lowQualScore : 111 1111 1111 2 7777777777777777777777777777 1 1 11111 22222 11 333333 333333 1111 3 444444444444 1 1 111 88888888888888888888888888888888888888888888 11 11 111111 1111 555 1 11111111 111
lowQualScore : 8888 4 333 5 3 7777 66 5 8 8 2222 0 3 8 4 0 0000000000000000000000000000 8 0 8 0 1 3 4 2 6 44 6 77777 99999 00 1 6 1 1 0 88 5 444444 3 6 8 111111 88 6 6 99 4444 8 0 2 111111111111 8 8 0 5 3 0 444 000 66666666666666666666666666666666666666666666 77 5 5 3 2 88 5 5 5 888 44 5 11 5 111111 0000 777 3 4 33333333 55 55 4 000
lowQualScore : .... . ... . . .... .. . . . .... . . . . . ............................ . . . . . . . . . .. . ..... ..... .. . . . . . .. . ...... . . . ...... .. . . .. .... . . . ............ . . . . . . ... ... ............................................ .. . . . . .. . . . ... .. . .. . ...... .... ... . . ........ .. .. . ...
lowQualScore : 5555 0 666 0 2 0000 99 7 0 0 6666 8 8 0 0 8 2222222222222222222222222222 0 8 0 8 4 5 8 0 7 22 7 77777 33333 33 7 7 0 0 7 77 7 222222 5 7 0 000000 22 7 7 22 2222 0 8 0 888888888888 0 0 8 6 2 0 888 555 22222222222222222222222222222222222222222222 99 0 0 4 0 66 0 0 0 888 44 0 99 0 999999 6666 555 3 4 77777777 55 55 0 222
consensus : AGGCTTTCAAGCGGG----C-CC-T-ATTTTCCTAAT-TTTCCTTAT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGCT-CCAAATTCCT-AA-AAATCCCTTATTTTTCCA-TGAAAATCCTAATTTTTACA-------AAAAAA---AAAA-------TTCGATAAG-TAAGACTTCACTTG-CTAAAAAGTCAAAAAGTAGT-CAAATCAAACTT-TATATAGTATACTTTCAGATAGTGG---T-GTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTG-TGGTTATCAGCAT-NATTCAGCATGGATTT-GTGTACCATACACAACAGATCAT-TT-----CTTATGGTTACTTTGAAATACTGAA-TACCCGTGT--TGA----CACTTGTATG-ATCTTCTATGATGGTAATTT-----------GTA-TAT-GGTATTTTATGTAACCTGTTGGTAAGT-ACAAATTAAATTCATTGGGGGG------------------TTAA---------TT---------TACCCCTTAT--TTT-TGCCT-GAAAATTCCTAAAATA-TCC-TAAAA-ATA-GCCCT---TAT-TT-TTTTAAGA--ATT-TT--G---CC----CTAAAAAAGG-CCT-T-A------TTT--TTC--ACAAAAAGTCA-CTTG-AAAGCCT
Reference ( gi|2 ) : AGGCTTTCAAGCGGG----C-CC-T-ATTTTCCTAAT-TTTCCTTAT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGCT-CCAAATTCCT-AA-AAATCCCTTATTTTTCCA-TGAAAATCCTAA-TTTTACA-------AAAAAA---AAA--------TTCGATAAG-TAAGACTTCACTTG-CTAATAAGTCAAAAAGCAGT-CAAATCAAACTT-TATATAGTATACTTTCAGATAGTGG---T-GTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTA-TGGTTATCAGCAT-T-TTGAACATGGATTT-GTGTACCATACACAACAGATCAT-T------CTTATGGTTACCCTGAAATACTGAA-TACCCGTAT--TGA----CACTTGTATG-ATCTTCTATGATGG-AATTT-----------GTA-TAT-GGTATTTTATGTAACCTGTTGGTAAGT-ACAAATTAAATTCATTGGGGTG------------------TTAA---------TT---------TACCCCTTAT--TTT-TGCCT-GAAAATTCCTAAAATA-TCC-TAAAA-ATA-GCCCT---TAT-TT-TTTTAAGA--ATT-TT--G---CC----CT---AAAGG-CCT-T-A------TTT--TTC--ACAAAAAGTCA-CTTG-GAAGCCT
gi|3 : AGGCTTTCAAGCGGG----C-CC-T-TATTTCCTAAT-TTTCCT-AT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGCT-CCAAATTCCT-AA-AA-TCCCTTATTTTTCCA-TGAAAATCCTAA-TTT-ACA-------AAAAAA---AAAA-------TTCGATAAG-TAAGACTTCACTTG-CTAATAAGTCAAAAAGCAGT-CAAATCAAACTT-TATATAGTATACTTTCAGATAGTGG---TTGTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTA-TGGTTATCAGCAT-T-TTGAACATGGATTT-GTGTACCATACACAACAGATCAT-T------CTTATGGTTACCTTGAAATACTGAA-TACCCGTAT--TGA----CACTTGTATG-ATCTTC-ATGATGGTAATTT-----------GTA-TATAGGTATTTTAT-TAACCTGTTGGTAAGT-ACAAATT-AATTCATTGGGGTG------------------TTAA---------TT---------TACCCCTTAT--TTT-TGCCT-GAAAATTCCTAAAATT-ACC-TAAAA-ATA-GCCCT---TAT-TT-TTTTAAGA--ATT-TT------CC----CTAA-AAAGG-CCC-T-A------TTT--TTC--ACAAAAAGTCA-CTTGAAAAGCC
gi|4 : AGGCTTTCAA-CGGG----C-CC-TTATTTTCCTAAT-TTTCCT-ATA--TTTTT--ATCAGAAGGCCCTTATTTTTCCTTATTTAAGCT-CCAAATTCCT-AA-AAATCCCTTATTTT-CCA-TGAAAATCCTAA-TTTTACA-------AATAAT---T----------TTTCATAAGATAAGACTTCACTTG-CTAAAAAGTCAAAAAGTA-T-CAAATCAAACTT--ATATAGTATACTTTCAGATA-TGA---TTGTGTT---ATCAATGTATT-TCTGTGAA-ACATGCTG-TGGT-ATT-GCAT-AATTCAGCATGGATTT-GTGTACCATACATAACA--TCAT-TT-----CTTATGGTTACTTTGAA-TACTGAA-TACCCGTGT--TGA----CACTTGTATG-ATTTTCTATGATGT-AATT-------------TA-TAT-GGTATTTTATGTAACCTGTT-GTAAGT-ACAA--TAATTTCATTGGGGGG------------------TTAATTAGGAAGTTT---------TACCCCTTA---TTT-TGTCT-GAAAA-TCCTAAAATA-TCCTTAAAA-ATA--CCCT---TA--AA-TTTTAAGA--A-T-TT--G---CC----CTAAAAAAGG-CCC-TAA------TTT--TTC--ACAAAAAGTCA-CTT---AAGCC
gi|1 : cAGGCTTTCAAGCGGG----C-CC-TTATTTTCCTAAT-TTTCCTTAT---TTTTG--TTCAGA-GGCCCTTATTTC-CTTTATTTAAGCTTCCAAATTCCTTAA-AAATCCCTTATTTTTCCA-TGAAATCCTTAATTTTTAC--------AAAAAA---AAA--------TTCGATAAG-TAAGACTTCACTTGCCTAAAAAGTCAAAAAGTA-T-CAAATC-AACTT-TATA-A------TTTCAGATAGTGGAGTT-GTGTTAAAATCAATGT-TA-TCT-TGAAGACATGCTG-TGGTTATCAGCATAA-TTCAGCATGGATTTGGTGTACCATACACAACAGATTAT-T------CTTTTGGTTACTTTGGAATACTGAAGTACCCGT-TCGTGA----CACTTGTATGAATCTTCTTTGATGGTAATTT-----------GTA-TAT-GGTATATT-TGTAA-CTGTTGGTAAGTAACACACTTAATTCATTGGGGGGGGGAGGGGGGGGGGGTAATTAGGAAGT----TT---------TACCCCTTAT--CTT-TGTCT-TACAATTCA-AAAATAGTCC-T--AA-ACA-G--CT---TAT-TT-TTGTAAGA--TTTGTT--G----C----CTAAAAAAGG-CCTCT-A------TTT--TTC--ACAAAAAGTCA-CTTG-AAAGCCT
gi|9 : acAGGCTTTCAAGCGGG----C-CCTT-ATTTT-CTAATGTTTCCTTA----TTTTT--GTCAGA-GG-CCTTATTTT-CCTTATTTAAGCT-C--AATTCTT----AAATCCCTTATTTTTCCAGTGAAAATCCTAATTTTTACATTTTTTT--------------------TTCGATAAG-TAAGACTTTACTTG-CTAAAAAGTCAAA----AGTGCAAATCAAACTTATATAT-GAATACTTTCAGATAG-GG---T-TTGTG-AAATC-ATGTATTCTCTGTGAAGACATGCTG-TGGTg
gi|7 : cAGGTTTTCAAACGGG----C-CT-T-CTTCTCCTAAT-TTTCCTTAT---TTTTT--GTCGAA-GGCCCTTATTTT-CCTTATTAAAGCT-CCAAAATCCT-AATAAAT-CCTTATTTTCTCA-TGAAAATCCTAAGTTTTAAA-------AAAAAATCTAAAAATGTTGTTTTGATAAG-CAAA---TCA--TG-CT--------GAAAAATAAT-CAAAT-GAAGTC-TAT---GTGTACTTTTAGATAGTAAT--T-GTGTT-GAATCAATGTATT-TTTATGAAG---------------TTAGCAT-TATTCAGCATGGAATT-GTGTACCATATATA
gi|14 : cacAGGCTTTCAAGTGGG----C-CT-A-ATTTTCCTTAT-TTTTTTTATCACTTTTTTGGTCAGA-GGCC
gi|15 : AGGCTTTCAACCAGG----CACT-T-ATTTTCCAAAT-TTTCCTTA----TTTTT--GTACGA-GG
gi|20 : tgcAGGCTTTCAAGCGGG----C-CCTT-ATTTTC
gi|18 : cAGGCTTTCAAGCGGG----C-CCTT-ATTTTC
gi|16 : ttaacGGCTTTCAAGCGGGGCAAT-CT-T-ATTTTCCTAAT-TTTCCTTAT---TTTTT--G
gi|8 : AAATAGTAAT-TACATAAAGCCT-TA----GCATACTTTCAGATAGTGAC--T-GTGTT-GAATAGATATATT-TCTGTGAAAAGAT-TTAGTGGTCTTCATTAT-T-C--AGCATGAATTC-ATGTATTAT-TATAACAGAACAT-TTTCTTTCTTATGGTTAGACTGAAATATCGAA-TATCCATAT--TGATGACCAGCAGTATG-ATCTTGTATGATGGTAATTCAATTAAGACCAGCAGTAT-GGCATT---TGTAA--TGATGGTAA
