lowQualScore : 1111111111111111111111111111111111
lowQualScore : 111111111 333333333333333333333333333333333333333333333333333 11 222 22 1111 11111111111 1 111 9999999 2 2 55555555 333333333333333 11 555555555 1111 1111111111111111111 11 111 2 11 111 1111 3333 111111 22222222 11111 111111 1111 2222222 333333333 111 333 555555 222222 222222 3 22222222222222222 555555555 1111 3333 222222 11 111 222222222222222222222 111111111 222 0000000000000000000000000000000000
lowQualScore : 4 5 77 4 3 22 333333333 0 1 555555 1 333 888888888888888888888888888888888888888888888888888 1 22 1 3 22 333 3 444 33 88888888888 2 55 11 7777 3 999 666 3 11 3 3 3 55 88 1111 99999999999 1 55 8 4 4 4 7 333 4 4444444 66 3 5 2 4 0 8 4 77777777 777 111111111111111 11 111111111 66 0000 55 5 3 7777777777777777777 88 66 999 4 0 6 4 5 5 5 22 666 333 0000 5 5 3 5 3 5 4 0000 666666 4 22222222 4 4 4 77777 88888 66 66 777777 66 777 00 6666 1 4 9999999 5 66 66 5 555555555 111 222 555555 6 99 4 5 5 5 000000 999999 5 4 66666666666666666 111111111 3 0000 5 3 55 5 5 1111 5 5 5 7 3 3 777777 55 666 1 55555 111111111111111111111 5 44444 1 0 1 1 1 777777777 444 6666 000 2 1 2 8888888888888888888888888888888888 2 5
lowQualScore : . . .. . . .. ......... . . ...... . ... ................................................... . .. . . .. ... . ... .. ........... . .. .. .... . ... ... . .. . . . .. .. .... ........... . .. . . . . . ... . ....... .. . . . . . . . ........ ... ............... .. ......... .. .... .. . . ................... .. .. ... . . . . . . . .. ... ... .... . . . . . . . .... ...... . ........ . . . ..... ..... .. .. ...... .. ... .. .... . . ....... . .. .. . ......... ... ... ...... . .. . . . . ...... ...... . . ................. ......... . .... . . .. . . .... . . . . . . ...... .. ... . ..... ..................... . ..... . . . . . ......... ... .... ... . . . .................................. . .
lowQualScore : 3 4 99 2 3 99 666666666 2 9 555555 9 333 555555555555555555555555555555555555555555555555555 7 44 7 5 44 222 8 444 77 77777777777 7 88 99 1111 3 222 444 6 66 6 6 6 00 66 4444 22222222222 4 55 0 0 4 4 5 444 4 3333333 99 6 0 2 4 6 0 4 22222222 222 222222222222222 99 555555555 99 6666 11 0 4 8888888888888888888 44 11 333 4 7 7 4 0 0 0 66 222 888 9999 0 0 6 0 2 0 0 6666 777777 4 77777777 4 4 4 33333 77777 11 11 222222 11 888 55 6666 6 4 6666666 0 99 11 0 000000000 777 555 222222 7 22 3 7 7 7 000000 666666 7 3 77777777777777777 444444444 6 6666 0 6 22 0 0 1111 0 0 0 2 6 6 444444 55 666 9 11111 999999999999999999999 5 55555 8 9 3 8 9 666666666 555 2222 222 1 1 1 3333333333333333333333333333333333 2 0
consensus : GTTGGGTACCGCGAAGAAAAAACGTACCGCGGTA--TA-CCGTGAT--ATTT-------GAAAAATA-CCG------C-GGT---A-----T-------A--------TA-----CC--------------A-----C-G--G-T-ATAC--CGC---AG-ATT---TA--A------T---CT-TTAGTAAAAACGATTCCAT----TA-TTATCGTTT---TT-AGTTGTGATTT-AT-TG-C--ATA--TAAT----CA----------GCCGTTAAT--TCCTCCAA-TG-TAAAT-AAAAAAGGGAAAGTATCTNATTTAAATT-CAT-----ATTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCTGAACAT-AAAAATA-AG-------ATATA--TAATC---------------TT--ATAC-A-ATA--ACTAT--ACAGC----AGTG-TCT-CCGCATCTTGTCT----ACACGC----AAGTTTTACTCGGGG-TTT--GTCTAAATTG-GCGTAAATGG-CAT-TCG-ACCT-GGGT-AAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACNT-GATANTAAATG--TTTTCTTTAATAAAATAG-AAT-A--TC--TT-CCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------T--TCTT---ATCATAAATAATAAATTAATTG-TTTTNACATA-TGTAA-TTCATACGT--TTACC-CT--T------AGAGGC---TATT-GTACT---G-T-ATTA--GACATACCTTTGAGTTT-C-A-TTACGATGGG---ATGAAG--TA--A-AATAAAGTGAGTCACA-AGCTTAC-------ATAGGTACTTATAN--------ATAGGCATATTATT----TG-TGTTTCTCTTGATATTTAATTA-T-TTT--CGC-TTTGTT-T-AAATTTTACATTTTTGCT-AAGAGTT---TATTGGACTTG-AATGTACCGG-TAT----TT--GGC---T--T---TN----T-G-----TA-CCGCGG-TACGTA-C--C--G---GTACA-A-AA----A---A-AGT-ACCGGTACA---C--------TTCA-CAGTCCA----ATAA--CCGCGCACCTC
Reference ( gi|2 ) : GTTGGGTACCACGAAGAAAAAACGCACCGCGGTA--TA-CCGTAAT--ATTT-------GAAAAATA-CCG------C-GGT---A-----C-------A--------TA-----CC--------------A-----C-G--G-T-ATAC--CGC---AG-ATT---TA--A------T---TT-TTAGCAAAAACGATTCCAT----TA-TT---GTTT---TT-AGTTGCTATTT-AT-TG-C--ATA--TAAT----CA----------ACTGTTAAT--TCCTCCAA-TG-TAAAT-AAAAGAGAGAACGTATTTAATTTAAATT-CATTAATGATTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCT-AACAT-ACAAGTA-AG---A-G-ATATA--TAATC---------------TT--ATAC-ATATA--ACTAT--ACAGC----AGTG-TCT-CTGCATCTTGTCT----ACACGC----AAGTTTTACTCGGGT-TTT--GTCTAAATTG-GCGTAAAT-G-CAT-TTG-ACCT-GGGG-AAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATAATAAA-G--TTTTCTTTAAAAAAATAG-AAT-A--TC--TT-CCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------T--TTTT---ATCATAAATAAGAAATTAATTG-TTTTAACGGA-TGTAA-TTCATACGT--TTGTC-CT--A------AGAGGC---TA-T-GTAC----G-T-ATTA--GACATACCTTTGAGTTT-C-A-TTACGAT-GG---ATGAAG--TA--A-AATAAAGTGAG-CACA-AGCTTAC-------ATAGGTACTTATA---------ATAGGCATATTATT----TG-TGTTTCTCTTGATATTTAATTA-T-TTT--C-C-TTTGTT-T-AAATTTAACATTTTTGCT-AAGAGTT---TATTGAGCTTGAAATATACCGG-TAT----TT--GGC---T--T---TC----T-G-----TA-CCGCGG-TACGTA-C--C--A---GTACA-A-AA----A---A-AGT-ACCGGTACA---C--GTATATTTCACCAGTATA----ATAAT-CCGTGCATCTC
gi|3 : GTTGG-TACGGCGAAGAAAAAGCGTACCGCGGTAA-TA-CCG-GATGAATTT-------GAAAAATA-CCG------C-GGT---A-----C-------A--------TA-----CC--------------------C-G--G-T-ATATAACGC---AG-ATT---TA--A------T---TTCTTAGTAA-----------T----TA-TC---GTTT---TT-GCTTGTTATTTCAT-TGGC--ATA--TAAT----CA----------ACTGTTAATAATCCTCCAAATGGTAAAT-AAAAGAGAGAAACTATTTAATTTAAATTTCATC------TTTCAAA--TC-GTGACAGAACCAAAG-TTTATTCTGAACAT-AAAAATA-AT--------TATA--TAATC---------------TT--ATACGAAATA---CTAT--ACAGC----AGT---CT-CTGCACTATGTCT----ACACGC----AAGTTTTACTCGGGG-TTT--G-CTTAATTG-GCGTAAAT-G-CCT-TTG-ACCTGGGGG-AAACAC-AT---TCAACATGA--AAAT-ATTTAAAAATCT-ACAT-GATAATAAATGGTTTTTCTTT--AAAAATAGAAAT-AGCTT--TT-CCATCTGAT-A---ATTTTA---ATTTTGATG--TGGGTT------T--TTTT----------------------TTT-TTTTA---TA-TGTAAGTTCATACGT--TTGCC-CT--T------AGAGGC---TATT-GTACT---G-T-TATA--TACATATATTTGAGTTT-CAA-TTACGATGGG---ATGAAG--TAATA-AAAAAAGTGAGTCACACAGCTTAC-------ATAGGTACTTATAT--------ATAGGCATA-TATT----TG-TGTTTCTCTTGATATTTAATTA-T-TTT--C-CTTTTGTT-TAAAATTTAACATTTTTGCTAAAGAGCT---T-TTGGACTTG-AATGTACCGG-TAT----TTTGGGC------T---TC----T-G-----TA-CCGCGG-T-CGTA-C--CCAA---GTAC--A-AA----A---A-AGT-ACCGGTACA---A--A-ATAT----CCGGTATACCCGGTAATACCGCGCACCTC
gi|8 : GTTTGGTACCACGAAGAAAAAACGTACCGCGGTA--TA-CCGTAAT--ATTT-------GAAAAATA-CCG------C-GGT---A-----C-------A--------TA-----CC--------------A-----C-A--G-T-ATAC--CGC---AG-ATT---TA--A------T---TT-TCAGTAAAAACGATTCCAT----TA-TTATCGTTT---TT-AGTTGTGATTT-AT-TG-C--ATA--TAAT----CA----------ACTGTTAAT--TCCTCCTA-TG-TAAAT-AAAAGAGAGAAAGTAT---ATTTAAGTT-C-------ATCTTCAAA--TCTGTGACAGAACTAAAGTTTTATGCG-AACAT-A-AAATA-AA---A-GAATATATTTAATC---------------TT--ATAC-AAGT---ACTAT--ACAGC----AG-G-TCTCCCGCATCTTG-CTGTAAACACGC-----AGTTTTACTCGGGCGTTT--GTCTAA--TGTGCGTAAATGG-CATCTTGCACCT-GGGG-AAAC-CAATA--TCAAAAT-A--AAATAATTT-ATAATCT-ACTTCGATAATAAG-T--TTTTTCTTTAAAAATTTG-AATAA--TC--TT-CCAT-CGATAA---A-TTGA---ATTTTGATG--T--TTTTTTTTAT--TTTT---ATCATAAA
gi|4 : aGTTGGGTACCGCGAAGACACAACGTA--GCGGTT--TA-CCGT-AT--ATTT-------GAAATACG-CCA--------GGTCTAA-----T-------A---------A-----CC--------------A-----C-G--C-T-ATAC--CGC---AG-A-T---TA--A------T---AT-ATAGT-AAAATGATTCTAT----TA-TT---ATGTGGGTT-AGTTG-TATTT-ATATG-CATATA--TAATA---CA----------GCCGTTTAC--TTCTTCCA-TG-TACAT-CAAAAAAGGAAAGCATCT-ATCT-AATT-CAT------TTTTGAAAATTCAGTG-CAGAACAAAA---TTATTCT-GACAT-A-AAATATAG---T-A-ATCTA--TAATC---------------TTTGATACGAAAT---ACTAT--ACGGCCTATAGTGCTCT-CCGCATATTGTCT----AGATATCTTGAAGTTTTACTCGGGG-TTTAGGTC-AAAAGG-GCGGAAATGG-TAT-TCA-ACCT-GGGATAAAC-C-ATATCTCAACAT-ATTAATC-ATTT-G-AATCTGACCT--AT-ATGAA----TTTTTTTTAATGAAATAG-AATCA--TC--TT-TCAT-TGAT-T---T-TTTA-----TTTAATAATT--ATTC-----T--TCTT---ATCATAAAAGATAGATTATTAG-TTTTTAC-AC-TGTAC-TTGATACATAATTGTCGCTTCACCCTTTAGAGGCATTTA---GTAC------T-GTTATTGACACACC-------TT-C-ATTTGCGA-------ATAAAG--TG--A-GATACAGC--A-TACA-A-CTAAC--------TAGGC-CTTAT---------------CAT----CT----TGCTG-TTCT-TTG-----TAGTTA-TGTCT--G-C-TATGTTAT-ACATTTTACATTTATGCT-AA-AG-----TATTGTACTTG-AATGTACCGG-TA-----TT--GTCG--T--T---TG----T-G-----TACCCGCGGTTACGTA-C--C------GTACA-AGAA----A---G-AGT-A-CGGTACACCGC--GTATA
gi|11 : aGTTGTGTACCGCGAAGAAAAAACGTACCGCGGTA--TA-CCGTAAC--ATTT-------GAAAAATA-CCG------C-GGT---A-----T-------A--------TA-----CC--------------A-----C-G--G-T-ATAC--CGC---AGTATA---TACCACGGTGTT---TT-TTAGTA------------T----TA-TC---GTTT---TT-G--TG--ATTT-AT-TG-C--ATA--TAAT----CA----------GCTGTTAAT--TCCTCCAA-TG-TAAAT-AAGGAAGAGAAAGTATTTGATTTAAATT-C-------ATTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCTGAACATAACAA-TA-Acggcggtaataccggccacc
gi|9 : gaGTCGGGTACTGCTAAGAAAAAACGTACTGCAGTA--TA-CCGTAAA--ATTT-------GAAAAATA-CCA------T-GGT---A-----T-------ACACATGTATA-----CC--------------A-----C-A--G-T-ATAC--CAC---AG-ATT---TA--A------T---CT-TCAGTAAAA-TGATTCCAT----TA-TTATCGTTT---TT-AGTTGTGATTT-AT-TG-C--ATA--TAAT----CA----------GTCGTTTAT--TCCTCAAA-TG-TAAAT-AAGAAAGGGAAAGTATCTTATTTAAATT-CATTat
gi|1 : gaTTGGGTACCGCGAAGAAAAAACGTACCGCGGTA--TA-CCGTAAT--ATTT-------GAAAAATA-CCG------C-GGT---A-----T-------A--------TA-----CCCGGGGGTATATACCA-----C-G--G-T-ATAC--CGC---AG-ATT---TA--A------T---GA-TTAGTAGAT-TGACTCCAT----TA-TTATCGTTT---TT-AGTTGTGATTT-AT-TG-C--ATA--TAAT----CACTATTAATCAGCTGTTAAT--TCCTCCAA-TG-CAAAT-AAAAAAGAAAAAGTATTTGATTTAAATT--------GATTTTCTA---TCTGTGACAAAACTAAAG-TTTATTCTGAACAT-AAAAATA-AGTATATG-ATATA---AATCATACAGTACCAATTTTT--ATAC-A-ATA--CTTATGTACAGC----AGTG-TCT-CCGCATCTTTTCA----ACATGC----AAGTTTTACTCGGGG-TTT--GTCT-AATTG-GCGTAAATGG-CAT-TTG-ACCT-GGGT-AAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATATTAAATG--TTTTC-TTAATAAAACAG-AAT-A--TCA-TT-CCAA-TGAT-A---A-TTTA---ATTTTAATG--T--GTT------TTATTTT---ATCATTAATAATAAATTAATTG-TTTTTACATG-TGTAA-TTCATACGT--TTACC-CT--T------AGAGGC---TATT-GTGCT---GTT-ATTA--GACATACCTTTGAGTTT-C-A-TTACGATGGG---ATGAAGTATA--A-AATAGAGTGAGTCAC--AGCTCAC-------ACAGGTACTTATAT--------ATAGGCATATTATT----TG-TGTTTTTCTCGATATTTAA-TA-T-TTT--TGC-TTTGTT-T-AAATTTTACA-TTTTGCT-AAGAG-T---TATTGGACTTG-AATGTACC-G-TAT----TT--GGC---T--T---TG----T-G-----TA-CCGCGA-TACGTA-C--C--A---GT-CA-A-AA----A---A-AGTAACCGGTATA---C--ttgtgatattttttatatttatatttttcctttatttaaattttacaatctttttaagagttattgtcgatatttggctttgtgtaccacggtacgtaccagtacaagaaaaatactggtaataccgtgcacctctactcaatt
gi|5 : TTGGGTACCGCGAAGAAAAAAT--ACCGTGGTA--TA-CCGTAAT--AGTT-------GAAAAATA-CCG------C-GGT---A-----C-------A--------TA-----CC--------------A-----C-G--G-T-ATAC--CGC---AG-ATT---TA--A------T---CT-TTAGC-AAAACGATTCCAT----TA-TTATCGTTT---TT-AGTTGTGATTT-AT-TG-C--ATATGTAAT----CA----------GCTGTTAAT--TCCACCAA-TG-TAAATAAAAAGAGAGAAAGTATTTTATTTAAATT-C-------ATTTTGAAA--TCTGTGACAGAACTAAAG-TTT--------------AAATA-AG--------TATA--AAATC---------------TT--ATACAATATGGTACTAT--ACAGC----AGTG---T-CTGCATTTTGTCT----AAACTT----AAGTTTTACTCGGGG-TTT--GTCT-AATTG-GCGCAAATGG-CAT-TTG-ACCT-GGGT-AAAC-C-AT---TCAACAT-G--AAAT-ATTT-ATAATCT-ACAT-GATATTAAATG--TTTTC-TTAATAAAATAG-AAT-A--TTTATT-CCAT-TGAT-A---A-TTTA---A-TTTGATG--T--GTT------T--TCTT---ATC--------------AATTG-TTTTTACATA-TGTAA-TTCATATGT--TTACC-CT--T------AGAGGC---TATT-GTACTGTAA-T-ATTA--AACATACCTTTGAGTTT-C-A-TTACAATGGG---ATGAAGTATA--A-AATAAAGTGAGTCAC--AGCGTACATATACTATAGGTACTTATAGGCCTAGATATATGCCTATTATTTAACTG-TGTTTCTCTTGATATTTAATTA-T-TTT--TGC-TTTGTT-T-ATATTTTACATTTTTGCT-AGGAGTTTAATATTGGACTTG-AATGTAGCGG-TAT----TT--GGC---T--T---TG----T-G-----TA-CCGCAG-TACGTA-C--C--A---GTACT-A-GA----A---A-AGT-ACCGGTAcggtaataccgcgc
gi|7 : TTGGGTACCGCGAAGAAAAAACGCACCGTGGTA--TA-CCGTAAT--ATTT-------GAAAAATA-CCG------C-GGT---A-----T-------A--------TA-----CC--------------A-----A-G--G-T-ATAC--AGC---AG-ATT---TA--A------T---CT-TTAGC-AAAACGATTCCATGATGTA-TC---GTTT---TTCAGTTGATATTT-AC-TG-C--ATA--TATT----CA----------GCGGTTTTT--TCCTCCAA-TG-TAAAT-AAAAAAGGGAAAAAATCTTATTTAAATT-C-------ATTTTGAAA--TCAGTGA-AGAACAAAAG-TTTATTCTGAACAT-AAAAATA-AG---------ATA--TAATC---------------TTA-ATAC--TATA----TAT--ACAGT----AGTG-TCT-CCTCATCTT----------ACG---------------CGGGG-TTT--GAAT-AATTG-GCGGAAATGG-TAT-TAG-ACCT-GGGT-AAAT-C-AT---TAAACAT-A--AAAT-ATTT-AAAATCT-ATCT-GATATTAAATG--CATTC-TTAATGAATTAG-AAT-AT-TT--TT-CCAT-TGAC-ATTTT-TTTT---ATTTTGATA--T--GTT------T--TCTTATAATCATAAATAATAAATTCATTC-TTTTCACACA-TGTAC-TTCATACAT--TCACC-CT--T------AGAGataccgcgcacc
gi|15 : TTGGGTACCGCGAAGAAAAAACGTACCGCGGTA--TAGCCGTGAT--ATTT-------GAAAAATACCCG------C-GGT---A-----T-------AT-------TA-----CC--------------A-----CGG--G-T-ATAC--CGC---AG-ATT---TA--A----------TC-TAAGT-AAAACGATTCCAT----TA-TT---AT
gi|17 : GAAGAAAAAACGTACCGCGGTA--TA-CCACAAT--ATTT-------GAAAAATA-CCA------C-GGT---A-----C-------A--------TA-----CC--------------A-----T-GTAG-T-ATTC--CGC---AG-ATT---TA--A------T---CT-TTAGT-AAAACGATTcgt
gi|6 : cgtGTACCGCGGTACGTA-CC--AGT--ACAA-------GAAAAGTA-CC----------GT---A-----C-------A--------T----------------------------C-G--G-T-ATAC--CG
gi|10 : ggaagtattgatttaaattcattttcaaatcttgacagaactaaagtttattctgaacataaaataagtatataatttatacaatactatacagcatgtctccgcatctaagttttactcggggtttgtctaattggcgtaaatggcatttgacctgggtaaaccattcaacataaatatttataatctacatgatattaaatggttcttaataaaatagtatatctttccattgataatttaattttgatgtgttttctatcataaataataaattaattgtttttattatatgtaattcatacgtttacccctagaggctattgtactgttattagacatacctttcagtttccattacgatgggatatgaagtataaataaagtgagtcacagcgtacataggtacttatagataggcctattattcagtttctcttgatatttaattatttttgctttgtttaaatctaacatttttgctaagagttattggacttggaatgtaccggtatttgggtttgtgtGTACCGCGGTACGTA-CCAT--T--ACAA-------GAAAAGTA-CTGGTACACC-GGT---A-----T-------A--------TA-----C---------------------C-G--G-TAATAC--CGC---Agtaataccgtgcaact
gi|11 : gctttaacgtactgtaattcatacgtttacccttagaggctattgtactgttattagacatacctttgagtttcattacgatgggatgaagtatacaataaagtgagtcactgcttacataggtacttatatataggcatattatttgtgtttctcttgatatttaattacttttgctttgtttaaattttacatttttgctaagagttattggacttgaatgtaccggtatttggctttgtACTGCGGTA--TA-CCGTGGT--AT--------------ATA-CCG------C-GGT---A-----TTTTTCAAA--------TG-----TT--------------A-----C-G--G-T-ATAC--CGC---GG-cacctc
gi|1 : gagttgtgtaccgcgaagaaaaaacgtaCTGCGGTA--TA-CCGTGGT--ATATACCCCCGGGTATATA-CCG------C-GGT---A-----TTTTTCAAA--------TA-----TT--------------A-----C-G--G-T-ATAC--CGC---GG-atataccacggtgttttttagtattatcgtttttgtgatttattgcatataatcagctgttaattcctccaatgtaaataaggaagagaaagtatttgatttaaattcattttcaaatctgtgacagaactaaagtttattctgaacataacaataaat
gi|5 : ttgggtaccgcgaagaaaaaacgtaCTGCGGTA--TA-CCGTGGT--AT--------------GTA-CCG------C-GGT---ATTTTTC-------AAC------TA-----TT--------------A-----C-G--G-T-ATAC--CAC---GGTATT---Tatttaatgattagtagattgactccattattatcgtttttagttgtgatttattgcatataatcactattaatcagctgttaattcctccaatgcaaataaaaaagaaaaagtatttgatttaaattgattttctatctgtgacaaaactaaagtttattctgaacataaaaataagtatatgatataaatcatacagtaccaatttttatacaatacttatgtacagcagtgtctccgcatcttttcaacatgcaagttttactcggggtttgtctaattggcgtaaatggcatttgacctgggtaaaccattcaacataaaatatttataatctacatgatattaaatgttttcttaataaaacagaatatcattccaatgataatttaattttaatgtgttttattttatcattaataataaattaattgtttttacatgtgtaattcatacgtttacccttagaggctattgtgctgttattagacatacctttgagtttcattacgatgggatgaagtataaaatagagtgagtcacagctcacacaggtacttatatataggcatattatttgtgtttttctcgatatttaatatttttgctttgtttaaattttacattttgctaagagttattggacttgaatgtaccgtatttggctttgtgtaccgcgatacgtaccagtcaaaaaaagtaaccggtataccggtaataccgcgc
