lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111
lowQualScore : 111 2222 1111 44 1 111111 1111111 22222 11 1 000000000000000000000000000000000000000000000000000000000000000000 111 3333333333333333333333 1 111111 111111 111 111111 1111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 22 222 22 22 222222222 11 1 1 333333333333333333 1 444444 1 22 222 222 1 222 1 1 22 1111 222 222 444444444 111 11 222222 1111 22222222 333333333333333 111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 3 1 1 33 22222 1 1 11 33333 1 333 11 22222 44444444 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 333333333 111 11 1 555555555555 1111 444 66666666666 1 1 6666666666666666 2222 111 444444444444444444444 1 7777777777777777777777777 2 88888888888888888888888888888888888888888888888 1 4
lowQualScore : 5 5 555 5 2222 3 777 0000 66 66 5 1 4 222222 3333333 4 4 66 0 99999 4 1 4 66 66 888 5 4 33 0 0 777 6 5 5 5 5 5 5 0 999999999999999999999999999999999999999999999999999999999999999999 2 99 111 6 6666666666666666666666 6 3 888888 222222 6 6 6 555 999999 7777 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 44 66 111 33 77 111111111 2 33 0 0 777777777777777777 3 000000 0 00 222 111 0 333 0 0 3 00 4444 444 9 000 000000000 111 3 11 111111 3 6666 3 2 66 77777777 7 222222222222222 777 1 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 88 1 7 3 2 0 44 11111 0 0 33 3 66666 6 111 3 0 8 8 8 11 0 8 00000 8 6 11111111 7777 66 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 888888888 8 8 8 8 8 444 3 88 0 3 444444444444 2 7777 444 00000000000 2 6 7 3 0000000000000000 77 2222 000 333333333333333333333 6 0 3 1111111111111111111111111 4 2 22222222222222222222222222222222222222222222222 6 5 0 6 6
lowQualScore : . . ... . .... . ... .... .. .. . . . ...... ....... . . .. . ..... . . . .. .. ... . . .. . . ... . . . . . . . . .................................................................. . .. ... . ...................... . . ...... ...... . . . ... ...... .... ....................................................................................................... .. .. .. ... .. .. ......... . .. . . .................. . ...... . .. ... ... . ... . . . .. .... ... . ... ......... ... . .. ...... . .... . . .. ........ . ............... ... . ........................................................................................... .. . . . . . .. ..... . . .. . ..... . ... . . . . . .. . . ..... . . ........ .... .. .................................................................................................................................................................................................................. ......... . . . . . ... . .. . . ............ . .... ... ........... . . . . ................ .. .... ... ..................... . . . ......................... . . ............................................... . . . . .
lowQualScore : 0 0 666 0 9999 2 222 6666 22 99 4 9 4 888888 0000000 4 4 11 9 99999 4 9 8 11 99 888 0 5 88 1 4 111 0 0 0 0 0 0 0 0 444444444444444444444444444444444444444444444444444444444444444444 5 22 333 7 2222222222222222222222 7 3 555555 888888 7 7 7 444 666666 0000 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 88 00 88 000 88 55 000000000 5 22 0 0 555555555555555555 3 000000 0 22 888 000 0 222 0 0 2 88 8888 000 2 888 888888888 000 2 00 000000 2 5555 2 5 55 11111111 3 333333333333333 777 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33 7 3 3 5 0 00 88888 0 0 88 0 88888 0 000 2 8 0 0 0 00 8 0 00000 0 7 00000000 2222 22 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 222222222 0 0 0 0 0 000 2 88 0 2 222222222222 0 8888 888 55555555555 0 7 3 3 3333333333333333 33 7777 000 000000000000000000000 7 0 8 8888888888888888888888888 0 5 55555555555555555555555555555555555555555555555 0 0 0 0 0
consensus : TTTTGCAA-C-CA---T-TTCG--TGTA-T-T----TTCATG--ATATTTTTACCTTTAT-TCAG-CG---ACC-------AT-A-TAT--TTTCCGA-TT--ACA-ACGCGATCCC--TAC--T---T-TCCA--TTTCGATCGAGCGT-G-GTTAATCTG-A-G-AG-TTA-T-CG-CCCT--A---AT---TNACTTTTCGTT--T-G----A----CACGCGCA-----G-AA-AANTT-G-GT-GGTG--ATTCTGAN--T-TGTT--G--A-ACTCTAAA-CTT--AGG-A-TT---T--ACCC--AAA-TTA-TC-AATT-AA-CGAACA-NNT--AGTC----AGCGTGCAGGGT-G--GTGGAGTCATTCCGATA--AAC---CCC--GAGTTG-----T-TTGT-------TTA--ACGAAATC--AT-GGA-T-C-AT-GT-AAT--GA--AACAA-TGGCTT-TGTTATCC--AAGGT--GTGAAATTTTCGA--CTG-A-CTTTGAGA-ATTG-TA-GG---TANAT--GGTGCGA-AA-CCTGGTG-----ACCCA-TTATANTCCC--TAC-A-TG-GAA-A-ATTA-AC-CTG-GCTG--T-GAC--GCAAAA--TTAG-A-TCA---AG-A-CTGTGCATGGGAC-T---GATAAAAACT-TAGAAAACTGGATTATTTGCGA-CCTTTCCTAA-ACGA-ATNTC--GT-A-GTTTCCA-----A-G-AAT--A-TTTTAA---AG-GTAGA----CATGAC--GACTAG--AGTT-CAC-T-TCAA-CATATTA-GA----GTTG----TCGA--CAC-ATCC-AGC-TAAAGAAAG-CCG--CCTGCA-TTAGTT-CAAA--ACTGTGTACA---ATGAAATAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTA-T--GTG-TAT-TAATAAAATTACAAGTA-TATACACGTGTA--AATA--TTCTT---T--------------A-C---AAT-A-----GAA-----TGNTTTGC----ATGCA----T-TTCATA-AAT--GAAGANGTT-----ATA------TAT---AATACAATNTTTTGT-----T-TN---AAACTATG--A-AA--CAACATAA-TT----------ATT-TT--------ATTTTAGATTTT---T-----A-A-C-ATT-ATTAATTTTGTC-TTAC---TGTTAAAC-C-CCATACTTG-T-AT---C--CCAAATAC---ATGATCATTTTTCTCC-ATGTGANGCACATTTCGTGTATTAT-ACCATT-CGCTGA-A-AGC--TTTCACTTCCA--A-AAATAGCGAC---CTGT-------CA----TATT-T-GCCTTTT-CCAANTCTCCGATGGATAAG-GTCTA-----T-C-----TTAATACAGGTTTGACTGTATNTTAAAAAAGTATAGTNNTAAACCACGCTNCATGTAAATACCTGCAGAATCCACATGATAGAAGGTA
Reference ( gi|2 ) : TTTTGCAA-C-CA---T-TT-G--TGTA-T-T----TTC--G--ATATTTTTACCTTTAT-TCAG-CG---ACC-------AT-A-TAT--TTTCCGA-T---ACA-ACGCGATTCC--TAC--T---T-TCCA--TTTCGATCGAGCGT-G-GTTAACCTG-A-G-AG-TTA-T-CG-CCCT--A---AT---TCACTTTTCGAT--T-G----A----CATGCGCA-----G-AA-AAGTT-G-GT-GGTG--ATTCTGAT--T-TGTT--G--A-ACTCTAAAACTT--AGG-A-TT---T--ACCC--AAATTTA-TC-AATT-AA-TGAACA-GGT--AGTC----AGCGTGCA-GGTCG--GTGGAGTCATTCCGATA--AAT---CCC--GAGTT------T-TTGT-------TTA--ACAAAATC--AT-GAA-T-C-AT-GTCAAT--GA--AACAA-TGGCTTGTGTTATCC--GAGGT--GTGAA--TTTCGA--CTG-A-CTTTGAGA-ATTG-TA-GG---TAGATTAGGTGTG--AA-CCTGGTG-----ACCCA-TTATTATCCA--TAC-A-TG-GAA-A-ATTA-AC-CTG-ACTG--T-GAC--GCAAAA--TTAG-A-T-----AG-A-CTGTGCATAGGAC-T---GATAAAAACT-TAGAAAACTGGATTATTTGCGA-CCTTTCCTGA-ACGAGATATC--GT-A-GTTTTCA-----A-G-AAT--A-TTTTAATATAGTGT-------CTTGACCGGACTAGC-AGTT-CAC-T-TCAA-CATATTACGA---TGTTG----TTGA--CACAATCC-AGC-TAAAGAAAGCCCG--CC-GCA-TTAGTT-CAAA--ACTGTATA-A---ATG-AATAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTA-T--GTG-TAT-TAATAAAATTACAAGTA-AATACGC-TGTA--AATA--TTCTT---T--------------A-C---AAT-A-----GAA-----TGTTT-GC----ATGCA----T-TTCATA-AAT--GAAGATGTT-----ATA------TAT---AATATAATTTTTTGT-----T-TA---AAACTATG--A-A---CAACATAA-T-----------ATT-TT--------ATTTTAGATTTT---T-----A-A-C-ATT-ATTAATTTTGTC-TTAC---TGTTAAAC-C-CCATACTTG-TAAT---C--CCAAGTAC---ATGAT-A-TTTTCTCCAATATGAAGCACATTTCGTGTATTAT-ACCATT-T-CTAA-A-AGC--ATTCACCTCCA--A-AAATAGCGAC---CTGT-------CA----TATTGT-ACCTTTT-TCAAGTCTCCAATGG--A---GTC-------T-C-----TTAATACAGG-TTGACTGTATGT--GCAAAGTA-AATTTTAA-----GTTTTAT-T---TACCTG-----TTCACCTGA-AGGAGATAT
gi|1 : TTTTGCAAAC-CACC-T-TC-A--TGTAGTAT----TTC--GTCATATATT-ACCTT-AT-TCAG------ACC-------AT-A-TAT--TTTTCAA-TT--ACA-CC----TCCC--TAC--T---TATCCA--TT-CGATCG-GC------TTTATCTG-A-GCAGATTA-T-CC-CCCT--A---A-----CACTTTCATTT--T-G----A-----ACCC-CA-----C-AT-AATTT------------AATCTATC--T-TGT---G--C-ATTCTAAA--TC--AGGGA-TT---T--ACCC--AAATT-A-TC-AATT-A---GAA-A-ATT--AGTC----AGC-TGCA-GAT-GACGTGGAGTCAT-CCAATA--AAC---CCC--GCATTG-----TGTTGT-------T-A--ACCAAATC--AC-GTA-T-CCAT-GT--------------A--GGCTT-TGT-ATCC--AAGCTTAGTGAA--TTTCGA--CTG-A--TTTGAGACATTA-TA-GGTTATACAT--AGTGTGAAAA-CCTCGTG-----ACCCA-TTATATTCCC--TAC-ACTG-GAACA-AATA-AC-CTG--CTG--T-GAA--GC-AAA--TTAG-A-T-----AA-A-CTGGACAT-GTACAT---GAT-AAAACT-TAGAAAACT-GATTATAT-C-A-CC-TTCCT-A-ACA----ATC--GT-A-AGTTTCA-----A-G-AAA--A-TTTAAA---AG--------------------CTA--------CAC---------ATATTAAGA----GTTG----TTTA--CAC-ATCCAAGC-TAAAGAAAG-CTG--CCTTCA-TTAGTT-CAAA--ACTGTGTA-CT--TTG-AATAT---TGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-CCCAGCATTA-T---TG-TAT-AAATGGAG----AAGCA----ACAC-T-TC--ATTACTTTCTT---TCTATCATGAGAGGCA-CATTAAT-A-----AAA--------TT-AC----AAGTA----T-AT-ACA-ATT--GTAAATATT-----CTT------TAC---AATAAAATGTTTTGCATGCAT-TACATAAA-TAAG--A-GGTTAAATATAA-TTTTTGTTATCAATT-TTGAAACAACATATTATATTTTAGATGTTTAA-A-C-ATT-ATTAATTTTGTC-TTAC---TG-TAAAA-C-CCATACTTG---AT---CATCCAAATAC---ATGATCA-TTTTCTCC---ATTGAGCCCATTTTGTGTATTAT-GCCATT-TGCTAA-A-CGC--TTTCACTCCAA--A-AAATAG
gi|3 : tgaaatactatgacacagaatgcacattcagaactgctacagtcaaaactgccatagcgacccacctgtgtaacacccactcacatgttgaccataaacaaattcccccaacgtaccctataactattactaattatacgacactgtactgaccgcgacaacgaccatgatTCTTGCAA-CTCA---T-TT-GCGTGTA-T-T----TTCTTG--ATATT---ACCTT-ATATCAGTCG---ACC-------ATTA-TAT--TT--CGA-T---TCA-ACGCGAT-CC--TAC--TCCAT-TCGA--TTTCAA--GAACGT-G-GTTAATCTG-AAG-AG-TTA-TTCG-CCCT--A---CCCTGTGACTGTTCGATCTT-G----AACCGCACGTGTA-----A-TA-AGTTT-G-ATCGGTGTAATTC-GAAAAT-TGTG--G--A-ATTCTAA---CT--AGG-A-TT---TT-AGCC--AA--TTAGTC-AAT--AA-CGAACA-GGT--AGTC----AGCGT---------------------------A--AA----CCC--ATGTG------T-TTGT-------TTGTTACAAAATC--A--GGA-T---AT-GT--ATTGGA--AACAA-CGGCTT-TGTATTCC--AAGGT--GTGGAATTTTCGAACTTG-A-GTTT-AGA-ATTGATA-GGG--TAGATACGGTGTA--AAATCTGGT------ACGCAGTTAT-ATTCC--TAA-A-TG-GAA----TTA-AC-C-A-ACTG--TTGACT-GCCAAA--TAGG-ACT-----AA-AGCAGTGCATGGGA--T---GCTAAGTACTGTAGAAAACTGGAT-ATT-GCGA-CCTTTCTAAG-ACGAGATGTCCGGT-ACGTTTCTA-----ACG-AAT--AATTTTAA---AGTGTAGA----CATGACAGGACTAAG-AGTTTCAC-T-TCAAACATATTACGAGTCTGT------TTGAAGCAC-ATCC-A-C-TAAAGAAAG-CTG--CT-GCA-TTAGTT-CAAA--ACTGTGTA-ACACAGGAAATCC--GTGTGGTTTATTCTA-A-TGTCTT--TTATTGCAT-----TTGAAATAAATTCTCCAGCATTgcaac
gi|12 : attTTTTGCAA-C-CA---T-TTCG--TGTA-T-T----TTCATG--ATATTTT-ACCTTTAT-TCAG-CG---ACC-------AT-A-TAT--TTTCCGA-TT--ACA-ACGCGATTCC--TAC--T---T-TCCA--TTTCGATCGAGCGT-A-TTTAATCTG-A-G-AG-TTA-T-CGCCCCT--A---A-----CACTTTtatttttttttttttttttttttttttgtataaatggagaagcatactcttcaaatatctttctttcttatcactgagaggatatgtaataaaattacaagtatagtacacgtgtacgaattgtcttacgaaatcatatggttgcagcatgttcataaataagagtgtaaaatataacttttgttatcaaattatgagagaaccaaatatctttagatttttacacattataatttttgtctttcctgttaaacgcctatacttgatcatcgcaagtaattgatcatttttctccattgacggacatttcgtgtttataacatttgctgatacagctttttcactccaagaaaaggcgacct
gi|5 : gatTTTTGCAA-A-CA---TATT-A--CG-A-T-TCGATTTCATG--ATATTATTAACTTTAT-TCAG-TG---ACCCATTTCTAT-A-TGTAGTTTCCGATT---ACA-G---GAGTCCTGTACGTT---C-TCCATGTTTCGATCGTGCGT-ATGTTAATCTGAA-G-AG-TTATT-CG-CCCTCGAGATGT---TCG-TTTTTGA----------------ATGCGCATGTATG-AA-GTTTT-G-GT-G--G--ATTCTGAT--T-TGCTTGG--A-ACTCGGTAACTTC-AGG-A-TTGTAT--ACCCCAAAATATA-TCAAATTAAA-CGAACA-TTTGAAGTCGACAGGCGTGCA-GGTGT--GAGGAAAAATTTCAATAATAATATATAA--GAGTTG-----T-TCGTTATATTGTTA--ATGAAACA--ATAGGA-TGC-ATAGTAGATA-GATTAACAATTGGCTTA-GTTATACTAGAGGT--GTGAAATTTTCGA---TG-AGCATGGAGA-AATG-TA-GG---cgtttt
gi|8 : atTTTGGCAA-C-CGATGT-TC-G--TG-A-T-T----TTCT-G--AT--TTTTACCTTTAT-TCAG-CGA--ACC-------AT-ACTAT--TTTCCGA-TTAAGCACACGCGATCCC--TAC--T---T-TATGATTTTCGATTGAGCGTGG-GTTAATCT----G-AG-TTA-T-CG--CCT--A---AT---TGAC-TTTCG-T--T-G----A----ggt
gi|6 : atagtacagtcaaaactgcaatatgcgacctactgtattaagcgactcactgtcacaggtgtgaccataaacattccccccaaagcgttaccctatatttacctgtattaaacgacactgtctgacgcgaccacgaccatgataTTTTACAA-C-CA---T-TTCA--TGTG-A-T----TTCATG--ATATATT-ACCTTTAT-CTAA-CA---ACC-------AT-A-TAT--TTTTCGATT---ACC-ATACGATCCC--TAA--T---T-TTGA--TTTCGGTCGAGCTT-G-GCTAATTGG-A-G-AC-TTA-T-CG-TCCC--A---A----AAACTTTT-GTT--T-AAACTA----CATGGGT--------TA-TGGTTCG-TT-GGTG--ATTTTGTA--T-TGTT--GGCA-ACTGTAA----TGGAGG-ATTT---T--ATCC---TACCTA-TC-AATT-aac
gi|24 : ataaaataatgcctatagatgaacacttagaaatacagtaaatctgctatagcggcccactgtattaagcaactcactgtatgaccgtaaaattccccttcccccctggcgttaccctatatattgcattaaacaaccacctgtctgacgcgactaacggccatgatTTTTGCAA-C-CA---T-TTCG--TATA-T-T----TTCACG--ATATTTT-ACCTTTAT-TCAG-CC---ACC-------A
gi|15 : atTTTTACAA-C-CA---T-TTCG--TGTA-G-T----TTCATG--AAAATTTT--CCTTAT-TTAA-CAATTACC-------GC-A-TAT--TTTTGTATT---ACA-ACAT-ATTCC--
gi|16 : tgatgcaaccaacgaacaggatTTTTACCTTTAT-TCAG-TG---ACC-------AT-A-TAT--TTTACGA-TT--ACA-ACGCGATCCC--TAC--T---T-TCCA--TTGCGATTGAGCGT-G-GTTAATCTG-A-G-AG-TTA-C-CACCCCT--A---A
gi|9 : G---ACC-------AT-A-TAT--TTTCCGA-TT--ACA-ATGCGATCCC--TAT--T---T-TC-A--TTTCGATTGAGTGT-G-GTTAATCTG-A-G-AG-TTA-T-CG-CCCCTAA---AT---ATAACTTTCGTT--TTG----A-----ACGCGCAC----GTAATAAGTT-TTAT-GGTG--ATTCTGAT--T-TGTT--G--GCATTCT-AAACTT--AGG-ATTT---T--ACCC--AAA-TTA-TC-AAGT-AA-GGAACA-TGT--AGTC----AGCGTGCAGGGTTGT-GTGGAGTCA-TCTGATA--AAC---CCT--GAGTTGTTG--T-TTGT-------TTA--ACAAAATC--TT-G-G-T-C-AT-GT-ATT--GA--AACAA-TGGCTT-TGTTATCC--c
gi|4 : -AAGTT-ATGT-GGTG--ATTCTGAT--TCTGTT--G--GCAC-CTACACTTC--GGG-A-TT---TTTACCC--AAAATTA-TC-AATT-AACTGAACATAAT--AGTC----A-CGTGCAGGGTC---GTGGAA-CA-TCCGATA--AAT---CTCAGAAGTTCGGCTGT-TTGT-------TAA--CCAAAATCTTAT-GGACT-C-AT-GT-AAT--G---AACAA-TGCTTTGTA-TATCTA-AAGGTG-GTGAA--TTCCGA--CTGTA-CTTTGAG--ATTG-TAGGG---TGAAATAGG-GCGA-AA-CCTGGTGATCACACCTA-TTGATATTCACCTACAA-TGTGAA-ATATTACACGCTGTGCTGTTT-GACAAGCAAAGATTTAGCA-TCATTAAGAA-CTGTAC-TATGAC-TAGGGATAAAA--C-TAG-AAACTGGA-TA--TGTGATCCTTCCCTAATACGA-ATTCC--GTAA-GTTTCCATCATTA-GAAATAAA-TTTTAAGGAAG-GTAGAACCACATGACCTGAC-AGCTAGTT-CACATATCAA-CATATTG-GA---GATTGATGATCGA--CACCA-CC-AGCTTAACGAAAA-CCGTTCT-GCATTTAGTTACAAACTGCTGTACA-G---ATGAAATATTAGT-TGGTTTATT-TATA-TGTCTTAATCAA-G-ATGAATATTG-AATAAATT-TCCAGCATTA-T------TGT-CATTAAAAGGAGAAGCA----ACAC-TTCA--TACT--TTCTTTTCT--------------ATC---AATGA-----GAGGCTACTGGTT-ATAAAGATACAACAGT-ATCATACAATACGGAACTGTTTGCAAATAGCAGGTTATTAAAATACGATATTTT-T-----T-TATC-AAGCTATGAAA-A---CAACACAATT-----------ATTATT--------ATTTTAGATTTT---A-----A-A-CAATTAATTAATTTTTTG-TTACTCATGTTAAAC-CACCATAC-TG-TGATATAC--TCAAATATACAATGAT-ATTTTTCTCCATTGTG----ACATTT-GT-TATTATAACCATTGC-CT---A-AGC--TTTCACTTCCAATA-AAATAGCGAC---CTTTAAGAGACCACTTCTATGCT-GCCTTTT-CAAAGGCTCC-ATGG--ACTGGTC-------TCC-----TTAATACAGG-TT
