTAG-TTCA------------AATGATAACCCC---AATAATGTAGGCCTTTTGAGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactggattttcctgatataaaatttttttttttttttctgataatcaaaaattcacaaaatggctgcgaaagttcatttaaattagatgaaattctcacccgggttaaaattatgtgtaatatgcatattgcacaaggcagtattgtatttaagtataacacttagttcaaatgataaccccaataatgtaggccttttgagccctaga
gi|11 : ctatgagggcgctgtttagtatttttgaatgtattttctgaatatcaaaaatcattttctgataatccgaaatccgattttcctgatatcaagaaaataagaaatattttgaatttttggaatatcagaaaatagtttttctgatatcaaaaatttatttctgattcagaaattcattttttaatataattttataattgatatcagaaaatatttaggattttctgatactcaaaataattcttcgatatcaaaataatcgattttttttgatacaagaaaaataagtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAATCGAATTT-CTGATAAT-AA-AAAAT------C-AT------TTTATG--ATATCAAAAT-TTCG-ATGT----TCTGATATC--ATAA-A----ATA----TT---------ACT--TAT----ATTCT-G--AA--TTTTAAAGAAATTTGATTTTTTTTATATCAGAAA---AT--CATTTT----CTtaga
gi|13 : a-AATCGAATTTTT-TTTACATCAT-ATAATAAGTAACATTTTTTTTATATCAGA-AAATA-CAATT-TTCGATTTGTTTGATATCAGAAAATCATTTTCTGACATAAAA--AAATCAACTGG-ATTTAAACTTA
gi|14 : tTATGAGG-CGCAG-TTTTAGTATTTTTG-A---GCTATTTTCTG-ATATTAAAAA--ATAAT-TTTCTTGAT-ATAAAAAAATCGAATTT-CTGATAAC-AA-AAAAT------A-A-------ATTCTA--ATATCAGAA
gi|15 : tCCGGATTAAAAATTATGTGTA-TAAACATATAGCAC-AGGCAGTATAAGCTATGTATGTTTGTATACTTAAGTAATAATTATAACACTTAGCTTCAAATGATAACCCCAAT
gi|18 : --TGC-AATTCTTG-ATATCAG-AA--AT--C-TTTTTTTAT-ATCA
gi|2 : agagatCCCCC---CAGAATGTCG-CCTTTTGAGCTCCCAAAattttttccctgatatga
gi|20 : taaggtacttaacttcaaattatatcccccccccccccccACTTAGCTTTAAATGACA--CC--------CCCAC---AAGAATGTCGGTCTTTTgaatatgcaatgcaaatatattttattttactactgttcccttctacgataatattatctacaaaagcatgtataacatgactgtattcattgcctcttgtctctgaaaaactgcaacaaaacatggcttgactgctcgatttcacgtttcacaccacgaaatgctttgtagtgatactgcactgattgagtgcaggattttcattgtctggcatgctcatctaaaattacgtttggaaatcttgggagttatttatagataaatgaagctgcaagaatggcacaggaaaattgttgttattaaatgcacagggaagatttgttgttattaaaaagattggagataaatttaatataatattgctttgcaaaaatgatggtttttaatggttacattggccataattgatctaacttagttacaaacattaggaataggaggactacaaacatagggagaggggggggggggggcttagttttacccatctccccctggttt
gi|3 : caaattTATGAGG-CGCAA-TTTTAGTATTTTTG-A--TGC-GTTTTCTG-ATATCAGAAA--AT--T-CTTTTTGAT-GTCAGAAAATGGAATTT-GTGATATC-AC-AAAAT------C-AC------TTTCTG--ATATCAAACA-TTCGCATTTATTATCTGATA------AC-A----ATT----TT---------ATTGATATG---ATATC-AGAAA--TT-------------ATTTACTG-ATATCAAAAA---T---AATTTT----CTGAAATCAGAAAATGA-TCTGAATCAAA-----TGAT-------ATAACTATT-AATATCAAAT-AATAAA--TTTT-TTGATATAAG-AAAATACGTAACATTTTTG--GTGTCA-ACAAATAG-AATTATTCGATTT-TTTCACATCAGAAAATCATTTT-TGATATAAAAATAAATCAACTAGAATTT---CTTATCTGATAAATTTATTTTTTT--------------ATA-TCAAACA-TTCAAAAAAATGGCTACAAAAATGTGTTTAA--TAAATCAATTTTATAT---GCTTAGAAATTATGTGC-GTAAACATATTGGAC-AG-----AT------TGCAT----------CGAAG------TTTTAACACTTAGCT---AAT------TCAAATGATAACCTC---AAGAATGTCAGTCTTTTGAGC-CCCAAAt
gi|4 : CTTAGCTTCAAATGACA--TCGAATGATACCCCCCG-AAGAATGTCGGACTTTTGAGCTCCCAAAa
gi|5 : aaggtcATATTTAGCTTCAAATGACA--CCGAATGATACCCCCCATAAGAATGTCGGCCTTCTTAGCTCCCAAAgaataggcaatgcaaaagtacttacttccatatttttctacgataatttatctacaaatccatgtatagcaattgcctcttgtgtccgtaaaatgcaaaaaaaacatgacgcaactgctcaatatcccatttctcaccaagaagtgttgtgtagtgataccgcaccgatgaagagcgtgattttcattggctagtgcgctcgtctaaaattacgttttgaaatcttgggagttgaagccacagggaagaatgttattaataaaaattgctggcaaaatgatggttttaatggtgaccattggccataattgattttatttgatattgtttacttagtaacaaacattgggaaaagggggggactacaattaagaaggtgaggggggcttagatcgattcacccgtcttcccatgc
gi|5 : caagATTTAGCTTCAAATGACA--CCGAgaatatgcaatacaaatgcatttactaccgttttcttctgcgataatttaattaaaagactgcattcattgtctcttatctcccaaaactgcaacaaaacagggctcgactgctcgatttcccatatgctttgtactgataccgcacagaataagcacgcgattttgattggctgcacgctcatcgaaaattacgtttggacattttatggaaagagagtgtacaacaaaatcggtgtcatttgaagctaaatacct
gi|6 : caagatatttagcttcaaatgacaccgaatgataccccccataagaatgtcggccttcttagctcccaaagaatatgcaatacaaatgcatttactaccgttttcttctgcgataatttaattaaaagactgcattcattgtctcttatctcccaaaactgcaacaaaacagggctcgactgctcgatttcccatatgctttgtactgataccgcacagaataagcacgcgattttgattggctgcacgctcatcgaaaattacgtttggacattttatggaaagagagtgtacaacaaaaATGAGG-TGCCGATTTTGGT--TTTTG-AGGTAT-GTTTTCTG-ATATCAGAAATCAT--T-TTTTTAGTC-ATCAAAAAATTGAA-TA-GTGAT-TCAAA-AAAAT------G-AT------TTTCTG---TATCAAAAATTTCG-ATTT----TCTGATATC--A-AA-A----ATC----TT---------A--------------------AC--TT-------------ATTTTCTG-ATATTAAGGAGATTT--GATTTT----TTTATATT-GAAGTTCA-TTT----------------------------TTTTT-TA-ATCAATA-AACTGG--TTTTCTTGATATCAG-AAAacct
gi|7 : cacacaatatgTGATATA-AG-AAAATGAGTAAC-AT------TTTTT---ATATCATAAA-TTCG-ATTA----TTTTATATCAGA-AA-ATCATATT----TTCAGGGGAAAATT--GAT----ATAAA-A--AA--TG-------------ATTTCT-G-ATATCAAGAA---TTGGAATTT-----CTGATATCAAAAAATTATTTT----TGAG-----TTATC------ATAAAGTTT-AA-ATCAAAA-Acatt
gi|8 : aggcgccgttagtaACTTAGCCTGAGATGATA--CC--------CCACT---GAGAAGGCCTGTCTCTTGAGCTTCCA
gi|9 : acaaggtT-CTAATATC-AA-AAGTT------TTAT------TTTCTG--ATATCAAAAA-ATCG-ATTA----CCTGAAAT---A-AAGA----ATTCTTCTT---------TTT--TATCAGAAAATC-A--AA--AT-------------ATTTTCTG-ATATCAAAAA---TT--GAATTT----CTGAAGTAAGAAAATCG-CT------AAA-----TGAT-----------TTTCT-GATATCAAAA-AATCAA--gggagtatgtgatgaaaatgtatttacacaataatttatctacaaatctatgtatggtatgacggcatttattgtcttttctagaaaaactgcaatagaacatggctttaca
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAAACGATTGGAGATGAATTCAAAATAGAAGGCAAAATTACGATTTTATTAGTGACCATTGGCCATAATTGATCATGTTTGATATTACTTAGCTAGTAACATTAGGAAAAGAAAACAATACCACAAAGATAAAGGAGACTCCACCCTTCTCCCCCAT
Unaligned ( gi|12 ): TTCAAAATGATTATTTTAATGGTGATCATTGACCATGATTGATCTTATTTAGTTAGTAACATTGGGTTAAGAACAACATACTACAAAAAATGAGAAGGAAGAGACGGGGGTCACCCCTCTCGTCCATGTT
Unaligned ( gi|16 ): TACTGACACTGTGCACAGATTTGATTGGCTGGCATGCACTTCTGAAATTATGTTTTGAAATCTTGGAATTTATCTAT
Unaligned ( gi|17 ): CAACAAGGTACTTAGCCTGAGATGATACACCACACTGAGAAGGCCTGTCTTCTTTGAGCTTCCAGGGAG
Unaligned ( gi|19 ): TATCTACAAAACAAGACATAACACGACTGCATTTATTGCCACTTATCTCCG
Alignments
lowQualScore : 11111111111111111111111111111 111111111111111111
lowQualScore : 00000000000000000000000000000 11 2222 1111 33333333333 22222222222 1 1111 66666666666666666666666666666666 555555555555 8888888888888888888 11 1 1 111 222 33 1 1 1 11 222 111 111111111111111111 1 222 11 11 11 1 333333 7777777777777777777777 1 111
lowQualScore : 8 1 8 66 0 11111111111111111111111111111 99 3 8888 5555 6 8 11111111111 5 77 77 88 0 5 33333333333 1 5 2222 4 5 11111111111111111111111111111111 77 1 111111111111 2 6 44 2222222222222222222 1 00 3 8 8 0 3 1 0 999 111 00 5 5 1 5 88 7 333 8888 1 999 1 111111111111111111 5 111 66 1 88 1 1 1 6 1 7 99 3 6 888888 1111111111111111111111 0 66 0 777 0 1
lowQualScore : . . . .. . ............................. .. . .... .... . . ........... . .. .. .. . . ........... . . .... . . ................................ .. . ............ . . .. ................... . .. . . . . . . . ... ... .. . . . . .. . ... .... . ... . .................. . ... .. . .. . . . . . . .. . . ...... ...................... . .. . ... . .