gi|8 : ttgggtaccgcgaagaaaCTGCGGTA--TA-CTGTGGT--AT--------------GTA-CCG------C-GGT---A-----TTTTTCAAA--------TA-----TT--------------A-----C-G--G-T-ATAC--CGC---GG-atttaatctttagcaaaacgattccattattatcgtttttagttgtgatttattgcatatgtaatcagctgttaattccaccaatgtaaataaaaagagagaaagtattttatttaaattcattttgaaatctgtgacagaactaaagtttaaataagtataaaatcttatacaatatggtactatacagcagtgtctgcattttgtctaaacttaagttttactcggggtttgtctaattggcgcaaatggcatttgacctgggtaaaccattcaacatgaaatatttataatctacatgatattaaatgttttcttaataaaatagaatatttattccattgataatttaatttgatgtgttttcttatcaattgtttttacatatgtaattcatatgtttacccttagaggctattgtactgtaatattaaacatacctttgagtttcattacaatgggatgaagtataaaataaagtgagtcacagcgtacatatactataggtacttataggcctagatatatgcctattatttaactgtgtttctcttgatatttaattatttttgctttgtttatattttacatttttgctaggagtttaatattggacttgaatgtagcggtatttggctttgtgtaccgcagtacgtaccagtactagaaaagtaccggtaataccgcgcacc
gi|7 : agtttggtaccacgaagaaaaaacgtaCTGCTGTA--TA-CCTTGGT--AT--------------ATA-CCG------C-GGT---A-----TTTTTCAAA--------TA-----TT--------------A-----C-G--G-T-ATAC--CAC---GG-atttaattttcagtaaaaacgattccattattatcgtttttagttgtgatttattgcatataatcaactgttaattcctcctatgtaaataaaagagagaaagtatatttaagttcatcttcaaatctgtgacagaactaaagttttatgcgaacataaaataaaagaatatatttaatcttatacaagtactatacagcaggtctcccgcatcttgctgtaaacacgcagttttactcgggcgtttgtctaatgtgcgtaaatggcatcttgcacctggggaaaccaatatcaaaataaaataatttataatctacttcgataataagttttttctttaaaaatttgaataatcttccatcgataaattgaattttgatgtttttttttatttttatcataaa
gi|15 : ttgggtaccgcgaagaaaaaacgcaCTGCGGTA--TACCCGTGGT---------------AATATA-CCG------CGGGT---A-----TTTTTCAAA--------TA-----TC--------------A-----C-G--GCT-ATAC--CGC---GG-atttaatctttagcaaaacgattccatgatgtatcgtttttcagttgatatttactgcatatattcagcggttttttcctccaatgtaaataaaaaagggaaaaaatcttatttaaattcattttgaaatcagtgaagaacaaaagtttattctgaacataaaaataagatataatcttaatactatatatacagtagtgtctcctcatcttacgcggggtttgaataattggcggaaatggtattagacctgggtaaatcattaaacataaaatatttaaaatctatctgatattaaatgcattcttaatgaattagaatatttttccattgacattttttttattttgatatgttttcttataatcataaataataaattcattcttttcacacatgtacttcatacattcacccttagag
gi|20 : ttgggtaccgcgaagaaaaaacgta--TA-TCGTGTT--ATTT-------GCAAATTA-CTG------G-AGT---A-----T-------A--------TA-----AC--------------A-----C-G--G-T-ATAC--CAC---AG-ATT---TA--G------T---AT-Tatttaatctaagtaaaacgattccattattatcgt
gi|6 : agctgcgttatctgaaaaaaaaaaagTA-CCG------C-GGT---A-----C-------A--------CACAAACCC--------------AAATACC-G--G-T-ACAT--TCC---AA-GTCCAATA--A------C---TC-TTAGCAAAAATGatca
gi|10 : ggaagtattgatttaaattcattttcaaatcttgacagaactaaagtttattctgaacataaaataagtatataatttatacaatactatacagcatgtctccgcatctaagttttactcggggtttgtctaattggcgtaaatggcatttgacctgggtaaaccattcaacataaatatttataatctacatgatattaaatggttcttaataaaatagtatatctttccattgataatttaattttgatgtgttttctatcataaataataaattaattgtttttattatatgtaattcatacgtttacccctagaggctattgtactgttattagacatacctttcagtttccattacgatgggatatgaagtataaataaagtgagtcacagcgtacataggtacttatagataggcctattattcagtttctcttgatatttaattatttttgctttgtttaaatctaaTA-CCG------C-GGT---A-----C-------A--------CAAAG--CC--------------AAATACC-G--G-T-ACAT--T-C---AA-GTC---CA--A------TAACTC-TTAGCAAAAATGcgtaccagtacaagaaaagtaccgtacatcggtataccggtaataccgtgcaact
gi|13 : gctttaacgtactgtaattcatacgtttacccttagaggctattgtactgttattagacatacctttgagtttcattacgatgggatgaagtatacaataaagtgagtcactgcttacataggtacttatatataggcatattatttgtgtttctcttgatatttaattacttttgctttgtttaaatttta-----C-------A--------TA-----CC--------------A-----T-G--G-T-ATAC--CGC---AG-ATT---TA--A------T---CT-TTGGT-ACAATGATTCTAT----TA-TTATCGTTT---GT-AGCTGTAATTT-AT-TG-C--ATA--TAATCATGCA----------GCCGTGTAT--TCCTCCAT-TG-TAAAT-AAAA-AGGGAAAGTATCTTATTTAAcgtaccattacaagaaaagtactggtacaccggtatataccggtaataccgcacacctc
gi|21 : --------TA-----TC--------------A-----C-G--G-TTATAT--CGCCTGAG-ATT---CA--A------T---TT---------AAC----TCAT----TAATC---ATTT---TT-AGTTGGCATTT-AT-TG----ATAT-TAAC----CA----------GCTGT
gi|24 : T----TA-TC---GTTT---TT-AGTTGTGATTT-AT-TG-C--CT---TAAT----TA----------GCTGTTAAT--TCCTCCAAGTG-TAAA
gi|6 : GAA-GTATT-GATTTAAATT-CATT-------TTCAAA--TCT-TGACAGAACTAAAG-TTTATTCTGAACAT-A-AAATA-AG--------TATA--TAAT----------------TT--ATAC-A-ATA---CTAT--ACAGC----A-TG-TCT-CCGCATCT-------------------AAGTTTTACTCGGGG-TTT--GTCTAA-TTG-GCGTAAATGG-CAT-TTG-ACCT-GGGT-AAAC-C-AT---TCAACAT----AAAT-ATTT-ATAATCT-ACAT-GATATTAAA-T--GGTTC-TTAATAAAATAG-TAT-A--TCT-TT-CCAT-TGAT-A---A-TTTA---ATTTTGATG--T--G-T------T--TTCT---ATCATAAATAATAAATTAATTGTTTTTATTATA-TGTAA-TTCATACGT--TTACC-CC--T------AGAGGC---TATT-GTACT---GTT-ATTA--GACATACCTTTCAGTTTCC-A-TTACGAT-GGGATATGAAG--TAT-A-AATAAAGTGAGTCAC--AGCGTAC-------ATAGGTACTTATAG--------ATAGGCCTATTATT----CA--GTTTCTCTTGATATTTAATTA-T-TTT--TGC-TTTGTT-T-AAATCTAACATTTTTGCT-AAGAG-T---TATTGGACTTGGAATGTACCGG-TAT----TT--GGG---T--TTG-TG----T-G-----TA-CCGCGG-TACGTA-C--C--A---GTACA-A-GA----A---A-AGT-ACC-GTACA---TCGGTAT-----ACCGG--TA----ATA---CCGTGCAACT
gi|19 : g-AACAT-AAAAGCA-AG--------TATA--TAATC---------------TT--ATAC-A----------------GC----AGTG-TCT---GCATCTTGTCT----ACACGT----AAGTTTTACTTGGGG-TTT--GTCT-ACTTG-GCGTAAAT-G-
gi|14 : GGG-TTT--GTCTAC-TTG-GTGGAAAT-GGTAT-TCG-ACCT-GGGT-AAAC-------------AT-A--AAAT-ATCT-ATAATAT-ATCT-GATGATAAT-A--TTTTCTT------AAT-----T--------------T-TGAT-A-----------------------T--GTT------T--TCTT---ATCATATATGATAAATTTATTG-TTTT
gi|23 : --TTTTCTT-AATGAAATAG-AAT-A--TC--TTTCCAA-TGAT-A---T-TTTTTTTATTTTGATA--T--GTT------T--TCTT---ATCATt
gi|26 : TG-TTTTTACCTG-TGTAA-TTCATACGT--TTACC-CT--T------AGAGG
gi|10 : G-CTTTAACGTACTGTAA-TTCATACGT--TTACC-CT--T------AGAGGC---TA-TTGTACT---G-TTATTA--GACATACCTTTGAGTTT-C-A-TTACGAT-GGG--ATGAAG--TAT-ACAATAAAGTGAGTCACT--GCTTAC-------ATAGGTACTTATAT--------ATAGGCATATTATT----TG-TGTTTCTCTTGATATTTAATTACT-TTT--G-C-TTTGTT-T-AAATTTTACATTTTTGCT-AAGAGTT----ATTGGACTTGAA-TGTACCGG-TAT----TT--GGC---T--T---TG----T-G-----TA-CCGCGG-TACGTA-C--C--A---TTACA-A-GA----A---A-AGT-ACTGGTACA---CCGGTATAT---ACCGG--TA----ATA---CCGCACACCTC
gi|12 : CATACCTTT-------C-A-TTACGAT-GG-----GAGG------A-AGTAAAGTGAGTCACA--GC---------------GTA-TTATAG--------ATAGGCGTACTATT----TG-TGATTATCTCGATATTTA-TT--T-TTTGAT-T-TTTTTT-T-AAATTAAATAATTCTATT-AAGAGTT----ATTGGACTTGAA-TATACCGG-TAT----TT--GTC---T--T---TG----A-G-----TA-CCGCGG-TACGTT-C--C--G---ATACA-A-GA----A---A-A-T-ACTGGTATA---C-------------CGGTA------ATA---CCGCGCATCTC
gi|9 : TT----TG-TGATATTTTTTATATTTA--TA-T-TTTT-C-C-TTTATT-T-AAATTTTACAATCTTTTT-AAGAGTT----ATTG-------------TCGA-TAT----TT--GGC---T--T---TG----T-G-----TA-CCACGG-TACGTA-C--C--A---GTACA-A-GA----A---A-AAT-ACTGGTA
gi|5 : gagtcgggtactgctaagaaaaaacgtactgcagtataccgtaaaatttgaaaaataccatggtatacacatgtataccacagtataccacagatttaatcttcagtaaaatgattccattattatcgtttttagttgtgatttattgcatataatcagtcgtttattcctcaaatgtaaataagaaagggaaagtatcttatttaaattcatTTTTGCT-AA-AG------ATTAAATCTGCGGTATACCG----------T--GG-----------TA----T-G-----TA-CCGCGG-TAataccgtgcacctctactcaatt
gi|16 : ttgggtaccgcgaagaaaaaataccgtggtataccgtaatagttgaaaaaTGTT-AAGAG-T---TATCAGACTTTGAATGTACTGG-TA----------------------TCA---T-G-----TA-TCACAG-TACATA-C--cgattccattattatcgtttttagttgtgatttattgcatatgtaatcagctgttaattccaccaatgtaaataaaaagagagaaagtattttatttaaattcattttgaaatctgtgacagaactaaagtttaaataagtataaaatcttatacaatatggtactatacagcagtgtctgcattttgtctaaacttaagttttactcggggtttgtctaattggcgcaaatggcatttgacctgggtaaaccattcaacatgaaatatttataatctacatgatattaaatgttttcttaataaaatagaatatttattccattgataatttaatttgatgtgttttcttatcaattgtttttacatatgtaattcatatgtttacccttagaggctattgtactgtaatattaaacatacctttgagtttcattacaatgggatgaagtataaaataaagtgagtcacagcgtacatatactataggtacttataggcctagatatatgcctattatttaactgtgtttctcttgatatttaattatttttgctttgtttatattttacatttttgctaggagtttaatattggacttgaatgtagcggtatttggctttgtgtaccgcagtacgtaccagtactagaaaagtaccggtaataccgcgcacc
gi|18 : CT-AAGAGTT----ATTGGACTTGAA-TATACCGG-TAT----TT--GGT---T--T---TG----T-G-----TA-CCGCGG-TACGAA-T--C--A---GAACT-A-GA----A---A-AGT-ACCGGTATA---C--atgtaacaggttggggcacagaaattttggaaatatactggcataacaataataccgcacacc
gi|22 : AGTATACCCG-TAC----TT--------T--T---TT----T-G-----TA-CTG--G-TACGTA-C--CGTG---GTACA-G-AA----A---cggtaatgccacacac
gi|10 : cATATACCGG-TGTACCAGT--ACT---T--T---TCT---T-G-----TA---ATGG-TACGTA-CCGC--G---GTACA-C-AA----AGCCA-AAT-ACCGGTACA------------TTCA--AGTCCA----ATAAgattatactgcgcacatc
gi|1 : gctttaacgtactgtaattcatacgtttacccttagaggctattgtactgttattagacatacctttgagtttcattacgatgggatgaagtatacaataaagtgagtcactgcttacataggtacttatatataggcatattatttgtgtttctcttgatatttaattacttttgctttgtttaaattttacatttttgctaagagTATACCGGTTAC----TT--------T--T---TT----T-G------A-C--TGG-TACGTA-TCGC--G---GTACA-C-AA----AGCCA-AAT-A-CGGTACA------------TTCA--AGTCCA----ATAAaccggtaataccgcacacctc
gi|3 : ttgggtaccgcgaagaaaaaacgtaccgcggtataccgtaatatttgaaaaataccgcggtatatacccgggggtatataccacggtataccgcagatttaatgattagtagattgactccattattatcgtttttagttgtgatttattgcatataatcactattaatcagctgttaattcctccaatgcaaataaaaaagaaaaagtatttgatttaaattgattttctatctgtgacaaaactaaagtttattctgaacataaaaataagtatatgatataaatcatacagtaccaatttttatacaatacttatgtacagcagtgtctccgcatcttttcaacatgcaagttttactcggggtttgtctaattggcgtaaatggcatttgacctgggtaaaccattcaacataaaatatttataatctacatgatattaaatgttttcttaataaaacagaatatcattccaatgataatttaattttaatgtgttttattttatcattaataataaattaattgtttttacatgtgtaattcatacgtttacccttagaggctattgtgctgttattagacatacctttgagtttcattacgatgggatgaagtataaaatagagtgagtcacagctcacacaggtacttatatataggcatattatttgtgtttttctcgatatttaatatttttgctttgtttaaattttacattttgctaagagTGTACCGG-TAC----TT-----------T---TT----T-G-----TA-CTTGGG-TACG-A-C--C--GCG-GTACA-G-AAGCCCA---A-AAT-ACCGGTACA---ccggtaataccgcgc
gi|6 : gttggtacggcgaagaaaaagcgtaccgcggtaataccggatgaatttgaaaaataccgcggtacatacccggtatataacgcagatttaatttcttagtaattatcgtttttgcttgttatttcattggcatataatcaactgttaataatcctccaaatggtaaataaaagagagaaactatttaatttaaatttcatctttcaaatcgtgacagaaccaaagtttattctgaacataaaaataattatataatcttatacgaaatactatacagcagtctctgcactatgtctacacgcaagttttactcggggtttgcttaattggcgtaaatgcctttgacctgggggaaacacattcaacatgaaaatatttaaaaatctacatgataataaatggtttttctttaaaaatagaaatagcttttccatctgataattttaattttgatgtgggttttttttttttttatatgtaagttcatacgtttgcccttagaggctattgtactgttatatacatatatttgagtttcaattacgatgggatgaagtaataaaaaaagtgagtcacacagcttacataggtacttatatataggcatatatttgtgtttctcttgatatttaattattttccttttgtttaaaatttaacatttttgctaaagagcttttggacttgaaTATACCGA-TGT----AC--GGTACTT--T---TC----TTG-----TA-CTG--G-TACGTA-CCGC--G---GTACACACAA----ACCCA-AAT-ACCGGTAC-----------ATTCCA--AGTCCA----ATAAaaatatccggtatacccggtaataccgcgcacctc
gi|4 : ggaagtattgatttaaattcattttcaaatcttgacagaactaaagtttattctgaacataaaataagtatataatttatacaatactatacagcatgtctccgcatctaagttttactcggggtttgtctaattggcgtaaatggcatttgacctgggtaaaccattcaacataaatatttataatctacatgatattaaatggttcttaataaaatagtatatctttccattgataatttaattttgatgtgttttctatcataaataataaattaattgtttttattatatgtaattcatacgtttacccctagaggctattgtactgttattagacatacctttcagtttccattacgatgggatatgaagtataaataaagtgagtcacagcgtacataggtacttatagataggcctattattcagtttctcttgatatttaattatttttgctttgtttaaatctaacatttttgctaagagTGTACCG--TAC----T-----C---T--T---TC----TTG-----TA-C---GG-TACGTAAC--C--GCGGGTACA-C-AA----ACG-ACAAT-ACCGGTACA------------TTCA--AGTACA----ATAccggtaataccgtgcaact
gi|12 : agttgggtaccgcgaagacacaacgtagcggtttaccgtatatttgaaatacgccaggtctaataaccacgctataccgcagattaatatatagtaaaatgattctattattatgtgggttagttgtatttatatgcatatataatacagccgtttacttcttccatgtacatcaaaaaaggaaagcatctatctaattcatttttgaaaattcagtgcagaacaaaattattctgacataaaatatagtaatctataatctttgatacgaaatactatacggcctatagtgctctccgcatattgtctagatatcttgaagttttactcggggtttaggtcaaaagggcggaaatggtattcaacctgggataaaccatatctcaacatattaatcatttgaatctgacctatatgaattttttttaatgaaatagaatcatctttcattgattttttatttaataattattcttcttatcataaaagatagattattagtttttacactgtacttgatacataattgtcgcttcaccctttagaggcatttagtactgttattgacacaccttcatttgcgaataaagtgagatacagcatacaactaactaggccttatcatcttgctgttctttgtagttatgtctgctatgttatacattttacatttatgctaaagTATACCAG-TAT----TT--T-C---T--TGTATCGGAAC-G-----TA-CCGCGG-TAC----T--C--A-------A-A-GA----C---A-AAT-ACCGGTATA------------TTCA--AGTCCA----ATAAccgcgtatacggcggtaataccggccacc
gi|18 : catacctttcattacgatgggaggaagtaaagtgagtcacagcgtattatagataggcgtactatttgtgattatctcgatatttattttttgatttttttttaaattaaataattctattaagagTATACCGG-TAC----TT--TTC---TAGT---TC----T-GATTCGTA-CCGCGG-TAC----------------ACA-A-AAC---C---A-AAT-ACCGGTATA------------TTCA--AGTCCA----ATAAccggtaataccgcgcatctc
gi|5 : ctaagagTACCGG-TAC----T---------T--T---TC----TAG-----TA-C--TGG-TACGTA-CTGC--G---GTACA-C-AA----AGCCA-AAT-ACCGCTACA---ccggtaatgccacacac
gi|9 : ttgggtaccgcgaagaaaaaataccgtggtataccgtaatagttgaaaaataccgcggtacataccacggtataccgcagatttaatctttagcaaaacgattccattattatcgtttttagttgtgatttattgcatatgtaatcagctgttaattccaccaatgtaaataaaaagagagaaagtattttatttaaattcattttgaaatctgtgacagaactaaagtttaaataagtataaaatcttatacaatatggtactatacagcagtgtctgcattttgtctaaacttaagttttactcggggtttgtctaattggcgcaaatggcatttgacctgggtaaaccattcaacatgaaatatttataatctacatgatattaaatgttttcttaataaaatagaatatttattccattgataatttaatttgatgtgttttcttatcaattgtttttacatatgtaattcatatgtttacccttagaggctattgtactgtaatattaaacatacctttgagtttcattacaatgggatgaagtataaaataaagtgagtcacagcgtacatatactataggtacttataggcctagatatatgcctattatttaactgtgtttctcttgatatttaattatttttgctttgtttatattttacatttttgctaggagtttaatattggacttgaaTACCAG-TAT----TT--------T--T---CT----T-G-----TA-CTG--G-TACGTA-C--CGTG---GTACA-C-AA----AGCCA-AAT-ATCGataccgcgcacc
gi|22 : gagtcgggtactgctaagaaaaaacgtactgcagtataccgtaaaatttgaaaaataccatggtatacacatgtataccacagtataccacagatttaatcttcagtaaaatgattccattattatcgtttttagttgtgatttattgcatataatcagtcgtttattcctcaaatgtaaataagaaagggaaagtatcttatttaaattcattttgtgatattttttatatttatatttttcctttatttaaattttacaatctttttaagagttattgtC---T--T---TC----T-G-----TA-CCACGG-TACGTA-C--C--A---GTACA-A-AA----A---A-AGT-ACGGGTATA---C--ataccgtgcacctctactcaatt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|25 ): TCTACACACTTAGTCATTTTGTTTTAGAGTCTATCTGTAA
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 33333333333333 11111 1111 1111111111 33333333 3333 2222222222222222 11 222222222222 11111 111 111 1 11111111 11111 111111 11111 22222 1 111111 222 1111111 11111111 111111 111 3333333333333333333333333333
lowQualScore : 3 3 4 44 3 555 00000000000000 2 33 2 33 555 2 2 22222 6666 3 3 3 3 3 3 3 77 44 0000 4444444444 2 0 55 3 3 3 4 6 5 4 44444444 3 66 2 4 8 55 4 0000 4 66 9999999999999999 00 777777777777 66 9999 1 4 55 22 9999 1 33333 4 55 444 4 4 3 4 4 4 4 4 222 4 66 4 4 2 4 1 4 1 55 3 11 4 11111111 8 4 4 22222 777 66666 555555 55 777 11 0 5 4 4 4 9999 11111 4 4 77 33333 2 0 66 888888 5 0 777 6 6666666 2 88888888 5 66 9999 55 9999 4 4 2 2 3 888888 7 3 55 3 44 1 3 3 222 0 3 3 6666 3333333333333333333333333333 5
lowQualScore : . . . .. . ... .............. . .. . .. ... . . ..... .... . . . . . . . .. .. .... .......... . . .. . . . . . . . ........ . .. . . . .. . .... . .. ................ .. ............ .. .... . . .. .. .... . ..... . .. ... . . . . . . . . ... . .. . . . . . . . .. . .. . ........ . . . ..... ... ..... ...... .. ... .. . . . . . .... ..... . . .. ..... . . .. ...... . . ... . ....... . ........ . .. .... .. .... . . . . . ...... . . .. . .. . . . ... . . . .... ............................ .
