lowQualScore                  :                     33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333                                                                                                                 111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                1111111111111111111111111111111111111111                                                          111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
lowQualScore                  :           4         44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444       11111    2222222222222222                                    22222222222222222222             2222        111111111111111111111111111111111111111111111111111111111111111111111     1               444444444444444444444444444444444           222222           11   222222222222           2222222     1111            2222222222                    1111111             111     33333333333                 11              0000000000000000000000000000000000000000       1111   1111                2222222  111            000000000000000000000       111   4444444444       33333333333333333333    111111           2222222     11      2222222                    111       1111  11     1     1111   11         2222         1111           2              1                  1                                      22             44  1                   1                       1                         1                                 1                                     33333                  222222                    333333333333            1             111                   11          11111       11                                         1          3          3333                              222222    11111      44444444444444444444444444444444444444444444444                                                                   66666                                                                   2                                 33333                                666666666666         333333333       1           2   4          333         
lowQualScore                  :     6     0         44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 55    11111    1111111111111111         4  99        55 2 3    66  33333333333333333333  0        2 3333  111   111111111111111111111111111111111111111111111111111111111111111111111   0 5  4 8 4   1    888888888888888888888888888888888 8 4    66 666666 5    0  5 22   555555555555  888      1111111     0000  6  1  11  5555555555   5  3 5      3 0  5555555  66  5    2 333     55555555555  1     6    3   11      444   3 1111111111111111111111111111111111111111  8 3  5555   6666           3    2222222  444 8          333333333333333333333  88   444   1111111111    8  22222222222222222222    666666 22 0  8   6666666     11      6666666    8   0    2      777       1111  22   3 0 3   4444 3 33 3       1111      7  2222     3     6      7    7  3 7   6         7  2                  3                2  77   3         11  0                   0   7       7           3           7 1   6       3          8        7             3                   7         3       33333       66   4   8 888888            3       999999999999            0             444           0       11          66666   1   55  6                    6       99        3  99  6   2          4444            77                555555    66666      66666666666666666666666666666666666666666666666                             6         0 0  8   0      5 8         22222     7                      6                                      3                        1    7   33333    0           7               888888888888      6  444444444       3 7         0   0          555         
lowQualScore                  :     .     .         ......................................................................................................................................... ..    .....    ................         .  ..        .. . .    ..  ....................  .        . ....  ...   .....................................................................   . .  . . .   .    ................................. . .    .. ...... .    .  . ..   ............  ...      .......     ....  .  .  ..  ..........   .  . .      . .  .......  ..  .    . ...     ...........  .     .    .   ..      ...   . ........................................  . .  ....   ....           .    .......  ... .          .....................  ..   ...   ..........    .  ....................    ...... .. .  .   .......     ..      .......    .   .    .      ...       ....  ..   . . .   .... . .. .       ....      .  ....     .     .      .    .  . .   .         .  .                  .                .  ..   .         ..  .                   .   .       .           .           . .   .       .          .        .             .                   .         .       .....       ..   .   . ......            .       ............            .             ...           .       ..          .....   .   ..  .                    .       ..        .  ..  .   .          ....            ..                ......    .....      ...............................................                             .         . .  .   .      . .         .....     .                      .                                      .                        .    .   .....    .           .               ............      .  .........       . .         .   .          ...         
lowQualScore                  :     0     0         11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 88    11111    0000000000000000         0  55        55 9 9    11  99999999999999999999  9        0 0000  888   666666666666666666666666666666666666666666666666666666666666666666666   8 0  4 9 4   9    999999999999999999999999999999999 9 4    11 666666 0    4  0 66   666666666666  888      7777777     8888  7  7  99  0000000000   7  8 0      5 1  4444444  99  0    2 888     88888888888  4     7    2   22      666   2 0000000000000000000000000000000000000000  0 2  0000   6666           8    0000000  000 0          888888888888888888888  88   000   6666666666    0  66666666666666666666    000000 00 6  0   0000000     00      0000000    6   8    5      555       2222  00   2 0 2   2222 2 88 2       2222      8  0000     2     7      3    3  3 3   7         3  3                  2                5  55   2         22  0                   0   3       3           3           3 0   7       3          3        3             3                   3         2       88888       88   0   8 888888            2       000000000000            0             000           8       00          77777   7   88  7                    7       22        3  22  7   0          0000            99                000000    77777      77777777777777777777777777777777777777777777777                             7         8 8  0   8      0 0         77777     3                      7                                      7                        0    3   33333    7           3               333333333333      7  333333333       3 3         0   0          000         
consensus                     : AGGTACAGCAATGTTTTAAAAACATTTTGATAACATTTATAAAAAATGCC----GG-----GAA-----G--ACATTTAATAA-AATGTTTTATTCACGTGA-TTTTGT-CATGGTC-----T----GAGA--------CA--------A-------CCCAGGT-----AGCA------CA-------ACAATGTTTT-AA--AAACGTTT--TNATAACA--TTTTGA---AAA-ATG---T--CGGGAAACATTTTAT--AAAACGTT-T-------C--------AT--------TC---A-C---GTGATTTTGTATG-TCTCAGA---------AACATTTT-T-A-AAACGTTT-T-CC----GT-AAC---TT---TGATC-----A-A-ATGT--T--TT--A-AAACGTT-TC-TTG------------AA---ACATTT-------TTTTT-A--AC-TTCTCAGAA----------ACA-TTNT-GAAAACTTTTCA-ANA--AA--CA-TTATTG---AAACGTT---TT--A-AAAATGTT-TTATTCACG-TGATTTTGTATGGT------------------------CTCAGAAA--------CA-TGTTT---AAA--CGTTTCTTGAAACATTTT-T-----TT---T-AACTTCTCAGAAAC-TT-T-T---------AAAA-CAT---TAT-ATA-C--ANATTT-TA-------CAAA---------ACAT--T---AAAAAAA-CTT-------TTCAT--AAAACA-------TTTTCGAAACATTCCATAAA---TTTTATTTAA-AA-TCATAG-GATAT--GGATA--TAATTTTAC----ATAAGANTTTCAATGACGAGTATTATTTGAAAGTAGTAT-CTTTCCAAAGGGCTTATGGAAATGTCCATTTCATCGCACAACGACGGAAATTGACCAACTGCAATAGATCACATGA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTTCTGCGGGATATT-CGCTGAATATTTCAGTTTGTCTCTTGTTTCCTC-TTCTCTGAAACAAAAACATTGAAAACAAAAATTAATTAT--AAAAAAAAAAATANAGGGT------TACACATTTTCCAAATTCAGATTAACGATCAAATCAGTTGTGAC-AAAAGCCAAGCAT---GTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTTTGGATTTACC-TTGACAT--AGTTTGTG-CC--CC-TGGTTTATTTGGAGCA--TTTCTGAGGACA--TCCAATACCTCCATTT-----TGATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AACAAGAATTGTCAAAAGGTAATGTAACTCATTGAGGATACTGATAATTGTCAACTATAGTGTACATATTGTACAAGTAAT-AAAAAATATTTAAGTGATCAACTTGCAAGAAAA-----AACATTGCACATGAATACAGACCAACAAAGGA------------ATATGACAT-C---C-A-TACATCT-ATTTTTCTTTTAATC-ACAATCACCCATAATATCTGCA
Reference ( gi|1 )            : AGGTGCAGCA-TGTTTTAAA-----CTTGAGTACAT--A-AGAGAATGCCCAACGGCATGCGAATTTACG--ACATTCAATAACAATGTTT----CACGTGAATTTTGT-CATGGT------T----GAGA--------CA--------A-------CCCAGGT-----AGCA------CA-------GCAATGTTTT-AA--AAACATTT--TGATAACA--TTTTAA---AAA-ATG---T--CGGGAAACATTTTAT--AAAATGTT-T-------T--------AT--------TC---A-C---GTGATTTTGTATGGTCTCAGA---------AACATGTT-T-A-AAACGTTT-T-CT----AT-AAC---TT---TGATC-----A-A-ATGT--T--T---A-AAACATT-TC-TTG------------AA---ACATTT-------TTTTT-A--AC-TTCTCAGAA----------ACA-TTAT-GAAAACTTTTCA-ATA--AA--CA-TTATTG---AAACATT---T---A-AAAATGTT-TTATTCACG-TGATTTTGTATGGT------------------------CTCAGAAA--------CA-TGTTT---AAA--CTTTTCTTGAAACATTTT-T-----TT---T-AACTTCTCAG--------------------AAAA-CAT---TAT-ATA-C--ACATTT-CA-------CAAA---------ACAT--T---AAAAAAA-CTT-------TTCAT--AAAACA-------TTTTTGAAACATTCCATAAA---TTTTATTTAA-AA-CCATAG-GATAT--GGATA--TAATTTTAC----ATAAGATTTTCAATGACGAGTATT-TTTGAAAGTAGTAT-CTTTCCAAAGGGCTTATGAAAATGTCCATTTCATCGCACAACGACAGAAATTGACCA--TGCAATAGATCAC--GA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTTTTGCGGGATATT-CGCTGAATATATCAGTTTGTCTCTTGTTTCCTC-TTCTCTGAAACAAAAACATTGAAAACAAAAATTAATTATAAAAAAAAAAAAATAAAGGCT------TACACATTTTCCAAATTCAGATTAACGATCAAATCAGTTGTGAC-AAAAGCCAAGCAT---GTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTTTGGATTTACC-TTGACAT--AGTTTGTG-CC--CC-TGG-TTATTTGGAG-A--TTTCTGAGGACA--TCCAATACCTCCATTT-----AGATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AACAAGAAT--TC-AAAGGTAATGTAACTCATTGAGGATACTGATAATTGTCAACTATAGTGTACATATTGTACAAGTAATAAAAAAATATTTAAGTGATCAACTTACAAGAAAA-----AACACTGCACATGAATACAGACCAACAAAGGA------------ATATGACAT-C---C-A-TACATCT-ATTTTTTTTTT-ATCAACAATCACCC---ATATCTGCAACGC
gi|2                          : AGGTACAGCAATGTTTTAAAAACATTTTGATAACATTTA-AAA-AATGTC----GG-----GAA--------ACATTTA-TAA-AATGTTTTATTCACGTGA-TTTTGTGTATGGT------CCTCAGAAA--------CATGTTTAAAA-------C----GTTTCTCAATA------CATTTGATCACAATGTTTT-AA--AAACATTTCTTGA-AACA--TTTTTTTTTAAC-TTC---T--CAGAAAACATT--ATG-AAAACTTT-T-------C--------AT--------AA---AAC---ATTATT-------------GA---------AACATTTTAT-A-AAATGTTT-T-ATTCACGT-GAT---TTGTATGGTCTCAGAA-ACATGT--T--T---A-AAACGTT-TC-TTG------------AA---ACATTT-------TTTTT-A--AC-TTCTCAGAA----------ACA-TTAT-GAAAACTTTTCATAAA--AA--CA-TTATTG---AAACATTC--T---ATAAAATGTT-TTATTCACA-TGATTT-GTATGGT------------------------CTCAGAAAAA------CA-TGTTT---AAAACCGTTTCTTGAAACATTTT-T-----TT---T-AACTTCTCAG--------------------AAA--CAT---TAT-ATAAC--ACATTT-CA-------CAAA---------ACAT--T---AAAAAAAACTT-------TTCAT--AAAACA-------TTTT-GAAACATTCCATAAA---TTTTATTTAA-AA-CCATAG-GATAT--GGATA--TAATTTTAC----ATAAGAATTTCA-TGACGAGTATTATTTGAAAGTAGTAT-C-TTCCAAAGGGCTTATGAAAATGTCCATTTCATCGCACAACGACAAAAATTGACCA--TGCAATAGATCAC--GA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTC-TTTGCGGGATATT-CGCTGAATATATCAGTTTGTCTCTTGTTCCCTCTTTCTCTGAAACAAAAACATTGAAAACAAAAATTAATTAT--AAAAAAAAAAATAAAGGCT------TACACATTTTCCAAATTCAGATTAACGATCAAATCAGTTGTGAC-AAAAGCCAAGCAT---GATATTGCTTTAAAAATCT--TATTGATGTTTTAACTTAAGTT--CA-ATTGAAGGTTTGGATTTACC--TGACAT--AGTTTGTG-CC--CCATGGTTTATTTGGAGCA--TTTCTGAGGACA--TCCAATACCTCCATTTAGATAAGATG-----TTTTTG-----AT--GATA-----------AG-G-TTTT--------------TGAAAG-CTTTCGA--TGCTGCTTTAAGGTTTTCTTGAA-G-AT-TCC---ATGTGT-AA
gi|3                          :     cCAGCAATGTTTTAAAAACATTTTGATAACAT--ATAAAAAATGCC----GG-----GAA-----A--ACA---------AATGTTTTATTCGCGTGA-TTTTGT--ATGATC-----T----CAGA---------A--------A-------CT---GT-----TTTA------AA-------ACG-TTTCTC-AA--AAA---TT--TGATCACAAGTTTTAA---AAACATT---T--CTTGAAACATTTT----------TT-T-------T------------------------------TAACTT--------CTCAGA---------AACAT-TA-T-A-TAACA-TT-T-CA----AA-AACA--TTA--TGA-A-----A-A-AT-T--T--T---ATAAACA---TA-TTG------------AA---ACATT-----------------------TCGAGA----------ACA-ATTT-GAAAA-TATTCA-TAA--AA--CA-TTTTTG----AACATTCCAT---A-AA----TT-TTATTtcgagtactgt
gi|4                          :                                                   acccaggtagcaAATTCGCGGAACATTTTATAAAAATGTTTTATTCACGTGA-TTTTGT--ATGGTC-----T----GAGAAACATGTTTA--------AAACGTTTCTCAA-T-----AACATTTGATCA--------CAATGTTTT-AA--AAACATTT--aaaatcataggtatgatataattttacataaaatttcaatgacggtattatttgaagtagatactttcaaatgcttatggaaatgtccatttcatcgcacaacgacggaaattgaccaattgcaatagatcacatgatcaaaatattaatctcctgagctttctgaatttagcatgtctcagtctaattcttctgcgggatattcgctgaatacttcagtttgtctattgtttccaattctctgaaacaaaaacattgaaaacaaattaattataaaaaaataaaggattacgtatacacattttccaaattcagattaacgattaaatcagttgtgacaaaagccaaacatgttattgctttaaaaatcttattgatgttttaagttcaattgaaggtttggatttaccttgacatagtttgtgccccctggtttatttggagcatttctgaggacatccaaaacccccattttgatgtctttgaatgctaagttttttttggaagcctttcgagctgctgctgtaaaattagttgaatgtattcttcaatgcgtaacaagaattgtcaaaaggtaatgtaactcattgaggatactgataattgtcaactatagtgtacatagtgtacaagtaataaaaaaatatttaagtgatcaacttgcaagaaaaaaaacaacattgcacatgaatacaaaccaacaaaggaatacaaggccgtatatgaatcctattacatctaatgtcttttatcacaatcacccataatatctgcacg
gi|2                          :                        cgacccagggagcacagcaatgttttaaaaaacattttgataacatttaaaaTTCAATAA---TGTTT----TATGAAAAGTTT-T-CATAATGTTTTCT----GAGA-----------------------------AGTT-----AAAA------AA-------A-AATGTTTC-AAG-AAATGTTT--TTAAAACA--TTGTGAT--CAA-ATG---TATTGAGAAACGTTTTA---AACATGTT-T-------CTGAGGACCATACACAAAATC---A-C---GTGA------ATA-------A---------AACAT-TT-T-ATAAATGTTT-C-CC----GA-CAT---TT---T--TT-----A-A-ATGT--TATC---A-AAATGTT-T--TTA------------AA---ACATTctttaaaacatttttttaacttctcagaaacttatatacacattatgaaaacttttcataaacattattgaaacgttttagaaaatgttttattcacgttgatttttatggtctcagaacatgtttaaacgtttcttgaaacttttttaacttctcagaaacattataaacatttcacaaaacattctaagaaaacttttcataaaacattttgaaaacattccataaattttatttaaatcatggatacggaatattttacataagaatttcaatgacgagtattattgaaagtcgtatctttccaaagggctttgaaatgtccatttcatcgcacgacagaaattgacatgcatgggtcacatgattcaaaatatcaatctcctgcagcttctgaattagcatgtctccagtccgattcttctgcggatattccgctgaatatttcagtttgctcttgtttcctcttctctgaaaccaaatcatgaaacaaaaatttattaaaaaaaatatatagggttacacattttccaattcagatcagttgtgacaaaaagccaagcatgttattgctttaaaatcttatattggtgttttagttccatatagaaagtttggatttaccttacatagtttatgccccctggtttgtttggagcatttctgaggacatccaatacctccattttgttggagcatttctgaggacatccaatacctccattttgatgtttttaatgataaggtttttggtagcctttcgagctgctgcgtaaaattagttgaatgtatctcttaaattcttcaaaaagaa