lowQualScore : 0 0 0 44 8 00000000000000000000000000000 00 2 0000 2222 0 0 77777777777 3 99 44 77 1 7 88888888888 4 7 1111 3 7 66666666666666666666666666666666 99 0 222222222222 5 7 88 7777777777777777777 2 22 2 0 0 0 2 0 0 555 000 00 5 0 0 0 55 3 333 3333 0 555 0 000000000000000000 5 555 55 0 55 0 0 0 7 0 3 33 3 7 333333 0000000000000000000000 2 99 8 999 4 7
consensus : TATGAGG-CGCCG-TTTTAGTATTTTTGA----------TG------------C-G--TTTTCTGATAA-TCAGAAATC--AT--T-TTTTTTGATATCA-GAAAAT-----------CGAATTTCTG--ATATCAAAAAA-TN-ATTTT-CTGATATCA-----------AAAATT-CG-ATTT----TCTGATATCA-AAAATT----TTATT--TAT----ATATCG--AATTATTTT--CTGATATCAAAAA----TT--A---ATTTTCTNATA-TCAGAAAATCATCTGAAT-----GAT-TAATTTTT-GATATCAAAA-AATCGA-TTTT-TTTGATATNAG-AAAATAAGTAACATTTTTNTTGTGTCAGACAAATAGCAATTATTCGATTTGTTTNACATCAGAAAATCATTTTCTGACATAAAAATAAATCAACTGGAATTT---CTTATCTGATANANTTANTTTTTT--TTTTTTTTTTTCTGATAATCAAACAATTCANAAAAATGGCTGCGAAAGTNCGTTTAAATTAGATNAANTTCNCACCCGGNTTAAAAATTATGTGTAGTAAACATATTGCAC-AGGCAGTAT------TGTAT----------TTAAG------TTATAACACTTAGCTTCAAATGACA--CCGAATGATACCCCC---AAGAATGTCGGCCTTTTGAGCTCCCAAA
Reference ( family-2859 ) : TATGAGG-CGCNG-TTTTAGTATTTTTGA----------TG------------C-G--TTTTCTGATA--TCAGAAA----AT--T-TTTTTTGATATCA-GAAAAT-----------CGAATTTCTG--ATATCAAAAAA-TC-ATTTT-CTGATATCA-----------AAAATT-CG-ATTT----TCTGATATCA-AAAATT----TTATT--TAT----ATATCG--AATTATTTT--CTGATATCAAAAA----TT--A---ATTTTCTGATA-TCAGAAAATCATTTGAAT-----GATATAATTTTT-GATATCAAAA-AATCGA-TTTT-TTTGATATNAG-AAAATAAGTAACATTTTTNTTGTGTCAGACAAATAGCAATTATTCGATTTGTTTNACATCAGAAAATCATTTTCTGACATAAAAATAAATCAACTGGAATTT---CTTATCTGATANANTTANTTTTTTTT--TTTTTTTTTCTGATAATCAAACAATTCANAAAAATGGCTGCGAAAGTNCGTTTAAATTAGATNAANTTCNCACCCGGNTTAAAAATTATGTGTAGTAAACATATTGCAC-AGGCAGTAT------TGTAT----------TTAAG------TTATAACACTTAGCTTCAAATGACA--CCGAATGATACCCCC---AAGAATGTCGGCCTTTTGAGCTCCCAAA
gi|1 : TATGAGGGCGCTG-TTT-AGTATTTTTGAATGTATTTTCTGAATATCAAAAATC-A--TTTTCTGATAA-TCCGAAATCCGAT--T-TTCCT-GATATCAAGAAAATAAGAAATATTTTGAATTTTTGGAATATCAGAAAA-TA-GTTTTTCTGATATCA-----------AAAATT-TA---TT----TCTGAT-TCA-GAAATTCA--TTTTT--TA-----ATAT----AATT-TTATAATTGATATCAGAAAATATTT--AGG-ATTTTCTGATACTCAAAA---------------------TAATTCTTCGATATCAAAATAATCGA-TTTTTTTTGATACAAGAAAAATAAGTAA
gi|1 : cACTGGATTTT---C----CTGATATAA--AATTTT----TTTTTTTTTTTCTGATAATCAAA-AATTCAC-AAAATGGCTGCGAAAGTTCATTTAAATTAGATGAAATTCTCACCCGGGTT-AAAATTATGTGTAATATGCATATTGCACAAGGCAGTAT------TGTAT----------TTAAG-------TATAACACTTAG-TTCA------------AATGATAACCCC---AATAATGTAGGCCTTTTGAGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactggattttcctgatataaaatttttttttttttttctgataatcaaaaattcacaaaatggctgcgaaagttcatttaaattagatgaaattctcacccgggttaaaattatgtgtaatatgcatattgcacaaggcagtattgtatttaagtataacacttagttcaaatgataaccccaataatgtaggccttttgagccctaga
gi|11 : ctatgagggcgctgtttagtatttttgaatgtattttctgaatatcaaaaatcattttctgataatccgaaatccgattttcctgatatcaagaaaataagaaatattttgaatttttggaatatcagaaaatagtttttctgatatcaaaaatttatttctgattcagaaattcattttttaatataattttataattgatatcagaaaatatttaggattttctgatactcaaaataattcttcgatatcaaaataatcgattttttttgatacaagaaaaataagtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAAT-----------CGAATTTCTG--ATAATAAAAAA-TC-ATTTT-ATGATATCA-----------AAATTT-CG-ATGT----TCTGATATCATAAAATA----TTACT--TAT----ATTCTG--AA-----TT--TTAA----AGAAA----TTTGA---TTTTTTTTATA-TCAGAAAATCATTTtaga
gi|13 : a-AATCGAATTTT-TTTTACATCAT-ATAATAAGTAACATTTTTTTTATATCAGA-AAATA-CAATT-TTCGATTTGTTTGATATCAGAAAATCATTTTCTGACATAAAA--AAATCAACTGG-ATTTAAACTTAtct
gi|14 : tTATGAGG-CGCAG-TTTTAGTATTTTTGA-----------G------------CTA--TTTTCTGATA--TTAAAAA----ATAAT-TTTCTTGATATAA-AAAAAT-----------CGAATTTCTG--ATAACAAAAAA-TA-A-ATT-CTAATATCA-----------GAA
gi|15 : tCCGGATTAAAAATTATGTGTA-TAAACATATAGCAC-AGGCAGTATAAGCTATGTATGTTTGTATACTTAAGTAATAATTATAACACTTAGCTTCAAATGATAACCCCAAT
gi|18 : A-----------GAGATTGCA-ATTC----T-TGATATCA-GAAATC----TT-TT--TTT----ATATCA--ATTTTTTCC--CTGATAT
gi|2 : CCCCC---CAGAATGTCG-CCTTTTGAGCTCCCAAAga
gi|20 : taaggtacttaacttcaaattatatcccccccccccccccACTTAGCTTTAAATGACA--CC--------CCCAC---AAGAATGTCGGTCTTTTgaatatgcaatgcaaatatattttattttactactgttcccttctacgataatattatctacaaaagcatgtataacatgactgtattcattgcctcttgtctctgaaaaactgcaacaaaacatggcttgactgctcgatttcacgtttcacaccacgaaatgctttgtagtgatactgcactgattgagtgcaggattttcattgtctggcatgctcatctaaaattacgtttggaaatcttgggagttatttatagataaatgaagctgcaagaatggcacaggaaaattgttgttattaaatgcacagggaagatttgttgttattaaaaagattggagataaatttaatataatattgctttgcaaaaatgatggtttttaatggttacattggccataattgatctaacttagttacaaacattaggaataggaggactacaaacatagggagaggggggggggggggcttagttttacccatctccccctggttt
gi|3 : caaattTATGAGG-CGCAA-TTTTAGTATTTTTGA----------TG------------C-G--TTTTCTGATA--TCAGAAA----AT--T-CTTTTTGATGTCA-GAAAAT-----------GGAATTTGTG--ATATCACAAAA-TC-ACTTT-CTGATATCA-----------AACATT-CGCATTTATTATCTGATA----ACAATT----TTATTGATATG---ATATCAGAAATTATTTA--CTGATATCAAAAA----T---A---ATTTTCTGAAA-TCAGAAAATGATCTGAATCAAATGATATAACTATT-AATATCAAAT-AATAAA-TTTT-TT-GATATAAG-AAAATACGTAACATTTTTG--GTGTCA-ACAAATAG-AATTATTCGATTT-TTTCACATCAGAAAATCATTTT-TGATATAAAAATAAATCAACTAGAATTT---CTTATCTGATAAATTTATTTTTTT----------------ATA-TCAAACA-TTCAAAAAAATGGCTACAAAAATGTGTTTAA--TAAATCAATTTTATAT---GCTTAGAAATTATGTGC-GTAAACATATTGGAC-AG-----AT------TGCAT----------CGAAG------TTTTAACACTTAGCT---AAT------TCAAATGATAACCTC---AAGAATGTCAGTCTTTTGAGC-CCCAAAt
gi|4 : CTTAGCTTCAAATGACA--TCGAATGATACCCCCCG-AAGAATGTCGGACTTTTGAGCTCCCAAAa
gi|5 : aaggtcATATTTAGCTTCAAATGACA--CCGAATGATACCCCCCATAAGAATGTCGGCCTTCTTAGCTCCCAAAgaataggcaatgcaaaagtacttacttccatatttttctacgataatttatctacaaatccatgtatagcaattgcctcttgtgtccgtaaaatgcaaaaaaaacatgacgcaactgctcaatatcccatttctcaccaagaagtgttgtgtagtgataccgcaccgatgaagagcgtgattttcattggctagtgcgctcgtctaaaattacgttttgaaatcttgggagttgaagccacagggaagaatgttattaataaaaattgctggcaaaatgatggttttaatggtgaccattggccataattgattttatttgatattgtttacttagtaacaaacattgggaaaagggggggactacaattaagaaggtgaggggggcttagatcgattcacccgtcttcccatgc
gi|5 : caagATTTAGCTTCAAATGACA--CCGAgaatatgcaatacaaatgcatttactaccgttttcttctgcgataatttaattaaaagactgcattcattgtctcttatctcccaaaactgcaacaaaacagggctcgactgctcgatttcccatatgctttgtactgataccgcacagaataagcacgcgattttgattggctgcacgctcatcgaaaattacgtttggacattttatggaaagagagtgtacaacaaaatcggtgtcatttgaagctaaatacct
gi|6 : caagatatttagcttcaaatgacaccgaatgataccccccataagaatgtcggccttcttagctcccaaagaatatgcaatacaaatgcatttactaccgttttcttctgcgataatttaattaaaagactgcattcattgtctcttatctcccaaaactgcaacaaaacagggctcgactgctcgatttcccatatgctttgtactgataccgcacagaataagcacgcgattttgattggctgcacgctcatcgaaaattacgtttggacattttatggaaagagagtgtacaacaaaaATGAGG-TGCCGATTTTGGT--TTTTGAGG--------TA------------T-G--TTTTCTGATA--TCAGAAATC--AT--T-TTTTTAGTCATCA-AAAAAT-----------TGAATAG-TG--AT-TCAAAAAAATG-ATTTT-CTG-TATCA-----------AAAATTTCG-ATTT----TCTGATATCA-AAAATC----TTA-------------------ACTTATTTT--CTGATATTAAGGAGAT-TT--G---ATTTTTTTATA-TT-GAAGTTCATTT----------------TTTTT-TA-ATCAATA-AACTGG-TTTT-CTTGATATCAG-AAAacct
gi|7 : cacacaatatgAGG-CGCCG-TT--AGTATTTTTGA----------TT------------T-AAACTTTATGATAACTCA-AAA----AT--AATTTTTTGATATCA-GAAATT-----------CCAATTCTTG--ATATCAGAAA--TC-ATTTT-TT-ATATCAATTTTCCCCTGAAAATA-TG-ATTT----TCTGATAT-A-AAA--------TA-------------ATCG--AA----TTT--ATGATATAAAAAATG--TT--ACTCATTTTCTTATA-TCAcatt
gi|8 : ACTTAGCCTGAGATGATA--CC--------CCACT---GAGAAGGCCTGTCTCTTGAGCTTCCA
gi|9 : acaaggtTCTA--ATATCAAAAGT-TTTATTTT-CTGATATCA-----------AAAAAT-CG-ATTA----CCTGAAATAA-AGAATTCTTCTTTTT--TATCAGAAAATCA--AAATATTTT--CTGATATCAAAAA----TT--G---AATTTCTGAAG-TAAGAAAATCG-CTAAAT-----GAT----TTTCT-GATATCAAAA-AATCAA-gggagtatgtgatgaaaatgtatttacacaataatttatctacaaatctatgtatggtatgacggcatttattgtcttttctagaaaaactgcaatagaacatggctttaca
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAAACGATTGGAGATGAATTCAAAATAGAAGGCAAAATTACGATTTTATTAGTGACCATTGGCCATAATTGATCATGTTTGATATTACTTAGCTAGTAACATTAGGAAAAGAAAACAATACCACAAAGATAAAGGAGACTCCACCCTTCTCCCCCAT
Unaligned ( gi|12 ): TTCAAAATGATTATTTTAATGGTGATCATTGACCATGATTGATCTTATTTAGTTAGTAACATTGGGTTAAGAACAACATACTACAAAAAATGAGAAGGAAGAGACGGGGGTCACCCCTCTCGTCCATGTT
Unaligned ( gi|16 ): TACTGACACTGTGCACAGATTTGATTGGCTGGCATGCACTTCTGAAATTATGTTTTGAAATCTTGGAATTTATCTAT
Unaligned ( gi|17 ): CAACAAGGTACTTAGCCTGAGATGATACACCACACTGAGAAGGCCTGTCTTCTTTGAGCTTCCAGGGAG
Unaligned ( gi|19 ): TATCTACAAAACAAGACATAACACGACTGCATTTATTGCCACTTATCTCCG
Alignments
lowQualScore : 111111111111111111
lowQualScore : 1 111 222222 2 1 4444444444444444444444 11111 1111111111111 555555555555555555555555555555 2222222 1111 99999999999999999999999999999999 1 1 1 111 222 33 1 1 1 11 222 111 111111111111111111 1 222 11 11 11 1 333333 7777777777777777777777 1 111
lowQualScore : 0 000 3 3 999999 2 55 3 66 0 0 5 5 5 7777777777777777777777 77 5 5 5 22222 5 6666666666666 888888888888888888888888888888 999 1 22 4444444 3 4444 1 5 99 0 22222222222222222222222222222222 1 0 6 6 3 1 0 999 111 00 5 5 1 5 88 7 333 8888 1 999 1 111111111111111111 5 111 66 1 88 1 1 1 6 1 7 99 3 6 888888 1111111111111111111111 0 66 0 777 0 1
lowQualScore : . ... . . ...... . .. . .. . . . . . ...................... .. . . . ..... . ............. .............................. ... . .. ....... . .... . . .. . ................................ . . . . . . . ... ... .. . . . . .. . ... .... . ... . .................. . ... .. . .. . . . . . . .. . . ...... ...................... . .. . ... . .