lowQualScore : 6 3 8 66 3 888 00000000000000 9 99 9 99 000 9 9 44444 5555 1 3 3 8 3 3 3 99 66 4444 6666666666 8 5 00 6 6 6 0 4 8 0 44444444 9 11 2 4 0 55 0 4444 4 11 4444444444444444 66 444444444444 11 4444 1 4 66 99 4444 1 11111 0 55 777 0 4 4 4 4 4 4 4 222 4 11 4 4 2 4 0 4 0 55 0 33 0 11111111 0 0 0 22222 000 99999 555555 55 000 00 2 3 4 4 4 4444 11111 4 4 99 99999 5 0 99 666666 0 4 000 4 2222222 0 11111111 9 99 4444 33 7777 4 4 6 2 6 555555 3 6 00 3 66 0 3 3 666 2 6 6 7777 8888888888888888888888888888 0
consensus : GTTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATCT-TTAGTAAAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------GCTGTTAAT--TCCTCC-AA-T-GTAAATAAAAA-AGAGAAAGTATCTNATTTAAA-TTCAT-----ATTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCTGAACATAAAA-ATA--A-G---AT-ATA--TAA----------------TCTT--ATAC--A-ATA----ACTAT--ACAGC----AGTG-TCT-CCGCATCTTGTCT----ACACGC----AAGTTTTACTCGGG-GTTT--GTCTAAATTG-GCGTAAATGGCAT-TCG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATANTAAATG--TTTTCTTTAATAAAATAG-AAT-A--TC--TT-CCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------T--TCTT---ATCATAAATAATAAATTAATTGTTTTTAC-ATA-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTACTGT--T-ATTAGACATACCTTTGAGTTTC-ATTACGATGGGAT--GAAG--TA--A-AATAAAGTGAGTCACA-AGCTTAC-------ATAGGTACTTAT--------ATATAGGCN-TATTATT----TGTGTTTCTCTTGATATTTAATTATTTTTG--CTTTGTT-T-AAATTTNACATTTTTGCT-AAGAGTT---TATTGGACTT-G-AATGTACCGGTATTT--GGC-TT--TGTGTA-CCGCGG-TACGTACC--AGTACAA-GAAAAGT-ACCGGTAC---AC-----------CGGTATA--CCAATAATA-CCGCGCACCTC
Reference ( family-281 ) : GTTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTGAT--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATCT-TTAGTAAAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------GCCGTTAAT--TCCTCC-AA-T-GTAAATAAAAA-AGGGAAAGTATCTNATTTAAA-TTCAT-----ATTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCTGAACATAAAA-ATA--A-G---AT-ATA--TAA----------------TCTT--ATAC--A-ATA----ACTAT--ACAGC----AGTG-TCT-CCGCATCTTGTCT----ACACGC----AAGTTTTACTCGGG-GTTT--GTCTAAATTG-GCGTAAATGGCAT-TCG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACNT-GATANTAAATG--TTTTCTTTAATAAAATAG-AAT-A--TC--TT-CCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------T--TCTT---ATCATAAATAATAAATTAATTGTTTTNAC-ATA-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTACTG---T-ATTAGACATACCTTTGAGTTTC-ATTACGATGGGAT--GAAG--TA--A-AATAAAGTGAGTCACA-AGCTTAC-------ATAGGTACTTAT--------ANATAGGCA-TATTATT----TGTGTTTCTCTTGATATTTAATTATTTTCG--CTTTGTT-T-AAATTTTACATTTTTGCT-AAGAGTT---TATTGGACTT-G-AATGTACCGGTATTT--GGC-TT--TNTGTA-CCGCGG-TACGTACC--GGTACAA-AAAAAGT-ACCGGTAC---AC------TTCA-CAGT-----CCAATA--A-CCGCGCACCTC
gi|1 : TTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ATATACCCGGGGGTATATACCAC-G--GT-ATAC--CGC---AG-ATTTAATGA-TTAGTAGAT-TGAC----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CACTATTAATCAGCTGTTAAT--TCCTCC-AA-T-GCAAATAAAAA-AGAAAAAGTATTTGATTTAAA-TTGAT-----TTTCT---A--TCTGTGACAAAACTAAAG-TTTATTCTGAACATAAAA-ATA--A-GTATATGATA--TAAATCATACAGTACCAATTTTT--ATAC--A-ATA----CTTATGTACAGC----AGTG-TCT-CCGCATCTTTTCA----ACATGC----AAGTTTTACTCGGG-GTTT--GTCTAA-TTG-GCGTAAATGGCAT-TTG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATATTAAATG--TTTTC-TTAATAAAACAG-AAT-A--TCA-TT-CCAA-TGAT-A---A-TTTA---ATTTTAATG--T--GTT------TTATTTT---ATCATTAATAATAAATTAATTGTTTTTAC-ATG-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTGCTGT--T-ATTAGACATACCTTTGAGTTTC-ATTACGATGGGAT--GAAGTATA--A-AATAGAGTGAGTCAC--AGCTCAC-------ACAGGTACTTAT--------ATATAGGCA-TATTATT----TGTGTTTTTCTCGATATTTAA-TATTTTTG--CTTTGTT-T-AAATTTTACA-TTTTGCT-AAGAG-T---TATTGGACTT-G-AATGTACC-GTATTT--GGC-TT--TGTGTA-CCGCGA-TACGTACC--AGT-CAA-AAAAAGTAACCGGTAT---AC-----------CGGT-------AAT---A-CCGCGC
gi|10 : GCTTTAAC-GTACTGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTACTG---TTATTAGACATACCTTTGAGTTTC-ATTACGATGGGAT--GAAG--TAT-ACAATAAAGTGAGTCACT--GCTTAC-------ATAGGTACTTAT--------ATATAGGCA-TATTATT----TGTGTTTCTCTTGATATTTAATTACTTTTG--CTTTGTT-T-AAATTTTACATTTTTGCT-AAGAG-T---TATTGGACTT-G-AATGTACCGGTATTT--GGC-TT--TGTGTA-CCGCGG-TACGTACC--ATTACAA-GAAAAGT-ACTGGTAC---AC-----------CGGTATATACCGGTAATA-CCGCACACCTC
gi|11 : GTTGTGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAC--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAC-G--GT-ATAC--CGC---AGTATATA--CC----------ACGGTGTTTTTTAGTAT-TATCGTTT-TT-----GTGATTT-AT-T-GCATA--TA--AT----CA----------GCTGTTAAT--TCCTCC-AA-T-GTAAATAAGGA-AGAGAAAGTATTTGATTTAAA-TTC-------ATTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCTGAACATAACA-ATA--A-
gi|12 : gaCATACCTTT------C-ATTACGATGGGAG--GAAG--TA--A-A-----GTGAGTCACA--GC---------------GTA-TTAT--------AGATAGGCG-TACTATT----TGTGATTATCTCGATATTTA--T-TTTTTGATTTTTTTT-T-AAATTAAATAATTCTATT-AAGAGTT----ATTGGACTT-G-AATATACCGGTATTT--GTC-TT--TGAGTA-CCGCGG-TACGTTCC--GATACAA-GAAAA-T-ACTGGTAT---AC-----------CGGT-------AAT---A-CCGCGCATCTCat
gi|13 : A--------------TACCAT-G--GT-ATAC--CGC---AG-ATTTAATCT-TTGGTACAA-TGAT----TCTATTAT-TATCGTTT-GT-AGCTGTAATTT-AT-T-GCATA--TA--ATCATGCA----------GCCGTGTAT--TCCTCC-AT-T-GTAAAT-AAAA-AGGGAAAGTATCTTATTTAA
gi|14 : cGG-GTTT--GTCTAC-TTG-GTGGAAATGGTAT-TCG-ACCT-GGG-TA-------------AACAT-A--AAAT-ATCT-ATAATAT-ATCT-GATGAT-AATA--TTTTC-TTAAT--------------------------------------TTTG---AT----ATG------TT------T--TCTT---ATCATATATGATAAATTTATTGTTTT
gi|15 : TTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATAGCCGTGAT--ATTTGAAAAATACCCGCGGT---ATAT-------------TACCACGG--GT-ATAC--CGC---AG-ATTTAATC--TAAGT-AAAACGAT----TCCATTAT-TATCGTt
gi|16 : TGTT-AAGAGTT----ATCAGACTTTG-AATGTACTGGTA----------T--CATGTA-TCACAG-TACATAC
gi|17 : CGTGAAGAAAAAACGTACCGCGGT-ATA-CCACAAT--ATTTGAAAAATA-CCACGGT---ACA--------------TACCAT-GTAGT-ATTC--CGC---AG-ATTTAATCT-TTAGT-AAAACGAT----Tatgtaacaggttggggcacagaaattttggaaatatactggcataacaataataccgcacacc
gi|18 : CT-AAGAGTT----ATTGGACTT-G-AATATACCGGTATTT--GGT-TT--TGTGTA-CCGCGG-TACGAATC--AGAACTA-GAAAAGT-ACCGGTAT---AC------
gi|19 : AACATAAAA-GCA--A-G----T-ATA--TAA----------------TCTT--ATAC--A------------------GC----AGTG-TCT---GCATCTTGTCT----ACACGT----AAGTTTTACTTGGG-GTTT--GTCT-ACTTG-GCGTAAATGcggtaatgccacacac
gi|2 : GTTGGGTACCACGAAGAAAAAACGCACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ACA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATTT-TTAGCAAAAACGAT----TCCATTAT-T---GTTT-TT-AGTTGCTATTT-AT-T-GCATA--TA--AT----CA----------ACTGTTAAT--TCCTCC-AA-T-GTAAATAAAAG-AGAGAACGTATTTAATTTAAA-TTCATTAATGATTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCT-AACATACAA-GTAAGA-G---AT-ATA--TAA----------------TCTT--ATAC--ATATA----ACTAT--ACAGC----AGTG-TCT-CTGCATCTTGTCT----ACACGC----AAGTTTTACTCGGG-TTTT--GTCTAAATTG-GCGTAAAT-GCAT-TTG-ACCT-GGG-GAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATAATAAA-G--TTTTCTTTAAAAAAATAG-AAT-A--TC--TT-CCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------T--TTTT---ATCATAAATAAGAAATTAATTGTTTTAAC-GGA-TGTAA-TT----CATA-----CG-TTTGTCC-TAAGAGGCTA-T--GTAC-G---T-ATTAGACATACCTTTGAGTTTC-ATTACGAT-GGAT--GAAG--TA--A-AATAAAGTGAG-CACA-AGCTTAC-------ATAGGTACTTAT--------A-ATAGGCA-TATTATT----TGTGTTTCTCTTGATATTTAATTATTTTC---CTTTGTT-T-AAATTTAACATTTTTGCT-AAGAGTT---TATTGAGCTT-GAAATATACCGGTATTT--GGC-TT--TCTGTA-CCGCGG-TACGTACC--AGTACAA-AAAAAGT-ACCGGTAC---ACGTATATTTCACCAGT-----ATAATA--ATCCGTGCATCTC
gi|20 : TA-TCGTGTT--ATTTGCAAATTA-CTGGAGT---ATA--------------TAACAC-G--GT-ATAC--CAC---AG-ATTTAGTAT-T
gi|21 : agctgcgttatctgaaaaaaaaaaag--------------TATCAC-G--GTTATAT--CGCCTGAG-ATTCAATTT---------AAC--------TCATTA---ATCATTT-TT-AGTTGGCATTT-AT-T-G-ATAT-TA--AC----CA----------GCTGTatca
gi|22 : C-TT--TCTGTA-CCACGG-TACGTACC--AGTACAA-AAAAAGT-ACGGGTAT---AC------T
gi|23 : --TTTTCTT-AATGAAATAG-AAT-A--TC--TTTCCAA-TGAT-A---T-TTTTTTTATTTTGATA--T--GTT------T--TCTT---ATCATgattatactgcgcacatc
gi|24 : T-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCCT---TA--AT----TA----------GCTGTTAAT--TCCTCC-AAGT-GTAAA
gi|26 : TGTTTTTAC-CTG-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGG
gi|3 : GTTGG-TACGGCGAAGAAAAAGCGTACCGCGGTAATA-CCG-GATGAATTTGAAAAATA-CCGCGGT---ACA--------------TACC-C-G--GT-ATATAACGC---AG-ATTTAATTTCTTAGTA------------------AT-TATCGTTT-TT-GCTTGTTATTTCAT-TGGCATA--TA--AT----CA----------ACTGTTAATAATCCTCCAAA-TGGTAAATAAAAG-AGAGAAACTATTTAATTTAAATTTCAT------CTTTCAAA--TC-GTGACAGAACCAAAG-TTTATTCTGAACATAAAA-ATA--A-T----T-ATA--TAA----------------TCTT--ATACGAA-AT-----ACTAT--ACAGC----A--G-TCT-CTGCACTATGTCT----ACACGC----AAGTTTTACTCGGG-GTTT--G-CTTAATTG-GCGTAAAT-GCCT-TTG-ACCTGGGG-GAAACAC-AT---TCAACATGA--AAAT-ATTTAAAAATCT-ACAT-GATAATAAATGGTTTTTCTTTA--AAAATAGAAAT-AGCTT--TT-CCATCTGAT-A---ATTTTA---ATTTTGATG--TGGGTT------T--TTTT----------------------TTTTTTT----ATA-TGTAAGTT----CATA-----CG-TTTGCCC-TTAGAGGCTATT--GTACTG---T-TATATACATATATTTGAGTTTCAATTACGATGGGAT--GAAG--TAATA-AAAAAAGTGAGTCACACAGCTTAC-------ATAGGTACTTAT--------ATATAGGCA-TA-TATT----TGTGTTTCTCTTGATATTTAATTATTTTCC--TTTTGTT-TAAAATTTAACATTTTTGCTAAAGAGCT---T-TTGGACTT-G-AATGTACCGGTATTTTGGGC--T--TCTGTA-CCGCGG-T-CGTACCCAAGTAC-A-AAAAAGT-ACCGGTACAAAAT------ATC--CGGTATAC-CCGGTAATA-CCGCGCACCTC
gi|4 : GTTGGGTACCGCGAAGACACAACGTA--GCGGT-TTA-CCGT-AT--ATTTGAAATACG-CCA-GGTCTAATA---------------ACCAC-G--CT-ATAC--CGC---AG-ATT-AATAT-ATAGTAAAA-TGAT----TCTATTAT-TAT-GTGGGTT-AGTTGT-ATTT-ATAT-GCATA--TATAATA---CA----------GCCGTTTAC--TTCTTC-CA-T-GTACATCAAAA-AAGGAAAGCATCT-ATCT-AA-TTCAT------TTTTGAAAATTCAGTG-CAGAACAAAA---TTATTCTG-ACATAAAATATA--GTA---AT-CTA--TAA----------------TCTTTGATACGAA-AT-----ACTAT--ACGGCCTATAGTGCTCT-CCGCATATTGTCT----AGATATCTTGAAGTTTTACTCGGG-GTTTAGGTC-AAAAGG-GCGGAAATGGTAT-TCA-ACCT-GGGATAAAC-C-ATATCTCAACAT-ATTAATC-ATTT-G-AATCTGACCT--ATATGAA-----TTTTTTTTAATGAAATAG-AATCA--TC--TT-TCAT-TGAT-T---T-TTTA-----TTTAATAATT--ATTC-----T--TCTT---ATCATAAAAGATAGATTATTAGTTTTTAC-AC--TGTAC-TTGATACATAATTGTCGCTTCACCCTTTAGAGGC-ATTTAGTACTGT--T-ATT-GACACACC-------TTC-ATT----TGCG----------------AATAAAGTGAGATAC--AGCATAC-------A-----AC---T--------AACTAGGCCTTATCATC----T-TGCTGTTCTT----TGTAGTTATGTCTG--CTATGTTAT-ACATTTTACATTTATGCT-AA-AG-----TATTGTACTT-G-AATGTACCGGTA-TT--GTCGTT--TGTGTACCCGCGGTTACGTACC---GTACAAGAAAGAGT-A-CGGTAC---AC------
gi|5 : aTTGGGTACCGCGAAGAAAAAA--TACCGTGGT-ATA-CCGTAAT--AGTTGAAAAATA-CCGCGGT---ACA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATCT-TTAGC-AAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATATGTA--AT----CA----------GCTGTTAAT--TCCACC-AA-T-GTAAATAAAAAGAGAGAAAGTATTTTATTTAAA-TTC-------ATTTTGAAA--TCTGTGACAGAACTAAAG-TTT-------------AA-ATA--A-G----T-ATA--AAA----------------TCTT--ATAC--A-ATATGGTACTAT--ACAGC----AGTG-TCT---GCATTTTGTCT----AAACTT----AAGTTTTACTCGGG-GTTT--GTCT-AATTG-GCGCAAATGGCAT-TTG-ACCT-GGG-TAAAC-C-AT---TCAACAT-G--AAAT-ATTT-ATAATCT-ACAT-GATATTAAATG--TTTTC-TTAATAAAATAG-AAT-A--TTTATT-CCAT-TGAT-A---A-TTTA---A-TTTGATG--T--GTT------T--TCTT---ATC--------------AATTGTTTTTAC-ATA-TGTAA-TT----CATA-----TG-TTTACCC-TTAGAGGCTATT--GTACTGTAAT-ATTAAACATACCTTTGAGTTTC-ATTACAATGGGAT--GAAGTATA--A-AATAAAGTGAGTCAC--AGCGTACATATACTATAGGTACTTATAGGCCTAGATATATGCC-TATTATTTAACTGTGTTTCTCTTGATATTTAATTATTTTTG--CTTTGTT-T-ATATTTTACATTTTTGCT-AGGAGTTTAATATTGGACTT-G-AATGTAGCGGTATTT--GGC-TT--TGTGTA-CCGCAG-TACGTACC--AGTACTA-GAAAAGT-ACCGGT-----------------------------AAT---A-CCGCGCACCcgcgtatacggcggtaataccggccacc
gi|6 : GGAAGTAT-TGATTTAAA-TTCAT-------TTTCAAA--TCT-TGACAGAACTAAAG-TTTATTCTGAACATAAAA--TA--A-G----T-ATA--TAA----------------T-TT--ATAC--A-ATA-----CTAT--ACAGC----A-TG-TCT-CCGCATCT-------------------AAGTTTTACTCGGG-GTTT--GTCTAA-TTG-GCGTAAATGGCAT-TTG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AA-T-ATTT-ATAATCT-ACAT-GATATTAAATG--GTTC--TTAATAAAATAG-TAT-A--TC--TTTCCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------T--TCT----ATCATAAATAATAAATTAATTGTTTTTATTATA-TGTAA-TT----CATA-----CG-TTTACCC-CTAGAGGCTATT--GTACTG---TTATTAGACATACCTTTCAGTTTCCATTACGATGGGATATGAAG--TAT-A-AATAAAGTGAGTCACA--GCGTAC-------ATAGGTACTTAT--------AGATAGGCC-TATTATT----CA-GTTTCTCTTGATATTTAATTATTTTTG--CTTTGTT-T-AAATCTAACATTTTTGCT-AAGAG-T---TATTGGACTTGG-AATGTACCGGTATTT--GGG-TTTGTGTGTA-CCGCGG-TACGTACC--AGTACAA-GAAAAGT-ACC-GTAC---AT-----------CGGTATA--CCGGTAATA-CCGTGCAACT
gi|7 : TTGGGTACCGCGAAGAAAAAACGCACCGTGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAA-G--GT-ATAC--AGC---AG-ATTTAATCT-TTAGC-AAAACGAT----TCCATGATGTATCGTTT-TTCAGTTGATATTT-AC-T-GCATA--TA--TT----CA----------GCGGTTTTT--TCCTCC-AA-T-GTAAATAAAAA-AGGGAAAAAATCTTATTTAAA-TTC-------ATTTTGAAA--TCAGTGA-AGAACAAAAG-TTTATTCTGAACATAAAA-ATA--A-G------ATA--TAA----------------TCTTA-ATAC--T-ATA------TAT--ACAGT----AGTG-TCT-CCTCATCTT----------ACG---------------CGGG-GTTT--GAAT-AATTG-GCGGAAATGGTAT-TAG-ACCT-GGG-TAAAT-C-AT---TAAACAT-A--AAAT-ATTT-AAAATCT-ATCT-GATATTAAATG--CATTC-TTAATGAATTAG-AAT-AT-TT--TT-CCAT-TGAC-ATTTT-TTTT---ATTTTGATA--T--GTT------T--TCTTATAATCATAAATAATAAATTCATTCTTTTCAC-ACA-TGTAC-TT----CATA-----CA-TTCACCC-TTAGAG
gi|8 : GTTTGGTACCACGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ACA--------------TACCAC-A--GT-ATAC--CGC---AG-ATTTAATTT-TCAGTAAAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------ACTGTTAAT--TCCTCC-TA-T-GTAAATAAAAG-AGAGAAAGTAT---ATTTAAG-TTC-------ATCTTCAAA--TCTGTGACAGAACTAAAGTTTTATGC-GAACATAAAATAAA--A-GA--AT-ATATTTAA----------------TCTT--ATAC--A-AGT----ACTAT--ACAGC----AG-G-TCTCCCGCATCTTG-CTGTAAACACGC-----AGTTTTACTCGGGCGTTT--GTCTAA--TGTGCGTAAATGGCATCTTGCACCT-GGG-GAAAC-CAATA--TCAAAAT-A--AAATAATTT-ATAATCT-ACTTCGATAATAAGTT--TTTTCTTTAA-AAATTTG-AATAA--TC--TT-CCAT-CGATAA---A-TTGA---ATTTTGATG--T--TTTTTTTTAT--TTTT---ATCATAAA
gi|9 : aGTCGGGTACTGCTAAGAAAAAACGTACTGCAGT-ATA-CCGTAAA--ATTTGAAAAATA-CCATGGT---ATACACATGTA------TACCAC-A--GT-ATAC--CAC---AG-ATTTAATCT-TCAGTAAAA-TGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------GTCGTTTAT--TCCTCA-AA-T-GTAAATAAGAA-AGGGAAAGTATCTTATTTAAA-TTCAT------TTT
gi|9 : gaTT----TGTGATATTTTTTATATTTA--TATTTTTC--CTTTATT-T-AAATTTTACAATCTTTTT-AAGAGTT----ATTG--------------TCGATATTT--GGC-TT--TGTGTA-CCACGG-TACGTACC--AGTACAA-GAAAAAT-ACTGGT-----------------------------AAT---A-CCGTGCACCTCgtgatattttttatatttatatttttcctttatttaaattttacaatctttttaagagttattgtcgatatttggctttgtgtaccacggtacgtaccagtacaagaaaaatactggtaataccgtgcacctctactcaatt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TCTACACACTTAGTCATTTTGTTTTAGAGTCTATCTGTAA
Alignments
lowQualScore : 33333333333333 11111 1111 1111111111 33333333 3333 2222222222222222 11 222222222222 11111 111 111 11111 111111 11111 111111 222 1111111 2222222222 111111 111111111 333333333333333333333333333333333333333
lowQualScore : 3 3 44 3 555 00000000000000 2 33 2 33 555 2 2 22222 6666 3 3 3 3 3 3 3 77 44 0000 4444444444 0 55 3 3 3 4 6 5 4 44444444 3 66 2 4 8 55 4 0000 4 66 9999999999999999 00 777777777777 66 9999 1 4 55 22 9999 1 33333 4 55 444 4 4 3 4 4 4 4 4 222 4 66 4 4 2 4 1 4 1 66666 5 3 3 4 8 99 99 8 4 4 22222 777 55 55 555555 55 777 11 3 4 4 4 9999 11111 4 4 77 77 2 5 5 66 888888 5 0 777 6 6666666 2 1111111111 5 1 9999 55 777 4 4 1 2 3 888888 7 3 55 3 44 3 3 44 3 333333333 3 3 666666666666666666666666666666666666666 55
lowQualScore : . . .. . ... .............. . .. . .. ... . . ..... .... . . . . . . . .. .. .... .......... . .. . . . . . . . ........ . .. . . . .. . .... . .. ................ .. ............ .. .... . . .. .. .... . ..... . .. ... . . . . . . . . ... . .. . . . . . . . ..... . . . . . .. .. . . . ..... ... .. .. ...... .. ... .. . . . . .... ..... . . .. .. . . . .. ...... . . ... . ....... . .......... . . .... .. ... . . . . . ...... . . .. . .. . . .. . ......... . . ....................................... ..