gi|5 : tgtATGGTG-TGGTTATCAGCAT-AATTCAGCATGGATTT-GTGTACCATACACAACAGATCCTAT------TTTATGGTCACTTTGAAATACTAAA-TACCCGTGT--TGA----CACTTGTATG-ATCTTCTATGATCATAATTT-----------GTA-TAT-GGTATTTTATGTAATCTGTAGGCAAGT-ACAGATTAA-TTCATTGGGGGG------------------TTAA---------TTAGGAAGTTTTACCCCTTAT--TTT-TGTCT-GAAAATTCCTAAAATA-TCC-TAATA-ATA-GCCCT---TA--TT-TTTTAAGA--ATT-TT--G---CC----CTAAAAAAGGCCCT-T-A------TTT--TTC--ACAAAAAGTCA-CTTG-AAAGCC
gi|6 : GGTTACTTTGAAATACTGAA-TACCCTTGT--TGA----
gi|12 : ttttttccaATTGAGAAG------------------TT------------T---------TACCCCTTAT--TTT-TGCTTCGAAAATTTCGAATATT-TCA-TAAAA-ATACGCCCA---TATATT-TTTTAAGAATATT-TT--G---CCCACTCT---AAATC-GCT-T--------TTT--TTCATATAAAAAGTCA-TT---GAAGCCtgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcctgaaaattcctaaaatatcctaaaaatccctattgttttaagaattctgccctaaaaaaggcccttattttcacaaaaaatcacttgaagcctg
gi|10 : AG---------TT---------TACCCCCTATATTTTATGCTT-GGAA-----CAAAAT---CC-TAAAAAATA-GCCCTATATAT-TTATTATAAGAC-ATT-TTTAGCACCC----CTAA-AAAAG-CCC-T-AACCTACTTTCCTTC--AT-GAAAGTCATCTTG-AAAGCCc
gi|11 : tcattaagaa---------TT---------TACCCCTACT--TTT-TGTTT-GAAAAATCTTAAAATA-TCC-TAAAA-ATA-GCCCT---TA--TT-ATTTAAGA--TTT-TA--G---CC----CTGAAAAAGGCCCT-T-A------TTT--TTC--ACAAATAGTCA-CTTG-AAAGCCT
gi|6 : tttataaggaagt-TGCCT-GAAAATTCCTAAAATA-TCC-TAAAA-AT----CCC---TAT-TG-TTTTAAGA--ATT-CT--G---CC----CTAAAAAAGGCCCT-T-A-------TT--TTC--ACAAAAAATCA-CTT--GAAGCCTgt
gi|17 : ttttttccaggttactttgaaatactgaatacccttgttgatgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-CCT-T-A------TTT--TTC--ACAAATAGTCA-CTTG-AAATCCTg
gi|19 : tT--TTC--ACAAAAAGTCA-CTTG-AAAGCCTg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): ACTTCGTTGGGAATTACGGGTTTGCCGCTTGCTTCCGTGGCCTGAGAAACGAACACTCGAAAATCCTGCAACATACAACAGTCATATACCTAAAAATCCTCCAATATACAACACTTATAGCCTGATAAAT
Alignments
lowQualScore : 111 444444444444444444444 1 333 11111111 1111 333333333333 1 8888888888888888888888888888888 11 11 1 1111
lowQualScore : 7777 3 111 4 4 9999 66 5 6 6 6 6 6 3 3 999999999999999999999 6 6 3 0 6 00 7 9999 0 222 77 0 5 0 66 5 88888888 0 5 77 2222 6 2 333333333333 6 6 3 9 8 0 5 1 0000000000000000000000000000000 66 4 4 2 0 66 4 4 4 777 11 4 00 4 66 777 66 6 2 2222 4 666 55 3 77
lowQualScore : .... . ... . . .... .. . . . . . . . . ..................... . . . . . .. . .... . ... .. . . . .. . ........ . . .. .... . . ............ . . . . . . . . ............................... .. . . . . .. . . . ... .. . .. . .. ... .. . . .... . ... .. . ..
lowQualScore : 7777 6 555 4 4 7777 11 0 7 7 7 7 7 2 2 777777777777777777777 7 7 7 1 0 99 1 9999 3 999 44 1 7 1 00 7 55555555 1 7 99 1111 7 5 333333333333 7 7 2 3 0 8 8 0 4444444444444444444444444444444 99 4 4 0 8 77 4 4 4 888 88 4 66 4 11 888 11 2 0 5555 0 444 00 6 11
consensus : AGGCTTTCAAGCGGG----C-CC-T-ATTTTCCTAAT-TTTCCT-TAT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTATTTTTCCA-TGAAAATCCTAATTTTTACAAAAAAA---AAAA-------TTCGATAAG-TAAGACTTCACTTG-CTAAAAAGTCAAAAAGTAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTGGT--TGTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTGTGGTTATCAGCATNATTCAGCATGGATTT-GTGTACCATACACAACAGATCATTT-----CTTATGGTTACTTTGAAATACTGAA-TACCCGT--GTTGA----CACTTGTATG-ATCTTCTATGATGGTAATTT-----------GTA-TAT-GGTATTTTATGTAACCTGTTGGTAAGT-ACAAATTAAATTCATTGGGGGG------------------TTAA--AG-----TTTACCCCTTAT--TTT-TGCCT-GAAAATTCCTAAAATA-TCC-TAAAAA-TA-GCCCT---TAT-TTTTT-TAAGA--ATT-TT--GC---C--CTAAAAAAGG-CCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
Reference ( family-2851 ) : AGGCTTTCAAGCGGG----C-CC-T-ATTTTCCTAAT-TTTCCT-TAT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTATTTTTCCA-TGAAAATCCTAATTTTTACAAAAAAA---AAAA-------TTCGATAAG-TAAGACTTCACTTG-CTAAAAAGTCAAAAAGTAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTGG---TGTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTGTGGTTATCAGCATNATTCAGCATGGATTT-GTGTACCATACACAACAGATCATTT-----CTTATGGTTACTTTGAAATACTGAA-TACCCGT--GTTGA----CACTTGTATG-ATCTTCTATGATGGTAATTT-----------GTA-TAT-GGTATTTTATGTAACCTGTTGGTAAGT-ACAAATTAAATTCATTGGGGGG------------------TTAA---------TTTACCCCTTAT--TTT-TGCCT-GAAAATTCCTAAAATA-TCC-TAAAAA-TA-GCCCT---TAT-TTTTT-TAAGA--ATT-TT--GC---C--CTAAAAAAGG-CCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
gi|1 : AGGCTTTCAAGCGGG----C-CC-TTATTTTCCTAAT-TTTCCT-TAT---TTTTG--TTCAGA-GGCCCTTATTTC-CTTTATTTAAGCTTCCAAATTCCTTAA-AAATCCCTTATTTTTCCA-TGAAATCCTTAATTTTTAC--AAAAA---AAAA-------TTCGATAAG-TAAGACTTCACTTGCCTAAAAAGTCAAAAAGTA-TCAAATC-AACTTTATA-A-------TTTCAGATAGTGGAGTTGTGTTAAAATCAATGT-TA-TCT-TGAAGACATGCTGTGGTTATCAGCATAATTCAGCATGGATTTGGTGTACCATACACAACAGATTA-TT-----CTTTTGGTTACTTTGGAATACTGAAGTACCCGTTCG-TGA----CACTTGTATGAATCTTCTTTGATGGTAATTT-----------GTA-TAT-GGTATATT-TGTAA-CTGTTGGTAAGTAACACACTTAATTCATTGGGGGGGGGAGGGGGGGGGGGTAATTAGGAAGT----TTTACCCCTTAT--CTT-TGTCT-TACAATTCA-AAAATAGTCC-T--AAA-CA-G--CT---TAT-TTTTG-TAAGA--TTTGTT--G----C--CTAAAAAAGG-CCTC---T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
gi|10 : acAG---------TTTACCCCCTATATTTTATGCTT-GGAA-----CAAAAT---CC-TAAAAAATA-GCCCTATATAT-TTATTATAAGAC-ATT-TTTAGCACCC--CTAAAAAAGC-CCTAACCT-ACTTTCCTTC--AT-GAAAGTCATCTTG-AAAGCCg
gi|11 : tcattaagaa---------TTTACCCCTACT--TTT-TGTTT-GAAAAATCTTAAAATA-TCC-TAAAAA-TA-GCCCT---TA--TTATT-TAAGA--TTT-TA--GC---C--CTGAAAAAGGCCCT----T-ATTT---TTC--ACAAATAGTCA-CTTG-AAAGCCT
gi|12 : tttataaggaagtATTGAGAAG------------------TT------------TTACCCCTTAT--TTT-TGCTTCGAAAATTTCGAATATT-TCA-TAAAAA-TACGCCCA---TATATTTTT-TAAGAATATT-TT--GC---CCACTCTAAATCG-CTT-------TTT---TTCATATAAAAAGTCA--TTG--AAGCCgt
gi|14 : AGGCTTTCAAGTGGG----C-CT-A-ATTTTCCTTAT-TTTTTT-TATCACTTTTTTGGTCAGA-GGCCc
gi|15 : AGGCTTTCAACCAGG----CACT-T-ATTTTCCAAAT-TTTCCT-TA----TTTTT--GTACGA-GG
gi|16 : tgcGGCTTTCAAGCGGGGCAAT-CT-T-ATTTTCCTAAT-TTTCCT-TAT---TTTTT--G
gi|17 : -CCT----T-ATTT---TTC--ACAAATAGTCA-CTTG-AAATCCT
gi|18 : tAGGCTTTCAAGCGGG----C-CCTT-ATTTTCg
gi|19 : ttaacT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
gi|2 : AGGCTTTCAAGCGGG----C-CC-T-ATTTTCCTAAT-TTTCCT-TAT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTATTTTTCCA-TGAAAATCCTAATTTT-ACAAAAAAA---AAA--------TTCGATAAG-TAAGACTTCACTTG-CTAATAAGTCAAAAAGCAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTGG---TGTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTATGGTTATCAGCATT-TTGAACATGGATTT-GTGTACCATACACAACAGATCATT------CTTATGGTTACCCTGAAATACTGAA-TACCCGT--ATTGA----CACTTGTATG-ATCTTCTATGATGG-AATTT-----------GTA-TAT-GGTATTTTATGTAACCTGTTGGTAAGT-ACAAATTAAATTCATTGGGGTG------------------TTAA---------TTTACCCCTTAT--TTT-TGCCT-GAAAATTCCTAAAATA-TCC-TAAAAA-TA-GCCCT---TAT-TTTTT-TAAGA--ATT-TT--GC---C--CT---AAAGG-CCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-GAAGCCTgca