lowQualScore : 0 555 2 2 000000 0 88 2 88 0 8 7 7 7 1111111111111111111111 99 7 7 7 77777 7 6666666666666 111111111111111111111111111111 666 4 44 2222222 5 2222 0 2 22 7 77777777777777777777777777777777 4 6 7 0 2 0 0 555 000 00 5 0 0 0 55 3 333 3333 0 555 0 000000000000000000 5 555 55 0 55 0 0 0 7 0 3 33 3 7 333333 0000000000000000000000 2 99 8 999 4 7
consensus : TATGAGG-CGCNG-TTTTAGTATTTTTGAG-TGC-GTTTTCTGATA-TCAGAAATCATTTTTTTTGATA-TCAGAAAATCGAATTTC-TGATATC-AA-AAAAT----N-A------T--------TTTCTG--ATATCAGAAA-TT-CG-ATTT----TCTGATATCA-AAA------ATT----TT---------ATT--TAT----ATATC-G--AA--TTATTTTCTGATATCAAAAA---TT--AATTTT----CTGATATCAGAAAATCA--TTT-GAA-----T-----GATA-------TAATT-TTTGATATCAAAA-AATCGA-TTTTTTTGATATNAG-AAAATAAGTAACATTTTTNTTGTGTCAGACAAATAGCAATTATTCGATTTGTTTNACATCAGAAAATCATTTTCTGACATAAAAATAAATCAACTGGAATTT---CTTATCTGATANANTTANTTTTTT--TTTTTTTTTTTCTGATAATCAAACAATTCANAAAAATGGCTGCGAAAGTNCGTTTAAATTAGATNAANTTCNCACCCGGNTTAAAAATTATGTGTAGTAAACATATTGCAC-AGGCAGTAT------TGTAT----------TTAAG------TTATAACACTTAGCTTCAAATGACA--CCGAATGATACCCCC---AAGAATGTCGGCCTTTTGAGCTCCCAAA
Reference ( family-2859 ) : TATGAGG-CGCCG-TTTTAGTATTTTTGA--TGC-GTTTTCTGATAATCAGAAATCATTTTTTTTGATA-TCAGAAAATCGAATTTC-TGATATC-AA-AAAAT----N-A------T--------TTTCTG--ATATCAAAAA-TT-CG-ATTT----TCTGATATCA-AAA------ATT----TT---------ATT--TAT----ATATC-G--AA--TTATTTTCTGATATCAAAAA---TT--AATTTT----CTNATATCAGAAAATCA--TCT-GAA-----T-----GAT--------TAATT-TTTGATATCAAAA-AATCGA-TTTTTTTGATATNAG-AAAATAAGTAACATTTTTNTTGTGTCAGACAAATAGCAATTATTCGATTTGTTTNACATCAGAAAATCATTTTCTGACATAAAAATAAATCAACTGGAATTT---CTTATCTGATANANTTANTTTTTTTT--TTTTTTTTTCTGATAATCAAACAATTCANAAAAATGGCTGCGAAAGTNCGTTTAAATTAGATNAANTTCNCACCCGGNTTAAAAATTATGTGTAGTAAACATATTGCAC-AGGCAGTAT------TGTAT----------TTAAG------TTATAACACTTAGCTTCAAATGACA--CCGAATGATACCCCC---AAGAATGTCGGCCTTTTGAGCTCCCAAA
gi|1 : TATGAGGGCGCTG-TTT-AGTATTTTTGAA-TGT-ATTTTCTGAATATCAAAAATCATTTTCT--GATAATCCGAAATCCGATTTTCCTGATATC-AAGAAAATAAGAA-A------TATTTTGAATTTTTGGAATATCAGAAA-AT-AG-TTTT----TCTGATATCA-AAA------A-T----TT---------ATT--TCTG---AT-TCAG--AAATTCATTTTTTAATA-----------T--AATTTTATAATTGATATCAGAAAAT-A--TTTAGGATTTTCT-----GATACTCAAAATAATTCTTCGATATCAAAATAATCGATTTTTTTTGATACAAGAAAAATAAGTAA
gi|1 : cACTGGATTTT---C----CTGATATAA--AATTTT----TTTTTTTTTTTCTGATAATCAAA-AATTCAC-AAAATGGCTGCGAAAGTTCATTTAAATTAGATGAAATTCTCACCCGGGTT-AAAATTATGTGTAATATGCATATTGCACAAGGCAGTAT------TGTAT----------TTAAG-------TATAACACTTAG-TTCA------------AATGATAACCCC---AATAATGTAGGCCTTTTGAGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactggattttcctgatataaaatttttttttttttttctgataatcaaaaattcacaaaatggctgcgaaagttcatttaaattagatgaaattctcacccgggttaaaattatgtgtaatatgcatattgcacaaggcagtattgtatttaagtataacacttagttcaaatgataaccccaataatgtaggccttttgagccctaga
gi|11 : ctatgagggcgctgtttagtatttttgaatgtattttctgaatatcaaaaatcattttctgataatccgaaatccgattttcctgatatcaagaaaataagaaatattttgaatttttggaatatcagaaaatagtttttctgatatcaaaaatttatttctgattcagaaattcattttttaatataattttataattgatatcagaaaatatttaggattttctgatactcaaaataattcttcgatatcaaaataatcgattttttttgatacaagaaaaataagtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAATCGAATTTC-TGATAAT-AA-AAAAT----C-A------T--------TTTATG--ATATCAAAAT-TT-CG-ATGT----TCTGATATCATAAA------ATA----TT---------ACT--TAT----ATTCT-G--AA-------TTTTAA----AGAAA---TTTGATTTTT----TTTATATCAGAAAATCA--TTT-taga
gi|13 : a-AATCGAATTTTTTTTACATCAT-ATAATAAGTAACATTTTTTTTATATCAGA-AAATA-CAATT-TTCGATTTGTTTGATATCAGAAAATCATTTTCTGACATAAAA--AAATCAACTGG-ATTTAAACTTAtct
gi|14 : tTATGAGG-CGCAG-TTTTAGTATTTTTGA---GCTATTTTCTGATATTAAAAAATAA-TTTTCTTGATA-TAAAAAAATCGAATTTC-TGATAAC-AA-AAAAT----A-A---------------ATTCTA--ATATCAGAA
gi|15 : tCCGGATTAAAAATTATGTGTA-TAAACATATAGCAC-AGGCAGTATAAGCTATGTATGTTTGTATACTTAAGTAATAATTATAACACTTAGCTTCAAATGATAACCCCAAT
gi|18 : AGAGA-TTGCA-ATTC----T-TGATATCA-GAA------ATC----TT----------TT--TTT----ATATC-A--AT--TTTTTCCCTGATAT
gi|2 : CCCCC---CAGAATGTCG-CCTTTTGAGCTCCCAAAga
gi|20 : taaggtacttaacttcaaattatatcccccccccccccccACTTAGCTTTAAATGACA--CC--------CCCAC---AAGAATGTCGGTCTTTTgaatatgcaatgcaaatatattttattttactactgttcccttctacgataatattatctacaaaagcatgtataacatgactgtattcattgcctcttgtctctgaaaaactgcaacaaaacatggcttgactgctcgatttcacgtttcacaccacgaaatgctttgtagtgatactgcactgattgagtgcaggattttcattgtctggcatgctcatctaaaattacgtttggaaatcttgggagttatttatagataaatgaagctgcaagaatggcacaggaaaattgttgttattaaatgcacagggaagatttgttgttattaaaaagattggagataaatttaatataatattgctttgcaaaaatgatggtttttaatggttacattggccataattgatctaacttagttacaaacattaggaataggaggactacaaacatagggagaggggggggggggggcttagttttacccatctccccctggttt
gi|3 : caaattTATGAGG-CGCAA-TTTTAGTATTTTTGA--TGC-GTTTTCTGATA-TCAGAAA--ATTCTTTTTGATG-TCAGAAAATGGAATTTG-TGATATC-AC-AAAAT----C-A------C--------TTTCTG--ATATCAAACA-TT-CGCATTTATTATCTGATA----ACA------ATT----TT---------ATTGATATG---ATATC-AGAAA--TTATTTACTGATATCAAAAA---T---AATTTT----CTGAAATCAGAAAATGA--TCT-GAA-----TCAAATGATA-------TAACT-ATTAATATCAAAT-AATAAA-TTTTTT-GATATAAG-AAAATACGTAACATTTTTG--GTGTCA-ACAAATAG-AATTATTCGATTT-TTTCACATCAGAAAATCATTTT-TGATATAAAAATAAATCAACTAGAATTT---CTTATCTGATAAATTTATTTTTTT----------------ATA-TCAAACA-TTCAAAAAAATGGCTACAAAAATGTGTTTAA--TAAATCAATTTTATAT---GCTTAGAAATTATGTGC-GTAAACATATTGGAC-AG-----AT------TGCAT----------CGAAG------TTTTAACACTTAGCT---AAT------TCAAATGATAACCTC---AAGAATGTCAGTCTTTTGAGC-CCCAAAt
gi|4 : CTTAGCTTCAAATGACA--TCGAATGATACCCCCCG-AAGAATGTCGGACTTTTGAGCTCCCAAAa
gi|5 : aaggtcATATTTAGCTTCAAATGACA--CCGAATGATACCCCCCATAAGAATGTCGGCCTTCTTAGCTCCCAAAgaataggcaatgcaaaagtacttacttccatatttttctacgataatttatctacaaatccatgtatagcaattgcctcttgtgtccgtaaaatgcaaaaaaaacatgacgcaactgctcaatatcccatttctcaccaagaagtgttgtgtagtgataccgcaccgatgaagagcgtgattttcattggctagtgcgctcgtctaaaattacgttttgaaatcttgggagttgaagccacagggaagaatgttattaataaaaattgctggcaaaatgatggttttaatggtgaccattggccataattgattttatttgatattgtttacttagtaacaaacattgggaaaagggggggactacaattaagaaggtgaggggggcttagatcgattcacccgtcttcccatgc
gi|5 : caagATTTAGCTTCAAATGACA--CCGAgaatatgcaatacaaatgcatttactaccgttttcttctgcgataatttaattaaaagactgcattcattgtctcttatctcccaaaactgcaacaaaacagggctcgactgctcgatttcccatatgctttgtactgataccgcacagaataagcacgcgattttgattggctgcacgctcatcgaaaattacgtttggacattttatggaaagagagtgtacaacaaaatcggtgtcatttgaagctaaatacct
gi|6 : caagatatttagcttcaaatgacaccgaatgataccccccataagaatgtcggccttcttagctcccaaagaatatgcaatacaaatgcatttactaccgttttcttctgcgataatttaattaaaagactgcattcattgtctcttatctcccaaaactgcaacaaaacagggctcgactgctcgatttcccatatgctttgtactgataccgcacagaataagcacgcgattttgattggctgcacgctcatcgaaaattacgtttggacattttatggaaagagagtgtacaacaaaaATGAGG-TGCCGATTTTGGT--TTTTGAGGTAT-GTTTTCTGATA-TCAGAAATCATTTTTTTAGTCA-TCAAAAAATTGAA-TAG-TGAT-TCAAA-AAAAT----G-A------T--------TTTCTG---TATCAAAAATTT-CG-ATTT----TCTGATATCA-AAA------ATC----TT---------A--------------------AC--TTATTTTCTGATATTAAGGAGATTT--GATTTT----TTTATATT-GAAGTTCA--TTT-----------------------------TT-TTTTA-ATCAATA-AACTGG-TTTTCTTGATATCAG-AAAacct
gi|7 : cacacaatatg-TGATATA-AG-AAAAT----G-AGTAACAT--------TTTTT---ATATCATAAA-TT-CG-ATTA----TTTTATATCA-GAAAATCATATT----TTCAGGGGAAAATT--GAT----ATAAA-A--AA--TGA-TTTCTGATATCAAGAA---TTGGAA-TTT----CTGATATCAAAAAATTATTTTT-GAG-----T-----TATCA------TAAAG-TTTAA-ATCAAAA-Acatt
gi|8 : aggcgccgttagtaACTTAGCCTGAGATGATA--CC--------CCACT---GAGAAGGCCTGTCTCTTGAGCTTCCA
gi|9 : acaaggtTC-TAATATC-AA-AAGTT----TTA------T--------TTTCTG--ATATCAAAAA-AT-CG-ATTA----CCTGAAATAA-AGA------ATTCTTCTT---------TTT--TATCAGAAAATC-A--AA--ATATTTTCTGATATCAAAAA---TT--GAATTT----CTGAAGTAAGAAAATCG---CT-AAA-----T-----GAT-----------TT-TCTGATATCAAAA-AATCAA-gggagtatgtgatgaaaatgtatttacacaataatttatctacaaatctatgtatggtatgacggcatttattgtcttttctagaaaaactgcaatagaacatggctttaca
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAAACGATTGGAGATGAATTCAAAATAGAAGGCAAAATTACGATTTTATTAGTGACCATTGGCCATAATTGATCATGTTTGATATTACTTAGCTAGTAACATTAGGAAAAGAAAACAATACCACAAAGATAAAGGAGACTCCACCCTTCTCCCCCAT
Unaligned ( gi|12 ): TTCAAAATGATTATTTTAATGGTGATCATTGACCATGATTGATCTTATTTAGTTAGTAACATTGGGTTAAGAACAACATACTACAAAAAATGAGAAGGAAGAGACGGGGGTCACCCCTCTCGTCCATGTT
Unaligned ( gi|16 ): TACTGACACTGTGCACAGATTTGATTGGCTGGCATGCACTTCTGAAATTATGTTTTGAAATCTTGGAATTTATCTAT
Unaligned ( gi|17 ): CAACAAGGTACTTAGCCTGAGATGATACACCACACTGAGAAGGCCTGTCTTCTTTGAGCTTCCAGGGAG
Unaligned ( gi|19 ): TATCTACAAAACAAGACATAACACGACTGCATTTATTGCCACTTATCTCCG
Alignments
lowQualScore : 111111111111111111
lowQualScore : 999999999999999999999999999 11 2222 33333333333 222222222222 1111 66666666666666666666666666666666 555555555555 8888888888888888888 11 1 1 111 222 33 1 1 1 11 222 111 111111111111111111 1 222 11 11 11 1 333333 7777777777777777777777 1 111
lowQualScore : 8 1 8 66 0 444444444444444444444444444 99 0000 55 6 8 11111111111 1 77 5 66 0 5 555555555555 5 5 5 2222 4 5 11111111111111111111111111111111 77 1 111111111111 2 6 44 2222222222222222222 1 00 3 8 8 0 3 1 0 999 111 00 5 5 1 5 88 7 333 8888 1 999 1 111111111111111111 5 111 66 1 88 1 1 1 6 1 7 99 3 6 888888 1111111111111111111111 0 66 0 777 0 1
lowQualScore : . . . .. . ........................... .. .... .. . . ........... . .. . .. . . ............ . . . .... . . ................................ .. . ............ . . .. ................... . .. . . . . . . . ... ... .. . . . . .. . ... .... . ... . .................. . ... .. . .. . . . . . . .. . . ...... ...................... . .. . ... . .