lowQualScore : 6 3 66 3 888 00000000000000 9 99 9 99 000 9 9 44444 5555 1 3 3 8 3 3 3 99 66 4444 6666666666 5 00 6 6 6 0 4 8 0 44444444 9 11 2 4 0 55 0 4444 4 11 4444444444444444 66 444444444444 11 4444 1 4 66 99 4444 1 11111 0 55 777 0 4 4 4 4 4 4 4 222 4 11 4 4 2 4 9 4 0 44444 6 2 3 0 0 55 55 0 0 0 22222 000 55 55 555555 55 000 00 4 4 4 4 4444 11111 4 4 99 99 5 0 0 99 666666 0 4 000 4 2222222 0 4444444444 0 0 4444 33 222 4 4 0 2 6 555555 3 6 00 3 66 3 3 66 3 333333333 3 8 111111111111111111111111111111111111111 00
consensus : GTTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATCT-TTAGTAAAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------GCTGTTAAT--TCCTCC-AA-T-GTAAATAAAAA-AGAGAAAGTATCTNATTTAAA-TTCAT-----ATTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCTGAACATAAAA-ATA--A-G---AT-ATA--TAA----------------TCTT--ATAC--A-ATA----ACTAT--ACAGC----AGTG-TCT-CCGCATCTTGTCT----ACACGC----AAGTTTTACTCGGG-GTTT--GTCTAAATTG-GCGTAAATGGCAT-TCG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATANTAAATG--TTTTCTTTAATAAAATAG-AAT-A--TC--TT-CCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------TT--CTT---ATCATAAATAATAAATTAATTGTTTTTA-CATA-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTACTGT--TATTAGACATACCTTTGAGTTT-C-ATTACGATGGG--ATGAAG--TA--A-AATAAAGTGAGTCAC--AGCTTAC-------ATAGGTACTTAT--------ATATAGG-CNTATTATT----TGTGTTTCTCTTGATATTTAATTATTTTTG--CTTTGTT-T-AAATTTNACATTTTTGCT-AAGAGTT---TATTGGACTT-G-AATGTACCGGTATTT--GGC-TT--TGTGTA-CCGCGG-TACGTACC--AGT-ACAAG---------AAA-AGTACCGG---TACA------CCG-G--T-AT-----A-C--CG--GTAATA--CCGCGCACCTC
Reference ( family-281 ) : GTTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATCT-TTAGTAAAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------GCTGTTAAT--TCCTCC-AA-T-GTAAATAAAAA-AGAGAAAGTATCTNATTTAAA-TTCAT-----ATTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCTGAACATAAAA-ATA--A-G---AT-ATA--TAA----------------TCTT--ATAC--A-ATA----ACTAT--ACAGC----AGTG-TCT-CCGCATCTTGTCT----ACACGC----AAGTTTTACTCGGG-GTTT--GTCTAAATTG-GCGTAAATGGCAT-TCG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATANTAAATG--TTTTCTTTAATAAAATAG-AAT-A--TC--TT-CCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------TT--CTT---ATCATAAATAATAAATTAATTGTTTTTA-CATA-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTACTGT--TATTAGACATACCTTTGAGTTT-C-ATTACGATGGG--ATGAAG--TA--A-AATAAAGTGAGTCACA-AGCTTAC-------ATAGGTACTTAT--------ATATAGG-CNTATTATT----TGTGTTTCTCTTGATATTTAATTATTTTTG--CTTTGTT-T-AAATTTNACATTTTTGCT-AAGAGTT---TATTGGACTT-G-AATGTACCGGTATTT--GGC-TT--TGTGTA-CCGCGG-TACGTACC--AGT-ACAAG---------AAA-AGTACCGG---TACA------CCG-G--T-AT-----A-C--CA--ATAATA--CCGCGCACCTC
gi|1 : TTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ATATACCCGGGGGTATATACCAC-G--GT-ATAC--CGC---AG-ATTTAATGA-TTAGTAGAT-TGAC----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CACTATTAATCAGCTGTTAAT--TCCTCC-AA-T-GCAAATAAAAA-AGAAAAAGTATTTGATTTAAA-TTGAT-----TTTCT---A--TCTGTGACAAAACTAAAG-TTTATTCTGAACATAAAA-ATA--A-GTATATGATA--TAAATCATACAGTACCAATTTTT--ATAC--A-ATA----CTTATGTACAGC----AGTG-TCT-CCGCATCTTTTCA----ACATGC----AAGTTTTACTCGGG-GTTT--GTCTAA-TTG-GCGTAAATGGCAT-TTG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATATTAAATG--TTTTCTT-AATAAAACAG-AAT-A--TCA-TT-CCAA-TGAT-A---A-TTTA---ATTTTAATG--T--GTT------TTATTTT---ATCATTAATAATAAATTAATTGTTTTTA-CATG-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTGCTGT--TATTAGACATACCTTTGAGTTT-C-ATTACGATGGG--ATGAAGTATA--A-AATAGAGTGAGTCAC--AGCTCAC-------ACAGGTACTTAT--------ATATAGG-CATATTATT----TGTGTTTTTCTCGATATTTAA-TATTTTTG--CTTTGTT-T-AAATTTTACA-TTTTGCT-AAGAG-T---TATTGGACTT-G-AATGTACC-GTATTT--GGC-TT--TGTGTA-CCGCGA-TACGTACC--AGT--CAAA---------AAA-AGTA----------A------CCG-G--T-AT-----A-C--CG--GTAATA--CCGCGC
gi|10 : GCTTTAA-CGTACTGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTACTGT--TATTAGACATACCTTTGAGTTT-C-ATTACGATGGG--ATGAAG--TAT-ACAATAAAGTGAGTCACT--GCTTAC-------ATAGGTACTTAT--------ATATAGG-CATATTATT----TGTGTTTCTCTTGATATTTAATTACTTTTG--CTTTGTT-T-AAATTTTACATTTTTGCT-AAGAG-T---TATTGGACTT-G-AATGTACCGGTATTT--GGC-TT--TGTGTA-CCGCGG-TACGTACC--ATT-ACAAG---------AAA-AGTACTGG---TACA------CCG-GTAT-AT-----A-C--CG--GTAATA--CCGCACACCTC
gi|11 : GTTGTGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAC--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAC-G--GT-ATAC--CGC---AGTATATA--CC----------ACGGTGTTTTTTAGTAT-TATCGTTT-TT-----GTGATTT-AT-T-GCATA--TA--AT----CA----------GCTGTTAAT--TCCTCC-AA-T-GTAAATAAGGA-AGAGAAAGTATTTGATTTAAA-TTC-------ATTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCTGAACATAACA-ATA--A-
gi|12 : gaCATACCTTT-------C-ATTACGATGGG--AGGAAG--TA--A-A-----GTGAGTCACA--GC---------------GTA-TTAT--------AGATAGG-CGTACTATT----TGTGATTATCTCGATATTTA--T-TTTTTGATTTTTTTT-T-AAATTAAATAATTCTATT-AAGAGTT----ATTGGACTT-G-AATATACCGGTATTT--GTC-TT--TGAGTA-CCGCGG-TACGTTCC--GAT-ACAAG---------AAA-A-TACTGG---TATA------CCG-G---------------------TAATA--CCGCGCATCTCat
gi|13 : A--------------TACCAT-G--GT-ATAC--CGC---AG-ATTTAATCT-TTGGTACAA-TGAT----TCTATTAT-TATCGTTT-GT-AGCTGTAATTT-AT-T-GCATA--TA--ATCATGCA----------GCCGTGTAT--TCCTCC-AT-T-GTAAAT-AAAA-AGGGAAAGTATCTTATTTAA
gi|14 : cGG-GTTT--GTCTAC-TTG-GTGGAAATGGTAT-TCG-ACCT-GGG-TAAAC-------------AT-A--AAAT-ATCT-ATAATAT-ATCT-GATGATA--------------------------AT-A--TT--TT-C----------------TTA---ATTTTGATA--T--GTT------TT--CTT---ATCATATATGATAAATTTATTGTTTTT
gi|15 : TTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATAGCCGTGAT--ATTTGAAAAATACCCGCGGT---ATAT-------------TACCACGG--GT-ATAC--CGC---AG-ATTTAATC--TAAGT-AAAACGAT----TCCATTAT-TATCGT
gi|16 : TGTT-AAGAGTT----ATCAGACTTTG-AATGTACTGGTA----------T--CATGTA-TCACAG-TACATACA--TGTAACAGGTTGGGGCACAGA-AATTTTGGAAATATA------CTG-G--C-AT-----A-A--CA--ATAATA--CCGCACACC
gi|17 : CGTGAAGAAAAAACGTACCGCGGT-ATA-CCACAAT--ATTTGAAAAATA-CCACGGT---ACA--------------TACCAT-GTAGT-ATTC--CGC---AG-ATTTAATCT-TTAGT-AAAACGAT----T
gi|18 : CT-AAGAGTT----ATTGGACTT-G-AATATACCGGTATTT--GGT-TT--TGTGTA-CCGCGG-TACGAATC--AGA-ACTAG---------AAA-AGTACCGG---TATA------CCG-G--TAAT-----G-C--CA--
gi|19 : AACATAAAA-GCA--A-G----T-ATA--TAA----------------TCTT--ATAC--A------------------GC----AGTG-TCT---GCATCTTGTCT----ACACGT----AAGTTTTACTTGGG-GTTT--GTCT-ACTTG-GCGTAAATGcacac
gi|2 : GTTGGGTACCACGAAGAAAAAACGCACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ACA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATTT-TTAGCAAAAACGAT----TCCATTAT-T---GTTT-TT-AGTTGCTATTT-AT-T-GCATA--TA--AT----CA----------ACTGTTAAT--TCCTCC-AA-T-GTAAATAAAAG-AGAGAACGTATTTAATTTAAA-TTCATTAATGATTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCT-AACATACAA-GTAAGA-G---AT-ATA--TAA----------------TCTT--ATAC--ATATA----ACTAT--ACAGC----AGTG-TCT-CTGCATCTTGTCT----ACACGC----AAGTTTTACTCGGG-TTTT--GTCTAAATTG-GCGTAAAT-GCAT-TTG-ACCT-GGG-GAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATAATAAA-G--TTTTCTTTAAAAAAATAG-AAT-A--TC--TT-CCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------TT--TTT---ATCATAAATAAGAAATTAATTGTTTTAA-CGGA-TGTAA-TT----CATA-----CG-TTTGTCC-TAAGAGGCTA-T--GTAC-G---TATTAGACATACCTTTGAGTTT-C-ATTACGAT-GG--ATGAAG--TA--A-AATAAAGTGAG-CACA-AGCTTAC-------ATAGGTACTTAT--------A-ATAGG-CATATTATT----TGTGTTTCTCTTGATATTTAATTATTTTC---CTTTGTT-T-AAATTTAACATTTTTGCT-AAGAGTT---TATTGAGCTT-GAAATATACCGGTATTT--GGC-TT--TCTGTA-CCGCGG-TACGTACC--AGT-ACAAA---------AAA-AGTACCGG---TACA------C---G--T-ATATTTCA-C--CAGTATAATAATCCGTGCATCTC
gi|20 : TA-TCGTGTT--ATTTGCAAATTA-CTGGAGT---ATA--------------TAACAC-G--GT-ATAC--CAC---AG-ATTTAGTAT-T
gi|21 : agctgcgttatctgaaaaaaaaaaag--------------TATCAC-G--GTTATAT--CGCCTGAG-ATTCAATTT---------AAC--------TCATTA---ATCATTT-TT-AGTTGGCATTT-AT-T-G-ATAT-TA--AC----CA----------GCTGTatca
gi|22 : C-TT--TCTGTA-CCACGG-TACGTACC--AGT-ACAAA---------AAA-AGTA-CG----------------G-G--T-AT-----A-C--TG--ATTATA--CTGCGCACATC
gi|23 : --TTTTCTT-AATGAAATAG-AAT-A--TC--TTTCCAA-TGAT-A---T-TTTTTTTATTTTGATA--T--GTT------TT--CTT---ATCAT
gi|24 : T-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCCT---TA--AT----TA----------GCTGTTAAT--TCCTCC-AAGT-GTAAA
gi|26 : TGTTTTTA-CCTG-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGG
gi|3 : GTTGG-TACGGCGAAGAAAAAGCGTACCGCGGTAATA-CCG-GATGAATTTGAAAAATA-CCGCGGT---ACA--------------TACC-C-G--GT-ATATAACGC---AG-ATTTAATTTCTTAGTA------------------AT-TATCGTTT-TT-GCTTGTTATTTCAT-TGGCATA--TA--AT----CA----------ACTGTTAATAATCCTCCAAA-TGGTAAATAAAAG-AGAGAAACTATTTAATTTAAATTTCAT------CTTTCAAA--TC-GTGACAGAACCAAAG-TTTATTCTGAACATAAAA-ATA--A-T----T-ATA--TAA----------------TCTT--ATACGAA-AT-----ACTAT--ACAGC----A--G-TCT-CTGCACTATGTCT----ACACGC----AAGTTTTACTCGGG-GTTT--G-CTTAATTG-GCGTAAAT-GCCT-TTG-ACCTGGGG-GAAACAC-AT---TCAACATGA--AAAT-ATTTAAAAATCT-ACAT-GATAATAAATGGTTTTTCTTTA--AAAATAGAAAT-AGCTT--TT-CCATCTGAT-A---ATTTTA---ATTTTGATG--TGGGTT------TT--TTT------------------TT-----TTTTT---ATA-TGTAAGTT----CATA-----CG-TTTGCCC-TTAGAGGCTATT--GTACTGT--TA-TATACATATATTTGAGTTT-CAATTACGATGGG--ATGAAG--TAATA-AAAAAAGTGAGTCACACAGCTTAC-------ATAGGTACTTAT--------ATATAGG-CATA-TATT----TGTGTTTCTCTTGATATTTAATTATTTTCC--TTTTGTT-TAAAATTTAACATTTTTGCTAAAGAGCT---T-TTGGACTT-G-AATGTACCGGTATTTTGGGC-TT--C-TGTA-CCGCGG-T-CGTACCCAAGT-ACAA----------AAA-AGTACCGG---TACAAAATATCCG-G--T-AT-----ACC--CG--GTAATA--CCGCGCACCTC
gi|4 : GTTGGGTACCGCGAAGACACAACGTA--GCGGT-TTA-CCGTA-T--ATTTGAAATACG-CCA-GGTCTAATA---------------ACCAC-G--CT-ATAC--CGC---AG-ATT-AATAT-ATAGTAAAA-TGAT----TCTATTAT-TAT-GTGGGTT-AGTTGT-ATTT-ATAT-GCATA--TATAATA---CA----------GCCGTTTAC--TTCTTC-CA-T-GTACATCAAAA-AAGGAAAGCATCT-ATCTAA--TTCAT------TTTTGAAAATTCAGTG-CAGAACAAAA---TTATTCTGA-CATAAAATATA--GTA---AT-CTA--TAA----------------TCTTTGATACGAA-ATA-----CTAT--ACGGCCTATAGTGCTCT-CCGCATATTGTCT----AGATATCTTGAAGTTTTACTCGGG-GTTTAGGTCAAAAG-G-GCGGAAATGGTAT-TCA-ACCT-GGGATAAAC-C-ATATCTCAACAT-ATTAATC-ATTT-G-AATCTGACCT--ATATGAA-----TTTTTTTTAATGAAATAG-AATCA--TC--TT-TCAT-TGAT-T---T-TTTA-----TTTAATAATT--ATTC-----TT--CTT---ATCATAAAAGATAGATTATTAGTTTTTA-CAC--TGTAC-TTGATACATAATTGTCGCTTCACCCTTTAGAGGC-ATTTAGTACTGT--TATT-GACACACC-------TT-C-ATT----TGCG----------------AATAAAGTGAGATAC--AGCATAC-------A-----ACTAAC-----------TAGGCCTTATCATC----T-TGCTGTTCTT----TGTAGTTATGTCTG--CTATGTTAT-ACATTTTACATTTATGCT-AA-AG-----TATTGTACTT-G-AATGTACCGGTA-TT--GTCGTT--TGTGTACCCGCGGTTACGTACC---GT-ACAAG---------AAAGAGTA-CGG---TACA------CCGCG--T-AT-----A-CGGCG--GTAATA--CCGGCCACC
gi|5 : aTTGGGTACCGCGAAGAAAAAA--TACCGTGGT-ATA-CCGTAAT--AGTTGAAAAATA-CCGCGGT---ACA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATCT-TTAGC-AAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATATGTA--AT----CA----------GCTGTTAAT--TCCACC-AA-T-GTAAATAAAAAGAGAGAAAGTATTTTATTTAAA-TTC-------ATTTTGAAA--TCTGTGACAGAACTAAAG-TTT-------------AA-ATA--A-G----T-ATA--AAA----------------TCTT--ATAC--A-ATATGGTACTAT--ACAGC----AGTG-TCT---GCATTTTGTCT----AAACTT----AAGTTTTACTCGGG-GTTT--GTCT-AATTG-GCGCAAATGGCAT-TTG-ACCT-GGG-TAAAC-C-AT---TCAACAT-G--AAAT-ATTT-ATAATCT-ACAT-GATATTAAATG--TTTTC-TTAATAAAATAG-AAT-A--TTTATT-CCAT-TGAT-A---A-TTTA---A-TTTGATG--T--GTT------TT--CTT---ATC--------------AATTGTTTTTA-CATA-TGTAA-TT----CATA-----TG-TTTACCC-TTAGAGGCTATT--GTACTGTAATATTAAACATACCTTTGAGTTT-C-ATTACAATGGG--ATGAAGTATA--A-AATAAAGTGAGTCAC--AGCGTACATATACTATAGGTACTTATAGGCCTAGATATATG-CCTATTATTTAACTGTGTTTCTCTTGATATTTAATTATTTTTG--CTTTGTT-T-ATATTTTACATTTTTGCT-AGGAGTTTAATATTGGACTT-G-AATGTAGCGGTATTT--GGC-TT--TGTGTA-CCGCAG-TACGTACC--AGT-ACTAG---------AAA-AGTACCGG---------------------------------------TAATA--CCGCGCACC
gi|6 : GGAAGTAT-TGATTTAAA-TTCAT-------TTTCAAA--TCT-TGACAGAACTAAAG-TTTATTCTGAACATAAAA--TA--A-G----T-ATA--TAA----------------T-TT--ATAC--A-ATA-----CTAT--ACAGC----A-TG-TCT-CCGCATCT-------------------AAGTTTTACTCGGG-GTTT--GTCTAA-TTG-GCGTAAATGGCAT-TTG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AA-T-ATTT-ATAATCT-ACAT-GATATTAAATG--GTTC--TTAATAAAATAG-TAT-A--TC--TTTCCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------TT--C-T---ATCATAAATAATAAATTAATTGTTTTTATTATA-TGTAA-TT----CATA-----CG-TTTACCC-CTAGAGGCTATT--GTACTGT--TATTAGACATACCTTTCAGTTTCC-ATTACGATGGGATATGAAG--TAT-A-AATAAAGTGAGTCAC--AGCGTAC-------ATAGGTACTTAT--------AGATAGG-CCTATTATT----CA-GTTTCTCTTGATATTTAATTATTTTTG--CTTTGTT-T-AAATCTAACATTTTTGCT-AAGAG-T---TATTGGACTTGG-AATGTACCGGTATTT--GGG-TTTGTGTGTA-CCGCGG-TACGTACC--AGT-ACAAG---------AAA-AGTACC-G---TACA------TCG-G--T-AT-----A-C--CG--GTAATA--CCGTGCAACT
gi|7 : TTGGGTACCGCGAAGAAAAAACGCACCGTGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAA-G--GT-ATAC--AGC---AG-ATTTAATCT-TTAGC-AAAACGAT----TCCATGATGTATCGTTT-TTCAGTTGATATTT-AC-T-GCATA--TA--TT----CA----------GCGGTTTTT--TCCTCC-AA-T-GTAAATAAAAA-AGGGAAAAAATCTTATTTAAA-TTC-------ATTTTGAAA--TCAGTGA-AGAACAAAAG-TTTATTCTGAACATAAAA-ATA--A-G------ATA--TAA----------------TCTTA-ATAC--T-ATA------TAT--ACAGT----AGTG-TCT-CCTCATCTT----------ACG---------------CGGG-GTTT--GAAT-AATTG-GCGGAAATGGTAT-TAG-ACCT-GGG-TAAAT-C-AT---TAAACAT-A--AAAT-ATTT-AAAATCT-ATCT-GATATTAAATG--CATTC-TTAATGAATTAG-AAT-AT-TT--TT-CCAT-TGAC-ATTTT-TTTT---ATTTTGATA--T--GTT------TT--CTTATAATCATAAATAATAAATTCATTCTTTTCA-CACA-TGTAC-TT----CATA-----CA-TTCACCC-TTAGAG