gi|5                          :                                                                                                      caggtacagcATAGT------T----AA----------TA--------A-------CCCCGGC-----AGCA------CA-------ACAACGTTGT-TA--AAACGTTA--TTATAACG--TTGTGA---AAA--TG---TT-CAGAAAACATTTTCT--ATAACGTT------------------AT--------T----A-CAAAGTTAATTTGTATGTTTTTTAACGTTATTATAACGTTTT-CGA-AAACGTTT-TACT----AT-AATG--TT---TTA-C-----A-A-ACGT--T--TTCAA-AAACGCTATC-ATG------------AACGTAAATTTGTGTGGTTTTTT-A--ACGTTATTATAA-----------CG-TTTTCGAAAACGTTTTA-CTAT-AA--TG-TTTTAG---AAACGTT---TTC-A-AAAACGTTATCAT-AACG-TAAATTTGTATTTT------------------------TTT--TAA--------CGTTATTA---AAA--CGTTTTTGAAAACGTTTTAC-----TT---T-AATGTTTTAGAAACGTTTTCT---------AAAA-CGT---TAT-A-A-CGTAAATTTGTATGGTTTTTAAA---------ACGT--T---ATCACAA-CAT-------TT-ATGAAAAACATGTTACGTTTTCAAAACATT--ATAAAAACTTTTTTTCAACAATTCAAAGAAATATAAAAATAACTAATTCTATAACAATAAAACCTT---TAACGAATATacattttataaaatgttttattcacgtgatttgtatggtctcagaaacatgtttaaaacgtttcttgaaacattttttttaacttctcagaaacattatgaaaacttttcataaaaacattattgaaacattctataaaatgttttattcacatgatttgtatggtctcagaaaaacatgtttaaaaccgtttcttgaaacattttttttaacttctcagaaacattatataacacatttcacaaaacattaaaaaaaacttttcataaaacattttgaaacattccataaattttatttaaaaccataggatatggatataattttacataagaatttcatgacgagtattatttgaaagtagtatcttccaaagggcttatgaaaatgtccatttcatcgcacaacgacaaaaattgaccatgcaatagatcacgatcaaaatattaatctcctgagctttctgaatttagcatgtctcagtctaattctttgcgggatattcgctgaatatatcagtttgtctcttgttccctctttctctgaaacaaaaacattgaaaacaaaaattaattataaaaaaaaaaataaaggcttacacattttccaaattcagattaacgatcaaatcagttgtgacaaaagccaagcatgatattgctttaaaaatcttattgatgttttaacttaagttcaattgaaggtttggatttacctgacatagtttgtgccccatggtttatttggagcatttctgaggacatccaatacctccatttagataagatgtttttgatgataaggtttttgaaagctttcgatgctgctttaaggttttcttgaagattccatgtgtaatcgagtactgt
gi|4                          :                                                                                                                                    --------CG--------A-------CCCAGGG-----AGCA------CA-------GCAATGTTTTAAA--AAACATTT--TGATAACA---TTTAA---AAA-AT----T--CGCGGAACATTTTATA-AAAATGTT-T-------T--------AT--------TC---A-C---GTGATTTTGTATGGTCTGAGA---------AACATGTT-T-A-AAACGTTTCT-CA----AT-AACA--TT---TGATC-----ACA-ATGT--T--TTA-A-AAACATT-TCTTTA------------AA---ACA-TT-------TTTTT-A--AC-TTCTCAGAAACTTATATACACA-TTAT-GAAAACTTTTC--ATA--AA--CA-TTATTG---AAACGTT---TTA-G-AAAATGTT-TTATTCACGTTGATTTT-TATGGT------------------------CTCAG-AA--------CA-TGTTT---AAA--CGTTTCTTGAAAC---TT-T-----TT---T-AACTTCTCAG---------------------AAA-CAT---TAT-A-A----ACATTT-CA-------CAAA---------ACATTCT---AAGAAAA-CTT-------TTCAT--AAAACA-------TTTTGAAAACATTCCATAAA---TTTTATTT-A-AA-TCAT-G-GATAC--GGA-A--T-ATTTTAC----ATAAGAATTTCAATGACGAGTATT-ATTGAAAGTCGTAT-CTTTCCAAAGGGCTT-TG-AAATGTCCATTTCATCGC---ACGACAGAAATTGA-CA--TGC-ATGGGTCACATGATTCAAAATATCAATCTCCTGCAGC-TTCTGAA-TTAGCATGTCTCCAGTCCGATTCTTCTGC-GGATATTCCGCTGAATATTTCAGTTTG-CTCTTGTTTCCTC-TTCTCTGAAACCAAATCAT--GAAACAAAAATTTATT-----AAAAAAAATATATAGGGT------TACACATTTTCC-AATTCAG------------ATCAGTTGTGACAAAAAGCCAAGCAT---GTTATTGCTTT-AAAATCTTATATTGGTGTT-----TTAGTTC--CATATAGAAAGTTTGGATTTACC-TT-ACAT--AGTTTATGCCC--CC-TGGTTTGTTTGGAGCA--TTTCTGAGGACA--TCCAATACCTCCATTT-----TGTTGGAGCATTTCTGAGGACATCCAATACCTCCATTTTGAT-GTTTTTAATGATAAGGTTTTTGGTAGCCTTTCGAGCTGCTGC-GTAAAA-TTAGTTGAATGTATCTCTTAAATTCTTCAAAAAGAAcctcat
gi|3                          :                                                                                                                                              --------A-------CCCAGGT-----AGCA------CA-------GCAATGTTTT-AA--AAACATTT--TGATAACA--TAT-AA---AAA-ATG---C--CGGGAAA------AC--AAA-TGTT-T-------T--------AT--------TC---G-C---GTGATTTTGTATGATCTCAGA---------AAC-TGTT-TTA-AAACGTTT-C-TC----AA-AAA---TT---TGATC-----A-C-AAGT--T--TTA-A-AAACATT-TC-TTG------------AA---ACATTT-------TTTTTTA--AC-TTCTCAGAA----------ACA-TTAT--ATAACATTTCA-A-A--AA--CA-TTAT-G---AAAAATT---TTATA-AACATATT-GAA---AC----ATTTCG---------------------------------AGAAC--------AA-T-TTG---AAA--ATATTCATAAAACATTTT-TGAACATTCCAT-AAATTTTATT--------------------AAAATCATAGGTATGATA-T--A-ATTT-TA-------CATA---------AAAT--T---
gi|9                          :                                                                                                                                              --------A-------CCAAGGT-----AGCA------GA-------GAAATATTTT-AA--AATCAGGT--CAACAACA--TTT--A---AAC-GTT---T--TAAGAAAAATAATATGCAAAGCGTT-T-------C--------AT--------TCTGAA-C---ATAATTTT-TATAGTCTCAAA---------AATAATTT-T-A-AAACATTTCT-TC----ATAAAG---TT---TTCTC-----AGA-ATGT--T--TTC-A-AAATGTT-T--TAGCAAACACAATATAA---ACATTT-------AATTT-AATAT-TTTTC-CAA----------ACATTTCT-GAAA------CA-ATATCAAATCATTTATTGC--AAACA-----G---A-AAAATtcaatgacggtattatttgaagtagatactttcaaatgcttatggaaatgtccatttcatcgcacaacgacggaaattgaccaattgcaatagatcacatgatcaaaatattaatctcctgagctttctgaatttagcatgtctcagtctaattcttctgcgggatattcgctgaatacttcagtttgtctattgtttccaattctctgaaacaaaaacattgaaaacaaattaattataaaaaaataaaggattacgtatacacattttccaaattcagattaacgattaaatcagttgtgacaaaagccaaacatgttattgctttaaaaatcttattgatgttttaagttcaattgaaggtttggatttaccttgacatagtttgtgccccctggtttatttggagcatttctgaggacatccaaaacccccattttgatgtctttgaatgctaagttttttttggaagcctttcgagctgctgctgtaaaattagttgaatgtattcttcaatgcgtaacaagaattgtcaaaaggtaatgtaactcattgaggatactgataattgtcaactatagtgtacatagtgtacaagtaataaaaaaatatttaagtgatcaacttgcaagaaaaaaaacaacattgcacatgaatacaaaccaacaaaggaatacaaggccgtatatgaatcctattacatctaatgtcttttatcacaatcacccataatatctgcacg
gi|12                         :                                                                                                                                                       -------CCCAGGT-----AGCA------CA-------ACAGCGTTGT-TA--AAACGTTA--TTATAACG--TTGT-G---GAA-ATGT--T--CAGAAAACATTTTCT--ATGACGTTAT-------T--------A----------CA--A-C---GTTAATTTGTAT--TTT-----------------TTTT-T-A-AAA-GTTA-T--T----AT-AACGTTTT---TGA-------A-A-ACGT--T--T---
gi|4                          :                                                                                                                                                                                              cAATGTTTT-AAAGAAATGTTT--TTAAAACA--TTGTGAT--CAA-ATGTTAT--TGAGAAACGTTTTA---AACATGTT-TCTCAGACC--------ATACAAAA--TC---A-C---GTGA------AT-------AA---------AACATTTT-T-A-TAAAATGT-T-CC----GCGAAT---TT---T--TT-----A-A-ATGTTAT--C---A-AAATGTT-TT-TTA------------AA---ACATTta
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                    cgacccagggagcacagcTTTTAAAA----------ACA-TTTT-GATAACAT-----ATA--AA--AA-ATGCCGGGAAAACA-------------AATGTT-TTATTCGCG-TGATTTTGTATGATCTCAGAAACTGTTTTAAAACGTTTCTCAAAAATTTGATCACA-AGTTTTAAAAA--CATTTCTTGAAACATTTT-T-----TT---TTAACTTCTCAGAAACATTATATAACATTTCAAAAA-CAT---TAT-G-A-A--AAATTT-TA-------TAAACATATTGAAACAT--TTCGAGAACAA-TTTGAAAATATTCAT--AAAACA-------TTTTTGAA-CATTCCATAAA---TTTTATT-AA-AA-TCATAG-G-TAT--G-ATA--TAATTTTAC----ATAAAATTT-CAATGACG-GTATTATTTGAA-GTAG-ATACTTTC--AAATGCTTATGGAAATGTCCATTTCATCGCACAACGACGGAAATTGACCAATTGCAATAGATCACATGA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTTCTGCGGGATATT-CGCTGAATACTTCAGTTTGTCTATTGTTTCCAA-TTCTCTGAAACAAAAACATTGAAAACAAA--TTAATTAT------AAAAAAATAAAGGATTACGTATACACATTTTCCAAATTCAGATTAACGATTAAATCAGTTGTGAC-AAAAGCCAAACAT---GTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTTTGGATTTACC-TTGACAT--AGTTTGTGCCC--CC-TGGTTTATTTGGAGCA--TTTCTGAGGACA--TCCAAAACCCCCATTT-----TGATG-----TCTTTGA----AT--GCTA-----------AGTTTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AACAAGAATTGTCAAAAGGTAATGTAACTCATTGAGGATACTGATAATTGTCAACTATAGTGTACATAGTGTACAAGTAATAAAAAAATATTTAAGTGATCAACTTGCAAGAAAAAAAACAACATTGCACATGAATACAAACCAACAAAGGAATACAAGGCCGTATATGA-AT-C---CTATTACATCT-A-ATGTCTTTT-ATC-ACAATCACCCATAATATCTGCAtttttaacttctcagaaacttatatacacattatgaaaacttttcataaacattattgaaacgttttagaaaatgttttattcacgttgatttttatggtctcagaacatgtttaaacgtttcttgaaacttttttaacttctcagaaacattataaacatttcacaaaacattctaagaaaacttttcataaaacattttgaaaacattccataaattttatttaaatcatggatacggaatattttacataagaatttcaatgacgagtattattgaaagtcgtatctttccaaagggctttgaaatgtccatttcatcgcacgacagaaattgacatgcatgggtcacatgattcaaaatatcaatctcctgcagcttctgaattagcatgtctccagtccgattcttctgcggatattccgctgaatatttcagtttgctcttgtttcctcttctctgaaaccaaatcatgaaacaaaaatttattaaaaaaaatatatagggttacacattttccaattcagatcagttgtgacaaaaagccaagcatgttattgctttaaaatcttatattggtgttttagttccatatagaaagtttggatttaccttacatagtttatgccccctggtttgtttggagcatttctgaggacatccaatacctccattttgttggagcatttctgaggacatccaatacctccattttgatgtttttaatgataaggtttttggtagcctttcgagctgctgcgtaaaattagttgaatgtatctcttaaattcttcaaaaagaa
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          acccaggtagcacagcaatgAT-GAAAACTTTTCA-TAA--AA--CA-TTATTG---AAACGTT---T---cg
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAAA-CTT-------TTCAT--AAAACA-------TTATTGAAACGTTt
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    atgATTTCATCGCACAACGACGGAAATTGACCAACTGCAACATATCACATGA-TCAAAATATTAATCTCCTG-AGCtt
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AAAAATTAATTATAAAAAAAATA---TATAGGGT------TACACATTTTCCAAATTCAGAT------------CAGTTGTGAC-AAAAGCCAAGCAT---GTTATTGCTTTAAAAATCT--TATTGGTGTT-----TTAAGTTC-CA-ATAGAAAGTTTGGATTTACC-TTGACAT--AGTTTATG-CC--CC-
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CAAGCATCGTGTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTT-GGATTTACC-TTGACAT--AGTTTGTG--C--CC-TGGTTTATTTGGAGCA--TTTCTGAGGACA--CCCAATACCTCCA-TT-----AGATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGC-T-AACAAGAATTGTC-AAAGG-AATGTAACTCATTGAGGATACT-ATAATTGTCAACTATAGTGTACATATTGTACAAGTAAT--AAAAATATTTAAGTGATCAACTTACAAG-AAA-----AACACTGCACATGAATACAGACCAACAAAGGA------------ATATGACAT-C---C-A-TACATCTAATTTTTTTTTTAATC-ACAATCACCC---ATATCTGCAct
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTGACTTT-----TTA-GTTTCCA-ATTGAAG-TTTG-ATTTACCGTTGA-ATTGAGTTTTTT-CCTCCC-TGT-TTATTTGGAA-ACATTTCTGAGGACA--TCCAcg
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ttTGAGGACA--TCCAATACCTCCATTT-----TGATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGTAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGT
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GACAATCCCTATACCTCAATTT-----TGATG-----TCTTT--------------------------------TT--------------TGGAAGCCTTGCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AACAAGAATTGTCAAAAGGTAATGTAACTCATTCAGGATACCGATAATTGTCAACTATAGTGTACATATTGTACAAGTAAT-AACAAATATTTAAGTGATCAACTTGCAAGAAAA-----AACATTGCACATAAAT--AGACCAACAGAGGA------------ATATGACATACATAC-A-TACATCT-ATTTTT

Unaligned ( gi|7 ): CTCACGTTTTCGGAAAGGCCTAAAACGTTTTACAATAATTTTCTAAAACATTATTATAACGTAAATTTGTATGATGGCTTTTAAAAGGTTATAACAACATTTATGAAAAACATGTTACATTTTCAAAACATTTTAAAAAACGATTTTACAATTCAAAGAAATATTTAAATAACAATAAAATCTTTAATGAATATCCTCAAAGCTTGTCATGGATATTACTTATCAACTGTCCATCAAAACACAAGTGCTTGTTGAAAATGAAAATTGTAATCATCGA
Unaligned ( gi|10 ): CGTATATTTGTATGGTTTTTTAACGTTATTATAACATAACGTTTTTGAAAATGTTTTACTATTATGTTTTTGAAACATTGTCTAAAACGTTAATATAACGTAATGTATTATTTTTAAAACGTTGTCACAACATTTTGAAACTGTGAAAACGTTTTGTAAAAAACGTT
Unaligned ( gi|16 ): GTTATTACAACGTTAATTTGTATGTTTTTTTTAACGTTATCATAACTTTTTTGAAAACGTTTTAC
Unaligned ( gi|17 ): TCATAATGCAAATTTGTGGTTTTTTTAACGTTATTACAACATTTATGAA

lowQualScore                  :                                                    11111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             11111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
lowQualScore                  :            1         22222           55555         00000000000000000000       1   1       111        1      33      22222     222222222        11111      1111111             11111                       222222     11                 22         11   22222   111            444444444444444444444                    444444444444444444444444444444444         11                   111      2222222                    2222222222   1111              111                    2222                  3333333333       4444444444444444             444444444        111   11                                      11111111111111111111       222222          2222222   333333333     222           2222222     11       2222222   1               111                          11     11         1111                                    1                                                            22             11                                              1                         1                                   1                                         11               222222                      1111111111                          111                               11111       11                                         1                                                      111111    11111      11111        22222222222         33333333333333                                                                                                                                            22                                22222                                555555555555         1 1111111       1           2   1          333         
lowQualScore                  :            5         77777     77    22222         99999999999999999999       5   3       000        3      11      66666  0  888888888  222   44444      8888888  77         44444    5    999 1 2       555555   7 00 777         1   11    5    11   77777 6 111  5     2   444444444444444444444       666    1   6 444444444444444444444444444444444     6   55    8    8    999  444   0  6666666    3   8  1   1    9999999999   2222 5            555 5      0       3   1111        8    0    5555555555 8     0000000000000000     8    3  000000000   8    444   11             3    8    8              44444444444444444444       000000 8    8   6666666   222222222     555    0  8   6666666     11       6666666   1   0           444       44 8  8    0 8 0   11 3 0 11 0       7777    3 1     5     0     66     3    0  3   3 2         3 2                   0                   88   0         11  8                   8   3       3           0             6   2       0          4        3               0                 3      0     0      6   11      0  1   3 333333            0       0 2222222222            8             111                   99          44444   0   33  5                    5       77        1  77  5              6              66                999999    44444      33333  77    77777777777  5 1    33333333333333                             5              6          2 6  6       0   3    2                       2                                      33                            3   55555                3               111111111111      2  0 8888888       0 3    0    3   3          777         
lowQualScore                  :            .         .....     ..    .....         ....................       .   .       ...        .      ..      .....  .  .........  ...   .....      .......  ..         .....    .    ... . .       ......   . .. ...         .   ..    .    ..   ..... . ...  .     .   .....................       ...    .   . .................................     .   ..    .    .    ...  ...   .  .......    .   .  .   .    ..........   .... .            ... .      .       .   ....        .    .    .......... .     ................     .    .  .........   .    ...   ..             .    .    .              ....................       ...... .    .   .......   .........     ...    .  .   .......     ..       .......   .   .           ...       .. .  .    . . .   .. . . .. .       ....    . .     .     .     ..     .    .  .   . .         . .                   .                   ..   .         ..  .                   .   .       .           .             .   .       .          .        .               .                 .      .     .      .   ..      .  .   . ......            .       . ..........            .             ...                   ..          .....   .   ..  .                    .       ..        .  ..  .              .              ..                ......    .....      .....  ..    ...........  . .    ..............                             .              .          . .  .       .   .    .                       .                                      ..                            .   .....                .               ............      .  . .......       . .    .    .   .          ...         