lowQualScore : 0 0 0 44 8 000000000000000000000000000 00 2222 66 0 0 77777777777 7 99 7 77 1 7 888888888888 7 7 7 1111 3 7 66666666666666666666666666666666 99 0 222222222222 5 7 88 7777777777777777777 2 22 2 0 0 0 2 0 0 555 000 00 5 0 0 0 55 3 333 3333 0 555 0 000000000000000000 5 555 55 0 55 0 0 0 7 0 3 33 3 7 333333 0000000000000000000000 2 99 8 999 4 7
consensus : TATGAGG-CGCCG-TTTTAGTATTTTTGAG-T-G---------------------CGTTTTCTGATAA-TCAGAAATC--ATTTTTCTTGATATCA-GAAAAT-----------CGAATTTCTG--ATATC-AAAAAATN-ATTTT-CTGATATCA-----------AAAA-TT-CG-ATTT----TCTGATATCA-AAAATT----TTATT--TAT----ATATCG--AATTATTTT--CTGATATCAAAAA----TT--A---ATTTTCTNATA-TCAGAAAATCATCTGAAT-----GAT-TAATTTTT-GATATCAAAA-AATCGA-TTTT-TTTGATATNAG-AAAATAAGTAACATTTTTNTTGTGTCAGACAAATAGCAATTATTCGATTTGTTTNACATCAGAAAATCATTTTCTGACATAAAAATAAATCAACTGGAATTT---CTTATCTGATANANTTANTTTTTT--TTTTTTTTTTTCTGATAATCAAACAATTCANAAAAATGGCTGCGAAAGTNCGTTTAAATTAGATNAANTTCNCACCCGGNTTAAAAATTATGTGTAGTAAACATATTGCAC-AGGCAGTAT------TGTAT----------TTAAG------TTATAACACTTAGCTTCAAATGACA--CCGAATGATACCCCC---AAGAATGTCGGCCTTTTGAGCTCCCAAA
Reference ( family-2859 ) : TATGAGG-CGCNG-TTTTAGTATTTTTGAG-T-G---------------------CGTTTTCTGATA--TCAGAAATC--ATTTTTTTTGATATCA-GAAAAT-----------CGAATTTCTG--ATATC-AAAAAATN-ATTTT-CTGATATCA-----------GAAA-TT-CG-ATTT----TCTGATATCA-AAAATT----TTATT--TAT----ATATCG--AATTATTTT--CTGATATCAAAAA----TT--A---ATTTTCTGATA-TCAGAAAATCATTTGAAT-----GATATAATTTTT-GATATCAAAA-AATCGA-TTTT-TTTGATATNAG-AAAATAAGTAACATTTTTNTTGTGTCAGACAAATAGCAATTATTCGATTTGTTTNACATCAGAAAATCATTTTCTGACATAAAAATAAATCAACTGGAATTT---CTTATCTGATANANTTANTTTTTTTT--TTTTTTTTTCTGATAATCAAACAATTCANAAAAATGGCTGCGAAAGTNCGTTTAAATTAGATNAANTTCNCACCCGGNTTAAAAATTATGTGTAGTAAACATATTGCAC-AGGCAGTAT------TGTAT----------TTAAG------TTATAACACTTAGCTTCAAATGACA--CCGAATGATACCCCC---AAGAATGTCGGCCTTTTGAGCTCCCAAA
gi|1 : TATGAGGGCGCTG-TTT-AGTATTTTTGAA-T-GTATTTTCTGAATATCAAAAATCATTTTCTGATAA-TCCGAAATCCGATTTTCCT-GATATCAAGAAAATAAGAAATATTTTGAATTTTTGGAATATC-AGAAAATA-GTTTTTCTGATATCA-----------AAAA-TT-TA---TT----TCTGAT-TCA-GAAATTCA--TTTTT--TA-----ATAT----AATT-TTATAATTGATATCAGAAAATATTT--AGG-ATTTTCTGATACTCAAAA---------------------TAATTCTTCGATATCAAAATAATCGA-TTTTTTTTGATACAAGAAAAATAAGTAA
gi|1 : cACTGGATTTT---C----CTGATATAA--AATTTT----TTTTTTTTTTTCTGATAATCAAA-AATTCAC-AAAATGGCTGCGAAAGTTCATTTAAATTAGATGAAATTCTCACCCGGGTT-AAAATTATGTGTAATATGCATATTGCACAAGGCAGTAT------TGTAT----------TTAAG-------TATAACACTTAG-TTCA------------AATGATAACCCC---AATAATGTAGGCCTTTTGAGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactggattttcctgatataaaatttttttttttttttctgataatcaaaaattcacaaaatggctgcgaaagttcatttaaattagatgaaattctcacccgggttaaaattatgtgtaatatgcatattgcacaaggcagtattgtatttaagtataacacttagttcaaatgataaccccaataatgtaggccttttgagccctaga
gi|11 : ctatgagggcgctgtttagtatttttgaatgtattttctgaatatcaaaaatcattttctgataatccgaaatccgattttcctgatatcaagaaaataagaaatattttgaatttttggaatatcagaaaatagtttttctgatatcaaaaatttatttctgattcagaaattcattttttaatataattttataattgatatcagaaaatatttaggattttctgatactcaaaataattcttcgatatcaaaataatcgattttttttgatacaagaaaaataagtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAAT-----------CGAATTTCTG--ATAAT-AAAAAATC-ATTTT-ATGATATCA-----------AAAT-TT-CG-ATGT----TCTGATATCATAAAATA----TTACT--TAT----ATTCTG--AA-----TT--TTAA----AGAAA----TTTGA---TTTTTTTTATA-TCAGAAAATCATTTtaga
gi|13 : a-AATCGAATTTT-TTTTACATCAT-ATAATAAGTAACATTTTTTTTATATCAGA-AAATA-CAATT-TTCGATTTGTTTGATATCAGAAAATCATTTTCTGACATAAAA--AAATCAACTGG-ATTTAAACTTAtct
gi|14 : tTATGAGG-CGCAG-TTTTAGTATTTTTGAG-C-----------------------TATTTTCTGATA--TTAAAAAAT--AATTTTCTTGATATAA-AAAAAT-----------CGAATTTCTG--ATAAC-AAAAAATA-A-ATT-CTAATATCA-----------GAA
gi|15 : tCCGGATTAAAAATTATGTGTA-TAAACATATAGCAC-AGGCAGTATAAGCTATGTATGTTTGTATACTTAAGTAATAATTATAACACTTAGCTTCAAATGATAACCCCAAT
gi|18 : A-----------GAGA-TTGCA-ATTC----T-TGATATCA-GAAATC----TT-TT--TTT----ATATCA--ATTTTTTCC--CTGATAT
gi|2 : CCCCC---CAGAATGTCG-CCTTTTGAGCTCCCAAAga
gi|20 : taaggtacttaacttcaaattatatcccccccccccccccACTTAGCTTTAAATGACA--CC--------CCCAC---AAGAATGTCGGTCTTTTgaatatgcaatgcaaatatattttattttactactgttcccttctacgataatattatctacaaaagcatgtataacatgactgtattcattgcctcttgtctctgaaaaactgcaacaaaacatggcttgactgctcgatttcacgtttcacaccacgaaatgctttgtagtgatactgcactgattgagtgcaggattttcattgtctggcatgctcatctaaaattacgtttggaaatcttgggagttatttatagataaatgaagctgcaagaatggcacaggaaaattgttgttattaaatgcacagggaagatttgttgttattaaaaagattggagataaatttaatataatattgctttgcaaaaatgatggtttttaatggttacattggccataattgatctaacttagttacaaacattaggaataggaggactacaaacatagggagaggggggggggggggcttagttttacccatctccccctggttt
gi|3 : caaattTATGAGG-CGCAA-TTTTAGTATTTTTGA--T-G---------------------CGTTTTCTGATA--TCAGAAA----ATTCTTTTTGATGTCA-GAAAAT-----------GGAATTTGTG--ATATC-ACAAAATC-ACTTT-CTGATATCA-----------AACA-TT-CGCATTTATTATCTGATA----ACAATT----TTATTGATATG---ATATCAGAAATTATTTA--CTGATATCAAAAA----T---A---ATTTTCTGAAA-TCAGAAAATGATCTGAATCAAATGATATAACTATT-AATATCAAAT-AATAAA-TTTT-TT-GATATAAG-AAAATACGTAACATTTTTG--GTGTCA-ACAAATAG-AATTATTCGATTT-TTTCACATCAGAAAATCATTTT-TGATATAAAAATAAATCAACTAGAATTT---CTTATCTGATAAATTTATTTTTTT----------------ATA-TCAAACA-TTCAAAAAAATGGCTACAAAAATGTGTTTAA--TAAATCAATTTTATAT---GCTTAGAAATTATGTGC-GTAAACATATTGGAC-AG-----AT------TGCAT----------CGAAG------TTTTAACACTTAGCT---AAT------TCAAATGATAACCTC---AAGAATGTCAGTCTTTTGAGC-CCCAAAt
gi|4 : CTTAGCTTCAAATGACA--TCGAATGATACCCCCCG-AAGAATGTCGGACTTTTGAGCTCCCAAAa
gi|5 : aaggtcATATTTAGCTTCAAATGACA--CCGAATGATACCCCCCATAAGAATGTCGGCCTTCTTAGCTCCCAAAgaataggcaatgcaaaagtacttacttccatatttttctacgataatttatctacaaatccatgtatagcaattgcctcttgtgtccgtaaaatgcaaaaaaaacatgacgcaactgctcaatatcccatttctcaccaagaagtgttgtgtagtgataccgcaccgatgaagagcgtgattttcattggctagtgcgctcgtctaaaattacgttttgaaatcttgggagttgaagccacagggaagaatgttattaataaaaattgctggcaaaatgatggttttaatggtgaccattggccataattgattttatttgatattgtttacttagtaacaaacattgggaaaagggggggactacaattaagaaggtgaggggggcttagatcgattcacccgtcttcccatgc
gi|5 : caagATTTAGCTTCAAATGACA--CCGAgaatatgcaatacaaatgcatttactaccgttttcttctgcgataatttaattaaaagactgcattcattgtctcttatctcccaaaactgcaacaaaacagggctcgactgctcgatttcccatatgctttgtactgataccgcacagaataagcacgcgattttgattggctgcacgctcatcgaaaattacgtttggacattttatggaaagagagtgtacaacaaaatcggtgtcatttgaagctaaatacct
gi|6 : caagatatttagcttcaaatgacaccgaatgataccccccataagaatgtcggccttcttagctcccaaagaatatgcaatacaaatgcatttactaccgttttcttctgcgataatttaattaaaagactgcattcattgtctcttatctcccaaaactgcaacaaaacagggctcgactgctcgatttcccatatgctttgtactgataccgcacagaataagcacgcgattttgattggctgcacgctcatcgaaaattacgtttggacattttatggaaagagagtgtacaacaaaaATGAGG-TGCCGATTTTGGT--TTTTGAGGT-A---------------------TGTTTTCTGATA--TCAGAAATC--ATTTTTTTAGTCATCA-AAAAAT-----------TGAA-TAGTG--AT-TCAAAAAAATG-ATTTT-CTG-TATCA-----------AAAATTT-CG-ATTT----TCTGATATCA-AAAATC----TTA-------------------ACTTATTTT--CTGATATTAAGGAGAT-TT--G---ATTTTTTTATA-TT-GAAGTTCATTT----------------TTTTT-TA-ATCAATA-AACTGG-TTTT-CTTGATATCAG-AAAacct
gi|7 : cacacaatatgAGG-CGCCG-TT--AGTATTTTTGAT-TTA---------------------AACTTTATGATAACTCAAAAATA--ATTTT--TTGATATCA-GAAATT-----------CCAATTCTTG--ATATC--AGAAATC-ATTTT-TT-ATATCAATTTTCCCCTGAAAA-TA-TG-ATTT----TCTGATAT-A-AAA--------TA-------------ATCG--AA----TTT--ATGATATAAAAAATG--TT--ACTCATTTTCTTATA-TCAcatt
gi|8 : ACTTAGCCTGAGATGATA--CC--------CCACT---GAGAAGGCCTGTCTCTTGAGCTTCCA
gi|9 : acaaggtTCTA--ATATC-AAAAGTTTTATTTT-CTGATATCA-----------AAAA-AT-CG-ATTA----CCTGAAATAA-AGAATTCTTCTTTTT--TATCAGAAAATCA--AAATATTTT--CTGATATCAAAAA----TT--G---AATTTCTGAAG-TAAGAAAATCG-CTAAAT-----GAT----TTTCT-GATATCAAAA-AATCAA-gggagtatgtgatgaaaatgtatttacacaataatttatctacaaatctatgtatggtatgacggcatttattgtcttttctagaaaaactgcaatagaacatggctttaca
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAAACGATTGGAGATGAATTCAAAATAGAAGGCAAAATTACGATTTTATTAGTGACCATTGGCCATAATTGATCATGTTTGATATTACTTAGCTAGTAACATTAGGAAAAGAAAACAATACCACAAAGATAAAGGAGACTCCACCCTTCTCCCCCAT
Unaligned ( gi|12 ): TTCAAAATGATTATTTTAATGGTGATCATTGACCATGATTGATCTTATTTAGTTAGTAACATTGGGTTAAGAACAACATACTACAAAAAATGAGAAGGAAGAGACGGGGGTCACCCCTCTCGTCCATGTT
Unaligned ( gi|16 ): TACTGACACTGTGCACAGATTTGATTGGCTGGCATGCACTTCTGAAATTATGTTTTGAAATCTTGGAATTTATCTAT
Unaligned ( gi|17 ): CAACAAGGTACTTAGCCTGAGATGATACACCACACTGAGAAGGCCTGTCTTCTTTGAGCTTCCAGGGAG
Unaligned ( gi|19 ): TATCTACAAAACAAGACATAACACGACTGCATTTATTGCCACTTATCTCCG
Alignments
lowQualScore : 111111111111111111
lowQualScore : 1 111 11111 2 11 1 4444444444444444444444 1 11111 1111111111111 555555555555555555555555555555 2222222 1111 99999999999999999999999999999999 1 1 1 111 222 33 1 1 1 11 222 111 111111111111111111 1 222 11 11 11 1 333333 7777777777777777777777 1 111
lowQualScore : 0 000 3 3 99999 2 55 99 0 99 5 5 7777777777777777777777 77 1 5 22222 5 6666666666666 888888888888888888888888888888 999 1 22 4444444 3 4444 1 5 99 0 22222222222222222222222222222222 1 0 6 6 3 1 0 999 111 00 5 5 1 5 88 7 333 8888 1 999 1 111111111111111111 5 111 66 1 88 1 1 1 6 1 7 99 3 6 888888 1111111111111111111111 0 66 0 777 0 1
lowQualScore : . ... . . ..... . .. .. . .. . . ...................... .. . . ..... . ............. .............................. ... . .. ....... . .... . . .. . ................................ . . . . . . . ... ... .. . . . . .. . ... .... . ... . .................. . ... .. . .. . . . . . . .. . . ...... ...................... . .. . ... . .