gi|20 : AGGCTTTCAAGCGGG----C-CCTT-ATTTTC
gi|3 : cAGGCTTTCAAGCGGG----C-CC-T-TATTTCCTAAT-TTTCCT--AT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AA-TCCCTTATTTTTCCA-TGAAAATCCTAATTT--ACAAAAAAA---AAAA-------TTCGATAAG-TAAGACTTCACTTG-CTAATAAGTCAAAAAGCAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTGGT--TGTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTATGGTTATCAGCATT-TTGAACATGGATTT-GTGTACCATACACAACAGATCA-TT-----CTTATGGTTACCTTGAAATACTGAA-TACCCGT--ATTGA----CACTTGTATG-ATCTTC-ATGATGGTAATTT-----------GTA-TATAGGTATTTTAT-TAACCTGTTGGTAAGT-ACAAATT-AATTCATTGGGGTG------------------TTAA---------TTTACCCCTTAT--TTT-TGCCT-GAAAATTCCTAAAATT-ACC-TAAAAA-TA-GCCCT---TAT-TTTTT-TAAGA--ATT-TT---C---C--CT-AAAAAGG-CCC----T-ATTT---TTC--ACAAAAAGTCA-CTTGAAAAGCC
gi|4 : AGGCTTTCAA-CGGG----C-CC-TTATTTTCCTAAT-TTTCCTATAT---TTTT---ATCAGAAGGCCCTTATTTTTCCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTA-TTTTCCA-TGAAAATCCTAA-TTTTAC---AAAT---AATT-------TTTCATAAGATAAGACTTCACTTG-CTAAAAAGTCAAAAAGTA-TCAAATCAAAC-TTATATA-GTATACTTTCAGATA-TGAT--TGTGTT---ATCAATGTATT-TCTGTGAA-ACATGCTGTGG-TATT-GCATAATTCAGCATGGATTT-GTGTACCATACATAAC--ATCATTT-----CTTATGGTTACTTTG-AATACTGAA-TACCCGT--GTTGA----CACTTGTATG-ATTTTCTATGAT-GTAATT-------------TA-TAT-GGTATTTTATGTAACCTGTT-GTAAGT-ACAA--TAATTTCATTGGGGGG------------------TTAATTAGGAAGTTTTACCCCTTA---TTT-TGTCT-GAAAA-TCCTAAAATA-TCCTTAAAAA-TA--CCCT---TA--AATTT-TAAGA--A-T-TT--GC---C--CTAAAAAAGG-CCC----TAATTT---TTC--ACAAAAAGTCA-CTT---AAGCC
gi|5 : cATGGTGTGGTTATCAGCATAATTCAGCATGGATTT-GTGTACCATACACAACAGATCCTAT-----TTTATGGTCACTTTGAAATACTAAA-TACCCGT--GTTGA----CACTTGTATG-ATCTTCTATGATCATAATTT-----------GTA-TAT-GGTATTTTATGTAATCTGTAGGCAAGT-ACAGATT-AATTCATTGGGGGG------------------TTAATTAGGAAGTTTTACCCCTTAT--TTT-TGTCT-GAAAATTCCTAAAATA-TCC-TAATAA-TA-GCCCT---TA--TTTTT-TAAGA--ATT-TT--GC---C--CTAAAAAAGGCCCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCC
gi|6 : GGTTACTTTGAAATACTGAA-TACCCTT--GTTGA----
gi|6 : ttttttcca-TGCCT-GAAAATTCCTAAAATA-TCC-TAAAAA-T----CCC---TAT-TGTTT-TAAGA--ATT-CT--GC---C--CTAAAAAAGGCCCT----T-A-TT---TTC--ACAAAAAATCA-CTTG--AAGCCTtgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcctgaaaattcctaaaatatcctaaaaatccctattgttttaagaattctgccctaaaaaaggcccttattttcacaaaaaatcacttgaagcctg
gi|7 : ttttttccaggttactttgaaatactgaatacccttgttgatgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGGTTTTCAAACGGG----C-CT-T-CTTCTCCTAAT-TTTCCT-TAT---TTTTT--GTCGAA-GGCCCTTATTTT-CCTTATTAAAGC-TCCAAAATCC-TAATAAAT-CCTTATTTTCTCA-TGAAAATCCTAAGTTTTAAAAAAAAATCTAAAAATGTTGTTTTGATAAG-CAAA---TCA--TG-CT--------GAAAAATAATCAAAT-GAAGTCTAT----GTGTACTTTTAGATAGTAAT--TGTGTT-GAATCAATGTATT-TTTATGAAG--------------TTAGCATTATTCAGCATGGAATT-GTGTACCATATATAg
gi|8 : cacAAATAGTAATTACATAAAGCCTTA-----GCATACTTTCAGATAGTGAC--TGTGTT-GAATAGATATATT-TCTGTGAAAAGATTTAGTGGTCTTCA---TTATTCAGCATGAATTC-ATGTATTAT-TATAACAGAACATTTTCTTTCTTATGGTTAGACTGAAATATCGAA-TATCCAT--ATTGATGACCAGCAGTATG-ATCTTGTATGATGGTAATTCAATTAAGACCAGCAGTAT-GGCATT---TGTAA--TGATGGTAA
gi|9 : tgtAGGCTTTCAAGCGGG----C-CCTT-ATTTT-CTAATGTTTCCT-TA----TTTTT--GTCAGA-GG-CCTTATTTT-CCTTATTTAAGC-TC--AATTCT-T---AAATCCCTTATTTTTCCAGTGAAAATCCTAATTTTTAC-------------ATTTTTTTTTCGATAAG-TAAGACTTTACTTG-CTAAAAAGTC-AAAAGTG--CAAATCAAAC-TTATATATGAATACTTTCAGATAG-GG---TTTGTG-AAATC-ATGTATTCTCTGTGAAGACATGCTGTGGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACTTCGTTGGGAATTACGGGTTTGCCGCTTGCTTCCGTGGCCTGAGAAACGAACACTCGAAAATCCTGCAACATACAACAGTCATATACCTAAAAATCCTCCAATATACAACACTTATAGCCTGATAAAT
Alignments
lowQualScore : 111 1 444444444444444444444 1 333333 1111 333333333333 1 777777777777777777777777777777777 1 11 11 1 1111
lowQualScore : 7777 3 111 4 4 9999 66 5 6 6 6 6 6 1 999999999999999999999 6 6 3 0 6 00 7 9999 0 77 0 77 0 5 0 33 66 5 222222 0 5 77 2222 6 2 333333333333 6 6 3 9 8 0 5 333333333333333333333333333333333 0 5 66 4 2 0 4 4 4 4 777 11 4 00 4 999999 66 6 2 2222 4 666 55 3 77
lowQualScore : .... . ... . . .... .. . . . . . . . ..................... . . . . . .. . .... . .. . .. . . . .. .. . ...... . . .. .... . . ............ . . . . . . . ................................. . . .. . . . . . . . ... .. . .. . ...... .. . . .... . ... .. . ..
lowQualScore : 7777 6 555 4 4 7777 11 0 7 7 7 7 7 3 777777777777777777777 7 7 7 1 0 99 1 9999 3 99 1 44 1 7 1 11 00 7 222222 1 7 99 1111 7 5 333333333333 7 7 2 3 0 8 8 111111111111111111111111111111111 0 0 11 4 0 8 4 4 4 4 888 88 4 66 4 444444 11 2 0 5555 0 444 00 6 11
consensus : AGGCTTTCAAGCGGG----C-CC-T-ATTTTCCTAAT-TTTCCT-TAT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTATTTTTCCA-TGAAAATCCTAATTTTTAC-AAAAAA---AAAA-------TTCGATAAG-TAAGACTTCACTTG-CTAAAAAGTCAAAAAGTAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTG--GTTGTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTGTGGTTATCAGCATNATTCAGCATGGATTT-GTGTACCATACACAACAGATCA-----TTTCTTATGGTTACTTTGAAATACTGAA-TACCCGT--GTTGA----CACTTGTATG-ATCTTCTATGATGGTAATTT-----------GTA-TAT-GGTATTTTATGTAACCTGTTGGTAAGT-ACAAATTAAATTCATTGGGGGG------------------TTA--A--AG-----TTT-ACCCCTTAT-TTT--TGCCT-GAAAATTCCTAAAATA-TCC-T-AAAAATA-GCCCT---TAT-TT-TTTTAAGA--ATT-TT--G---CC--CTAAAAAAGG-CCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
Reference ( family-2851 ) : AGGCTTTCAAGCGGG----C-CC-T-ATTTTCCTAAT-TTTCCT-TAT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTATTTTTCCA-TGAAAATCCTAATTTTTACAAAAAAA---AAAA-------TTCGATAAG-TAAGACTTCACTTG-CTAAAAAGTCAAAAAGTAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTG--GTTGTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTGTGGTTATCAGCATNATTCAGCATGGATTT-GTGTACCATACACAACAGATCA-----TTTCTTATGGTTACTTTGAAATACTGAA-TACCCGT--GTTGA----CACTTGTATG-ATCTTCTATGATGGTAATTT-----------GTA-TAT-GGTATTTTATGTAACCTGTTGGTAAGT-ACAAATTAAATTCATTGGGGGG------------------TTA--A--AG-----TTT-ACCCCTTAT-TTT--TGCCT-GAAAATTCCTAAAATA-TCC-T-AAAAATA-GCCCT---TAT-TT-TTTTAAGA--ATT-TT--G---CC--CTAAAAAAGG-CCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