gi|18 : -TTATATTCCC--TAC-AATG-GAA-A-ATTT-AC-CTG-GCTG--T-GAT--GCAAA---TTAG-A-TTA---AG-A-CTGTGCATGAGAC-T---GATAAAA-CT-TAGAAAACTGGATTATT
gi|20 : GC-TAAAGAAA-CCCG--CCTGTA-TGAGTT-CAAA--ACTGTGTACA---ATG-AGTAT---CATGGTGTA------A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-T
gi|10 : atGTGTACA---ATG-AATAT---TGTGGTTTATT-TA-AGTGTCTT--TCAATG-AT-----TTG-AGTAAATT-TTCAGCATTATT--GTA-TAT-T-ATAA
gi|10 : TT-TCTATCATGA-GAGGTGCTGT-TA-TAAAATTACAAGTA-TATATATGTGTA--AATA--TTCTT---T--------------A-C---AAT-ACGGTAGAA-----TGTTTTGC----ATGCA----T-TTCATA-AAT--AAggagaagcaacacttcattactttctttctatcatgagaggtgctgttataaaattacaagtatatatatgtgtaaatattctttacaatacggtagaatgttttgcatgcatttcataaataa
gi|3 : gtgtacaatgaatattgtggtttatttaagtgtctttcaatgatttgagtaaattttcagcattattgtatattataaggagaagcaacacttcattactttc-TATGTAATAAAATTACAAGTATAGTACACGTGTACGAATT--GTC-T---T--------------A-CGA-AAT-C-----ATA-----TGGTT-GC----A-GCA----TGTTCATA-AAT---AAGA---------GTG------TAA---AATATAA-CTTTTGT-----TATC---AAATTATG--AGA---GAACCAAA-T-----------AT-------------CTTTAGATTTT---T-----ACA-C-ATT-ATAATTTTTGTCTTTCC---TGTTAAACGC-CTATACTTGATCAT---C--GCAAGTAA---TTGATCATTTTTCTCC-AT-TGACGGACATTTCGTGT-TTAT-AACATT-TGCTGATACAGCTTTTTCA-CTCCA--AGAAAAGGCGAC---CT
gi|7 : atttcttgcaactcatttgcgtgtattttcttgatattaccttatatcagtcgaccattatatttcgattcaacgcgatcctactccattcgatttcaagaacgtggttaatctgaagagttattcgccctaccctgtgactgttcgatcttgaaccgcacgtgtaataagtttgatcggtgtaattcgaaaattgtggaattctaactaggattttagccaattagtcaataacgaacaggtagtcagcgtaaacccatgtgtttgtttgttacaaaatcaggatatgtattggaaacaacggctttgtattccaaggtgtggaattttcgaacttgagtttagaattgatagggtagatacggtgtaaaatctggtacgcagttatattcctaaatggaattaaccaactgttgactgccaaataggactaaagcagtgcatgggatgctaagtactgtagaaaactggatattgcgacctttctaagacgagatgtccggtacgtttctaacgaataattttaaagtgtagacatgacaggactaagagtttcacttcaaacatattacgagtctgtttgaagcacatccactaaagaaagctgctgcattagttcaaaactgtgtaacacaggaaatccgtgtggtttattctaatgtcttttattgcatttgaaataaattctccagcatttatttttttttttttttttttttttttgtataaatggagaagcatactcttcaaatatctttctttcttatcactgagagga-TAATAAAATTACAAGTA-TATACACGTGTA--AATA--TTCTT---T--------------A-C---AAT-A-----GAA-----TTTTTTGC----ATGCA----T-TTCATA-AAT---AAGAGGTT-----AGA------TAT---AAT------TTTTGT-----T-AT---CAATTATG--A-AA--CAACATAT-T-----------AT------------ATCTTAGATTTT---TC----A-A-C-ATT-ATTAATTTTGTC-TTAC---TGTTAAA--C-CCATAATTG---AT------CCAAATAC---ATTATCG-TTTTCTCC-AT-TGAGAC-CATTT
gi|17 : tagtttatttaatgtctttaatttccagcattattctataaaaagagaagcaactcttcattactttctttctatcatgagagttactg-AAT---AAGAGGTT-----ATA------TA----AATACAATTCTT-GT-----T-AT---CAACTATG--A-AA--CAACTTAA-TT----------ATT-AT--------ATTTTAAATTTT---T-----A-AAC-ATT-ATTAATTTTGTC-TTAT---T
gi|14 : cAGCGACTCACTGT-------CA----TATTTT-ACCTGTT-TTAA
gi|11 : tgataaactaatgtagatcttatcaagtacagtcaaaactgccatagcgacccactgtattaAC---CTGT-------CA----TAT-GTGACCTTTTTTCAAGTCTCTGATGG--AAG-GTC-------T-C-----TTAATACAGGTTTGACTGTATTTTAAAAAAGT--AGTGTTAAACCACATTTCATGTAAATACCTGCAGAATCCACATGATAGAAGGTAacaaccacctgtctgacgcgaccaa
gi|21 : tgtattaagagaccAC---CTGT-------CA----C-TT-----CTTTT-CCCATTCTCCAATAGATA---GTCTATTATTT-A-----TTAGTACAAATTTGACTGTA
gi|22 : tgtattaagagaccC---CTGT-------CA----C-TT-----CTTTT-CCAATTCTCCAATAGATA---GTCTA-----T-CATTTATTAGTACAAATTTGACT
gi|19 : tgtattaagagactg---CTGT-------CA----TAGTGT-GCCTTTT-TCAA-TCTCCAATGG--AAG-GTC-------T-C------TAATACAGG-TGAACTGTATGT--------TATAATTATAA-----GCTACAT-T---
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TACAGTTTAGACTGCAATTGTGCACAAACCCACTGTATAAGCAAGTCACTGTTATATGTGACCATGAAAATTCCCTGCAAGGCATTACCCTATGTGTTGTACCTGTATTAAATGATCACCAGTCTGATGTGACCAAG
Unaligned ( gi|23 ): ACATAAAAATAAGACAATGCAACATTTAAAGTACAGTCAAAACTGCCATAGCGACCCA
Unaligned ( gi|25 ): CACGACCAACGACCATGATTTTTGCAACTGTTTCGTGTATTTTCATGATA
Unaligned ( gi|26 ): TACAGTCAAAACTGCCGTAGCAACCCACTGTATTAAGCGACTCACTG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 111 1111111 11 11 333333 11 4444444444444444444444444 11111 1111 111111 222222 11 1111 2222222 11111 3333333333333333333333333 2222222 11111 1 222222222 11 22 111 11 22222 22 11 22222 2 111 11 11 1 11 22222222 111 1 1 111 2222 11 2 2222222 222222 1111111111111111111111111111111111111111111111 222 1 111 3333 11 1 1 11 1 1 222 11111 22222 1 11 11 4444444444444444444 11111 111 1 2 1 11 2222222222222 1111 5555555555555555555555555 11111 2 111 11 4444444444 111 222 33 2222 1 11 11111 11 11 555555555555555555555555 66666666666666666 44444444444 1111111 22222 22222 1
lowQualScore : 4 4 4 8 4 0 4 4 8888 4 2 8 4 4 000 1111111 4 4 55 55 4 4 66 777 4 2 22 555 4 4 4 4 4 4 8 00 555555 3 33 5 1111111111111111111111111 22 00000 0 77 888 5 999 8888 77 5 999999 5 000000 77 22 5 5 5 5 77 888 99 4444 2 6666666 3 55555 6666666666666666666666666 6 6 1111111 3 4 22222 6 3 6 6 111111111 3 6 6 6 6 8 8 11 8 55 444 8 33 88 8 8 33333 1 77 2 33 2 55555 8 8 1 8 4 8 0 8 8 8 8 222 8 11 99 5 11 22222222 8 8 66 8 444 0 0 8 0 11 66 2 2 0 3 111 4444 33 0 6666666 222222 9999999999999999999999999999999999999999999999 444 0 111 1111 2 33 0 0 8 8 11 0 8 6 6 3 5 1 444 1 5 5 5 77 1 5 44444 5 5 00000 6 6 5 0 999 0 11 11 1111111111111111111 66666 99 444 1 6 2 0 6 22 6 0 3 33 5555555555555 2222 3 3 2222222222222222222222222 66666 0 6 6 6 6 111 0 33 8 8 1111111111 444 444 8 11 5555 6 2 3 0 77 88888 33 2 33 000000000000000000000000 7 9 44444444444444444 7 8 1 22222222222 0 22 5555555 1 77777 66666 3 5
lowQualScore : . . . . . . . . .... . . . . . ... ....... . . .. .. . . .. ... . . .. ... . . . . . . . .. ...... . .. . ......................... .. ..... . .. ... . ... .... .. . ...... . ...... .. .. . . . . .. ... .. .... . ....... . ..... ......................... . . ....... . . ..... . . . . ......... . . . . . . . .. . .. ... . .. .. . . ..... . .. . .. . ..... . . . . . . . . . . . ... . .. .. . .. ........ . . .. . ... . . . . .. .. . . . . ... .... .. . ....... ...... .............................................. ... . ... .... . .. . . . . .. . . . . . . . ... . . . . .. . . ..... . . ..... . . . . ... . .. .. ................... ..... .. ... . . . . . .. . . . .. ............. .... . . ......................... ..... . . . . . ... . .. . . .......... ... ... . .. .... . . . . .. ..... .. . .. ........................ . . ................. . . . ........... . .. ....... . ..... ..... . .
lowQualScore : 0 0 0 0 0 8 0 0 5555 9 0 1 0 0 000 8888888 0 0 55 55 0 4 11 888 4 9 22 222 4 4 4 4 4 4 9 66 444444 2 88 7 2222222222222222222222222 11 66666 7 99 999 7 333 0000 99 7 333333 7 333333 99 99 7 7 7 7 77 777 22 2222 5 0000000 2 33333 3333333333333333333333333 7 7 7777777 5 8 88888 7 3 7 7 222222222 2 7 7 7 7 0 0 00 0 88 222 0 00 88 0 0 00000 0 55 0 22 5 00000 0 0 0 0 0 0 8 0 0 0 0 000 0 00 00 4 00 22222222 0 0 44 0 000 6 8 0 8 66 88 5 5 0 2 888 8888 88 0 0000000 222222 8888888888888888888888888888888888888888888888 888 0 000 2222 0 88 0 0 0 0 22 8 0 7 7 3 5 7 222 0 7 7 7 99 4 7 33333 7 0 88888 7 7 7 8 888 0 00 00 0000000000000000000 77777 22 000 7 7 5 9 7 00 0 3 7 00 2222222222222 7777 5 5 0000000000000000000000000 77777 0 7 7 7 7 777 8 00 0 0 6666666666 000 444 0 22 2222 5 5 2 0 00 55555 88 5 88 222222222222222222222222 5 0 33333333333333333 3 0 0 77777777777 7 00 7777777 0 55555 55555 0 5
consensus : TTTTGCAA-C-C-AT-TT-CGTGTA-T-T----TTCATGATATTTTTACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ACGCGATCCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-G-GTTAATCTG-A-G-AG-TTA-T-CG-CCCT--AAT---TNACTTTTCG--TTT-G----A----CACGCGCA-----NA-AAGTTTG-GT-GGTG--ATTCTGAT--T-TGTT--G--A-ACTC--T-AAACTT--AGGA-TT---TT-ACCC--AAA-T-TA-TC-AATT-AAC-GAACANG-T--AGTC----AGCGTGCAGG-G-TG--GTGGAGTCATTCCGATA---------AACCC-C-GA------GTT-GT-TTGT-------TTAACAAAATC--AT-GGA-T-CAT-GT-A-AT-G-A--AACAA-TGGCTT-TGT-TAT-CCA-A-GGT--G-TGAAATTTTCGA--CTG-A-CTTTGAGA-ATTG-TA-GG---T-AGAT--GGTGTG-AAACCTGGTGA-----CCCA-TT-ATATTC-CCTACAATG-GAA-A-ATTA-AC-CTG-GCTG-T--GAC--GCAAAA--TTAG----ATTAAGA-CTGTGC-ATGGGAC-T---GATAAAAACT-TAGAAAACTGGATTATTTGCGA-CCTTTCCTAA-ACGAGATNTC--GTA-GTTTCCA-----A-GAA-T-A--TTTTAA-G-AGTGTAGA----CATGACCGGACT-AGC-AG-TTCAC-T-TC-AACATATT-ACGA-G-T-TG----TTGA--CAC-ATCC-AGCT-AAAGAAAG-CCGC-CTGCATT-AGTTCAAAACTG-TGT-ACA-ATGAAATAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTA-T--GTG-T-AT-TAATAAAATTACAAGTATA-TACACGTGTA--AATA--TTCTTT--------------AC---AA-----TA--GAATG-TTTGCATGCAT-TTCATAAAT-AAG-AGGTTATATANAATACAAT-TTTTG------TT-NCA-AACTATGAAA-C--AACATAATT----------ATT-T----------TATT-----TTAGATTTTT-A-ACA-TTA-TTAATTTTGTCTT-ACT---GTTAAAC-C-CCATACT-TGA-T-AT-C--CCAAATACA---TGATCATTTTTCTCC-AT--TGA-GCACATTTCGTGTATTATA-CCATTTGCTAA-A-AGC--TTTCACTCCNA--AAAATAGCGACCTGT-------CA----TA-T-T-TG--CCTTTTCCAAGTCTCCAATGGA-TA-GGTCT-TC-----TTAATACAGGTTTG-ACTGTATGT--G-AAAGTA-AATTTTAAGCCACGTTTCATGTAAATACCTGCAGAATCCACNTGATAGGAGGTA
Reference ( family-28 ) : TTTTGCAA-C-C-AT-TT-CGTGTA-T-T----TTCATGATATTTTTACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ACGCGATCCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-G-GTTAATCTG-A-G-AG-TTA-T-CG-CCCT--AAT---TNACTTTTCG--TTT-G----A----CACGCGCA-----GA-AAANTTG-GT-GGTG--ATTCTGAN--T-TGTT--G--A-ACTC--T-AAACTT--AGGA-TT---T--ACCC--AAA-T-TA-TC-AATT-AAC-GAACANN-T--AGTC----AGCGTGCAGG-G-TG--GTGGAGTCATTCCGATA---------AACCC-C-GA------GTT-GT-TTGT-------TTAACGAAATC--AT-GGA-T-CAT-GT-A-AT-G-A--AACAA-TGGCTT-TGT-TAT-CCA-A-GGT--G-TGAAATTTTCGA--CTG-A-CTTTGAGA-ATTG-TA-GG---T-ANAT--GGTGCG-AAACCTGGTGA-----CCCA-TT-ATANTC-CCTACA-TG-GAA-A-ATTA-AC-CTG-GCTG-T--GAC--GCAAAA--TTAG----ATCAAGA-CTGTGC-ATGGGAC-T---GATAAAAACT-TAGAAAACTGGATTATTTGCGA-CCTTTCCTAA-ACGA-ATNTC--GTA-GTTTCCA-----A-GAA-T-A--TTTTAA---AG-GTAGA----CATGAC--GACT-AG--AG-TTCAC-T-TC-AACATATT-A-GA-G-T-TG----TCGA--CAC-ATCC-AGCT-AAAGAAAG-CCGC-CTGCATT-AGTTCAAAACTG-TGT-ACA-ATGAAATAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTA-T--GTG-T-AT-TAATAAAATTACAAGTATA-TACACGTGTA--AATA--TTCTTT--------------AC---AA-----TA--GAATGNTTTGCATGCAT-TTCATAAATGAAG-ANGTTATATATAATACAATNTTTTG------TT-TNA-AACTATGAAA-C--AACATAATT----------ATT-T----------TATT-----TTAGATTTTT-A-ACA-TTA-TTAATTTTGTCTT-ACT---GTTAAAC-C-CCATACT-TG--T-AT-C--CCAAATACA---TGATCATTTTTCTCC-AT-GTGANGCACATTTCGTGTATTATA-CCATTCGCTGA-A-AGC--TTTCACTTCCA--AAAATAGCGACCTGT-------CA----TA-T-T-TG--CCTTTTCCAANTCTCCGATGGA-TAAGGTCTATC-----TTAATACAGGTTTG-ACTGTATNTTAAAAAAGTATAGTNNTAAACCACGCTNCATGTAAATACCTGCAGAATCCACATGATAGAAGGTA
gi|1 : TTTTGCAAAC-C-ACCTT-CATGTAGTAT----TTCGTCATATATT-ACCTT--ATTCAG------ACC-------AT-A-TAT--TTTTCAATTA--CA-CC----TCCC-TAC--T---TATCCA--TT-CGATCG-GC------TTTATCTG-A-GCAGATTA-T-CC-CCCT--AA-----CACTTTCAT--TTT-G----A-----ACCC-CA-----CA-TAATTT-----------AATCTATC--T-TGT---G--C-ATTC--T-AAATCA--GGGA-TT---T--ACCC--AAA-T-TA-TC-AATT-A---GAA-AAT-T--AGTC----AGC-TGCA-G-A-TGACGTGGAGTCA-TCCAATA---------AACCC-C-GC------ATT-GTGTTG--------TTAACCAAATC--AC-GTA-TCCAT-GT-A----------------GGCTT-TG--TAT-CCA-A-GCTTAG-TGAA--TTTCGA--CTG-A--TTTGAGACATTA-TA-GGTTAT-ACAT--AGTGTGAAAACCTCGTGA-----CCCA-TT-ATATTC-CCTACACTG-GAACA-AATA-AC-CT--GCTG-T--GAA--GC-AAA--TTAG----AT--AAA-CTGGAC-AT-GTACAT---GAT-AAAACT-TAGAAAACT-GATTATAT-C-A-CC-TTCCT-A-ACAA----TC--GTA-AGTTTCA-----A-GAA-A-A--TTTAAA---AG--------------------CT-A--------C---------ACATATTAA-GA-G-T-TG----TTTA--CAC-ATCCAAGCT-AAAGAAAG-CTGC-CTTCATT-AGTTCAAAACTG-TGT-ACT-TTG-AATAT---TGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-CCCAGCATTA-T---TG-T-AT-AAATGGAG----AAGCA----ACAC-T-TC--ATTACTTTCTTTCTATCATGAGAGGCACATTAA-----TA--AAA----TTACAAGTAT-AT-ACAATTGTAA-ATATTCTTTACAATAAAATGTTTTGCATGCATT-ACATAAATAAGAGG-TTAAATATAATTTTTGTTATCAATT-TTGAAACAACATATTATATTTTAGATGTTTAA-ACA-TTA-TTAATTTTGTCTT-ACT---G-TAAAA-C-CCATACT-TG----AT-CATCCAAATACA---TGATCA-TTTTCTCC-AT--TGA-GCCCATTTTGTGTATTATG-CCATTTGCTAA-A-CGC--TTTCACTCCAA--AAAATAG
gi|10 : tgaaatactatgacacagaatgcacattcagaactgctacagtcaaaactgccatagcgacccacctgtgtaacacccactcacatgttgaccataaacaaattcccccaacgtaccctataactattactaattatacgacactgtactgaccgcgacaacgaccatgatG-TGT-ACA-ATGAA-TAT---TGTGGTTTATT-TA-AGTGTCTT--TCAATG-AT-----TTG-AGTAAATT-TTCAGCATTATT--GTA-T-AT-T-ATAAgcaac
gi|10 : TT-TCTATCATGA-GAGGTGCT-GT-TA-TAAAATTACAAGTATA-TATATGTGTA--AATA--TTCTTT--------------AC---AATACGGTA--GAATGTTTTGCATGCAT-TTCATAAATAAggagaagcaacacttcattactttctttctatcatgagaggtgctgttataaaattacaagtatatatatgtgtaaatattctttacaatacggtagaatgttttgcatgcatttcataaataa
gi|11 : gtgtacaatgaatattgtggtttatttaagtgtctttcaatgatttgagtaaattttcagcattattgtatattataaggagaagcaacacttcattactttcACCTGT-------CA----TA-T-G-TGACCTTTTTTCAAGTCTCTGATGGA---AGGTCT--C-----TTAATACAGGTTTG-ACTGTATTTTAAAAAAGTA--GTGTTAAACCACATTTCATGTAAATACCTGCAGAATCCACATGATAGAAGGTA
gi|12 : tgtattaagagaccTTTTGCAA-C-C-AT-TT-CGTGTA-T-T----TTCATGATATTTT-ACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ACGCGATTCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-A-TTTAATCTG-A-G-AG-TTA-T-CGCCCCT--AA-----CAC-TTTCG--TTT-