gi|8 : GTTTGGTACCACGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ACA--------------TACCAC-A--GT-ATAC--CGC---AG-ATTTAATTT-TCAGTAAAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------ACTGTTAAT--TCCTCC-TA-T-GTAAATAAAAG-AGAGAAAGTAT---ATTTAAG-TTC-------ATCTTCAAA--TCTGTGACAGAACTAAAGTTTTATGC-GAACATAAAATAAA--A-GA--AT-ATATTTAA----------------TCTT--ATAC--A-AGT----ACTAT--ACAGC----AG-G-TCTCCCGCATCTTG-CTGTAAACACGC-----AGTTTTACTCGGGCGTTT--GTCTAA--TGTGCGTAAATGGCATCTTGCACCT-GGG-GAAAC-CAATA--TCAAAAT-A--AAATAATTT-ATAATCT-ACTTCGATAATAAGTT--TTTTCTTTAA-AAATTTG-AATAA--TC--TT-CCAT-CGATAA---A-TTGA---ATTTTGATG--T--TTTTTTTTATT--TTT---ATCATAAA
gi|9 : aGTCGGGTACTGCTAAGAAAAAACGTACTGCAGT-ATA-CCGTAAA--ATTTGAAAAATA-CCATGGT---ATACACATGTA------TACCAC-A--GT-ATAC--CAC---AG-ATTTAATCT-TCAGTAAAA-TGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------GTCGTTTAT--TCCTCA-AA-T-GTAAATAAGAA-AGGGAAAGTATCTTATTTAAA-TTCAT------TTT
gi|9 : gaTT----TGTGATATTTTTTATATTTA--TATTTTTC--CTTTATT-T-AAATTTTACAATCTTTTT-AAGAGTT----ATTG--------------TCGATATTT--GGC-TT--TGTGTA-CCACGG-TACGTACC--AGT-ACAAG---------AAA-AATACTGG---------------------------------------TAATA--CCGTGCACCTCgtgatattttttatatttatatttttcctttatttaaattttacaatctttttaagagttattgtcgatatttggctttgtgtaccacggtacgtaccagtacaagaaaaatactggtaataccgtgcacctctactcaatt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TCTACACACTTAGTCATTTTGTTTTAGAGTCTATCTGTAA
Alignments
lowQualScore : 33333333333333 11111 1111 1111111111 33333333 3333 2222222222222222 11 222222222222 11111 111 111 11111111 11111 111111 11111 22 1111111 2222222222 1111 111111111 555555555555555555555
lowQualScore : 3 3 44 3 555 00000000000000 2 33 2 33 555 2 2 22222 6666 3 3 3 3 3 3 3 77 44 0000 4444444444 0 55 3 3 3 4 6 5 4 44444444 3 66 2 4 8 55 4 0000 4 66 9999999999999999 00 777777777777 66 9999 1 4 55 22 9999 1 33333 4 55 444 4 4 3 4 4 4 4 4 222 4 66 4 4 2 4 1 4 1 55 8 0 11 4 11111111 8 4 4 22222 777 66666 555555 55 777 11 3 4 4 4 9999 11111 4 4 77 77 2 5 5 66 66 33 5 777 5 6 6666666 2 1111111111 5 1 9999 3 777 4 4 1 3 5 9999 7 3 55 3 44 3 3 44 3 333333333 3 000000000000000000000 44 88888 3 44 44 44
lowQualScore : . . .. . ... .............. . .. . .. ... . . ..... .... . . . . . . . .. .. .... .......... . .. . . . . . . . ........ . .. . . . .. . .... . .. ................ .. ............ .. .... . . .. .. .... . ..... . .. ... . . . . . . . . ... . .. . . . . . . . .. . . .. . ........ . . . ..... ... ..... ...... .. ... .. . . . . .... ..... . . .. .. . . . .. .. .. . ... . . ....... . .......... . . .... . ... . . . . . .... . . .. . .. . . .. . ......... . ..................... .. ..... . .. .. ..
lowQualScore : 6 3 66 3 888 00000000000000 9 99 9 99 000 9 9 44444 5555 1 3 3 8 3 3 3 99 66 4444 6666666666 5 00 6 6 6 0 4 8 0 44444444 9 11 2 4 0 55 0 4444 4 11 4444444444444444 66 444444444444 11 4444 1 4 66 99 4444 1 11111 0 55 777 0 4 4 4 4 4 4 4 222 4 11 4 4 2 4 9 4 0 55 1 8 33 0 11111111 0 0 0 22222 000 99999 555555 55 000 00 4 4 4 4 4444 11111 4 4 99 99 5 0 0 99 99 88 0 222 0 4 2222222 0 4444444444 0 0 4444 6 222 4 4 0 6 7 6666 3 6 00 3 66 3 3 66 3 333333333 3 333333333333333333333 66 33333 3 66 66 66
consensus : GTTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATCT-TTAGTAAAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------GCTGTTAAT--TCCTCC-AA-T-GTAAATAAAAA-AGAGAAAGTATCTNATTTAAA-TTCAT-----ATTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCTGAACATAAAA-ATA--A-G---AT-ATA--TAA----------------TCTT--ATAC--A-ATA----ACTAT--ACAGC----AGTG-TCT-CCGCATCTTGTCT----ACACGC----AAGTTTTACTCGGG-GTTT--GTCTAAATTG-GCGTAAATGGCAT-TCG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATANTAAATG--TTTTCTTTAATAAAATAG-AAT-A--TC--TT-CCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------TT--CTT---ATCATAAATAATAAATTAATTGTTTTTA-CATA-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTACTGT--TATTAGACATACCTTTGAGTTT-C-ATTACGATGGG--ATGAAG--TA--A-AATAAAGTGAGT--CAC-AGCTTAC-------ATAGGTACTTAT--------ATATAGG-CNTATTATT----TGTGTTTCTCTTGATATTTAATTATTTTTG--CTTTGTT-T-AAATTTNACATTTTTGCT-AAGAGTT---TATTGGACTT-G-AATGTACCGGTATTT--GGC-TT--TGTGTA-CCGCGG-TACGTACC--AGT-ACAAG---------AAA-AGTACCGG---TACA------CCG-G--TAT-----A-C--CGG--TAATA--CCGCGCACCTC
Reference ( family-281 ) : GTTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATCT-TTAGTAAAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------GCTGTTAAT--TCCTCC-AA-T-GTAAATAAAAA-AGAGAAAGTATCTNATTTAAA-TTCAT-----ATTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCTGAACATAAAA-ATA--A-G---AT-ATA--TAA----------------TCTT--ATAC--A-ATA----ACTAT--ACAGC----AGTG-TCT-CCGCATCTTGTCT----ACACGC----AAGTTTTACTCGGG-GTTT--GTCTAAATTG-GCGTAAATGGCAT-TCG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATANTAAATG--TTTTCTTTAATAAAATAG-AAT-A--TC--TT-CCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------TT--CTT---ATCATAAATAATAAATTAATTGTTTTTA-CATA-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTACTGT--TATTAGACATACCTTTGAGTTT-C-ATTACGATGGG--ATGAAG--TA--A-AATAAAGTGAGT--CAC-AGCTTAC-------ATAGGTACTTAT--------ATATAGG-CNTATTATT----TGTGTTTCTCTTGATATTTAATTATTTTTG--CTTTGTT-T-AAATTTNACATTTTTGCT-AAGAGTT---TATTGGACTT-G-AATGTACCGGTATTT--GGC-TT--TGTGTA-CCGCGG-TACGTACC--AGT-ACAAG---------AAA-AGTACCGG---TACA------CCG-G--TAT-----A-C--CGG--TAATA--CCGCGCACCTC
gi|1 : TTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ATATACCCGGGGGTATATACCAC-G--GT-ATAC--CGC---AG-ATTTAATGA-TTAGTAGAT-TGAC----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CACTATTAATCAGCTGTTAAT--TCCTCC-AA-T-GCAAATAAAAA-AGAAAAAGTATTTGATTTAAA-TTGAT-----TTTCT---A--TCTGTGACAAAACTAAAG-TTTATTCTGAACATAAAA-ATA--A-GTATATGATA--TAAATCATACAGTACCAATTTTT--ATAC--A-ATA----CTTATGTACAGC----AGTG-TCT-CCGCATCTTTTCA----ACATGC----AAGTTTTACTCGGG-GTTT--GTCTAA-TTG-GCGTAAATGGCAT-TTG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATATTAAATG--TTTTCTT-AATAAAACAG-AAT-A--TCA-TT-CCAA-TGAT-A---A-TTTA---ATTTTAATG--T--GTT------TTATTTT---ATCATTAATAATAAATTAATTGTTTTTA-CATG-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTGCTGT--TATTAGACATACCTTTGAGTTT-C-ATTACGATGGG--ATGAAG--TATAA-AATAGAGTGAGT--CAC-AGCTCAC-------ACAGGTACTTAT--------ATATAGG-CATATTATT----TGTGTTTTTCTCGATATTTAAT-ATTTTTG--CTTTGTT-T-AAATTTTACATTTT-GCT-AAGAGTT----ATTGGACTT-G-AATGTACCG-TATTT--GGC-TT--TGTGTA-CCGCGA-TACGTACC--AGT--CAAA---------AAA-AGTA----------A------CCG-G--TAT-----A-C--CGG--TAATA--CCGCGC
gi|10 : GCTTTAA-CGTACTGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTACTGT--TATTAGACATACCTTTGAGTTT-C-ATTACGATGGG--ATGAAG--TAT-ACAATAAAGTGAGT--CAC-TGCTTAC-------ATAGGTACTTAT--------ATATAGG-CATATTATT----TGTGTTTCTCTTGATATTTAATTACTTTTG--CTTTGTT-T-AAATTTTACATTTTTGCT-AAGAG-T---TATTGGACTT-G-AATGTACCGGTATTT--GGC-TT--TGTGTA-CCGCGG-TACGTACC--ATT-ACAAG---------AAA-AGTACTGG---TACA------CCG-GTATAT-----A-C--CGG--TAATA--CCGCACACCTC
gi|11 : GTTGTGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAC--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAC-G--GT-ATAC--CGC---AGTATATA--CC----------ACGGTGTTTTTTAGTAT-TATCGTTT-TT-----GTGATTT-AT-T-GCATA--TA--AT----CA----------GCTGTTAAT--TCCTCC-AA-T-GTAAATAAGGA-AGAGAAAGTATTTGATTTAAA-TTC-------ATTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCTGAACATAACA-ATA--A-
gi|12 : gaCATACCTTT-------C-ATTACGATGGG--AGGAAG--TA--A-A-----GTGAGT--CAC-AGC---------------GTA-TTAT--------AGATAGG-CGTACTATT----TGTGATTATCTCGATATTTA--T-TTTTTGATTTTTTTT-T-AAATTAAATAATTCTATT-AAGAGTT----ATTGGACTT-G-AATATACCGGTATTT--GTC-TT--TGAGTA-CCGCGG-TACGTTCC--GAT-ACAAG---------AAA-A------------TA------CTG-G--TAT-----A-C--CGG--TAATA--CCGCGCATCTCat
gi|13 : A--------------TACCAT-G--GT-ATAC--CGC---AG-ATTTAATCT-TTGGTACAA-TGAT----TCTATTAT-TATCGTTT-GT-AGCTGTAATTT-AT-T-GCATA--TA--ATCATGCA----------GCCGTGTAT--TCCTCC-AT-T-GTAAAT-AAAA-AGGGAAAGTATCTTATTTAA
gi|14 : cGG-GTTT--GTCTAC-TTG-GTGGAAATGGTAT-TCG-ACCT-GGG-TA-------------AACAT-A--AAAT-ATCT-ATAATAT-ATCT-GATGAT-AATA--TTTTC-TTAAT--------------------------------------TTTG---AT----ATG------TT------TT--CTT---ATCATATATGATAAATTTATTGTTTTT
gi|15 : TTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATAGCCGTGAT--ATTTGAAAAATACCCGCGGT---ATAT-------------TACCACGG--GT-ATAC--CGC---AG-ATTTAATC--TAAGT-AAAACGAT----TCCATTAT-TATCGT
gi|16 : TGTT-AAGAGTT----ATCAGACTTTG-AATGTACTGGTA----------T--CATGTA-TCACAG-TACATACA--TGTAACAGGTTGGGGCACAGA-AATTTTGGAAATATA------CTG-G--CAT-----A-A--CAA--TAATA--CCGCACACC
gi|17 : CGTGAAGAAAAAACGTACCGCGGT-ATA-CCACAAT--ATTTGAAAAATA-CCACGGT---ACA--------------TACCAT-GTAGT-ATTC--CGC---AG-ATTTAATCT-TTAGT-AAAACGAT----T
gi|18 : CT-AAGAGTT----ATTGGACTT-G-AATATACCGGTATTT--GGT-TT--TGTGTA-CCGCGG-TACGAATC--AGA-ACTAG---------AAA-AGTACCG------------------G--TAT-----A-C--CGG--TAATG--CCACACAC
gi|19 : AACATAAAA-GCA--A-G----T-ATA--TAA----------------TCTT--ATAC--A------------------GC----AGTG-TCT---GCATCTTGTCT----ACACGT----AAGTTTTACTTGGG-GTTT--GTCT-ACTTG-GCGTAAATG
gi|2 : GTTGGGTACCACGAAGAAAAAACGCACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ACA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATTT-TTAGCAAAAACGAT----TCCATTAT-T---GTTT-TT-AGTTGCTATTT-AT-T-GCATA--TA--AT----CA----------ACTGTTAAT--TCCTCC-AA-T-GTAAATAAAAG-AGAGAACGTATTTAATTTAAA-TTCATTAATGATTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCT-AACATACAA-GTAAGA-G---AT-ATA--TAA----------------TCTT--ATAC--ATATA----ACTAT--ACAGC----AGTG-TCT-CTGCATCTTGTCT----ACACGC----AAGTTTTACTCGGG-TTTT--GTCTAAATTG-GCGTAAAT-GCAT-TTG-ACCT-GGG-GAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATAATAAA-G--TTTTCTTTAAAAAAATAG-AAT-A--TC--TT-CCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------TT--TTT---ATCATAAATAAGAAATTAATTGTTTTAA-CGGA-TGTAA-TT----CATA-----CG-TTTGTCC-TAAGAGGCTA-T--GTAC-G---TATTAGACATACCTTTGAGTTT-C-ATTACGAT-GG--ATGAAG--TA--A-AATAAAGTGAG---CACAAGCTTAC-------ATAGGTACTTAT--------A-ATAGG-CATATTATT----TGTGTTTCTCTTGATATTTAATTATTTTC---CTTTGTT-T-AAATTTAACATTTTTGCT-AAGAGTT---TATTGAGCTT-GAAATATACCGGTATTT--GGC-TT--TCTGTA-CCGCGG-TACGTACC--AGT-ACAAA---------AAA-AGTACCGG---TACA------C---G--TATATTTCA-C--CAGTATAATAATCCGTGCATCTC
gi|20 : TA-TCGTGTT--ATTTGCAAATTA-CTGGAGT---ATA--------------TAACAC-G--GT-ATAC--CAC---AG-ATTTAGTAT-T
gi|21 : agctgcgttatctgaaaaaaaaaaag--------------TATCAC-G--GTTATAT--CGCCTGAG-ATTCAATTT---------AAC--------TCATTA---ATCATTT-TT-AGTTGGCATTT-AT-T-G-ATAT-TA--AC----CA----------GCTGTatca
gi|22 : C-TT--TCTGTA-CCACGG-TACGTACC--AGT-ACAAA---------AAA-AGTAC--G---------------G-G--TAT-----A-C--TGA--TTATA--CTGCGCACATC
gi|23 : --TTTTCTT-AATGAAATAG-AAT-A--TC--TTTCCAA-TGAT-A---T-TTTTTTTATTTTGATA--T--GTT------TT--CTT---ATCAT
gi|24 : T-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCCT---TA--AT----TA----------GCTGTTAAT--TCCTCC-AAGT-GTAAA
gi|26 : TGTTTTTA-CCTG-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGG
gi|3 : GTTGG-TACGGCGAAGAAAAAGCGTACCGCGGTAATA-CCG-GATGAATTTGAAAAATA-CCGCGGT---ACA--------------TACC-C-G--GT-ATATAACGC---AG-ATTTAATTTCTTAGTA------------------AT-TATCGTTT-TT-GCTTGTTATTTCAT-TGGCATA--TA--AT----CA----------ACTGTTAATAATCCTCCAAA-TGGTAAATAAAAG-AGAGAAACTATTTAATTTAAATTTCAT------CTTTCAAA--TC-GTGACAGAACCAAAG-TTTATTCTGAACATAAAA-ATA--A-T----T-ATA--TAA----------------TCTT--ATACGAA-AT-----ACTAT--ACAGC----A--G-TCT-CTGCACTATGTCT----ACACGC----AAGTTTTACTCGGG-GTTT--G-CTTAATTG-GCGTAAAT-GCCT-TTG-ACCTGGGG-GAAACAC-AT---TCAACATGA--AAAT-ATTTAAAAATCT-ACAT-GATAATAAATGGTTTTTCTTTA--AAAATAGAAAT-AGCTT--TT-CCATCTGAT-A---ATTTTA---ATTTTGATG--TGGGTT------TT--TTT------------------TT-----TTTTT---ATA-TGTAAGTT----CATA-----CG-TTTGCCC-TTAGAGGCTATT--GTACTGT--TA-TATACATATATTTGAGTTT-CAATTACGATGGG--ATGAAG--TAATA-AAAAAAGTGAGTCACAC-AGCTTAC-------ATAGGTACTTAT--------ATATAGG-CATA-TATT----TGTGTTTCTCTTGATATTTAATTATTTTCC--TTTTGTT-TAAAATTTAACATTTTTGCTAAAGAGCT---T-TTGGACTT-G-AATGTACCGGTATTTTGGGC-TT--C-TGTA-CCGCGG-T-CGTACCCAAGT-ACAA----------AAA-AGTACCGG---TACAAAATATCCG-G--TAT-----ACC--CGG--TAATA--CCGCGCACCTC
gi|4 : GTTGGGTACCGCGAAGACACAACGTA--GCGGT-TTA-CCGTA-T--ATTTGAAATACG-CCA-GGTCTAATA---------------ACCAC-G--CT-ATAC--CGC---AG-ATT-AATAT-ATAGTAAAA-TGAT----TCTATTAT-TAT-GTGGGTT-AGTTGT-ATTT-ATAT-GCATA--TATAATA---CA----------GCCGTTTAC--TTCTTC-CA-T-GTACATCAAAA-AAGGAAAGCATCT-ATCTAA--TTCAT------TTTTGAAAATTCAGTG-CAGAACAAAA---TTATTCTGA-CATAAAATATA--GTA---AT-CTA--TAA----------------TCTTTGATACGAA-ATA-----CTAT--ACGGCCTATAGTGCTCT-CCGCATATTGTCT----AGATATCTTGAAGTTTTACTCGGG-GTTTAGGTCAAAAG-G-GCGGAAATGGTAT-TCA-ACCT-GGGATAAAC-C-ATATCTCAACAT-ATTAATC-ATTT-G-AATCTGACCT--ATATGAA-----TTTTTTTTAATGAAATAG-AATCA--TC--TT-TCAT-TGAT-T---T-TTTA-----TTTAATAATT--ATTC-----TT--CTT---ATCATAAAAGATAGATTATTAGTTTTTA-CAC--TGTAC-TTGATACATAATTGTCGCTTCACCCTTTAGAGGC-ATTTAGTACTGT--TATT-GACACACC-------TT-C-ATT----TGCG----------------AATAAAGTGAGA--TAC-AGCATAC-------A-----ACTAAC-----------TAGGCCTTATCATC----T-TGCTGTTCTT----TGTAGTTATGTCTG--CTATGTTAT-ACATTTTACATTTATGCT-AA-AG-----TATTGTACTT-G-AATGTACCGGTA-TT--GTCGTT--TGTGTACCCGCGGTTACGTACC---GT-ACAAG---------AAAGAGTA-CGG---TACA------CCGCG--TAT-----A-CGGCGG--TAATA--CCGGCCACC
