lowQualScore : 1111111
lowQualScore : 1 2 1 55 3333333 111 222222222 222222 2 333333333 2222 0000000 1 2 33333333 3333333 1 22 2222222 3333333333 22 11 222222 1 11 2 1 555555555555 1 22 1 22 222 111 11 2222 44444444 222 11111111 4444444444 2222 3333333333333333333333333333 33 3333333 22 111111 3 111 3
lowQualScore : 5 3 6 0 7 00 3 7777777 444 222222222 8 3 8 333333 8 8 8 0 88 999999999 0000 5555555 3 6 99999999 3 4444444 0 0 6 33 0 8 8 6 6666666 0 8 2 7777777777 44 8 11 222222 0 3 4 33 6 3 000000000000 3 00 3 0 3 8 11 8 8 6 5 8 1 3 444 111 3 00 1111 99999999 5 222 5 4 66666666 777 3333333333 2 0000 1 66 2 9999999999999999999999999999 4 4 4 33 1 0000000 66 55 111111 7 444 6 2
lowQualScore : . . . . . .. . ....... ... ......... . . . ...... . . . . .. ......... .... ....... . . ........ . ....... . . . .. . . . . ....... . . . .......... .. . .. ...... . . . .. . . ............ . .. . . . . .. . . . . . . . ... ... . .. .... ........ . ... . . ........ ... .......... . .... . .. . ............................ . . . .. . ....... .. .. ...... . ... . .
lowQualScore : 0 0 0 0 0 55 8 2222222 000 888888888 0 2 0 000000 0 0 0 0 33 777777777 7777 0000000 3 7 44444444 2 5555555 8 8 5 66 6 0 0 0 0000000 8 0 8 2222222222 22 0 00 222222 0 2 0 55 7 3 000000000000 3 33 2 0 2 0 22 0 0 0 0 0 4 8 333 333 3 00 7777 99999999 0 999 7 4 11111111 888 1111111111 9 3333 9 11 4 6666666666666666666666666666 0 0 0 55 3 3333333 11 55 555555 2 555 9 2
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAAGTCCANTTTTAGGCATTCCAGAACATCN-ACAGGCTTGCCTCTGTCTC-T-----CAT---AAAA-TC--G--CC-GCGCAGT-TT------TATA-CTAAAATTCATCGCATG-TTTAG-TTTTCTTGGGACATTA--TAGATGTCGGTCCCTAAATAAAGCTGGTTCGTCGGT-CCCGAAACGATTAGGCN------ACTCATATTTT----CGTTTCCGATTCAGACGAATGACATTCACATTGACGTCACAAACGTTT-CCAAT-GACGTTGGTTGCTTAC-------TAATCAA-TATTGAGAACTTTT--ACGGCGATATAAGGCCT-ATC--TAT----T-GCTTTTCAGAGT-AATCANCCAN-AGAATGCTTCACAATTT-ACCAGC--TTACA--TAAA-AAGTTG-ATTTTAAATTCTT-AAAA-CGGGT-AT-TTAG-AACTGGAGGCCAATG-TTAACTTTATAATAAAAA-TTAAC-G-ACNCAA-TGCTCGNGGGCCTGCGTAGCTCAG-TC--GGTAA-CGCTCC-GGACCTCCAACCGCGA-CGTCGTGAGT--------TCGACTCCCCG---CG-T-GGCGT-NAACACAAATTTTA-T--TTCTTCACGTA--TTTC------GG-C--ATAGTGC--TATAGT-AC-TATTT-CGGCA-TA-GTGCACGGTCGCTA-CATAAATTCAT-AGAACACTATGCGA--AAATGGTGGAA------TAGTGATTA-TATAGNGAGAAGCTA-ACAGGAAGCATAATA
Reference ( gi|1 ) : TAAATACATTCTTCATGATTAAATCTATTGCTAATTTCATCATCTTGATATATGTATAATTATATATTAATATAATAATGCTACATTTTGAGTTACTATGCCAAAGATAGTATCAGGGTTTTGACGCAATGGTCCACGAGCCGAAGGCAAGTGGACTAATGCGTCAAAAACCCTGACTACTATTTCAAATTGGCATAGTACACGCAAAATGTAACATTTATTATTATTATTGCTTGAGTGTCCATAATGTGCATTAAAAATACCACCACTTTGATTGAGGCGAAGTCCATTTTCAG-TATTTTAATACATCGGACAGGCTTGCCTCTGTCTCGT-----CAT---AAAA-TC--G--CC-GCGCAGT-TT------TATA-CTAAAATTCATCGCATG-TTTAG-TTT-CTTGGAACATTAATTAGATGTCCGGCCCTAAATA-----GTTTCGTCAGT-CC-GAAACGATTAGGTT------ACTCATATTTT----TGTTTCTGAATCAGACGAATGACATTCACATTGACGTCACAAACGTTT-CCAAT-GATGTTGGTTGCTTAC-------TAATCAA-TACTGAAAAC--TT--ACGGCGATATAAGGCCT-ATC--TAT----T-GCTTTTCAGAGT-AATCAATCAA-AGAATGCTT-ACAATTT-ACCAGCAATTACAA-TAAA-AAGTTT-ATTTTAAATTCTT-AAAA-CGGGG-AT-TTAG-AACTAGAGGCCAATG-TTAACTTTATAATAAAAA-T-AAC-G-ACTCAG-TGCTTGTAGGCCTGCGTAGCTCA--TC--G-TAA-CGCTCC-G-ACCGCCAACCGCGA-CGTCGTGAGT--------TCGACTCCCCG---CGTTCGCCGT-TAACACAAATTTTATT--TTCTTCACGTA--TTTC------GG-G--ATAGTGC--TATAGT-AC-TATTT-CGGCA-T--GTGCACGGTCGC-A-CATTAATTCATAAGAACACTATGCGA--AAATGGTGGAA------TAGTGATTAGTATAGGAGGAAGCTAGATAGGAAGCATAATA
gi|13 : GCCAAGTCCAGTTTTAGGCATTTCAGAATATCA-ACAGGCTTGCCCCTGTC-CAT-----AATGAGAAGG-TCCAGTTCCAGCGAGGCGTT------CATG-CTAAAATTCATAGCATGTTTTAG-T
gi|5 : caTTTTTAG-TATTCTAAAACATCC-ACAGGCTTGTCTCTGTCTC-T-----CAT---AAAA-TC--G--CC-GCGCAGT-TT------TATA-CTGAAATTCATCGCATG-TTTAGTTTT-CTTGGGAC----ATTAGATGTCGGTCCATAAATAAAGCTGGTTCGTCAGTCCC-GAAACGATTAGGCA------ACTCAGA-TTT----CGTTCCCGATTCAGATGAATGACA-TCACCTTGACGTCACCAACGTTT-CCAAT-GACGTTGG
gi|2 : actatttcggcatagtgcacggtcgctacataaatccagagannnnnnnnnnnnnnnnnnnnnnnnngtACAGGCTTGCCTCTGTCTC-T-----CAT---AAA------------------T-TT------TATA-CTAAAATTGATCGCATG-TTTAG-TTTTCTTGGA-CATTA--TA--TGTTGGTCCCTAAATAAAGCTGGTTCTTCGGT-CCCGAAACGATTAGGCT------ACTCATATT-----------------CAAACGAAAGACAT-CACATGAACGTCA--AACGTTTTCCAATCGACGTTGGTTGCTTAC-------TACTT---TACCGG-----------CG-CGATATA-GGCCT-ATCCTTAT----TTGCTTTTCAGAGTGAATCAATCTATGGAATGTTT-ACAATTTTACCAGCA-TTACAAATAAACAAGTTTGACTTTAAAT-CTT-AAAA-CGGAATATGTTAG-AACTGGAG--CAATGGTTAACTTTAAAATAAAAA-TTAAC-G-ACTCAGGTACTCAT-GGCCTGCGTAGCTCAG-TC--GGTAAACGCTCC-GGACCGCCA-CCGCGA-CGTCGTGAGT--------TCGACTCCCCG---T---------------CAAATTTTTCTAATTCTTCACGTAATCTTC------GG-GCAATAGTGCA-TA-AGTAAC-TATTTCCGGCA-TACGTGCACGG----------------------ACACTATGCGA--AAATGGTGGAA------TAGTGATTA-TATCGGGAGAAGCTA-ACAGGAAGCATAAT
gi|8 : tcaAGGCTTGTCTTTGTCTC-T-----CAT---AAAA-TC--G--CC-GCGCAGT-TTAACTTTTATA-CTGAAATTCATCGCATG-TTTAG-TTTTCTTGGGACATTA----GATGTTGGTCCCTAAATAAAGCTGGTTCGTCAGT-CCCGAAACGATTAGGCCTAGGCAACTCATATTTT-----GTTTCTGATTCAGACGAATGACAT-CACATTGACGTCACAAACGTTT-CCAAT-GACGCTGGTTGCTTAC-------TAATCAA-TATTGAGAACTTTT--ACGGCAATAT-AGGCCT-ATC--T
gi|15 : AGGTTTGCTTCTGTTCCGCTGTCCCTT---AAAACTC--A--CC-GAGTATT-TC------CGTAACTAAAATTGATGACATG-TTTAG-TTT-CTTG
gi|3 : ccatcatactaagtt------ACTCATATTTTAATTTGTTTCTGATTCAGACGAATGACAT-CACATTGACGTCACAAACGTTT-CCAAT-GACGTTGGTTGCTTAC-------TAATCAA-TATTGAGAACTTTT--ACGGCGATAT-AGGCCT-ATC--TAT----T-GCTTTTCAGAGT-AATCATCTAT-AGAATGCTTCACAATTC-ACAAGC-ATTACAT-TAAA-AAGTTG-ATTTTAAATTCTTAAAAA-TGGGT-AT-TTAGAAACTGGAGG-CAATG-TTCACTTTATA--AAAAA-T-TAC-A-GCTCAA-TGCTCATTGGCCTGTGTAGCTCAG-TCG-G-TAA--GTTCG-G-ACCA-CAACCGCGA-CGTCGTGAGT--------T-GACTCCCTG---CGTT-GGCGT-TAACACAAATTTTA-T--TTCTTCACGTA--TCTCCCATCTGGTG--GT-GTGCAGTATAGT-CCATAATT-CGGCA-TA-GTTGA-GGTTGCTA-CATAAATTCAT-AGAACAATATGC-A--GAATGGTGAAA------TAGTGATTA-TATAGAGAGAAGCTA-ACAGGAAGCATAAT
gi|4 : acaTCACATTGACGTCACAAATGTTT-CCAAT-TACGTTGATTGCTTAC-------TAATCAAATATTGAAATC--TTTTACGGCGATCTAGGGC-T-ATT--TAT----T-GTTTTTCAAAGT-AATCATCTAC-AGAATGCTTTACAATTT-ACC------------TAAA-AAGTTG-GTATTAAACTCTT-A----------------G-AACTGGAGGCCAATA-TTAACTATATTATAAAAA-TTAAC-A-ACATAA-TGCTCAAAGGCCTGCATAGCTCAG-TC--GGTAA-CGCTCC-GGACCTCCAATCGCGA-CGTCGTGAGA--------TCGACTCACTG---CGTCGGCC-T-AAACACAAATTTTATT--T-CTTCATGTA--TTTC------GG-C--ATACTAT--CATAGC-AC-TATTT-CGGCA-TA-GTGCACGGTCGCGA-TACAAATTCAT-AGAACACTATGCGA--AAATGGTGCAA------TAGTG