gi|15 : gatTTTTACAA-C-C-AT-TT-CGTGTA-G-T----TTCATGAAAATTTT--CCT-TATTTAA-CAATTACC-------GC-A-TAT--TTTTGTATTA--CA-ACt
gi|16 : tgatgcaaccaacgaacaggatTTTTACCTT-TATTCAG-TG---ACC-------AT-A-TAT--TTTACGATTA--CA-ACGCGATCCC-TAC--T---T-TCCA--TTGCGATTGAGCGT-G-GTTAATCTG-A-G-AG-TTA-C-CACCCCT--AAatattcc
gi|17 : AAT-AAG-AGGTTATATA-AATACAAT-TCTTG------TT-ATC-AACTATGAAA-C--AACTTAATT----------ATT-A----------TATT-----TTAAATTTTTAA-ACA-TTA-TTAATTTTGTCTT-ATT---c
gi|18 : c-TT-ATATTC-CCTACAATG-GAA-A-ATTT-AC-CTG-GCTG-T--GAT--GC-AAA--TTAG----ATTAAGA-CTGTGC-ATGAGAC-T---GAT-AAAACT-TAGAAAACTGGATTATT
gi|19 : CTGT-------CA----TAGT-G-TG--CCTTTTTCAA-TCTCCAATGG---AAGGTCT--------CTAATACAGG--TGAACTGTATGT--------TATAATTATAAGCTAC
gi|2 : taagatgaccaTTTTGCAA-C-C-AT-TT--GTGTA-T-T----TTC--GATATTTTTACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGAT-A--CA-ACGCGATTCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-G-GTTAACCTG-A-G-AG-TTA-T-CG-CCCT--AAT---TCACTTTTCG--ATT-G----A----CATGCGCA-----GA-AAAGTTG-GT-GGTG--ATTCTGAT--T-TGTT--G--A-ACTC--TAAAACTT--AGGA-TT---T--ACCC--AAATT-TA-TC-AATT-AAT-GAACAGG-T--AGTC----AGCGTGCAGG-T-CG--GTGGAGTCATTCCGATA---------AATCC-C-GA------GTT--T-TTGT-------TTAACAAAATC--AT-GAA-T-CAT-GTCA-AT-G-A--AACAA-TGGCTTGTGT-TAT-CCG-A-GGT--G-TGAA--TTTCGA--CTG-A-CTTTGAGA-ATTG-TA-GG---T-AGATTAGGTGTG--AACCTGGTGA-----CCCA-TT-ATTATC-CATACA-TG-GAA-A-ATTA-AC-CTG-ACTG-T--GAC--GCAAAA--TTAG----AT--AGA-CTGTGC-ATAGGAC-T---GATAAAAACT-TAGAAAACTGGATTATTTGCGA-CCTTTCCTGA-ACGAGATATC--GTA-GTTTTCA-----A-GAA-T-A--TTTTAATATAGTGT-------CTTGACCGGACT-AGC-AG-TTCAC-T-TC-AACATATT-ACGATG-T-TG----TTGA--CACAATCC-AGCT-AAAGAAAGCCCGC-C-GCATT-AGTTCAAAACTG-TAT-A-A-ATG-AATAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTA-T--GTG-T-AT-TAATAAAATTACAAGTAAA-TACGC-TGTA--AATA--TTCTTT--------------AC---AA-----TA--GAATG-TTTGCATGCAT-TTCATAAATGAAG-ATGTTATATATAATATAATTTTTTG------TT-TAA-AACTATG-AA-C--AACATAA-T----------ATT-T----------TATT-----TTAGATTTTT-A-ACA-TTA-TTAATTTTGTCTT-ACT---GTTAAAC-C-CCATACT-TG--TAAT-C--CCAAGTACA---TGAT-A-TTTTCTCCAAT-ATGAAGCACATTTCGTGTATTATA-CCATTT-CTAA-A-AGC--ATTCACCTCCA--AAAATAGCGACCTGT-------CA----TA-T-TGTA--CCTTTTTCAAGTCTCCAATGGA-----GTC--TC-----TTAATACAGG-TTG-ACTGTATGT--GCAAAGTA-AATTTTAA-----GTTTTAT-T---TACCTG-----TTCACCTGA-AGGAGATAatt
gi|20 : GCT-AAAGAAAC-CCGC-CTGTATG-AGTTCAAAACTG-TGT-ACA-ATG-AGTAT---CATGG----TG-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-Tt
gi|21 : atACCTGT-------CA----C----T-T----CTTTTCCCATTCTCCAATAGA-TA--GTCTATTATTTATTAGTACAAATTTG-ACTGTA
gi|22 : tgtattaagagaccCCTGT-------CA----C----T-T----CTTTTCCAATTCTCCAATAGA-TA--GTCTATCATTTATTAGTACAAATTTG-ACT
gi|24 : tgtattaagagactgTTTTGCAA-C-C-AT-TT-CGTATA-T-T----TTCACGATA-TTTTACCTT-TATTCAG-CC---ACC-------A
gi|25 : atTTTTGCAA-C-T-GT-TT-CGTGTA-T-T----TTCATGATA
gi|3 : cacgaccaacgaccatgatTCTTGCAA-CTC-AT-TTGCGTGTA-T-T----TTCTTGATATT---ACCTTATAT-CAGTCG---ACC-------ATTA-TAT--TT--CGATT---CA-ACGCGATCC--TAC--TCCAT-TCGA--TTTCAA--GAACGT-G-GTTAATCTG-AAG-AG-TTA-TTCG-CCCT--ACCCTGTGACTGTTCGATCTT-G----AACCGCACGTGTA-----AT-AAGTTTG-ATCGGTGTAATTC-GAAAAT-TGTG--G--A-ATTC--T-AA--CT--AGGA-TT---TT-AGCC--AA--T-TAGTC-AAT--AAC-GAACAGG-T--AGTC----AGCGT----------------------------A---------AACCCAT-GT------GTTTGT-TTGT-------T--ACAAAATC--A--GGA-T--AT-GT-A-TT-GGA--AACAA-CGGCTT-TGT-ATT-CCA-A-GGT--G-TGGAATTTTCGAACTTG-A-GTTT-AGA-ATTGATAGGG---T-AGATACGGTGTA-AAATCTGGT-A-----CGCAGTT-ATATT--CCTAAA-TG-G---A-ATTA-AC-C-A-ACTGTT--GACT-GCCAAA--TAGG----ACTAAAG-CAGTGC-ATGGGA--T---GCTAAGTACTGTAGAAAACTGGA-TA-TTGCGA-CCTTTCTAAG-ACGAGATGTCCGGTACGTTTCTA-----ACGAA-TAA--TTTTAA---AGTGTAGA----CATGACAGGACTAAG--AGTTTCAC-T-TCAAACATATT-ACGA-G-TCTGT---TTGAAGCAC-ATCC-A-CT-AAAGAAAG-CTG--CTGCATT-AGTTCAAAACTG-TGTAACACAGGAAATCC--GTGTGGTTTATTCTA-A-TGTCTT--TTATTGCAT-----TTGAAATAAATTCTCCAGCATT
gi|3 : att-T-ATGTAATAAAATTACAAGTATAGTACACGTGTACGAATT--GTCTT---------------ACGA-AA-----TC--ATATGGTT-GCA-GCATGTTCATAAAT-AAG-AG----TGTAAAATATAA-CTTTTG------TTATCA-AATTATGAGA-G--AAC-CAAAT----------ATC-T----------T---------TAGATTTTT-ACACA-TTA-TAATTTTTGTCTTTCCT---GTTAAACGC-CTATACT-TGATC-AT-C--GCAAGTAAT---TGATCATTTTTCTCC-AT--TGACGGACATTTCGTGT-TTATA-ACATTTGCTGATACAGCTTTTTCACTCCAA--GAAAAGGCGACCTtatttttttttttttttttttttttttgtataaatggagaagcatactcttcaaatatctttctttcttatcactgagaggatatgtaataaaattacaagtatagtacacgtgtacgaattgtcttacgaaatcatatggttgcagcatgttcataaataagagtgtaaaatataacttttgttatcaaattatgagagaaccaaatatctttagatttttacacattataatttttgtctttcctgttaaacgcctatacttgatcatcgcaagtaattgatcatttttctccattgacggacatttcgtgtttataacatttgctgatacagctttttcactccaagaaaaggcgacct
gi|4 : atttcttgcaactcatttgcgtgtattttcttgatattaccttatatcagtcgaccattatatttcgattcaacgcgatcctactccattcgatttcaagaacgtggttaatctgaagagttattcgccctaccctgtgactgttcgatcttgaaccgcacgtgtaataagtttgatcggtgtaattcgaaaattgtggaattctaactaggattttagccaattagtcaataacgaacaggtagtcagcgtaaacccatgtgtttgtttgttacaaaatcaggatatgtattggaaacaacggctttgtattccaaggtgtggaattttcgaacttgagtttagaattgatagggtagatacggtgtaaaatctggtacgcagttatattcctaaatggaattaaccaactgttgactgccaaataggactaaagcagtgcatgggatgctaagtactgtagaaaactggatattgcgacctttctaagacgagatgtccggtacgtttctaacgaataattttaaagtgtagacatgacaggactaagagtttcacttcaaacatattacgagtctgtttgaagcacatccactaaagaaagctgctgcattagttcaaaactgtgtaacacaggaaatccgtgtggtttattctaatgtcttttattgcatttgaaataaattctccagcatttatttttttttttttttttttttttttgtataaatggagaagcatactcttcaaatatctttctttcttatcactgagaggaAAGTTATGT-GGTG--ATTCTGAT--TCTGTT--G--GCAC-C--T-ACACTTC-GGGA-TT---TTTACCC--AAAAT-TA-TC-AATT-AACTGAACATAAT--AGTC----A-CGTGCAGG-G-TC--GTGGAA-CAT-CCGATA---------AATCT-CAGAAGTTCGGCT-GT-TTGT-------TAACCAAAATCTTAT-GGACT-CAT-GT-A-AT-G-A--A-CAA-TG-CTT-TGTATAT-CTA-AAGGT--GGTGAA--TTCCGA--CTGTA-CTTTGAGA--TTG-TA-GGG--TGAAAT--AGGGCG-AAACCTGGTGATCACACCTA-TTGATATTCACCTACAATGTGAA-ATATTACACGCTGTGCTG-TTTGACAAGCAAAGATTTAGCATCATTAAGAACTGTACTATG--AC-TAGGGATAAAA--C-TAGAAA-CTGGAT-AT--GTGATCCTTCCCTAATACGA-ATTCC--GTAAGTTTCCATCATTA-GAAAT-AAATTTTAAGGAAG-GTAGAACCACATGACCTGAC--AGCTAG-TTCACATATC-AACATATT-G-GA-GAT-TGATGATCGA--CAC-CACC-AGCTTAACGAAAA-CCGTTCTGCATTTAGTTACAAACTGCTGT-ACAGATGAAATATTAGT-TGGTTTATT-TATA-TGTCTTAATCAA-G-ATGAATATTG-AATAAATT-TCCAGCATTA-T---TG-TCAT-TAA
gi|4 : T--------------AC---AA-----TACGGAACTGTTTGCA------------AAT--AGCAGGTTAT-TAAAATACGATATTTTT------TTATCA-AGCTATGAAAAC--AACACAATT----------ATTAT----------TATT-----TTAGATTTTA-A-ACAATTAATTAATTTTTTGTT-ACTCATGTTAAAC-CACCATACTGTGA-T-ATAC--TCAAATATACAATGAT-ATTTTTCTCC-ATTGTGA----CATTT-GT-TATTATAACCATTGCCT---A-AGC--TTTCACTTCCAATAAAATAGCGACCTTTAAGAGACCACTTCTA-TGC-TG--CCTTTTCAAAGGCTCC-ATGGACT--GGTCT-CC-----TTAATACAGGTTaaggagaagcaacacttcatactttcttttctatcaatgagaggctactggttataaagatacaacagtatcatacaatacggaactgtttgcaaatagcaggttattaaaatacgatatttttttatcaagctatgaaaacaacacaattattattattttagattttaaacaattaattaattttttgttactcatgttaaaccaccatactgtgatatactcaaatatacaatgatatttttctccattgtgacatttgttattataaccattgcctaagctttcacttccaataaaatagcgacctttaagagaccacttctatgctgccttttcaaaggctccatggactggtctccttaatacaggtt
gi|5 : aagttatgtggtgattctgattctgttggcacctacacttcgggatttttacccaaaattatcaattaactgaacataatagtcacgtgcagggtcgtggaacatccgataaatctcagaagttcggctgtttgttaaccaaaatcttatggactcatgtaatgaacaatgctttgtatatctaaaggtggtgaattccgactgtactttgagattgtagggtgaaatagggcgaaacctggtgatcacacctattgatattcacctacaatgtgaaatattacacgctgtgctgtttgacaagcaaagatttagcatcattaagaactgtactatgactagggataaaactagaaactggatatgtgatccttccctaatacgaattccgtaagtttccatcattagaaataaattttaaggaaggtagaaccacatgacctgacagctagttcacatatcaacatattggagattgatgatcgacaccaccagcttaacgaaaaccgttctgcatttagttacaaactgctgtacagatgaaatattagttggtttatttatatgtcttaatcaagatgaatattgaataaatttccagcattattgtcattaaaaggagaagcaacacttcatactttcttttctatcaatgagaggctactggttataaagatacaacagtatcaTTTTGCAA-A-C-AT-AT-TACG-A-T-TCGATTTCATGATATTATTAACTT-TATTCAG-TG---ACCCATTTCTAT-A-TGTAGTTTCCGATTA--CA---GGAGTCCTGTACGTT---C-TCCATGTTTCGATCGTGCGT-ATGTTAATCTGAA-G-AG-TTATT-CG-CCCTC-GA-----GA-TGTTCGTTTTT-G----A-----ATGCGCATGTATGA-AGTTTTG-GT-G--G--ATTCTGAT--T-TGCTTGG--A-ACTCGGT-AACTTC--AGGA-TTGTAT--ACCCCAAAA-TATA-TCAAATTAAAC-GAACATT-TGAAGTCGACAGGCGTGCAGGTG-TG--A-GGAAAAATTTCAATAATAATATATAA------GA------GTT-GT-TCGTTATATTGTTAATGAAACA--ATAGGA-TGCATAGT-AGATAG-ATTAACAATTGGCTT-AGT-TATACTAGA-GGT--G-TGAAATTTTCGA---TG-AGCATGGAGA-AATG-TA-GG---
gi|6 : atTTTTACAA-C-C-AT-TT-CATGTG-A-T----TTCATGATATATT-ACCTT-TATCTAA-CA---ACC-------AT-A-TAT--TTTTCGATTA--CC-ATACGATCCC-TAA--T---T-TTGA--TTTCGGTCGAGCTT-G-GCTAATTGG-A-G-AC-TTA-T-CG-TCCC--AA----AAACTTTT-G--TTT-AAACTA----CATGGGT------TA-TGGTTCG-TT-GGTG--ATTTTGTA--T-TGTT--GGCA-ACTG--T-AA---TGGAGGATTT---T--ATCC--TAC-C-TA-TC-AATT-ggt
gi|7 : ataaaataatgcctatagatgaacacttagaaatacagtaaatctgctatagcggcccactgtattaagcaactcactgtatgaccgtaaaattccccttcccccctggcgttaccctatatattgcattaaacaaccacctgtctgacgcgactaacggccatgatTAGTTTATT-TA-A-TGTCTT--T---------------------AATT-TCCAGCATTA-T--
gi|7 : -TAATAAAATTACAAGTATA-TACACGTGTA--AATA--TTCTTT--------------AC---AA-----TA--GAATTTTTTGCATGCAT-TTCATAAAT-AAG-AGGTTAGATATAAT------TTTTG------TT-ATC-AATTATGAAA-C--AACAT-ATT----------A--------------TATC-----TTAGATTTTTCA-ACA-TTA-TTAATTTTGTCTT-ACT---GTTAAA--C-CCATAAT-TG----AT----CCAAATACA---TTATCG-TTTTCTCC-AT--TGAGAC-CATTTtctataaaaagagaagcaactcttcattactttctttctatcatgagagttactgtaataaaattacaagtatatacacgtgtaaatattctttacaatagaattttttgcatgcatttcataaataagaggttagatataatttttgttatcaattatgaaacaacatattatatcttagatttttcaacattattaattttgtcttactgttaaacccataattgatccaaatacattatcgttttctccattgagaccattt
gi|8 : tagtttatttaatgtctttaatttccagcattattctataaaaagagaagcaactcttcattactttctttctatcatgagagttactgTTTGGCAA-C-CGATGTT-CGTG-A-T-T----TTC-TGAT--TTTTACCTT-TATTCAG-CGA--ACC-------AT-ACTAT--TTTCCGATTAAGCACACGCGATCCC-TAC--T---T-TATGATTTTCGATTGAGCGTGG-GTTAATCT----G-AG-TTA-T-CG--CCT--AAT---TGAC-TTTCG--TT
gi|9 : atagtacagtcaaaactgcaatatgcgacctactgtattaagcgactcactgtcacaggtgtgaccataaacattccccccaaagcgttaccctatatttacctgtattaaacgacactgtctgacgcgaccacgaccatgataG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ATGCGATCCC-TAT--T---T-TC-A--TTTCGATTGAGTGT-G-GTTAATCTG-A-G-AG-TTA-T-CG-CCCCTAAATA--TAACTTT-CG--TTTTG----A-----ACGCGCACGT--AATAAGTTTT-AT-GGTG--ATTCTGAT--T-TGTT--G--GCATTC--T-AAACTT--AGGA-TT---TT-ACCC--AAA-T-TA-TC-AAGT-AAG-GAACATG-T--AGTC----AGCGTGCAGG-GTTGT-GTGGAGTCA-TCTGATA---------AACCC-T-GAGTT---GTT-GT-TTGT-------TTAACAAAATC--TT-GG--T-CAT-GT-A-TT-G-A--AACAA-TGGCTT-TGT-TAT-CCgaaac
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TACAGTTTAGACTGCAATTGTGCACAAACCCACTGTATAAGCAAGTCACTGTTATATGTGACCATGAAAATTCCCTGCAAGGCATTACCCTATGTGTTGTACCTGTATTAAATGATCACCAGTCTGATGTGACCAAG
Unaligned ( gi|14 ): TGATAAACTAATGTAGATCTTATCAAGTACAGTCAAAACTGCCATAGCGACCCACTGTATTAAGCGACTCACTGTCATATTTTACCTGTTTTAAACAACCACCTGTCTGACGCGACCAA
Unaligned ( gi|23 ): ACATAAAAATAAGACAATGCAACATTTAAAGTACAGTCAAAACTGCCATAGCGACCCA
Unaligned ( gi|26 ): TACAGTCAAAACTGCCGTAGCAACCCACTGTATTAAGCGACTCACTG
Alignments
lowQualScore : 111 1111111 11 11 333333 11 333333333333333333333333333 1111 222222 11 111111 1111 4444444444444444444444444444444444444444444444444 222222222 11111 111 222222222 11 11 22 111 11 33333333333 1 22222 111 111 11 11 1 11 1111 11 111 1 1 111 1 111 1 11 2 2222222 222222 555555555555555555 222222 222222 1 111 3333 11 1 1 11 1 1 222 11111 22222 1 11 11 4444444444444444444 11111 1111 1 1 1111 1 111 2222222222222 1111 333333333333333333333333 222222222222 111 11 22222 111 222 111 11 1 11111 11 11 55555555555555555555555 222 444444444444444 44444 111 111 22222 22222 1
lowQualScore : 4 4 4 8 4 0 4 4 8888 4 2 8 4 4 000 1111111 4 4 55 55 4 4 66 777 4 2 22 555 4 4 4 4 4 4 8 00 555555 3 33 5 444444444444444444444444444 5 6666 0 77 888 5 999 8888 77 5 000000 1 5 5 5 77 22 5 5 5 5 77 333333 4444 0000000000000000000000000000000000000000000000000 6 6 444444444 22222 6 111 6 6 111111111 3 6 6 00 6 8 8 11 8 55 444 8 33 88 8 55555555555 3 0 2 55555 8 8 8 5 0 8 666 8 8 222 99 99 5 11 7777 11 8 8 66 8 444 0 0 8 0 0 777 2 0 3 111 5 4 33 0 6666666 888888 777777777777777777 3 55 3 222222 666666 8 0 111 1111 33 0 0 8 8 11 0 8 6 6 3 5 1 444 1 5 5 5 77 1 5 44444 5 5 00000 6 6 5 0 999 0 11 11 1111111111111111111 66666 99 7777 1 3 4444 5 0 2 0 9 2 333 0000000000000 2222 3 3 888888888888888888888888 1 555555555555 6 6 6 111 0 33 8 8 55555 444 444 444 8 00 6 2 3 0 8 55555 33 1 33 00000000000000000000000 6 1 888 999999999999999 7 8 88888 666 444 0 77777 66666 1 5
lowQualScore : . . . . . . . . .... . . . . . ... ....... . . .. .. . . .. ... . . .. ... . . . . . . . .. ...... . .. . ........................... . .... . .. ... . ... .... .. . ...... . . . . .. .. . . . . .. ...... .... ................................................. . . ......... ..... . ... . . ......... . . . .. . . . .. . .. ... . .. .. . ........... . . . ..... . . . . . . ... . . ... .. .. . .. .... .. . . .. . ... . . . . . ... . . . ... . . .. . ....... ...... .................. . .. . ...... ...... . . ... .... .. . . . . .. . . . . . . . ... . . . . .. . . ..... . . ..... . . . . ... . .. .. ................... ..... .. .... . . .... . . . . . . ... ............. .... . . ........................ . ............ . . . ... . .. . . ..... ... ... ... . .. . . . . . ..... .. . .. ....................... . . ... ............... . . ..... ... ... . ..... ..... . .