gi|1 : AGGCTTTCAAGCGGG----C-CC-TTATTTTCCTAAT-TTTCCT-TAT---TTTTG--TTCAGA-GGCCCTTATTTC-CTTTATTTAAGCTTCCAAATTCCTTAA-AAATCCCTTATTTTTCCA-TGAAATCCTTAATTTTTAC--AAAAA---AAAA-------TTCGATAAG-TAAGACTTCACTTGCCTAAAAAGTCAAAAAGTA-TCAAATC-AACTTTATA-A-------TTTCAGATAGTGGAGTTGTGTTAAAATCAATGT-TA-TCT-TGAAGACATGCTGTGGTTATCAGCATAATTCAGCATGGATTTGGTGTACCATACACAACAGATTA------TTCTTTTGGTTACTTTGGAATACTGAAGTACCCGTTCG-TGA----CACTTGTATGAATCTTCTTTGATGGTAATTT-----------GTA-TAT-GGTATATT-TGTAA-CTGTTGGTAAGTAACACACTTAATTCATTGGGGGGGGGAGGGGGGGGGGGTAATTAGGA--AGT----TTT-ACCCCTTAT-CTT--TGTCT-TACAATTCA-AAAATAGTCC-T---AAACA-G--CT---TAT-TT-TTGTAAGA--TTTGTT--G----C--CTAAAAAAGG-CCTC---T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
gi|10 : acA--A--AG-----TTT-ACCCCCTATATTTTATGCTT-GGAA-----CAAA--A-TCC-TAAAAAATA-GCCCTATATAT-TTATTATAAGAC-ATT-TTTAGCACCC--CTAAAAAAGC-CCTAACCT-ACTTTCCTTC--AT-GAAAGTCATCTTG-AAAGCCg
gi|11 : tcattaag--A--AG-----TTTTACCCCTACT-TTT--TGTTT-GAAAAATCTTAAAATA-TCC-T-AAAAATA-GCCCT---TA--TT-ATTTAAGA--TTT-TA--G---CC--CTGAAAAAGGCCCT----T-ATTT---TTC--ACAAATAGTCA-CTTG-AAAGCCT
gi|12 : tttataagg--A--AG-----TTTTACCCCTTAT-TTT--TGCTTCGAAAATTTCGAATATT-TCA-T-AAAAATACGCCCA---TATATT-TTTTAAGAATATT-TT--G---CCCACTCTAAATCG-CTT-------TTT---TTCATATAAAAAGTCA--TTG--AAGCCgt
gi|14 : attgagAGGCTTTCAAGTGGG----C-CT-A-ATTTTCCTTAT-TTTTTT-TATCACTTTTTTGGTCAGA-GGCCc
gi|15 : AGGCTTTCAACCAGG----CACT-T-ATTTTCCAAAT-TTTCCT-TA----TTTTT--GTACGA-GG
gi|16 : tgcGGCTTTCAAGCGGGGCAAT-CT-T-ATTTTCCTAAT-TTTCCT-TAT---TTTTT--G
gi|17 : -CCT----T-ATTT---TTC--ACAAATAGTCA-CTTG-AAATCCT
gi|18 : tAGGCTTTCAAGCGGG----C-CCTT-ATTTTCg
gi|19 : ttaacT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
gi|2 : AGGCTTTCAAGCGGG----C-CC-T-ATTTTCCTAAT-TTTCCT-TAT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTATTTTTCCA-TGAAAATCCTAA-TTTTAC-AAAAAA---AAAA-------TTCGATAAG-TAAGACTTCACTTG-CTAATAAGTCAAAAAGCAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTG--G-TGTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTATGGTTATCAGCATT-TTGAACATGGATTT-GTGTACCATACACAACAGATCA------TTCTTATGGTTACCCTGAAATACTGAA-TACCCGT--ATTGA----CACTTGTATG-ATCTTCTATGATGG-AATTT-----------GTA-TAT-GGTATTTTATGTAACCTGTTGGTAAGT-ACAAATTAAATTCATTGGGGTG------------------TTA--A---------TTT-ACCCCTTAT-TTT--TGCCT-GAAAATTCCTAAAATA-TCC-T-AAAAATA-GCCCT---TAT-TT-TTTTAAGA--ATT-TT--G---CC--CT---AAAGG-CCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-GAAGCCTgca
gi|20 : AGGCTTTCAAGCGGG----C-CCTT-ATTTTC
gi|3 : cAGGCTTTCAAGCGGG----C-CC-T-TATTTCCTAAT-TTTCCT--AT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AA-TCCCTTATTTTTCCA-TGAAAATCCTAATTT--ACAAAAAAA---AAAA-------TTCGATAAG-TAAGACTTCACTTG-CTAATAAGTCAAAAAGCAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTG--GTTGTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTATGGTTATCAGCATT-TTGAACATGGATTT-GTGTACCATACACAACAGATCA------TTCTTATGGTTACCTTGAAATACTGAA-TACCCGT--ATTGA----CACTTGTATG-ATCTTC-ATGATGGTAATTT-----------GTA-TATAGGTATTTTAT-TAACCTGTTGGTAAGT-ACAAATT-AATTCATTGGGGTG------------------TTA--A---------TTT-ACCCCTTAT-TTT--TGCCT-GAAAATTCCTAAAATT-ACC-T-AAAAATA-GCCCT---TAT-TT-TTTTAAGA--ATT-TT------CC--CT-AAAAAGG-CCC----T-ATTT---TTC--ACAAAAAGTCA-CTTGAAAAGCC
gi|4 : AGGCTTTCAA-CGGG----C-CC-TTATTTTCCTAAT-TTTCCTATAT---TTTT---ATCAGAAGGCCCTTATTTTTCCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTA-TTTTCCA-TGAAAATCCTAA-TTTTAC---AAAT---AATT-------TTTCATAAGATAAGACTTCACTTG-CTAAAAAGTCAAAAAGTA-TCAAATCAAAC-TTATATA-GTATACTTTCAGATA-TG--ATTGTGTT---ATCAATGTATT-TCTGTGAA-ACATGCTGTGG-TATT-GCATAATTCAGCATGGATTT-GTGTACCATACATAAC--ATCA-----TTTCTTATGGTTACTTTG-AATACTGAA-TACCCGT--GTTGA----CACTTGTATG-ATTTTCTATGAT-GTAATT-------------TA-TAT-GGTATTTTATGTAACCTGTT-GTAAGT-ACAA--TAATTTCATTGGGGGG------------------TTA--ATTAGGAAGTTTT-ACCCCTTA--TTT--TGTCT-GAAAA-TCCTAAAATA-TCCTT-AAAAATA--CCCT---TA--AA-TTTTAAGA--A-T-TT--G---CC--CTAAAAAAGG-CCC----TAATTT---TTC--ACAAAAAGTCA-CTT---AAGCC
gi|5 : cATGGTGTGGTTATCAGCATAATTCAGCATGGATTT-GTGTACCATACACAACAGATCC-----TATTTTATGGTCACTTTGAAATACTAAA-TACCCGT--GTTGA----CACTTGTATG-ATCTTCTATGATCATAATTT-----------GTA-TAT-GGTATTTTATGTAATCTGTAGGCAAGT-ACAGATT-AATTCATTGGGGGG------------------TTA--ATTAGGAAGTTTT-ACCCCTTAT-TTT--TGTCT-GAAAATTCCTAAAATA-TCC-T-AATAATA-GCCCT---TA--TT-TTTTAAGA--ATT-TT--G---CC--CTAAAAAAGGCCCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCC
gi|6 : GGTTACTTTGAAATACTGAA-TACCCTT--GTTGA----
gi|6 : ttttttcca--TGCCT-GAAAATTCCTAAAATA-TCC-T-AAAAAT----CCC---TAT-TG-TTTTAAGA--ATT-CT--G---CC--CTAAAAAAGGCCCT----T-A-TT---TTC--ACAAAAAATCA-CTTG--AAGCCTtgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcctgaaaattcctaaaatatcctaaaaatccctattgttttaagaattctgccctaaaaaaggcccttattttcacaaaaaatcacttgaagcctg
gi|7 : ttttttccaggttactttgaaatactgaatacccttgttgatgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGGTTTTCAAACGGG----C-CT-T-CTTCTCCTAAT-TTTCCT-TAT---TTTTT--GTCGAA-GGCCCTTATTTT-CCTTATTAAAGC-TCCAAAATCC-TAATAAAT-CCTTATTTTCTCA-TGAAAATCCTAAGTTTTAAAAAAAAATCTAAAAATGTTGTTTTGATAAG-CAAA---TCA--TG-CT--------GAAAAATAATCAAAT-GAAGTCTAT----GTGTACTTTTAGATAGTA--ATTGTGTT-GAATCAATGTATT-TTTATGAAG--------------TTAGCATTATTCAGCATGGAATT-GTGTACCATATATAg
gi|8 : cacAAATAGTAATTACATAAAGCCTTA-----GCATACTTTCAGATAGTG--ACTGTGTT-GAATAGATATATT-TCTGTGAAAAGATTTAGTGGTCTT---CATTATTCAGCATGAATTC-ATGTATTAT-TATAACAGAACATTTTCTTTCTTATGGTTAGACTGAAATATCGAA-TATCCAT--ATTGATGACCAGCAGTATG-ATCTTGTATGATGGTAATTCAATTAAGACCAGCAGTAT-GGCATT---TGTAA--TGATGGTAA
gi|9 : tgtAGGCTTTCAAGCGGG----C-CCTT-ATTTT-CTAATGTTTCCT-TA----TTTTT--GTCAGA-GG-CCTTATTTT-CCTTATTTAAGC-TC--AATTCT-T---AAATCCCTTATTTTTCCAGTGAAAATCCTAATTTTTAC-------------ATTTTTTTTTCGATAAG-TAAGACTTTACTTG-CTAAAAAGTC-AAAAGTG--CAAATCAAAC-TTATATATGAATACTTTCAGATAG-G--GTT-TGTG-AAATC-ATGTATTCTCTGTGAAGACATGCTGTGGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACTTCGTTGGGAATTACGGGTTTGCCGCTTGCTTCCGTGGCCTGAGAAACGAACACTCGAAAATCCTGCAACATACAACAGTCATATACCTAAAAATCCTCCAATATACAACACTTATAGCCTGATAAAT
Alignments
lowQualScore : 111 1 4444444444444444444444 1 333333 1111 333333333333 1 777777777777777777777777777777777 1 11 11 1 1111
lowQualScore : 7777 3 111 4 4 9999 66 5 6 6 6 6 6 1 7777777777777777777777 6 6 3 0 6 00 7 9999 0 77 0 77 0 5 0 33 66 5 222222 0 5 77 2222 6 2 333333333333 6 6 3 9 8 0 5 333333333333333333333333333333333 0 5 66 4 2 0 4 4 4 4 777 11 4 00 4 999999 66 6 2 2222 4 666 55 3 77
lowQualScore : .... . ... . . .... .. . . . . . . . ...................... . . . . . .. . .... . .. . .. . . . .. .. . ...... . . .. .... . . ............ . . . . . . . ................................. . . .. . . . . . . . ... .. . .. . ...... .. . . .... . ... .. . ..