gi|14 : caTGGTTGCTTACTAGTTACTAATCAA-TATTGAGAACTTTT--ACAGCGATAT-AGGCCTCATC--TACAGAAT-GCTTTACAATTT-A--CAATCAA-
gi|7 : TCTT-AAAAACTGGT-AT-TTAA-AACTGGAGGCCAATG-TTAACTATATAATAAAAATT-TAC-G-ACTCAA-TGTTCATGGGCCTGAGTAGCTCAG-TCG-G-TAA-CGCTCCAA-ACCTCCAATTGCAA-CGTCGTGAGA--------TCGACTCCCCG---CGGT-GGCGT-TAGAATAGATTTTAAT--TTCTCCACGTA--TTTC------GG-C--ATA---C--CATATT-AC-TATTT-CGACATT--ATGCGC-----T-A-TATGAATTCAT-AGAAGAATATGCGA--AAATGGTGGAA------TAGTGATTA-TATAGctcgctgtaatgaagttctttttag
gi|6 : -CGGGT-AT-TTAG-AACTGAGGGCTAATG-TTAACTTTATAGTAAAGATT-AAC-A-ACGTAA-TGCTCGAGGGTCTGCGTAGCTCA--TTCAG-TAA-CGTTCCGG-ACATCCAACAGCAA-CGTCTTCAGT--------TCGACTCCTCG---CA-ACGGCGTAGAAAAAAAATGTTA-T--TTATTCCTGTA--TGCC---------------GTGC---------AC-TATTT-CAGCA-TA-ATGCATGGTCGCTA-TATAAATTTAT-AGAACACTATGCGA--AAATGA-GGAGTATATCTAGTGATTATT-TAGCGAGAAGCTA-ACAGGAAGCATAATAttaga
gi|9 : AAAAA-TTAACCGCACGTAA-TGCTCGAGGGTCCGCGTAGCTCAA-TC--GGCAC-CGCTCC-GGACCTTCAACCGCGAATGTCGTGAGT--------TCGACT-CCCG---TGGT-GTTAT-TAAAAT-ACTCTTA----ATCTTCCCATA--TCCCTT----GA-G--AT-------TAT--T-TG-TAATC-GGGCA--------ACGGCCGC-ATTATAAATTAAGTAGAACGCTATGCGA--ATTTGTCTTAG------TAGTGGTTA-TATAGCGAGATGCT---TAGGGA--ATAACA
gi|10 : gCCTGCGTAGCTCAGTTG--G-TAA-CGCTCCGG-ATCGCCAACTGCGA-GGTCGTGAGT--------TCAACTCCCCG---CG-TCGGCGT-CAACACAAATTTTAAT--TTCTTCACGTA--TTTC------GG-C--ATAGTGC--TATAGT-AC-TATTT-CGGCA-TA-GTGCACGGTTGCTA-CATAAATTTGT-AGAACACTATGCGA--AAATGGTGGAA------TAGTGATTA-TATAGGGAGAAGCTA-ATAGGAAGCATAATAa
gi|11 : TGCGTAGCTCAA-TC--GGTAA-CGCTCC-GGACTTCTAATCGCGA-CGTCGTGAGT--------TGGACTTGGCGAAACGGT----GA-AAATACAAATTTTAAT--TTCTTCATGTA--T---------------ACCGTGC---------AC-TATTT-CGGCA-TA-GTACACAGCCGCTA-TATAAATTCA-AAGAACAATTTCCAAATAAATGGTGGAG------TAGTGATTA-TGTAGTGGAAATCTA-ACAGGAAGCTTAATA
gi|12 : -G-ACCGCCAACCGCGA-CGTCGTGAGTAACTCAGTTCTACTCCCCA---CGTTGGC-GT-TAACACAAATTTTATA--T-CTTCATGTA--TTTC------GG-C--ATAGTGT--TATAGT-AC-TATTT-CGGCA-TA-GTGCACGGTCGCTA-CATAAATTCAT-AGAACACTATGCGT--AAATGGTGGAA------TAGTGAGTA-TATAGGGAGAAACTA-ACAGGAAGCATAATAc
gi|5 : ccg-AC-TATTT-CGGCA-TA-GTGCACGGTCGCTA-CATAAATCCAa
gi|16 : ATAAATTCATA-GAATACTATGCGA--AAATGCTGGAG------TAATGGTTA-TGTAGTGAGAAGTTA-ACAATAAGCATAATAgagannnnnnnnnnnnnnnnnnnnnnnnngttttttagtattctaaaacatccacaggcttgtctctgtctctcataaaatcgccgcgcagttttatactgaaattcatcgcatgtttagttttcttgggacattagatgtcggtccataaataaagctggttcgtcagtcccgaaacgattaggcaactcagatttcgttcccgattcagatgaatgacatcaccttgacgtcaccaacgtttccaatgacgttgg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): GCTCCGCTCAAACGGTAGTACCGTCAACATATTATAGGGAGAAACTAACAGGAAGCATTATAATATACT
Alignments
lowQualScore : 22 11 111111 111 11111 111111 11111 2222222 22222 11 2222222 11 1 55555555555555555 111 11111111 22222222 11111 22222222222222222222222 111111
lowQualScore : 2 1 44 11 0 11 999999 6 111 88 55555 6 1 6 999999 6 6 0 6 77777 2 3 2 2 4444444 0 0 88888 4 1 66 6 6 1111111 6 99 77 99 8 8 1 8 1 6 8 22222222222222222 000 8 0 8 0 6 6 6 6 2 6 1 1 888 1 5 1 1 4 5 4 44444444 99999999 66 0 66666 55 55 1 11111111111111111111111 55 3 3 3 3 0 2 333 55 000000 3 1 4
lowQualScore : . . .. .. . .. ...... . ... .. ..... . . . ...... . . . . ..... . . . . ....... . . ..... . . .. . . ....... . .. .. .. . . . . . . . ................. ... . . . . . . . . . . . . ... . . . . . . . ........ ........ .. . ..... .. .. . ....................... .. . . . . . . ... .. ...... . . .
lowQualScore : 5 0 00 33 7 00 222222 7 777 33 22222 7 0 7 222222 7 7 8 5 22222 5 2 0 5 0000000 8 8 44444 6 0 33 7 7 7777777 7 22 22 22 0 0 0 0 0 4 0 22222222222222222 000 0 8 0 8 7 7 7 7 5 7 7 7 333 0 7 0 9 4 5 0 55555555 55555555 44 7 44444 55 55 3 77777777777777777777777 88 6 6 6 6 4 2 888 00 555555 6 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNAAGTCCANTTTTAG-TATTTTAAAACATCG-ACAGGCTTGCCTCTGTC------TC-TCAT---AAAA-TC--G--CC-GCGCAGT-TT------TATA-CTAAAATTCATCGCATG-TTTAGTTTTCTTGGGACATTA--TAGATGTCGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGCN------ACTCATATTTT----CGTTTCTGATTCAGACGAATGACATTCACATTGACGTCACAAACGTTT-CCAAT-GACGTTGGTTGCTTAC-------TAATCAA-TATTGAGAACTTTTACGGCG--ATATAAGGCCTATC--TATT-GCTTTTCAGAGT-AATCATCT-ACAGAATGCTTTACAATTT-AC---CAGCA-TTAC-A--TAA-A-AAGTT-GATTTTAAATTCTT-AAAA-CGGG-TAT-TTAG-AACTGGAGGCCAATG-TTAACTTTATAATAAAAATTAAC-G-ACTCAA-TGCTCGNGGGCCTGCGTAGCTCAGTCGGTAA-CGCTCCGGACCTCCAACCGCG-ACGTCGTGAGT--------TCGACTCCCCGC-G---T--GGCGT-TAACACAAATTTT---A-TT--TCTTCACGTA--TTTC------GGC-ATAGTGC--TAT-AGT-AC-TATTT-CGGCATA-GTGC-ACGGTCGCTACATAAATTCA-T-AGAACACTATGCGA--AAATGGTGGAA------TAGTGATTA-TATAGNGAGAAGCTA-ACAGGAAGCATAATA
Reference ( family-2802 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAAGTCCANTTTTAGGCATTCCAGAACATCN-ACAGGCTTGCCTCTGTC------TC-TCAT---AAAA-TC--G--CC-GCGCAGT-TT------TATA-CTAAAATTCATCGCATG-TTTAGTTTTCTTGGGACATTA--TAGATGTCGGTCCCTAAATAAAGCTGGTTCGTCGGTCCCGAAACGATTAGGCN------ACTCATATTTT----CGTTTCCGATTCAGACGAATGACATTCACATTGACGTCACAAACGTTT-CCAAT-GACGTTGGTTGCTTAC-------TAATCAA-TATTGAGAACTTTTACGGCG--ATATAAGGCCTATC--TATT-GCTTTTCAGAGT-AATCANCC-ANAGAATGCTTCACAATTT-AC---CAGC--TTAC-A--TAA-A-AAGTT-GATTTTAAATTCTT-AAAA-CGGG-TAT-TTAG-AACTGGAGGCCAATG-TTAACTTTATAATAAAAATTAAC-G-ACNCAA-TGCTCGNGGGCCTGCGTAGCTCAGTCGGTAA-CGCTCCGGACCTCCAACCGCG-ACGTCGTGAGT--------TCGACTCCCCGC-G---T--GGCGT-NAACACAAATTTT---A-TT--TCTTCACGTA--TTTC------GGC-ATAGTGC--TAT-AGT-AC-TATTT-CGGCATA-GTGC-ACGGTCGCTACATAAATTCA-T-AGAACACTATGCGA--AAATGGTGGAA------TAGTGATTA-TATAGNGAGAAGCTA-ACAGGAAGCATAATA
gi|1 : GCGAAGTCCATTTTCAG-TATTTTAATACATCGGACAGGCTTGCCTCTGTC------TCGTCAT---AAAA-TC--G--CC-GCGCAGT-TT------TATA-CTAAAATTCATCGCATG-TTTAGTTT-CTTGGAACATTAATTAGATGTCCGGCCCTAAATA-----GTTTCGTCAGTCC-GAAACGATTAGGTT------ACTCATATTTT----TGTTTCTGAATCAGACGAATGACATTCACATTGACGTCACAAACGTTT-CCAAT-GATGTTGGTTGCTTAC-------TAATCAA-TACTGAAAAC--TTACGGCG--ATATAAGGCCTATC--TATT-GCTTTTCAGAGT-AATCAATC-AAAGAATGCTT-ACAATTT-AC---CAGCAATTACAA--TAA-A-AAGTT-TATTTTAAATTCTT-AAAA-CGGG-GAT-TTAG-AACTAGAGGCCAATG-TTAACTTTATAATAAAAA-TAAC-G-ACTCAG-TGCTTGTAGGCCTGCGTAGCTCA-TC-GTAA-CGCTCC-GACCGCCAACCGCG-ACGTCGTGAGT--------TCGACTCCCCGC-G---TTCGCCGT-TAACACAAATTTT---ATTT--TCTTCACGTA--TTTC------GGG-ATAGTGC--TAT-AGT-AC-TATTT-CGGCAT--GTGC-ACGGTCGC-ACATTAATTCA-TAAGAACACTATGCGA--AAATGGTGGAA------TAGTGATTAGTATAGGAGGAAGCTAGATAGGAAGCATAATA