lowQualScore : 0 0 0 0 0 8 0 0 5555 9 0 1 0 0 000 8888888 0 0 55 55 0 4 11 888 4 9 22 222 4 4 4 4 4 4 9 66 444444 2 88 7 888888888888888888888888888 7 1111 7 99 444 7 333 0000 99 7 444444 7 7 7 7 99 99 7 7 7 7 77 000000 2222 3333333333333333333333333333333333333333333333333 7 7 333333333 88888 7 777 7 7 222222222 2 7 7 22 7 0 0 00 0 88 222 0 00 88 0 22222222222 2 0 5 00000 0 0 0 0 8 0 888 0 0 000 00 00 4 00 0000 22 0 0 44 0 000 6 8 0 8 6 888 5 0 2 888 0 5 88 0 0000000 000000 000000000000000000 5 00 2 222222 555555 8 0 000 2222 88 0 0 0 0 22 8 0 7 7 3 5 7 222 0 7 7 7 99 4 7 33333 7 0 88888 7 7 7 8 888 0 00 00 0000000000000000000 77777 22 5555 7 3 2222 7 1 5 0 8 2 555 7777777777777 7777 5 5 000000000000000000000000 8 777777777777 7 7 7 777 8 00 0 0 66666 000 444 000 0 66 5 5 2 0 8 00000 88 0 88 22222222222222222222222 7 7 222 888888888888888 3 0 77777 777 000 7 55555 55555 0 5
consensus : TTTTGCAA-C-C-AT-TT-CGTGTA-T-T----TTCATGATATTTTTACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ACGCGATCCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-G-GTTAATCTG-A-G-AG-TTA-T-CG-CCCT--AAT---TNACTTTTCG--TTT-G----A----CACGCGC----ACG----AAG-TTTGGT-GGTG--ATTCTGAT--T-TGTT--G--A-ACTC--T-AAACTT--AGGATT-T-T-ACCC--AAA-T-TA-TC-AATT-AAC-GAACATG-T--AGTC----AGCGTGCAGG-G-TG--GTGGAGTCATTCCGATA---------AACCC-C-GA------GTT-GT-TTGT-------TTAACAAAATC--AT-GGA-T-C-AT-GT-A-AT-G-A--AACAA-TGGCTT-TGT-TAT-CCA-A-GGT--G-TGAAATTTTCGA--CTG-A-CTTTGAGA-ATTG-TAGGGT---AGAT--GGTGTGAAA-CCTGGTGA-----CCCA-TT-ATATTC-CCTACAATG-GAA-A-ATTA-AC-CTG-GCTGTT-GAC--GCAAAA--TTAG----ATTAAGA-CTGTGC-ATGGGAC-T---GATAAAAACT-TAGAAAACTGGATTATTTGCGA-CCTTTCCTAA-ACGAGATNTC--GTA-GTTTCCA-----A-GAA-T-A--TTTTA--AN--AGTGTAGA----CATGACCGGACTAGC-AG-TTCAC-T-TC-AACATATTACGA-G-T-TG----TTGA--CAC-ATCC-AGCT-AAAGAAAG-CCGC-CTGCATT-AGTTCAAAACTG-TGT-ACA-ATGAAATAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTA-T--GTG-T-AT-TAATAAAATTACAAGTATA-TACACGTGTA--AATA--TTCTTT--------------AC---AA-----TA--GAA-TG-TTTGCATGCAT-TTCA----TAAAT-AAGAGGTTAT-TA-AATATAA-T-TTTTG------TTA-CA-AACTATGAAA-C--AACATAATT----------ATT-TT--------ATTTTAGATTT-------TT-A-AC-ATT-ATTAATTTTGTCTT-AC---TGTTAAAC-C-CCATACT-TGATCAT-CCCAAATAC---ATGATCATTTTTCTCC---ATTGA-GNACATTTCGTGTATTAT-ACCATTTGCTAA-A-AGC--TTTCACTCCNA--AAAATAGCGACCTGT-------CA----TAT-T-TG--CCTTTTCCAAGTCTCCAATGGATAGGTC------T-TC-----TTAATACAGGTTTG-ACTGTATGT---G-AAAGTA-AATTTTAAGCCACGTTTCATGTAAATACCTGCAGAATCCACNTGATAGGAGGTA
Reference ( family-28 ) : TTTTGCAA-C-C-AT-TT-CGTGTA-T-T----TTCATGATATTTTTACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ACGCGATCCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-G-GTTAATCTG-A-G-AG-TTA-T-CG-CCCT--AAT---TNACTTTTCG--TTT-G----A----CACGCGC----ANA----AAG-TTTGGT-GGTG--ATTCTGAT--T-TGTT--G--A-ACTC--T-AAACTT--AGGATT-T-T-ACCC--AAA-T-TA-TC-AATT-AAC-GAACANG-T--AGTC----AGCGTGCAGG-G-TG--GTGGAGTCATTCCGATA---------AACCC-C-GA------GTT-GT-TTGT-------TTAACAAAATC--AT-GGA-T-C-AT-GT-A-AT-G-A--AACAA-TGGCTT-TGT-TAT-CCA-A-GGT--G-TGAAATTTTCGA--CTG-A-CTTTGAGA-ATTG-TAGG-T---AGAT--GGTGTGAAA-CCTGGTGA-----CCCA-TT-ATATTC-CCTACAATG-GAA-A-ATTA-AC-CTG-GCTGT--GAC--GCAAAA--TTAG----ATTAAGA-CTGTGC-ATGGGAC-T---GATAAAAACT-TAGAAAACTGGATTATTTGCGA-CCTTTCCTAA-ACGAGATNTC--GTA-GTTTCCA-----A-GAA-T-A--TTTTA--AG--AGTGTAGA----CATGACCGGACTAGC-AG-TTCAC-T-TC-AACATATTACGA-G-T-TG----TTGA--CAC-ATCC-AGCT-AAAGAAAG-CCGC-CTGCATT-AGTTCAAAACTG-TGT-ACA-ATGAAATAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTA-T--GTG-T-AT-TAATAAAATTACAAGTATA-TACACGTGTA--AATA--TTCTTT--------------AC---AA-----TA--GAA-TG-TTTGCATGCAT-TTCA----TAAAT-AAGAGGTTATATANAATACAA-T-TTTTG------TTN-CA-AACTATGAAA-C--AACATAATT----------ATT-TT--------ATTTTAGATTT-------TT-A-AC-ATT-ATTAATTTTGTCTT-AC---TGTTAAAC-C-CCATACT-TGAT-AT-CCCAAATAC---ATGATCATTTTTCTCC---ATTGA-GCACATTTCGTGTATTAT-ACCATTTGCTAA-A-AGC--TTTCACTCCNA--AAAATAGCGACCTGT-------CA----TAT-T-TG--CCTTTTCCAAGTCTCCAATGGATAGGTC------T-TC-----TTAATACAGGTTTG-ACTGTATGT---G-AAAGTA-AATTTTAAGCCACGTTTCATGTAAATACCTGCAGAATCCACNTGATAGGAGGTA
gi|1 : TTTTGCAAAC-C-ACCTT-CATGTAGTAT----TTCGTCATATATT-ACCTT--ATTCAG------ACC-------AT-A-TAT--TTTTCAATTA--CA-CC----TCCC-TAC--T---TATCCA--TT-CGATCG-GC------TTTATCTG-A-GCAGATTA-T-CC-CCCT--AA-----CACTTTCAT--TTT-G----A-----ACCC-C----ACA----TAA-TTT----------AATCTATC--T-TGT---G--C-ATTC--T-AAA-TC--AGGGAT-T-T-ACCC--AAA-T-TA-TC-AATT-A---GAAAAT--T--AGTC----AGC-TGCAGA---TGACGTGGAGTCAT-CCAATA---------AACCC-C-GC------ATT-GTGTTGT-------T-AACCAAATC--AC-GTA-T-CCAT-GT-A----------------GGCTT-TGT--AT-CCA-A-GCTTAG-TGAA--TTTCGA--CTG-A--TTTGAGACATTA-TAGG-TTATACAT--AGTGTGAAAACCTCGTGA-----CCCA-TT-ATATTC-CCTACACTG-GAACA-AATA-AC-CT--GCTGT--GAA--GC-AAA--TTAG----AT--AAA-CTGGAC-AT-GTACAT---GAT-AAAACT-TAGAAAACT-GATTATAT-C-A-CC-TTCCT-A-ACAA----TC--GTA-AGTTTCA-----A-GAA---A--ATTTA--AA--AG--------------------CTA--------CAC---------ATATTAAGA-G-T-TG----TTTA--CAC-ATCCAAGCT-AAAGAAAG-CTGC-CTTCATT-AGTTCAAAACTG-TGT-ACT-TTG-AATAT---TGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-CCCAGCATTA-T---TG-T-AT-AAATGGAG----AAGCA----ACAC-T-TC--ATTACTTTCTTTCTATCATGAGAGGCACATTAA-----TA--AAA-----TTACAAGTATATACAATTGTAAAT-A-----TTCTTTACAATAAAA-TGTTTTGCATGCATTA-CATAAATAAGAGG-TTAAATATAATTTTTGTTATCAATT-TTGAAACAACATATTATATTTTAGATGTTT-AAAC-ATT-ATTAATTTTGTCTT-AC---TG-TAAAA-C-CCATACT-TGATCAT--CCAAATAC---ATGATCA-TTTTCTCC---ATTGA-GCCCATTTTGTGTATTAT-GCCATTTGCTAA-A-CGC--TTTCACTCCAA--AAAATAG
gi|10 : tgaaatactatgacacagaatgcacattcagaactgctacagtcaaaactgccatagcgacccacctgtgtaacacccactcacatgttgaccataaacaaattcccccaacgtaccctataactattactaattatacgacactgtactgaccgcgacaacgaccatgatG-TGT-ACA-ATGAA-TAT---TGTGGTTTATT-TA-AGTGTCTT--TCAATG-AT-----TTG-AGTAAATT-TTCAGCATTATT--GTA-T-AT-T-ATAAgcaac
gi|10 : TT-TCTATCATGA-GAGGTGCT-GT-TA-TAAAATTACAAGTATA-TATATGTGTA--AATA--TTCTTT--------------AC---AATACGGTA--GAA-TGTTTTGCATGCAT-TTCA----TAAAT-AAggagaagcaacacttcattactttctttctatcatgagaggtgctgttataaaattacaagtatatatatgtgtaaatattctttacaatacggtagaatgttttgcatgcatttcataaataa
gi|11 : gtgtacaatgaatattgtggtttatttaagtgtctttcaatgatttgagtaaattttcagcattattgtatattataaggagaagcaacacttcattactttcACCTGT-------CA----TAT-G-TGACCTTTTTTCAAGTCTCTGATGGA-AGGTC------T--C-----TTAATACAGGTTTG-ACTGTATTTTAAA-AAAGTA-G-TGTTAAACCACATTTCATGTAAATACCTGCAGAATCCACATGATAGAAGGTA
gi|12 : tgtattaagagaccTTTTGCAA-C-C-AT-TT-CGTGTA-T-T----TTCATGATATTTT-ACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ACGCGATTCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-A-TTTAATCTG-A-G-AG-TTA-T-CGCCCCT--AA-----CAC-TTTCG--TTT-
gi|15 : gatTTTTACAA-C-C-AT-TT-CGTGTA-G-T----TTCATGAAAATTTT--CCT-TATTTAA-CAATTACC-------GC-A-TAT--TTTTGTATTA--CA-ACt
gi|16 : tgatgcaaccaacgaacaggatTTTTACCTT-TATTCAG-TG---ACC-------AT-A-TAT--TTTACGATTA--CA-ACGCGATCCC-TAC--T---T-TCCA--TTGCGATTGAGCGT-G-GTTAATCTG-A-G-AG-TTA-C-CACCCCT--AAatattcc
gi|17 : AAT-AAGAGGTTATATA-AATACAA-T-TCTTG------TTA-TC-AACTATGAAA-C--AACTTAATT----------ATT-AT--------ATTTTAAATTT-------TTAA-AC-ATT-ATTAATTTTGTCTT-AT---Tc
gi|18 : c-TT-ATATTC-CCTACAATG-GAA-A-ATTT-AC-CTG-GCTGT--GAT--GC-AAA--TTAG----ATTAAGA-CTGTGC-ATGAGAC-T---GAT-AAAACT-TAGAAAACTGGATTATT
gi|19 : CTGT-------CA----TAG-TGTG--CCTTTTTCAA-TCTCCAATGGA-AGGTC------T--------CTAATACAGG--TGAACTGTATGT---------TATAATTATAAGCTACATT
gi|2 : taagatgaccaTTTTGCAA-C-C-AT-TT--GTGTA-T-T----TTC--GATATTTTTACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGAT-A--CA-ACGCGATTCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-G-GTTAACCTG-A-G-AG-TTA-T-CG-CCCT--AAT---TCACTTTTCG--ATT-G----A----CATGCGC----AGA----AAA-GTTGGT-GGTG--ATTCTGAT--T-TGTT--G--A-ACTC--TAAAACTT--AGGA-T-T-T-ACCC--AAATT-TA-TC-AATT-AAT-GAACAGG-T--AGTC----AGCGTGCAGG-T-CG--GTGGAGTCATTCCGATA---------AATCC-C-GA------GTT--T-TTGT-------TTAACAAAATC--AT-GAA-T-C-AT-GTCA-AT-G-A--AACAA-TGGCTTGTGT-TAT-CCG-A-GGT--G-TGAA--TTTCGA--CTG-A-CTTTGAGA-ATTG-TAGG-T---AGATTAGGTGTG-AA-CCTGGTGA-----CCCA-TT-ATTATC-CATAC-ATG-GAA-A-ATTA-AC-CTG-ACTGT--GAC--GCAAAA--TTAG----AT--AGA-CTGTGC-ATAGGAC-T---GATAAAAACT-TAGAAAACTGGATTATTTGCGA-CCTTTCCTGA-ACGAGATATC--GTA-GTTTTCA-----A-GAA-T-A--TTTTAATAT--AGTGT-------CTTGACCGGACTAGC-AG-TTCAC-T-TC-AACATATTACGATG-T-TG----TTGA--CACAATCC-AGCT-AAAGAAAGCCCGC-C-GCATT-AGTTCAAAACTG-TAT-A-A-ATG-AATAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTA-T--GTG-T-AT-TAATAAAATTACAAGTAAA-TACGC-TGTA--AATA--TTCTTT--------------AC---AA-----TA--GAA-TG-TTTGCATGCAT-TTCA----TAAATGAAGATGTTATATATAATATAATT-TTTTG------TTT-AA-AACTATG-AA-C--AACATAA-T----------ATT-TT--------ATTTTAGATTT-------TT-A-AC-ATT-ATTAATTTTGTCTT-AC---TGTTAAAC-C-CCATACT-TGTA-AT-CCCAAGTAC---ATGAT-A-TTTTCTCCAATATGAA-GCACATTTCGTGTATTAT-ACCATTT-CTAA-A-AGC--ATTCACCTCCA--AAAATAGCGACCTGT-------CA----TAT-TGTA--CCTTTTTCAAGTCTCCAATGGA---GTC--------TC-----TTAATACAGG-TTG-ACTGTATGT---GCAAAGTA-AATTTTAA-----GTTTTAT-T---TACCTG-----TTCACCTGA-AGGAGATA
gi|20 : GCT-AAAGAAAC-CCGC-CTGTATG-AGTTCAAAACTG-TGT-ACA-ATG-AGTAT---CATGG----TG-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-Tt
gi|21 : atACCTGT-------CA----C---T-T----CTTTTCCCATTCTCCAATAGATA-GTCTATTATT-TA-----TTAGTACAAATTTG-ACTGTA
gi|22 : tgtattaagagaccCCTGT-------CA----C---T-T----CTTTTCCAATTCTCCAATAGATA-GTC------TATCATTTATTAGTACAAATTTG-ACT
gi|24 : tgtattaagagactgTTTTGCAA-C-C-AT-TT-CGTATA-T-T----TTCACGATA-TTTTACCTT-TATTCAG-CC---ACC-------A
gi|25 : atTTTTGCAA-C-T-GT-TT-CGTGTA-T-T----TTCATGATA
gi|3 : cacgaccaacgaccatgatTCTTGCAA-CTC-AT-TTGCGTGTA-T-T----TTCTTGATATT---ACCTTATAT-CAGTCG---ACC-------ATTA-TAT--TT--CGATT---CA-ACGCGATCC--TAC--TCCAT-TCGA--TTTCAA--GAACGT-G-GTTAATCTG-AAG-AG-TTA-TTCG-CCCT--ACCCTGTGACTGTTCGATCTT-G----AACCGCACGTGT----AAT----AAG-TTTGATCGGTGTAATTC-GAAAAT-TGTG--G--A-ATTC--T-AA--CT--AGGATT-T-T-AGCC--AA--T-TAGTC-AAT--AAC-GAACAGG-T--AGTC----AGCGT----------------------------A---------AACCCAT-GT------GTTTGT-TTGT-------T--ACAAAATC--A--GGA-T---AT-GT-A-TT-GGA--AACAA-CGGCTT-TGT-ATT-CCA-A-GGT--G-TGGAATTTTCGAACTTG-A-GTTT-AGA-ATTGATAGGGT---AGATACGGTGTAAAA-TCTGGT-A-----CGCAGTT-ATATTC-C-TA-AATG-GAA----TTA-AC-C-A-ACTGTT-GACT-GCCAAA--TAGG----ACTAAAG-CAGTGC-ATGGGA--T---GCTAAGTACTGTAGAAAACTGGAT-ATT-GCGA-CCTTTCTAAG-ACGAGATGTCCGGTACGTTTCTA-----ACGAA-TAA--TTTTA--A---AGTGTAGA----CATGACAGGACTAAG-AGTTTCAC-T-TCAAACATATTACGA-G-TCTGT---TTGAAGCAC-ATCC-A-CT-AAAGAAAG-CTG--CTGCATT-AGTTCAAAACTG-TGTAACACAGGAAATCC--GTGTGGTTTATTCTA-A-TGTCTT--TTATTGCAT-----TTGAAATAAATTCTCCAGCATT
gi|3 : att-T-ATGTAATAAAATTACAAGTATAGTACACGTGTACGAATT--GTCTT---------------ACGA-AA-----TC--ATA-TG-GTTGCA-GCATGTTCA----TAAAT-AAGAG----TGTAAAATATAA-C-TTTTG------TTATCA-AATTATGAGA-G--AAC-CAAAT----------ATC-TT------------TAGATTT-------TT-ACAC-ATT-ATAATTTTTGTCTTTCC---TGTTAAACGC-CTATACT-TGATCAT-CGCAAGTAA---TTGATCATTTTTCTCC---ATTGACGGACATTTCGTGT-TTAT-AACATTTGCTGATACAGCTTTTTCACTCCAA--GAAAAGGCGACCTtatttttttttttttttttttttttttgtataaatggagaagcatactcttcaaatatctttctttcttatcactgagaggatatgtaataaaattacaagtatagtacacgtgtacgaattgtcttacgaaatcatatggttgcagcatgttcataaataagagtgtaaaatataacttttgttatcaaattatgagagaaccaaatatctttagatttttacacattataatttttgtctttcctgttaaacgcctatacttgatcatcgcaagtaattgatcatttttctccattgacggacatttcgtgtttataacatttgctgatacagctttttcactccaagaaaaggcgacct
gi|4 : atttcttgcaactcatttgcgtgtattttcttgatattaccttatatcagtcgaccattatatttcgattcaacgcgatcctactccattcgatttcaagaacgtggttaatctgaagagttattcgccctaccctgtgactgttcgatcttgaaccgcacgtgtaataagtttgatcggtgtaattcgaaaattgtggaattctaactaggattttagccaattagtcaataacgaacaggtagtcagcgtaaacccatgtgtttgtttgttacaaaatcaggatatgtattggaaacaacggctttgtattccaaggtgtggaattttcgaacttgagtttagaattgatagggtagatacggtgtaaaatctggtacgcagttatattcctaaatggaattaaccaactgttgactgccaaataggactaaagcagtgcatgggatgctaagtactgtagaaaactggatattgcgacctttctaagacgagatgtccggtacgtttctaacgaataattttaaagtgtagacatgacaggactaagagtttcacttcaaacatattacgagtctgtttgaagcacatccactaaagaaagctgctgcattagttcaaaactgtgtaacacaggaaatccgtgtggtttattctaatgtcttttattgcatttgaaataaattctccagcatttatttttttttttttttttttttttttgtataaatggagaagcatactcttcaaatatctttctttcttatcactgagagga----AAG-TTATGT-GGTG--ATTCTGAT--TCTGTT--G--GCAC-C--T-ACACTTC-GGGATT-T-TTACCC--AAAAT-TA-TC-AATT-AACTGAACATAAT--AGTC----A-CGTGCAGG-G-TC--GTGGAA-CAT-CCGATA---------AATCT-CAGAAGTTCGGCT-GT-TTGT-------TAACCAAAATCTTAT-GGACT-C-AT-GT-A-AT-G-A--A-CAA-TG-CTT-TGTATAT-CTA-AAGGT--GGTGAA--TTCCGA--CTGTA-CTTTGAGA--TTG-TAGGGTG--AAAT--AGGGCGAAA-CCTGGTGATCACACCTA-TTGATATTCACCTACAATGTGAA-ATATTACACGCTGTGCTGTTTGACAAGCAAAGATTTAGCATCATTAAGAACTGTACTATG--AC-TAGGGATAAAA--C-TAGAAA-CTGGAT-AT--GTGATCCTTCCCTAATACGA-ATTCC--GTAAGTTTCCATCATTA-GAAAT-AAATTTTA--AGGAAG-GTAGAACCACATGACCTGAC-AGCTAG-TTCACATATC-AACATATTG-GA-GAT-TGATGATCGA--CAC-CACC-AGCTTAACGAAAA-CCGTTCTGCATTTAGTTACAAACTGCTGT-ACAGATGAAATATTAGT-TGGTTTATT-TATA-TGTCTTAATCAA-G-ATGAATATTG-AATAAATT-TCCAGCATTA-T---TG-TCAT-TAA
gi|4 : T--------------AC---AA-----TACGGAACTG-TTTGCA----------------AAT-AGCAGGTTAT-TAAAATACGA-TATTTTT------TTATCA-AGCTATGAAAAC--AACACAATT----------ATTATT--------ATTTTAGATTT-------TA-A-ACAATTAATTAATTTTTTGTT-ACTCATGTTAAAC-CACCATACTGTGAT-ATACTCAAATATACAATGAT-ATTTTTCTCC---ATTGT-G-ACATTT-GT-TATTATAACCATTGCCT---A-AGC--TTTCACTTCCAATAAAATAGCGACCTTTAAGAGACCACTTCTATGC-TG--CCTTTTCAAAGGCTCC-ATGGACTGGTC------T-CC-----TTAATACAGGTTaaggagaagcaacacttcatactttcttttctatcaatgagaggctactggttataaagatacaacagtatcatacaatacggaactgtttgcaaatagcaggttattaaaatacgatatttttttatcaagctatgaaaacaacacaattattattattttagattttaaacaattaattaattttttgttactcatgttaaaccaccatactgtgatatactcaaatatacaatgatatttttctccattgtgacatttgttattataaccattgcctaagctttcacttccaataaaatagcgacctttaagagaccacttctatgctgccttttcaaaggctccatggactggtctccttaatacaggtt