lowQualScore : 0 555 2 2 88888 0 88 88 0 22 7 7 1111111111111111111111 99 4 7 77777 7 6666666666666 111111111111111111111111111111 666 4 44 2222222 5 2222 0 2 22 7 77777777777777777777777777777777 4 6 7 0 2 0 0 555 000 00 5 0 0 0 55 3 333 3333 0 555 0 000000000000000000 5 555 55 0 55 0 0 0 7 0 3 33 3 7 333333 0000000000000000000000 2 99 8 999 4 7
consensus : TATGAGG-CGCNG-TTTTAGTATTTTTGAG-TGTGTTTTCTGATA-TCAGAAATCATTTTTTTTGAT-ATCAGAAAATCGAATTT-CTGATATCAA-AAAA-T----N-A------T--------TTTCTG--ATATCAGAAATT-CG-ATTT----TCTGATATCA-AAA------ATT----TT---------ATT--TAT----ATATC-G--AA--TTATTTTCTGATATCAAAAA---TT--AATTTT----CTGATATCAGAAAATCA--TTT-GAA-----T-----GATA-------TAATT-TTTGATATCAAAA-AATCGA-TTTTTTTGATATNAG-AAAATAAGTAACATTTTTNTTGTGTCAGACAAATAGCAATTATTCGATTTGTTTNACATCAGAAAATCATTTTCTGACATAAAAATAAATCAACTGGAATTT---CTTATCTGATANANTTANTTTTTT--TTTTTTTTTTTCTGATAATCAAACAATTCANAAAAATGGCTGCGAAAGTNCGTTTAAATTAGATNAANTTCNCACCCGGNTTAAAAATTATGTGTAGTAAACATATTGCAC-AGGCAGTAT------TGTAT----------TTAAG------TTATAACACTTAGCTTCAAATGACA--CCGAATGATACCCCC---AAGAATGTCGGCCTTTTGAGCTCCCAAA
Reference ( family-2859 ) : TATGAGG-CGCCG-TTTTAGTATTTTTGAG-TGCGTTTTCTGATAATCAGAAATCATTTTTCTTGAT-ATCAGAAAATCGAATTT-CTGATATCAA-AAAA-T----N-A------T--------TTTCTG--ATATCAAAAATT-CG-ATTT----TCTGATATCA-AAA------ATT----TT---------ATT--TAT----ATATC-G--AA--TTATTTTCTGATATCAAAAA---TT--AATTTT----CTNATATCAGAAAATCA--TCT-GAA-----T-----GAT--------TAATT-TTTGATATCAAAA-AATCGA-TTTTTTTGATATNAG-AAAATAAGTAACATTTTTNTTGTGTCAGACAAATAGCAATTATTCGATTTGTTTNACATCAGAAAATCATTTTCTGACATAAAAATAAATCAACTGGAATTT---CTTATCTGATANANTTANTTTTTTTT--TTTTTTTTTCTGATAATCAAACAATTCANAAAAATGGCTGCGAAAGTNCGTTTAAATTAGATNAANTTCNCACCCGGNTTAAAAATTATGTGTAGTAAACATATTGCAC-AGGCAGTAT------TGTAT----------TTAAG------TTATAACACTTAGCTTCAAATGACA--CCGAATGATACCCCC---AAGAATGTCGGCCTTTTGAGCTCCCAAA
gi|1 : TATGAGGGCGCTG-TTT-AGTATTTTTGAA-TGTATTTTCTGAATATCAAAAATCATTTT--CTGATAATCCGAAATCCGATTTTCCTGATATCAAGAAAA-TAAGAA-A------TATTTTGAATTTTTGGAATATCAGAAAAT-AG-TTTT----TCTGATATCA-AAA------A-T----TT---------ATT--TCTG---AT-TCAG--AAATTCATTTTTTAATA-----------T--AATTTTATAATTGATATCAGAAAAT-A--TTTAGGATTTTCT-----GATACTCAAAATAATTCTTCGATATCAAAATAATCGATTTTTTTTGATACAAGAAAAATAAGTAA
gi|1 : cACTGGATTTT---C----CTGATATAA--AATTTT----TTTTTTTTTTTCTGATAATCAAA-AATTCAC-AAAATGGCTGCGAAAGTTCATTTAAATTAGATGAAATTCTCACCCGGGTT-AAAATTATGTGTAATATGCATATTGCACAAGGCAGTAT------TGTAT----------TTAAG-------TATAACACTTAG-TTCA------------AATGATAACCCC---AATAATGTAGGCCTTTTGAGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactggattttcctgatataaaatttttttttttttttctgataatcaaaaattcacaaaatggctgcgaaagttcatttaaattagatgaaattctcacccgggttaaaattatgtgtaatatgcatattgcacaaggcagtattgtatttaagtataacacttagttcaaatgataaccccaataatgtaggccttttgagccctaga
gi|11 : ctatgagggcgctgtttagtatttttgaatgtattttctgaatatcaaaaatcattttctgataatccgaaatccgattttcctgatatcaagaaaataagaaatattttgaatttttggaatatcagaaaatagtttttctgatatcaaaaatttatttctgattcagaaattcattttttaatataattttataattgatatcagaaaatatttaggattttctgatactcaaaataattcttcgatatcaaaataatcgattttttttgatacaagaaaaataagtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAATCGAATTT-CTGATAATAA-AAAA-T----C-A------T--------TTTATG--ATATCAAAATTT-CG-ATGT----TCTGATATCATAAA------ATA----TT---------ACT--TAT----ATTCT-G--AA-------TTTTAA----AGAAA---TTTGATTTTT----TTTATATCAGAAAATCA--TTT-taga
gi|13 : a-AATCGAATTTTTTTTACATCAT-ATAATAAGTAACATTTTTTTTATATCAGA-AAATA-CAATT-TTCGATTTGTTTGATATCAGAAAATCATTTTCTGACATAAAA--AAATCAACTGG-ATTTAAACTTAtct
gi|14 : tTATGAGG-CGCAG-TTTTAGTATTTTTGAG-C-TATTTTCTGATATTAAAAAATAATTTT-CTTGAT-ATAAAAAAATCGAATTT-CTGATAACAA-AAAA-T----A-A---------------ATTCTA--ATATCAGAA
gi|15 : tCCGGATTAAAAATTATGTGTA-TAAACATATAGCAC-AGGCAGTATAAGCTATGTATGTTTGTATACTTAAGTAATAATTATAACACTTAGCTTCAAATGATAACCCCAAT
gi|18 : AGAGATTGCA-ATTC----T-TGATATCA-GAA------ATC----TT----------TT--TTT----ATATC-A--AT--TTTTTCCCTGATAT
gi|2 : CCCCC---CAGAATGTCG-CCTTTTGAGCTCCCAAAga
gi|20 : taaggtacttaacttcaaattatatcccccccccccccccACTTAGCTTTAAATGACA--CC--------CCCAC---AAGAATGTCGGTCTTTTgaatatgcaatgcaaatatattttattttactactgttcccttctacgataatattatctacaaaagcatgtataacatgactgtattcattgcctcttgtctctgaaaaactgcaacaaaacatggcttgactgctcgatttcacgtttcacaccacgaaatgctttgtagtgatactgcactgattgagtgcaggattttcattgtctggcatgctcatctaaaattacgtttggaaatcttgggagttatttatagataaatgaagctgcaagaatggcacaggaaaattgttgttattaaatgcacagggaagatttgttgttattaaaaagattggagataaatttaatataatattgctttgcaaaaatgatggtttttaatggttacattggccataattgatctaacttagttacaaacattaggaataggaggactacaaacatagggagaggggggggggggggcttagttttacccatctccccctggttt
gi|3 : caaattTATGAGG-CGCAA-TTTTAGTATTTTTGA--TGCGTTTTCTGATA-TCAGAAA--ATTCTTTTTGAT-GTCAGAAAATGGAATTT-GTGATATCAC-AAAA-T----C-A------C--------TTTCTG--ATATCAAACATT-CGCATTTATTATCTGATA----ACA------ATT----TT---------ATTGATATG---ATATC-AGAAA--TTATTTACTGATATCAAAAA---T---AATTTT----CTGAAATCAGAAAATGA--TCT-GAA-----TCAAATGATA-------TAACT-ATTAATATCAAAT-AATAAA-TTTTTT-GATATAAG-AAAATACGTAACATTTTTG--GTGTCA-ACAAATAG-AATTATTCGATTT-TTTCACATCAGAAAATCATTTT-TGATATAAAAATAAATCAACTAGAATTT---CTTATCTGATAAATTTATTTTTTT----------------ATA-TCAAACA-TTCAAAAAAATGGCTACAAAAATGTGTTTAA--TAAATCAATTTTATAT---GCTTAGAAATTATGTGC-GTAAACATATTGGAC-AG-----AT------TGCAT----------CGAAG------TTTTAACACTTAGCT---AAT------TCAAATGATAACCTC---AAGAATGTCAGTCTTTTGAGC-CCCAAAt
gi|4 : CTTAGCTTCAAATGACA--TCGAATGATACCCCCCG-AAGAATGTCGGACTTTTGAGCTCCCAAAa
gi|5 : aaggtcATATTTAGCTTCAAATGACA--CCGAATGATACCCCCCATAAGAATGTCGGCCTTCTTAGCTCCCAAAgaataggcaatgcaaaagtacttacttccatatttttctacgataatttatctacaaatccatgtatagcaattgcctcttgtgtccgtaaaatgcaaaaaaaacatgacgcaactgctcaatatcccatttctcaccaagaagtgttgtgtagtgataccgcaccgatgaagagcgtgattttcattggctagtgcgctcgtctaaaattacgttttgaaatcttgggagttgaagccacagggaagaatgttattaataaaaattgctggcaaaatgatggttttaatggtgaccattggccataattgattttatttgatattgtttacttagtaacaaacattgggaaaagggggggactacaattaagaaggtgaggggggcttagatcgattcacccgtcttcccatgc
gi|5 : caagATTTAGCTTCAAATGACA--CCGAgaatatgcaatacaaatgcatttactaccgttttcttctgcgataatttaattaaaagactgcattcattgtctcttatctcccaaaactgcaacaaaacagggctcgactgctcgatttcccatatgctttgtactgataccgcacagaataagcacgcgattttgattggctgcacgctcatcgaaaattacgtttggacattttatggaaagagagtgtacaacaaaatcggtgtcatttgaagctaaatacct
gi|6 : caagatatttagcttcaaatgacaccgaatgataccccccataagaatgtcggccttcttagctcccaaagaatatgcaatacaaatgcatttactaccgttttcttctgcgataatttaattaaaagactgcattcattgtctcttatctcccaaaactgcaacaaaacagggctcgactgctcgatttcccatatgctttgtactgataccgcacagaataagcacgcgattttgattggctgcacgctcatcgaaaattacgtttggacattttatggaaagagagtgtacaacaaaaATGAGG-TGCCGATTTTGGT--TTTTGAGGTATGTTTTCTGATA-TCAGAAATCATTTTTTTAGTC-ATCAAAAAATTGAATAG--TGAT-TCAA-AAAAAT----G-A------T--------TTTCTG---TATCAAAAATTTCG-ATTT----TCTGATATCA-AAA------ATC----TT---------A--------------------AC--TTATTTTCTGATATTAAGGAGATTT--GATTTT----TTTATATT-GAAGTTCA--TTT-----------------------------TT-TTTTA-ATCAATA-AACTGG-TTTTCTTGATATCAG-AAAacct
gi|7 : cacacaatatgTGATATAAG-AAAA-T----G-AGTAACAT--------TTTTT---ATATCATAAATT-CG-ATTA----TTTTATATCA-GAAAATCATATT----TTCAGGGGAAAATT--GAT----ATAAA-A--AA--TGA-TTTCTGATATCAAGAA---TTGGAA-TTT----CTGATATCAAAAAATTATTTTT-GAG-----T-----TATCA------TAAAG-TTTAA-ATCAAAA-Acatt