gi|10 : taaatacattcttcatgattaaatctattgctaatttcatcatcttgatatatgtataattatatattaatataataatgctacattttgagttactatgccaaagatagtatcagggttttgacgcaatggtccacgagccgaaggcaagtggactaatgcgtcaaaaaccctgactactatttcaaattggcatagtacacgcaaaatgtaacatttattattattattgcttgagtgtccataatgtgcattaaaaataccaccactttgattgagCCTGCGTAGCTCAGTTGGTAA-CGCTCCGGATCGCCAACTGCG-AGGTCGTGAGT--------TCAACTCCCCGC-G---TC-GGCGT-CAACACAAATTTT---AATT--TCTTCACGTA--TTTC------GGC-ATAGTGC--TAT-AGT-AC-TATTT-CGGCATA-GTGC-ACGGTTGCTACATAAATTTG-T-AGAACACTATGCGA--AAATGGTGGAA------TAGTGATTA-TATAGGGAGAAGCTA-ATAGGAAGCATAATA
gi|11 : TGCGTAGCTCAATCGGTAA-CGCTCCGGACTTCTAATCGCG-ACGTCGTGAGT--------TGGACT--TGGC-GAAAC--GGTGA-AAATACAAATTTTA--A-TT--TCTTCATGTA--T-------------ACCGTGC----------AC-TATTT-CGGCATA-GTAC-ACAGCCGCTATATAAATTCA-A-AGAACAATTTCCAAATAAATGGTGGAG------TAGTGATTA-TGTAGTGGAAATCTA-ACAGGAAGCTTAATA
gi|12 : CCGGACCGCCAACCGCG-ACGTCGTGAGTAACTCAGTTCTACTCCCCAC-G---TT-GGCGT-TAACACAAATTTT---A-TA--TCTTCATGTA--TTTC------GGC-ATAGTGT--TAT-AGT-AC-TATTT-CGGCATA-GTGC-ACGGTCGCTACATAAATTCA-T-AGAACACTATGCGT--AAATGGTGGAA------TAGTGAGTA-TATAGGGAGAAACTA-ACAGGAAGCATAATAc
gi|13 : GCCAAGTCCAGTTTTAGGCATTTCAGAATATCA-ACAGGCTTGCCCCTGTC------CA-TAATGAGAAGG-TCCAGTTCCAGCGAGGCGTT------CATG-CTAAAATTCATAGCATGTTTTAGTa
gi|14 : caTGGTTGCTTACTAGTTACTAATCAA-TATTGAGAACTTTTACAGCG--ATAT-AGGCC--------------------------TCATCT-ACAGAATGCTTTACAATTT-ACAATCAAC--TCGCTG--TAATG-AAGTT-CTTTTTA
gi|15 : AGGTTTGCTTCTGTTCCGCTGTC-CCTT---AAAACTC--A--CC-GAGTATT-TC------CGTAACTAAAATTGATGACATG-TTTAG-TTTCTTGg
gi|16 : ccatcatactaagttATAAATTCA-T-AGAATACTATGCGA--AAATGCTGGAG------TAATGGTTA-TGTAGTGAGAAGTTA-ACAATAAGCATAATA
gi|17 : t-TATAGGGAGAAACTA-ACAGGAAGCATTATAa
gi|2 : gctccgctcaaacggtagtaccgtcaacatatTCA-ACAGGCTTGCCTCTGTC------TC-TCAT---AAA------------------T-TT------TATA-CTAAAATTGATCGCATG-TTTAGTTTTCTTGG-ACATTA--TA--TGTTGGTCCCTAAATAAAGCTGGTTCTTCGGTCCCGAAACGATTAGGCT------ACTCATATT-----------------CAAACGAAAGACAT-CACATGAACGTCA--AACGTTTTCCAATCGACGTTGGTTGCTTAC-------TA---------------CTTTACCGGCGCGATATA-GGCCTATCCTTATTTGCTTTTCAGAGTGAATCAATCTATGGAATGTTT-ACAATTTTAC---CAGCA-TTAC-AAATAA-ACAAGTTTGACTTTAAAT-CTT-AAAA-CGGAATATGTTAG-AACTGGAG--CAATGGTTAACTTTAAAATAAAAATTAAC-G-ACTCAGGTACTCATGG-CCTGCGTAGCTCAGTCGGTAAACGCTCCGGACCGCCA-CCGCG-ACGTCGTGAGT--------TCGACTCCCCGT-------------------CAAATTTTTCTA-AT--TCTTCACGTAATCTTCG-----GGCAATAGTGC---ATAAGTAAC-TATTTCCGGCATACGTGC-ACGG----------------------ACACTATGCGA--AAATGGTGGAA------TAGTGATTA-TATCGGGAGAAGCTA-ACAGGAAGCATAATatatact
gi|3 : CA------ACTCATATTTTAATTTGTTTCTGATTCAGACGAATGACAT-CACATTGACGTCACAAACGTTT-CCAAT-GACGTTGGTTGCTTAC-------TAATCAA-TATTGAGAACTTTTACGGCG--ATAT-AGGCCTATC--TATT-GCTTTTCAGAGT-AATCATCT-ATAGAATGCTTCACAATTC-AC---AAGCA-TTAC-AT-TAA-A-AAGTT-GATTTTAAATTCTTAAAAA-TGGG-TAT-TTAGAAACTGGAGG-CAATG-TTCACTTTATA--AAAAATT-AC-A-GCTCAA-TGCTCATTGGCCTGTGTAGCTCAGTCGGTAA--G-TTCGGACC-ACAACCGCG-ACGTCGTGAGT--------T-GACTCCCTGC-GT--T--GGCGT-TAACACAAATTTT---A-TT--TCTTCACGTA--TCTCCCATCTGGT-GGTGTGCAGTAT-AGT-CCATAATT-CGGCATA-GTTG-A-GGTTGCTACATAAATTCA-T-AGAACAATATGC-A--GAATGGTGAAA------TAGTGATTA-TATAGAGAGAAGCTA-ACAGGAAGCATAAT
gi|4 : aTCACATTGACGTCACAAATGTTT-CCAAT-TACGTTGATTGCTTAC-------TAATCAAATATTGAAATCTTTTACGGCG--ATCTAGGGC-TATT--TATT-GTTTTTCAAAGT-AATCATCT-ACAGAATGCTTTACAATTT-AC---C-------------TAA-A-AAGTT-GGTATTAAACTCTT-A----------------G-AACTGGAGGCCAATA-TTAACTATATTATAAAAATTAAC-A-ACATAA-TGCTCAAAGGCCTGCATAGCTCAGTCGGTAA-CGCTCCGGACCTCCAATCGCG-ACGTCGTGAGA--------TCGACTCACTGC-G---TC-GGCCT-AAACACAAATTTT---A-TT--TCTTCATGTA--TTTC------GGC-ATACTAT--CAT-AGC-AC-TATTT-CGGCATA-GTGC-ACGGTCGCGATACAAATTCA-T-AGAACACTATGCGA--AAATGGTGCAA------TAGTG
gi|5 : ca-AC-TATTT-CGGCATA-GTGC-ACGGTCGCTACATAAATCCA-G-AGA
gi|5 : TTTTAG-TATTCTAAAACATCC-ACAGGCTTGTCTCTGTC------TC-TCAT---AAAA-TC--G--CC-GCGCAGT-TT------TATA-CTGAAATTCATCGCATG-TTTAGTTTTCTTGGGACAT----TAGATGTCGGTCCATAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGCA------ACTCAGA-TTT----CGTTCCCGATTCAGATGAATGACA-TCACCTTGACGTCACCAACGTTT-CCAAT-GACGTTGGnnnnnnnnnnnnnnnnnnnnnnnnngttttttagtattctaaaacatccacaggcttgtctctgtctctcataaaatcgccgcgcagttttatactgaaattcatcgcatgtttagttttcttgggacattagatgtcggtccataaataaagctggttcgtcagtcccgaaacgattaggcaactcagatttcgttcccgattcagatgaatgacatcaccttgacgtcaccaacgtttccaatgacgttgg
gi|6 : actatttcggcatagtgcacggtcgctacataaatccagagannnnnnnnnnnnnnnnnnnnnnnnngtt-CGGG-TAT-TTAG-AACTGAGGGCTAATG-TTAACTTTATAGTAAAGATTAAC-A-ACGTAA-TGCTCGAGGGTCTGCGTAGCTCATTCAGTAA-CGTTCCGGACATCCAACAGCA-ACGTCTTCAGT--------TCGACTCCTCGCAA---C--GGCGTAGAAAAAAAATGTT---A-TT--TATTCCTGTA--TGCC-------------GTGC----------AC-TATTT-CAGCATA-ATGC-ATGGTCGCTATATAAATTTA-T-AGAACACTATGCGA--AAATGA-GGAGTATATCTAGTGATTA-TTTAGCGAGAAGCTA-ACAGGAAGCATAATA
gi|7 : TCTT-AAAAACTGG-TAT-TTAA-AACTGGAGGCCAATG-TTAACTATATAATAAAAATTTAC-G-ACTCAA-TGTTCATGGGCCTGAGTAGCTCAGTCGGTAA-CGCTCCAAACCTCCAATTGCA-ACGTCGTGAGA--------TCGACTCCCCGCGG---T--GGCGT-TAGAATAGATTTTA--A-TT--TCTCCACGTA--TTTC------GGC-ATA---C--CAT-ATT-AC-TATTT-CGACATT-ATG-------CGCTATATGAATTCA-T-AGAAGAATATGCGA--AAATGGTGGAA------TAGTGATTA-TATAGTTAGA
gi|8 : AGGCTTGTCTTTGTC------TC-TCAT---AAAA-TC--G--CC-GCGCAGT-TTAACTTTTATA-CTGAAATTCATCGCATG-TTTAGTTTTCTTGGGACATTA----GATGTTGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGCCTAGGCAACTCATATTTT-----GTTTCTGATTCAGACGAATGACAT-CACATTGACGTCACAAACGTTT-CCAAT-GACGCTGGTTGCTTAC-------TAATCAA-TATTGAGAACTTTTACGGCA--ATAT-AGGCCTATC--T
gi|9 : AAAAATTAACCGCACGTAA-TGCTCGAGGGTCCGCGTAGCTCAATCGGCAC-CGCTCCGGACCTTCAACCGCGAATGTCGTGAGT--------TCGACTCC---C-G---T--GGTGT-TATTA-AAATACT---C-TTAATCTTCCCATA--TCCC-----------T--TG-------AG--AT-TATTT--GTAATC-GGGCAACGGCCGCATTATAAATTAAGT-AGAACGCTATGCGA--ATTTGTCTTAG------TAGTGGTTA-TATAGCGAGATGCT---TAGGGA--ATAACA
Alignments
lowQualScore : 1 11 111111 111 11111 111111 11111 2222222 22222 11 2222222 11 1 3333 1 1 11111111 222222 11111 11111 22222222222222222222222 111111
lowQualScore : 1 1 3 44 999999 6 111 88 55555 6 1 6 999999 6 6 0 6 77777 2 3 2 4444444 0 0 88888 1 66 6 6 1111111 6 99 77 99 8 8 8 1 0 8 3 0 0000 0 0 0 8 0 6 6 6 6 2 6 1 1 888 1 5 1 1 4 5 4 44444444 333333 00000 0 66666 55 55 1 11111111111111111111111 55 3 3 3 3 0 2 333 55 000000 3 1 4
lowQualScore : . . . .. ...... . ... .. ..... . . . ...... . . . . ..... . . . ....... . . ..... . .. . . ....... . .. .. .. . . . . . . . . .... . . . . . . . . . . . . . ... . . . . . . . ........ ...... ..... . ..... .. .. . ....................... .. . . . . . . ... .. ...... . . .