lowQualScore : 7777 6 555 4 4 7777 11 0 7 7 7 7 7 3 7777777777777777777777 7 7 7 1 0 99 1 9999 3 99 1 44 1 7 1 11 00 7 222222 1 7 99 1111 7 5 333333333333 7 7 2 3 0 8 8 111111111111111111111111111111111 0 0 11 4 0 8 4 4 4 4 888 88 4 66 4 444444 11 2 0 5555 0 444 00 6 11
consensus : AGGCTTTCAAGCGGG----C-CC-T-ATTTTCCTAAT-TTTCCT-TAT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTATTTTTCCA-TGAAAATCCTAATTTTTACAAAA-AAA---AAA--------TTCGATAAG-TAAGACTTCACTTG-CTAAAAAGTCAAAAAGTAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTG--GTTGTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTGTGGTTATCAGCATNATTCAGCATGGATTT-GTGTACCATACACAACAGATCA-----TTTCTTATGGTTACTTTGAAATACTGAA-TACCCGT--GTTGA----CACTTGTATG-ATCTTCTATGATGGTAATTT-----------GTA-TAT-GGTATTTTATGTAACCTGTTGGTAAGT-ACAAATTAAATTCATTGGGGGG------------------TTA--A--AG-----TTT-ACCCCTTAT-TTT--TGCCT-GAAAATTCCTAAAATA-TCC-T-AAAAATA-GCCCT---TAT-TT-TTTTAAGA--ATT-TT--G---CC--CTAAAAAAGG-CCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
Reference ( family-2851 ) : AGGCTTTCAAGCGGG----C-CC-T-ATTTTCCTAAT-TTTCCT-TAT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTATTTTTCCA-TGAAAATCCTAATTTTTACAAAA-AAA---AAA--------TTCGATAAG-TAAGACTTCACTTG-CTAAAAAGTCAAAAAGTAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTG--GTTGTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTGTGGTTATCAGCATNATTCAGCATGGATTT-GTGTACCATACACAACAGATCA-----TTTCTTATGGTTACTTTGAAATACTGAA-TACCCGT--GTTGA----CACTTGTATG-ATCTTCTATGATGGTAATTT-----------GTA-TAT-GGTATTTTATGTAACCTGTTGGTAAGT-ACAAATTAAATTCATTGGGGGG------------------TTA--A--AG-----TTT-ACCCCTTAT-TTT--TGCCT-GAAAATTCCTAAAATA-TCC-T-AAAAATA-GCCCT---TAT-TT-TTTTAAGA--ATT-TT--G---CC--CTAAAAAAGG-CCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
gi|1 : AGGCTTTCAAGCGGG----C-CC-TTATTTTCCTAAT-TTTCCT-TAT---TTTTG--TTCAGA-GGCCCTTATTTC-CTTTATTTAAGCTTCCAAATTCCTTAA-AAATCCCTTATTTTTCCA-TGAAATCCTTAATTTTTAC-AAA-AAA---AAA--------TTCGATAAG-TAAGACTTCACTTGCCTAAAAAGTCAAAAAGTA-TCAAATC-AACTTTATA-A-------TTTCAGATAGTGGAGTTGTGTTAAAATCAATGT-TA-TCT-TGAAGACATGCTGTGGTTATCAGCATAATTCAGCATGGATTTGGTGTACCATACACAACAGATTA------TTCTTTTGGTTACTTTGGAATACTGAAGTACCCGTTCG-TGA----CACTTGTATGAATCTTCTTTGATGGTAATTT-----------GTA-TAT-GGTATATT-TGTAA-CTGTTGGTAAGTAACACACTTAATTCATTGGGGGGGGGAGGGGGGGGGGGTAATTAGGA--AGT----TTT-ACCCCTTAT-CTT--TGTCT-TACAATTCA-AAAATAGTCC-T---AAACA-G--CT---TAT-TT-TTGTAAGA--TTTGTT--G----C--CTAAAAAAGG-CCTC---T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
gi|10 : acA--A--AG-----TTT-ACCCCCTATATTTTATGCTT-GGAA-----CAAA--A-TCC-TAAAAAATA-GCCCTATATAT-TTATTATAAGAC-ATT-TTTAGCACCC--CTAAAAAAGC-CCTAACCT-ACTTTCCTTC--AT-GAAAGTCATCTTG-AAAGCCg
gi|11 : tcattaag--A--AG-----TTTTACCCCTACT-TTT--TGTTT-GAAAAATCTTAAAATA-TCC-T-AAAAATA-GCCCT---TA--TT-ATTTAAGA--TTT-TA--G---CC--CTGAAAAAGGCCCT----T-ATTT---TTC--ACAAATAGTCA-CTTG-AAAGCCT
gi|12 : tttataagg--A--AG-----TTTTACCCCTTAT-TTT--TGCTTCGAAAATTTCGAATATT-TCA-T-AAAAATACGCCCA---TATATT-TTTTAAGAATATT-TT--G---CCCACTCTAAATCG-CTT-------TTT---TTCATATAAAAAGTCA--TTG--AAGCCgt
gi|14 : attgagAGGCTTTCAAGTGGG----C-CT-A-ATTTTCCTTAT-TTTTTT-TATCACTTTTTTGGTCAGA-GGCCc
gi|15 : AGGCTTTCAACCAGG----CACT-T-ATTTTCCAAAT-TTTCCT-TA----TTTTT--GTACGA-GG
gi|16 : tgcGGCTTTCAAGCGGGGCAAT-CT-T-ATTTTCCTAAT-TTTCCT-TAT---TTTTT--G
gi|17 : -CCT----T-ATTT---TTC--ACAAATAGTCA-CTTG-AAATCCT
gi|18 : tAGGCTTTCAAGCGGG----C-CCTT-ATTTTCg
gi|19 : ttaacT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
gi|2 : AGGCTTTCAAGCGGG----C-CC-T-ATTTTCCTAAT-TTTCCT-TAT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTATTTTTCCA-TGAAAATCCTAA-TTTTACAAAA-AAA---AAA--------TTCGATAAG-TAAGACTTCACTTG-CTAATAAGTCAAAAAGCAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTG--G-TGTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTATGGTTATCAGCATT-TTGAACATGGATTT-GTGTACCATACACAACAGATCA------TTCTTATGGTTACCCTGAAATACTGAA-TACCCGT--ATTGA----CACTTGTATG-ATCTTCTATGATGG-AATTT-----------GTA-TAT-GGTATTTTATGTAACCTGTTGGTAAGT-ACAAATTAAATTCATTGGGGTG------------------TTA--A---------TTT-ACCCCTTAT-TTT--TGCCT-GAAAATTCCTAAAATA-TCC-T-AAAAATA-GCCCT---TAT-TT-TTTTAAGA--ATT-TT--G---CC--CT---AAAGG-CCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-GAAGCCTgca
gi|20 : AGGCTTTCAAGCGGG----C-CCTT-ATTTTC
gi|3 : cAGGCTTTCAAGCGGG----C-CC-T-TATTTCCTAAT-TTTCCT--AT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AA-TCCCTTATTTTTCCA-TGAAAATCCTAATTT--ACAAAAAAAA---AAA--------TTCGATAAG-TAAGACTTCACTTG-CTAATAAGTCAAAAAGCAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTG--GTTGTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTATGGTTATCAGCATT-TTGAACATGGATTT-GTGTACCATACACAACAGATCA------TTCTTATGGTTACCTTGAAATACTGAA-TACCCGT--ATTGA----CACTTGTATG-ATCTTC-ATGATGGTAATTT-----------GTA-TATAGGTATTTTAT-TAACCTGTTGGTAAGT-ACAAATT-AATTCATTGGGGTG------------------TTA--A---------TTT-ACCCCTTAT-TTT--TGCCT-GAAAATTCCTAAAATT-ACC-T-AAAAATA-GCCCT---TAT-TT-TTTTAAGA--ATT-TT------CC--CT-AAAAAGG-CCC----T-ATTT---TTC--ACAAAAAGTCA-CTTGAAAAGCC
gi|4 : AGGCTTTCAA-CGGG----C-CC-TTATTTTCCTAAT-TTTCCTATAT---TTTT---ATCAGAAGGCCCTTATTTTTCCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTA-TTTTCCA-TGAAAATCCTAA-TTTTAC--AA-ATA---ATT--------TTTCATAAGATAAGACTTCACTTG-CTAAAAAGTCAAAAAGTA-TCAAATCAAAC-TTATATA-GTATACTTTCAGATA-TG--ATTGTGTT---ATCAATGTATT-TCTGTGAA-ACATGCTGTGG-TATT-GCATAATTCAGCATGGATTT-GTGTACCATACATAAC--ATCA-----TTTCTTATGGTTACTTTG-AATACTGAA-TACCCGT--GTTGA----CACTTGTATG-ATTTTCTATGAT-GTAATT-------------TA-TAT-GGTATTTTATGTAACCTGTT-GTAAGT-ACAA--TAATTTCATTGGGGGG------------------TTA--ATTAGGAAGTTTT-ACCCCTTA--TTT--TGTCT-GAAAA-TCCTAAAATA-TCCTT-AAAAATA--CCCT---TA--AA-TTTTAAGA--A-T-TT--G---CC--CTAAAAAAGG-CCC----TAATTT---TTC--ACAAAAAGTCA-CTT---AAGCC
gi|5 : cATGGTGTGGTTATCAGCATAATTCAGCATGGATTT-GTGTACCATACACAACAGATCC-----TATTTTATGGTCACTTTGAAATACTAAA-TACCCGT--GTTGA----CACTTGTATG-ATCTTCTATGATCATAATTT-----------GTA-TAT-GGTATTTTATGTAATCTGTAGGCAAGT-ACAGATT-AATTCATTGGGGGG------------------TTA--ATTAGGAAGTTTT-ACCCCTTAT-TTT--TGTCT-GAAAATTCCTAAAATA-TCC-T-AATAATA-GCCCT---TA--TT-TTTTAAGA--ATT-TT--G---CC--CTAAAAAAGGCCCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCC
gi|6 : GGTTACTTTGAAATACTGAA-TACCCTT--GTTGA----
gi|6 : ttttttcca--TGCCT-GAAAATTCCTAAAATA-TCC-T-AAAAAT----CCC---TAT-TG-TTTTAAGA--ATT-CT--G---CC--CTAAAAAAGGCCCT----T-A-TT---TTC--ACAAAAAATCA-CTTG--AAGCCTtgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcctgaaaattcctaaaatatcctaaaaatccctattgttttaagaattctgccctaaaaaaggcccttattttcacaaaaaatcacttgaagcctg
gi|7 : ttttttccaggttactttgaaatactgaatacccttgttgatgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGGTTTTCAAACGGG----C-CT-T-CTTCTCCTAAT-TTTCCT-TAT---TTTTT--GTCGAA-GGCCCTTATTTT-CCTTATTAAAGC-TCCAAAATCC-TAATAAAT-CCTTATTTTCTCA-TGAAAATCCTAAGTTTTAAAAAA-AAATCTAAAAATGTTGTTTTGATAAG-CAAA---TCA--TG-CT--------GAAAAATAATCAAAT-GAAGTCTAT----GTGTACTTTTAGATAGTA--ATTGTGTT-GAATCAATGTATT-TTTATGAAG--------------TTAGCATTATTCAGCATGGAATT-GTGTACCATATATAg
gi|8 : cacAAATAGTAATTACATAAAGCCTTA-----GCATACTTTCAGATAGTG--ACTGTGTT-GAATAGATATATT-TCTGTGAAAAGATTTAGTGGTCTT---CATTATTCAGCATGAATTC-ATGTATTAT-TATAACAGAACATTTTCTTTCTTATGGTTAGACTGAAATATCGAA-TATCCAT--ATTGATGACCAGCAGTATG-ATCTTGTATGATGGTAATTCAATTAAGACCAGCAGTAT-GGCATT---TGTAA--TGATGGTAA
gi|9 : tgtAGGCTTTCAAGCGGG----C-CCTT-ATTTT-CTAATGTTTCCT-TA----TTTTT--GTCAGA-GG-CCTTATTTT-CCTTATTTAAGC-TC--AATTCT-T---AAATCCCTTATTTTTCCAGTGAAAATCCTAATTTTTAC-------------ATTTTTTT-TTCGATAAG-TAAGACTTTACTTG-CTAAAAAGTC-AAAAGTG--CAAATCAAAC-TTATATATGAATACTTTCAGATAG-G--GTT-TGTG-AAATC-ATGTATTCTCTGTGAAGACATGCTGTGGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACTTCGTTGGGAATTACGGGTTTGCCGCTTGCTTCCGTGGCCTGAGAAACGAACACTCGAAAATCCTGCAACATACAACAGTCATATACCTAAAAATCCTCCAATATACAACACTTATAGCCTGATAAAT
Alignments
lowQualScore : 111 1 4444444444444444444444 1 333333 1111 333333333333 1 777777777777777777777777777777777 1 11 11 1 1111
lowQualScore : 7777 3 111 4 4 9999 66 5 6 6 6 6 6 1 7777777777777777777777 6 6 3 0 6 00 7 9999 0 77 0 77 0 5 0 33 66 5 222222 0 5 77 2222 6 2 333333333333 6 6 3 9 8 0 5 333333333333333333333333333333333 0 5 66 4 2 0 4 4 4 4 777 11 4 00 4 999999 66 6 2 2222 4 666 55 3 77
lowQualScore : .... . ... . . .... .. . . . . . . . ...................... . . . . . .. . .... . .. . .. . . . .. .. . ...... . . .. .... . . ............ . . . . . . . ................................. . . .. . . . . . . . ... .. . .. . ...... .. . . .... . ... .. . ..