gi|8 : aggcgccgttagtaACTTAGCCTGAGATGATA--CC--------CCACT---GAGAAGGCCTGTCTCTTGAGCTTCCA
gi|9 : acaaggtT-CTAATATCAA-AAGT-T----TTA------T--------TTTCTG--ATATCAAAAAAT-CG-ATTA----CCTGAAATAA-AGA------ATTCTTCTT---------TTT--TATCAGAAAATC-A--AA--ATATTTTCTGATATCAAAAA---TT--GAATTT----CTGAAGTAAGAAAATCG---CT-AAA-----T-----GAT-----------TT-TCTGATATCAAAA-AATCAA-gggagtatgtgatgaaaatgtatttacacaataatttatctacaaatctatgtatggtatgacggcatttattgtcttttctagaaaaactgcaatagaacatggctttaca
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAAACGATTGGAGATGAATTCAAAATAGAAGGCAAAATTACGATTTTATTAGTGACCATTGGCCATAATTGATCATGTTTGATATTACTTAGCTAGTAACATTAGGAAAAGAAAACAATACCACAAAGATAAAGGAGACTCCACCCTTCTCCCCCAT
Unaligned ( gi|12 ): TTCAAAATGATTATTTTAATGGTGATCATTGACCATGATTGATCTTATTTAGTTAGTAACATTGGGTTAAGAACAACATACTACAAAAAATGAGAAGGAAGAGACGGGGGTCACCCCTCTCGTCCATGTT
Unaligned ( gi|16 ): TACTGACACTGTGCACAGATTTGATTGGCTGGCATGCACTTCTGAAATTATGTTTTGAAATCTTGGAATTTATCTAT
Unaligned ( gi|17 ): CAACAAGGTACTTAGCCTGAGATGATACACCACACTGAGAAGGCCTGTCTTCTTTGAGCTTCCAGGGAG
Unaligned ( gi|19 ): TATCTACAAAACAAGACATAACACGACTGCATTTATTGCCACTTATCTCCG
Alignments
lowQualScore : 111111111111111111
lowQualScore : 8888888888888888888888888888888 11 2222 33333333333 222222222222 1111 66666666666666666666666666666666 555555555555 8888888888888888888 11 1 1 111 222 33 1 1 1 11 222 111 111111111111111111 1 222 11 11 11 1 333333 7777777777777777777777 1 111
lowQualScore : 8 1 8 66 0 1111111111111111111111111111111 99 0000 55 6 8 11111111111 1 77 5 66 0 5 555555555555 5 5 5 2222 4 5 11111111111111111111111111111111 77 1 111111111111 2 6 44 2222222222222222222 1 00 3 8 8 0 3 1 0 999 111 00 5 5 1 5 88 7 333 8888 1 999 1 111111111111111111 5 111 66 1 88 1 1 1 6 1 7 99 3 6 888888 1111111111111111111111 0 66 0 777 0 1
lowQualScore : . . . .. . ............................... .. .... .. . . ........... . .. . .. . . ............ . . . .... . . ................................ .. . ............ . . .. ................... . .. . . . . . . . ... ... .. . . . . .. . ... .... . ... . .................. . ... .. . .. . . . . . . .. . . ...... ...................... . .. . ... . .
lowQualScore : 0 0 0 44 8 0000000000000000000000000000000 00 2222 66 0 0 77777777777 7 99 7 77 1 7 888888888888 7 7 7 1111 3 7 66666666666666666666666666666666 99 0 222222222222 5 7 88 7777777777777777777 2 22 2 0 0 0 2 0 0 555 000 00 5 0 0 0 55 3 333 3333 0 555 0 000000000000000000 5 555 55 0 55 0 0 0 7 0 3 33 3 7 333333 0000000000000000000000 2 99 8 999 4 7
consensus : TATGAGG-CGCCG-TTTTAGTATTTTTGAG-TGTA--TT---------------------TTCTGATAA-TCAGAAATC--ATTTTTCTTGATATCA-GAAAAT-----------CGAATTTCTG--ATATC-AAAAAATN-ATTTT-CTGATATCA-----------AAAA-TT-CG-ATTT----TCTGATATCA-AAAATT----TTATT--TAT----ATATCG--AATTATTTT--CTGATATCAAAAA----TT--A---ATTTTCTNATA-TCAGAAAATCATCTGAAT-----GAT-TAATTTTT-GATATCAAAA-AATCGA-TTTT-TTTGATATNAG-AAAATAAGTAACATTTTTNTTGTGTCAGACAAATAGCAATTATTCGATTTGTTTNACATCAGAAAATCATTTTCTGACATAAAAATAAATCAACTGGAATTT---CTTATCTGATANANTTANTTTTTT--TTTTTTTTTTTCTGATAATCAAACAATTCANAAAAATGGCTGCGAAAGTNCGTTTAAATTAGATNAANTTCNCACCCGGNTTAAAAATTATGTGTAGTAAACATATTGCAC-AGGCAGTAT------TGTAT----------TTAAG------TTATAACACTTAGCTTCAAATGACA--CCGAATGATACCCCC---AAGAATGTCGGCCTTTTGAGCTCCCAAA
Reference ( family-2859 ) : TATGAGG-CGCNG-TTTTAGTATTTTTGAG-TGTG--TT---------------------TTCTGATA--TCAGAAATC--ATTTTTTTTGATATCA-GAAAAT-----------CGAATTTCTG--ATATC-AAAAAATN-ATTTT-CTGATATCA-----------GAAA-TT-CG-ATTT----TCTGATATCA-AAAATT----TTATT--TAT----ATATCG--AATTATTTT--CTGATATCAAAAA----TT--A---ATTTTCTGATA-TCAGAAAATCATTTGAAT-----GATATAATTTTT-GATATCAAAA-AATCGA-TTTT-TTTGATATNAG-AAAATAAGTAACATTTTTNTTGTGTCAGACAAATAGCAATTATTCGATTTGTTTNACATCAGAAAATCATTTTCTGACATAAAAATAAATCAACTGGAATTT---CTTATCTGATANANTTANTTTTTTTT--TTTTTTTTTCTGATAATCAAACAATTCANAAAAATGGCTGCGAAAGTNCGTTTAAATTAGATNAANTTCNCACCCGGNTTAAAAATTATGTGTAGTAAACATATTGCAC-AGGCAGTAT------TGTAT----------TTAAG------TTATAACACTTAGCTTCAAATGACA--CCGAATGATACCCCC---AAGAATGTCGGCCTTTTGAGCTCCCAAA
gi|1 : TATGAGGGCGCTG-TTT-AGTATTTTTGAA-TGTA--TTTTCTGAATATCAAAAATCATTTTCTGATAA-TCCGAAATCCGATTTTCCT-GATATCAAGAAAATAAGAAATATTTTGAATTTTTGGAATATC-AGAAAATA-GTTTTTCTGATATCA-----------AAAA-TT-TA---TT----TCTGAT-TCA-GAAATTCA--TTTTT--TA-----ATAT----AATT-TTATAATTGATATCAGAAAATATTT--AGG-ATTTTCTGATACTCAAAA---------------------TAATTCTTCGATATCAAAATAATCGA-TTTTTTTTGATACAAGAAAAATAAGTAA
gi|1 : cACTGGATTTT---C----CTGATATAA--AATTTT----TTTTTTTTTTTCTGATAATCAAA-AATTCAC-AAAATGGCTGCGAAAGTTCATTTAAATTAGATGAAATTCTCACCCGGGTT-AAAATTATGTGTAATATGCATATTGCACAAGGCAGTAT------TGTAT----------TTAAG-------TATAACACTTAG-TTCA------------AATGATAACCCC---AATAATGTAGGCCTTTTGAGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactggattttcctgatataaaatttttttttttttttctgataatcaaaaattcacaaaatggctgcgaaagttcatttaaattagatgaaattctcacccgggttaaaattatgtgtaatatgcatattgcacaaggcagtattgtatttaagtataacacttagttcaaatgataaccccaataatgtaggccttttgagccctaga
gi|11 : ctatgagggcgctgtttagtatttttgaatgtattttctgaatatcaaaaatcattttctgataatccgaaatccgattttcctgatatcaagaaaataagaaatattttgaatttttggaatatcagaaaatagtttttctgatatcaaaaatttatttctgattcagaaattcattttttaatataattttataattgatatcagaaaatatttaggattttctgatactcaaaataattcttcgatatcaaaataatcgattttttttgatacaagaaaaataagtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAAT-----------CGAATTTCTG--ATAAT-AAAAAATC-ATTTT-ATGATATCA-----------AAAT-TT-CG-ATGT----TCTGATATCATAAAATA----TTACT--TAT----ATTCTG--AA-----TT--TTAA----AGAAA----TTTGA---TTTTTTTTATA-TCAGAAAATCATTTtaga
gi|13 : a-AATCGAATTTT-TTTTACATCAT-ATAATAAGTAACATTTTTTTTATATCAGA-AAATA-CAATT-TTCGATTTGTTTGATATCAGAAAATCATTTTCTGACATAAAA--AAATCAACTGG-ATTTAAACTTAtct
gi|14 : tTATGAGG-CGCAG-TTTTAGTATTTTTGAG-C-TA--TT---------------------TTCTGATA--TTAAAAAAT--AATTTTCTTGATATAA-AAAAAT-----------CGAATTTCTG--ATAAC-AAAAAATA-A-ATT-CTAATATCA-----------GAA
gi|15 : tCCGGATTAAAAATTATGTGTA-TAAACATATAGCAC-AGGCAGTATAAGCTATGTATGTTTGTATACTTAAGTAATAATTATAACACTTAGCTTCAAATGATAACCCCAAT
gi|18 : A-----------GAGA-TTGCA-ATTC----T-TGATATCA-GAAATC----TT-TT--TTT----ATATCA--ATTTTTTCC--CTGATAT
gi|2 : CCCCC---CAGAATGTCG-CCTTTTGAGCTCCCAAAga
gi|20 : taaggtacttaacttcaaattatatcccccccccccccccACTTAGCTTTAAATGACA--CC--------CCCAC---AAGAATGTCGGTCTTTTgaatatgcaatgcaaatatattttattttactactgttcccttctacgataatattatctacaaaagcatgtataacatgactgtattcattgcctcttgtctctgaaaaactgcaacaaaacatggcttgactgctcgatttcacgtttcacaccacgaaatgctttgtagtgatactgcactgattgagtgcaggattttcattgtctggcatgctcatctaaaattacgtttggaaatcttgggagttatttatagataaatgaagctgcaagaatggcacaggaaaattgttgttattaaatgcacagggaagatttgttgttattaaaaagattggagataaatttaatataatattgctttgcaaaaatgatggtttttaatggttacattggccataattgatctaacttagttacaaacattaggaataggaggactacaaacatagggagaggggggggggggggcttagttttacccatctccccctggttt