lowQualScore : 0 0 3 22 222222 7 777 33 22222 7 0 7 222222 7 7 8 5 22222 5 2 5 0000000 8 8 44444 0 33 7 7 7777777 7 22 22 22 0 0 0 4 8 0 2 0 8888 0 0 8 0 8 7 7 7 7 5 7 7 7 333 6 7 0 9 4 5 0 55555555 666666 99999 7 44444 55 55 3 77777777777777777777777 88 6 6 6 6 4 2 888 00 555555 6 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNAAGTCCANTTTTAG-TATTTTAAAACATCG-ACAGGCTTGCCTCTGTC------TC-TCAT---AAAA-TC--G--CC-GCGCAGT-TT------TATA-CTAAAATTCATCGCATG-TTTAGTTTTCTTGGGACATTA--TAGATGTCGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGCN------ACTCATATTTT----CGTTTCTGATTCAGACGAATGACATTCACATTGACGTCACAAACGTTT-CCAAT-GACGTTGGTTGCTTAC-------TAATCAA-TATTGAGAACTTTTACGGCG--ATATAAGGCCTATC--TATT-GCTTTTCAGAGT-AATCA-TCTACAGAATGCTTTACAATTT-ACCAGC-ATTAC-A--TAAA-AAGTT-GATTTTAAATTCTT-AAAA-CGGG-TAT-TTAG-AACTGGAGGCCAATG-TTAACTTTATAATAAAAATTAAC-G-ACTCAA-TGCTCGNGGGCCTGCGTAGCTCAGTCGGTAA-CGCTCCGGACCTCCAACCGCG-ACGTCGTGAGT--------TCGACTCCCCGC-G-T--GGCGT-T---AACACAAATTTT---A-TT--TCTTCACGTA--TTTC------GGC-ATAGTGC--TAT-AGT-AC-TATTT-CGGCATA-GTGC-ACGGTCGCTACATAAATTCA-T-AGAACACTATGCGA--AAATGGTGGAA------TAGTGATTA-TATAGNGAGAAGCTA-ACAGGAAGCATAATA
Reference ( family-2802 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNAAGTCCANTTTTAG-TATTTTAAAACATCG-ACAGGCTTGCCTCTGTC------TC-TCAT---AAAA-TC--G--CC-GCGCAGT-TT------TATA-CTAAAATTCATCGCATG-TTTAGTTTTCTTGGGACATTA--TAGATGTCGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGCN------ACTCATATTTT----CGTTTCTGATTCAGACGAATGACATTCACATTGACGTCACAAACGTTT-CCAAT-GACGTTGGTTGCTTAC-------TAATCAA-TATTGAGAACTTTTACGGCG--ATATAAGGCCTATC--TATT-GCTTTTCAGAGT-AATCA-TCTACAGAATGCTTTACAATTT-ACCAGC-ATTAC-A--TAAA-AAGTT-GATTTTAAATTCTT-AAAA-CGGG-TAT-TTAG-AACTGGAGGCCAATG-TTAACTTTATAATAAAAATTAAC-G-ACTCAA-TGCTCGNGGGCCTGCGTAGCTCAGTCGGTAA-CGCTCCGGACCTCCAACCGCG-ACGTCGTGAGT--------TCGACTCCCCGC-G-T--GGCGT-T---AACACAAATTTT---A-TT--TCTTCACGTA--TTTC------GGC-ATAGTGC--TAT-AGT-AC-TATTT-CGGCATA-GTGC-ACGGTCGCTACATAAATTCA-T-AGAACACTATGCGA--AAATGGTGGAA------TAGTGATTA-TATAGNGAGAAGCTA-ACAGGAAGCATAATA
gi|1 : GCGAAGTCCATTTTCAG-TATTTTAATACATCGGACAGGCTTGCCTCTGTC------TCGTCAT---AAAA-TC--G--CC-GCGCAGT-TT------TATA-CTAAAATTCATCGCATG-TTTAGTTT-CTTGGAACATTAATTAGATGTCCGGCCCTAAATA-----GTTTCGTCAGTCC-GAAACGATTAGGTT------ACTCATATTTT----TGTTTCTGAATCAGACGAATGACATTCACATTGACGTCACAAACGTTT-CCAAT-GATGTTGGTTGCTTAC-------TAATCAA-TACTGAAAAC--TTACGGCG--ATATAAGGCCTATC--TATT-GCTTTTCAGAGT-AATCA-ATCAAAGAATGC-TTACAATTT-ACCAGCAATTACAA--TAAA-AAGTT-TATTTTAAATTCTT-AAAA-CGGG-GAT-TTAG-AACTAGAGGCCAATG-TTAACTTTATAATAAAAA-TAAC-G-ACTCAG-TGCTTGTAGGCCTGCGTAGCTCA-TC-GTAA-CGCTCC-GACCGCCAACCGCG-ACGTCGTGAGT--------TCGACTCCCCGC-G-TTCGCCGT-T---AACACAAATTTT---ATTT--TCTTCACGTA--TTTC------GGG-ATAGTGC--TAT-AGT-AC-TATTT-CGGCAT--GTGC-ACGGTCGC-ACATTAATTCA-TAAGAACACTATGCGA--AAATGGTGGAA------TAGTGATTAGTATAGGAGGAAGCTAGATAGGAAGCATAATA
gi|10 : taaatacattcttcatgattaaatctattgctaatttcatcatcttgatatatgtataattatatattaatataataatgctacattttgagttactatgccaaagatagtatcagggttttgacgcaatggtccacgagccgaaggcaagtggactaatgcgtcaaaaaccctgactactatttcaaattggcatagtacacgcaaaatgtaacatttattattattattgcttgagtgtccataatgtgcattaaaaataccaccactttgattgagCCTGCGTAGCTCAGTTGGTAA-CGCTCCGGATCGCCAACTGCG-AGGTCGTGAGT--------TCAACTCCCCGC-G-TC-GGCGT-C---AACACAAATTTT---AATT--TCTTCACGTA--TTTC------GGC-ATAGTGC--TAT-AGT-AC-TATTT-CGGCATA-GTGC-ACGGTTGCTACATAAATTTG-T-AGAACACTATGCGA--AAATGGTGGAA------TAGTGATTA-TATAGGGAGAAGCTA-ATAGGAAGCATAATA
gi|11 : TGCGTAGCTCAATCGGTAA-CGCTCCGGACTTCTAATCGCG-ACGTCGTGAGT--------TGGACT--TGGC-G-A--AACGG-TGAAAATACAAATTTTA--A-TT--TCTTCATGTA--T-------------ACCGTGC----------AC-TATTT-CGGCATA-GTAC-ACAGCCGCTATATAAATTCA-A-AGAACAATTTCCAAATAAATGGTGGAG------TAGTGATTA-TGTAGTGGAAATCTA-ACAGGAAGCTTAATA
gi|12 : CCGGACCGCCAACCGCG-ACGTCGTGAGTAACTCAGTTCTACTCCCCAC-G-TT-GGCGT-T---AACACAAATTTT---A-TA--TCTTCATGTA--TTTC------GGC-ATAGTGT--TAT-AGT-AC-TATTT-CGGCATA-GTGC-ACGGTCGCTACATAAATTCA-T-AGAACACTATGCGT--AAATGGTGGAA------TAGTGAGTA-TATAGGGAGAAACTA-ACAGGAAGCATAATAc
gi|13 : GCCAAGTCCAGTTTTAGGCATTTCAGAATATCA-ACAGGCTTGCCCCTGTC------CA-TAATGAGAAGG-TCCAGTTCCAGCGAGGCGTT------CATG-CTAAAATTCATAGCATGTTTTAGTa
gi|14 : caTGGTTGCTTACTAGTTACTAATCAA-TATTGAGAACTTTTACAGCG--ATAT-AGGCC--------------------------TCA-TCTACAGAATGCTTTACAATTT-AC
gi|15 : AGGTTTGCTTCTGTTCCGCTGTC-CCTT---AAAACTC--A--CC-GAGTATT-TC------CGTAACTAAAATTGATGACATG-TTTAG-TTTCTTGaatcaactcgctgtaatgaagttctttttag
gi|16 : ccatcatactaagttATAAATTCA-T-AGAATACTATGCGA--AAATGCTGGAG------TAATGGTTA-TGTAGTGAGAAGTTA-ACAATAAGCATAATA
gi|17 : t-TATAGGGAGAAACTA-ACAGGAAGCATTATAa
gi|2 : gctccgctcaaacggtagtaccgtcaacatatTCA-ACAGGCTTGCCTCTGTC------TC-TCAT---AAA------------------T-TT------TATA-CTAAAATTGATCGCATG-TTTAGTTTTCTTGG-ACATTA--TA--TGTTGGTCCCTAAATAAAGCTGGTTCTTCGGTCCCGAAACGATTAGGCT------ACTCATATT-----------------CAAACGAAAGACAT-CACATGAACGTCA--AACGTTTTCCAATCGACGTTGGTTGCTTAC-------TA---------------CTTTACCGGCGCGATATA-GGCCTATCCTTATTTGCTTTTCAGAGTGAATCAATCTATGGAATG-TTTACAATTTTACCAGC-ATTAC-AAATAAACAAGTTTGACTTTAAAT-CTT-AAAA-CGGAATATGTTAG-AACTGGAG--CAATGGTTAACTTTAAAATAAAAATTAAC-G-ACTCAGGTACTCATGG-CCTGCGTAGCTCAGTCGGTAAACGCTCCGGACCGCCA-CCGCG-ACGTCGTGAGT--------TCGACTCCCCGT--------------------CAAATTTTTCTA-AT--TCTTCACGTAATCTTCG-----GGCAATAGTGC---ATAAGTAAC-TATTTCCGGCATACGTGC-ACGG----------------------ACACTATGCGA--AAATGGTGGAA------TAGTGATTA-TATCGGGAGAAGCTA-ACAGGAAGCATAATatatact
gi|3 : CA------ACTCATATTTTAATTTGTTTCTGATTCAGACGAATGACAT-CACATTGACGTCACAAACGTTT-CCAAT-GACGTTGGTTGCTTAC-------TAATCAA-TATTGAGAACTTTTACGGCG--ATAT-AGGCCTATC--TATT-GCTTTTCAGAGT-AATCA-TCTATAGAATGCTTCACAATTC-ACAAGC-ATTAC-AT-TAAA-AAGTT-GATTTTAAATTCTTAAAAA-TGGG-TAT-TTAGAAACTGGAGG-CAATG-TTCACTTTATA--AAAAATT-AC-A-GCTCAA-TGCTCATTGGCCTGTGTAGCTCAGTCGGTAA--G-TTCGGACC-ACAACCGCG-ACGTCGTGAGT--------T-GACTCCCTGC-GTT--GGCGT-T---AACACAAATTTT---A-TT--TCTTCACGTA--TCTCCCATCTGGT-GGTGTGCAGTAT-AGT-CCATAATT-CGGCATA-GTTG-A-GGTTGCTACATAAATTCA-T-AGAACAATATGC-A--GAATGGTGAAA------TAGTGATTA-TATAGAGAGAAGCTA-ACAGGAAGCATAAT