lowQualScore : 7777 6 555 4 4 7777 11 0 7 7 7 7 7 3 7777777777777777777777 7 7 7 1 0 99 1 9999 3 99 1 44 1 7 1 11 00 7 222222 1 7 99 1111 7 5 333333333333 7 7 2 3 0 8 8 111111111111111111111111111111111 0 0 11 4 0 8 4 4 4 4 888 88 4 66 4 444444 11 2 0 5555 0 444 00 6 11
consensus : AGGCTTTCAAGCGGG----C-CC-T-ATTTTCCTAAT-TTTCCT-TAT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTATTTTTCCA-TGAAAATCCTAATTTTTACAAAA-AAA---AAA--------TTCGATAAG-TAAGACTTCACTTG-CTAAAAAGTCAAAAAGTAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTG--GTTGTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTGTGGTTATCAGCATNATTCAGCATGGATTT-GTGTACCATACACAACAGATCA-----TTTCTTATGGTTACTTTGAAATACTGAA-TACCCGT--GTTGA----CACTTGTATG-ATCTTCTATGATGGTAATTT-----------GTA-TAT-GGTATTTTATGTAACCTGTTGGTAAGT-ACAAATTAAATTCATTGGGGGG------------------TTA--A--AG-----TTT-ACCCCTTAT-TTT--TGCCT-GAAAATTCCTAAAATA-TCC-T-AAAAATA-GCCCT---TAT-TT-TTTTAAGA--ATT-TT--G---CC--CTAAAAAAGG-CCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
Reference ( family-2851 ) : AGGCTTTCAAGCGGG----C-CC-T-ATTTTCCTAAT-TTTCCT-TAT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTATTTTTCCA-TGAAAATCCTAATTTTTACAAAA-AAA---AAA--------TTCGATAAG-TAAGACTTCACTTG-CTAAAAAGTCAAAAAGTAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTG--GTTGTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTGTGGTTATCAGCATNATTCAGCATGGATTT-GTGTACCATACACAACAGATCA-----TTTCTTATGGTTACTTTGAAATACTGAA-TACCCGT--GTTGA----CACTTGTATG-ATCTTCTATGATGGTAATTT-----------GTA-TAT-GGTATTTTATGTAACCTGTTGGTAAGT-ACAAATTAAATTCATTGGGGGG------------------TTA--A--AG-----TTT-ACCCCTTAT-TTT--TGCCT-GAAAATTCCTAAAATA-TCC-T-AAAAATA-GCCCT---TAT-TT-TTTTAAGA--ATT-TT--G---CC--CTAAAAAAGG-CCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
gi|1 : AGGCTTTCAAGCGGG----C-CC-TTATTTTCCTAAT-TTTCCT-TAT---TTTTG--TTCAGA-GGCCCTTATTTC-CTTTATTTAAGCTTCCAAATTCCTTAA-AAATCCCTTATTTTTCCA-TGAAATCCTTAATTTTTAC-AAA-AAA---AAA--------TTCGATAAG-TAAGACTTCACTTGCCTAAAAAGTCAAAAAGTA-TCAAATC-AACTTTATA-A-------TTTCAGATAGTGGAGTTGTGTTAAAATCAATGT-TA-TCT-TGAAGACATGCTGTGGTTATCAGCATAATTCAGCATGGATTTGGTGTACCATACACAACAGATTA------TTCTTTTGGTTACTTTGGAATACTGAAGTACCCGTTCG-TGA----CACTTGTATGAATCTTCTTTGATGGTAATTT-----------GTA-TAT-GGTATATT-TGTAA-CTGTTGGTAAGTAACACACTTAATTCATTGGGGGGGGGAGGGGGGGGGGGTAATTAGGA--AGT----TTT-ACCCCTTAT-CTT--TGTCT-TACAATTCA-AAAATAGTCC-T---AAACA-G--CT---TAT-TT-TTGTAAGA--TTTGTT--G----C--CTAAAAAAGG-CCTC---T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
gi|10 : acA--A--AG-----TTT-ACCCCCTATATTTTATGCTT-GGAA-----CAAA--A-TCC-TAAAAAATA-GCCCTATATAT-TTATTATAAGAC-ATT-TTTAGCACCC--CTAAAAAAGC-CCTAACCT-ACTTTCCTTC--AT-GAAAGTCATCTTG-AAAGCCg
gi|11 : tcattaag--A--AG-----TTTTACCCCTACT-TTT--TGTTT-GAAAAATCTTAAAATA-TCC-T-AAAAATA-GCCCT---TA--TT-ATTTAAGA--TTT-TA--G---CC--CTGAAAAAGGCCCT----T-ATTT---TTC--ACAAATAGTCA-CTTG-AAAGCCT
gi|12 : tttataagg--A--AG-----TTTTACCCCTTAT-TTT--TGCTTCGAAAATTTCGAATATT-TCA-T-AAAAATACGCCCA---TATATT-TTTTAAGAATATT-TT--G---CCCACTCTAAATCG-CTT-------TTT---TTCATATAAAAAGTCA--TTG--AAGCCgt
gi|14 : attgagAGGCTTTCAAGTGGG----C-CT-A-ATTTTCCTTAT-TTTTTT-TATCACTTTTTTGGTCAGA-GGCCc
gi|15 : AGGCTTTCAACCAGG----CACT-T-ATTTTCCAAAT-TTTCCT-TA----TTTTT--GTACGA-GG
gi|16 : tgcGGCTTTCAAGCGGGGCAAT-CT-T-ATTTTCCTAAT-TTTCCT-TAT---TTTTT--G
gi|17 : -CCT----T-ATTT---TTC--ACAAATAGTCA-CTTG-AAATCCT
gi|18 : tAGGCTTTCAAGCGGG----C-CCTT-ATTTTCg
gi|19 : ttaacT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
gi|2 : AGGCTTTCAAGCGGG----C-CC-T-ATTTTCCTAAT-TTTCCT-TAT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTATTTTTCCA-TGAAAATCCTAA-TTTTACAAAA-AAA---AAA--------TTCGATAAG-TAAGACTTCACTTG-CTAATAAGTCAAAAAGCAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTG--G-TGTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTATGGTTATCAGCATT-TTGAACATGGATTT-GTGTACCATACACAACAGATCA------TTCTTATGGTTACCCTGAAATACTGAA-TACCCGT--ATTGA----CACTTGTATG-ATCTTCTATGATGG-AATTT-----------GTA-TAT-GGTATTTTATGTAACCTGTTGGTAAGT-ACAAATTAAATTCATTGGGGTG------------------TTA--A---------TTT-ACCCCTTAT-TTT--TGCCT-GAAAATTCCTAAAATA-TCC-T-AAAAATA-GCCCT---TAT-TT-TTTTAAGA--ATT-TT--G---CC--CT---AAAGG-CCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-GAAGCCTgca
gi|20 : AGGCTTTCAAGCGGG----C-CCTT-ATTTTC
gi|3 : cAGGCTTTCAAGCGGG----C-CC-T-TATTTCCTAAT-TTTCCT--AT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AA-TCCCTTATTTTTCCA-TGAAAATCCTAATTT--ACAAAAAAAA---AAA--------TTCGATAAG-TAAGACTTCACTTG-CTAATAAGTCAAAAAGCAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTG--GTTGTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTATGGTTATCAGCATT-TTGAACATGGATTT-GTGTACCATACACAACAGATCA------TTCTTATGGTTACCTTGAAATACTGAA-TACCCGT--ATTGA----CACTTGTATG-ATCTTC-ATGATGGTAATTT-----------GTA-TATAGGTATTTTAT-TAACCTGTTGGTAAGT-ACAAATT-AATTCATTGGGGTG------------------TTA--A---------TTT-ACCCCTTAT-TTT--TGCCT-GAAAATTCCTAAAATT-ACC-T-AAAAATA-GCCCT---TAT-TT-TTTTAAGA--ATT-TT------CC--CT-AAAAAGG-CCC----T-ATTT---TTC--ACAAAAAGTCA-CTTGAAAAGCC
gi|4 : AGGCTTTCAA-CGGG----C-CC-TTATTTTCCTAAT-TTTCCTATAT---TTTT---ATCAGAAGGCCCTTATTTTTCCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTA-TTTTCCA-TGAAAATCCTAA-TTTTAC--AA-ATA---ATT--------TTTCATAAGATAAGACTTCACTTG-CTAAAAAGTCAAAAAGTA-TCAAATCAAAC-TTATATA-GTATACTTTCAGATA-TG--ATTGTGTT---ATCAATGTATT-TCTGTGAA-ACATGCTGTGG-TATT-GCATAATTCAGCATGGATTT-GTGTACCATACATAAC--ATCA-----TTTCTTATGGTTACTTTG-AATACTGAA-TACCCGT--GTTGA----CACTTGTATG-ATTTTCTATGAT-GTAATT-------------TA-TAT-GGTATTTTATGTAACCTGTT-GTAAGT-ACAA--TAATTTCATTGGGGGG------------------TTA--ATTAGGAAGTTTT-ACCCCTTA--TTT--TGTCT-GAAAA-TCCTAAAATA-TCCTT-AAAAATA--CCCT---TA--AA-TTTTAAGA--A-T-TT--G---CC--CTAAAAAAGG-CCC----TAATTT---TTC--ACAAAAAGTCA-CTT---AAGCC