gi|3 : caaattTATGAGG-CGCAA-TTTTAGTATTTTTGA--TGCG--TT---------------------TTCTGATA--TCAGAAA----ATTCTTTTTGATGTCA-GAAAAT-----------GGAATTTGTG--ATATC-ACAAAATC-ACTTT-CTGATATCA-----------AACA-TT-CGCATTTATTATCTGATA----ACAATT----TTATTGATATG---ATATCAGAAATTATTTA--CTGATATCAAAAA----T---A---ATTTTCTGAAA-TCAGAAAATGATCTGAATCAAATGATATAACTATT-AATATCAAAT-AATAAA-TTTT-TT-GATATAAG-AAAATACGTAACATTTTTG--GTGTCA-ACAAATAG-AATTATTCGATTT-TTTCACATCAGAAAATCATTTT-TGATATAAAAATAAATCAACTAGAATTT---CTTATCTGATAAATTTATTTTTTT----------------ATA-TCAAACA-TTCAAAAAAATGGCTACAAAAATGTGTTTAA--TAAATCAATTTTATAT---GCTTAGAAATTATGTGC-GTAAACATATTGGAC-AG-----AT------TGCAT----------CGAAG------TTTTAACACTTAGCT---AAT------TCAAATGATAACCTC---AAGAATGTCAGTCTTTTGAGC-CCCAAAt
gi|4 : CTTAGCTTCAAATGACA--TCGAATGATACCCCCCG-AAGAATGTCGGACTTTTGAGCTCCCAAAa
gi|5 : aaggtcATATTTAGCTTCAAATGACA--CCGAATGATACCCCCCATAAGAATGTCGGCCTTCTTAGCTCCCAAAgaataggcaatgcaaaagtacttacttccatatttttctacgataatttatctacaaatccatgtatagcaattgcctcttgtgtccgtaaaatgcaaaaaaaacatgacgcaactgctcaatatcccatttctcaccaagaagtgttgtgtagtgataccgcaccgatgaagagcgtgattttcattggctagtgcgctcgtctaaaattacgttttgaaatcttgggagttgaagccacagggaagaatgttattaataaaaattgctggcaaaatgatggttttaatggtgaccattggccataattgattttatttgatattgtttacttagtaacaaacattgggaaaagggggggactacaattaagaaggtgaggggggcttagatcgattcacccgtcttcccatgc
gi|5 : caagATTTAGCTTCAAATGACA--CCGAgaatatgcaatacaaatgcatttactaccgttttcttctgcgataatttaattaaaagactgcattcattgtctcttatctcccaaaactgcaacaaaacagggctcgactgctcgatttcccatatgctttgtactgataccgcacagaataagcacgcgattttgattggctgcacgctcatcgaaaattacgtttggacattttatggaaagagagtgtacaacaaaatcggtgtcatttgaagctaaatacct
gi|6 : caagatatttagcttcaaatgacaccgaatgataccccccataagaatgtcggccttcttagctcccaaagaatatgcaatacaaatgcatttactaccgttttcttctgcgataatttaattaaaagactgcattcattgtctcttatctcccaaaactgcaacaaaacagggctcgactgctcgatttcccatatgctttgtactgataccgcacagaataagcacgcgattttgattggctgcacgctcatcgaaaattacgtttggacattttatggaaagagagtgtacaacaaaaATGAGG-TGCCGATTTTGGT--TTTTGAGGTATG--TT---------------------TTCTGATA--TCAGAAATC--ATTTTTTTAGTCATCA-AAAAAT-----------TGAA-TAGTG--AT-TCAAAAAAATG-ATTTT-CTG-TATCA-----------AAAATTT-CG-ATTT----TCTGATATCA-AAAATC----TTA-------------------ACTTATTTT--CTGATATTAAGGAGAT-TT--G---ATTTTTTTATA-TT-GAAGTTCATTT----------------TTTTT-TA-ATCAATA-AACTGG-TTTT-CTTGATATCAG-AAAacct
gi|7 : cacacaatatgAGG-CGCCG-TT--AGTATTTTTGAT-T-TAAACT---------------------TTATGATAACTCAAAAATA--ATTTT--TTGATATCA-GAAATT-----------CCAATTCTTG--ATATC--AGAAATC-ATTTT-TT-ATATCAATTTTCCCCTGAAAA-TA-TG-ATTT----TCTGATAT-A-AAA--------TA-------------ATCG--AA----TTT--ATGATATAAAAAATG--TT--ACTCATTTTCTTATA-TCAcatt
gi|8 : ACTTAGCCTGAGATGATA--CC--------CCACT---GAGAAGGCCTGTCTCTTGAGCTTCCA
gi|9 : acaaggtTCTA--ATATC-AAAAGTTTTATTTT-CTGATATCA-----------AAAA-AT-CG-ATTA----CCTGAAATAA-AGAATTCTTCTTTTT--TATCAGAAAATCA--AAATATTTT--CTGATATCAAAAA----TT--G---AATTTCTGAAG-TAAGAAAATCG-CTAAAT-----GAT----TTTCT-GATATCAAAA-AATCAA-gggagtatgtgatgaaaatgtatttacacaataatttatctacaaatctatgtatggtatgacggcatttattgtcttttctagaaaaactgcaatagaacatggctttaca
blockSeqs : . A A TT GGTATGTT AC AT TC T . . C . A TT . ATTTTCCCCTGA T G C ATTA C T TCTTCTTTTTTATCAGAAAATCAAAATA . C TGTTACTC T . AA TCTGAATCAAATGATATAA A A T . A . T C . G AC G A . C . AT A AAA TTAT A TTT T TT . CA AA G . C T A C A A A . G AAGCTA GTTTGTATACTTAAGTAATAAT AC C CAT T
blockSeqs : . A . TT TTTAAACT . TC TT T . . C . . C . A . . . . C . TTTATTGATATGATATCAGAAATTA . T GATTTG G . AA CTAAATGAT T T T . . . T A . . . . C A G . . . CGAAGT . A CG T
blockSeqs : . C . TT GCTATT . TA TT A . . G . . A . G . . . . C . CTTTTTTTATATCAATTTT . A TTTGA T . GT TTT T G . . . . . C . . G . T
blockSeqs : . C . . TGCGTT . . . T . . G . . C . G . . . . A . ATTACTTATATTCTGAA . C TTG T . AA . . . G . T
blockSeqs : . T . . G . A . . . . . . CTTAACTTA . . TA G . . G . .
blockSeqs : C . . C . A . . . . . . TAATCGAA . . . .
blockSeqs : A . .
blockSeqCons : TT CTACGCT************************ ** TN** *********** ** CTTATTTTATATCAGAATTA************ ** TTTA******** AA
originalCons : TATGAGG-CGCCG-TTTTAGTATTTTTGAG-TGTA--TT---------------------TTCTGATAA-TCAGAAATC--ATTTTTCTTGATATCA-GAAAAT-----------CGAATTTCTG--ATATC-AAAAAATN-ATTTT-CTGATATCA-----------AAAA-TT-CG-ATTT----TCTGATATCA-AAAATT----TTATT--TAT----ATATCG--AATTATTTT--CTGATATCAAAAA----TT--A---ATTTTCTNATA-TCAGAAAATCATCTGAAT-----GAT-TAATTTTT-GATATCAAAA-AATCGA-TTTT-TTTGATATNAG-AAAATAAGTAACATTTTTNTTGTGTCAGACAAATAGCAATTATTCGATTTGTTTNACATCAGAAAATCATTTTCTGACATAAAAATAAATCAACTGGAATTT---CTTATCTGATANANTTANTTTTTT--TTTTTTTTTTTCTGATAATCAAACAATTCANAAAAATGGCTGCGAAAGTNCGTTTAAATTAGATNAANTTCNCACCCGGNTTAAAAATTATGTGTAGTAAACATATTGCAC-AGGCAGTAT------TGTAT----------TTAAG------TTATAACACTTAGCTTCAAATGACA--CCGAATGATACCCCC---AAGAATGTCGGCCTTTTGAGCTCCCAAA
finalCons : TATGAGG-CGCCG-TTTTAGTATTTTTGACTACGCT------------------------TTCTGATA--TCAGAAATN--ATTTTTCTTGATATCA-GAAAAT-----------CGAATTTCTG--ATATC-AAAAAATN-ATTTT-CTGATATCA-----------AAAA-TT-CG-ATTT----TCTGATATCA-AAAATCTTATTTTATATCAGAATTA------------TTTT--CTGATATCAAAAATTTA--------ATTTTCTNATA-TCAGAAAATCATCTGAAT-----GAT-TAATTTTT-GATATCAAAA-AATCGA-TTTT-TTTGATATNAG-AAAATAAGTAACATTTTTNTTGTGTCAGACAAATAGCAATTATTCGATTTGTTTNACATCAGAAAATCATTTTCTGACATAAAAATAAATCAACTGGAATTT---CTTATCTGATANANTTANTTTTTT--TTTTTTTTTTTCTGATAATCAAACAATTCANAAAAATGGCTGCGAAAGTNCGTTTAAATTAGATNAANTTCNCACCCGGNTTAAAAATTATGTGTAGTAAACATATTGCAC-AGGCAGTAT------TGTAT----------TTAAG------TTATAACACTTAGCTTCAAATGACA--CCGAATGATACCCCC---AAGAATGTCGGCCTTTTGAGCTCCCAAA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAAACGATTGGAGATGAATTCAAAATAGAAGGCAAAATTACGATTTTATTAGTGACCATTGGCCATAATTGATCATGTTTGATATTACTTAGCTAGTAACATTAGGAAAAGAAAACAATACCACAAAGATAAAGGAGACTCCACCCTTCTCCCCCAT
Unaligned ( gi|12 ): TTCAAAATGATTATTTTAATGGTGATCATTGACCATGATTGATCTTATTTAGTTAGTAACATTGGGTTAAGAACAACATACTACAAAAAATGAGAAGGAAGAGACGGGGGTCACCCCTCTCGTCCATGTT
Unaligned ( gi|16 ): TACTGACACTGTGCACAGATTTGATTGGCTGGCATGCACTTCTGAAATTATGTTTTGAAATCTTGGAATTTATCTAT
Unaligned ( gi|17 ): CAACAAGGTACTTAGCCTGAGATGATACACCACACTGAGAAGGCCTGTCTTCTTTGAGCTTCCAGGGAG
Unaligned ( gi|19 ): TATCTACAAAACAAGACATAACACGACTGCATTTATTGCCACTTATCTCCG
Alignments
lowQualScore : 11111111111111111111111111111 111111111111111111
lowQualScore : 444444444 11 11 3333333333333333 22222222222 1111 66666666666666666666666666666666 11111 2222222222 11111111111111111111111111111 1 1 1 111 222 33 1 1 1 11 222 111 111111111111111111 1 222 11 11 11 1 333333 7777777777777777777777 1 111
lowQualScore : 8 3 8 66 0 000000000 8 11 99 77 8 5 5 5 0000000000000000 77 33333333333 5 5 5 2222 4 5 666 88888888888888888888888888888888 77 11111 4444444444 6 1 5 0 11111111111111111111111111111 0 0 3 8 6 3 1 0 999 111 00 5 5 1 5 88 7 333 8888 1 999 1 111111111111111111 5 111 66 1 88 1 1 1 6 1 7 99 3 6 888888 1111111111111111111111 0 66 0 777 0 1
lowQualScore : . . . .. . ......... . .. .. .. . . . . ................ .. ........... . . . .... . . ... ................................ .. ..... .......... . . . . ............................. . . . . . . . . ... ... .. . . . . .. . ... .... . ... . .................. . ... .. . .. . . . . . . .. . . ...... ...................... . .. . ... . .