gi|5 : aTTGGGTACCGCGAAGAAAAAA--TACCGTGGT-ATA-CCGTAAT--AGTTGAAAAATA-CCGCGGT---ACA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATCT-TTAGC-AAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATATGTA--AT----CA----------GCTGTTAAT--TCCACC-AA-T-GTAAATAAAAAGAGAGAAAGTATTTTATTTAAA-TTC-------ATTTTGAAA--TCTGTGACAGAACTAAAG-TTT-------------AA-ATA--A-G----T-ATA--AAA----------------TCTT--ATAC--A-ATATGGTACTAT--ACAGC----AGTG-TCT---GCATTTTGTCT----AAACTT----AAGTTTTACTCGGG-GTTT--GTCT-AATTG-GCGCAAATGGCAT-TTG-ACCT-GGG-TAAAC-C-AT---TCAACAT-G--AAAT-ATTT-ATAATCT-ACAT-GATATTAAATG--TTTTC-TTAATAAAATAG-AAT-A--TTTATT-CCAT-TGAT-A---A-TTTA---A-TTTGATG--T--GTT------TT--CTT---ATC--------------AATTGTTTTTA-CATA-TGTAA-TT----CATA-----TG-TTTACCC-TTAGAGGCTATT--GTACTGTAATATTAAACATACCTTTGAGTTT-C-ATTACAATGGG--ATGAAGTATA--A-AATAAAGTGAGT--CAC-AGCGTACATATACTATAGGTACTTATAGGCCTAGATATATG-CCTATTATTTAACTGTGTTTCTCTTGATATTTAATTATTTTTG--CTTTGTT-T-ATATTTTACATTTTTGCT-AGGAGTTTAATATTGGACTT-G-AATGTAGCGGTATTT--GGC-TT--TGTGTA-CCGCAG-TACGTACC--AGT-ACTAG---------AAA-AG----------------------------T-----A-C--CGG--TAATA--CCGCGCACC
gi|6 : GGAAGTAT-TGATTTAAA-TTCAT-------TTTCAAA--TCT-TGACAGAACTAAAG-TTTATTCTGAACATAAAA--TA--A-G----T-ATA--TAA----------------T-TT--ATAC--A-ATA-----CTAT--ACAGC----A-TG-TCT-CCGCATCT-------------------AAGTTTTACTCGGG-GTTT--GTCTAA-TTG-GCGTAAATGGCAT-TTG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AA-T-ATTT-ATAATCT-ACAT-GATATTAAATG--GTTC--TTAATAAAATAG-TAT-A--TC--TTTCCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------TT--C-T---ATCATAAATAATAAATTAATTGTTTTTATTATA-TGTAA-TT----CATA-----CG-TTTACCC-CTAGAGGCTATT--GTACTGT--TATTAGACATACCTTTCAGTTTCC-ATTACGATGGGATATGAAG--TAT-A-AATAAAGTGAGT--CAC-AGCGTAC-------ATAGGTACTTAT--------AGATAGG-CCTATTATT----CA-GTTTCTCTTGATATTTAATTATTTTTG--CTTTGTT-T-AAATCTAACATTTTTGCT-AAGAG-T---TATTGGACTTGG-AATGTACCGGTATTT--GGG-TTTGTGTGTA-CCGCGG-TACGTACC--AGT-ACAAG---------AAA-AGTACC-G---TACA------TCG-G--TAT-----A-C--CGG--TAATA--CCGTGCAACT
gi|7 : TTGGGTACCGCGAAGAAAAAACGCACCGTGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAA-G--GT-ATAC--AGC---AG-ATTTAATCT-TTAGC-AAAACGAT----TCCATGATGTATCGTTT-TTCAGTTGATATTT-AC-T-GCATA--TA--TT----CA----------GCGGTTTTT--TCCTCC-AA-T-GTAAATAAAAA-AGGGAAAAAATCTTATTTAAA-TTC-------ATTTTGAAA--TCAGTGA-AGAACAAAAG-TTTATTCTGAACATAAAA-ATA--A-G------ATA--TAA----------------TCTTA-ATAC--T-ATA------TAT--ACAGT----AGTG-TCT-CCTCATCTT----------ACG---------------CGGG-GTTT--GAAT-AATTG-GCGGAAATGGTAT-TAG-ACCT-GGG-TAAAT-C-AT---TAAACAT-A--AAAT-ATTT-AAAATCT-ATCT-GATATTAAATG--CATTC-TTAATGAATTAG-AAT-AT-TT--TT-CCAT-TGAC-ATTTT-TTTT---ATTTTGATA--T--GTT------TT--CTTATAATCATAAATAATAAATTCATTCTTTTCA-CACA-TGTAC-TT----CATA-----CA-TTCACCC-TTAGAG
gi|8 : GTTTGGTACCACGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ACA--------------TACCAC-A--GT-ATAC--CGC---AG-ATTTAATTT-TCAGTAAAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------ACTGTTAAT--TCCTCC-TA-T-GTAAATAAAAG-AGAGAAAGTAT---ATTTAAG-TTC-------ATCTTCAAA--TCTGTGACAGAACTAAAGTTTTATGC-GAACATAAAATAAA--A-GA--AT-ATATTTAA----------------TCTT--ATAC--A-AGT----ACTAT--ACAGC----AG-G-TCTCCCGCATCTTG-CTGTAAACACGC-----AGTTTTACTCGGGCGTTT--GTCTAA--TGTGCGTAAATGGCATCTTGCACCT-GGG-GAAAC-CAATA--TCAAAAT-A--AAATAATTT-ATAATCT-ACTTCGATAATAAGTT--TTTTCTTTAA-AAATTTG-AATAA--TC--TT-CCAT-CGATAA---A-TTGA---ATTTTGATG--T--TTTTTTTTATT--TTT---ATCATAAA
gi|9 : aGTCGGGTACTGCTAAGAAAAAACGTACTGCAGT-ATA-CCGTAAA--ATTTGAAAAATA-CCATGGT---ATACACATGTA------TACCAC-A--GT-ATAC--CAC---AG-ATTTAATCT-TCAGTAAAA-TGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------GTCGTTTAT--TCCTCA-AA-T-GTAAATAAGAA-AGGGAAAGTATCTTATTTAAA-TTCAT------TTT
gi|9 : gaTT----TGTGATATTTTTTATATTTA--TATTTTTC--CTTTATT-T-AAATTTTACAATCTTTTT-AAGAGTT----ATTG--------------TCGATATTT--GGC-TT--TGTGTA-CCACGG-TACGTACC--AGT-ACAAG---------AAA-A----------------------------AT-----A-C--TGG--TAATA--CCGTGCACCTCgtgatattttttatatttatatttttcctttatttaaattttacaatctttttaagagttattgtcgatatttggctttgtgtaccacggtacgtaccagtacaagaaaaatactggtaataccgtgcacctctactcaatt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TCTACACACTTAGTCATTTTGTTTTAGAGTCTATCTGTAA
Alignments
lowQualScore : 33333333333333 11111 1111 1111111111 33333333 3333 2222222222222222 11 222222222222 11111 111 111 11111111 11111 111111 11111 22 1111111 2222222222 1111 111111111 555555555555555555555
lowQualScore : 3 3 44 3 555 00000000000000 2 33 2 33 555 2 2 22222 6666 3 3 3 3 3 3 3 77 44 0000 4444444444 0 55 3 3 3 4 6 5 4 44444444 3 66 2 4 8 55 4 0000 4 66 9999999999999999 00 777777777777 66 9999 1 4 55 22 9999 1 33333 4 55 444 4 4 3 4 4 4 4 4 222 4 66 4 4 2 4 1 4 1 55 8 0 11 4 11111111 8 4 4 22222 777 66666 555555 55 777 11 3 4 4 4 9999 11111 4 4 77 77 2 5 5 66 66 33 5 777 5 6 6666666 2 1111111111 5 1 9999 3 777 4 4 1 3 5 9999 7 3 55 3 44 3 3 44 3 333333333 3 000000000000000000000 44 88888 3 44 44 44
lowQualScore : . . .. . ... .............. . .. . .. ... . . ..... .... . . . . . . . .. .. .... .......... . .. . . . . . . . ........ . .. . . . .. . .... . .. ................ .. ............ .. .... . . .. .. .... . ..... . .. ... . . . . . . . . ... . .. . . . . . . . .. . . .. . ........ . . . ..... ... ..... ...... .. ... .. . . . . .... ..... . . .. .. . . . .. .. .. . ... . . ....... . .......... . . .... . ... . . . . . .... . . .. . .. . . .. . ......... . ..................... .. ..... . .. .. ..
lowQualScore : 6 3 66 3 888 00000000000000 9 99 9 99 000 9 9 44444 5555 1 3 3 8 3 3 3 99 66 4444 6666666666 5 00 6 6 6 0 4 8 0 44444444 9 11 2 4 0 55 0 4444 4 11 4444444444444444 66 444444444444 11 4444 1 4 66 99 4444 1 11111 0 55 777 0 4 4 4 4 4 4 4 222 4 11 4 4 2 4 9 4 0 55 1 8 33 0 11111111 0 0 0 22222 000 99999 555555 55 000 00 4 4 4 4 4444 11111 4 4 99 99 5 0 0 99 99 88 0 222 0 4 2222222 0 4444444444 0 0 4444 6 222 4 4 0 6 7 6666 3 6 00 3 66 3 3 66 3 333333333 3 333333333333333333333 66 33333 3 66 66 66
consensus : GTTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATCT-TTAGTAAAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------GCTGTTAAT--TCCTCC-AA-T-GTAAATAAAAA-AGAGAAAGTATCTNATTTAAA-TTCAT-----ATTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCTGAACATAAAA-ATA--A-G---AT-ATA--TAA----------------TCTT--ATAC--A-ATA----ACTAT--ACAGC----AGTG-TCT-CCGCATCTTGTCT----ACACGC----AAGTTTTACTCGGG-GTTT--GTCTAAATTG-GCGTAAATGGCAT-TCG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATANTAAATG--TTTTCTTTAATAAAATAG-AAT-A--TC--TT-CCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------TT--CTT---ATCATAAATAATAAATTAATTGTTTTTA-CATA-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTACTGT--TATTAGACATACCTTTGAGTTT-C-ATTACGATGGG--ATGAAG--TA--A-AATAAAGTGAGT--CAC-AGCTTAC-------ATAGGTACTTAT--------ATATAGG-CNTATTATT----TGTGTTTCTCTTGATATTTAATTATTTTTG--CTTTGTT-T-AAATTTNACATTTTTGCT-AAGAGTT---TATTGGACTT-G-AATGTACCGGTATTT--GGC-TT--TGTGTA-CCGCGG-TACGTACC--AGT-ACAAG---------AAA-AGTACCGG---TACA------CCG-G--TAT-----A-C--CGG--TAATA--CCGCGCACCTC
Reference ( family-281 ) : GTTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATCT-TTAGTAAAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------GCTGTTAAT--TCCTCC-AA-T-GTAAATAAAAA-AGAGAAAGTATCTNATTTAAA-TTCAT-----ATTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCTGAACATAAAA-ATA--A-G---AT-ATA--TAA----------------TCTT--ATAC--A-ATA----ACTAT--ACAGC----AGTG-TCT-CCGCATCTTGTCT----ACACGC----AAGTTTTACTCGGG-GTTT--GTCTAAATTG-GCGTAAATGGCAT-TCG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATANTAAATG--TTTTCTTTAATAAAATAG-AAT-A--TC--TT-CCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------TT--CTT---ATCATAAATAATAAATTAATTGTTTTTA-CATA-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTACTGT--TATTAGACATACCTTTGAGTTT-C-ATTACGATGGG--ATGAAG--TA--A-AATAAAGTGAGT--CAC-AGCTTAC-------ATAGGTACTTAT--------ATATAGG-CNTATTATT----TGTGTTTCTCTTGATATTTAATTATTTTTG--CTTTGTT-T-AAATTTNACATTTTTGCT-AAGAGTT---TATTGGACTT-G-AATGTACCGGTATTT--GGC-TT--TGTGTA-CCGCGG-TACGTACC--AGT-ACAAG---------AAA-AGTACCGG---TACA------CCG-G--TAT-----A-C--CGG--TAATA--CCGCGCACCTC
gi|1 : TTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ATATACCCGGGGGTATATACCAC-G--GT-ATAC--CGC---AG-ATTTAATGA-TTAGTAGAT-TGAC----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CACTATTAATCAGCTGTTAAT--TCCTCC-AA-T-GCAAATAAAAA-AGAAAAAGTATTTGATTTAAA-TTGAT-----TTTCT---A--TCTGTGACAAAACTAAAG-TTTATTCTGAACATAAAA-ATA--A-GTATATGATA--TAAATCATACAGTACCAATTTTT--ATAC--A-ATA----CTTATGTACAGC----AGTG-TCT-CCGCATCTTTTCA----ACATGC----AAGTTTTACTCGGG-GTTT--GTCTAA-TTG-GCGTAAATGGCAT-TTG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATATTAAATG--TTTTCTT-AATAAAACAG-AAT-A--TCA-TT-CCAA-TGAT-A---A-TTTA---ATTTTAATG--T--GTT------TTATTTT---ATCATTAATAATAAATTAATTGTTTTTA-CATG-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTGCTGT--TATTAGACATACCTTTGAGTTT-C-ATTACGATGGG--ATGAAG--TATAA-AATAGAGTGAGT--CAC-AGCTCAC-------ACAGGTACTTAT--------ATATAGG-CATATTATT----TGTGTTTTTCTCGATATTTAAT-ATTTTTG--CTTTGTT-T-AAATTTTACATTTT-GCT-AAGAGTT----ATTGGACTT-G-AATGTACCG-TATTT--GGC-TT--TGTGTA-CCGCGA-TACGTACC--AGT--CAAA---------AAA-AGTA----------A------CCG-G--TAT-----A-C--CGG--TAATA--CCGCGC
gi|10 : GCTTTAA-CGTACTGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTACTGT--TATTAGACATACCTTTGAGTTT-C-ATTACGATGGG--ATGAAG--TAT-ACAATAAAGTGAGT--CAC-TGCTTAC-------ATAGGTACTTAT--------ATATAGG-CATATTATT----TGTGTTTCTCTTGATATTTAATTACTTTTG--CTTTGTT-T-AAATTTTACATTTTTGCT-AAGAG-T---TATTGGACTT-G-AATGTACCGGTATTT--GGC-TT--TGTGTA-CCGCGG-TACGTACC--ATT-ACAAG---------AAA-AGTACTGG---TACA------CCG-GTATAT-----A-C--CGG--TAATA--CCGCACACCTC
gi|11 : GTTGTGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAC--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAC-G--GT-ATAC--CGC---AGTATATA--CC----------ACGGTGTTTTTTAGTAT-TATCGTTT-TT-----GTGATTT-AT-T-GCATA--TA--AT----CA----------GCTGTTAAT--TCCTCC-AA-T-GTAAATAAGGA-AGAGAAAGTATTTGATTTAAA-TTC-------ATTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCTGAACATAACA-ATA--A-
gi|12 : gaCATACCTTT-------C-ATTACGATGGG--AGGAAG--TA--A-A-----GTGAGT--CAC-AGC---------------GTA-TTAT--------AGATAGG-CGTACTATT----TGTGATTATCTCGATATTTA--T-TTTTTGATTTTTTTT-T-AAATTAAATAATTCTATT-AAGAGTT----ATTGGACTT-G-AATATACCGGTATTT--GTC-TT--TGAGTA-CCGCGG-TACGTTCC--GAT-ACAAG---------AAA-A------------TA------CTG-G--TAT-----A-C--CGG--TAATA--CCGCGCATCTCat
gi|13 : A--------------TACCAT-G--GT-ATAC--CGC---AG-ATTTAATCT-TTGGTACAA-TGAT----TCTATTAT-TATCGTTT-GT-AGCTGTAATTT-AT-T-GCATA--TA--ATCATGCA----------GCCGTGTAT--TCCTCC-AT-T-GTAAAT-AAAA-AGGGAAAGTATCTTATTTAA
gi|14 : cGG-GTTT--GTCTAC-TTG-GTGGAAATGGTAT-TCG-ACCT-GGG-TA-------------AACAT-A--AAAT-ATCT-ATAATAT-ATCT-GATGAT-AATA--TTTTC-TTAAT--------------------------------------TTTG---AT----ATG------TT------TT--CTT---ATCATATATGATAAATTTATTGTTTTT
gi|15 : TTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATAGCCGTGAT--ATTTGAAAAATACCCGCGGT---ATAT-------------TACCACGG--GT-ATAC--CGC---AG-ATTTAATC--TAAGT-AAAACGAT----TCCATTAT-TATCGT
gi|16 : TGTT-AAGAGTT----ATCAGACTTTG-AATGTACTGGTA----------T--CATGTA-TCACAG-TACATACA--TGTAACAGGTTGGGGCACAGA-AATTTTGGAAATATA------CTG-G--CAT-----A-A--CAA--TAATA--CCGCACACC
gi|17 : CGTGAAGAAAAAACGTACCGCGGT-ATA-CCACAAT--ATTTGAAAAATA-CCACGGT---ACA--------------TACCAT-GTAGT-ATTC--CGC---AG-ATTTAATCT-TTAGT-AAAACGAT----T
gi|18 : CT-AAGAGTT----ATTGGACTT-G-AATATACCGGTATTT--GGT-TT--TGTGTA-CCGCGG-TACGAATC--AGA-ACTAG---------AAA-AGTACCG------------------G--TAT-----A-C--CGG--TAATG--CCACACAC
gi|19 : AACATAAAA-GCA--A-G----T-ATA--TAA----------------TCTT--ATAC--A------------------GC----AGTG-TCT---GCATCTTGTCT----ACACGT----AAGTTTTACTTGGG-GTTT--GTCT-ACTTG-GCGTAAATG
gi|2 : GTTGGGTACCACGAAGAAAAAACGCACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ACA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATTT-TTAGCAAAAACGAT----TCCATTAT-T---GTTT-TT-AGTTGCTATTT-AT-T-GCATA--TA--AT----CA----------ACTGTTAAT--TCCTCC-AA-T-GTAAATAAAAG-AGAGAACGTATTTAATTTAAA-TTCATTAATGATTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCT-AACATACAA-GTAAGA-G---AT-ATA--TAA----------------TCTT--ATAC--ATATA----ACTAT--ACAGC----AGTG-TCT-CTGCATCTTGTCT----ACACGC----AAGTTTTACTCGGG-TTTT--GTCTAAATTG-GCGTAAAT-GCAT-TTG-ACCT-GGG-GAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATAATAAA-G--TTTTCTTTAAAAAAATAG-AAT-A--TC--TT-CCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------TT--TTT---ATCATAAATAAGAAATTAATTGTTTTAA-CGGA-TGTAA-TT----CATA-----CG-TTTGTCC-TAAGAGGCTA-T--GTAC-G---TATTAGACATACCTTTGAGTTT-C-ATTACGAT-GG--ATGAAG--TA--A-AATAAAGTGAG---CACAAGCTTAC-------ATAGGTACTTAT--------A-ATAGG-CATATTATT----TGTGTTTCTCTTGATATTTAATTATTTTC---CTTTGTT-T-AAATTTAACATTTTTGCT-AAGAGTT---TATTGAGCTT-GAAATATACCGGTATTT--GGC-TT--TCTGTA-CCGCGG-TACGTACC--AGT-ACAAA---------AAA-AGTACCGG---TACA------C---G--TATATTTCA-C--CAGTATAATAATCCGTGCATCTC
gi|20 : TA-TCGTGTT--ATTTGCAAATTA-CTGGAGT---ATA--------------TAACAC-G--GT-ATAC--CAC---AG-ATTTAGTAT-T
gi|21 : agctgcgttatctgaaaaaaaaaaag--------------TATCAC-G--GTTATAT--CGCCTGAG-ATTCAATTT---------AAC--------TCATTA---ATCATTT-TT-AGTTGGCATTT-AT-T-G-ATAT-TA--AC----CA----------GCTGTatca
gi|22 : C-TT--TCTGTA-CCACGG-TACGTACC--AGT-ACAAA---------AAA-AGTAC--G---------------G-G--TAT-----A-C--TGA--TTATA--CTGCGCACATC
gi|23 : --TTTTCTT-AATGAAATAG-AAT-A--TC--TTTCCAA-TGAT-A---T-TTTTTTTATTTTGATA--T--GTT------TT--CTT---ATCAT