gi|5 : cATGGTGTGGTTATCAGCATAATTCAGCATGGATTT-GTGTACCATACACAACAGATCC-----TATTTTATGGTCACTTTGAAATACTAAA-TACCCGT--GTTGA----CACTTGTATG-ATCTTCTATGATCATAATTT-----------GTA-TAT-GGTATTTTATGTAATCTGTAGGCAAGT-ACAGATT-AATTCATTGGGGGG------------------TTA--ATTAGGAAGTTTT-ACCCCTTAT-TTT--TGTCT-GAAAATTCCTAAAATA-TCC-T-AATAATA-GCCCT---TA--TT-TTTTAAGA--ATT-TT--G---CC--CTAAAAAAGGCCCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCC
gi|6 : GGTTACTTTGAAATACTGAA-TACCCTT--GTTGA----
gi|6 : ttttttcca--TGCCT-GAAAATTCCTAAAATA-TCC-T-AAAAAT----CCC---TAT-TG-TTTTAAGA--ATT-CT--G---CC--CTAAAAAAGGCCCT----T-A-TT---TTC--ACAAAAAATCA-CTTG--AAGCCTtgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcctgaaaattcctaaaatatcctaaaaatccctattgttttaagaattctgccctaaaaaaggcccttattttcacaaaaaatcacttgaagcctg
gi|7 : ttttttccaggttactttgaaatactgaatacccttgttgatgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGGTTTTCAAACGGG----C-CT-T-CTTCTCCTAAT-TTTCCT-TAT---TTTTT--GTCGAA-GGCCCTTATTTT-CCTTATTAAAGC-TCCAAAATCC-TAATAAAT-CCTTATTTTCTCA-TGAAAATCCTAAGTTTTAAAAAA-AAATCTAAAAATGTTGTTTTGATAAG-CAAA---TCA--TG-CT--------GAAAAATAATCAAAT-GAAGTCTAT----GTGTACTTTTAGATAGTA--ATTGTGTT-GAATCAATGTATT-TTTATGAAG--------------TTAGCATTATTCAGCATGGAATT-GTGTACCATATATAg
gi|8 : cacAAATAGTAATTACATAAAGCCTTA-----GCATACTTTCAGATAGTG--ACTGTGTT-GAATAGATATATT-TCTGTGAAAAGATTTAGTGGTCTT---CATTATTCAGCATGAATTC-ATGTATTAT-TATAACAGAACATTTTCTTTCTTATGGTTAGACTGAAATATCGAA-TATCCAT--ATTGATGACCAGCAGTATG-ATCTTGTATGATGGTAATTCAATTAAGACCAGCAGTAT-GGCATT---TGTAA--TGATGGTAA
gi|9 : tgtAGGCTTTCAAGCGGG----C-CCTT-ATTTT-CTAATGTTTCCT-TA----TTTTT--GTCAGA-GG-CCTTATTTT-CCTTATTTAAGC-TC--AATTCT-T---AAATCCCTTATTTTTCCAGTGAAAATCCTAATTTTTAC-------------ATTTTTTT-TTCGATAAG-TAAGACTTTACTTG-CTAAAAAGTC-AAAAGTG--CAAATCAAAC-TTATATATGAATACTTTCAGATAG-G--GTT-TGTG-AAATC-ATGTATTCTCTGTGAAGACATGCTGTGGT
blockSeqs : GCAA A TT G A TCAC TG A T . . T G T AAAAAAATCTAAAAATGTTGT A . T G T ATAT . G C CA AA . TTTTCT . . TGAC . G CAATTAAGACCA G A A C . A TTAATTAGGAAGT T A TA C A . T A C ATA TA A AT . TAGCAC CA A C AACC A TCC AT T AA
blockSeqs : . . TT . . T . . . . . . . G AAAAAAAAAAA . . T G T ATA . G . CA AA . T . . . . G T . . A C . A TTAATTAGGAAGT T . . . T . . . . . T . C . G . G C . . . . . A
blockSeqs : . . TT . . T . . . . . . . T AAAAAAAAAA . . A A T ATA . G . CA TA . T . . . . C T . . A C . . TTAA . . . . T . . . . . T . . . G . C C . . . . . A
blockSeqs : . . TT . . T . . . . . . . . AAATAATT . . A A C ATA . G . TA TA . . . . . . G T . . A T . . TTAA . . . . T . . . . . T . . . G . A . . . . . . A
blockSeqs : . . A . . T . . . . . . . . ATTTTTTT . . . . . . . A . T T . . . . . . . . . . . . . . . . T . . . . . T . . . G . A . . . . . . A
blockSeqs : . . T . . T . . . . . . . . . T . . . . . . . . T . . . . . . . . . G . A . . . . . . G
blockSeqs : . . T . . . . . . . . . . . . . . . . . . . G . . . . . . . . A
blockSeqs : . . T . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . .
blockSeqs : . . T . . . .
blockSeqCons : T** AAAAAAAAAATTTT******** ATA* ** G* ** TTAA***************************** ****
originalCons : AGGCTTTCAAGCGGG----C-CC-T-ATTTTCCTAAT-TTTCCT-TAT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTATTTTTCCA-TGAAAATCCTAATTTTTACAAAA-AAA---AAA--------TTCGATAAG-TAAGACTTCACTTG-CTAAAAAGTCAAAAAGTAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTG--GTTGTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTGTGGTTATCAGCATNATTCAGCATGGATTT-GTGTACCATACACAACAGATCA-----TTTCTTATGGTTACTTTGAAATACTGAA-TACCCGT--GTTGA----CACTTGTATG-ATCTTCTATGATGGTAATTT-----------GTA-TAT-GGTATTTTATGTAACCTGTTGGTAAGT-ACAAATTAAATTCATTGGGGGG------------------TTA--A--AG-----TTT-ACCCCTTAT-TTT--TGCCT-GAAAATTCCTAAAATA-TCC-T-AAAAATA-GCCCT---TAT-TT-TTTTAAGA--ATT-TT--G---CC--CTAAAAAAGG-CCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
finalCons : AGGCTTTCAAGCGGG----C-CCT--ATTTTCCTAAT-TTTCCT-TAT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTATTTTTCCA-TGAAAATCCTAATTTTTACAAAAAAAAAATTTT--------TTCGATAAG-TAAGACTTCACTTG-CTAAAAAGTCAAAAAGTAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTG--GTTGTGTTG-AATCAATGTATT-TCTGTGAAGACATGCTGTGGTTATCAGCATNATTCAGCATGGATTT-GTGTACCATACACAACAGATCA-----TTTCTTATGGTTACTTTGAAATACTGAA-TACCCGT--GTTGA----CACTTGTATG-ATCTTCTATGATGGTAATTT-----------GTA-TAT-GGTATTTTATGTAACCTGTTGGTAAGT-ACAAATTAAATTCATTGGGGGGTTAA-----------------------------TTT-ACCCCTTAT-TTT--TGCCT-GAAAATTCCTAAAATA-TCC-T-AAAAATA-GCCCT---TAT-TT-TTTTAAGA--ATT-TT--G---CC--CTAAAAAAGG-CCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACTTCGTTGGGAATTACGGGTTTGCCGCTTGCTTCCGTGGCCTGAGAAACGAACACTCGAAAATCCTGCAACATACAACAGTCATATACCTAAAAATCCTCCAATATACAACACTTATAGCCTGATAAAT
Alignments
lowQualScore : 111 4444444444444444444 1 222222 1111 333333333333 1 8888888888888888888888888888888 11 11 1 1111
lowQualScore : 7777 3 111 4 4 9999 66 5 6 6 6 6 6 3 3 9999999999999999999 6 6 3 0 6 00 7 9999 0 77 77 0 5 0 33 66 5 444444 0 5 77 2222 6 2 333333333333 6 6 3 9 8 0 5 1 0000000000000000000000000000000 66 4 4 2 0 66 4 4 4 777 11 4 00 4 66 777 66 6 2 2222 4 666 55 3 77
lowQualScore : .... . ... . . .... .. . . . . . . . . ................... . . . . . .. . .... . .. .. . . . .. .. . ...... . . .. .... . . ............ . . . . . . . . ............................... .. . . . . .. . . . ... .. . .. . .. ... .. . . .... . ... .. . ..