lowQualScore                  :            5         00000     00    55555         55555555555555555555       5   3       333        3      77      00000  7  000000000  777   33333      6666666  99         33333    7    777 0 3       444444   3 00 999         7   44    7    00   55555 7 777  2     5   888888888888888888888       888    0   7 555555555555555555555555555555555     7   88    0    0    222  000   8  0000000    8   0  0   0    2222222222   7777 7            333 7      6       7   6666        0    8    0000000000 0     8888888888888888     0    2  888888888   0    000   00             8    0    0              44444444444444444444       888888 8    0   0000000   000000000     000    6  0   0000000     00       0000000   4   8           000       66 0  0    8 0 8   00 2 8 00 8       0000    2 0     6     8     55     2    0  2   2 5         2 5                   8                   66   8         22  0                   0   2       2           0             5   5       0          0        2               0                 2      8     8      0   00      8  0   2 000000            8       8 4444444444            0             777                   22          33333   1   66  7                    7       99        4  99  7              7              99                666666    33333      66666  99    11111111111  7 4    66666666666666                             7              7          5 7  7       8   2    5                       5                                      22                            2   00000                2               222222222222      5  0 5555555       0 2    7    7   3          777         
consensus                     :  AGGTGCAGCAATGTTTTAAAAACATCTTGANNACATTTA-AGAGAATGCCCAACGGCATGCGAATTTACGACATTCAATAA-AATGTTTTACTCACGTGA-TTTTGTG-CATGGTCC---GAAACA--------ACCCAGGT-----AGCACA-------GC--AATGTTTTA-----AAAA-CGTTT--TNATAACGTTTTGA---AAANTG-T-CGGGAAACATTTTAT--AAAA-CGTTTCATT-C---A-C---GTNATTTTGTAT-G-TCTCAGAA----------ACATTTT-T-AAAACGTT-T-T---C-CAT-AACG--TT---TGATC----A-AACGT-TTT--AAAA-CGTT-TCTT-G-AA---ACATTT-------TTTTTAAC-TTCTCAGAAAC----------ATT---NT-GAAAACTTTTCA-ANA-AACGTTATTGAAACGTTTT-A-AAAATGTT-TTATTCACG----------T-GATTT-------TGT------ATGGT-CTCAGAAA--------CAT-GTTT---AAA--CGTTTCTTGAAACATTTT-TTTT-AACTTCTCAGAAAC-TT--------TT--AAAA-CATTATATA-C--ANATTT-CAC-------AAA---------ACATT---AAAAAAA-CTT-------TTCAT--AAAACAT-------TTTCGAAACATTCCATAAA---TTTTATTTAA-AA-TCATAG-GATAT--GGATA--TAATTTTAC----ATAAGAATTTCAATGACGAGTATTATTTGAAAGTAG-TATCTTTCCAAAGGGCTTATGGAAATGTCCATTTCATCGCACAACGACGGAAATTGACCAA-TGCAATAGATCACATGA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTTCTGCGGGATATT-CGCTGAATATNTCAGTTTGTCTCTTGTTTCCTCTT-CTCTGAAACAAAAACATTGAAAACAAAAATTAATTATAAAA--AAAAAAATAAAGGNT------TACACATTTTCCAAATTCAGATTAACGATCAAATCAGTTGTGAC-AAAAGCCAAGCAT---GTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTTTGGATTTACC-TTGACAT--AGTTTGTG-CC--CC-TGGTTTATTTGGAG-CATTTCTGAGGACA--TCCAATACCTCCATTT---T--GATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AA-CAAGAATTGTCAAAAGGTAATGTAACTCATTGAGGATACTGATAATTGTCAACTATAGTGTACATATTGTACAAGTAATAAAAAAATATTTAAGTGATCAACTTGCAAGAAAA-----AACACTGCACATGAATACAGACCAACAAAGGA------------ATATGACAT-C---C-A-TACATCT-ATTTTTTTTTT-ATC-ACAATCACCC---ATATCTGCA
Reference ( family-2818 )     :  AGGTACAGCAATGTTTTAAAAACATTTTGATAACATTTATAAAAAATGCC----GG-----GAA-----GACATTTAATAA-AATGTTTTATTCACGTGA-TTTTGT--CATGGTCT---GAGACA--------ACCCAGGT-----AGCACA-------AC--AATGTTTTA-----AAAA-CGTTT--TNATAACATTTTGA---AAAATG-T-CGGGAAACATTTTAT--AAAA-CGTTTCATT-C---A-C---GTGATTTTGTAT-G-TCTCAGAA----------ACATTTT-T-AAAACGTT-T-T---C-CGT-AAC---TT---TGATC----A-AATGT-TTT--AAAA-CGTT-TCTT-G-AA---ACATTT-------TTTTTAAC-TTCTCAGAAAC----------ATT---NT-GAAAACTTTTCA-ANA-AACATTATTGAAACGTTTT-A-AAAATGTT-TTATTCACG----------T-GATTT-------TGT------ATGGT-CTCAGAAA--------CAT-GTTT---AAA--CGTTTCTTGAAACATTTT-TTTT-AACTTCTCAGAAAC-----------TTTTAAAA-CATTATATA-C--ANATTT-TAC-------AAA---------ACATT---AAAAAAA-CTT-------TTCAT--AAAACAT-------TTTCGAAACATTCCATAAA---TTTTATTTAA-AA-TCATAG-GATAT--GGATA--TAATTTTAC----ATAAGANTTTCAATGACGAGTATTATTTGAAAGTAG-TATCTTTCCAAAGGGCTTATGGAAATGTCCATTTCATCGCACAACGACGGAAATTGACCAACTGCAATAGATCACATGA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTTCTGCGGGATATT-CGCTGAATATTTCAGTTTGTCTCTTGTTTCCTCTT-CTCTGAAACAAAAACATTGAAAACAAAAATTAATTATAAAA--AAAAAAATANAGGGT------TACACATTTTCCAAATTCAGATTAACGATCAAATCAGTTGTGAC-AAAAGCCAAGCAT---GTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTTTGGATTTACC-TTGACAT--AGTTTGTG-CC--CC-TGGTTTATTTGGAG-CATTTCTGAGGACA--TCCAATACCTCCATTT---T--GATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AA-CAAGAATTGTCAAAAGGTAATGTAACTCATTGAGGATACTGATAATTGTCAACTATAGTGTACATATTGTACAAGTAAT-AAAAAATATTTAAGTGATCAACTTGCAAGAAAA-----AACATTGCACATGAATACAGACCAACAAAGGA------------ATATGACAT-C---C-A-TACATCT-ATTTTTCTTTTAATC-ACAATCACCCATAATATCTGCA
gi|1                          :  AGGTGCAGCA-TGTTTTAAA-----CTTGAGTACAT--A-AGAGAATGCCCAACGGCATGCGAATTTACGACATTCAATAACAATGTTT----CACGTGAATTTTGT--CATGGT-T---GAGACA--------ACCCAGGT-----AGCACA-------GC--AATGTTTTA-----AAAA-CATTT--TGATAACATTTTAA---AAAATG-T-CGGGAAACATTTTAT--AAAA-TGTTTTATT-C---A-C---GTGATTTTGTAT-GGTCTCAGAA----------ACATGTT-T-AAAACGTT-T-T---C-TAT-AAC---TT---TGATC----A-AATGT-TT---AAAA-CATT-TCTT-G-AA---ACATTT-------TTTTTAAC-TTCTCAGAAAC----------ATT---AT-GAAAACTTTTCA-ATA-AACATTATTGAAACATTT--A-AAAATGTT-TTATTCACG----------T-GATTT-------TGT------ATGGT-CTCAGAAA--------CAT-GTTT---AAA--CTTTTCTTGAAACATTTT-TTTT-AACTTCTCAGAAA-------------------A-CATTATATA-C--ACATTT-CAC-------AAA---------ACATT---AAAAAAA-CTT-------TTCAT--AAAACAT-------TTTTGAAACATTCCATAAA---TTTTATTTAA-AA-CCATAG-GATAT--GGATA--TAATTTTAC----ATAAGATTTTCAATGACGAGTATT-TTTGAAAGTAG-TATCTTTCCAAAGGGCTTATGAAAATGTCCATTTCATCGCACAACGACAGAAATTGACCA--TGCAATAGATCAC--GA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTTTTGCGGGATATT-CGCTGAATATATCAGTTTGTCTCTTGTTTCCTCTT-CTCTGAAACAAAAACATTGAAAACAAAAATTAATTATAAAAAAAAAAAAATAAAGGCT------TACACATTTTCCAAATTCAGATTAACGATCAAATCAGTTGTGAC-AAAAGCCAAGCAT---GTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTTTGGATTTACC-TTGACAT--AGTTTGTG-CC--CC-TGG-TTATTTGGAG--ATTTCTGAGGACA--TCCAATACCTCCATTT---A--GATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AA-CAAGAAT--TC-AAAGGTAATGTAACTCATTGAGGATACTGATAATTGTCAACTATAGTGTACATATTGTACAAGTAATAAAAAAATATTTAAGTGATCAACTTACAAGAAAA-----AACACTGCACATGAATACAGACCAACAAAGGA------------ATATGACAT-C---C-A-TACATCT-ATTTTTTTTTT-ATCAACAATCACCC---ATATCTGCA
gi|10                         :                                                                                 AA-AATGTTTTACTATTATGT-TTTTGAAACATTGTCT---AAAAC--------------GTT-----AATATA-------ACGTAATGTATTATTTTTAAAA-CGTTG--TCACAACATTTTG----AAACTG-T---GAAAACGTTTTGTAAAAAA-CGTTacgc
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                cgtatatttgtatggttttttaacgttattataacataacgtttttgAAAAATTAATTATAAAA--AAAATA-TATAGGGT------TACACATTTTCCAAATTCAGAT------------CAGTTGTGAC-AAAAGCCAAGCAT---GTTATTGCTTTAAAAATCT--TATTGGTGTT-----TTAAGTTC-CA-ATAGAAAGTTTGGATTTACC-TTGACAT--AGTTTATG-CC--CC-
gi|12                         :                                                                                                                                         CCCAGGT-----AGCACA-------AC--AGCGTTGTT-----AAAA-CGTTA--TTATAACGTTGTG----GAAATGTT-CAGAAAACATTTTCT--ATGA-CGTT--ATTACA--A-C---GTTAATTTGTAT---TTT------------------TTTT-T-AAAA-GTTAT-T------AT-AACGTTTT---TGA------A-AACGT-TTT--Act
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          cTTGACTTT-----TTA-GTTTCCA-ATTGAAG-TTTG-ATTTACCGTTGA-ATTGAGTTTTTT-CCTCCC-TG-TTTATTTGGAAACATTTCTGAGGACA--TCCA
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ttTGAGGACA--TCCAATACCTCCATTT---T--GATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGTAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGT
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATTTCATCGCACAACGACGGAAATTGACCAACTGCAACATATCACATGA-TCAAAATATTAATCTCCTG-AGC
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                             T-GAAAACTTTTCA-TAA-AACATTATTGAAACGTTTT-
gi|2                          : aAGGTACAGCAATGTTTTAAAAACATTTTGATAACATTTA--AAAAATGTC----GG-----GAA------ACATTTA-TAA-AATGTTTTATTCACGTGA-TTTTGTG-TATGGTCCTCAGAAACATGTTTAAAAC----GTTTCTCAATACATTTGATCAC--AATGTTTTA-----AAAA-CATTTCTTGA-AACATTTTTTTTTAACTTC-T-CAGAAAACATT--ATG-AAAA-CTTTTCATA-A---AAC---ATTATT--------------GAA----------ACATTTTAT-AAAATGTT-T-TATTCACGT-GAT---TTGTATGGTCTCAGA-AACATGTTT--AAAA-CGTT-TCTT-G-AA---ACATTT-------TTTTTAAC-TTCTCAGAAAC----------ATT---AT-GAAAACTTTTCATAAA-AACATTATTGAAACATTCT-ATAAAATGTT-TTATTCACA----------T-GATTT--------GT------ATGGT-CTCAGAAAAA------CAT-GTTT---AAAACCGTTTCTTGAAACATTTT-TTTT-AACTTCTCAGAAAC---------------------ATTATATAAC--ACATTT-CAC-------AAA---------ACATT---AAAAAAAACTT-------TTCAT--AAAACAT-------TTT-GAAACATTCCATAAA---TTTTATTTAA-AA-CCATAG-GATAT--GGATA--TAATTTTAC----ATAAGAATTTCA-TGACGAGTATTATTTGAAAGTAG-TATCTT-CCAAAGGGCTTATGAAAATGTCCATTTCATCGCACAACGACAAAAATTGACCA--TGCAATAGATCAC--GA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTT-TGCGGGATATT-CGCTGAATATATCAGTTTGTCTCTTGTTCCCTCTTTCTCTGAAACAAAAACATTGAAAACAAAAATTAATTATAAAA--AAAAAAATAAAGGCT------TACACATTTTCCAAATTCAGATTAACGATCAAATCAGTTGTGAC-AAAAGCCAAGCAT---GATATTGCTTTAAAAATCT--TATTGATGTTTTAACTTAAGTT--CA-ATTGAAGGTTTGGATTTACC--TGACAT--AGTTTGTG-CC--CCATGGTTTATTTGGAG-CATTTCTGAGGACA--TCCAATACCTCCATTTAGATAAGATG-----TTTTTG-----AT--GATA-----------AG-G-TTTT--------------TGAAAG-CTTTCGA--TGCTGCTTTAAGGTTTTCTTGAA-G-AT-TCC---ATGTGT-AATCGAGTACTGT
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                 cTTTTAAAAAC----------ATT---TT-GATAACATAT-A-AAA-AATGCCGGGAAAAC---------AAATGTT-TTATTCGCGTGATTTTGTAT-GATCTCAGAAACTGTTTTAAAACGTTTCTCAAAAATTTGATCACAA-GTTTTAAAAA--CATTTCTTGAAACATTTT-TTTTTAACTTCTCAGAAACATTATATAACATTTCAAAAACATTATG-A-A--AAATTT-TAT-------AAACATATTGAAACATTTCGAGAACAA-TTTGAAAATATTCAT--AAAACAT-------TTTTGAA-CATTCCATAAA---TTTTATT-AA-AA-TCATAG-G-TAT--G-ATA--TAATTTTAC----ATAA-AATTTCAATGACG-GTATTATTTGAA-GTAGATA-CTTTC--AAATGCTTATGGAAATGTCCATTTCATCGCACAACGACGGAAATTGACCAATTGCAATAGATCACATGA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTTCTGCGGGATATT-CGCTGAATACTTCAGTTTGTCTATTGTTTCCAATT-CTCTGAAACAAAAACATTGAAAAC--AAATTAATTAT------AAAAAAATAAAGGATTACGTATACACATTTTCCAAATTCAGATTAACGATTAAATCAGTTGTGAC-AAAAGCCAAACAT---GTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTTTGGATTTACC-TTGACAT--AGTTTGTGCCC--CC-TGGTTTATTTGGAG-CATTTCTGAGGACA--TCCAAAACCCCCATTT---T--GATG-----TCTTTGA----AT--GCTA-----------AGTTTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AA-CAAGAATTGTCAAAAGGTAATGTAACTCATTGAGGATACTGATAATTGTCAACTATAGTGTACATAGTGTACAAGTAATAAAAAAATATTTAAGTGATCAACTTGCAAGAAAAAAAACAACATTGCACATGAATACAAACCAACAAAGGAATACAAGGCCGTATATGA-AT-C---CTATTACATCT-A-ATGTCTTTT-ATC-ACAATCACCCATAATATCTGCA
gi|4                          :                                                                                                          acccaggtagcacagcaatgCG--------ACCCAGGG-----AGCACA-------GC--AATGTTTTA-----AAAAACATTT--TGATAACATTT-AA---AAAAT--T-CGCGGAACATTTTAT--AAAAATGTTTTATT-C---A-C---GTGATTTTGTAT-GGTCTGAGAA----------ACATGTT-T-AAAACGTT-TCT---C-AAT-AACA--TT---TGATC----ACAATGT-TTT--AAAAACATT-TCTTTA-AA---ACATTT-------TTTT-AAC-TTCTCAGAAACTTATATACACATT---AT-GAAAACTTTTCA--TA-AACATTATTGAAACGTTTT-AGAAAATGTT-TTATTCACG----------TTGATTT-------T-T------ATGGT-CTCAGAA---------CAT-GTTT---AAA--CGTTTCTTGAAAC---TT-TTTT-AACTTCTCAGAAAC---------------------ATTATAAA-C--A--TTT-CAC-------AAA---------ACATTCT-AAGAAAA-CTT-------TTCAT--AAAACAT-------TTTGAAAACATTCCATAAA---TTTTATTT-A-AA-TCAT-G-GATAC--GGA-A--T-ATTTTAC----ATAAGAATTTCAATGACGAGTATTA-TTGAAAGTCG-TATCTTTCCAAAGGGCTT-T-GAAATGTCCATTTCATCGC---ACGACAGAAATTGA-CA--TGC-ATGGGTCACATGATTCAAAATATCAATCTCCTGCAGC-TTCTGAA-TTAGCATGTCTCCAGTCCGATTCTTCTGC-GGATATTCCGCTGAATATTTCAGTTTG-CTCTTGTTTCCTCTT-CTCTGAAACCAAATCAT--GAAACAAAAAT---TTATTAAA--AAAAATATATAGGGT------TACACATTTTCC-AATTCAG------------ATCAGTTGTGACAAAAAGCCAAGCAT---GTTATTGCTTT-AAAATCTTATATTGGTGTT-----TTAGTTC--CATATAGAAAGTTTGGATTTACC-TT-ACAT--AGTTTATGCCC--CC-TGGTTTGTTTGGAG-CATTTCTGAGGACA--TCCAATACCTCCATTT---T--GTTGGAGCATTTCTGAGGACATCCAATACCTCCATTTTGAT-GTTTTTAATGATAAGGTTTTTGGTAGCCTTTCGAGCTGCTGC-GTAAAA-TTAGTTGAATGTATCTCTTAAATTCTTCAA-AAAGAAcg
gi|5                          :                                                                                                                             ATA--------ACCCCGGC-----AGCACA-------AC--AACGTTGTT-----AAAA-CGTTA--TTATAACGTTGTGA---AAA-TG-TTCAGAAAACATTTTCT--ATAA-CGTT--ATT-----A-CAAAGTTAATTTGTAT-G-TTTTTTAACGTTATTATAACGTTTT-CGAAAACGTT-T-TA--C-TAT-AATG--TT---TTA-C----A-AACGT-TTTCAAAAA-CGCTATCAT-G-AACGTAAATTTGTGTGGTTTTTTAACGTTATTATAA-C----------GTT---TTCGAAAACGTTTTA-CTATAATGTTTTAGAAACGTTTTCA-AAAACGTTATCAT-AACG----------T-AAATT-------TGT------ATTTT-TTTT--AA--------CGTTATTA---AAA--CGTTTTTGAAAACGTTTTACTTT-AATGTTTTAGAAACGTT--------TTCTAAAA-CGTTATA-A-CGTAAATTTGTATGGTTTTTAAA---------ACGTT---ATCACAA-CAT-------TT-ATGAAAAACATGTTACGTTTTCAAAACATT--ATAAAAACTTTTTTTCAACAATTCAAAGAAATATAAAAATAACTAATTCTATAACAATAAAACCTT---TAACGAATAT
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   atagttaCAAGCATCGTGTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTT-GGATTTACC-TTGACAT--AGTTTGTG-CC--C--TGGTTTATTTGGAG-CATTTCTGAGGACA--CCCAATACCTCCATTA------GATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGC-T-AA-CAAGAATTGTCAAAGG--AATGTAACTCATTGAGGATACT-ATAATTGTCAACTATAGTGTACATATTGTACAAGTAAT--AAAAATATTTAAGTGATCAACTTACAAG-AAA-----AACACTGCACATGAATACAGACCAACAAAGGA------------ATATGACAT-C---C-A-TACATCTAATTTTTTTTTTAATC-ACAATCACCC---ATATCTGCAcctcat