gi|24 : T-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCCT---TA--AT----TA----------GCTGTTAAT--TCCTCC-AAGT-GTAAA
gi|26 : TGTTTTTA-CCTG-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGG
gi|3 : GTTGG-TACGGCGAAGAAAAAGCGTACCGCGGTAATA-CCG-GATGAATTTGAAAAATA-CCGCGGT---ACA--------------TACC-C-G--GT-ATATAACGC---AG-ATTTAATTTCTTAGTA------------------AT-TATCGTTT-TT-GCTTGTTATTTCAT-TGGCATA--TA--AT----CA----------ACTGTTAATAATCCTCCAAA-TGGTAAATAAAAG-AGAGAAACTATTTAATTTAAATTTCAT------CTTTCAAA--TC-GTGACAGAACCAAAG-TTTATTCTGAACATAAAA-ATA--A-T----T-ATA--TAA----------------TCTT--ATACGAA-AT-----ACTAT--ACAGC----A--G-TCT-CTGCACTATGTCT----ACACGC----AAGTTTTACTCGGG-GTTT--G-CTTAATTG-GCGTAAAT-GCCT-TTG-ACCTGGGG-GAAACAC-AT---TCAACATGA--AAAT-ATTTAAAAATCT-ACAT-GATAATAAATGGTTTTTCTTTA--AAAATAGAAAT-AGCTT--TT-CCATCTGAT-A---ATTTTA---ATTTTGATG--TGGGTT------TT--TTT------------------TT-----TTTTT---ATA-TGTAAGTT----CATA-----CG-TTTGCCC-TTAGAGGCTATT--GTACTGT--TA-TATACATATATTTGAGTTT-CAATTACGATGGG--ATGAAG--TAATA-AAAAAAGTGAGTCACAC-AGCTTAC-------ATAGGTACTTAT--------ATATAGG-CATA-TATT----TGTGTTTCTCTTGATATTTAATTATTTTCC--TTTTGTT-TAAAATTTAACATTTTTGCTAAAGAGCT---T-TTGGACTT-G-AATGTACCGGTATTTTGGGC-TT--C-TGTA-CCGCGG-T-CGTACCCAAGT-ACAA----------AAA-AGTACCGG---TACAAAATATCCG-G--TAT-----ACC--CGG--TAATA--CCGCGCACCTC
gi|4 : GTTGGGTACCGCGAAGACACAACGTA--GCGGT-TTA-CCGTA-T--ATTTGAAATACG-CCA-GGTCTAATA---------------ACCAC-G--CT-ATAC--CGC---AG-ATT-AATAT-ATAGTAAAA-TGAT----TCTATTAT-TAT-GTGGGTT-AGTTGT-ATTT-ATAT-GCATA--TATAATA---CA----------GCCGTTTAC--TTCTTC-CA-T-GTACATCAAAA-AAGGAAAGCATCT-ATCTAA--TTCAT------TTTTGAAAATTCAGTG-CAGAACAAAA---TTATTCTGA-CATAAAATATA--GTA---AT-CTA--TAA----------------TCTTTGATACGAA-ATA-----CTAT--ACGGCCTATAGTGCTCT-CCGCATATTGTCT----AGATATCTTGAAGTTTTACTCGGG-GTTTAGGTCAAAAG-G-GCGGAAATGGTAT-TCA-ACCT-GGGATAAAC-C-ATATCTCAACAT-ATTAATC-ATTT-G-AATCTGACCT--ATATGAA-----TTTTTTTTAATGAAATAG-AATCA--TC--TT-TCAT-TGAT-T---T-TTTA-----TTTAATAATT--ATTC-----TT--CTT---ATCATAAAAGATAGATTATTAGTTTTTA-CAC--TGTAC-TTGATACATAATTGTCGCTTCACCCTTTAGAGGC-ATTTAGTACTGT--TATT-GACACACC-------TT-C-ATT----TGCG----------------AATAAAGTGAGA--TAC-AGCATAC-------A-----ACTAAC-----------TAGGCCTTATCATC----T-TGCTGTTCTT----TGTAGTTATGTCTG--CTATGTTAT-ACATTTTACATTTATGCT-AA-AG-----TATTGTACTT-G-AATGTACCGGTA-TT--GTCGTT--TGTGTACCCGCGGTTACGTACC---GT-ACAAG---------AAAGAGTA-CGG---TACA------CCGCG--TAT-----A-CGGCGG--TAATA--CCGGCCACC
gi|5 : aTTGGGTACCGCGAAGAAAAAA--TACCGTGGT-ATA-CCGTAAT--AGTTGAAAAATA-CCGCGGT---ACA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATCT-TTAGC-AAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATATGTA--AT----CA----------GCTGTTAAT--TCCACC-AA-T-GTAAATAAAAAGAGAGAAAGTATTTTATTTAAA-TTC-------ATTTTGAAA--TCTGTGACAGAACTAAAG-TTT-------------AA-ATA--A-G----T-ATA--AAA----------------TCTT--ATAC--A-ATATGGTACTAT--ACAGC----AGTG-TCT---GCATTTTGTCT----AAACTT----AAGTTTTACTCGGG-GTTT--GTCT-AATTG-GCGCAAATGGCAT-TTG-ACCT-GGG-TAAAC-C-AT---TCAACAT-G--AAAT-ATTT-ATAATCT-ACAT-GATATTAAATG--TTTTC-TTAATAAAATAG-AAT-A--TTTATT-CCAT-TGAT-A---A-TTTA---A-TTTGATG--T--GTT------TT--CTT---ATC--------------AATTGTTTTTA-CATA-TGTAA-TT----CATA-----TG-TTTACCC-TTAGAGGCTATT--GTACTGTAATATTAAACATACCTTTGAGTTT-C-ATTACAATGGG--ATGAAGTATA--A-AATAAAGTGAGT--CAC-AGCGTACATATACTATAGGTACTTATAGGCCTAGATATATG-CCTATTATTTAACTGTGTTTCTCTTGATATTTAATTATTTTTG--CTTTGTT-T-ATATTTTACATTTTTGCT-AGGAGTTTAATATTGGACTT-G-AATGTAGCGGTATTT--GGC-TT--TGTGTA-CCGCAG-TACGTACC--AGT-ACTAG---------AAA-AG----------------------------T-----A-C--CGG--TAATA--CCGCGCACC
gi|6 : GGAAGTAT-TGATTTAAA-TTCAT-------TTTCAAA--TCT-TGACAGAACTAAAG-TTTATTCTGAACATAAAA--TA--A-G----T-ATA--TAA----------------T-TT--ATAC--A-ATA-----CTAT--ACAGC----A-TG-TCT-CCGCATCT-------------------AAGTTTTACTCGGG-GTTT--GTCTAA-TTG-GCGTAAATGGCAT-TTG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AA-T-ATTT-ATAATCT-ACAT-GATATTAAATG--GTTC--TTAATAAAATAG-TAT-A--TC--TTTCCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------TT--C-T---ATCATAAATAATAAATTAATTGTTTTTATTATA-TGTAA-TT----CATA-----CG-TTTACCC-CTAGAGGCTATT--GTACTGT--TATTAGACATACCTTTCAGTTTCC-ATTACGATGGGATATGAAG--TAT-A-AATAAAGTGAGT--CAC-AGCGTAC-------ATAGGTACTTAT--------AGATAGG-CCTATTATT----CA-GTTTCTCTTGATATTTAATTATTTTTG--CTTTGTT-T-AAATCTAACATTTTTGCT-AAGAG-T---TATTGGACTTGG-AATGTACCGGTATTT--GGG-TTTGTGTGTA-CCGCGG-TACGTACC--AGT-ACAAG---------AAA-AGTACC-G---TACA------TCG-G--TAT-----A-C--CGG--TAATA--CCGTGCAACT
gi|7 : TTGGGTACCGCGAAGAAAAAACGCACCGTGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAA-G--GT-ATAC--AGC---AG-ATTTAATCT-TTAGC-AAAACGAT----TCCATGATGTATCGTTT-TTCAGTTGATATTT-AC-T-GCATA--TA--TT----CA----------GCGGTTTTT--TCCTCC-AA-T-GTAAATAAAAA-AGGGAAAAAATCTTATTTAAA-TTC-------ATTTTGAAA--TCAGTGA-AGAACAAAAG-TTTATTCTGAACATAAAA-ATA--A-G------ATA--TAA----------------TCTTA-ATAC--T-ATA------TAT--ACAGT----AGTG-TCT-CCTCATCTT----------ACG---------------CGGG-GTTT--GAAT-AATTG-GCGGAAATGGTAT-TAG-ACCT-GGG-TAAAT-C-AT---TAAACAT-A--AAAT-ATTT-AAAATCT-ATCT-GATATTAAATG--CATTC-TTAATGAATTAG-AAT-AT-TT--TT-CCAT-TGAC-ATTTT-TTTT---ATTTTGATA--T--GTT------TT--CTTATAATCATAAATAATAAATTCATTCTTTTCA-CACA-TGTAC-TT----CATA-----CA-TTCACCC-TTAGAG
gi|8 : GTTTGGTACCACGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ACA--------------TACCAC-A--GT-ATAC--CGC---AG-ATTTAATTT-TCAGTAAAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------ACTGTTAAT--TCCTCC-TA-T-GTAAATAAAAG-AGAGAAAGTAT---ATTTAAG-TTC-------ATCTTCAAA--TCTGTGACAGAACTAAAGTTTTATGC-GAACATAAAATAAA--A-GA--AT-ATATTTAA----------------TCTT--ATAC--A-AGT----ACTAT--ACAGC----AG-G-TCTCCCGCATCTTG-CTGTAAACACGC-----AGTTTTACTCGGGCGTTT--GTCTAA--TGTGCGTAAATGGCATCTTGCACCT-GGG-GAAAC-CAATA--TCAAAAT-A--AAATAATTT-ATAATCT-ACTTCGATAATAAGTT--TTTTCTTTAA-AAATTTG-AATAA--TC--TT-CCAT-CGATAA---A-TTGA---ATTTTGATG--T--TTTTTTTTATT--TTT---ATCATAAA
gi|9 : aGTCGGGTACTGCTAAGAAAAAACGTACTGCAGT-ATA-CCGTAAA--ATTTGAAAAATA-CCATGGT---ATACACATGTA------TACCAC-A--GT-ATAC--CAC---AG-ATTTAATCT-TCAGTAAAA-TGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------GTCGTTTAT--TCCTCA-AA-T-GTAAATAAGAA-AGGGAAAGTATCTTATTTAAA-TTCAT------TTT
gi|9 : gaTT----TGTGATATTTTTTATATTTA--TATTTTTC--CTTTATT-T-AAATTTTACAATCTTTTT-AAGAGTT----ATTG--------------TCGATATTT--GGC-TT--TGTGTA-CCACGG-TACGTACC--AGT-ACAAG---------AAA-A----------------------------AT-----A-C--TGG--TAATA--CCGTGCACCTCgtgatattttttatatttatatttttcctttatttaaattttacaatctttttaagagttattgtcgatatttggctttgtgtaccacggtacgtaccagtacaagaaaaatactggtaataccgtgcacctctactcaatt
blockSeqs : A G GA C CTA CACATGTA G TA T AA CTG T C AAAAA GTTT G G C G C A G TG TA CATG . AA A G G G T G T ATTAATGA C AT T T T AG T AA . TT . TG AATATGGTA . CTAT G C CC GT GTAA C TCTTG C AG AAA T C C C G A A A ATC G TT A A T G C C A GT T AA A AGCTT T C A TTTT TTT TGG TTTTTA . ATA TG T T C G GATA ATTGT C T TA AA G C A AT TA AT C TCA A T ATATACT T AGGCCTAGAT C A TAAC A GAT A A T A T TAAT T A TG G TG C T CA A TTGGGGCAC G CCGGTACAAAATATCCG TA ATTTC C GG TA AT
blockSeqs : . . . . . T . . . . . . . AAAAA . . . . A . . . T . A . . . . . . C T . AT C . T . T . . A . . . A ATATAA . . G . C GT . C T . . TAA . . T . . . . . A . . . . T . A . A . T TG . ATTTA T . . AT . ATT C . . TA A . . . . . . . . . G . . . . T . T . T . T AT . G . A G . . A . T T G . . . . . . . . . . TTGGAAATATACTG . . . . . .
blockSeqs : . . . . . . . . . . . . . ACAA . . . . T . . . . . . . . . . . . T A . AT C . A . . . . A . . . . GAAATA . . G . C GT . C C . . AAA . . T . . . . . . . . . . A . A . A . T TG . CATC . . . A . T . . . AG A . . . . . . . . . G . . . . T . T . T . T AG . A . A C . . A . T T . . . . . . . . . . . CTGGTACACCG . . . . . .
blockSeqs : . . . . . . . . . . . . . AAAA . . . . C . . . . . . . . . . . . T A . AT G . T . . . . . . . . . GAAATA . . G . C GT . G C . . AC . . C . . . . . . . . . . T . C . T . T TA . ATTT . . . T . T . . . TA A . . . . . . . . . G . . . . . . A . A . T AT . A . G G . . A . T T . . . . . . . . . . . CGGTACACCGC . . . . . .
blockSeqs : . . . . . . . . . . . . . AAAA . . . . G . . . . . . . . . . . . C T . AT G . T . . . . . . . . . AAGTA . . G . C GT . A T . . AC . . T . . . . . . . . . . T . A . T . T TA . AATC . . . T . T . . . TA A . . . . . . . . . C . . . . . . T . G . T AG . T . A G . . T . C T . . . . . . . . . . . CCGTACATCG . . . . . .
blockSeqs : . . . . . . . . . . . . . AAAA . . . . T . . . . . . . . . . . . T G . A C . A . . . . . . . . . AATA . . G . C G . C C . . AA . . T . . . . . . . . . . A . A . T . . TG . ATC . . . A . T . . . . C . . . . . . . . . . . . . . . . T . G . . A . C . A G . . T . T T . . . . . . . . . . . CCGGTACAC . . . . . .
blockSeqs : . . . . . . . . . . . . . AAAA . . . . G . . . . . . . . . . . . C T . A G . T . . . . . . . . . TATA . . . . . . . . . . . AA . . A . . . . . . . . . . T . C . T . . T . ATC . . . A . T . . . . . . . . . . . . . . . . . . . . . . . . . . C . . C . . A . T . . . . . . . . . . . . TACTG . . . . . .
blockSeqs : . . . . . . . . . . . . . AAAA . . . . T . . . . . . . . . . . . C T . A C . . . . . . . . . . . A . . . . . . . . . . . AA . . T . . . . . . . . . . . . T . A . . A . ATC . . . A . T . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . CCG . . . . . .
blockSeqs : . . . . . . . . . . . . . AAAA . . . . G . . . . . . . . . . . . . . . A . . . . . AA . . . A . . . . . . . . . . . . . . . . . . . . . . . . . CGG . . . . . .
blockSeqs : . . . . . . . . . . . . . AA . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . A . .
blockSeqs : . . . . . . . .
blockSeqCons : ************** ********** AT****** **** **************** AATA******** ** ** ** T*** CGGTACACCG***********
originalCons : GTTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATCT-TTAGTAAAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------GCTGTTAAT--TCCTCC-AA-T-GTAAATAAAAA-AGAGAAAGTATCTNATTTAAA-TTCAT-----ATTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCTGAACATAAAA-ATA--A-G---AT-ATA--TAA----------------TCTT--ATAC--A-ATA----ACTAT--ACAGC----AGTG-TCT-CCGCATCTTGTCT----ACACGC----AAGTTTTACTCGGG-GTTT--GTCTAAATTG-GCGTAAATGGCAT-TCG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATANTAAATG--TTTTCTTTAATAAAATAG-AAT-A--TC--TT-CCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------TT--CTT---ATCATAAATAATAAATTAATTGTTTTTA-CATA-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTACTGT--TATTAGACATACCTTTGAGTTT-C-ATTACGATGGG--ATGAAG--TA--A-AATAAAGTGAGT--CAC-AGCTTAC-------ATAGGTACTTAT--------ATATAGG-CNTATTATT----TGTGTTTCTCTTGATATTTAATTATTTTTG--CTTTGTT-T-AAATTTNACATTTTTGCT-AAGAGTT---TATTGGACTT-G-AATGTACCGGTATTT--GGC-TT--TGTGTA-CCGCGG-TACGTACC--AGT-ACAAG---------AAA-AGTACCGG---TACA------CCG-G--TAT-----A-C--CGG--TAATA--CCGCGCACCTC
finalCons : GTTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATCT-TTAGTAAAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------GCTGTTAAT--TCCTCC-AA-T-GTAAATAAAAA-AGAGAAAGTATCTNATTTAAA-TTCAT------TTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCTGAACATAAAA-ATA--A-G----T-ATA--TAA----------------TCTT--ATACAATA--------CTAT--ACAGC----AGTG-TCT-CCGCATCTTGTCT----ACACGC----AAGTTTTACTCGGG-GTTT--GTCTAAATTG-GCGTAAATGGCAT-TCG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATANTAAATG--TTTTCTTTAATAAAATAG-AAT-A--TC--TT-CCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------TT--CTT---ATCATAAATAATAAATTAATTGTTTTTA-CATA-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTACTGT--TATTAGACATACCTTTGAGTTT-C-ATTACGATGGG--ATGAAG--TA--A-AATAAAGTGAGT--CAC-AGCTTAC-------ATAGGTACTTAT--------ATATAGG-CNTATTATT----TGTGTTTCTCTTGATATTTAATTATTTTTG--CTTTGTT-T-AAATTTNACATTTTTGCT-AAGAGTTT---ATTGGACTT-G-AATGTACCGGTATTT--GGC-TT--TGTGTA-CCGCGG-TACGTACC--AGT-ACAAG---------AAA-AGTACGGTACACCG-----------G--TAT-----A-C--CGG--TAATA--CCGCGCACCTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TCTACACACTTAGTCATTTTGTTTTAGAGTCTATCTGTAA
Alignments
lowQualScore : 33333333333333 11111 1111 1111111111 2222222 111 111111 222222222222222 11 2222222222 11111 111 111 11111 111111 11111 111111 1111111 2222222222 111111 1111111111 444444444444444444444
lowQualScore : 3 3 44 3 555 00000000000000 2 33 2 33 555 2 2 22222 6666 3 3 3 3 3 3 3 77 44 0000 4444444444 0 55 3 3 3 4 6 5 4 2222222 0 66 2 4 8 222 777 66 222222 777777777777777 00 2222222222 4 777 9999 1 4 55 22 9999 1 33333 4 55 444 4 4 3 4 4 4 4 4 222 4 66 4 4 2 4 1 4 1 66666 5 3 3 4 8 99 99 8 4 4 22222 777 55 55 555555 55 777 11 3 4 4 4 9999 11111 4 4 77 77 2 5 5 66 888888 5 777 5 6 6666666 2 1111111111 5 1 9999 55 777 4 4 1 2 3 888888 7 3 55 3 44 3 3 44 3 4444444444 3 0 666666666666666666666 3 44 88888 3 44 44 44
lowQualScore : . . .. . ... .............. . .. . .. ... . . ..... .... . . . . . . . .. .. .... .......... . .. . . . . . . . ....... . .. . . . ... ... .. ...... ............... .. .......... . ... .... . . .. .. .... . ..... . .. ... . . . . . . . . ... . .. . . . . . . . ..... . . . . . .. .. . . . ..... ... .. .. ...... .. ... .. . . . . .... ..... . . .. .. . . . .. ...... . ... . . ....... . .......... . . .... .. ... . . . . . ...... . . .. . .. . . .. . .......... . . ..................... . .. ..... . .. .. ..