lowQualScore : 7777 6 555 4 4 7777 11 0 7 7 7 7 7 2 2 7777777777777777777 7 7 7 1 0 99 1 9999 3 99 44 1 7 1 11 00 7 000000 1 7 99 1111 7 5 333333333333 7 7 2 3 0 8 8 0 4444444444444444444444444444444 99 4 4 0 8 77 4 4 4 888 88 4 66 4 11 888 11 2 0 5555 0 444 00 6 11
consensus : AGGCTTTCAAGCGGG----C-CC-T-ATTTTCCTAAT-TTTCCT-TAT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTATTTTTCCA-TGAAAATCCTAATTTTTACAAAAA-----AAAAA---T-TT-TTTCGATAAG-TAAGACTTCACTTG-CTAAAAAGTCAAAAAGTAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTG--GTTGTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTGTGGTTATCAGCATNATTCAGCATGGATTT-GTGTACCATACACAACAGATCA-----TTTCTTATGGTTACTTTGAAATACTGAA-TACCCGT--GTTGA----CACTTGTATG-ATCTTCTATGATGGTAATTT-----------GTA-TAT-GGTATTTTATGTAACCTGTTGGTAAGT-ACAAATTAAATTCATTGGGGGG------------------TTAA--AG-----TTTACCCCTTAT--TTT-TGCCT-GAAAATTCCTAAAATA-TCC-TAAAAA-TA-GCCCT---TAT-TTTTT-TAAGA--ATT-TT--GC---C--CTAAAAAAGG-CCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
Reference ( family-2851 ) : AGGCTTTCAAGCGGG----C-CC-T-ATTTTCCTAAT-TTTCCT-TAT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTATTTTTCCA-TGAAAATCCTAATTTTTACAAAAA-----AAAAA---T-TT-TTTCGATAAG-TAAGACTTCACTTG-CTAAAAAGTCAAAAAGTAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTG--GTTGTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTGTGGTTATCAGCATNATTCAGCATGGATTT-GTGTACCATACACAACAGATCA-----TTTCTTATGGTTACTTTGAAATACTGAA-TACCCGT--GTTGA----CACTTGTATG-ATCTTCTATGATGGTAATTT-----------GTA-TAT-GGTATTTTATGTAACCTGTTGGTAAGT-ACAAATTAAATTCATTGGGGGG------------------TTAA---------TTTACCCCTTAT--TTT-TGCCT-GAAAATTCCTAAAATA-TCC-TAAAAA-TA-GCCCT---TAT-TTTTT-TAAGA--ATT-TT--GC---C--CTAAAAAAGG-CCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
gi|1 : AGGCTTTCAAGCGGG----C-CC-TTATTTTCCTAAT-TTTCCT-TAT---TTTTG--TTCAGA-GGCCCTTATTTC-CTTTATTTAAGCTTCCAAATTCCTTAA-AAATCCCTTATTTTTCCA-TGAAATCCTTAATTTTTACAAAAA-----AAAA----------TTCGATAAG-TAAGACTTCACTTGCCTAAAAAGTCAAAAAGTA-TCAAATC-AACTTTATA-A-------TTTCAGATAGTGGAGTTGTGTTAAAATCAATGT-TA-TCT-TGAAGACATGCTGTGGTTATCAGCATAATTCAGCATGGATTTGGTGTACCATACACAACAGATTA------TTCTTTTGGTTACTTTGGAATACTGAAGTACCCGTTCG-TGA----CACTTGTATGAATCTTCTTTGATGGTAATTT-----------GTA-TAT-GGTATATT-TGTAA-CTGTTGGTAAGTAACACACTTAATTCATTGGGGGGGGGAGGGGGGGGGGGTAATTAGGAAGT----TTTACCCCTTAT--CTT-TGTCT-TACAATTCA-AAAATAGTCC-T--AAA-CA-G--CT---TAT-TTTTG-TAAGA--TTTGTT--G----C--CTAAAAAAGG-CCTC---T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
gi|10 : acAG---------TTTACCCCCTATATTTTATGCTT-GGAA-----CAAAAT---CC-TAAAAAATA-GCCCTATATAT-TTATTATAAGAC-ATT-TTTAGCACCC--CTAAAAAAGC-CCTAACCT-ACTTTCCTTC--AT-GAAAGTCATCTTG-AAAGCCg
gi|11 : tcattaagaa---------TTTACCCCTACT--TTT-TGTTT-GAAAAATCTTAAAATA-TCC-TAAAAA-TA-GCCCT---TA--TTATT-TAAGA--TTT-TA--GC---C--CTGAAAAAGGCCCT----T-ATTT---TTC--ACAAATAGTCA-CTTG-AAAGCCT
gi|12 : tttataaggaagtATTGAGAAG------------------TT------------TTACCCCTTAT--TTT-TGCTTCGAAAATTTCGAATATT-TCA-TAAAAA-TACGCCCA---TATATTTTT-TAAGAATATT-TT--GC---CCACTCTAAATCG-CTT-------TTT---TTCATATAAAAAGTCA--TTG--AAGCCgt
gi|14 : AGGCTTTCAAGTGGG----C-CT-A-ATTTTCCTTAT-TTTTTT-TATCACTTTTTTGGTCAGA-GGCCc
gi|15 : AGGCTTTCAACCAGG----CACT-T-ATTTTCCAAAT-TTTCCT-TA----TTTTT--GTACGA-GG
gi|16 : tgcGGCTTTCAAGCGGGGCAAT-CT-T-ATTTTCCTAAT-TTTCCT-TAT---TTTTT--G
gi|17 : -CCT----T-ATTT---TTC--ACAAATAGTCA-CTTG-AAATCCT
gi|18 : tAGGCTTTCAAGCGGG----C-CCTT-ATTTTCg
gi|19 : ttaacT---TTC--ACAAAAAGTCA-CTTG-AAAGCCT
gi|2 : AGGCTTTCAAGCGGG----C-CC-T-ATTTTCCTAAT-TTTCCT-TAT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTATTTTTCCA-TGAAAATCCTAATTTT-ACAAAAA-----AAAAA---T-T-----CGATAAG-TAAGACTTCACTTG-CTAATAAGTCAAAAAGCAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTG--GT-GTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTATGGTTATCAGCATT-TTGAACATGGATTT-GTGTACCATACACAACAGATCA-----TT-CTTATGGTTACCCTGAAATACTGAA-TACCCGT--ATTGA----CACTTGTATG-ATCTTCTATGATGG-AATTT-----------GTA-TAT-GGTATTTTATGTAACCTGTTGGTAAGT-ACAAATTAAATTCATTGGGGTG------------------TTAA---------TTTACCCCTTAT--TTT-TGCCT-GAAAATTCCTAAAATA-TCC-TAAAAA-TA-GCCCT---TAT-TTTTT-TAAGA--ATT-TT--GC---C--CT---AAAGG-CCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-GAAGCCTgca
gi|20 : AGGCTTTCAAGCGGG----C-CCTT-ATTTTC
gi|3 : cAGGCTTTCAAGCGGG----C-CC-T-TATTTCCTAAT-TTTCCT--AT---TTTTT--GTCAGA-GGCCCTTATTTT-CCTTATTTAAGC-TCCAAATTCC-TAA-AA-TCCCTTATTTTTCCA-TGAAAATCCTAATTT--ACAAAAA-----AAAAA---A-TT----CGATAAG-TAAGACTTCACTTG-CTAATAAGTCAAAAAGCAGTCAAATCAAACTTTATATA-GTATACTTTCAGATAGTG--GTTGTGTT-GAATCAATGTATT-TCTGTGAAGACATGCTATGGTTATCAGCATT-TTGAACATGGATTT-GTGTACCATACACAACAGATCA------TTCTTATGGTTACCTTGAAATACTGAA-TACCCGT--ATTGA----CACTTGTATG-ATCTTC-ATGATGGTAATTT-----------GTA-TATAGGTATTTTAT-TAACCTGTTGGTAAGT-ACAAATT-AATTCATTGGGGTG------------------TTAA---------TTTACCCCTTAT--TTT-TGCCT-GAAAATTCCTAAAATT-ACC-TAAAAA-TA-GCCCT---TAT-TTTTT-TAAGA--ATT-TT---C---C--CT-AAAAAGG-CCC----T-ATTT---TTC--ACAAAAAGTCA-CTTGAAAAGCC
gi|4 : AGGCTTTCAA-CGGG----C-CC-TTATTTTCCTAAT-TTTCCTATAT---TTTT---ATCAGAAGGCCCTTATTTTTCCTTATTTAAGC-TCCAAATTCC-TAA-AAATCCCTTA-TTTTCCA-TGAAAATCCTAA-TTTTACAAATA-----A---------TT-TTTC-ATAAGATAAGACTTCACTTG-CTAAAAAGTCAAAAAGTA-TCAAATCAAAC-TTATATA-GTATACTTTCAGATA-TG--ATTGTGTT---ATCAATGTATT-TCTGTGAA-ACATGCTGTGG-TATT-GCATAATTCAGCATGGATTT-GTGTACCATACATAAC--ATCA-----TTTCTTATGGTTACTTTG-AATACTGAA-TACCCGT--GTTGA----CACTTGTATG-ATTTTCTATGAT-GTAATT-------------TA-TAT-GGTATTTTATGTAACCTGTT-GTAAGT-ACAA--TAATTTCATTGGGGGG------------------TTAATTAGGAAGTTTTACCCCTTA---TTT-TGTCT-GAAAA-TCCTAAAATA-TCCTTAAAAA-TA--CCCT---TA--AATTT-TAAGA--A-T-TT--GC---C--CTAAAAAAGG-CCC----TAATTT---TTC--ACAAAAAGTCA-CTT---AAGCC
gi|5 : cATGGTGTGGTTATCAGCATAATTCAGCATGGATTT-GTGTACCATACACAACAGATCC-----TATTTTATGGTCACTTTGAAATACTAAA-TACCCGT--GTTGA----CACTTGTATG-ATCTTCTATGATCATAATTT-----------GTA-TAT-GGTATTTTATGTAATCTGTAGGCAAGT-ACAGATT-AATTCATTGGGGGG------------------TTAATTAGGAAGTTTTACCCCTTAT--TTT-TGTCT-GAAAATTCCTAAAATA-TCC-TAATAA-TA-GCCCT---TA--TTTTT-TAAGA--ATT-TT--GC---C--CTAAAAAAGGCCCT----T-ATTT---TTC--ACAAAAAGTCA-CTTG-AAAGCC
gi|6 : GGTTACTTTGAAATACTGAA-TACCCTT--GTTGA----
gi|6 : ttttttcca-TGCCT-GAAAATTCCTAAAATA-TCC-TAAAAA-T----CCC---TAT-TGTTT-TAAGA--ATT-CT--GC---C--CTAAAAAAGGCCCT----T-A-TT---TTC--ACAAAAAATCA-CTTG--AAGCCTtgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgcctgaaaattcctaaaatatcctaaaaatccctattgttttaagaattctgccctaaaaaaggcccttattttcacaaaaaatcacttgaagcctg
gi|7 : ttttttccaggttactttgaaatactgaatacccttgttgatgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGGTTTTCAAACGGG----C-CT-T-CTTCTCCTAAT-TTTCCT-TAT---TTTTT--GTCGAA-GGCCCTTATTTT-CCTTATTAAAGC-TCCAAAATCC-TAATAAAT-CCTTATTTTCTCA-TGAAAATCCTAAGTTTTAAAAAAAAATCTAAAAA---TGTTGTTTTGATAAG-CAAA---TCA--TG-CT--------GAAAAATAATCAAAT-GAAGTCTAT----GTGTACTTTTAGATAGTA--ATTGTGTT-GAATCAATGTATT-TTTATGAAG--------------TTAGCATTATTCAGCATGGAATT-GTGTACCATATATAg
gi|8 : cacAAATAGTAATTACATAAAGCCTTA-----GCATACTTTCAGATAGTG--ACTGTGTT-GAATAGATATATT-TCTGTGAAAAGATTTAGTGGTCTT---CATTATTCAGCATGAATTC-ATGTATTAT-TATAACAGAACATTTTCTTTCTTATGGTTAGACTGAAATATCGAA-TATCCAT--ATTGATGACCAGCAGTATG-ATCTTGTATGATGGTAATTCAATTAAGACCAGCAGTAT-GGCATT---TGTAA--TGATGGTAA
gi|9 : tgtAGGCTTTCAAGCGGG----C-CCTT-ATTTT-CTAATGTTTCCT-TA----TTTTT--GTCAGA-GG-CCTTATTTT-CCTTATTTAAGC-TC--AATTCT-T---AAATCCCTTATTTTTCCAGTGAAAATCCTAATTTTTAC--------------ATTTT-TT-TTTCGATAAG-TAAGACTTTACTTG-CTAAAAAGTC-AAAAGTG--CAAATCAAAC-TTATATATGAATACTTTCAGATAG-G--GTT-TGTG-AAATC-ATGTATTCTCTGTGAAGACATGCTGTGGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACTTCGTTGGGAATTACGGGTTTGCCGCTTGCTTCCGTGGCCTGAGAAACGAACACTCGAAAATCCTGCAACATACAACAGTCATATACCTAAAAATCCTCCAATATACAACACTTATAGCCTGATAAAT