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GACAATCCCTATACCTCAATTT---T--GATG-----TCTTT--------------------------------TT--------------TGGAAGCCTTGCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AA-CAAGAATTGTCAAAAGGTAATGTAACTCATTCAGGATACCGATAATTGTCAACTATAGTGTACATATTGTACAAGTAAT-AACAAATATTTAAGTGATCAACTTGCAAGAAAA-----AACATTGCACATAAAT--AGACCAACAGAGGA------------ATATGACATACATAC-A-TACATCT-ATTTTTcg
gi|9                          :                                                                                                                                --------ACCAAGGT-----AGCAGA-------GA--AATATTTTA-----AAAT-CAGGT--CAACAACATTT--A---AACGTT-T-TAAGAAAAATAATATGCAAAG-CGTTTCATT-CTGAA-C---ATAATTTT-TATAG-TCTCAAAA----------ATAATTT-T-AAAACATT-TCT---T-CATAAAG---TT---TTCTC----AGAATGT-TTTC-AAAA-TGTT-T-TA-GCAA---ACA--------------CAA------TATAAAC----------ATTTAATT-TAATATTTTTC---CA-AACATTTCTGAAAC

Unaligned ( gi|7 ): CTCACGTTTTCGGAAAGGCCTAAAACGTTTTACAATAATTTTCTAAAACATTATTATAACGTAAATTTGTATGATGGCTTTTAAAAGGTTATAACAACATTTATGAAAAACATGTTACATTTTCAAAACATTTTAAAAAACGATTTTACAATTCAAAGAAATATTTAAATAACAATAAAATCTTTAATGAATATCCTCAAAGCTTGTCATGGATATTACTTATCAACTGTCCATCAAAACACAAGTGCTTGTTGAAAATGAAAATTGTAATCATCGA
Unaligned ( gi|16 ): GTTATTACAACGTTAATTTGTATGTTTTTTTTAACGTTATCATAACTTTTTTGAAAACGTTTTAC
Unaligned ( gi|17 ): TCATAATGCAAATTTGTGGTTTTTTTAACGTTATTACAACATTTATGAA

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 11111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
lowQualScore                  :            1         22222           11    1      33333333333333333333       1   1       111        1      22       3333     222222222        11111      11111111111         11111                       222222                       11         11   22222   111        444444444444444444444444444444444444                      22222222     11111     22222222222        111                   111      2222222                    2222222222   1111              111                    2222                  3333333333       4444444444444444             444444444        111   11                                      11111111111111111111       222222          2222222   333333333     222           2222222     11       2222222   1               111                                    11                                        1                                                            11              11                                              1                         1                                   1                                               111        222222                      1111111111                          111                               11111       11                                         1                                                      111111    11111      11111        22222222222         33333333333333                                                                                                                                            1                                 22222                                555555555555         1 1111111       1           1   1          222         
lowQualScore                  :            5         77777     22    88    5      11111111111111111111       5   3       000        3      55       5555     888888888  222   44444      99999999999         77777    5    777 1 2       555555   1 8 11   5      0   88    5    00   99999 5 000  1     555555555555555555555555555555555555    77   5 5        5 88888888     55555  5  66666666666     5  555    6    8    999  444   0  6666666    3   8  1   1    9999999999   2222 5            555 5   1  0       3   1111        8    0    5555555555 8     0000000000000000     8    3  000000000   8    444   11             3    8    8              44444444444444444444       000000 8    8   6666666   222222222     555    0  8   6666666     11       6666666   1   0           444       44 8  8    0 8 0    3 6  0   11        5       3     3     66     3    0  3   3 2         3 2                   0                   88 8  0         11  8                   8   3       3           0             6   2       0          1        3               0                 3      0     0      6         111  1   1 333333            0       0 2222222222            8             111                   99          44444   0   33  5                    5       77        1  77  5              6              66                999999    44444      33333  77    77777777777  5 1    33333333333333                             5              6          2 6  6              7 2                       2                                      5                             3   55555                3               111111111111      2  0 8888888       0 3         3   3          333         
lowQualScore                  :            .         .....     ..    ..    .      ....................       .   .       ...        .      ..       ....     .........  ...   .....      ...........         .....    .    ... . .       ......   . . ..   .      .   ..    .    ..   ..... . ...  .     ....................................    ..   . .        . ........     .....  .  ...........     .  ...    .    .    ...  ...   .  .......    .   .  .   .    ..........   .... .            ... .   .  .       .   ....        .    .    .......... .     ................     .    .  .........   .    ...   ..             .    .    .              ....................       ...... .    .   .......   .........     ...    .  .   .......     ..       .......   .   .           ...       .. .  .    . . .    . .  .   ..        .       .     .     ..     .    .  .   . .         . .                   .                   .. .  .         ..  .                   .   .       .           .             .   .       .          .        .               .                 .      .     .      .         ...  .   . ......            .       . ..........            .             ...                   ..          .....   .   ..  .                    .       ..        .  ..  .              .              ..                ......    .....      .....  ..    ...........  . .    ..............                             .              .          . .  .              . .                       .                                      .                             .   .....                .               ............      .  . .......       . .         .   .          ...         
lowQualScore                  :            5         00000     00    55    0      00000000000000000000       5   3       000        3      33       3333     000000000  777   33333      11111111111         55555    0    444 0 8       666666   0 8 44   0      4   88    0    44   33333 7 000  0     666666666666666666666666666666666666    99   7 7        7 66666666     11111  7  99999999999     7  333    7    0    222  000   8  0000000    8   0  0   0    2222222222   7777 7            333 7   4  6       7   6666        0    8    0000000000 0     8888888888888888     0    2  888888888   0    000   00             8    0    0              44444444444444444444       888888 8    0   0000000   000000000     000    6  0   0000000     00       0000000   4   8           000       66 0  0    8 0 8    2 0  8   00        0       2     2     55     2    0  2   2 5         2 5                   8                   66 0  8         22  0                   0   2       2           0             5   5       0          0        2               0                 2      8     8      0         888  4   0 000000            8       8 4444444444            0             777                   22          33333   1   66  7                    7       99        4  99  7              7              99                666666    33333      66666  99    11111111111  7 4    66666666666666                             7              7          5 7  7              0 5                       5                                      5                             2   00000                2               222222222222      5  0 5555555       0 2         3   3          333         
consensus                     :  AGGTGCAGCAATGTTTTAAAAACATCTTGANNACATTTAAGAGAATGCCCAACGGCATGCGAATTTACGACATTCAATAA-AATGTTTTACTCACGTGA-TTTTGTG-CATGGTCC---GAAACA--------ACCCAGGT-----AGCACA-------GC--AATGTTTTA-----AAAA-CGTTT--TNACAACGTTTTGA---AAANTNTCGGGA-AACATTTTAT--AAAA-CGTTTCATT-C---A-C---GTTATTTT---GT--------AT-G-TCTCAGAA----------ACAT--TTT-T-AAAACGTT-T-T---C-NATAAC--G--TT-TG--ATC----A-AACGT-TTT--AAAA-CGTT-TCTT-G-AA---ACATTT-------TTTTTAAC-TTCTCAGAAAC----------ATT---NT-GAAAACTTTTCA-ANA-AACGTTATTGAAACGTTTT-A-AAAATGTT-TTATTCACG----------T-GATTT-------TGT------ATGGT-CTCAGAAA--------CAT-GTTT---AAA--CGTTTCTTGAAACATTTT-TTTT-AACTTCTCAGAAAC-TT--------TT--AAAA-CATTATATA-C--ANATTT-CAC-------AAA---------ACATT---AAAAAAA-CTT-------TTCAT--AAAACAT-------TTTCGAAACATTCCATAAA---TTTTATTTAA-AA-TCATAG-GATATGGATATAATT--TTACATAAGAATTTCAATGACGAGTATTATTTGAAAGTAG-TATCTTTCCAAAGGGCTTATGGAAATGTCCATTTCATCGCACAACGACGGAAATTGACCAA-T-GCAATAGATCACATGA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTTCTGCGGGATATT-CGCTGAATATNTCAGTTTGTCTCTTGTTTCCTCTT-CTCTGAAACAAAAACATTGAAAACAAAAATTAATTATAAAAAAAAAAA--TAAAGGNT------TACACATTTTCCAAATTCAGATTAACGATCAAATCAGTTGTGAC-AAAAGCCAAGCAT---GTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTTTGGATTTACC-TTGACAT--AGTTTGTG-CC--CC-TGGTTTATTTGGAG-CATTTCTGAGGACA--TCCAATACCTCCATTT---T--GATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AA-CAAGAATTGTCAAAAGGTAATGTAACTCATTGAGGATACTGATAATTGTCAACTATAGTGTACATATTGTACAAGTAATAAAAAAATATTTAAGTGATCAACTTGCAAGAAAA-----AACACTGCACATGAATACAGACCAACAAAGGA------------ATATGACAT-C---C-A-TACATCT-ATTTTTTTTTT-ATC-ACAATCACCC---ATATCTGCA
Reference ( family-2818 )     :  AGGTGCAGCAATGTTTTAAAAACATCTTGANNACATTTAAGAGAATGCCCAACGGCATGCGAATTTACGACATTCAATAA-AATGTTTTACTCACGTGA-TTTTGTG-CATGGTCC---GAAACA--------ACCCAGGT-----AGCACA-------GC--AATGTTTTA-----AAAA-CGTTT--TNATAACGTTTTGA---AAANTGTCGGGA-AACATTTTAT--AAAA-CGTTTCATT-C---A-C---GTNATTTT---GT--------AT-G-TCTCAGAA----------ACAT--TTT-T-AAAACGTT-T-T---C-CATAAC--G--TT-TG--ATC----A-AACGT-TTT--AAAA-CGTT-TCTT-G-AA---ACATTT-------TTTTTAAC-TTCTCAGAAAC----------ATT---NT-GAAAACTTTTCA-ANA-AACGTTATTGAAACGTTTT-A-AAAATGTT-TTATTCACG----------T-GATTT-------TGT------ATGGT-CTCAGAAA--------CAT-GTTT---AAA--CGTTTCTTGAAACATTTT-TTTT-AACTTCTCAGAAAC-----------TTTTAAAA-CATTATATA-C--ANATTT-CAC-------AAA---------ACATT---AAAAAAA-CTT-------TTCAT--AAAACAT-------TTTCGAAACATTCCATAAA---TTTTATTTAA-AA-TCATAG-GATATGGATATAATT--TTACATAAGAATTTCAATGACGAGTATTATTTGAAAGTAG-TATCTTTCCAAAGGGCTTATGGAAATGTCCATTTCATCGCACAACGACGGAAATTGACCAA-T-GCAATAGATCACATGA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTTCTGCGGGATATT-CGCTGAATATNTCAGTTTGTCTCTTGTTTCCTCTT-CTCTGAAACAAAAACATTGAAAACAAAAATTAATTATAAAAAAAAAAA--TAAAGGNT------TACACATTTTCCAAATTCAGATTAACGATCAAATCAGTTGTGAC-AAAAGCCAAGCAT---GTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTTTGGATTTACC-TTGACAT--AGTTTGTG-CC--CC-TGGTTTATTTGGAG-CATTTCTGAGGACA--TCCAATACCTCCATTT---T--GATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AA-CAAGAATTGTCAAAAGGTAATGTAACTCATTGAGGATACTGATAATTGTCAACTATAGTGTACATATTGTACAAGTAATAAAAAAATATTTAAGTGATCAACTTGCAAGAAAA-----AACACTGCACATGAATACAGACCAACAAAGGA------------ATATGACAT-C---C-A-TACATCT-ATTTTTTTTTT-ATC-ACAATCACCC---ATATCTGCA
gi|1                          :  AGGTGCAGCA-TGTTTTAAA-----CTTGAGTACAT--AAGAGAATGCCCAACGGCATGCGAATTTACGACATTCAATAACAATGTTT----CACGTGAATTTTGT--CATGGTT----GAGACA--------ACCCAGGT-----AGCACA-------GC--AATGTTTTA-----AAAA-CATTT--TGATAACATTTTAA---AAAATGTCGGGA-AACATTTTAT--AAAA-TGTTTTATT-C---A-C---GTGATTTT---GT--------AT-GGTCTCAGAA----------ACAT--GTT-T-AAAACGTT-T-T---C-TATAAC-----TT-TG--ATC----A-AATGT-TT---AAAA-CATT-TCTT-G-AA---ACATTT-------TTTTTAAC-TTCTCAGAAAC----------ATT---AT-GAAAACTTTTCA-ATA-AACATTATTGAAACATTT--A-AAAATGTT-TTATTCACG----------T-GATTT-------TGT------ATGGT-CTCAGAAA--------CAT-GTTT---AAA--CTTTTCTTGAAACATTTT-TTTT-AACTTCTCAGAAA-------------------A-CATTATATA-C--ACATTT-CAC-------AAA---------ACATT---AAAAAAA-CTT-------TTCAT--AAAACAT-------TTTTGAAACATTCCATAAA---TTTTATTTAA-AA-CCATAG-GATATGGATATAATT--TTACATAAGATTTTCAATGACGAGTATT-TTTGAAAGTAG-TATCTTTCCAAAGGGCTTATGAAAATGTCCATTTCATCGCACAACGACAGAAATTGACCA--T-GCAATAGATCAC--GA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTTTTGCGGGATATT-CGCTGAATATATCAGTTTGTCTCTTGTTTCCTCTT-CTCTGAAACAAAAACATTGAAAACAAAAATTAATTATAAAAAAAAAAAAATAAAGGCT------TACACATTTTCCAAATTCAGATTAACGATCAAATCAGTTGTGAC-AAAAGCCAAGCAT---GTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTTTGGATTTACC-TTGACAT--AGTTTGTG-CC--CC-TGGTT-ATTTGGAG--ATTTCTGAGGACA--TCCAATACCTCCATTT---A--GATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AA-CAAGAATT--CAAA-GGTAATGTAACTCATTGAGGATACTGATAATTGTCAACTATAGTGTACATATTGTACAAGTAATAAAAAAATATTTAAGTGATCAACTTACAAGAAAA-----AACACTGCACATGAATACAGACCAACAAAGGA------------ATATGACAT-C---C-A-TACATCT-ATTTTTTTTTT-ATCAACAATCACCC---ATATCTGCA
gi|10                         :                                                                                                                                                                         TTTTAC----AAAA-CGTTT--TCACA--GTTTC-----AAAATGTTGTGACAACGTTTTA---AAAA-TAATACATT-----A-C---GTTATATTAACGTTTTAGACAAT-G-TTTCAAAA----------ACATAATAG-T-AAAACATT-T-T---C-AAAAAC--G--TTATGTTATA----ATAACGT-TAA--AAAA-Cacgc