lowQualScore : 0 2 0 44 8 888888888 0 00 88 00 0 7 7 7 7777777777777777 99 88888888888 7 7 7 1111 3 7 777 11111111111111111111111111111111 99 00000 2222222222 7 0 0 8 00000000000000000000000000000 0 2 2 0 0 2 0 0 555 000 00 5 0 0 0 55 3 333 3333 0 555 0 000000000000000000 5 555 55 0 55 0 0 0 7 0 3 33 3 7 333333 0000000000000000000000 2 99 8 999 4 7
consensus : TATGAGG-CGCCG-TTTTAGTATTTTTGA-N-T-ATGTTTTCTGA-TA--TCAAAAATCATTTTTTTTGATA-TCAGAAAATCGAATTTC-TGATATC-AA-AAAAT----N-AT--------TTTCTG--ATATCA-----------AAAA-TT-CG-ATTT----TCTGATATCA-AAAA-TCTTATT----TT--ATA-TCAG--AA--T-----TATTTT--CTGATATCAA--AAAT-T---TA---A-TTTTCTNATATCAGAAAATCATTT-GAA-----T-----GATA-------TAATT-TTTGATATCAAAA-AATCGA-TTTTTTTGATATNAG-AAAATAAGTAACATTTTTNTTGTGTCAGACAAATAGCAATTATTCGATTTGTTTNACATCAGAAAATCATTTTCTGACATAAAAATAAATCAACTGGAATTT---CTTATCTGATANANTTANTTTTTT--TTTTTTTTTTTCTGATAATCAAACAATTCANAAAAATGGCTGCGAAAGTNCGTTTAAATTAGATNAANTTCNCACCCGGNTTAAAAATTATGTGTAGTAAACATATTGCAC-AGGCAGTAT------TGTAT----------TTAAG------TTATAACACTTAGCTTCAAATGACA--CCGAATGATACCCCC---AAGAATGTCGGCCTTTTGAGCTCCCAAA
Reference ( family-2859 ) : TATGAGG-CGCCG-TTTTAGTATTTTTGA-C-T-ACGCTTTCTGA-TA--TCAGAAATNATTTTTCTTGATA-TCAGAAAATCGAATTTC-TGATATC-AA-AAAAT----N-AT--------TTTCTG--ATATCA-----------AAAA-TT-CG-ATTT----TCTGATATCA-AAAA-TCTTATT----TT--ATA-TCAG--AA--T-----TATTTT--CTGATATCAA--AAAT-T---TA---A-TTTTCTNATATCAGAAAATCATCT-GAA-----T-----GAT--------TAATT-TTTGATATCAAAA-AATCGA-TTTTTTTGATATNAG-AAAATAAGTAACATTTTTNTTGTGTCAGACAAATAGCAATTATTCGATTTGTTTNACATCAGAAAATCATTTTCTGACATAAAAATAAATCAACTGGAATTT---CTTATCTGATANANTTANTTTTTTTT--TTTTTTTTTCTGATAATCAAACAATTCANAAAAATGGCTGCGAAAGTNCGTTTAAATTAGATNAANTTCNCACCCGGNTTAAAAATTATGTGTAGTAAACATATTGCAC-AGGCAGTAT------TGTAT----------TTAAG------TTATAACACTTAGCTTCAAATGACA--CCGAATGATACCCCC---AAGAATGTCGGCCTTTTGAGCTCCCAAA
gi|1 : TATGAGGGCGCTG-TTT-AGTATTTTTGA-A-T-GTATTTTCTGAATA--TCAAAAATCATTTTC--TGATAATCCGAAATCCGATTTTCCTGATATC-AAGAAAATAAGAA-ATATTTTGAATTTTTGGAATATCA-----------GAAA-AT-AG-TTTT----TCTGATATCA-AAAA-T-TTATT----TCTGAT--TCAG--AAATT-----CATTTT--TTAATAT------AAT-TTTATA---A-T----TGATATCAGAAAAT-ATTTAGGATTTTCT-----GATACTCAAAATAATTCTTCGATATCAAAATAATCGATTTTTTTTGATACAAGAAAAATAAGTAA
gi|1 : cACTGGATTTT---C----CTGATATAA--AATTTT----TTTTTTTTTTTCTGATAATCAAA-AATTCAC-AAAATGGCTGCGAAAGTTCATTTAAATTAGATGAAATTCTCACCCGGGTT-AAAATTATGTGTAATATGCATATTGCACAAGGCAGTAT------TGTAT----------TTAAG-------TATAACACTTAG-TTCA------------AATGATAACCCC---AATAATGTAGGCCTTTTGAGCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactggattttcctgatataaaatttttttttttttttctgataatcaaaaattcacaaaatggctgcgaaagttcatttaaattagatgaaattctcacccgggttaaaattatgtgtaatatgcatattgcacaaggcagtattgtatttaagtataacacttagttcaaatgataaccccaataatgtaggccttttgagccctaga
gi|11 : ctatgagggcgctgtttagtatttttgaatgtattttctgaatatcaaaaatcattttctgataatccgaaatccgattttcctgatatcaagaaaataagaaatattttgaatttttggaatatcagaaaatagtttttctgatatcaaaaatttatttctgattcagaaattcattttttaatataattttataattgatatcagaaaatatttaggattttctgatactcaaaataattcttcgatatcaaaataatcgattttttttgatacaagaaaaataagtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAATCGAATTTC-TGATAAT-AA-AAAAT----C-AT--------TTTATG--ATATCA-----------AAAT-TT-CG-ATGT----TCTGATATCATAAAA-TATTA-C----TT--ATATTCTG--AA------------TT--TTAA----AG--AAAT-T---TG---ATTTTTTTTATATCAGAAAATCATTT-taga
gi|13 : a-AATCGAATTTTTTTTACATCAT-ATAATAAGTAACATTTTTTTTATATCAGA-AAATA-CAATT-TTCGATTTGTTTGATATCAGAAAATCATTTTCTGACATAAAA--AAATCAACTGG-ATTTAAACTTAtct
gi|14 : tTATGAGG-CGCAG-TTTTAGTATTTTTGAGC-T-AT--TTTCTGA-TA--TTAAAAAATAATTTTCTTGATA-TAAAAAAATCGAATTTC-TGATAAC-AA-AAAAT----A-A---------ATTCTA--ATATCA-----------GAA
gi|15 : tCCGGATTAAAAATTATGTGTA-TAAACATATAGCAC-AGGCAGTATAAGCTATGTATGTTTGTATACTTAAGTAATAATTATAACACTTAGCTTCAAATGATAACCCCAAT
gi|18 : A-----------GAGA-TTGCA-ATTC----T-TGATATCA-GAAA-TCTTTTT----TT--ATA-TC----AA--T-----T-TTTTCCCTGATAT
gi|2 : CCCCC---CAGAATGTCG-CCTTTTGAGCTCCCAAAga
gi|20 : taaggtacttaacttcaaattatatcccccccccccccccACTTAGCTTTAAATGACA--CC--------CCCAC---AAGAATGTCGGTCTTTTgaatatgcaatgcaaatatattttattttactactgttcccttctacgataatattatctacaaaagcatgtataacatgactgtattcattgcctcttgtctctgaaaaactgcaacaaaacatggcttgactgctcgatttcacgtttcacaccacgaaatgctttgtagtgatactgcactgattgagtgcaggattttcattgtctggcatgctcatctaaaattacgtttggaaatcttgggagttatttatagataaatgaagctgcaagaatggcacaggaaaattgttgttattaaatgcacagggaagatttgttgttattaaaaagattggagataaatttaatataatattgctttgcaaaaatgatggtttttaatggttacattggccataattgatctaacttagttacaaacattaggaataggaggactacaaacatagggagaggggggggggggggcttagttttacccatctccccctggttt
gi|3 : caaattTATGAGG-CGCAA-TTTTAGTATTTTTGA---T-GCGTTTTCTGA-TA--TCAGAAA--ATTCTTTTTGATG-TCAGAAAATGGAATTTG-TGATATC-AC-AAAAT----C-AC--------TTTCTG--ATATCA-----------AACA-TT-CGCATTTATTATCTGATA----ACAA-TTTTATTGATATG--ATA-TCAG--AAA-T-----TATTTA--CTGATATCAA--AAAT------A---A-TTTTCTGAAATCAGAAAATGATCT-GAA-----TCAAATGATA-------TAACT-ATTAATATCAAAT-AATAAA-TTTTTT-GATATAAG-AAAATACGTAACATTTTTG--GTGTCA-ACAAATAG-AATTATTCGATTT-TTTCACATCAGAAAATCATTTT-TGATATAAAAATAAATCAACTAGAATTT---CTTATCTGATAAATTTATTTTTTT----------------ATA-TCAAACA-TTCAAAAAAATGGCTACAAAAATGTGTTTAA--TAAATCAATTTTATAT---GCTTAGAAATTATGTGC-GTAAACATATTGGAC-AG-----AT------TGCAT----------CGAAG------TTTTAACACTTAGCT---AAT------TCAAATGATAACCTC---AAGAATGTCAGTCTTTTGAGC-CCCAAAt
gi|4 : CTTAGCTTCAAATGACA--TCGAATGATACCCCCCG-AAGAATGTCGGACTTTTGAGCTCCCAAAa
gi|5 : aaggtcATATTTAGCTTCAAATGACA--CCGAATGATACCCCCCATAAGAATGTCGGCCTTCTTAGCTCCCAAAgaataggcaatgcaaaagtacttacttccatatttttctacgataatttatctacaaatccatgtatagcaattgcctcttgtgtccgtaaaatgcaaaaaaaacatgacgcaactgctcaatatcccatttctcaccaagaagtgttgtgtagtgataccgcaccgatgaagagcgtgattttcattggctagtgcgctcgtctaaaattacgttttgaaatcttgggagttgaagccacagggaagaatgttattaataaaaattgctggcaaaatgatggttttaatggtgaccattggccataattgattttatttgatattgtttacttagtaacaaacattgggaaaagggggggactacaattaagaaggtgaggggggcttagatcgattcacccgtcttcccatgc
gi|5 : caagATTTAGCTTCAAATGACA--CCGAgaatatgcaatacaaatgcatttactaccgttttcttctgcgataatttaattaaaagactgcattcattgtctcttatctcccaaaactgcaacaaaacagggctcgactgctcgatttcccatatgctttgtactgataccgcacagaataagcacgcgattttgattggctgcacgctcatcgaaaattacgtttggacattttatggaaagagagtgtacaacaaaatcggtgtcatttgaagctaaatacct
gi|6 : caagatatttagcttcaaatgacaccgaatgataccccccataagaatgtcggccttcttagctcccaaagaatatgcaatacaaatgcatttactaccgttttcttctgcgataatttaattaaaagactgcattcattgtctcttatctcccaaaactgcaacaaaacagggctcgactgctcgatttcccatatgctttgtactgataccgcacagaataagcacgcgattttgattggctgcacgctcatcgaaaattacgtttggacattttatggaaagagagtgtacaacaaaaATGAGG-TGCCGATTTTGGT--TTTTGA-GGT-ATGTTTTCTGA-TA--TCAGAAATCATTTTTTTAGTCA-TCAAAAAATTGAA-TAG-TGAT-TCAAA-AAAAT----G-AT--------TTTCTG---TATCA-----------AAAATTT-CG-ATTT----TCTGATATCA-AAAA-TCTTA--------------------AC--T-----TATTTT--CTGATATTAAGGAGAT-T---TG---A-TTTTTTTATATT-GAAGTTCATTT-----------------------------TT-TTTTA-ATCAATA-AACTGG-TTTTCTTGATATCAG-AAAacct
gi|7 : cacacaatatgAGG-CGCCG-TT--AGTATTTTTGA-T-TTAAACTTTATGA-TAACTCAAAAATAATTTTT--TGATA-TCAGAAATTCCAATTCT-TGATATC--A-GAAAT----C-AT--------TTTTT---ATATCAATTTTCCCCTGAAAA-TA-TG-ATTT----TCTGATAT-A-AAA-----TA------------A-TC-G--AA-----------TTT--ATGATATAAA--AAATGT---TACTCA-TTTTCTTATATCAcatt
gi|8 : ACTTAGCCTGAGATGATA--CC--------CCACT---GAGAAGGCCTGTCTCTTGAGCTTCCA
gi|9 : acaaggtTC-TAATATC-AA-AAGTT----TTAT--------TTTCTG--ATATCA-----------AAAA-AT-CG-ATTA----CCTGAAATAA-AGAATTCTTCTT----TT--TTA-TCAGAAAA--TCAAAATATTTT--CTGATATCAA--AAAT-T---GA---A--TTTCTGAAGTAAGAAAATCG-CT-AAA-----T-----GAT-----------TT-TCTGATATCAAAA-AATCAA-gggagtatgtgatgaaaatgtatttacacaataatttatctacaaatctatgtatggtatgacggcatttattgtcttttctagaaaaactgcaatagaacatggctttaca
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAAACGATTGGAGATGAATTCAAAATAGAAGGCAAAATTACGATTTTATTAGTGACCATTGGCCATAATTGATCATGTTTGATATTACTTAGCTAGTAACATTAGGAAAAGAAAACAATACCACAAAGATAAAGGAGACTCCACCCTTCTCCCCCAT
Unaligned ( gi|12 ): TTCAAAATGATTATTTTAATGGTGATCATTGACCATGATTGATCTTATTTAGTTAGTAACATTGGGTTAAGAACAACATACTACAAAAAATGAGAAGGAAGAGACGGGGGTCACCCCTCTCGTCCATGTT
Unaligned ( gi|16 ): TACTGACACTGTGCACAGATTTGATTGGCTGGCATGCACTTCTGAAATTATGTTTTGAAATCTTGGAATTTATCTAT
Unaligned ( gi|17 ): CAACAAGGTACTTAGCCTGAGATGATACACCACACTGAGAAGGCCTGTCTTCTTTGAGCTTCCAGGGAG
Unaligned ( gi|19 ): TATCTACAAAACAAGACATAACACGACTGCATTTATTGCCACTTATCTCCG