gi|4 : aTCACATTGACGTCACAAATGTTT-CCAAT-TACGTTGATTGCTTAC-------TAATCAAATATTGAAATCTTTTACGGCG--ATCTAGGGC-TATT--TATT-GTTTTTCAAAGT-AATCA-TCTACAGAATGCTTTACAATTT-ACC-------------TAAA-AAGTT-GGTATTAAACTCTT-A----------------G-AACTGGAGGCCAATA-TTAACTATATTATAAAAATTAAC-A-ACATAA-TGCTCAAAGGCCTGCATAGCTCAGTCGGTAA-CGCTCCGGACCTCCAATCGCG-ACGTCGTGAGA--------TCGACTCACTGC-G-TC-GGCCT-A---AACACAAATTTT---A-TT--TCTTCATGTA--TTTC------GGC-ATACTAT--CAT-AGC-AC-TATTT-CGGCATA-GTGC-ACGGTCGCGATACAAATTCA-T-AGAACACTATGCGA--AAATGGTGCAA------TAGTG
gi|5 : ca-AC-TATTT-CGGCATA-GTGC-ACGGTCGCTACATAAATCCA-G-AGA
gi|5 : TTTTAG-TATTCTAAAACATCC-ACAGGCTTGTCTCTGTC------TC-TCAT---AAAA-TC--G--CC-GCGCAGT-TT------TATA-CTGAAATTCATCGCATG-TTTAGTTTTCTTGGGACAT----TAGATGTCGGTCCATAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGCA------ACTCAGA-TTT----CGTTCCCGATTCAGATGAATGACA-TCACCTTGACGTCACCAACGTTT-CCAAT-GACGTTGGnnnnnnnnnnnnnnnnnnnnnnnnngttttttagtattctaaaacatccacaggcttgtctctgtctctcataaaatcgccgcgcagttttatactgaaattcatcgcatgtttagttttcttgggacattagatgtcggtccataaataaagctggttcgtcagtcccgaaacgattaggcaactcagatttcgttcccgattcagatgaatgacatcaccttgacgtcaccaacgtttccaatgacgttgg
gi|6 : actatttcggcatagtgcacggtcgctacataaatccagagannnnnnnnnnnnnnnnnnnnnnnnngtt-CGGG-TAT-TTAG-AACTGAGGGCTAATG-TTAACTTTATAGTAAAGATTAAC-A-ACGTAA-TGCTCGAGGGTCTGCGTAGCTCATTCAGTAA-CGTTCCGGACATCCAACAGCA-ACGTCTTCAGT--------TCGACTCCTCGCAA-C--GGCGTAG---AAAAAAAATGTT---A-TT--TATTCCTGTA--TGCC-------------GTGC----------AC-TATTT-CAGCATA-ATGC-ATGGTCGCTATATAAATTTA-T-AGAACACTATGCGA--AAATGA-GGAGTATATCTAGTGATTA-TTTAGCGAGAAGCTA-ACAGGAAGCATAATA
gi|7 : TCTT-AAAAACTGG-TAT-TTAA-AACTGGAGGCCAATG-TTAACTATATAATAAAAATTTAC-G-ACTCAA-TGTTCATGGGCCTGAGTAGCTCAGTCGGTAA-CGCTCCAAACCTCCAATTGCA-ACGTCGTGAGA--------TCGACTCCCCGCGG-T--GGCGT-T---AGAATAGATTTTA--A-TT--TCTCCACGTA--TTTC------GGC-ATA---C--CAT-ATT-AC-TATTT-CGACATT-ATG-------CGCTATATGAATTCA-T-AGAAGAATATGCGA--AAATGGTGGAA------TAGTGATTA-TATAGTTAGA
gi|8 : AGGCTTGTCTTTGTC------TC-TCAT---AAAA-TC--G--CC-GCGCAGT-TTAACTTTTATA-CTGAAATTCATCGCATG-TTTAGTTTTCTTGGGACATTA----GATGTTGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGCCTAGGCAACTCATATTTT-----GTTTCTGATTCAGACGAATGACAT-CACATTGACGTCACAAACGTTT-CCAAT-GACGCTGGTTGCTTAC-------TAATCAA-TATTGAGAACTTTTACGGCA--ATAT-AGGCCTATC--T
gi|9 : AAAAATTAACCGCACGTAA-TGCTCGAGGGTCCGCGTAGCTCAATCGGCAC-CGCTCCGGACCTTCAACCGCGAATGTCGTGAGT--------TCGACTCC---C-G-T--GGTGT-T---ATTA-AAATACT---C-TTAATCTTCCCATA--TCCC-----------T--TG-------AG--AT-TATTT--GTAATC-GGGCAACGGCCGCATTATAAATTAAGT-AGAACGCTATGCGA--ATTTGTCTTAG------TAGTGGTTA-TATAGCGAGATGCT---TAGGGA--ATAACA
Alignments
lowQualScore : 1 11 111111 111 11111 111111 11111 2222222 22222 11 2222222 11 1 3333 1 1 11111111 222222 11111 11111 22222222222222222222222 111111
lowQualScore : 1 1 3 44 999999 6 111 88 55555 6 1 6 999999 6 6 0 6 77777 2 3 2 4444444 0 0 88888 1 66 6 6 1111111 6 99 77 99 8 8 8 1 0 8 3 0 0000 0 0 0 8 0 6 6 6 6 2 6 1 1 888 1 5 1 1 4 5 4 44444444 333333 00000 0 66666 55 55 1 11111111111111111111111 55 3 3 3 3 0 2 333 55 000000 3 1 4
lowQualScore : . . . .. ...... . ... .. ..... . . . ...... . . . . ..... . . . ....... . . ..... . .. . . ....... . .. .. .. . . . . . . . . .... . . . . . . . . . . . . . ... . . . . . . . ........ ...... ..... . ..... .. .. . ....................... .. . . . . . . ... .. ...... . . .
lowQualScore : 0 0 3 22 222222 7 777 33 22222 7 0 7 222222 7 7 8 5 22222 5 2 5 0000000 8 8 44444 0 33 7 7 7777777 7 22 22 22 0 0 0 4 8 0 2 0 8888 0 0 8 0 8 7 7 7 7 5 7 7 7 333 6 7 0 9 4 5 0 55555555 666666 99999 7 44444 55 55 3 77777777777777777777777 88 6 6 6 6 4 2 888 00 555555 6 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNAAGTCCANTTTTAG-TATTTTAAAACATCG-ACAGGCTTGCCTCTGTC------TC-TCAT---AAAA-TC--G--CC-GCGCAGT-TT------TATA-CTAAAATTCATCGCATG-TTTAGTTTTCTTGGGACATTA--TAGATGTCGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGCN------ACTCATATTTT----CGTTTCTGATTCAGACGAATGACATTCACATTGACGTCACAAACGTTT-CCAAT-GACGTTGGTTGCTTAC-------TAATCAA-TATTGAGAACTTTTACGGCG--ATATAAGGCCTATC--TATT-GCTTTTCAGAGT-AATCA-TCTACAGAATGCTTTACAATTT-ACCAGC-ATTAC-A--TAAA-AAGTT-GATTTTAAATTCTT-AAAA-CGGG-TAT-TTAG-AACTGGAGGCCAATG-TTAACTTTATAATAAAAATTAAC-G-ACTCAA-TGCTCGNGGGCCTGCGTAGCTCAGTCGGTAA-CGCTCCGGACCTCCAACCGCG-ACGTCGTGAGT--------TCGACTCCCCGC-G-T--GGCGT-T---AACACAAATTTT---A-TT--TCTTCACGTA--TTTC------GGC-ATAGTGC--TAT-AGT-AC-TATTT-CGGCATA-GTGC-ACGGTCGCTACATAAATTCA-T-AGAACACTATGCGA--AAATGGTGGAA------TAGTGATTA-TATAGNGAGAAGCTA-ACAGGAAGCATAATA
Reference ( family-2802 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNAAGTCCANTTTTAG-TATTTTAAAACATCG-ACAGGCTTGCCTCTGTC------TC-TCAT---AAAA-TC--G--CC-GCGCAGT-TT------TATA-CTAAAATTCATCGCATG-TTTAGTTTTCTTGGGACATTA--TAGATGTCGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGCN------ACTCATATTTT----CGTTTCTGATTCAGACGAATGACATTCACATTGACGTCACAAACGTTT-CCAAT-GACGTTGGTTGCTTAC-------TAATCAA-TATTGAGAACTTTTACGGCG--ATATAAGGCCTATC--TATT-GCTTTTCAGAGT-AATCA-TCTACAGAATGCTTTACAATTT-ACCAGC-ATTAC-A--TAAA-AAGTT-GATTTTAAATTCTT-AAAA-CGGG-TAT-TTAG-AACTGGAGGCCAATG-TTAACTTTATAATAAAAATTAAC-G-ACTCAA-TGCTCGNGGGCCTGCGTAGCTCAGTCGGTAA-CGCTCCGGACCTCCAACCGCG-ACGTCGTGAGT--------TCGACTCCCCGC-G-T--GGCGT-T---AACACAAATTTT---A-TT--TCTTCACGTA--TTTC------GGC-ATAGTGC--TAT-AGT-AC-TATTT-CGGCATA-GTGC-ACGGTCGCTACATAAATTCA-T-AGAACACTATGCGA--AAATGGTGGAA------TAGTGATTA-TATAGNGAGAAGCTA-ACAGGAAGCATAATA
gi|1 : GCGAAGTCCATTTTCAG-TATTTTAATACATCGGACAGGCTTGCCTCTGTC------TCGTCAT---AAAA-TC--G--CC-GCGCAGT-TT------TATA-CTAAAATTCATCGCATG-TTTAGTTT-CTTGGAACATTAATTAGATGTCCGGCCCTAAATA-----GTTTCGTCAGTCC-GAAACGATTAGGTT------ACTCATATTTT----TGTTTCTGAATCAGACGAATGACATTCACATTGACGTCACAAACGTTT-CCAAT-GATGTTGGTTGCTTAC-------TAATCAA-TACTGAAAAC--TTACGGCG--ATATAAGGCCTATC--TATT-GCTTTTCAGAGT-AATCA-ATCAAAGAATGC-TTACAATTT-ACCAGCAATTACAA--TAAA-AAGTT-TATTTTAAATTCTT-AAAA-CGGG-GAT-TTAG-AACTAGAGGCCAATG-TTAACTTTATAATAAAAA-TAAC-G-ACTCAG-TGCTTGTAGGCCTGCGTAGCTCA-TC-GTAA-CGCTCC-GACCGCCAACCGCG-ACGTCGTGAGT--------TCGACTCCCCGC-G-TTCGCCGT-T---AACACAAATTTT---ATTT--TCTTCACGTA--TTTC------GGG-ATAGTGC--TAT-AGT-AC-TATTT-CGGCAT--GTGC-ACGGTCGC-ACATTAATTCA-TAAGAACACTATGCGA--AAATGGTGGAA------TAGTGATTAGTATAGGAGGAAGCTAGATAGGAAGCATAATA