gi|10                         :                                                                  cgtatatttgtatgAA-AATGTTTTACTATTATGT-TTTTGAAACATTGTCT---AAAAC--------------GTT-----AATATA-------ACGTAATGTATTATTTTTAAAA-CGTTG--TCACAACATTTTG----AAACTGT--GAA-AACGTTTTGTAAAAAA-CGTTaacgtt
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       cgtatatttgtatggttttttaacgttattataacataacgtttttgAAAAATTAATTATAAAAAAAATA---TATAGGGT------TACACATTTTCCAAATTCAGAT------------CAGTTGTGAC-AAAAGCCAAGCAT---GTTATTGCTTTAAAAATCT--TATTGGTGTT-----TTAAGTTC-CA-ATAGAAAGTTTGGATTTACC-TTGACAT--AGTTTATG-CC--CC-
gi|12                         :                                                                                                                                        CCCAGGT-----AGCACA-------AC--AGCGTTGTT-----AAAA-CGTTA--TTATAACGTTGTGG---AAATGTTCAGAA-AACATTTTCT--ATGA-CGTT--ATTACA--A-C---GTTAATTT---GT--------AT---TTT------------------T--TTT-T-AAAA-GTTAT-T------ATAAC--GTTTT-TG--A------A-AACGT-TTT--Act
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 cTTGACTTT-----TTA-GTTTCCA-ATTGAAG-TTTG-ATTTACCGTTGA-ATTGAGTTTTTT-CCTCCC-TG-TTTATTTGGAAACATTTCTGAGGACA--TCCA
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ttTGAGGACA--TCCAATACCTCCATTT---T--GATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGTAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGT
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATTTCATCGCACAACGACGGAAATTGACCAACT-GCAACATATCACATGA-TCAAAATATTAATCTCCTG-AGC
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                         T-GAAAACTTTTCA-TAA-AACATTATTGAAACGTTTT-
gi|2                          : aAGGTACAGCAATGTTTTAAAAACATTTTGATAACATTTAAAA-AATGTC----GG-----GAA------ACATTTA-TAA-AATGTTTTATTCACGTGA-TTTTGTG-TATGGTCCTCAGAAACATGTTTAAAAC----GTTTCTCAATACATTTGATCAC--AATGTTTTA-----AAAA-CATTTCTTGA-AACATTTTTTTTTAACTTCTCAGAA-AACATT--ATG-AAAA-CTTTTCATA-A---AAC---ATTATT-------------------------GAA----------ACAT--TTTAT-AAAATGTT-T-TATTCACGTGATTTG--TA-TG--GTCTCAGA-AACATGTTT--AAAA-CGTT-TCTT-G-AA---ACATTT-------TTTTTAAC-TTCTCAGAAAC----------ATT---AT-GAAAACTTTTCATAAA-AACATTATTGAAACATTCT-ATAAAATGTT-TTATTCACA----------T-GATTT--------GT------ATGGT-CTCAGAAAAA------CAT-GTTT---AAAACCGTTTCTTGAAACATTTT-TTTT-AACTTCTCAGAAAC---------------------ATTATATAAC--ACATTT-CAC-------AAA---------ACATT---AAAAAAAACTT-------TTCAT--AAAACAT-------TTT-GAAACATTCCATAAA---TTTTATTTAA-AA-CCATAG-GATATGGATATAATT--TTACATAAGAATTTCA-TGACGAGTATTATTTGAAAGTAG-TATCTT-CCAAAGGGCTTATGAAAATGTCCATTTCATCGCACAACGACAAAAATTGACCA--T-GCAATAGATCAC--GA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTT-TGCGGGATATT-CGCTGAATATATCAGTTTGTCTCTTGTTCCCTCTTTCTCTGAAACAAAAACATTGAAAACAAAAATTAATTATAAAAAAAAAAA--TAAAGGCT------TACACATTTTCCAAATTCAGATTAACGATCAAATCAGTTGTGAC-AAAAGCCAAGCAT---GATATTGCTTTAAAAATCT--TATTGATGTTTTAACTTAAGTT--CA-ATTGAAGGTTTGGATTTACC--TGACAT--AGTTTGTG-CC--CCATGGTTTATTTGGAG-CATTTCTGAGGACA--TCCAATACCTCCATTTAGATAAGATG-----TTTTTG-----AT--GATA-----------AG-G-TTTT--------------TGAAAG-CTTTCGA--TGCTGCTTTAAGGTTTTCTTGAA-G-AT-TCC---ATGTGT-AATCGAGTACTGT
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                             cTTTTAAAAAC----------ATT---TT-GATAACATAT-A-AAA-AATGCCGGGAAAAC---------AAATGTT-TTATTCGCGTGATTTTGTAT-GATCTCAGAAACTGTTTTAAAACGTTTCTCAAAAATTTGATCACAA-GTTTTAAAAA--CATTTCTTGAAACATTTT-TTTTTAACTTCTCAGAAACATTATATAACATTTCAAAAACATTATG-A-A--AAATTT-TAT-------AAACATATTGAAACATTTCGAGAACAA-TTTGAAAATATTCAT--AAAACAT-------TTTTGAA-CATTCCATAAA---TTTTATT-AA-AA-TCATAG-G-TATG-ATATAATT--TTACATAA-AATTTCAATGACG-GTATTATTTGAA-GTAGATA-CTTTC--AAATGCTTATGGAAATGTCCATTTCATCGCACAACGACGGAAATTGACCAA-TTGCAATAGATCACATGA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTTCTGCGGGATATT-CGCTGAATACTTCAGTTTGTCTATTGTTTCCAATT-CTCTGAAACAAAAACATTGAAAAC--AAATTAATTAT----AAAAAAA--TAAAGGATTACGTATACACATTTTCCAAATTCAGATTAACGATTAAATCAGTTGTGAC-AAAAGCCAAACAT---GTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTTTGGATTTACC-TTGACAT--AGTTTGTGCCC--CC-TGGTTTATTTGGAG-CATTTCTGAGGACA--TCCAAAACCCCCATTT---T--GATG-----TCTTTGA----AT--GCTA-----------AGTTTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AA-CAAGAATTGTCAAAAGGTAATGTAACTCATTGAGGATACTGATAATTGTCAACTATAGTGTACATAGTGTACAAGTAATAAAAAAATATTTAAGTGATCAACTTGCAAGAAAAAAAACAACATTGCACATGAATACAAACCAACAAAGGAATACAAGGCCGTATATGA-AT-C---CTATTACATCT-A-ATGTCTTTT-ATC-ACAATCACCCATAATATCTGCA
gi|4                          :                                                                                                         acccaggtagcacagcaatgCG--------ACCCAGGG-----AGCACA-------GC--AATGTTTTA-----AAAAACATTT--TGATAACATTT-AA---AAAAT-TCGCGG-AACATTTTAT--AAAAATGTTTTATT-C---A-C---GTGATTTT---GT--------AT-GGTCTGAGAA----------ACAT--GTT-T-AAAACGTT-TCT---C-AATAAC--A--TT-TG--ATC----ACAATGT-TTT--AAAAACATT-TCTTTA-AA---ACATTT-------TTTT-AAC-TTCTCAGAAACTTATATACACATT---AT-GAAAACTTTTCA--TA-AACATTATTGAAACGTTTT-AGAAAATGTT-TTATTCACG----------TTGATTT-------T-T------ATGGT-CTCAGAA---------CAT-GTTT---AAA--CGTTTCTTGAAAC---TT-TTTT-AACTTCTCAGAAAC---------------------ATTATAAA-C--A--TTT-CAC-------AAA---------ACATTCT-AAGAAAA-CTT-------TTCAT--AAAACAT-------TTTGAAAACATTCCATAAA---TTTTATTT-A-AA-TCAT-G-GATACGGA-AT-ATT--TTACATAAGAATTTCAATGACGAGTATTA-TTGAAAGTCG-TATCTTTCCAAAGGGCTT-T-GAAATGTCCATTTCATCGC---ACGACAGAAATTGAC--A-T-GC-ATGGGTCACATGATTCAAAATATCAATCTCCTGCAGC-TTCTGAA-TTAGCATGTCTCCAGTCCGATTCTTCTGC-GGATATTCCGCTGAATATTTCAGTTTG-CTCTTGTTTCCTCTT-CTCTGAAACCAAATCAT--GAAACAAAAAT---TTATTAAAAAAAATA--TATAGGGT------TACACATTTTCC-AATTCAG------------ATCAGTTGTGACAAAAAGCCAAGCAT---GTTATTGCTTT-AAAATCTTATATTGGTGTT-----TTAGTTC--CATATAGAAAGTTTGGATTTACC-TT-ACAT--AGTTTATGCCC--CC-TGGTTTGTTTGGAG-CATTTCTGAGGACA--TCCAATACCTCCATTT---T--GTTGGAGCATTTCTGAGGACATCCAATACCTCCATTTTGAT-GTTTTTAATGATAAGGTTTTTGGTAGCCTTTCGAGCTGCTGC-GTAAAA-TTAGTTGAATGTATCTCTTAAATTCTTCAA-AAAGAAcg
gi|5                          :                                                                                                                           AATA--------ACCCCGGC-----AGCACA-------AC--AACGTTGTT-----AAAA-CGTTA--TTATAACGTTGTGA---AAATGTTCAGAA-AACATTTTCT--ATAA-CGTT--ATT-----A-CAAAGTTAATTT---GT--------AT-G-TTTTTTAACGTTATTATAACGT--TTT-CGAAAACGTT-T-TA--C-TATAAT--G--TT-TT--A-C----A-AACGT-TTTCAAAAA-CGCTATCAT-G-AACGTAAATTTGTGTGGTTTTTTAACGTTATTATAA-C----------GTT---TTCGAAAACGTTTTA-CTATAATGTTTTAGAAACGTTTTCA-AAAACGTTATCAT-AACG----------T-AAATT-------TGT------ATTTT-TTTT--AA--------CGTTATTA---AAA--CGTTTTTGAAAACGTTTTACTTT-AATGTTTTAGAAACGTT--------TTCTAAAA-CGTTATA-A-CGTAAATTTGTATGGTTTTTAAA---------ACGTT---ATCACAA-CAT-------TT-ATGAAAAACATGTTACGTTTTCAAAACATT--ATAAAAACTTTTTTTCAACAATTCAAAGAAATATAAAAATAACTAATTCTATAACAAT
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           atagttCAAGCATCGTGTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTT-GGATTTACC-TTGACAT--AGTTTGTG-CC--C--TGGTTTATTTGGAG-CATTTCTGAGGACA--CCCAATACCTCCATTA------GATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGC-T-AA-CAAGAATTGTCAAAGG--AATGTAACTCATTGAGGATACT-ATAATTGTCAACTATAGTGTACATATTGTACAAGTAAT--AAAAATATTTAAGTGATCAACTTACAAG-AAA-----AACACTGCACATGAATACAGACCAACAAAGGA------------ATATGACAT-C---C-A-TACATCTAATTTTTTTTTTAATC-ACAATCACCC---ATATCTGCAaaaacctttaacgaatatcctcat
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GACAATCCCTATACCTCAATTT---T--GATG-----TCTTT--------------------------------TT--------------TGGAAGCCTTGCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AA-CAAGAATTGTCAAAAGGTAATGTAACTCATTCAGGATACCGATAATTGTCAACTATAGTGTACATATTGTACAAGTAAT-AACAAATATTTAAGTGATCAACTTGCAAGAAAA-----AACATTGCACATAAAT--AGACCAACAGAGGA------------ATATGACATACATAC-A-TACATCT-ATTTTTcg
gi|9                          :                                                                                                                               --------ACCAAGGT-----AGCAGA-------GA--AATATTTTA-----AAAT-CAGGT--CAACAACATTT--A---AACGTTTTAAGA-AAAATAATATGCAAAG-CGTTTCATT-CTGAA-C---ATAATTTT----T--------ATAG-TCTCAAAA----------ATAA--TTT-T-AAAACATT-TCT---T-CATAAA--G--TT-TT--CTC----AGAATGT-TTTC-AAAA-TGTT-T-TA-GCAA---ACA--------------CAA------TATAAAC----------ATTTAATT-TAATATTTTTC---CA-AACATTTCTGAAAC

Unaligned ( gi|7 ): CTCACGTTTTCGGAAAGGCCTAAAACGTTTTACAATAATTTTCTAAAACATTATTATAACGTAAATTTGTATGATGGCTTTTAAAAGGTTATAACAACATTTATGAAAAACATGTTACATTTTCAAAACATTTTAAAAAACGATTTTACAATTCAAAGAAATATTTAAATAACAATAAAATCTTTAATGAATATCCTCAAAGCTTGTCATGGATATTACTTATCAACTGTCCATCAAAACACAAGTGCTTGTTGAAAATGAAAATTGTAATCATCGA
Unaligned ( gi|16 ): GTTATTACAACGTTAATTTGTATGTTTTTTTTAACGTTATCATAACTTTTTTGAAAACGTTTTAC
Unaligned ( gi|17 ): TCATAATGCAAATTTGTGGTTTTTTTAACGTTATTACAACATTTATGAA

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 11111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
lowQualScore                  :            1         22222           11    1      33333333333333333333       1   1       111        1      22       3333     222222222        11111      11111111111         11111                       222222                       11         11   22222   111        55555555555555555555555555555555555                      11111         333333333333333333333        111                   111     2222222                     2222222222   1111              111                    2222                  3333333333       4444444444444444             444444444        111   11                                      11111111111111111111       222222         2222222    333333333     222           2222222     11      2222222    1               111                                    11                                        1                                                            11              11                                              1                         1                                   1                                               111        222222                      1111111111                          111                               11111       11                                         1                                                      111111    11111      11111        22222222222         33333333333333                                                                                                                                            1                                 22222                                555555555555         1 1111111       1           1   1          222         
lowQualScore                  :            5         77777     22    88    5      11111111111111111111       5   3       000        3      55       5555     888888888  222   44444      99999999999         77777    5    777 1 4       555555   1 5 11   5      0   88    5    00   99999 5 000  1     11111111111111111111111111111111111     77   5 5         22222      77 333333333333333333333     5  555    6    8    999  444   0 6666666     3   8  1   1    9999999999   2222 5            555 5   1  0       3   1111        8   0     5555555555 8     0000000000000000     8   0   000000000  8     444   11             3    8    8              44444444444444444444       000000 8    8  6666666    222222222     555    0  8   6666666     11      6666666    1   0           444       44 8  8    0 8 0    3 6  0   11        5       3     3     66     3    0  3   3 2         3 2                   0                   88 8  0         11  8                   8   3       3           0             6   2       0          1        3               0                 3      0     0      6         111  1   1 333333            0       0 2222222222            8             111                   99          44444   0   33  5                    5       77        1  77  5              6              66                999999    44444      33333  77    77777777777  5 1    33333333333333                             5              6          2 6  6              7 2                       2                                      5                             3   55555                3               111111111111      2  0 8888888       0 3         3   3          333         
lowQualScore                  :            .         .....     ..    ..    .      ....................       .   .       ...        .      ..       ....     .........  ...   .....      ...........         .....    .    ... . .       ......   . . ..   .      .   ..    .    ..   ..... . ...  .     ...................................     ..   . .         .....      .. .....................     .  ...    .    .    ...  ...   . .......     .   .  .   .    ..........   .... .            ... .   .  .       .   ....        .   .     .......... .     ................     .   .   .........  .     ...   ..             .    .    .              ....................       ...... .    .  .......    .........     ...    .  .   .......     ..      .......    .   .           ...       .. .  .    . . .    . .  .   ..        .       .     .     ..     .    .  .   . .         . .                   .                   .. .  .         ..  .                   .   .       .           .             .   .       .          .        .               .                 .      .     .      .         ...  .   . ......            .       . ..........            .             ...                   ..          .....   .   ..  .                    .       ..        .  ..  .              .              ..                ......    .....      .....  ..    ...........  . .    ..............                             .              .          . .  .              . .                       .                                      .                             .   .....                .               ............      .  . .......       . .         .   .          ...         