lowQualScore : 6 3 66 3 888 00000000000000 9 99 9 99 000 9 9 44444 5555 1 3 3 8 3 3 3 99 66 4444 6666666666 5 00 6 6 6 0 4 8 0 1111111 1 11 2 4 0 555 888 11 888888 888888888888888 66 6666666666 4 888 4444 1 4 66 99 4444 1 11111 0 55 777 0 4 4 4 4 4 4 4 222 4 11 4 4 2 4 9 4 0 44444 6 2 3 0 0 55 55 0 0 0 22222 000 55 55 555555 55 000 00 4 4 4 4 4444 11111 4 4 99 99 5 0 0 99 666666 0 222 0 4 2222222 0 4444444444 0 0 4444 33 222 4 4 0 2 6 555555 3 6 00 3 66 3 3 66 3 6666666666 3 4 333333333333333333333 3 66 33333 3 66 66 66
consensus : GTTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATCT-TTAGTAAAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------GCTGTTAAT--TCCTCC-AA-T-GTAAATAAAAA-AGAGAAAGTATCTNATTTAAA-TTCAT------TTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCTGAACATAAAA-ATAAG---TA---TA--T------AATC---------------TT--ATAC--A-A-----T-ACT---ATACAGC----AGTG-TCT-CCGCATCTTGTCT----ACACGC----AAGTTTTACTCGGG-GTTT--GTCTAAATTG-GCGTAAATGGCAT-TCG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATANTAAATG--TTTTCTTTAATAAAATAG-AAT-A--TC--TT-CCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------TT--CTT---ATCATAAATAATAAATTAATTGTTTTTA-CATA-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTACTGT--TATTAGACATACCTTTGAGTTT-C-ATTACGATGGG--ATGAAG--TA--A-AATAAAGTGAGT--CAC-AGCTTAC-------ATAGGTACTTAT--------ATATAGG-CNTATTATT----TGTGTTTCTCTTGATATTTAATTATTTTTG--CTTTGTT-T-AAATTTNACATTTTTGCT-AAGAGTT---TATTGGACTT-G-AATGTACCGGTATTT--GGC-TT--TGTGTA-CCGCGG-TACGTACC--AGT-ACAAG----------AAA-AGTA-C-GG---TACA------CCG-G--TAT-----A-C--CGG--TAATA--CCGCGCACCTC
Reference ( family-281 ) : GTTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATCT-TTAGTAAAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------GCTGTTAAT--TCCTCC-AA-T-GTAAATAAAAA-AGAGAAAGTATCTNATTTAAA-TTCAT------TTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCTGAACATAAAA-ATAAG---TA---TA--T------AATC---------------TT--ATAC--A-A-----T-ACT---ATACAGC----AGTG-TCT-CCGCATCTTGTCT----ACACGC----AAGTTTTACTCGGG-GTTT--GTCTAAATTG-GCGTAAATGGCAT-TCG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATANTAAATG--TTTTCTTTAATAAAATAG-AAT-A--TC--TT-CCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------TT--CTT---ATCATAAATAATAAATTAATTGTTTTTA-CATA-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTACTGT--TATTAGACATACCTTTGAGTTT-C-ATTACGATGGG--ATGAAG--TA--A-AATAAAGTGAGT--CAC-AGCTTAC-------ATAGGTACTTAT--------ATATAGG-CNTATTATT----TGTGTTTCTCTTGATATTTAATTATTTTTG--CTTTGTT-T-AAATTTNACATTTTTGCT-AAGAGTT---TATTGGACTT-G-AATGTACCGGTATTT--GGC-TT--TGTGTA-CCGCGG-TACGTACC--AGT-ACAAG----------AAA-AGTA-C-GG---TACA------CCG-G--TAT-----A-C--CGG--TAATA--CCGCGCACCTC
gi|1 : TTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ATATACCCGGGGGTATATACCAC-G--GT-ATAC--CGC---AG-ATTTAATGA-TTAGTAGAT-TGAC----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CACTATTAATCAGCTGTTAAT--TCCTCC-AA-T-GCAAATAAAAA-AGAAAAAGTATTTGATTTAAA-TTGAT------TTTCTA----TCTGTGACAAAACTAAAG-TTTATTCTGAACATAAAA-ATAAG---TA---TA--TGATATAAATCATACAGTACCAATTTTT--ATAC--A-A-----T-ACTTATGTACAGC----AGTG-TCT-CCGCATCTTTTCA----ACATGC----AAGTTTTACTCGGG-GTTT--GTCTAA-TTG-GCGTAAATGGCAT-TTG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATATTAAATG--TTTTCTT-AATAAAACAG-AAT-A--TCA-TT-CCAA-TGAT-A---A-TTTA---ATTTTAATG--T--GTT------TTATTTT---ATCATTAATAATAAATTAATTGTTTTTA-CATG-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTGCTGT--TATTAGACATACCTTTGAGTTT-C-ATTACGATGGG--ATGAAGTATA--A-AATAGAGTGAGT--CAC-AGCTCAC-------ACAGGTACTTAT--------ATATAGG-CATATTATT----TGTGTTTTTCTCGATATTTAA-TATTTTTG--CTTTGTT-T-AAATTTTACA-TTTTGCT-AAGAG-T---TATTGGACTT-G-AATGTACC-GTATTT--GGC-TT--TGTGTA-CCGCGA-TACGTACC--AGT--CAAA----------AAA-AGTA-----------A------CCG-G--TAT-----A-C--CGG--TAATA--CCGCGC
gi|10 : GCTTTAA-CGTACTGTAA-TT----CATA-----CG-TTTACCC-TTAGAGGCTATT--GTACTGT--TATTAGACATACCTTTGAGTTT-C-ATTACGATGGG--ATGAAG--TAT-ACAATAAAGTGAGT--CAC-TGCTTAC-------ATAGGTACTTAT--------ATATAGG-CATATTATT----TGTGTTTCTCTTGATATTTAATTACTTTTG--CTTTGTT-T-AAATTTTACATTTTTGCT-AAGAG-T---TATTGGACTT-G-AATGTACCGGTATTT--GGC-TT--TGTGTA-CCGCGG-TACGTACC--ATT-ACAAG----------AAA-AGTA-CTGG---TACA------CCG-GTATAT-----A-C--CGG--TAATA--CCGCACACCTC
gi|11 : GTTGTGTACCGCGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAC--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAC-G--GT-ATAC--CGC---AGTATATA--CC----------ACGGTGTTTTTTAGTAT-TATCGTTT-TT-----GTGATTT-AT-T-GCATA--TA--AT----CA----------GCTGTTAAT--TCCTCC-AA-T-GTAAATAAGGA-AGAGAAAGTATTTGATTTAAA-TTCA-------TTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCTGAACATAACA-ATAAA---T
gi|12 : gaCATACCTTT-------C-ATTACGATGGG--AGGAAG--TA--A-A-----GTGAGT--CAC-AGC---------------GTA-TTAT--------AGATAGG-CGTACTATT----TGTGATTATCTCGATATTTA--T-TTTTTGATTTTTTTT-T-AAATTAAATAATTCTATT-AAGAGTT----ATTGGACTT-G-AATATACCGGTATTT--GTC-TT--TGAGTA-CCGCGG-TACGTTCC--GAT-ACAAG----------AAA-A-------------TA------CTG-G--TAT-----A-C--CGG--TAATA--CCGCGCATCTC
gi|13 : A--------------TACCAT-G--GT-ATAC--CGC---AG-ATTTAATCT-TTGGTACAA-TGAT----TCTATTAT-TATCGTTT-GT-AGCTGTAATTT-AT-T-GCATA--TA--ATCATGCA----------GCCGTGTAT--TCCTCC-AT-T-GTAAAT-AAAA-AGGGAAAGTATCTTATTTAA
gi|14 : cGG-GTTT--GTCTAC-TTG-GTGGAAATGGTAT-TCG-ACCT-GGG-TAAAC-------------AT-A--AAAT-ATCT-ATAATAT-ATCT-GATGATA--------------------------AT-A--TT--TT-C----------------TTA---ATTTTGATA--T--GTT------TT--CTT---ATCATATATGATAAATTTATTGTTTTT
gi|15 : TTGGGTACCGCGAAGAAAAAACGTACCGCGGT-ATAGCCGTGAT--ATTTGAAAAATACCCGCGGT---ATAT-------------TACCACGG--GT-ATAC--CGC---AG-ATTTAATC--TAAGT-AAAACGAT----TCCATTAT-TATCGT
gi|16 : TGTT-AAGAGTT----ATCAGACTTTG-AATGTACTGGTA----------T--CATGTA-TCACAG-TACATACA--TGTAACAGGTTGGGGCACAGAA-ATTT-T-GGAAATATA------CTG-G--CAT-----A-A--CAA--TAATA--CCGCACACC
gi|17 : CGTGAAGAAAAAACGTACCGCGGT-ATA-CCACAAT--ATTTGAAAAATA-CCACGGT---ACA--------------TACCAT-GTAGT-ATTC--CGC---AG-ATTTAATCT-TTAGT-AAAACGAT----T
gi|18 : CT-AAGAGTT----ATTGGACTT-G-AATATACCGGTATTT--GGT-TT--TGTGTA-CCGCGG-TACGAATC--AGA-ACTAG----------AAA-AGT------------A------CCG-G--TAT-----A-C--CGG--TAATG--CCACACAC
gi|19 : AACATAAAA-GCAAG---TA---TA--T------AATC---------------TT--ATAC--A--------------------GC----AGTG-TCT---GCATCTTGTCT----ACACGT----AAGTTTTACTTGGG-GTTT--GTCT-ACTTG-GCGTAAATG
gi|2 : GTTGGGTACCACGAAGAAAAAACGCACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ACA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATTT-TTAGCAAAAACGAT----TCCATTAT-T---GTTT-TT-AGTTGCTATTT-AT-T-GCATA--TA--AT----CA----------ACTGTTAAT--TCCTCC-AA-T-GTAAATAAAAG-AGAGAACGTATTTAATTTAAA-TTCATTAATGATTTTCAAA--TCTGTGACAGAACTAAAG-TTTATTCT-AACATACAA-GTAAGAGATA---TA--T------AATC---------------TT--ATAC--ATA-----TAACT---ATACAGC----AGTG-TCT-CTGCATCTTGTCT----ACACGC----AAGTTTTACTCGGG-TTTT--GTCTAAATTG-GCGTAAAT-GCAT-TTG-ACCT-GGG-GAAAC-C-AT---TCAACAT-A--AAAT-ATTT-ATAATCT-ACAT-GATAATAAA-G--TTTTCTTTAAAAAAATAG-AAT-A--TC--TT-CCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------TT--TTT---ATCATAAATAAGAAATTAATTGTTTTAA-CGGA-TGTAA-TT----CATA-----CG-TTTGTCC-TAAGAGGCTA-T--GTAC-G---TATTAGACATACCTTTGAGTTT-C-ATTACGAT-GG--ATGAAG--TA--A-AATAAAGTGAG---CACAAGCTTAC-------ATAGGTACTTAT--------A-ATAGG-CATATTATT----TGTGTTTCTCTTGATATTTAATTATTTTC---CTTTGTT-T-AAATTTAACATTTTTGCT-AAGAGTT---TATTGAGCTT-GAAATATACCGGTATTT--GGC-TT--TCTGTA-CCGCGG-TACGTACC--AGT-ACAAA----------AAA-AGTACC-GG---TACA------C---G--TATATTTCA-C--CAGTATAATAATCCGTGCATCTC
gi|20 : TA-TCGTGTT--ATTTGCAAATTA-CTGGAGT---ATA--------------TAACAC-G--GT-ATAC--CAC---AG-ATTTAGTAT-T
gi|21 : agctgcgttatctgaaaaaaaaaaag--------------TATCAC-G--GTTATAT--CGCCTGAG-ATTCAATTT---------AAC--------TCATTA---ATCATTT-TT-AGTTGGCATTT-AT-T-G-ATAT-TA--AC----CA----------GCTGTatca
gi|22 : C-TT--TCTGTA-CCACGG-TACGTACC--AGT-ACAAA----------AAA-AGTA-C-G----------------G-G--TAT-----A-C--TGA--TTATA--CTGCGCACATC
gi|23 : --TTTTCTT-AATGAAATAG-AAT-A--TC--TTTCCAA-TGAT-A---T-TTTTTTTATTTTGATA--T--GTT------TT--CTT---ATCAT
gi|24 : T-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCCT---TA--AT----TA----------GCTGTTAAT--TCCTCC-AAGT-GTAAA
gi|26 : TGTTTTTA-CCTG-TGTAA-TT----CATA-----CG-TTTACCC-TTAGAGG
gi|3 : GTTGG-TACGGCGAAGAAAAAGCGTACCGCGGTAATA-CCG-GATGAATTTGAAAAATA-CCGCGGT---ACA--------------TACC-C-G--GT-ATATAACGC---AG-ATTTAATTTCTTAGTA------------------AT-TATCGTTT-TT-GCTTGTTATTTCAT-TGGCATA--TA--AT----CA----------ACTGTTAATAATCCTCCAAA-TGGTAAATAAAAG-AGAGAAACTATTTAATTTAAATTTCAT------CTTTCAAA--TC-GTGACAGAACCAAAG-TTTATTCTGAACATAAAA-ATAAT---TA---TA--T------AATC---------------TT--ATACGAA-A-----T-ACT---ATACAGC----A--G-TCT-CTGCACTATGTCT----ACACGC----AAGTTTTACTCGGG-GTTT--G-CTTAATTG-GCGTAAAT-GCCT-TTG-ACCTGGGG-GAAACAC-AT---TCAACATGA--AAAT-ATTTAAAAATCT-ACAT-GATAATAAATGGTTTTTCTTTA--AAAATAGAAAT-AGCTT--TT-CCATCTGAT-A---ATTTTA---ATTTTGATG--TGGGTT------TT--TTT------------------TT-----TTTTT---ATA-TGTAAGTT----CATA-----CG-TTTGCCC-TTAGAGGCTATT--GTACTGT--TA-TATACATATATTTGAGTTT-CAATTACGATGGG--ATGAAG--TAATA-AAAAAAGTGAGTCACAC-AGCTTAC-------ATAGGTACTTAT--------ATATAGG-CATA-TATT----TGTGTTTCTCTTGATATTTAATTATTTTCC--TTTTGTT-TAAAATTTAACATTTTTGCTAAAGAGCT---T-TTGGACTT-G-AATGTACCGGTATTTTGGGC-TT--C-TGTA-CCGCGG-T-CGTACCCAAGT-ACAA-----------AAA-AGTACC-GG---TACAAAATATCCG-G--TAT-----ACC--CGG--TAATA--CCGCGCACCTC
gi|4 : GTTGGGTACCGCGAAGACACAACGTA--GCGGT-TTA-CCGTA-T--ATTTGAAATACG-CCA-GGTCTAATA---------------ACCAC-G--CT-ATAC--CGC---AG-ATT-AATAT-ATAGTAAAA-TGAT----TCTATTAT-TAT-GTGGGTT-AGTTGT-ATTT-ATAT-GCATA--TATAATA---CA----------GCCGTTTAC--TTCTTC-CA-T-GTACATCAAAA-AAGGAAAGCATCT-ATCTAA--TTCAT------TTTTGAAAATTCAGTG-CAGAACAAAA---TTATTCTGA-CATAAAATATA-G---TAATCTA--T------AATC---------------TTTGATACGAA-A-----T-ACT---ATACGGCCTATAGTGCTCT-CCGCATATTGTCT----AGATATCTTGAAGTTTTACTCGGG-GTTTAGGTCAAAAG-G-GCGGAAATGGTAT-TCA-ACCT-GGGATAAAC-C-ATATCTCAACAT-ATTAATC-ATTT-G-AATCTGACCT--ATATGAA-----TTTTTTTTAATGAAATAG-AATCA--TC--TT-TCAT-TGAT-T---T-TTTA-----TTTAATAATT--ATTC-----TT--CTT---ATCATAAAAGATAGATTATTAGTTTTTA-CAC--TGTAC-TTGATACATAATTGTCGCTTCACCCTTTAGAGGC-ATTTAGTACTGT--TATT-GACACACC-------TT-C-ATT----TGCG----------------AATAAAGTGAGA--TAC-AGCATAC-------A-----ACTAAC-----------TAGGCCTTATCATC----T-TGCTGTTCTT----TGTAGTTATGTCTG--CTATGTTAT-ACATTTTACATTTATGCT-AA-AG-----TATTGTACTT-G-AATGTACCGGTA-TT--GTCGTT--TGTGTACCCGCGGTTACGTACC---GT-ACAAG----------AAAGAGTA-C-GG---TACA------CCGCG--TAT-----A-CGGCGG--TAATA--CCGGCCACC
gi|5 : aTTGGGTACCGCGAAGAAAAAA--TACCGTGGT-ATA-CCGTAAT--AGTTGAAAAATA-CCGCGGT---ACA--------------TACCAC-G--GT-ATAC--CGC---AG-ATTTAATCT-TTAGC-AAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATATGTA--AT----CA----------GCTGTTAAT--TCCACC-AA-T-GTAAATAAAAAGAGAGAAAGTATTTTATTTAAA-TTCA-------TTTTGAAA--TCTGTGACAGAACTAAAG-TTT-------------AA-ATAAG---TA---TA--A------AATC---------------TT--ATAC--A-ATATGGT-ACT---ATACAGC----AGTG-TCT---GCATTTTGTCT----AAACTT----AAGTTTTACTCGGG-GTTT--GTCT-AATTG-GCGCAAATGGCAT-TTG-ACCT-GGG-TAAAC-C-AT---TCAACAT-G--AAAT-ATTT-ATAATCT-ACAT-GATATTAAATG--TTTTC-TTAATAAAATAG-AAT-A--TTTATT-CCAT-TGAT-A---A-TTTA---A-TTTGATG--T--GTT------TT--CTT---ATC--------------AATTGTTTTTA-CATA-TGTAA-TT----CATA-----TG-TTTACCC-TTAGAGGCTATT--GTACTGTAATATTAAACATACCTTTGAGTTT-C-ATTACAATGGG--ATGAAGTATA--A-AATAAAGTGAGT--CAC-AGCGTACATATACTATAGGTACTTATAGGCCTAGATATATG-CCTATTATTTAACTGTGTTTCTCTTGATATTTAATTATTTTTG--CTTTGTT-T-ATATTTTACATTTTTGCT-AGGAGTTTAATATTGGACTT-G-AATGTAGCGGTATTT--GGC-TT--TGTGTA-CCGCAG-TACGTACC--AGT-ACTAG----------AAA-AG-----------------------------T-----A-C--CGG--TAATA--CCGCGCACC
gi|6 : GGAAGTAT-TGATTTAAA-TTCAT------TTT-CAAA--TCT-TGACAGAACTAAAG-TTTATTCTGAACATAAAA--TAAG---TA---TA--T------AAT----------------TT--ATAC--A-A-----T-ACT---ATACAGC----A-TG-TCT-CCGCATCT-------------------AAGTTTTACTCGGG-GTTT--GTCTAA-TTG-GCGTAAATGGCAT-TTG-ACCT-GGG-TAAAC-C-AT---TCAACAT-A--AA-T-ATTT-ATAATCT-ACAT-GATATTAAATG--GTTC--TTAATAAAATAG-TAT-A--TC--TTTCCAT-TGAT-A---A-TTTA---ATTTTGATG--T--GTT------TT--C-T---ATCATAAATAATAAATTAATTGTTTTTATTATA-TGTAA-TT----CATA-----CG-TTTACCC-CTAGAGGCTATT--GTACTGT--TATTAGACATACCTTTCAGTTTCC-ATTACGATGGGATATGAAG--TAT-A-AATAAAGTGAGT--CAC-AGCGTAC-------ATAGGTACTTAT--------AGATAGG-CCTATTATT----CA-GTTTCTCTTGATATTTAATTATTTTTG--CTTTGTT-T-AAATCTAACATTTTTGCT-AAGAG-T---TATTGGACTTGG-AATGTACCGGTATTT--GGG-TTTGTGTGTA-CCGCGG-TACGTACC--AGT-ACAAG----------AAA-AGTA-C-CG---TACA------TCG-G--TAT-----A-C--CGG--TAATA--CCGTGCAACT
gi|7 : TTGGGTACCGCGAAGAAAAAACGCACCGTGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ATA--------------TACCAA-G--GT-ATAC--AGC---AG-ATTTAATCT-TTAGC-AAAACGAT----TCCATGATGTATCGTTT-TTCAGTTGATATTT-AC-T-GCATA--TA--TT----CA----------GCGGTTTTT--TCCTCC-AA-T-GTAAATAAAAA-AGGGAAAAAATCTTATTTAAA-TTCA-------TTTTGAAA--TCAGTGA-AGAACAAAAG-TTTATTCTGAACATAAAA-ATAAG----A---TA--T------AATC---------------TTA-ATAC--T-A-----T-A-T---ATACAGT----AGTG-TCT-CCTCATCTT----------ACG---------------CGGG-GTTT--GAAT-AATTG-GCGGAAATGGTAT-TAG-ACCT-GGG-TAAAT-C-AT---TAAACAT-A--AAAT-ATTT-AAAATCT-ATCT-GATATTAAATG--CATTC-TTAATGAATTAG-AAT-AT-TT--TT-CCAT-TGAC-ATTTT-TTTT---ATTTTGATA--T--GTT------TT--CTTATAATCATAAATAATAAATTCATTCTTTTCA-CACA-TGTAC-TT----CATA-----CA-TTCACCC-TTAGAG
gi|8 : GTTTGGTACCACGAAGAAAAAACGTACCGCGGT-ATA-CCGTAAT--ATTTGAAAAATA-CCGCGGT---ACA--------------TACCAC-A--GT-ATAC--CGC---AG-ATTTAATTT-TCAGTAAAAACGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------ACTGTTAAT--TCCTCC-TA-T-GTAAATAAAAG-AGAGAAAGTAT---ATTTAAG-TTCA-------TCTTCAAA--TCTGTGACAGAACTAAAGTTTTATGC-GAACATAAAATAAAAGAA-TA---TATTT------AATC---------------TT--ATAC--A-AG----T-ACT---ATACAGC----AG-G-TCTCCCGCATCTTG-CTGTAAACACGC-----AGTTTTACTCGGGCGTTT--GTCTAA--TGTGCGTAAATGGCATCTTGCACCT-GGG-GAAAC-CAATA--TCAAAAT-A--AAATAATTT-ATAATCT-ACTTCGATAATAAGTT--TTTTCTTTAA-AAATTTG-AATAA--TC--TT-CCAT-CGATAA---A-TTGA---ATTTTGATG--T--TTTTTTTTATT--TTT---ATCATAAA
gi|9 : aGTCGGGTACTGCTAAGAAAAAACGTACTGCAGT-ATA-CCGTAAA--ATTTGAAAAATA-CCATGGT---ATACACATGTA------TACCAC-A--GT-ATAC--CAC---AG-ATTTAATCT-TCAGTAAAA-TGAT----TCCATTAT-TATCGTTT-TT-AGTTGTGATTT-AT-T-GCATA--TA--AT----CA----------GTCGTTTAT--TCCTCA-AA-T-GTAAATAAGAA-AGGGAAAGTATCTTATTTAAA-TTCAT------TTT
gi|9 : gaTT----TGTGATATTTTTTATATTTA--TATTTTTC--CTTTATT-T-AAATTTTACAATCTTTTT-AAGAGTT----ATTG--------------TCGATATTT--GGC-TT--TGTGTA-CCACGG-TACGTACC--AGT-ACAAG----------AAA-A-----------------------------AT-----A-C--TGG--TAATA--CCGTGCACCTCgtgatattttttatatttatatttttcctttatttaaattttacaatctttttaagagttattgtcgatatttggctttgtgtaccacggtacgtaccagtacaagaaaaatactggtaataccgtgcacctctactcaatt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TCTACACACTTAGTCATTTTGTTTTAGAGTCTATCTGTAA