gi|10 : taaatacattcttcatgattaaatctattgctaatttcatcatcttgatatatgtataattatatattaatataataatgctacattttgagttactatgccaaagatagtatcagggttttgacgcaatggtccacgagccgaaggcaagtggactaatgcgtcaaaaaccctgactactatttcaaattggcatagtacacgcaaaatgtaacatttattattattattgcttgagtgtccataatgtgcattaaaaataccaccactttgattgagCCTGCGTAGCTCAGTTGGTAA-CGCTCCGGATCGCCAACTGCG-AGGTCGTGAGT--------TCAACTCCCCGC-G-TC-GGCGT-C---AACACAAATTTT---AATT--TCTTCACGTA--TTTC------GGC-ATAGTGC--TAT-AGT-AC-TATTT-CGGCATA-GTGC-ACGGTTGCTACATAAATTTG-T-AGAACACTATGCGA--AAATGGTGGAA------TAGTGATTA-TATAGGGAGAAGCTA-ATAGGAAGCATAATA
gi|11 : TGCGTAGCTCAATCGGTAA-CGCTCCGGACTTCTAATCGCG-ACGTCGTGAGT--------TGGACT--TGGC-G-A--AACGG-TGAAAATACAAATTTTA--A-TT--TCTTCATGTA--T-------------ACCGTGC----------AC-TATTT-CGGCATA-GTAC-ACAGCCGCTATATAAATTCA-A-AGAACAATTTCCAAATAAATGGTGGAG------TAGTGATTA-TGTAGTGGAAATCTA-ACAGGAAGCTTAATA
gi|12 : CCGGACCGCCAACCGCG-ACGTCGTGAGTAACTCAGTTCTACTCCCCAC-G-TT-GGCGT-T---AACACAAATTTT---A-TA--TCTTCATGTA--TTTC------GGC-ATAGTGT--TAT-AGT-AC-TATTT-CGGCATA-GTGC-ACGGTCGCTACATAAATTCA-T-AGAACACTATGCGT--AAATGGTGGAA------TAGTGAGTA-TATAGGGAGAAACTA-ACAGGAAGCATAATAc
gi|13 : GCCAAGTCCAGTTTTAGGCATTTCAGAATATCA-ACAGGCTTGCCCCTGTC------CA-TAATGAGAAGG-TCCAGTTCCAGCGAGGCGTT------CATG-CTAAAATTCATAGCATGTTTTAGTa
gi|14 : caTGGTTGCTTACTAGTTACTAATCAA-TATTGAGAACTTTTACAGCG--ATAT-AGGCC--------------------------TCA-TCTACAGAATGCTTTACAATTT-AC
gi|15 : AGGTTTGCTTCTGTTCCGCTGTC-CCTT---AAAACTC--A--CC-GAGTATT-TC------CGTAACTAAAATTGATGACATG-TTTAG-TTTCTTGaatcaactcgctgtaatgaagttctttttag
gi|16 : ccatcatactaagttATAAATTCA-T-AGAATACTATGCGA--AAATGCTGGAG------TAATGGTTA-TGTAGTGAGAAGTTA-ACAATAAGCATAATA
gi|17 : t-TATAGGGAGAAACTA-ACAGGAAGCATTATAa
gi|2 : gctccgctcaaacggtagtaccgtcaacatatTCA-ACAGGCTTGCCTCTGTC------TC-TCAT---AAA------------------T-TT------TATA-CTAAAATTGATCGCATG-TTTAGTTTTCTTGG-ACATTA--TA--TGTTGGTCCCTAAATAAAGCTGGTTCTTCGGTCCCGAAACGATTAGGCT------ACTCATATT-----------------CAAACGAAAGACAT-CACATGAACGTCA--AACGTTTTCCAATCGACGTTGGTTGCTTAC-------TA---------------CTTTACCGGCGCGATATA-GGCCTATCCTTATTTGCTTTTCAGAGTGAATCAATCTATGGAATG-TTTACAATTTTACCAGC-ATTAC-AAATAAACAAGTTTGACTTTAAAT-CTT-AAAA-CGGAATATGTTAG-AACTGGAG--CAATGGTTAACTTTAAAATAAAAATTAAC-G-ACTCAGGTACTCATGG-CCTGCGTAGCTCAGTCGGTAAACGCTCCGGACCGCCA-CCGCG-ACGTCGTGAGT--------TCGACTCCCCGT--------------------CAAATTTTTCTA-AT--TCTTCACGTAATCTTCG-----GGCAATAGTGC---ATAAGTAAC-TATTTCCGGCATACGTGC-ACGG----------------------ACACTATGCGA--AAATGGTGGAA------TAGTGATTA-TATCGGGAGAAGCTA-ACAGGAAGCATAATatatact
gi|3 : CA------ACTCATATTTTAATTTGTTTCTGATTCAGACGAATGACAT-CACATTGACGTCACAAACGTTT-CCAAT-GACGTTGGTTGCTTAC-------TAATCAA-TATTGAGAACTTTTACGGCG--ATAT-AGGCCTATC--TATT-GCTTTTCAGAGT-AATCA-TCTATAGAATGCTTCACAATTC-ACAAGC-ATTAC-AT-TAAA-AAGTT-GATTTTAAATTCTTAAAAA-TGGG-TAT-TTAGAAACTGGAGG-CAATG-TTCACTTTATA--AAAAATT-AC-A-GCTCAA-TGCTCATTGGCCTGTGTAGCTCAGTCGGTAA--G-TTCGGACC-ACAACCGCG-ACGTCGTGAGT--------T-GACTCCCTGC-GTT--GGCGT-T---AACACAAATTTT---A-TT--TCTTCACGTA--TCTCCCATCTGGT-GGTGTGCAGTAT-AGT-CCATAATT-CGGCATA-GTTG-A-GGTTGCTACATAAATTCA-T-AGAACAATATGC-A--GAATGGTGAAA------TAGTGATTA-TATAGAGAGAAGCTA-ACAGGAAGCATAAT
gi|4 : aTCACATTGACGTCACAAATGTTT-CCAAT-TACGTTGATTGCTTAC-------TAATCAAATATTGAAATCTTTTACGGCG--ATCTAGGGC-TATT--TATT-GTTTTTCAAAGT-AATCA-TCTACAGAATGCTTTACAATTT-ACC-------------TAAA-AAGTT-GGTATTAAACTCTT-A----------------G-AACTGGAGGCCAATA-TTAACTATATTATAAAAATTAAC-A-ACATAA-TGCTCAAAGGCCTGCATAGCTCAGTCGGTAA-CGCTCCGGACCTCCAATCGCG-ACGTCGTGAGA--------TCGACTCACTGC-G-TC-GGCCT-A---AACACAAATTTT---A-TT--TCTTCATGTA--TTTC------GGC-ATACTAT--CAT-AGC-AC-TATTT-CGGCATA-GTGC-ACGGTCGCGATACAAATTCA-T-AGAACACTATGCGA--AAATGGTGCAA------TAGTG
gi|5 : ca-AC-TATTT-CGGCATA-GTGC-ACGGTCGCTACATAAATCCA-G-AGA
gi|5 : TTTTAG-TATTCTAAAACATCC-ACAGGCTTGTCTCTGTC------TC-TCAT---AAAA-TC--G--CC-GCGCAGT-TT------TATA-CTGAAATTCATCGCATG-TTTAGTTTTCTTGGGACAT----TAGATGTCGGTCCATAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGCA------ACTCAGA-TTT----CGTTCCCGATTCAGATGAATGACA-TCACCTTGACGTCACCAACGTTT-CCAAT-GACGTTGGnnnnnnnnnnnnnnnnnnnnnnnnngttttttagtattctaaaacatccacaggcttgtctctgtctctcataaaatcgccgcgcagttttatactgaaattcatcgcatgtttagttttcttgggacattagatgtcggtccataaataaagctggttcgtcagtcccgaaacgattaggcaactcagatttcgttcccgattcagatgaatgacatcaccttgacgtcaccaacgtttccaatgacgttgg
gi|6 : actatttcggcatagtgcacggtcgctacataaatccagagannnnnnnnnnnnnnnnnnnnnnnnngtt-CGGG-TAT-TTAG-AACTGAGGGCTAATG-TTAACTTTATAGTAAAGATTAAC-A-ACGTAA-TGCTCGAGGGTCTGCGTAGCTCATTCAGTAA-CGTTCCGGACATCCAACAGCA-ACGTCTTCAGT--------TCGACTCCTCGCAA-C--GGCGTAG---AAAAAAAATGTT---A-TT--TATTCCTGTA--TGCC-------------GTGC----------AC-TATTT-CAGCATA-ATGC-ATGGTCGCTATATAAATTTA-T-AGAACACTATGCGA--AAATGA-GGAGTATATCTAGTGATTA-TTTAGCGAGAAGCTA-ACAGGAAGCATAATA
gi|7 : TCTT-AAAAACTGG-TAT-TTAA-AACTGGAGGCCAATG-TTAACTATATAATAAAAATTTAC-G-ACTCAA-TGTTCATGGGCCTGAGTAGCTCAGTCGGTAA-CGCTCCAAACCTCCAATTGCA-ACGTCGTGAGA--------TCGACTCCCCGCGG-T--GGCGT-T---AGAATAGATTTTA--A-TT--TCTCCACGTA--TTTC------GGC-ATA---C--CAT-ATT-AC-TATTT-CGACATT-ATG-------CGCTATATGAATTCA-T-AGAAGAATATGCGA--AAATGGTGGAA------TAGTGATTA-TATAGTTAGA
gi|8 : AGGCTTGTCTTTGTC------TC-TCAT---AAAA-TC--G--CC-GCGCAGT-TTAACTTTTATA-CTGAAATTCATCGCATG-TTTAGTTTTCTTGGGACATTA----GATGTTGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGCCTAGGCAACTCATATTTT-----GTTTCTGATTCAGACGAATGACAT-CACATTGACGTCACAAACGTTT-CCAAT-GACGCTGGTTGCTTAC-------TAATCAA-TATTGAGAACTTTTACGGCA--ATAT-AGGCCTATC--T
gi|9 : AAAAATTAACCGCACGTAA-TGCTCGAGGGTCCGCGTAGCTCAATCGGCAC-CGCTCCGGACCTTCAACCGCGAATGTCGTGAGT--------TCGACTCC---C-G-T--GGTGT-T---ATTA-AAATACT---C-TTAATCTTCCCATA--TCCC-----------T--TG-------AG--AT-TATTT--GTAATC-GGGCAACGGCCGCATTATAAATTAAGT-AGAACGCTATGCGA--ATTTGTCTTAG------TAGTGGTTA-TATAGCGAGATGCT---TAGGGA--ATAACA
blockSeqs : C G G A CCGCTG . GAG AC CAGTT A A G AACTTT A T G TAT G A C CTAGGCA AATTT T T T C TAGTTAC A CG AG CT T G A C T A . AAA C T A A A G A C G A A CGC T G T G A G A AACTCAGT GTC TGAA TCTA AA AT T CCATCTGGTGGTGTGCAGTAT TA A C C A T GT AT TATATC . G .