lowQualScore                  :            5         00000     00    55    0      00000000000000000000       5   3       000        3      33       3333     000000000  777   33333      11111111111         55555    0    444 0 2       666666   0 9 44   0      4   88    0    44   33333 7 000  6     11111111111111111111111111111111111     99   7 7         11111      99 999999999999999999999     7  333    7    0    222  000   8 0000000     8   0  0   0    2222222222   7777 7            333 7   4  6       7   6666        0   8     0000000000 0     8888888888888888     0   8   888888888  0     000   00             8    0    0              44444444444444444444       888888 8    0  0000000    000000000     000    6  0   0000000     00      0000000    4   8           000       66 0  0    8 0 8    2 0  8   00        0       2     2     55     2    0  2   2 5         2 5                   8                   66 0  8         22  0                   0   2       2           0             5   5       0          0        2               0                 2      8     8      0         888  4   0 000000            8       8 4444444444            0             777                   22          33333   1   66  7                    7       99        4  99  7              7              99                666666    33333      66666  99    11111111111  7 4    66666666666666                             7              7          5 7  7              0 5                       5                                      5                             2   00000                2               222222222222      5  0 5555555       0 2         3   3          333         
consensus                     :  AGGTGCAGCAATGTTTTAAAAACATCTTGANNACATTTAAGAGAATGCCCAACGGCATGCGAATTTACGACATTCAATAA-AATGTTTTACTCACGTGA-TTTTGTG-CATGGTCC---GAAACA--------ACCCAGGT-----AGCACA-------GC--AATGTTTTA-----AAAA-CGTTT--TNACAACGTTTTGA---AAANTNTCGGGA-AACATTTTAT--AAAA-CGTTTCATT-C---A-C---GTTATTTT---GT--------AT-G-TCTCAGA----------AACAT--TTT-T-AAAACGTTT-T-CTATAACG--T------T-TG--ATC----A-AACGT-TTT--AAAA-CGTT-TCTT-G-AA---ACATT-------TTTTTTAAC-TTCTCAGAAAC----------ATT---NT-GAAAACTTTTCA-ANA-AACGTTATTGAAACGTTTT-A-AAAATGTT-TTATTCACG----------T-GATTT-------TGT------ATGGT-CTCAGAAA--------CA-TGTTT---AAA--CGTTTCTTGAAACATTTT-TTTT-AACTTCTCAGAAAC-TT--------TT--AAAA-CATTATATA-C--ANATTT-CA-------CAAA---------ACATT---AAAAAAA-CTT-------TTCAT--AAAACA-------TTTTCGAAACATTCCATAAA---TTTTATTTAA-AA-TCATAG-GATATGGATATAATT--TTACATAAGAATTTCAATGACGAGTATTATTTGAAAGTAG-TATCTTTCCAAAGGGCTTATGGAAATGTCCATTTCATCGCACAACGACGGAAATTGACCAA-T-GCAATAGATCACATGA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTTCTGCGGGATATT-CGCTGAATATNTCAGTTTGTCTCTTGTTTCCTCTT-CTCTGAAACAAAAACATTGAAAACAAAAATTAATTATAAAAAAAAAAA--TAAAGGNT------TACACATTTTCCAAATTCAGATTAACGATCAAATCAGTTGTGAC-AAAAGCCAAGCAT---GTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTTTGGATTTACC-TTGACAT--AGTTTGTG-CC--CC-TGGTTTATTTGGAG-CATTTCTGAGGACA--TCCAATACCTCCATTT---T--GATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AA-CAAGAATTGTCAAAAGGTAATGTAACTCATTGAGGATACTGATAATTGTCAACTATAGTGTACATATTGTACAAGTAATAAAAAAATATTTAAGTGATCAACTTGCAAGAAAA-----AACACTGCACATGAATACAGACCAACAAAGGA------------ATATGACAT-C---C-A-TACATCT-ATTTTTTTTTT-ATC-ACAATCACCC---ATATCTGCA
Reference ( family-2818 )     :  AGGTGCAGCAATGTTTTAAAAACATCTTGANNACATTTAAGAGAATGCCCAACGGCATGCGAATTTACGACATTCAATAA-AATGTTTTACTCACGTGA-TTTTGTG-CATGGTCC---GAAACA--------ACCCAGGT-----AGCACA-------GC--AATGTTTTA-----AAAA-CGTTT--TNACAACGTTTTGA---AAANTNTCGGGA-AACATTTTAT--AAAA-CGTTTCATT-C---A-C---GTTATTTT---GT--------AT-G-TCTCAGA----------AACAT--TTT-T-AAAACGTTT-T-CNATAACG--T------T-TG--ATC----A-AACGT-TTT--AAAA-CGTT-TCTT-G-AA---ACATT-------TTTTTTAAC-TTCTCAGAAAC----------ATT---NT-GAAAACTTTTCA-ANA-AACGTTATTGAAACGTTTT-A-AAAATGTT-TTATTCACG----------T-GATTT-------TGT------ATGGT-CTCAGAAA--------CA-TGTTT---AAA--CGTTTCTTGAAACATTTT-TTTT-AACTTCTCAGAAAC-----------TTTTAAAA-CATTATATA-C--ANATTT-CA-------CAAA---------ACATT---AAAAAAA-CTT-------TTCAT--AAAACA-------TTTTCGAAACATTCCATAAA---TTTTATTTAA-AA-TCATAG-GATATGGATATAATT--TTACATAAGAATTTCAATGACGAGTATTATTTGAAAGTAG-TATCTTTCCAAAGGGCTTATGGAAATGTCCATTTCATCGCACAACGACGGAAATTGACCAA-T-GCAATAGATCACATGA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTTCTGCGGGATATT-CGCTGAATATNTCAGTTTGTCTCTTGTTTCCTCTT-CTCTGAAACAAAAACATTGAAAACAAAAATTAATTATAAAAAAAAAAA--TAAAGGNT------TACACATTTTCCAAATTCAGATTAACGATCAAATCAGTTGTGAC-AAAAGCCAAGCAT---GTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTTTGGATTTACC-TTGACAT--AGTTTGTG-CC--CC-TGGTTTATTTGGAG-CATTTCTGAGGACA--TCCAATACCTCCATTT---T--GATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AA-CAAGAATTGTCAAAAGGTAATGTAACTCATTGAGGATACTGATAATTGTCAACTATAGTGTACATATTGTACAAGTAATAAAAAAATATTTAAGTGATCAACTTGCAAGAAAA-----AACACTGCACATGAATACAGACCAACAAAGGA------------ATATGACAT-C---C-A-TACATCT-ATTTTTTTTTT-ATC-ACAATCACCC---ATATCTGCA
gi|1                          :  AGGTGCAGCA-TGTTTTAAA-----CTTGAGTACAT--AAGAGAATGCCCAACGGCATGCGAATTTACGACATTCAATAACAATGTTT----CACGTGAATTTTGT--CATGGTT----GAGACA--------ACCCAGGT-----AGCACA-------GC--AATGTTTTA-----AAAA-CATTT--TGATAACATTTTAA---AAAATGTCGGGA-AACATTTTAT--AAAA-TGTTTTATT-C---A-C---GTGATTTT---GT--------AT-GGTCTCAGA----------AACAT--GTT-T-AAAACGTTT-T-CTATAAC---T------T-TG--ATC----A-AATGT-TT---AAAA-CATT-TCTT-G-AA---ACATT-------TTTTTTAAC-TTCTCAGAAAC----------ATT---AT-GAAAACTTTTCA-ATA-AACATTATTGAAACATTT--A-AAAATGTT-TTATTCACG----------T-GATTT-------TGT------ATGGT-CTCAGAAA--------CA-TGTTT---AAA--CTTTTCTTGAAACATTTT-TTTT-AACTTCTCAGAAA-------------------A-CATTATATA-C--ACATTT-CA-------CAAA---------ACATT---AAAAAAA-CTT-------TTCAT--AAAACA-------TTTTTGAAACATTCCATAAA---TTTTATTTAA-AA-CCATAG-GATATGGATATAATT--TTACATAAGATTTTCAATGACGAGTATT-TTTGAAAGTAG-TATCTTTCCAAAGGGCTTATGAAAATGTCCATTTCATCGCACAACGACAGAAATTGACCA--T-GCAATAGATCAC--GA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTTTTGCGGGATATT-CGCTGAATATATCAGTTTGTCTCTTGTTTCCTCTT-CTCTGAAACAAAAACATTGAAAACAAAAATTAATTATAAAAAAAAAAAAATAAAGGCT------TACACATTTTCCAAATTCAGATTAACGATCAAATCAGTTGTGAC-AAAAGCCAAGCAT---GTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTTTGGATTTACC-TTGACAT--AGTTTGTG-CC--CC-TGGTT-ATTTGGAG--ATTTCTGAGGACA--TCCAATACCTCCATTT---A--GATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AA-CAAGAATT--CAAA-GGTAATGTAACTCATTGAGGATACTGATAATTGTCAACTATAGTGTACATATTGTACAAGTAATAAAAAAATATTTAAGTGATCAACTTACAAGAAAA-----AACACTGCACATGAATACAGACCAACAAAGGA------------ATATGACAT-C---C-A-TACATCT-ATTTTTTTTTT-ATCAACAATCACCC---ATATCTGCA
gi|10                         :                                                                                                                                                                         TTTTAC----AAAA-CGTTT--TCACA--GTTTC-----AAAATGTTGTGACAACGTTTTA---AAAA-TAATACATT-----A-C---GTTATATTAACGTTTTAGACAAT-G-TTTCAAA----------AACATAATAG-T-AAAACATTT-T-CAAAAACG--T------TATGTTATA----ATAACGT-TAA--AAAA-Cacgc
gi|10                         :                                                                  cgtatatttgtatgAA-AATGTTTTACTATTATGT-TTTTGAAACATTGTCT---AAAAC--------------GTT-----AATATA-------ACGTAATGTATTATTTTTAAAA-CGTTG--TCACAACATTTTG----AAACTGT--GAA-AACGTTTTGTAAAAAA-CGTTaacgtt
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       cgtatatttgtatggttttttaacgttattataacataacgtttttgAAAAATTAATTATAAAAAAAATA---TATAGGGT------TACACATTTTCCAAATTCAGAT------------CAGTTGTGAC-AAAAGCCAAGCAT---GTTATTGCTTTAAAAATCT--TATTGGTGTT-----TTAAGTTC-CA-ATAGAAAGTTTGGATTTACC-TTGACAT--AGTTTATG-CC--CC-
gi|12                         :                                                                                                                                        CCCAGGT-----AGCACA-------AC--AGCGTTGTT-----AAAA-CGTTA--TTATAACGTTGTGG---AAATGTTCAGAA-AACATTTTCT--ATGA-CGTT--ATTACA--A-C---GTTAATTT---GT--------AT---TTT------------------T--TTT-T-AAAA-GTTA-T--TATAACGTTT------T-TG--A------A-AACGT-TTT--Act
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 cTTGACTTT-----TTA-GTTTCCA-ATTGAAG-TTTG-ATTTACCGTTGA-ATTGAGTTTTTT-CCTCCC-TG-TTTATTTGGAAACATTTCTGAGGACA--TCCA
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ttTGAGGACA--TCCAATACCTCCATTT---T--GATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGTAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGT
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATTTCATCGCACAACGACGGAAATTGACCAACT-GCAACATATCACATGA-TCAAAATATTAATCTCCTG-AGC
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                         T-GAAAACTTTTCA-TAA-AACATTATTGAAACGTTTT-
gi|2                          : aAGGTACAGCAATGTTTTAAAAACATTTTGATAACATTTAAAA-AATGTC----GG-----GAA------ACATTTA-TAA-AATGTTTTATTCACGTGA-TTTTGTG-TATGGTCCTCAGAAACATGTTTAAAAC----GTTTCTCAATACATTTGATCAC--AATGTTTTA-----AAAA-CATTTCTTGA-AACATTTTTTTTTAACTTCTCAGAA-AACATT--ATG-AAAA-CTTTTCATA-A---AAC---ATTATT-------------------------GA----------AACAT--TTTAT-AAAATGTTT-T-AT-TCACG--TGATTTGTATG--GTCTCAGA-AACATGTTT--AAAA-CGTT-TCTT-G-AA---ACATT-------TTTTTTAAC-TTCTCAGAAAC----------ATT---AT-GAAAACTTTTCATAAA-AACATTATTGAAACATTCT-ATAAAATGTT-TTATTCACA----------T-GATTT--------GT------ATGGT-CTCAGAAAAA------CA-TGTTT---AAAACCGTTTCTTGAAACATTTT-TTTT-AACTTCTCAGAAAC---------------------ATTATATAAC--ACATTT-CA-------CAAA---------ACATT---AAAAAAAACTT-------TTCAT--AAAACA-------TTTT-GAAACATTCCATAAA---TTTTATTTAA-AA-CCATAG-GATATGGATATAATT--TTACATAAGAATTTCA-TGACGAGTATTATTTGAAAGTAG-TATCTT-CCAAAGGGCTTATGAAAATGTCCATTTCATCGCACAACGACAAAAATTGACCA--T-GCAATAGATCAC--GA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTT-TGCGGGATATT-CGCTGAATATATCAGTTTGTCTCTTGTTCCCTCTTTCTCTGAAACAAAAACATTGAAAACAAAAATTAATTATAAAAAAAAAAA--TAAAGGCT------TACACATTTTCCAAATTCAGATTAACGATCAAATCAGTTGTGAC-AAAAGCCAAGCAT---GATATTGCTTTAAAAATCT--TATTGATGTTTTAACTTAAGTT--CA-ATTGAAGGTTTGGATTTACC--TGACAT--AGTTTGTG-CC--CCATGGTTTATTTGGAG-CATTTCTGAGGACA--TCCAATACCTCCATTTAGATAAGATG-----TTTTTG-----AT--GATA-----------AG-G-TTTT--------------TGAAAG-CTTTCGA--TGCTGCTTTAAGGTTTTCTTGAA-G-AT-TCC---ATGTGT-AATCGAGTACTGT
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                             cTTTTAAAAAC----------ATT---TT-GATAACATAT-A-AAA-AATGCCGGGAAAAC---------AAATGTT-TTATTCGCGTGATTTTGTAT-GATCTCAGAAACTGTTTTAAAACGTTTCTCAAAAATTTGATCACA-AGTTTTAAAAA--CATTTCTTGAAACATTTT-TTTTTAACTTCTCAGAAACATTATATAACATTTCAAAAACATTATG-A-A--AAATTT-TA-------TAAACATATTGAAACATTTCGAGAACAA-TTTGAAAATATTCAT--AAAACA-------TTTTTGAA-CATTCCATAAA---TTTTATT-AA-AA-TCATAG-G-TATG-ATATAATT--TTACATAA-AATTTCAATGACG-GTATTATTTGAA-GTAGATA-CTTTC--AAATGCTTATGGAAATGTCCATTTCATCGCACAACGACGGAAATTGACCAA-TTGCAATAGATCACATGA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTTCTGCGGGATATT-CGCTGAATACTTCAGTTTGTCTATTGTTTCCAATT-CTCTGAAACAAAAACATTGAAAAC--AAATTAATTAT----AAAAAAA--TAAAGGATTACGTATACACATTTTCCAAATTCAGATTAACGATTAAATCAGTTGTGAC-AAAAGCCAAACAT---GTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTTTGGATTTACC-TTGACAT--AGTTTGTGCCC--CC-TGGTTTATTTGGAG-CATTTCTGAGGACA--TCCAAAACCCCCATTT---T--GATG-----TCTTTGA----AT--GCTA-----------AGTTTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AA-CAAGAATTGTCAAAAGGTAATGTAACTCATTGAGGATACTGATAATTGTCAACTATAGTGTACATAGTGTACAAGTAATAAAAAAATATTTAAGTGATCAACTTGCAAGAAAAAAAACAACATTGCACATGAATACAAACCAACAAAGGAATACAAGGCCGTATATGA-AT-C---CTATTACATCT-A-ATGTCTTTT-ATC-ACAATCACCCATAATATCTGCA