gi|5 : aagttatgtggtgattctgattctgttggcacctacacttcgggatttttacccaaaattatcaattaactgaacataatagtcacgtgcagggtcgtggaacatccgataaatctcagaagttcggctgtttgttaaccaaaatcttatggactcatgtaatgaacaatgctttgtatatctaaaggtggtgaattccgactgtactttgagattgtagggtgaaatagggcgaaacctggtgatcacacctattgatattcacctacaatgtgaaatattacacgctgtgctgtttgacaagcaaagatttagcatcattaagaactgtactatgactagggataaaactagaaactggatatgtgatccttccctaatacgaattccgtaagtttccatcattagaaataaattttaaggaaggtagaaccacatgacctgacagctagttcacatatcaacatattggagattgatgatcgacaccaccagcttaacgaaaaccgttctgcatttagttacaaactgctgtacagatgaaatattagttggtttatttatatgtcttaatcaagatgaatattgaataaatttccagcattattgtcattaaaaggagaagcaacacttcatactttcttttctatcaatgagaggctactggttataaagatacaacagtatcaTTTTGCAA-A-C-AT-AT-TACG-A-T-TCGATTTCATGATATTATTAACTT-TATTCAG-TG---ACCCATTTCTAT-A-TGTAGTTTCCGATTA--CA---GGAGTCCTGTACGTT---C-TCCATGTTTCGATCGTGCGT-ATGTTAATCTGAA-G-AG-TTATT-CG-CCCTC-GA-----GA-TGTTCGTTTTT-G----A-----ATGCGCATGTATG----AAGTTTTGGT-G--G--ATTCTGAT--T-TGCTTGG--A-ACTCGGT-AACTTC--AGGATTGTAT-ACCCCAAAA-TATA-TCAAATTAAAC-GAACATT-TGAAGTCGACAGGCGTGCAGGTG-TG--A-GGAAAAATTTCAATAATAATATATAA------GA------GTT-GT-TCGTTATATTGTTAATGAAACA--ATAGGA-TGC-ATAGT-AGATAG-ATTAACAATTGGCTT-AGT-TATACTAGA-GGT--G-TGAAATTTTCGA---TG-AGCATGGAGA-AATG-TAGG-
gi|6 : atTTTTACAA-C-C-AT-TT-CATGTG-A-T----TTCATGATATATT-ACCTT-TATCTAA-CA---ACC-------AT-A-TAT--TTTTCGATTA--CC-ATACGATCCC-TAA--T---T-TTGA--TTTCGGTCGAGCTT-G-GCTAATTGG-A-G-AC-TTA-T-CG-TCCC--AA----AAACTTTT-G--TTT-AAACTA----CATGGGT-----TA----TGG-TTCGTT-GGTG--ATTTTGTA--T-TGTT--GGCA-ACTG--T-AA---TGGAGGATT-T-T-ATCC--TAC-C-TA-TC-AATT-ggt
gi|7 : ataaaataatgcctatagatgaacacttagaaatacagtaaatctgctatagcggcccactgtattaagcaactcactgtatgaccgtaaaattccccttcccccctggcgttaccctatatattgcattaaacaaccacctgtctgacgcgactaacggccatgatTAGTTTATT-TA-A-TGTCTT--T---------------------AATT-TCCAGCATTA-T--
gi|7 : -TAATAAAATTACAAGTATA-TACACGTGTA--AATA--TTCTTT--------------AC---AA-----TA--GAATTT-TTTGCATGCAT-TTCA----TAAAT-AAGAGGTTA-----GATATAA-T-TTTTG------TTA-TC-AATTATGAAA-C--AACAT-ATT----------A----T--------ATCTTAGATTT-------TTCA-AC-ATT-ATTAATTTTGTCTT-AC---TGTTAAA--C-CCATAAT-TGAT-----CCAAATAC---ATTATCG-TTTTCTCC---ATTGA-GACCATTTtctataaaaagagaagcaactcttcattactttctttctatcatgagagttactgtaataaaattacaagtatatacacgtgtaaatattctttacaatagaattttttgcatgcatttcataaataagaggttagatataatttttgttatcaattatgaaacaacatattatatcttagatttttcaacattattaattttgtcttactgttaaacccataattgatccaaatacattatcgttttctccattgagaccattt
gi|8 : tagtttatttaatgtctttaatttccagcattattctataaaaagagaagcaactcttcattactttctttctatcatgagagttactgTTTGGCAA-C-CGATGTT-CGTG-A-T-T----TTC-TGAT--TTTTACCTT-TATTCAG-CGA--ACC-------AT-ACTAT--TTTCCGATTAAGCACACGCGATCCC-TAC--T---T-TATGATTTTCGATTGAGCGTGG-GTTAATCT----G-AG-TTA-T-CG--CCT--AAT---TGAC-TTTCG--TT
gi|9 : atagtacagtcaaaactgcaatatgcgacctactgtattaagcgactcactgtcacaggtgtgaccataaacattccccccaaagcgttaccctatatttacctgtattaaacgacactgtctgacgcgaccacgaccatgataG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ATGCGATCCC-TAT--T---T-TC-A--TTTCGATTGAGTGT-G-GTTAATCTG-A-G-AG-TTA-T-CG-CCCCTAAATA--TAACTTT-CG--TTTTG----A-----ACGCGC----ACGTAATAAG-TTTTAT-GGTG--ATTCTGAT--T-TGTT--G--GCATTC--T-AAACTT--AGGATT-T-T-ACCC--AAA-T-TA-TC-AAGT-AAG-GAACATG-T--AGTC----AGCGTGCAGG-GTTGT-GTGGAGTCA-TCTGATA---------AACCC-T-GAGTT---GTT-GT-TTGT-------TTAACAAAATC--TT-GG--T-C-AT-GT-A-TT-G-A--AACAA-TGGCTT-TGT-TAT-CCgaaac
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TACAGTTTAGACTGCAATTGTGCACAAACCCACTGTATAAGCAAGTCACTGTTATATGTGACCATGAAAATTCCCTGCAAGGCATTACCCTATGTGTTGTACCTGTATTAAATGATCACCAGTCTGATGTGACCAAG
Unaligned ( gi|14 ): TGATAAACTAATGTAGATCTTATCAAGTACAGTCAAAACTGCCATAGCGACCCACTGTATTAAGCGACTCACTGTCATATTTTACCTGTTTTAAACAACCACCTGTCTGACGCGACCAA
Unaligned ( gi|23 ): ACATAAAAATAAGACAATGCAACATTTAAAGTACAGTCAAAACTGCCATAGCGACCCA
Unaligned ( gi|26 ): TACAGTCAAAACTGCCGTAGCAACCCACTGTATTAAGCGACTCACTG
Alignments
lowQualScore : 111 1111111 11 11 333333 11 444444444444444444444444444 1111 222222 11 11111 1111 4444444444444444444444444444444444444444444444444 222222222 11111 111 222222222 11 11 22 111 11 11 1 22 1 22222 111 111 111 11 111 1111 11 111 1 1 111 1 11 2 2222222 222222 555555555555555555 222222 222222 1 111 3333 11 1 1 11 1 1 222 11111 22222 1 11 11 4444444444444444444 11111 1111 1 1 1111 2 1 111 111111 1111 1111 222222 1111 22222222222222222222 2222222 11 11111 111 222 111 1 11111 11 11 55555555555555555555555 222 444444444444444 44444 111 111 22222 22222 1
lowQualScore : 4 4 4 8 4 0 4 4 8888 4 2 8 4 4 000 1111111 4 4 55 55 4 4 66 777 4 2 22 555 4 4 4 4 4 4 8 00 555555 3 33 5 222222222222222222222222222 5 6666 0 77 888 5 999 8888 77 5 000000 1 5 5 5 77 22 5 5 5 5 77 22222 4444 0000000000000000000000000000000000000000000000000 6 6 444444444 22222 6 111 6 6 111111111 3 6 6 00 6 8 8 11 8 55 444 8 33 88 8 11 0 0 77 3 0 2 55555 8 8 8 5 0 8 666 8 8 222 999 99 5 444 7777 11 8 8 66 8 444 0 0 8 0 11 66 2 2 0 3 111 5 4 33 0 6666666 888888 555555555555555555 3 55 3 222222 666666 8 0 111 1111 33 0 0 8 8 11 0 8 6 6 3 5 1 444 1 5 5 5 77 1 5 44444 5 5 00000 6 6 5 0 999 0 11 11 1111111111111111111 66666 99 7777 1 3 4444 5 0 55 1 0 3 6 0 333 999999 8888 2222 3 3 6 1 555555 6 6 6 6 4444 99999999999999999999 6666666 33 8 8 0 99999 444 444 444 8 99 6 2 3 0 8 55555 33 1 33 00000000000000000000000 6 1 888 999999999999999 7 8 88888 666 444 0 77777 66666 1 5
lowQualScore : . . . . . . . . .... . . . . . ... ....... . . .. .. . . .. ... . . .. ... . . . . . . . .. ...... . .. . ........................... . .... . .. ... . ... .... .. . ...... . . . . .. .. . . . . .. ..... .... ................................................. . . ......... ..... . ... . . ......... . . . .. . . . .. . .. ... . .. .. . .. . . .. . . . ..... . . . . . . ... . . ... ... .. . ... .... .. . . .. . ... . . . . .. .. . . . . ... . . .. . ....... ...... .................. . .. . ...... ...... . . ... .... .. . . . . .. . . . . . . . ... . . . . .. . . ..... . . ..... . . . . ... . .. .. ................... ..... .. .... . . .... . . .. . . . . . ... ...... .... .... . . . . ...... . . . . .... .................... ....... .. . . . ..... ... ... ... . .. . . . . . ..... .. . .. ....................... . . ... ............... . . ..... ... ... . ..... ..... . .
lowQualScore : 0 0 0 0 0 8 0 0 5555 9 0 1 0 0 000 8888888 0 0 55 55 0 4 11 888 4 9 22 222 4 4 4 4 4 4 9 66 444444 2 88 7 111111111111111111111111111 7 1111 7 99 444 7 333 0000 99 7 444444 7 7 7 7 99 99 7 7 7 7 77 00000 2222 3333333333333333333333333333333333333333333333333 7 7 333333333 88888 7 777 7 7 222222222 2 7 7 22 7 0 0 00 0 88 222 0 00 88 0 00 0 2 55 2 0 5 00000 0 0 0 0 8 0 888 0 0 000 444 00 6 888 0000 22 0 0 44 0 000 6 8 0 8 66 88 5 5 0 2 888 0 5 88 0 0000000 000000 000000000000000000 5 00 2 222222 555555 8 0 000 2222 88 0 0 0 0 22 8 0 7 7 3 5 7 222 0 7 7 7 99 4 7 33333 7 0 88888 7 7 7 8 888 0 00 00 0000000000000000000 77777 22 5555 7 3 2222 7 1 77 5 0 3 7 3 555 222222 5555 7777 5 5 7 7 333333 7 7 7 7 2222 00000000000000000000 0000000 00 0 0 8 66666 000 444 000 0 44 5 5 2 0 8 00000 88 0 88 22222222222222222222222 7 7 222 888888888888888 3 0 77777 777 000 7 55555 55555 0 5
consensus : TTTTGCAA-C-C-AT-TT-CGTGTA-T-T----TTCATGATATTTTTACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ACGCGATCCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-G-GTTAATCTG-A-G-AG-TTA-T-CG-CCCT--AAT---TNACTTTTCG--TTT-G----A-ACGCG-C----ACG------AAG-TTTGGT-GGTG--ATTCTGAT--T-TGTT--G--A-ACTC--T-AAACTT--AGGATT-T-T-ACCC--AAA-T-TA-TC-AATT-AAC-GAACATG-T--AGTC----AGCGTGCAGG-G-TG--GTGGAGTCATTCCGATA---------AACCC-C-GA------GTT-GT-TTGT-------TTAACAAAATC--AT-GGA-T-C-AT-GT-A-AT-G-A--AACAA-TGGCTT-TGT-TAT-CCA-A-GGT--G-TGAAATTTTCGA--CTG-A-CTTTGAGA-ATTG-TAGG--GT-AGAT--GGTGTGAAA-CCTGGTGA-----CCCA-TT-ATATTC-CCTACAATG-GAA-A-ATTA-AC-CTG-GCTGTT-GAC--GCAAAA--TTAG----ATTAAGA-CTGTGC-ATGGGAC-T---GATAAAAACT-TAGAAAACTGGATTATTTGCGA-CCTTTCCTAA-ACGAGATNTC--GTA-GTTTCCA-----A-GAA-T-A--TTTTA--AN--AGTGTAGA----CATGACCGGACTAGC-AG-TTCAC-T-TC-AACATATTACGA-G-T-TG----TTGA--CAC-ATCC-AGCT-AAAGAAAG-CCGC-CTGCATT-AGTTCAAAACTG-TGT-ACA-ATGAAATAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTA-T--GTG-T-AT-TAATAAAATTACAAGTATA-TACACGTGTA--AATA--TTCTTT--------------AC---AA-----TA--GAA-TG-TTTGCATGCAT-TTCA----TAAAT-AAGAGGTTAT-TA-AA-TATAA-T-TTTTG------TTA-CA-AACTATGAAA-C--AACATAATTATT-TTATTTTAGATTTT----T-A-AC-ATT-ATTA-ATTT----TGTC------TT-A------C---TGT-------TAAAC-C-CCATACT-TGATCAT-CCCAAATAC---ATGATCATTTTTCTCC---ATTGA-GNACATTTCGTGTATTAT-ACCATTTGCTAA-A-AGC--TTTCACTCCNA--AAAATAGCGACCTGT-------CA----TAT-T-TG--CCTTTTCCAAGTCTCCAATGGATAGGTC------T-TC-----TTAATACAGGTTTG-ACTGTATGT---G-AAAGTA-AATTTTAAGCCACGTTTCATGTAAATACCTGCAGAATCCACNTGATAGGAGGTA
Reference ( family-28 ) : TTTTGCAA-C-C-AT-TT-CGTGTA-T-T----TTCATGATATTTTTACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ACGCGATCCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-G-GTTAATCTG-A-G-AG-TTA-T-CG-CCCT--AAT---TNACTTTTCG--TTT-G----ACACGCG-C----ACG------AAG-TTTGGT-GGTG--ATTCTGAT--T-TGTT--G--A-ACTC--T-AAACTT--AGGATT-T-T-ACCC--AAA-T-TA-TC-AATT-AAC-GAACATG-T--AGTC----AGCGTGCAGG-G-TG--GTGGAGTCATTCCGATA---------AACCC-C-GA------GTT-GT-TTGT-------TTAACAAAATC--AT-GGA-T-C-AT-GT-A-AT-G-A--AACAA-TGGCTT-TGT-TAT-CCA-A-GGT--G-TGAAATTTTCGA--CTG-A-CTTTGAGA-ATTG-TAGG--GT-AGAT--GGTGTGAAA-CCTGGTGA-----CCCA-TT-ATATTC-CCTACAATG-GAA-A-ATTA-AC-CTG-GCTGTT-GAC--GCAAAA--TTAG----ATTAAGA-CTGTGC-ATGGGAC-T---GATAAAAACT-TAGAAAACTGGATTATTTGCGA-CCTTTCCTAA-ACGAGATNTC--GTA-GTTTCCA-----A-GAA-T-A--TTTTA--AN--AGTGTAGA----CATGACCGGACTAGC-AG-TTCAC-T-TC-AACATATTACGA-G-T-TG----TTGA--CAC-ATCC-AGCT-AAAGAAAG-CCGC-CTGCATT-AGTTCAAAACTG-TGT-ACA-ATGAAATAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTA-T--GTG-T-AT-TAATAAAATTACAAGTATA-TACACGTGTA--AATA--TTCTTT--------------AC---AA-----TA--GAA-TG-TTTGCATGCAT-TTCA----TAAAT-AAGAGGTTAT-TA-AA-TATAA-T-TTTTG------TTA-CA-AACTATGAAA-C--AACATAATTATT-TTATTTTAGATTTT----T-A-AC-ATT-ATTA-ATTT----TGTC------TT-A------C---TGT-------TAAAC-C-CCATACT-TGATCAT-CCCAAATAC---ATGATCATTTTTCTCC---ATTGA-GNACATTTCGTGTATTAT-ACCATTTGCTAA-A-AGC--TTTCACTCCNA--AAAATAGCGACCTGT-------CA----TAT-T-TG--CCTTTTCCAAGTCTCCAATGGATAGGTC------T-TC-----TTAATACAGGTTTG-ACTGTATGT---G-AAAGTA-AATTTTAAGCCACGTTTCATGTAAATACCTGCAGAATCCACNTGATAGGAGGTA
gi|1 : TTTTGCAAAC-C-ACCTT-CATGTAGTAT----TTCGTCATATATT-ACCTT--ATTCAG------ACC-------AT-A-TAT--TTTTCAATTA--CA-CC----TCCC-TAC--T---TATCCA--TT-CGATCG-GC------TTTATCTG-A-GCAGATTA-T-CC-CCCT--AA-----CACTTTCAT--TTT-G----A-ACCC--C----ACA------TAA-TTT----------AATCTATC--T-TGT---G--C-ATTC--T-AAA-TC--AGGGAT-T-T-ACCC--AAA-T-TA-TC-AATT-A---GAAAAT--T--AGTC----AGC-TGCAGA---TGACGTGGAGTCAT-CCAATA---------AACCC-C-GC------ATT-GTGTTGT-------T-AACCAAATC--AC-GTA-T-CCAT-GT-A----------------GGCTT-TGT--AT-CCA-A-GCTTAG-TGAA--TTTCGA--CTG-A--TTTGAGACATTA-TAGGTTAT-ACAT--AGTGTGAAAACCTCGTGA-----CCCA-TT-ATATTC-CCTACACTG-GAACA-AATA-AC-CT--GCTG-T-GAA--GC-AAA--TTAG----AT--AAA-CTGGAC-AT-GTACAT---GAT-AAAACT-TAGAAAACT-GATTATAT-C-A-CC-TTCCT-A-ACAA----TC--GTA-AGTTTCA-----A-GAA---A--ATTTA--AA--AG--------------------CTA--------CAC---------ATATTAAGA-G-T-TG----TTTA--CAC-ATCCAAGCT-AAAGAAAG-CTGC-CTTCATT-AGTTCAAAACTG-TGT-ACT-TTG-AATAT---TGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-CCCAGCATTA-T---TG-T-AT-AAATGGAG----AAGCA----ACAC-T-TC--ATTACTTTCTTTCTATCATGAGAGGCACATTAA-----TA--AAA-----TTACAAGTATATACAATTGTAAAT-A-----TTCTTTACAA-TAAAA-TGTTTTGCATGCATTA-CATAAATAAGAGG-TTAAATATAAT--TT-TTGTTATCAATTTTGAAAC-A-AC-A-T-ATTATATTTTAGATGTTTAAACATT-ATTAATTT---TGTCTTACTGTAAAA-C-CCATACT-TGATCAT--CCAAATAC---ATGATCA-TTTTCTCC---ATTGA-GCCCATTTTGTGTATTAT-GCCATTTGCTAA-A-CGC--TTTCACTCCAA--AAAATAG
gi|10 : tgaaatactatgacacagaatgcacattcagaactgctacagtcaaaactgccatagcgacccacctgtgtaacacccactcacatgttgaccataaacaaattcccccaacgtaccctataactattactaattatacgacactgtactgaccgcgacaacgaccatgatG-TGT-ACA-ATGAA-TAT---TGTGGTTTATT-TA-AGTGTCTT--TCAATG-AT-----TTG-AGTAAATT-TTCAGCATTATT--GTA-T-AT-T-ATAAgcaac
gi|10 : TT-TCTATCATGA-GAGGTGCT-GT-TA-TAAAATTACAAGTATA-TATATGTGTA--AATA--TTCTTT--------------AC---AATACGGTA--GAA-TGTTTTGCATGCAT-TTCA----TAAAT-AAggagaagcaacacttcattactttctttctatcatgagaggtgctgttataaaattacaagtatatatatgtgtaaatattctttacaatacggtagaatgttttgcatgcatttcataaataa
gi|11 : gtgtacaatgaatattgtggtttatttaagtgtctttcaatgatttgagtaaattttcagcattattgtatattataaggagaagcaacacttcattactttcACCTGT-------CA----TAT-G-TGACCTTTTTTCAAGTCTCTGATGGA-AGGTC------T--C-----TTAATACAGGTTTG-ACTGTATTTTAAA-AAAGTA-G-TGTTAAACCACATTTCATGTAAATACCTGCAGAATCCACATGATAGAAGGTA
gi|12 : tgtattaagagaccTTTTGCAA-C-C-AT-TT-CGTGTA-T-T----TTCATGATATTTT-ACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ACGCGATTCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-A-TTTAATCTG-A-G-AG-TTA-T-CGCCCCT--AA-----CAC-TTTCG--TTT-