blockSeqs : . A . . . G A . T . . . . G TA G A C T C T T . . . . . A . . . . T . A . AT . . . . . . . C . A A G T . T A . T . . GTT AG AA . . T GGGCAATAGTGCATA T . . . . T T . . . T .
blockSeqs : C . . . A G . C . . . . . T . A C A . T T . . . . . A . . . . T . . . . . . . . . . . C . G A A A . A G . G . . GTT C AA . . T GGCATAGTGCTAT T . . . . T A . . . G .
blockSeqs : . . . A G . C . . . . A . . T . . . . . A . . . . C . . . . . . . . A T A G . A G . G . . GTC T AA . . C GGCATAGTGTTAT T . . . . T T . . . T .
blockSeqs : . . . . . . . . . . . . . . . . A . . . . . . . . A A T . T G . T . . AAC T A . . T GGCATACTATCAT C . . . . G T . . . G .
blockSeqs : . G G . A T . T . . GGT A A . . G GGCATACCAT T . . . . T T . . . G .
blockSeqs : G . T . . GA T A . . T ACCGTGC . . . . . T T . . . A .
blockSeqs : A . T . . GT T A . . C GTGC . . . . . T G . . . C .
blockSeqs : . . . . . C . . . TTG . . . . . A T . . . T .
blockSeqs : . . . . . T . . . C
blockSeqs : .
blockSeqCons : ***** T* A* GTC*** A**** T**
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNAAGTCCANTTTTAG-TATTTTAAAACATCG-ACAGGCTTGCCTCTGTC------TC-TCAT---AAAA-TC--G--CC-GCGCAGT-TT------TATA-CTAAAATTCATCGCATG-TTTAGTTTTCTTGGGACATTA--TAGATGTCGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGCN------ACTCATATTTT----CGTTTCTGATTCAGACGAATGACATTCACATTGACGTCACAAACGTTT-CCAAT-GACGTTGGTTGCTTAC-------TAATCAA-TATTGAGAACTTTTACGGCG--ATATAAGGCCTATC--TATT-GCTTTTCAGAGT-AATCA-TCTACAGAATGCTTTACAATTT-ACCAGC-ATTAC-A--TAAA-AAGTT-GATTTTAAATTCTT-AAAA-CGGG-TAT-TTAG-AACTGGAGGCCAATG-TTAACTTTATAATAAAAATTAAC-G-ACTCAA-TGCTCGNGGGCCTGCGTAGCTCAGTCGGTAA-CGCTCCGGACCTCCAACCGCG-ACGTCGTGAGT--------TCGACTCCCCGC-G-T--GGCGT-T---AACACAAATTTT---A-TT--TCTTCACGTA--TTTC------GGC-ATAGTGC--TAT-AGT-AC-TATTT-CGGCATA-GTGC-ACGGTCGCTACATAAATTCA-T-AGAACACTATGCGA--AAATGGTGGAA------TAGTGATTA-TATAGNGAGAAGCTA-ACAGGAAGCATAATA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNAAGTCCANTTTTAG-TATTTTAAAACATCG-ACAGGCTTGCCTCTGTC------TC-TCAT---AAAA-TC--G--CC-GCGCAGT-TT------TATA-CTAAAATTCATCGCATG-TTTAGTTTTCTTGGGACATTA--TAGATGTCGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGCN------ACTCATATTTT-----GTTTCTGATTCAGACGAATGACAT-CACATTGACGTCACAAACGTTT-CCAAT-GACGTTGGTTGCTTAC-------TAATCAA-TATTGAGAACTTTTACGGCG--ATATA-GGCCTATC--TATT-GCTTTTCAGAGT-AATCA-TCTACAGAATGCTTTACAATTT-ACCAGC-ATTAC-A--TAAA-AAGTT-GATTTTAAATTCTT-AAAA-CGGG-TAT-TTAG-AACTGGAGGCCAATG-TTAACTTTATAATAAAAATTAAC-G-ACTCAA-TGCTCGNGGGCCTGCGTAGCTCAGTCGGTAA-CGCTCCGGACCTCCAACCGCG-ACGTCGTGAGT--------TCGACTCCCCGCGTC---GGCGT-T---AACACAAATTTTA----TT--TCTTCACGTA--TTTC------GGC-ATAGTGC--TAT-AGT-AC-TATTT-CGGCATA-GTGC-ACGGTCGCTACATAAATTCAT--AGAACACTATGCGA--AAATGGTGGAA------TAGTGATTA-TATAGNGAGAAGCTA-ACAGGAAGCATAATA
Alignments
lowQualScore : 1 11 111111 111 11111 111111 33333 2222222 22222 2222222 1 3333 1 1 11111111 11111 22222222222222222222222 111111
lowQualScore : 1 1 3 44 999999 6 111 88 55555 6 1 6 999999 6 6 0 6 44444 3 2 4444444 0 88888 1 6 6 6 1111111 6 99 6 99 8 8 8 1 0 8 3 0 0000 0 0 0 8 0 6 6 6 6 2 6 1 1 888 1 5 1 1 4 5 4 44444444 777 66 0 66666 55 55 1 11111111111111111111111 55 3 3 3 3 0 2 333 55 000000 3 1 4
lowQualScore : . . . .. ...... . ... .. ..... . . . ...... . . . . ..... . . ....... . ..... . . . . ....... . .. . .. . . . . . . . . .... . . . . . . . . . . . . . ... . . . . . . . ........ ... .. . ..... .. .. . ....................... .. . . . . . . ... .. ...... . . .
lowQualScore : 0 0 3 22 222222 7 777 33 22222 7 0 7 222222 7 7 8 5 88888 2 5 0000000 8 00000 0 7 7 7 7777777 7 22 7 22 0 0 0 4 8 0 2 0 8888 0 0 8 0 8 7 7 7 7 5 7 7 7 333 6 7 0 9 4 5 0 55555555 333 55 7 44444 55 55 3 77777777777777777777777 88 6 6 6 6 4 2 888 00 555555 6 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNAAGTCCANTTTTAG-TATTTTAAAACATCG-ACAGGCTTGCCTCTGTC------TC-TCAT---AAAA-TC--G--CC-GCGCAGT-TT------TATA-CTAAAATTCATCGCATG-TTTAGTTTTCTTGGGACATTA--TAGATGTCGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGCN------ACTCATATTTT-----GTTTCTGATTCAGACGAATGACAT-CACATTGACGTCACAAACGTTT-CCAAT-GACGTTGGTTGCTTAC-------TAATCAA-TATTGAGAACTTTTACGGCG--ATAT-AGGCCTATC--TATT-GCTTTTCAGAGT-AATCA-TCTACAGAATGCTTTACAATTT-ACCAGC-ATTAC-A--TAAA-AAGTT-GATTTTAAATTCTT-AAAA-CGGG-TAT-TTAG-AACTGGAGGCCAATG-TTAACTTTATAATAAAAATTAAC-G-ACTCAA-TGCTCGNGGGCCTGCGTAGCTCAGTCGGTAA-CGCTCCGGACCTCCAACCGCG-ACGTCGTGAGT--------TCGACTCCCCGCG-TCGGCGT-TAACACAAATTTT---A-TT--TCTTCACGTA--TTTC------GGC-ATAGTGC--TAT-AGT-AC-TATTT-CGGCATA-GTGC-ACGGTCGCTACATAAATTCA-T-AGAACACTATGCGA--AAATGGTGGAA------TAGTGATTA-TATAGNGAGAAGCTA-ACAGGAAGCATAATA
Reference ( family-2802 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCNAAGTCCANTTTTAG-TATTTTAAAACATCG-ACAGGCTTGCCTCTGTC------TC-TCAT---AAAA-TC--G--CC-GCGCAGT-TT------TATA-CTAAAATTCATCGCATG-TTTAGTTTTCTTGGGACATTA--TAGATGTCGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGCN------ACTCATATTTT-----GTTTCTGATTCAGACGAATGACAT-CACATTGACGTCACAAACGTTT-CCAAT-GACGTTGGTTGCTTAC-------TAATCAA-TATTGAGAACTTTTACGGCG--ATAT-AGGCCTATC--TATT-GCTTTTCAGAGT-AATCA-TCTACAGAATGCTTTACAATTT-ACCAGC-ATTAC-A--TAAA-AAGTT-GATTTTAAATTCTT-AAAA-CGGG-TAT-TTAG-AACTGGAGGCCAATG-TTAACTTTATAATAAAAATTAAC-G-ACTCAA-TGCTCGNGGGCCTGCGTAGCTCAGTCGGTAA-CGCTCCGGACCTCCAACCGCG-ACGTCGTGAGT--------TCGACTCCCCGCG-TCGGCGT-TAACACAAATTTT---A-TT--TCTTCACGTA--TTTC------GGC-ATAGTGC--TAT-AGT-AC-TATTT-CGGCATA-GTGC-ACGGTCGCTACATAAATTCA-T-AGAACACTATGCGA--AAATGGTGGAA------TAGTGATTA-TATAGNGAGAAGCTA-ACAGGAAGCATAATA
gi|1 : GCGAAGTCCATTTTCAG-TATTTTAATACATCGGACAGGCTTGCCTCTGTC------TCGTCAT---AAAA-TC--G--CC-GCGCAGT-TT------TATA-CTAAAATTCATCGCATG-TTTAGTTT-CTTGGAACATTAATTAGATGTCCGGCCCTAAATA-----GTTTCGTCAGTCC-GAAACGATTAGGTT------ACTCATATTTTT----GTTTCTGAATCAGACGAATGACATTCACATTGACGTCACAAACGTTT-CCAAT-GATGTTGGTTGCTTAC-------TAATCAA-TACTGAAAAC--TTACGGCG--ATATAAGGCCTATC--TATT-GCTTTTCAGAGT-AATCA-ATCAAAGAATGC-TTACAATTT-ACCAGCAATTACAA--TAAA-AAGTT-TATTTTAAATTCTT-AAAA-CGGG-GAT-TTAG-AACTAGAGGCCAATG-TTAACTTTATAATAAAAA-TAAC-G-ACTCAG-TGCTTGTAGGCCTGCGTAGCTCA-TC-GTAA-CGCTCC-GACCGCCAACCGCG-ACGTCGTGAGT--------TCGACTCCCCGCGTTCGCCGT-TAACACAAATTTT---ATTT--TCTTCACGTA--TTTC------GGG-ATAGTGC--TAT-AGT-AC-TATTT-CGGCAT--GTGC-ACGGTCGC-ACATTAATTCA-TAAGAACACTATGCGA--AAATGGTGGAA------TAGTGATTAGTATAGGAGGAAGCTAGATAGGAAGCATAATA