gi|4                          :                                                                                                         acccaggtagcacagcaatgCG--------ACCCAGGG-----AGCACA-------GC--AATGTTTTA-----AAAAACATTT--TGATAACATTT-AA---AAAAT-TCGCGG-AACATTTTAT--AAAAATGTTTTATT-C---A-C---GTGATTTT---GT--------AT-GGTCTGAGA----------AACAT--GTT-T-AAAACGTTTCT-CAATAACA--T------T-TG--ATC----ACAATGT-TTT--AAAAACATT-TCTTTA-AA---ACATT-------TTTTT-AAC-TTCTCAGAAACTTATATACACATT---AT-GAAAACTTTTCA--TA-AACATTATTGAAACGTTTT-AGAAAATGTT-TTATTCACG----------TTGATTT-------T-T------ATGGT-CTCAGAA---------CA-TGTTT---AAA--CGTTTCTTGAAAC---TT-TTTT-AACTTCTCAGAAAC---------------------ATTATAAA-C--A--TTT-CA-------CAAA---------ACATTCT-AAGAAAA-CTT-------TTCAT--AAAACA-------TTTTGAAAACATTCCATAAA---TTTTATTT-A-AA-TCAT-G-GATACGGA-AT-ATT--TTACATAAGAATTTCAATGACGAGTATTA-TTGAAAGTCG-TATCTTTCCAAAGGGCTT-T-GAAATGTCCATTTCATCGC---ACGACAGAAATTGAC--A-T-GC-ATGGGTCACATGATTCAAAATATCAATCTCCTGCAGC-TTCTGAA-TTAGCATGTCTCCAGTCCGATTCTTCTGC-GGATATTCCGCTGAATATTTCAGTTTG-CTCTTGTTTCCTCTT-CTCTGAAACCAAATCAT--GAAACAAAAAT---TTATTAAAAAAAATA--TATAGGGT------TACACATTTTCC-AATTCAG------------ATCAGTTGTGACAAAAAGCCAAGCAT---GTTATTGCTTT-AAAATCTTATATTGGTGTT-----TTAGTTC--CATATAGAAAGTTTGGATTTACC-TT-ACAT--AGTTTATGCCC--CC-TGGTTTGTTTGGAG-CATTTCTGAGGACA--TCCAATACCTCCATTT---T--GTTGGAGCATTTCTGAGGACATCCAATACCTCCATTTTGAT-GTTTTTAATGATAAGGTTTTTGGTAGCCTTTCGAGCTGCTGC-GTAAAA-TTAGTTGAATGTATCTCTTAAATTCTTCAA-AAAGAAcg
gi|5                          :                                                                                                                           AATA--------ACCCCGGC-----AGCACA-------AC--AACGTTGTT-----AAAA-CGTTA--TTATAACGTTGTGA---AAATGTTCAGAA-AACATTTTCT--ATAA-CGTT--ATT-----A-CAAAGTTAATTT---GT--------AT-G-TTTTTTAACGTTATTATAACGT--TTT-CGAAAACGTTT-TACTATAATG--T------T-TT--A-C----A-AACGT-TTTCAAAAA-CGCTATCAT-G-AACGTAAATTTGTGTGGTTTTTTAACGTTATTAT-AAC----------GTT---TTCGAAAACGTTTTA-CTATAATGTTTTAGAAACGTTTTCA-AAAACGTTATCA-TAACG----------T-AAATT-------TGT------ATTTT-TTT--TAA--------CGTTATTA---AAA--CGTTTTTGAAAACGTTTTACTTT-AATGTTTTAGAAACGTT--------TTCTAAAA-CGTTATA-A-CGTAAATTTGTATGGTTTTTAAA---------ACGTT---ATCACAA-CAT-------TT-ATGAAAAACATGTTACGTTTTCAAAACATT--ATAAAAACTTTTTTTCAACAATTCAAAGAAATATAAAAATAACTAATTCTATAACAAT
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           atagttCAAGCATCGTGTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTT-GGATTTACC-TTGACAT--AGTTTGTG-CC--C--TGGTTTATTTGGAG-CATTTCTGAGGACA--CCCAATACCTCCATTA------GATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGC-T-AA-CAAGAATTGTCAAAGG--AATGTAACTCATTGAGGATACT-ATAATTGTCAACTATAGTGTACATATTGTACAAGTAAT--AAAAATATTTAAGTGATCAACTTACAAG-AAA-----AACACTGCACATGAATACAGACCAACAAAGGA------------ATATGACAT-C---C-A-TACATCTAATTTTTTTTTTAATC-ACAATCACCC---ATATCTGCAaaaacctttaacgaatatcctcat
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GACAATCCCTATACCTCAATTT---T--GATG-----TCTTT--------------------------------TT--------------TGGAAGCCTTGCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AA-CAAGAATTGTCAAAAGGTAATGTAACTCATTCAGGATACCGATAATTGTCAACTATAGTGTACATATTGTACAAGTAAT-AACAAATATTTAAGTGATCAACTTGCAAGAAAA-----AACATTGCACATAAAT--AGACCAACAGAGGA------------ATATGACATACATAC-A-TACATCT-ATTTTTcg
gi|9                          :                                                                                                                               --------ACCAAGGT-----AGCAGA-------GA--AATATTTTA-----AAAT-CAGGT--CAACAACATTT--A---AACGTTTTAAGA-AAAATAATATGCAAAG-CGTTTCATT-CTGAA-C---ATAATTTT----T--------ATAG-TCTCAAA----------AATAA--TTT-T-AAAACATTTCT-TCATAAAG--T------T-TT--CTC----AGAATGT-TTTC-AAAA-TGTT-T-TA-GCAA---ACA--------------CAA------TATAAAC----------ATTTAATT-TAATATTTTTC---CA-AACATTTCTGAAAC

Unaligned ( gi|7 ): CTCACGTTTTCGGAAAGGCCTAAAACGTTTTACAATAATTTTCTAAAACATTATTATAACGTAAATTTGTATGATGGCTTTTAAAAGGTTATAACAACATTTATGAAAAACATGTTACATTTTCAAAACATTTTAAAAAACGATTTTACAATTCAAAGAAATATTTAAATAACAATAAAATCTTTAATGAATATCCTCAAAGCTTGTCATGGATATTACTTATCAACTGTCCATCAAAACACAAGTGCTTGTTGAAAATGAAAATTGTAATCATCGA
Unaligned ( gi|16 ): GTTATTACAACGTTAATTTGTATGTTTTTTTTAACGTTATCATAACTTTTTTGAAAACGTTTTAC
Unaligned ( gi|17 ): TCATAATGCAAATTTGTGGTTTTTTTAACGTTATTACAACATTTATGAA

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 11111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
lowQualScore                  :            1         22222           11    1      33333333333333333333       1   1       111        1      22       3333     222222222        11111      11111111111         11111                       222222                       11         11   22222   111        444444444444444444444444444444444444                     11111         333333333333333333333        111                   111      2222222                    2222222222   1111              111                    2222                  3333333333       4444444444444444             444444444        111   11                                      11111111111111111111       222222          2222222   333333333     222           2222222     11       2222222   1               111                                    11                                        1                                                            11              11                                              1                         1                                   1                                               111        222222                      1111111111                          111                               11111       11                                         1                                                      111111    11111      11111        22222222222         33333333333333                                                                                                                                            1                                 22222                                555555555555         1 1111111       1           1   1          222         
lowQualScore                  :            5         77777     22    88    5      11111111111111111111       5   3       000        3      55       5555     888888888  222   44444      99999999999         77777    5    777 1 4       555555   1 5 11   5      0   88    5    00   99999 5 000  1     555555555555555555555555555555555555    77   5 5         11111      77 333333333333333333333     5  555    6    8    999  444   0  6666666    3   8  1   1    9999999999   2222 5            555 5   1  0       3   1111        8    0    5555555555 8     0000000000000000     8    3  000000000   8    444   11             3    8    8              44444444444444444444       000000 8    8   6666666   222222222     555    0  8   6666666     11       6666666   1   0           444       44 8  8    0 8 0    3 6  0   11        5       3     3     66     3    0  3   3 2         3 2                   0                   88 8  0         11  8                   8   3       3           0             6   2       0          1        3               0                 3      0     0      6         111  1   1 333333            0       0 2222222222            8             111                   99          44444   0   33  5                    5       77        1  77  5              6              66                999999    44444      33333  77    77777777777  5 1    33333333333333                             5              6          2 6  6              7 2                       2                                      5                             3   55555                3               111111111111      2  0 8888888       0 3         3   3          333         
lowQualScore                  :            .         .....     ..    ..    .      ....................       .   .       ...        .      ..       ....     .........  ...   .....      ...........         .....    .    ... . .       ......   . . ..   .      .   ..    .    ..   ..... . ...  .     ....................................    ..   . .         .....      .. .....................     .  ...    .    .    ...  ...   .  .......    .   .  .   .    ..........   .... .            ... .   .  .       .   ....        .    .    .......... .     ................     .    .  .........   .    ...   ..             .    .    .              ....................       ...... .    .   .......   .........     ...    .  .   .......     ..       .......   .   .           ...       .. .  .    . . .    . .  .   ..        .       .     .     ..     .    .  .   . .         . .                   .                   .. .  .         ..  .                   .   .       .           .             .   .       .          .        .               .                 .      .     .      .         ...  .   . ......            .       . ..........            .             ...                   ..          .....   .   ..  .                    .       ..        .  ..  .              .              ..                ......    .....      .....  ..    ...........  . .    ..............                             .              .          . .  .              . .                       .                                      .                             .   .....                .               ............      .  . .......       . .         .   .          ...         
lowQualScore                  :            5         00000     00    55    0      00000000000000000000       5   3       000        3      33       3333     000000000  777   33333      11111111111         55555    0    444 0 2       666666   0 9 44   0      4   88    0    44   33333 7 000  6     666666666666666666666666666666666666    99   7 7         77777      99 999999999999999999999     7  333    7    0    222  000   8  0000000    8   0  0   0    2222222222   7777 7            333 7   4  6       7   6666        0    8    0000000000 0     8888888888888888     0    2  888888888   0    000   00             8    0    0              44444444444444444444       888888 8    0   0000000   000000000     000    6  0   0000000     00       0000000   4   8           000       66 0  0    8 0 8    2 0  8   00        0       2     2     55     2    0  2   2 5         2 5                   8                   66 0  8         22  0                   0   2       2           0             5   5       0          0        2               0                 2      8     8      0         888  4   0 000000            8       8 4444444444            0             777                   22          33333   1   66  7                    7       99        4  99  7              7              99                666666    33333      66666  99    11111111111  7 4    66666666666666                             7              7          5 7  7              0 5                       5                                      5                             2   00000                2               222222222222      5  0 5555555       0 2         3   3          333         
consensus                     :  AGGTGCAGCAATGTTTTAAAAACATCTTGANNACATTTAAGAGAATGCCCAACGGCATGCGAATTTACGACATTCAATAA-AATGTTTTACTCACGTGA-TTTTGTG-CATGGTCC---GAAACA--------ACCCAGGT-----AGCACA-------GC--AATGTTTTA-----AAAA-CGTTT--TNACAACGTTTTGA---AAANTNTCGGGA-AACATTTTAT--AAAA-CGTTTCATT-C---A-C---GTTATTTT---GT--------AT-G-TCTCAGAA----------ACAT--TTT-T-AAAACGTTT-T-CTATAACG--T------T-TG--ATC----A-AACGT-TTT--AAAA-CGTT-TCTT-G-AA---ACATTT-------TTTTTAAC-TTCTCAGAAAC----------ATT---NT-GAAAACTTTTCA-ANA-AACGTTATTGAAACGTTTT-A-AAAATGTT-TTATTCACG----------T-GATTT-------TGT------ATGGT-CTCAGAAA--------CAT-GTTT---AAA--CGTTTCTTGAAACATTTT-TTTT-AACTTCTCAGAAAC-TT--------TT--AAAA-CATTATATA-C--ANATTT-CAC-------AAA---------ACATT---AAAAAAA-CTT-------TTCAT--AAAACAT-------TTTCGAAACATTCCATAAA---TTTTATTTAA-AA-TCATAG-GATATGGATATAATT--TTACATAAGAATTTCAATGACGAGTATTATTTGAAAGTAG-TATCTTTCCAAAGGGCTTATGGAAATGTCCATTTCATCGCACAACGACGGAAATTGACCAA-T-GCAATAGATCACATGA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTTCTGCGGGATATT-CGCTGAATATNTCAGTTTGTCTCTTGTTTCCTCTT-CTCTGAAACAAAAACATTGAAAACAAAAATTAATTATAAAAAAAAAAA--TAAAGGNT------TACACATTTTCCAAATTCAGATTAACGATCAAATCAGTTGTGAC-AAAAGCCAAGCAT---GTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTTTGGATTTACC-TTGACAT--AGTTTGTG-CC--CC-TGGTTTATTTGGAG-CATTTCTGAGGACA--TCCAATACCTCCATTT---T--GATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AA-CAAGAATTGTCAAAAGGTAATGTAACTCATTGAGGATACTGATAATTGTCAACTATAGTGTACATATTGTACAAGTAATAAAAAAATATTTAAGTGATCAACTTGCAAGAAAA-----AACACTGCACATGAATACAGACCAACAAAGGA------------ATATGACAT-C---C-A-TACATCT-ATTTTTTTTTT-ATC-ACAATCACCC---ATATCTGCA