gi|15 : gatTTTTACAA-C-C-AT-TT-CGTGTA-G-T----TTCATGAAAATTTT--CCT-TATTTAA-CAATTACC-------GC-A-TAT--TTTTGTATTA--CA-ACt
gi|16 : tgatgcaaccaacgaacaggatTTTTACCTT-TATTCAG-TG---ACC-------AT-A-TAT--TTTACGATTA--CA-ACGCGATCCC-TAC--T---T-TCCA--TTGCGATTGAGCGT-G-GTTAATCTG-A-G-AG-TTA-C-CACCCCT--AAatattcc
gi|17 : AAT-AAGAGGTTATATA-AA-TACAA-T-TCTTG------TTA-TC-AACTATGAAA-C--AACTTAATTATT-ATATTTTAAATTTT----TAA-AC-ATT-ATTA-ATTT----TGTC------TT-A------T---Tc
gi|18 : c-TT-ATATTC-CCTACAATG-GAA-A-ATTT-AC-CTG-GCTGT--GAT--GCAAA---TTAG----ATTAAGA-CTGTGC-ATGAGAC-T---GAT-AAAACT-TAGAAAACTGGATTATT
gi|19 : CTGT-------CA----TAG-TGTG--CCTTTTTCAA-TCTCCAATGGA-AGGTC------T--------CTAATACAGG--TGAACTGTATGT---------TATAATTATAAGCTACATT
gi|2 : taagatgaccaTTTTGCAA-C-C-AT-TT--GTGTA-T-T----TTC--GATATTTTTACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGAT-A--CA-ACGCGATTCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-G-GTTAACCTG-A-G-AG-TTA-T-CG-CCCT--AAT---TCACTTTTCG--ATT-G----ACATGCG-C----AGA------AAA-GTTGGT-GGTG--ATTCTGAT--T-TGTT--G--A-ACTC--TAAAACTT--AGGA-T-T-T-ACCC--AAATT-TA-TC-AATT-AAT-GAACAGG-T--AGTC----AGCGTGCAGG-T-CG--GTGGAGTCATTCCGATA---------AATCC-C-GA------GTT--T-TTGT-------TTAACAAAATC--AT-GAA-T-C-AT-GTCA-AT-G-A--AACAA-TGGCTTGTGT-TAT-CCG-A-GGT--G-TGAA--TTTCGA--CTG-A-CTTTGAGA-ATTG-TA-G--GT-AGATTAGGTGTG-AA-CCTGGTGA-----CCCA-TT-ATTATC-CATAC-ATG-GAA-A-ATTA-AC-CTG-ACTG-T-GAC--GCAAAA--TTAG----AT--AGA-CTGTGC-ATAGGAC-T---GATAAAAACT-TAGAAAACTGGATTATTTGCGA-CCTTTCCTGA-ACGAGATATC--GTA-GTTTTCA-----A-GAA-T-A--TTTTAATAT--AGTGT-------CTTGACCGGACTAGC-AG-TTCAC-T-TC-AACATATTACGATG-T-TG----TTGA--CACAATCC-AGCT-AAAGAAAGCCCGC-C-GCATT-AGTTCAAAACTG-TAT-A-A-ATG-AATAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTA-T--GTG-T-AT-TAATAAAATTACAAGTAAA-TACGC-TGTA--AATA--TTCTTT--------------AC---AA-----TA--GAA-TG-TTTGCATGCAT-TTCA----TAAATGAAGATGTTATATATAA-TATAATT-TTTTG------TTT-AA-AACTATG-AA-C--AACATAA-TATT-TTATTTTAGATTTT----T-A-AC-ATT-ATTA-ATTT----TGTC------TT-A------C---TGT-------TAAAC-C-CCATACT-TG-TAAT-CCCAAGTAC---ATGAT-A-TTTTCTCCAATATGAA-GCACATTTCGTGTATTAT-ACCATTT-CTAA-A-AGC--ATTCACCTCCA--AAAATAGCGACCTGT-------CA----TAT-TGTA--CCTTTTTCAAGTCTCCAATGGA---GTC--------TC-----TTAATACAGG-TTG-ACTGTATGT---GCAAAGTA-AATTTTAA-----GTTTTAT-T---TACCTG-----TTCACCTGA-AGGAGATA
gi|20 : GCT-AAAGAAAC-CCGC-CTGTATG-AGTTCAAAACTG-TGT-ACA-ATG-AGTAT---CATGG----TG-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-Tt
gi|21 : atACCTGT-------CA----C---T-T----CTTTTCCCATTCTCCAATAGATA-GTCTATTATT-TA-----TTAGTACAAATTTG-ACTGTA
gi|22 : tgtattaagagaccCCTGT-------CA----C---T-T----CTTTTCCAATTCTCCAATAGATA-GTC------TATCATTTATTAGTACAAATTTG-ACT
gi|24 : tgtattaagagactgTTTTGCAA-C-C-AT-TT-CGTATA-T-T----TTCACGATA-TTTTACCTT-TATTCAG-CC---ACC-------A
gi|25 : atTTTTGCAA-C-T-GT-TT-CGTGTA-T-T----TTCATGATA
gi|3 : cacgaccaacgaccatgatTCTTGCAA-CTC-AT-TTGCGTGTA-T-T----TTCTTGATATT---ACCTTATAT-CAGTCG---ACC-------ATTA-TAT--TT--CGATT---CA-ACGCGATCC--TAC--TCCAT-TCGA--TTTCAA--GAACGT-G-GTTAATCTG-AAG-AG-TTA-TTCG-CCCT--ACCCTGTGACTGTTCGATCTT-G----A-AC-CG-C----ACGTGTAATAAG-TTTGATCGGTGTAATTC-GAAAAT-TGTG--G--A-ATTC--T-AA--CT--AGGATT-T-T-AGCC--AA--T-TAGTC-AAT--AAC-GAACAGG-T--AGTC----AGCGT----------------------------A---------AACCCAT-GT------GTTTGT-TTGT-------T--ACAAAATC--A--GGA-T---AT-GT-A-TT-GGA--AACAA-CGGCTT-TGT-ATT-CCA-A-GGT--G-TGGAATTTTCGAACTTG-A-GTTT-AGA-ATTGATAGG--GT-AGATACGGTGTAAAA-TCTGGT-A-----CGCAGTT-ATATTC-C-TA-AATG-GAA----TTA-AC-C-A-ACTGTT-GACT-GCCAAA--TAGG----ACTAAAG-CAGTGC-ATGGGA--T---GCTAAGTACTGTAGAAAACTGGA-TA-TTGCGA-CCTTTCTAAG-ACGAGATGTCCGGTACGTTTCTA-----ACGAA-TAA--TTTTA--A---AGTGTAGA----CATGACAGGACTAAG-AGTTTCAC-T-TCAAACATATTACGA-G-TCTGT---TTGAAGCAC-ATCC-A-CT-AAAGAAAG-CTG--CTGCATT-AGTTCAAAACTG-TGTAACACAGGAAATCC--GTGTGGTTTATTCTA-A-TGTCTT--TTATTGCAT-----TTGAAATAAATTCTCCAGCATT
gi|3 : att-T-ATGTAATAAAATTACAAGTATAGTACACGTGTACGAATT--GTCTT---------------ACGA-AA-----TC--ATA-TG-GTTGCA-GCATGTTCA----TAAAT-AAGAG--TGT-AA-AA-TATAA-C-TTTTG------TTATCA-AATTATGAGA-G--AAC-CAAATATC-TT----TAGATTTT----T-ACAC-ATT-ATAA-TTTT----TGTC------TTTC------C---TGT-------TAAACGC-CTATACT-TGATCAT-CGCAAGTAA---TTGATCATTTTTCTCC---ATTGACGGACATTTCGTGT-TTAT-AACATTTGCTGATACAGCTTTTTCACTCCAA--GAAAAGGCGACCTtatttttttttttttttttttttttttgtataaatggagaagcatactcttcaaatatctttctttcttatcactgagaggatatgtaataaaattacaagtatagtacacgtgtacgaattgtcttacgaaatcatatggttgcagcatgttcataaataagagtgtaaaatataacttttgttatcaaattatgagagaaccaaatatctttagatttttacacattataatttttgtctttcctgttaaacgcctatacttgatcatcgcaagtaattgatcatttttctccattgacggacatttcgtgtttataacatttgctgatacagctttttcactccaagaaaaggcgacct
gi|4 : atttcttgcaactcatttgcgtgtattttcttgatattaccttatatcagtcgaccattatatttcgattcaacgcgatcctactccattcgatttcaagaacgtggttaatctgaagagttattcgccctaccctgtgactgttcgatcttgaaccgcacgtgtaataagtttgatcggtgtaattcgaaaattgtggaattctaactaggattttagccaattagtcaataacgaacaggtagtcagcgtaaacccatgtgtttgtttgttacaaaatcaggatatgtattggaaacaacggctttgtattccaaggtgtggaattttcgaacttgagtttagaattgatagggtagatacggtgtaaaatctggtacgcagttatattcctaaatggaattaaccaactgttgactgccaaataggactaaagcagtgcatgggatgctaagtactgtagaaaactggatattgcgacctttctaagacgagatgtccggtacgtttctaacgaataattttaaagtgtagacatgacaggactaagagtttcacttcaaacatattacgagtctgtttgaagcacatccactaaagaaagctgctgcattagttcaaaactgtgtaacacaggaaatccgtgtggtttattctaatgtcttttattgcatttgaaataaattctccagcatttatttttttttttttttttttttttttgtataaatggagaagcatactcttcaaatatctttctttcttatcactgagagga------AAG-TTATGT-GGTG--ATTCTGAT--TCTGTT--G--GCAC-C--T-ACACTTC-GGGATT-T-TTACCC--AAAAT-TA-TC-AATT-AACTGAACATAAT--AGTC----A-CGTGCAGG-G-TC--GTGGAA-CAT-CCGATA---------AATCT-CAGAAGTTCGGCT-GT-TTGT-------TAACCAAAATCTTAT-GGACT-C-AT-GT-A-AT-G-A--A-CAA-TG-CTT-TGTATAT-CTA-AAGGT--GGTGAA--TTCCGA--CTGTA-CTTTGAGA--TTG-TAGG--GTGAAAT--AGGGCGAAA-CCTGGTGATCACACCTA-TTGATATTCACCTACAATGTGAA-ATATTACACGCTGTGCTGTTTGACAAGCAAAGATTTAGCATCATTAAGAACTGTACTATG--AC-TAGGGATAAAA--C-TAGAAA-CTGGAT-AT--GTGATCCTTCCCTAATACGA-ATTCC--GTAAGTTTCCATCATTA-GAAAT-AAATTTTA--AGGAAG-GTAGAACCACATGACCTGAC-AGCTAG-TTCACATATC-AACATATTG-GA-GAT-TGATGATCGA--CAC-CACC-AGCTTAACGAAAA-CCGTTCTGCATTTAGTTACAAACTGCTGT-ACAGATGAAATATTAGT-TGGTTTATT-TATA-TGTCTTAATCAA-G-ATGAATATTG-AATAAATT-TCCAGCATTA-T---TG-TCAT-TAA
gi|4 : T--------------AC---AA-----TACGGAACTG-TTTGCA----------------AAT-AGCAGGTTAT-TA-AAATACGA-TATTTTT------TTATCA-AGCTATGAAAAC--AACACAATTATTATTATTTTAGATTTT----A-A-ACAATTAATTA-ATTT----TTTG------TT-A------CTCATGT-------TAAAC-CACCATACTGTGAT-ATACTCAAATATACAATGAT-ATTTTTCTCC---ATTGT-G-ACATTT-GT-TATTATAACCATTGCCT---A-AGC--TTTCACTTCCAATAAAATAGCGACCTTTAAGAGACCACTTCTATGC-TG--CCTTTTCAAAGGCTCC-ATGGACTGGTC------T-CC-----TTAATACAGGTTaaggagaagcaacacttcatactttcttttctatcaatgagaggctactggttataaagatacaacagtatcatacaatacggaactgtttgcaaatagcaggttattaaaatacgatatttttttatcaagctatgaaaacaacacaattattattattttagattttaaacaattaattaattttttgttactcatgttaaaccaccatactgtgatatactcaaatatacaatgatatttttctccattgtgacatttgttattataaccattgcctaagctttcacttccaataaaatagcgacctttaagagaccacttctatgctgccttttcaaaggctccatggactggtctccttaatacaggtt
gi|5 : aagttatgtggtgattctgattctgttggcacctacacttcgggatttttacccaaaattatcaattaactgaacataatagtcacgtgcagggtcgtggaacatccgataaatctcagaagttcggctgtttgttaaccaaaatcttatggactcatgtaatgaacaatgctttgtatatctaaaggtggtgaattccgactgtactttgagattgtagggtgaaatagggcgaaacctggtgatcacacctattgatattcacctacaatgtgaaatattacacgctgtgctgtttgacaagcaaagatttagcatcattaagaactgtactatgactagggataaaactagaaactggatatgtgatccttccctaatacgaattccgtaagtttccatcattagaaataaattttaaggaaggtagaaccacatgacctgacagctagttcacatatcaacatattggagattgatgatcgacaccaccagcttaacgaaaaccgttctgcatttagttacaaactgctgtacagatgaaatattagttggtttatttatatgtcttaatcaagatgaatattgaataaatttccagcattattgtcattaaaaggagaagcaacacttcatactttcttttctatcaatgagaggctactggttataaagatacaacagtatcaTTTTGCAA-A-C-AT-AT-TACG-A-T-TCGATTTCATGATATTATTAACTT-TATTCAG-TG---ACCCATTTCTAT-A-TGTAGTTTCCGATTA--CA---GGAGTCCTGTACGTT---C-TCCATGTTTCGATCGTGCGT-ATGTTAATCTGAA-G-AG-TTATT-CG-CCCTC-GA-----GA-TGTTCGTTTTT-G----A-ATGCG-CATGTATG------AAGTTTTGGT-G--G--ATTCTGAT--T-TGCTTGG--A-ACTCGGT-AACTTC--AGGATTGTAT-ACCCCAAAA-TATA-TCAAATTAAAC-GAACATT-TGAAGTCGACAGGCGTGCAGGTG-TG--A-GGAAAAATTTCAATAATAATATATAA------GA------GTT-GT-TCGTTATATTGTTAATGAAACA--ATAGGA-TGC-ATAGT-AGATAG-ATTAACAATTGGCTT-AGT-TATACTAGA-GGT--G-TGAAATTTTCGA---TG-AGCATGGAGA-AATG-TAGG--G
gi|6 : atTTTTACAA-C-C-AT-TT-CATGTG-A-T----TTCATGATATATT-ACCTT-TATCTAA-CA---ACC-------AT-A-TAT--TTTTCGATTA--CC-ATACGATCCC-TAA--T---T-TTGA--TTTCGGTCGAGCTT-G-GCTAATTGG-A-G-AC-TTA-T-CG-TCCC--AA----AAACTTTT-G--TTT-AAACTACATGGGTT----ATG--------G-TTCGTT-GGTG--ATTTTGTA--T-TGTT--GGCA-ACTG--T-AA---TGGAGGATT-T-T-ATCC--TAC-C-TA-TC-AATT-gt
gi|7 : ataaaataatgcctatagatgaacacttagaaatacagtaaatctgctatagcggcccactgtattaagcaactcactgtatgaccgtaaaattccccttcccccctggcgttaccctatatattgcattaaacaaccacctgtctgacgcgactaacggccatgatTAGTTTATT-TA-A-TGTCTT--T---------------------AATT-TCCAGCATTA-T--
gi|7 : -TAATAAAATTACAAGTATA-TACACGTGTA--AATA--TTCTTT--------------AC---AA-----TA--GAATTT-TTTGCATGCAT-TTCA----TAAAT-AAGAGG---T-TA-GA-TATAA-T-TTTTG------TTA-TC-AATTATGAAA-C--AACAT-ATTA----TATCTTAGATTTT----TCA-AC-ATT-ATTA-ATTT----TGTC------TT-A------C---TGT-------TAAA--C-CCATAAT-TGAT-----CCAAATAC---ATTATCG-TTTTCTCC---ATTGA-GACCATTTtctataaaaagagaagcaactcttcattactttctttctatcatgagagttactgtaataaaattacaagtatatacacgtgtaaatattctttacaatagaattttttgcatgcatttcataaataagaggttagatataatttttgttatcaattatgaaacaacatattatatcttagatttttcaacattattaattttgtcttactgttaaacccataattgatccaaatacattatcgttttctccattgagaccattt
gi|8 : tagtttatttaatgtctttaatttccagcattattctataaaaagagaagcaactcttcattactttctttctatcatgagagttactgTTTGGCAA-C-CGATGTT-CGTG-A-T-T----TTC-TGAT--TTTTACCTT-TATTCAG-CGA--ACC-------AT-ACTAT--TTTCCGATTAAGCACACGCGATCCC-TAC--T---T-TATGATTTTCGATTGAGCGTGG-GTTAATCT----G-AG-TTA-T-CG--CCT--AAT---TGAC-TTTCG--TT
gi|9 : atagtacagtcaaaactgcaatatgcgacctactgtattaagcgactcactgtcacaggtgtgaccataaacattccccccaaagcgttaccctatatttacctgtattaaacgacactgtctgacgcgaccacgaccatgataG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ATGCGATCCC-TAT--T---T-TC-A--TTTCGATTGAGTGT-G-GTTAATCTG-A-G-AG-TTA-T-CG-CCCCTAAATA--TAACTTT-CG--TTTTG----A-ACGCG-C----ACGTAAT--AAG-TTTTAT-GGTG--ATTCTGAT--T-TGTT--G--GCATTC--T-AAACTT--AGGATT-T-T-ACCC--AAA-T-TA-TC-AAGT-AAG-GAACATG-T--AGTC----AGCGTGCAGG-GTTGT-GTGGAGTCA-TCTGATA---------AACCC-T-GAGTT---GTT-GT-TTGT-------TTAACAAAATC--TT-GG--T-C-AT-GT-A-TT-G-A--AACAA-TGGCTT-TGT-TAT-CCgaaac
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TACAGTTTAGACTGCAATTGTGCACAAACCCACTGTATAAGCAAGTCACTGTTATATGTGACCATGAAAATTCCCTGCAAGGCATTACCCTATGTGTTGTACCTGTATTAAATGATCACCAGTCTGATGTGACCAAG
Unaligned ( gi|14 ): TGATAAACTAATGTAGATCTTATCAAGTACAGTCAAAACTGCCATAGCGACCCACTGTATTAAGCGACTCACTGTCATATTTTACCTGTTTTAAACAACCACCTGTCTGACGCGACCAA
Unaligned ( gi|23 ): ACATAAAAATAAGACAATGCAACATTTAAAGTACAGTCAAAACTGCCATAGCGACCCA
Unaligned ( gi|26 ): TACAGTCAAAACTGCCGTAGCAACCCACTGTATTAAGCGACTCACTG
Alignments
lowQualScore : 111 1111111 11 11 333333 11 1 1111 333333333333 1111 2222222 11111 1111 4444444444444444444444444444444444444444444444444 222222222 11111 111 222222222 11 11 22 111 11 11111 22 11 22222 111 111 111 11 111 1111 11 111 1 1 111 1 11 2 2222222 222222 555555555555555555 222222 222222 1 111 3333 11 1 1 11 1 1 222 11111 22222 1 11 11 4444444444444444444 11111 1111 1 1 1111 2 1 111 111111 1111 1111 222222 1111 22222222222222222222 2222222 11 11111 111 222 111 1 11111 11 11 55555555555555555555555 222 444444444444444 44444 111 111 22222 22222 1
lowQualScore : 4 4 4 8 4 0 4 4 8888 4 2 8 4 4 000 1111111 4 4 55 55 4 4 66 777 4 2 22 555 4 4 4 4 4 4 8 00 555555 3 33 5 5 0 1 4444 999999999999 5 6666 0 77 888 5 999 8888 77 6666666 5 999 77 77 5 5 5 5 5 77 22222 4444 0000000000000000000000000000000000000000000000000 6 6 444444444 22222 6 111 6 6 111111111 3 6 6 00 6 8 8 11 8 55 444 8 33 88 8 55555 0 77 33 2 55555 8 8 8 5 5 8 666 8 8 222 999 99 5 444 7777 11 8 8 66 8 444 0 0 8 0 11 66 2 2 0 3 111 5 4 33 0 6666666 888888 555555555555555555 3 55 3 222222 666666 8 0 111 1111 33 0 0 8 8 11 0 8 6 6 3 5 1 444 1 5 5 5 77 1 5 44444 5 5 00000 6 6 5 0 999 0 11 11 1111111111111111111 66666 99 7777 1 3 4444 5 0 55 1 0 3 6 0 333 999999 8888 2222 3 3 6 1 555555 6 6 6 6 4444 99999999999999999999 6666666 33 8 8 0 99999 444 444 444 8 99 6 2 3 0 8 55555 33 1 33 00000000000000000000000 6 1 888 999999999999999 7 8 88888 666 444 0 77777 66666 1 5
lowQualScore : . . . . . . . . .... . . . . . ... ....... . . .. .. . . .. ... . . .. ... . . . . . . . .. ...... . .. . . . . .... ............ . .... . .. ... . ... .... .. ....... . ... .. .. . . . . . .. ..... .... ................................................. . . ......... ..... . ... . . ......... . . . .. . . . .. . .. ... . .. .. . ..... . .. .. . ..... . . . . . . ... . . ... ... .. . ... .... .. . . .. . ... . . . . .. .. . . . . ... . . .. . ....... ...... .................. . .. . ...... ...... . . ... .... .. . . . . .. . . . . . . . ... . . . . .. . . ..... . . ..... . . . . ... . .. .. ................... ..... .. .... . . .... . . .. . . . . . ... ...... .... .... . . . . ...... . . . . .... .................... ....... .. . . . ..... ... ... ... . .. . . . . . ..... .. . .. ....................... . . ... ............... . . ..... ... ... . ..... ..... . .