gi|10 : taaatacattcttcatgattaaatctattgctaatttcatcatcttgatatatgtataattatatattaatataataatgctacattttgagttactatgccaaagatagtatcagggttttgacgcaatggtccacgagccgaaggcaagtggactaatgcgtcaaaaaccctgactactatttcaaattggcatagtacacgcaaaatgtaacatttattattattattgcttgagtgtccataatgtgcattaaaaataccaccactttgattgagCCTGCGTAGCTCAGTTGGTAA-CGCTCCGGATCGCCAACTGCG-AGGTCGTGAGT--------TCAACTCCCCGCG-TCGGCGT-CAACACAAATTTT---AATT--TCTTCACGTA--TTTC------GGC-ATAGTGC--TAT-AGT-AC-TATTT-CGGCATA-GTGC-ACGGTTGCTACATAAATTTG-T-AGAACACTATGCGA--AAATGGTGGAA------TAGTGATTA-TATAGGGAGAAGCTA-ATAGGAAGCATAATA
gi|11 : TGCGTAGCTCAATCGGTAA-CGCTCCGGACTTCTAATCGCG-ACGTCGTGAGT--------TGGACTTGGCGAA-ACGGTGA-AAATACAAATTTTA--A-TT--TCTTCATGTA--T-------------ACCGTGC----------AC-TATTT-CGGCATA-GTAC-ACAGCCGCTATATAAATTCA-A-AGAACAATTTCCAAATAAATGGTGGAG------TAGTGATTA-TGTAGTGGAAATCTA-ACAGGAAGCTTAATA
gi|12 : CCGGACCGCCAACCGCG-ACGTCGTGAGTAACTCAGTTCTACTCCCCACG-TTGGCGT-TAACACAAATTTT---A-TA--TCTTCATGTA--TTTC------GGC-ATAGTGT--TAT-AGT-AC-TATTT-CGGCATA-GTGC-ACGGTCGCTACATAAATTCA-T-AGAACACTATGCGT--AAATGGTGGAA------TAGTGAGTA-TATAGGGAGAAACTA-ACAGGAAGCATAATAc
gi|13 : GCCAAGTCCAGTTTTAGGCATTTCAGAATATCA-ACAGGCTTGCCCCTGTC------CA-TAATGAGAAGG-TCCAGTTCCAGCGAGGCGTT------CATG-CTAAAATTCATAGCATGTTTTAGTa
gi|14 : caTGGTTGCTTACTAGTTACTAATCAA-TATTGAGAACTTTTACAGCG--ATAT-AGGCC--------------------------TCA-TCTACAGAATGCTTTACAATTT-AC
gi|15 : AGGTTTGCTTCTGTTCCGCTGTC-CCTT---AAAACTC--A--CC-GAGTATT-TC------CGTAACTAAAATTGATGACATG-TTTAG-TTTCTTGaatcaactcgctgtaatgaagttctttttag
gi|16 : ccatcatactaagttATAAATTCA-T-AGAATACTATGCGA--AAATGCTGGAG------TAATGGTTA-TGTAGTGAGAAGTTA-ACAATAAGCATAATA
gi|17 : t-TATAGGGAGAAACTA-ACAGGAAGCATTATAa
gi|2 : gctccgctcaaacggtagtaccgtcaacatatTCA-ACAGGCTTGCCTCTGTC------TC-TCAT---AAA------------------T-TT------TATA-CTAAAATTGATCGCATG-TTTAGTTTTCTTGG-ACATTA--TA--TGTTGGTCCCTAAATAAAGCTGGTTCTTCGGTCCCGAAACGATTAGGCT------ACTCATATT-----------------CAAACGAAAGACAT-CACATGAACGTCA--AACGTTTTCCAATCGACGTTGGTTGCTTAC-------TA---------------CTTTACCGGCGCGATAT-AGGCCTATCCTTATTTGCTTTTCAGAGTGAATCAATCTATGGAATG-TTTACAATTTTACCAGC-ATTAC-AAATAAACAAGTTTGACTTTAAAT-CTT-AAAA-CGGAATATGTTAG-AACTGGAG--CAATGGTTAACTTTAAAATAAAAATTAAC-G-ACTCAGGTACTCATGG-CCTGCGTAGCTCAGTCGGTAAACGCTCCGGACCGCCA-CCGCG-ACGTCGTGAGT--------TCGACTCCCCGT---------------CAAATTTTTCTA-AT--TCTTCACGTAATCTTCG-----GGCAATAGTGC---ATAAGTAAC-TATTTCCGGCATACGTGC-ACGG----------------------ACACTATGCGA--AAATGGTGGAA------TAGTGATTA-TATCGGGAGAAGCTA-ACAGGAAGCATAATatatact
gi|3 : CA------ACTCATATTTTAATTTGTTTCTGATTCAGACGAATGACAT-CACATTGACGTCACAAACGTTT-CCAAT-GACGTTGGTTGCTTAC-------TAATCAA-TATTGAGAACTTTTACGGCG--ATAT-AGGCCTATC--TATT-GCTTTTCAGAGT-AATCA-TCTATAGAATGCTTCACAATTC-ACAAGC-ATTAC-AT-TAAA-AAGTT-GATTTTAAATTCTTAAAAA-TGGG-TAT-TTAGAAACTGGAGG-CAATG-TTCACTTTATA--AAAAATT-AC-A-GCTCAA-TGCTCATTGGCCTGTGTAGCTCAGTCGGTAA--G-TTCGGACC-ACAACCGCG-ACGTCGTGAGT--------T-GACTCCCTGCG-TTGGCGT-TAACACAAATTTT---A-TT--TCTTCACGTA--TCTCCCATCTGGT-GGTGTGCAGTAT-AGT-CCATAATT-CGGCATA-GTTG-A-GGTTGCTACATAAATTCA-T-AGAACAATATGC-A--GAATGGTGAAA------TAGTGATTA-TATAGAGAGAAGCTA-ACAGGAAGCATAAT
gi|4 : aCAT-CACATTGACGTCACAAATGTTT-CCAAT-TACGTTGATTGCTTAC-------TAATCAAATATTGAAATCTTTTACGGCG--ATCT-AGGGCTATT--TATT-GTTTTTCAAAGT-AATCA-TCTACAGAATGCTTTACAATTT-ACC-------------TAAA-AAGTT-GGTATTAAACTCTT-A----------------G-AACTGGAGGCCAATA-TTAACTATATTATAAAAATTAAC-A-ACATAA-TGCTCAAAGGCCTGCATAGCTCAGTCGGTAA-CGCTCCGGACCTCCAATCGCG-ACGTCGTGAGA--------TCGACTCACTGCG-TCGGCCT-AAACACAAATTTT---A-TT--TCTTCATGTA--TTTC------GGC-ATACTAT--CAT-AGC-AC-TATTT-CGGCATA-GTGC-ACGGTCGCGATACAAATTCA-T-AGAACACTATGCGA--AAATGGTGCAA------TAGTG
gi|5 : -AC-TATTT-CGGCATA-GTGC-ACGGTCGCTACATAAATCCA-G-AGA
gi|5 : TTTTAG-TATTCTAAAACATCC-ACAGGCTTGTCTCTGTC------TC-TCAT---AAAA-TC--G--CC-GCGCAGT-TT------TATA-CTGAAATTCATCGCATG-TTTAGTTTTCTTGGGACATTA----GATGTCGGTCCATAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGCA------ACTCAGATTTC-----GTTCCCGATTCAGATGAATGACAT-CACCTTGACGTCACCAACGTTT-CCAAT-GACGTTGGnnnnnnnnnnnnnnnnnnnnnnnnngttttttagtattctaaaacatccacaggcttgtctctgtctctcataaaatcgccgcgcagttttatactgaaattcatcgcatgtttagttttcttgggacattagatgtcggtccataaataaagctggttcgtcagtcccgaaacgattaggcaactcagatttcgttcccgattcagatgaatgacatcaccttgacgtcaccaacgtttccaatgacgttgg
gi|6 : actatttcggcatagtgcacggtcgctacataaatccagagannnnnnnnnnnnnnnnnnnnnnnnngtt-CGGG-TAT-TTAG-AACTGAGGGCTAATG-TTAACTTTATAGTAAAGATTAAC-A-ACGTAA-TGCTCGAGGGTCTGCGTAGCTCATTCAGTAA-CGTTCCGGACATCCAACAGCA-ACGTCTTCAGT--------TCGACTCCTCGCA-ACGGCGTAGAAAAAAAATGTT---A-TT--TATTCCTGTA--TGCC-------------GTGC----------AC-TATTT-CAGCATA-ATGC-ATGGTCGCTATATAAATTTA-T-AGAACACTATGCGA--AAATGA-GGAGTATATCTAGTGATTA-TTTAGCGAGAAGCTA-ACAGGAAGCATAATA
gi|7 : TCTT-AAAAACTGG-TAT-TTAA-AACTGGAGGCCAATG-TTAACTATATAATAAAAATTTAC-G-ACTCAA-TGTTCATGGGCCTGAGTAGCTCAGTCGGTAA-CGCTCCAAACCTCCAATTGCA-ACGTCGTGAGA--------TCGACTCCCCGCG-GTGGCGT-TAGAATAGATTTTA--A-TT--TCTCCACGTA--TTTC------GGC-ATA---C--CAT-ATT-AC-TATTT-CGACATT-ATG-------CGCTATATGAATTCA-T-AGAAGAATATGCGA--AAATGGTGGAA------TAGTGATTA-TATAGTTAGA
gi|8 : AGGCTTGTCTTTGTC------TC-TCAT---AAAA-TC--G--CC-GCGCAGT-TTAACTTTTATA-CTGAAATTCATCGCATG-TTTAGTTTTCTTGGGACATTA----GATGTTGGTCCCTAAATAAAGCTGGTTCGTCAGTCCCGAAACGATTAGGCCTAGGCAACTCATATTTT-----GTTTCTGATTCAGACGAATGACAT-CACATTGACGTCACAAACGTTT-CCAAT-GACGCTGGTTGCTTAC-------TAATCAA-TATTGAGAACTTTTACGGCA--ATAT-AGGCCTATC--T
gi|9 : AAAAATTAACCGCACGTAA-TGCTCGAGGGTCCGCGTAGCTCAATCGGCAC-CGCTCCGGACCTTCAACCGCGAATGTCGTGAGT--------TCGACTCC---CG-T-GGTGT-TATTA-AAATACT---C-TTAATCTTCCCATA--TCCC-----------T--TG-------AG--AT-TATTT--GTAATC-GGGCAACGGCCGCATTATAAATTAAGT-AGAACGCTATGCGA--ATTTGTCTTAG------TAGTGGTTA-TATAGCGAGATGCT---TAGGGA--ATAACA