Reference ( family-2818 )     :  AGGTGCAGCAATGTTTTAAAAACATCTTGANNACATTTAAGAGAATGCCCAACGGCATGCGAATTTACGACATTCAATAA-AATGTTTTACTCACGTGA-TTTTGTG-CATGGTCC---GAAACA--------ACCCAGGT-----AGCACA-------GC--AATGTTTTA-----AAAA-CGTTT--TNACAACGTTTTGA---AAANTNTCGGGA-AACATTTTAT--AAAA-CGTTTCATT-C---A-C---GTTATTTT---GT--------AT-G-TCTCAGAA----------ACAT--TTT-T-AAAACGTTT-T-CTATAACG--T------T-TG--ATC----A-AACGT-TTT--AAAA-CGTT-TCTT-G-AA---ACATTT-------TTTTTAAC-TTCTCAGAAAC----------ATT---NT-GAAAACTTTTCA-ANA-AACGTTATTGAAACGTTTT-A-AAAATGTT-TTATTCACG----------T-GATTT-------TGT------ATGGT-CTCAGAAA--------CAT-GTTT---AAA--CGTTTCTTGAAACATTTT-TTTT-AACTTCTCAGAAAC-----------TTTTAAAA-CATTATATA-C--ANATTT-CAC-------AAA---------ACATT---AAAAAAA-CTT-------TTCAT--AAAACAT-------TTTCGAAACATTCCATAAA---TTTTATTTAA-AA-TCATAG-GATATGGATATAATT--TTACATAAGAATTTCAATGACGAGTATTATTTGAAAGTAG-TATCTTTCCAAAGGGCTTATGGAAATGTCCATTTCATCGCACAACGACGGAAATTGACCAA-T-GCAATAGATCACATGA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTTCTGCGGGATATT-CGCTGAATATNTCAGTTTGTCTCTTGTTTCCTCTT-CTCTGAAACAAAAACATTGAAAACAAAAATTAATTATAAAAAAAAAAA--TAAAGGNT------TACACATTTTCCAAATTCAGATTAACGATCAAATCAGTTGTGAC-AAAAGCCAAGCAT---GTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTTTGGATTTACC-TTGACAT--AGTTTGTG-CC--CC-TGGTTTATTTGGAG-CATTTCTGAGGACA--TCCAATACCTCCATTT---T--GATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AA-CAAGAATTGTCAAAAGGTAATGTAACTCATTGAGGATACTGATAATTGTCAACTATAGTGTACATATTGTACAAGTAATAAAAAAATATTTAAGTGATCAACTTGCAAGAAAA-----AACACTGCACATGAATACAGACCAACAAAGGA------------ATATGACAT-C---C-A-TACATCT-ATTTTTTTTTT-ATC-ACAATCACCC---ATATCTGCA
gi|1                          :  AGGTGCAGCA-TGTTTTAAA-----CTTGAGTACAT--AAGAGAATGCCCAACGGCATGCGAATTTACGACATTCAATAACAATGTTT----CACGTGAATTTTGT--CATGGTT----GAGACA--------ACCCAGGT-----AGCACA-------GC--AATGTTTTA-----AAAA-CATTT--TGATAACATTTTAA---AAAATGTCGGGA-AACATTTTAT--AAAA-TGTTTTATT-C---A-C---GTGATTTT---GT--------AT-GGTCTCAGAA----------ACAT--GTT-T-AAAACGTTT-T-CTATAAC---T------T-TG--ATC----A-AATGT-TT---AAAA-CATT-TCTT-G-AA---ACATTT-------TTTTTAAC-TTCTCAGAAAC----------ATT---AT-GAAAACTTTTCA-ATA-AACATTATTGAAACATTT--A-AAAATGTT-TTATTCACG----------T-GATTT-------TGT------ATGGT-CTCAGAAA--------CAT-GTTT---AAA--CTTTTCTTGAAACATTTT-TTTT-AACTTCTCAGAAA-------------------A-CATTATATA-C--ACATTT-CAC-------AAA---------ACATT---AAAAAAA-CTT-------TTCAT--AAAACAT-------TTTTGAAACATTCCATAAA---TTTTATTTAA-AA-CCATAG-GATATGGATATAATT--TTACATAAGATTTTCAATGACGAGTATT-TTTGAAAGTAG-TATCTTTCCAAAGGGCTTATGAAAATGTCCATTTCATCGCACAACGACAGAAATTGACCA--T-GCAATAGATCAC--GA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTTTTGCGGGATATT-CGCTGAATATATCAGTTTGTCTCTTGTTTCCTCTT-CTCTGAAACAAAAACATTGAAAACAAAAATTAATTATAAAAAAAAAAAAATAAAGGCT------TACACATTTTCCAAATTCAGATTAACGATCAAATCAGTTGTGAC-AAAAGCCAAGCAT---GTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTTTGGATTTACC-TTGACAT--AGTTTGTG-CC--CC-TGGTT-ATTTGGAG--ATTTCTGAGGACA--TCCAATACCTCCATTT---A--GATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AA-CAAGAATT--CAAA-GGTAATGTAACTCATTGAGGATACTGATAATTGTCAACTATAGTGTACATATTGTACAAGTAATAAAAAAATATTTAAGTGATCAACTTACAAGAAAA-----AACACTGCACATGAATACAGACCAACAAAGGA------------ATATGACAT-C---C-A-TACATCT-ATTTTTTTTTT-ATCAACAATCACCC---ATATCTGCA
gi|10                         :                                                                                                                                                                         TTTTAC----AAAA-CGTTT--TCACA--GTTTC-----AAAATGTTGTGACAACGTTTTA---AAAA-TAATACATT-----A-C---GTTATATTAACGTTTTAGACAAT-G-TTTCAAAA----------ACATAATAG-T-AAAACATTT-T-CAAAAACG--T------TATGTTATA----ATAACGT-TAA--AAAA-Cacgc
gi|10                         :                                                                  cgtatatttgtatgAA-AATGTTTTACTATTATGT-TTTTGAAACATTGTCT---AAAAC--------------GTT-----AATATA-------ACGTAATGTATTATTTTTAAAA-CGTTG--TCACAACATTTTG----AAACTGT--GAA-AACGTTTTGTAAAAAA-CGTTaacgtt
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       cgtatatttgtatggttttttaacgttattataacataacgtttttgAAAAATTAATTATAAAAAAAATA---TATAGGGT------TACACATTTTCCAAATTCAGAT------------CAGTTGTGAC-AAAAGCCAAGCAT---GTTATTGCTTTAAAAATCT--TATTGGTGTT-----TTAAGTTC-CA-ATAGAAAGTTTGGATTTACC-TTGACAT--AGTTTATG-CC--CC-
gi|12                         :                                                                                                                                        CCCAGGT-----AGCACA-------AC--AGCGTTGTT-----AAAA-CGTTA--TTATAACGTTGTGG---AAATGTTCAGAA-AACATTTTCT--ATGA-CGTT--ATTACA--A-C---GTTAATTT---GT--------AT---TTT------------------T--TTT-T-AAAA-GTTA-T--TATAACGTTT------T-TG--A------A-AACGT-TTT--Act
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 cTTGACTTT-----TTA-GTTTCCA-ATTGAAG-TTTG-ATTTACCGTTGA-ATTGAGTTTTTT-CCTCCC-TG-TTTATTTGGAAACATTTCTGAGGACA--TCCA
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ttTGAGGACA--TCCAATACCTCCATTT---T--GATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGTAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGT
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATTTCATCGCACAACGACGGAAATTGACCAACT-GCAACATATCACATGA-TCAAAATATTAATCTCCTG-AGC
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                         T-GAAAACTTTTCA-TAA-AACATTATTGAAACGTTTT-
gi|2                          : aAGGTACAGCAATGTTTTAAAAACATTTTGATAACATTTAAAA-AATGTC----GG-----GAA------ACATTTA-TAA-AATGTTTTATTCACGTGA-TTTTGTG-TATGGTCCTCAGAAACATGTTTAAAAC----GTTTCTCAATACATTTGATCAC--AATGTTTTA-----AAAA-CATTTCTTGA-AACATTTTTTTTTAACTTCTCAGAA-AACATT--ATG-AAAA-CTTTTCATA-A---AAC---ATTATT-------------------------GAA----------ACAT--TTTAT-AAAATGTTT-T-AT-TCACG--TGATTTGTATG--GTCTCAGA-AACATGTTT--AAAA-CGTT-TCTT-G-AA---ACATTT-------TTTTTAAC-TTCTCAGAAAC----------ATT---AT-GAAAACTTTTCATAAA-AACATTATTGAAACATTCT-ATAAAATGTT-TTATTCACA----------T-GATTT--------GT------ATGGT-CTCAGAAAAA------CAT-GTTT---AAAACCGTTTCTTGAAACATTTT-TTTT-AACTTCTCAGAAAC---------------------ATTATATAAC--ACATTT-CAC-------AAA---------ACATT---AAAAAAAACTT-------TTCAT--AAAACAT-------TTT-GAAACATTCCATAAA---TTTTATTTAA-AA-CCATAG-GATATGGATATAATT--TTACATAAGAATTTCA-TGACGAGTATTATTTGAAAGTAG-TATCTT-CCAAAGGGCTTATGAAAATGTCCATTTCATCGCACAACGACAAAAATTGACCA--T-GCAATAGATCAC--GA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTT-TGCGGGATATT-CGCTGAATATATCAGTTTGTCTCTTGTTCCCTCTTTCTCTGAAACAAAAACATTGAAAACAAAAATTAATTATAAAAAAAAAAA--TAAAGGCT------TACACATTTTCCAAATTCAGATTAACGATCAAATCAGTTGTGAC-AAAAGCCAAGCAT---GATATTGCTTTAAAAATCT--TATTGATGTTTTAACTTAAGTT--CA-ATTGAAGGTTTGGATTTACC--TGACAT--AGTTTGTG-CC--CCATGGTTTATTTGGAG-CATTTCTGAGGACA--TCCAATACCTCCATTTAGATAAGATG-----TTTTTG-----AT--GATA-----------AG-G-TTTT--------------TGAAAG-CTTTCGA--TGCTGCTTTAAGGTTTTCTTGAA-G-AT-TCC---ATGTGT-AATCGAGTACTGT
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                             cTTTTAAAAAC----------ATT---TT-GATAACATAT-A-AAA-AATGCCGGGAAAAC---------AAATGTT-TTATTCGCGTGATTTTGTAT-GATCTCAGAAACTGTTTTAAAACGTTTCTCAAAAATTTGATCACAA-GTTTTAAAAA--CATTTCTTGAAACATTTT-TTTTTAACTTCTCAGAAACATTATATAACATTTCAAAAACATTATG-A-A--AAATTT-TAT-------AAACATATTGAAACATTTCGAGAACAA-TTTGAAAATATTCAT--AAAACAT-------TTTTGAA-CATTCCATAAA---TTTTATT-AA-AA-TCATAG-G-TATG-ATATAATT--TTACATAA-AATTTCAATGACG-GTATTATTTGAA-GTAGATA-CTTTC--AAATGCTTATGGAAATGTCCATTTCATCGCACAACGACGGAAATTGACCAA-TTGCAATAGATCACATGA-TCAAAATATTAATCTCCTG-AGCTTTCTGAATTTAGCATGTCT-CAGTCTAATTCTTCTGCGGGATATT-CGCTGAATACTTCAGTTTGTCTATTGTTTCCAATT-CTCTGAAACAAAAACATTGAAAAC--AAATTAATTAT----AAAAAAA--TAAAGGATTACGTATACACATTTTCCAAATTCAGATTAACGATTAAATCAGTTGTGAC-AAAAGCCAAACAT---GTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTTTGGATTTACC-TTGACAT--AGTTTGTGCCC--CC-TGGTTTATTTGGAG-CATTTCTGAGGACA--TCCAAAACCCCCATTT---T--GATG-----TCTTTGA----AT--GCTA-----------AGTTTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AA-CAAGAATTGTCAAAAGGTAATGTAACTCATTGAGGATACTGATAATTGTCAACTATAGTGTACATAGTGTACAAGTAATAAAAAAATATTTAAGTGATCAACTTGCAAGAAAAAAAACAACATTGCACATGAATACAAACCAACAAAGGAATACAAGGCCGTATATGA-AT-C---CTATTACATCT-A-ATGTCTTTT-ATC-ACAATCACCCATAATATCTGCA
gi|4                          :                                                                                                         acccaggtagcacagcaatgCG--------ACCCAGGG-----AGCACA-------GC--AATGTTTTA-----AAAAACATTT--TGATAACATTT-AA---AAAAT-TCGCGG-AACATTTTAT--AAAAATGTTTTATT-C---A-C---GTGATTTT---GT--------AT-GGTCTGAGAA----------ACAT--GTT-T-AAAACGTTTCT-CAATAACA--T------T-TG--ATC----ACAATGT-TTT--AAAAACATT-TCTTTA-AA---ACATTT-------TTTT-AAC-TTCTCAGAAACTTATATACACATT---AT-GAAAACTTTTCA--TA-AACATTATTGAAACGTTTT-AGAAAATGTT-TTATTCACG----------TTGATTT-------T-T------ATGGT-CTCAGAA---------CAT-GTTT---AAA--CGTTTCTTGAAAC---TT-TTTT-AACTTCTCAGAAAC---------------------ATTATAAA-C--A--TTT-CAC-------AAA---------ACATTCT-AAGAAAA-CTT-------TTCAT--AAAACAT-------TTTGAAAACATTCCATAAA---TTTTATTT-A-AA-TCAT-G-GATACGGA-AT-ATT--TTACATAAGAATTTCAATGACGAGTATTA-TTGAAAGTCG-TATCTTTCCAAAGGGCTT-T-GAAATGTCCATTTCATCGC---ACGACAGAAATTGAC--A-T-GC-ATGGGTCACATGATTCAAAATATCAATCTCCTGCAGC-TTCTGAA-TTAGCATGTCTCCAGTCCGATTCTTCTGC-GGATATTCCGCTGAATATTTCAGTTTG-CTCTTGTTTCCTCTT-CTCTGAAACCAAATCAT--GAAACAAAAAT---TTATTAAAAAAAATA--TATAGGGT------TACACATTTTCC-AATTCAG------------ATCAGTTGTGACAAAAAGCCAAGCAT---GTTATTGCTTT-AAAATCTTATATTGGTGTT-----TTAGTTC--CATATAGAAAGTTTGGATTTACC-TT-ACAT--AGTTTATGCCC--CC-TGGTTTGTTTGGAG-CATTTCTGAGGACA--TCCAATACCTCCATTT---T--GTTGGAGCATTTCTGAGGACATCCAATACCTCCATTTTGAT-GTTTTTAATGATAAGGTTTTTGGTAGCCTTTCGAGCTGCTGC-GTAAAA-TTAGTTGAATGTATCTCTTAAATTCTTCAA-AAAGAAcg
gi|5                          :                                                                                                                           AATA--------ACCCCGGC-----AGCACA-------AC--AACGTTGTT-----AAAA-CGTTA--TTATAACGTTGTGA---AAATGTTCAGAA-AACATTTTCT--ATAA-CGTT--ATT-----A-CAAAGTTAATTT---GT--------AT-G-TTTTTTAACGTTATTATAACGT--TTT-CGAAAACGTTT-TACTATAATG--T------T-TT--A-C----A-AACGT-TTTCAAAAA-CGCTATCAT-G-AACGTAAATTTGTGTGGTTTTTTAACGTTATTATAA-C----------GTT---TTCGAAAACGTTTTA-CTATAATGTTTTAGAAACGTTTTCA-AAAACGTTATCAT-AACG----------T-AAATT-------TGT------ATTTT-TTTT--AA--------CGTTATTA---AAA--CGTTTTTGAAAACGTTTTACTTT-AATGTTTTAGAAACGTT--------TTCTAAAA-CGTTATA-A-CGTAAATTTGTATGGTTTTTAAA---------ACGTT---ATCACAA-CAT-------TT-ATGAAAAACATGTTACGTTTTCAAAACATT--ATAAAAACTTTTTTTCAACAATTCAAAGAAATATAAAAATAACTAATTCTATAACAAT
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           atagttCAAGCATCGTGTTATTGCTTTAAAAATCT--TATTGATGTT-----TTAAGTT--CA-ATTGAAGGTT-GGATTTACC-TTGACAT--AGTTTGTG-CC--C--TGGTTTATTTGGAG-CATTTCTGAGGACA--CCCAATACCTCCATTA------GATG-----TTTTTGA----AT--GATA-----------AG-GTTTTT--------------TGGAAGCCTTTCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGC-T-AA-CAAGAATTGTCAAAGG--AATGTAACTCATTGAGGATACT-ATAATTGTCAACTATAGTGTACATATTGTACAAGTAAT--AAAAATATTTAAGTGATCAACTTACAAG-AAA-----AACACTGCACATGAATACAGACCAACAAAGGA------------ATATGACAT-C---C-A-TACATCTAATTTTTTTTTTAATC-ACAATCACCC---ATATCTGCAaaaacctttaacgaatatcctcat
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GACAATCCCTATACCTCAATTT---T--GATG-----TCTTT--------------------------------TT--------------TGGAAGCCTTGCGAGCTGCTGCTGTAAAA-TTAGTTGAATGTAT-TCTTCAATGCGT-AA-CAAGAATTGTCAAAAGGTAATGTAACTCATTCAGGATACCGATAATTGTCAACTATAGTGTACATATTGTACAAGTAAT-AACAAATATTTAAGTGATCAACTTGCAAGAAAA-----AACATTGCACATAAAT--AGACCAACAGAGGA------------ATATGACATACATAC-A-TACATCT-ATTTTTcg
gi|9                          :                                                                                                                               --------ACCAAGGT-----AGCAGA-------GA--AATATTTTA-----AAAT-CAGGT--CAACAACATTT--A---AACGTTTTAAGA-AAAATAATATGCAAAG-CGTTTCATT-CTGAA-C---ATAATTTT----T--------ATAG-TCTCAAAA----------ATAA--TTT-T-AAAACATTTCT-TCATAAAG--T------T-TT--CTC----AGAATGT-TTTC-AAAA-TGTT-T-TA-GCAA---ACA--------------CAA------TATAAAC----------ATTTAATT-TAATATTTTTC---CA-AACATTTCTGAAAC