lowQualScore : 0 0 0 0 0 8 0 0 5555 9 0 1 0 0 000 8888888 0 0 55 55 0 4 11 888 4 9 22 222 4 4 4 4 4 4 9 66 444444 2 88 0 7 8 0 2222 777777777777 7 1111 7 99 444 7 333 0000 99 1111111 7 444 99 11 7 7 7 7 7 77 00000 2222 3333333333333333333333333333333333333333333333333 7 7 333333333 88888 7 777 7 7 222222222 2 7 7 22 7 0 0 00 0 88 222 0 00 88 0 22222 2 55 22 5 00000 0 0 0 0 6 0 888 0 0 000 444 00 6 888 0000 22 0 0 44 0 000 6 8 0 8 66 88 5 5 0 2 888 0 5 88 0 0000000 000000 000000000000000000 5 00 2 222222 555555 8 0 000 2222 88 0 0 0 0 22 8 0 7 7 3 5 7 222 0 7 7 7 99 4 7 33333 7 0 88888 7 7 7 8 888 0 00 00 0000000000000000000 77777 22 5555 7 3 2222 7 1 77 5 0 3 7 3 555 222222 5555 7777 5 5 7 7 333333 7 7 7 7 2222 00000000000000000000 0000000 00 0 0 8 66666 000 444 000 0 44 5 5 2 0 8 00000 88 0 88 22222222222222222222222 7 7 222 888888888888888 3 0 77777 777 000 7 55555 55555 0 5
consensus : TTTTGCAA-C-C-AT-TT-CGTGTA-T-T----TTCATGATATTTTTACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ACGCGATCCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-G-GTTAATCTG-A-G-AG-TTA-T-CG-CCCT--AAT---TNACTTTTCG--TTT-GA-ACGCGC----ACG------A-----AG-TTTGGT-GGTG--ATTCTGAT--T-TGTT--G--A-ACTC--TAAA-CTT--AGGATT-T-T-ACCC--AAA-T-T-A-TC-AATT-AAC-GAACATG-T--AGTC----AGCGTGCAGG-G-TG--GTGGAGTCATTCCGATA---------AACCC-C-GA------GTT-GT-TTGT-------TTAACAAAATC--AT-GGA-T-C-AT-GT-A-AT-G-A--AACAA-TGGCTT-TGT-TAT-CCA-A-GGT--G-TGAAATTTTCGA--CTG-A-CTTTGAGA-ATTG-TAGG--GT-AGAT--GGTGTGAAA-CCTGGTGA-----CCCA-TT-ATATTC-CCTACAATG-GAA-A-ATTA-AC-CTG-GCTGTT-GAC--GCAAAA--TTAG----ATTAAGA-CTGTGC-ATGGGAC-T---GATAAAAACT-TAGAAAACTGGATTATTTGCGA-CCTTTCCTAA-ACGAGATNTC--GTA-GTTTCCA-----A-GAA-T-A--TTTTA--AN--AGTGTAGA----CATGACCGGACTAGC-AG-TTCAC-T-TC-AACATATTACGA-G-T-TG----TTGA--CAC-ATCC-AGCT-AAAGAAAG-CCGC-CTGCATT-AGTTCAAAACTG-TGT-ACA-ATGAAATAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTA-T--GTG-T-AT-TAATAAAATTACAAGTATA-TACACGTGTA--AATA--TTCTTT--------------AC---AA-----TA--GAA-TG-TTTGCATGCAT-TTCA----TAAAT-AAGAGGTTAT-TA-AA-TATAA-T-TTTTG------TTA-CA-AACTATGAAA-C--AACATAATTATT-TTATTTTAGATTTT----T-A-AC-ATT-ATTA-ATTT----TGTC------TT-A------C---TGT-------TAAAC-C-CCATACT-TGATCAT-CCCAAATAC---ATGATCATTTTTCTCC---ATTGA-GNACATTTCGTGTATTAT-ACCATTTGCTAA-A-AGC--TTTCACTCCNA--AAAATAGCGACCTGT-------CA----TAT-T-TG--CCTTTTCCAAGTCTCCAATGGATAGGTC------T-TC-----TTAATACAGGTTTG-ACTGTATGT---G-AAAGTA-AATTTTAAGCCACGTTTCATGTAAATACCTGCAGAATCCACNTGATAGGAGGTA
Reference ( family-28 ) : TTTTGCAA-C-C-AT-TT-CGTGTA-T-T----TTCATGATATTTTTACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ACGCGATCCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-G-GTTAATCTG-A-G-AG-TTA-T-CG-CCCT--AAT---TNACTTTTCG--TTT-GA-ACGCGC----ACG------A-----AG-TTTGGT-GGTG--ATTCTGAT--T-TGTT--G--A-ACTC--TAAA-CTT--AGGATT-T-T-ACCC--AAA-T-T-A-TC-AATT-AAC-GAACATG-T--AGTC----AGCGTGCAGG-G-TG--GTGGAGTCATTCCGATA---------AACCC-C-GA------GTT-GT-TTGT-------TTAACAAAATC--AT-GGA-T-C-AT-GT-A-AT-G-A--AACAA-TGGCTT-TGT-TAT-CCA-A-GGT--G-TGAAATTTTCGA--CTG-A-CTTTGAGA-ATTG-TAGG--GT-AGAT--GGTGTGAAA-CCTGGTGA-----CCCA-TT-ATATTC-CCTACAATG-GAA-A-ATTA-AC-CTG-GCTGTT-GAC--GCAAAA--TTAG----ATTAAGA-CTGTGC-ATGGGAC-T---GATAAAAACT-TAGAAAACTGGATTATTTGCGA-CCTTTCCTAA-ACGAGATNTC--GTA-GTTTCCA-----A-GAA-T-A--TTTTA--AN--AGTGTAGA----CATGACCGGACTAGC-AG-TTCAC-T-TC-AACATATTACGA-G-T-TG----TTGA--CAC-ATCC-AGCT-AAAGAAAG-CCGC-CTGCATT-AGTTCAAAACTG-TGT-ACA-ATGAAATAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTA-T--GTG-T-AT-TAATAAAATTACAAGTATA-TACACGTGTA--AATA--TTCTTT--------------AC---AA-----TA--GAA-TG-TTTGCATGCAT-TTCA----TAAAT-AAGAGGTTAT-TA-AA-TATAA-T-TTTTG------TTA-CA-AACTATGAAA-C--AACATAATTATT-TTATTTTAGATTTT----T-A-AC-ATT-ATTA-ATTT----TGTC------TT-A------C---TGT-------TAAAC-C-CCATACT-TGATCAT-CCCAAATAC---ATGATCATTTTTCTCC---ATTGA-GNACATTTCGTGTATTAT-ACCATTTGCTAA-A-AGC--TTTCACTCCNA--AAAATAGCGACCTGT-------CA----TAT-T-TG--CCTTTTCCAAGTCTCCAATGGATAGGTC------T-TC-----TTAATACAGGTTTG-ACTGTATGT---G-AAAGTA-AATTTTAAGCCACGTTTCATGTAAATACCTGCAGAATCCACNTGATAGGAGGTA
gi|1 : TTTTGCAAAC-C-ACCTT-CATGTAGTAT----TTCGTCATATATT-ACCTT--ATTCAG------ACC-------AT-A-TAT--TTTTCAATTA--CA-CC----TCCC-TAC--T---TATCCA--TT-CGATCG-GC------TTTATCTG-A-GCAGATTA-T-CC-CCCT--AA-----CACTTTCAT--TTT-GA-ACCC-C----ACA------T-----AA-TTT----------AATCTATC--T-TGT---G--C-ATTC--TAAA--TC--AGGGAT-T-T-ACCC--AAA-T-T-A-TC-AATT-A---GAAAAT--T--AGTC----AGC-TGCAGA---TGACGTGGAGTCAT-CCAATA---------AACCC-C-GC------ATT-GTGTTGT-------T-AACCAAATC--AC-GTA-T-CCAT-GT-A----------------GGCTT-TGT--AT-CCA-A-GCTTAG-TGAA--TTTCGA--CTG-A--TTTGAGACATTA-TAGGTTAT-ACAT--AGTGTGAAAACCTCGTGA-----CCCA-TT-ATATTC-CCTACACTG-GAACA-AATA-AC-CT--GCTG-T-GAA--GC-AAA--TTAG----AT--AAA-CTGGAC-AT-GTACAT---GAT-AAAACT-TAGAAAACT-GATTATAT-C-A-CC-TTCCT-A-ACAA----TC--GTA-AGTTTCA-----A-GAA---A--ATTTA--AA--AG--------------------CTA--------CAC---------ATATTAAGA-G-T-TG----TTTA--CAC-ATCCAAGCT-AAAGAAAG-CTGC-CTTCATT-AGTTCAAAACTG-TGT-ACT-TTG-AATAT---TGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-CCCAGCATTA-T---TG-T-AT-AAATGGAG----AAGCA----ACAC-T-TC--ATTACTTTCTTTCTATCATGAGAGGCACATTAA-----TA--AAA-----TTACAAGTATATACAATTGTAAAT-A-----TTCTTTACAA-TAAAA-TGTTTTGCATGCATTA-CATAAATAAGAGG-TTAAATATAAT--TT-TTGTTATCAATTTTGAAAC-A-AC-A-T-ATTATATTTTAGATGTTTAAACATT-ATTAATTT---TGTCTTACTGTAAAA-C-CCATACT-TGATCAT--CCAAATAC---ATGATCA-TTTTCTCC---ATTGA-GCCCATTTTGTGTATTAT-GCCATTTGCTAA-A-CGC--TTTCACTCCAA--AAAATAG
gi|10 : tgaaatactatgacacagaatgcacattcagaactgctacagtcaaaactgccatagcgacccacctgtgtaacacccactcacatgttgaccataaacaaattcccccaacgtaccctataactattactaattatacgacactgtactgaccgcgacaacgaccatgatG-TGT-ACA-ATGAA-TAT---TGTGGTTTATT-TA-AGTGTCTT--TCAATG-AT-----TTG-AGTAAATT-TTCAGCATTATT--GTA-T-AT-T-ATAAgcaac
gi|10 : TT-TCTATCATGA-GAGGTGCT-GT-TA-TAAAATTACAAGTATA-TATATGTGTA--AATA--TTCTTT--------------AC---AATACGGTA--GAA-TGTTTTGCATGCAT-TTCA----TAAAT-AAggagaagcaacacttcattactttctttctatcatgagaggtgctgttataaaattacaagtatatatatgtgtaaatattctttacaatacggtagaatgttttgcatgcatttcataaataa
gi|11 : gtgtacaatgaatattgtggtttatttaagtgtctttcaatgatttgagtaaattttcagcattattgtatattataaggagaagcaacacttcattactttcACCTGT-------CA----TAT-G-TGACCTTTTTTCAAGTCTCTGATGGA-AGGTC------T--C-----TTAATACAGGTTTG-ACTGTATTTTAAA-AAAGTA-G-TGTTAAACCACATTTCATGTAAATACCTGCAGAATCCACATGATAGAAGGTA
gi|12 : tgtattaagagaccTTTTGCAA-C-C-AT-TT-CGTGTA-T-T----TTCATGATATTTT-ACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ACGCGATTCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-A-TTTAATCTG-A-G-AG-TTA-T-CGCCCCT--AA-----CAC-TTTCG--TTT-
gi|15 : gatTTTTACAA-C-C-AT-TT-CGTGTA-G-T----TTCATGAAAATTTT--CCT-TATTTAA-CAATTACC-------GC-A-TAT--TTTTGTATTA--CA-ACt
gi|16 : tgatgcaaccaacgaacaggatTTTTACCTT-TATTCAG-TG---ACC-------AT-A-TAT--TTTACGATTA--CA-ACGCGATCCC-TAC--T---T-TCCA--TTGCGATTGAGCGT-G-GTTAATCTG-A-G-AG-TTA-C-CACCCCT--AAatattcc
gi|17 : AAT-AAGAGGTTATATA-AA-TACAA-T-TCTTG------TTA-TC-AACTATGAAA-C--AACTTAATTATT-ATATTTTAAATTTT----TAA-AC-ATT-ATTA-ATTT----TGTC------TT-A------T---Tc
gi|18 : c-TT-ATATTC-CCTACAATG-GAA-A-ATTT-AC-CTG-GCTGT--GAT--GCAAA---TTAG----ATTAAGA-CTGTGC-ATGAGAC-T---GAT-AAAACT-TAGAAAACTGGATTATT
gi|19 : CTGT-------CA----TAG-TGTG--CCTTTTTCAA-TCTCCAATGGA-AGGTC------T--------CTAATACAGG--TGAACTGTATGT---------TATAATTATAAGCTACATT
gi|2 : taagatgaccaTTTTGCAA-C-C-AT-TT--GTGTA-T-T----TTC--GATATTTTTACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGAT-A--CA-ACGCGATTCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-G-GTTAACCTG-A-G-AG-TTA-T-CG-CCCT--AAT---TCACTTTTCG--ATT-GACATGCGC----AGA------A-----AA-GTTGGT-GGTG--ATTCTGAT--T-TGTT--G--A-ACTC--TAAAACTT--AGGATT-T---ACCC--AAA-T-TTA-TC-AATT-AAT-GAACAGG-T--AGTC----AGCGTGCAGG-T-CG--GTGGAGTCATTCCGATA---------AATCC-C-GA------GTT--T-TTGT-------TTAACAAAATC--AT-GAA-T-C-AT-GTCA-AT-G-A--AACAA-TGGCTTGTGT-TAT-CCG-A-GGT--G-TGAA--TTTCGA--CTG-A-CTTTGAGA-ATTG-TAGG---T-AGATTAGGTGTGAA--CCTGGTGA-----CCCA-TT-ATTATC-CATACA-TG-GAA-A-ATTA-AC-CTG-ACTGT--GAC--GCAAAA--TTAG----AT--AGA-CTGTGC-ATAGGAC-T---GATAAAAACT-TAGAAAACTGGATTATTTGCGA-CCTTTCCTGA-ACGAGATATC--GTA-GTTTTCA-----A-GAA-T-A--TTTTAATAT--AGTGT-------CTTGACCGGACTAGC-AG-TTCAC-T-TC-AACATATTACGATG-T-TG----TTGA--CACAATCC-AGCT-AAAGAAAGCCCGC-C-GCATT-AGTTCAAAACTG-TAT-A-A-ATG-AATAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTA-T--GTG-T-AT-TAATAAAATTACAAGTAAA-TACGC-TGTA--AATA--TTCTTT--------------AC---AA-----TA--GAA-TG-TTTGCATGCAT-TTCA----TAAATGAAGATGTTATATATAA-TATAATT-TTTTG------TTT-AA-AACTATG-AA-C--AACATAA-TATT-TTATTTTAGATTTT----T-A-AC-ATT-ATTA-ATTT----TGTC------TT-A------C---TGT-------TAAAC-C-CCATACT-TG-TAAT-CCCAAGTAC---ATGAT-A-TTTTCTCCAATATGAA-GCACATTTCGTGTATTAT-ACCATTT-CTAA-A-AGC--ATTCACCTCCA--AAAATAGCGACCTGT-------CA----TAT-TGTA--CCTTTTTCAAGTCTCCAATGGA---GTC--------TC-----TTAATACAGG-TTG-ACTGTATGT---GCAAAGTA-AATTTTAA-----GTTTTAT-T---TACCTG-----TTCACCTGA-AGGAGATA
gi|20 : GCT-AAAGAAAC-CCGC-CTGTATG-AGTTCAAAACTG-TGT-ACA-ATG-AGTAT---CATGG----TG-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-Tt
gi|21 : atACCTGT-------CA----C---T-T----CTTTTCCCATTCTCCAATAGATA-GTCTATTATT-TA-----TTAGTACAAATTTG-ACTGTA
gi|22 : tgtattaagagaccCCTGT-------CA----C---T-T----CTTTTCCAATTCTCCAATAGATA-GTC------TATCATTTATTAGTACAAATTTG-ACT
gi|24 : tgtattaagagactgTTTTGCAA-C-C-AT-TT-CGTATA-T-T----TTCACGATA-TTTTACCTT-TATTCAG-CC---ACC-------A
gi|25 : atTTTTGCAA-C-T-GT-TT-CGTGTA-T-T----TTCATGATA
gi|3 : cacgaccaacgaccatgatTCTTGCAA-CTC-AT-TTGCGTGTA-T-T----TTCTTGATATT---ACCTTATAT-CAGTCG---ACC-------ATTA-TAT--TT--CGATT---CA-ACGCGATCC--TAC--TCCAT-TCGA--TTTCAA--GAACGT-G-GTTAATCTG-AAG-AG-TTA-TTCG-CCCT--ACCCTGTGACTGTTCGATCTT-GA-AC-CGC----ACGTGTAATA-----AG-TTTGATCGGTGTAATTC-GAAAAT-TGTG--G--A-ATTC--TAA---CT--AGGATT-T-T-AGCC--AA--T-T-AGTC-AAT--AAC-GAACAGG-T--AGTC----AGCGT----------------------------A---------AACCCAT-GT------GTTTGT-TTGT-------T--ACAAAATC--A--GGA-T---AT-GT-A-TT-GGA--AACAA-CGGCTT-TGT-ATT-CCA-A-GGT--G-TGGAATTTTCGAACTTG-A-GTTT-AGA-ATTGATAGG--GT-AGATACGGTGTAAAA-TCTGGT-A-----CGCAGTT-ATATTC-C-TA-AATG-GAA----TTA-AC-C-A-ACTGTT-GACT-GCCAAA--TAGG----ACTAAAG-CAGTGC-ATGGGA--T---GCTAAGTACTGTAGAAAACTGGA-TA-TTGCGA-CCTTTCTAAG-ACGAGATGTCCGGTACGTTTCTA-----ACGAA-TAA--TTTTA--A---AGTGTAGA----CATGACAGGACTAAG-AGTTTCAC-T-TCAAACATATTACGA-G-TCTGT---TTGAAGCAC-ATCC-A-CT-AAAGAAAG-CTG--CTGCATT-AGTTCAAAACTG-TGTAACACAGGAAATCC--GTGTGGTTTATTCTA-A-TGTCTT--TTATTGCAT-----TTGAAATAAATTCTCCAGCATT
gi|3 : att-T-ATGTAATAAAATTACAAGTATAGTACACGTGTACGAATT--GTCTT---------------ACGA-AA-----TC--ATA-TG-GTTGCA-GCATGTTCA----TAAAT-AAGAG--TGT-AA-AA-TATAA-C-TTTTG------TTATCA-AATTATGAGA-G--AAC-CAAATATC-TT----TAGATTTT----T-ACAC-ATT-ATAA-TTTT----TGTC------TTTC------C---TGT-------TAAACGC-CTATACT-TGATCAT-CGCAAGTAA---TTGATCATTTTTCTCC---ATTGACGGACATTTCGTGT-TTAT-AACATTTGCTGATACAGCTTTTTCACTCCAA--GAAAAGGCGACCTtatttttttttttttttttttttttttgtataaatggagaagcatactcttcaaatatctttctttcttatcactgagaggatatgtaataaaattacaagtatagtacacgtgtacgaattgtcttacgaaatcatatggttgcagcatgttcataaataagagtgtaaaatataacttttgttatcaaattatgagagaaccaaatatctttagatttttacacattataatttttgtctttcctgttaaacgcctatacttgatcatcgcaagtaattgatcatttttctccattgacggacatttcgtgtttataacatttgctgatacagctttttcactccaagaaaaggcgacct
gi|4 : atttcttgcaactcatttgcgtgtattttcttgatattaccttatatcagtcgaccattatatttcgattcaacgcgatcctactccattcgatttcaagaacgtggttaatctgaagagttattcgccctaccctgtgactgttcgatcttgaaccgcacgtgtaataagtttgatcggtgtaattcgaaaattgtggaattctaactaggattttagccaattagtcaataacgaacaggtagtcagcgtaaacccatgtgtttgtttgttacaaaatcaggatatgtattggaaacaacggctttgtattccaaggtgtggaattttcgaacttgagtttagaattgatagggtagatacggtgtaaaatctggtacgcagttatattcctaaatggaattaaccaactgttgactgccaaataggactaaagcagtgcatgggatgctaagtactgtagaaaactggatattgcgacctttctaagacgagatgtccggtacgtttctaacgaataattttaaagtgtagacatgacaggactaagagtttcacttcaaacatattacgagtctgtttgaagcacatccactaaagaaagctgctgcattagttcaaaactgtgtaacacaggaaatccgtgtggtttattctaatgtcttttattgcatttgaaataaattctccagcatttatttttttttttttttttttttttttgtataaatggagaagcatactcttcaaatatctttctttcttatcactgagagga------A-----AG-TTATGT-GGTG--ATTCTGAT--TCTGTT--G--GCAC-C--TACA-CTTC-GGGATT-T-TTACCC--AAAAT-T-A-TC-AATT-AACTGAACATAAT--AGTC----A-CGTGCAGG-G-TC--GTGGAA-CAT-CCGATA---------AATCT-CAGAAGTTCGGCT-GT-TTGT-------TAACCAAAATCTTAT-GGACT-C-AT-GT-A-AT-G-A--A-CAA-TG-CTT-TGTATAT-CTA-AAGGT--GGTGAA--TTCCGA--CTGTA-CTTTGAGA--TTG-TAGG--GTGAAAT--AGGGCGAAA-CCTGGTGATCACACCTA-TTGATATTCACCTACAATGTGAA-ATATTACACGCTGTGCTGTTTGACAAGCAAAGATTTAGCATCATTAAGAACTGTACTATG--AC-TAGGGATAAAA--C-TAGAAA-CTGGAT-AT--GTGATCCTTCCCTAATACGA-ATTCC--GTAAGTTTCCATCATTA-GAAAT-AAATTTTA--AGGAAG-GTAGAACCACATGACCTGAC-AGCTAG-TTCACATATC-AACATATTG-GA-GAT-TGATGATCGA--CAC-CACC-AGCTTAACGAAAA-CCGTTCTGCATTTAGTTACAAACTGCTGT-ACAGATGAAATATTAGT-TGGTTTATT-TATA-TGTCTTAATCAA-G-ATGAATATTG-AATAAATT-TCCAGCATTA-T---TG-TCAT-TAA
gi|4 : T--------------AC---AA-----TACGGAACTG-TTTGCA----------------AAT-AGCAGGTTAT-TA-AAATACGA-TATTTTT------TTATCA-AGCTATGAAAAC--AACACAATTATTATTATTTTAGATTTT----A-A-ACAATTAATTA-ATTT----TTTG------TT-A------CTCATGT-------TAAAC-CACCATACTGTGAT-ATACTCAAATATACAATGAT-ATTTTTCTCC---ATTGT-G-ACATTT-GT-TATTATAACCATTGCCT---A-AGC--TTTCACTTCCAATAAAATAGCGACCTTTAAGAGACCACTTCTATGC-TG--CCTTTTCAAAGGCTCC-ATGGACTGGTC------T-CC-----TTAATACAGGTTaaggagaagcaacacttcatactttcttttctatcaatgagaggctactggttataaagatacaacagtatcatacaatacggaactgtttgcaaatagcaggttattaaaatacgatatttttttatcaagctatgaaaacaacacaattattattattttagattttaaacaattaattaattttttgttactcatgttaaaccaccatactgtgatatactcaaatatacaatgatatttttctccattgtgacatttgttattataaccattgcctaagctttcacttccaataaaatagcgacctttaagagaccacttctatgctgccttttcaaaggctccatggactggtctccttaatacaggtt
gi|5 : aagttatgtggtgattctgattctgttggcacctacacttcgggatttttacccaaaattatcaattaactgaacataatagtcacgtgcagggtcgtggaacatccgataaatctcagaagttcggctgtttgttaaccaaaatcttatggactcatgtaatgaacaatgctttgtatatctaaaggtggtgaattccgactgtactttgagattgtagggtgaaatagggcgaaacctggtgatcacacctattgatattcacctacaatgtgaaatattacacgctgtgctgtttgacaagcaaagatttagcatcattaagaactgtactatgactagggataaaactagaaactggatatgtgatccttccctaatacgaattccgtaagtttccatcattagaaataaattttaaggaaggtagaaccacatgacctgacagctagttcacatatcaacatattggagattgatgatcgacaccaccagcttaacgaaaaccgttctgcatttagttacaaactgctgtacagatgaaatattagttggtttatttatatgtcttaatcaagatgaatattgaataaatttccagcattattgtcattaaaaggagaagcaacacttcatactttcttttctatcaatgagaggctactggttataaagatacaacagtatcaTTTTGCAA-A-C-AT-AT-TACG-A-T-TCGATTTCATGATATTATTAACTT-TATTCAG-TG---ACCCATTTCTAT-A-TGTAGTTTCCGATTA--CA---GGAGTCCTGTACGTT---C-TCCATGTTTCGATCGTGCGT-ATGTTAATCTGAA-G-AG-TTATT-CG-CCCTC-GA-----GA-TGTTCGTTTTT-GA-ATGCGCATGTATG------A-----AGTTTTGGT-G--G--ATTCTGAT--T-TGCTTGG--A-ACTCGGTAAC-TTC--AGGATTGTAT-ACCCCAAAA-TAT-A-TCAAATTAAAC-GAACATT-TGAAGTCGACAGGCGTGCAGGTG-TG--A-GGAAAAATTTCAATAATAATATATAA------GA------GTT-GT-TCGTTATATTGTTAATGAAACA--ATAGGA-TGC-ATAGT-AGATAG-ATTAACAATTGGCTT-AGT-TATACTAGA-GGT--G-TGAAATTTTCGA---TG-AGCATGGAGA-AATG-TAGG--G
gi|6 : atTTTTACAA-C-C-AT-TT-CATGTG-A-T----TTCATGATATATT-ACCTT-TATCTAA-CA---ACC-------AT-A-TAT--TTTTCGATTA--CC-ATACGATCCC-TAA--T---T-TTGA--TTTCGGTCGAGCTT-G-GCTAATTGG-A-G-AC-TTA-T-CG-TCCC--AA----AAACTTTT-G--TTT-AA-AC-TAC----ATG------GGTTATGG-TTCGTT-GGTG--ATTTTGTA--T-TGTT--GGCA-ACTG--TAA----TGGAGGATT-T-T-ATCC--TAC-C-T-A-TC-AATT-gt
gi|7 : ataaaataatgcctatagatgaacacttagaaatacagtaaatctgctatagcggcccactgtattaagcaactcactgtatgaccgtaaaattccccttcccccctggcgttaccctatatattgcattaaacaaccacctgtctgacgcgactaacggccatgatTAGTTTATT-TA-A-TGTCTT--T---------------------AATT-TCCAGCATTA-T--
gi|7 : -TAATAAAATTACAAGTATA-TACACGTGTA--AATA--TTCTTT--------------AC---AA-----TA--GAATTT-TTTGCATGCAT-TTCA----TAAAT-AAGAGG---T-TA-GA-TATAA-T-TTTTG------TTA-TC-AATTATGAAA-C--AACAT-ATTA----TATCTTAGATTTT----TCA-AC-ATT-ATTA-ATTT----TGTC------TT-A------C---TGT-------TAAA--C-CCATAAT-TGAT-----CCAAATAC---ATTATCG-TTTTCTCC---ATTGA-GACCATTTtctataaaaagagaagcaactcttcattactttctttctatcatgagagttactgtaataaaattacaagtatatacacgtgtaaatattctttacaatagaattttttgcatgcatttcataaataagaggttagatataatttttgttatcaattatgaaacaacatattatatcttagatttttcaacattattaattttgtcttactgttaaacccataattgatccaaatacattatcgttttctccattgagaccattt
gi|8 : tagtttatttaatgtctttaatttccagcattattctataaaaagagaagcaactcttcattactttctttctatcatgagagttactgTTTGGCAA-C-CGATGTT-CGTG-A-T-T----TTC-TGAT--TTTTACCTT-TATTCAG-CGA--ACC-------AT-ACTAT--TTTCCGATTAAGCACACGCGATCCC-TAC--T---T-TATGATTTTCGATTGAGCGTGG-GTTAATCT----G-AG-TTA-T-CG--CCT--AAT---TGAC-TTTCG--TTG-AA-AC
gi|9 : atagtacagtcaaaactgcaatatgcgacctactgtattaagcgactcactgtcacaggtgtgaccataaacattccccccaaagcgttaccctatatttacctgtattaaacgacactgtctgacgcgaccacgaccatgataG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ATGCGATCCC-TAT--T---T-TC-A--TTTCGATTGAGTGT-G-GTTAATCTG-A-G-AG-TTA-T-CG-CCCCTAAATA--TAACTTT-CG--TTTTGA-ACGCGC----ACGTAAT--A-----AG-TTTTAT-GGTG--ATTCTGAT--T-TGTT--G--GCATTC--TAAA-CTT--AGGATT-T-T-ACCC--AAA-T-T-A-TC-AAGT-AAG-GAACATG-T--AGTC----AGCGTGCAGG-GTTGT-GTGGAGTCA-TCTGATA---------AACCC-T-GAGTT---GTT-GT-TTGT-------TTAACAAAATC--TT-GG--T-C-AT-GT-A-TT-G-A--AACAA-TGGCTT-TGT-TAT-CC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TACAGTTTAGACTGCAATTGTGCACAAACCCACTGTATAAGCAAGTCACTGTTATATGTGACCATGAAAATTCCCTGCAAGGCATTACCCTATGTGTTGTACCTGTATTAAATGATCACCAGTCTGATGTGACCAAG
Unaligned ( gi|14 ): TGATAAACTAATGTAGATCTTATCAAGTACAGTCAAAACTGCCATAGCGACCCACTGTATTAAGCGACTCACTGTCATATTTTACCTGTTTTAAACAACCACCTGTCTGACGCGACCAA
Unaligned ( gi|23 ): ACATAAAAATAAGACAATGCAACATTTAAAGTACAGTCAAAACTGCCATAGCGACCCA
Unaligned ( gi|26 ): TACAGTCAAAACTGCCGTAGCAACCCACTGTATTAAGCGACTCACTG
Alignments
lowQualScore : 111 1111111 11 11 333333 11 1 1111 333333333333 1111 2222222 11111 1111 4444444444444444444444444444444444444444444444444 222222222 11111 111 222222222 11 11 22 111 11 11111 22 11 22222 111 111 111 11 111 1111 11 111 1 1 111 1 11 2 2222222 222222 555555555555555555 222222 222222 1 111 3333 11 1 1 11 1 1 222 11111 22222 1 11 11 4444444444444444444 11111 1111 1 1 1111 2 1 111 111111 1111 1111 222222 1111 22222222222222222222 2222222 11 11111 111 222 111 1 11111 11 11 55555555555555555555555 222 444444444444444 44444 111 111 22222 22222 1
lowQualScore : 4 4 4 8 4 0 4 4 8888 4 2 8 4 4 000 1111111 4 4 55 55 4 4 66 777 4 2 22 555 4 4 4 4 4 4 8 00 555555 3 33 5 5 0 1 4444 999999999999 5 6666 0 77 888 5 999 8888 77 6666666 5 999 77 77 5 5 5 5 5 77 22222 4444 0000000000000000000000000000000000000000000000000 6 6 444444444 22222 6 111 6 6 111111111 3 6 6 00 6 8 8 11 8 55 444 8 33 88 8 55555 0 77 33 2 55555 8 8 8 5 5 8 666 8 8 222 999 99 5 444 7777 11 8 8 66 8 444 0 0 8 0 11 66 2 2 0 3 111 5 4 33 0 6666666 888888 555555555555555555 3 55 3 222222 666666 8 0 111 1111 33 0 0 8 8 11 0 8 6 6 3 5 1 444 1 5 5 5 77 1 5 44444 5 5 00000 6 6 5 0 999 0 11 11 1111111111111111111 66666 99 7777 1 3 4444 5 0 55 1 0 3 6 0 333 999999 8888 2222 3 3 6 1 555555 6 6 6 6 4444 99999999999999999999 6666666 33 8 8 0 99999 444 444 444 8 99 6 2 3 0 8 55555 33 1 33 00000000000000000000000 6 1 888 999999999999999 7 8 88888 666 444 0 77777 66666 1 5
lowQualScore : . . . . . . . . .... . . . . . ... ....... . . .. .. . . .. ... . . .. ... . . . . . . . .. ...... . .. . . . . .... ............ . .... . .. ... . ... .... .. ....... . ... .. .. . . . . . .. ..... .... ................................................. . . ......... ..... . ... . . ......... . . . .. . . . .. . .. ... . .. .. . ..... . .. .. . ..... . . . . . . ... . . ... ... .. . ... .... .. . . .. . ... . . . . .. .. . . . . ... . . .. . ....... ...... .................. . .. . ...... ...... . . ... .... .. . . . . .. . . . . . . . ... . . . . .. . . ..... . . ..... . . . . ... . .. .. ................... ..... .. .... . . .... . . .. . . . . . ... ...... .... .... . . . . ...... . . . . .... .................... ....... .. . . . ..... ... ... ... . .. . . . . . ..... .. . .. ....................... . . ... ............... . . ..... ... ... . ..... ..... . .
lowQualScore : 0 0 0 0 0 8 0 0 5555 9 0 1 0 0 000 8888888 0 0 55 55 0 4 11 888 4 9 22 222 4 4 4 4 4 4 9 66 444444 2 88 0 7 8 0 2222 777777777777 7 1111 7 99 444 7 333 0000 99 1111111 7 444 99 11 7 7 7 7 7 77 00000 2222 3333333333333333333333333333333333333333333333333 7 7 333333333 88888 7 777 7 7 222222222 2 7 7 22 7 0 0 00 0 88 222 0 00 88 0 22222 2 55 22 5 00000 0 0 0 0 6 0 888 0 0 000 444 00 6 888 0000 22 0 0 44 0 000 6 8 0 8 66 88 5 5 0 2 888 0 5 88 0 0000000 000000 000000000000000000 5 00 2 222222 555555 8 0 000 2222 88 0 0 0 0 22 8 0 7 7 3 5 7 222 0 7 7 7 99 4 7 33333 7 0 88888 7 7 7 8 888 0 00 00 0000000000000000000 77777 22 5555 7 3 2222 7 1 77 5 0 3 7 3 555 222222 5555 7777 5 5 7 7 333333 7 7 7 7 2222 00000000000000000000 0000000 00 0 0 8 66666 000 444 000 0 44 5 5 2 0 8 00000 88 0 88 22222222222222222222222 7 7 222 888888888888888 3 0 77777 777 000 7 55555 55555 0 5
consensus : TTTTGCAA-C-C-AT-TT-CGTGTA-T-T----TTCATGATATTTTTACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ACGCGATCCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-G-GTTAATCTG-A-G-AG-TTA-T-CG-CCCT--AAT---TNACTTTTCG--TTT-GA-ACGCGC----ACG------A-----AG-TTTGGT-GGTG--ATTCTGAT--T-TGTT--G--A-ACTC--TAAA-CTT--AGGATT-T-T-ACCC--AAA-T-T-A-TC-AATT-AAC-GAACATG-T--AGTC----AGCGTGCAGG-G-TG--GTGGAGTCATTCCGATA---------AACCC-C-GA------GTT-GT-TTGT-------TTAACAAAATC--AT-GGA-T-C-AT-GT-A-AT-G-A--AACAA-TGGCTT-TGT-TAT-CCA-A-GGT--G-TGAAATTTTCGA--CTG-A-CTTTGAGA-ATTG-TAGG--GT-AGAT--GGTGTGAAA-CCTGGTGA-----CCCA-TT-ATATTC-CCTACAATG-GAA-A-ATTA-AC-CTG-GCTGTT-GAC--GCAAAA--TTAG----ATTAAGA-CTGTGC-ATGGGAC-T---GATAAAAACT-TAGAAAACTGGATTATTTGCGA-CCTTTCCTAA-ACGAGATNTC--GTA-GTTTCCA-----A-GAA-T-A--TTTTA--AN--AGTGTAGA----CATGACCGGACTAGC-AG-TTCAC-T-TC-AACATATTACGA-G-T-TG----TTGA--CAC-ATCC-AGCT-AAAGAAAG-CCGC-CTGCATT-AGTTCAAAACTG-TGT-ACA-ATGAAATAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTA-T--GTG-T-AT-TAATAAAATTACAAGTATA-TACACGTGTA--AATA--TTCTTT--------------AC---AA-----TA--GAA-TG-TTTGCATGCAT-TTCA----TAAAT-AAGAGGTTAT-TA-AA-TATAA-T-TTTTG------TTA-CA-AACTATGAAA-C--AACATAATTATT-TTATTTTAGATTTT----T-A-AC-ATT-ATTA-ATTT----TGTC------TT-A------C---TGT-------TAAAC-C-CCATACT-TGATCAT-CCCAAATAC---ATGATCATTTTTCTCC---ATTGA-GNACATTTCGTGTATTAT-ACCATTTGCTAA-A-AGC--TTTCACTCCNA--AAAATAGCGACCTGT-------CA----TAT-T-TG--CCTTTTCCAAGTCTCCAATGGATAGGTC------T-TC-----TTAATACAGGTTTG-ACTGTATGT---G-AAAGTA-AATTTTAAGCCACGTTTCATGTAAATACCTGCAGAATCCACNTGATAGGAGGTA
Reference ( family-28 ) : TTTTGCAA-C-C-AT-TT-CGTGTA-T-T----TTCATGATATTTTTACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ACGCGATCCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-G-GTTAATCTG-A-G-AG-TTA-T-CG-CCCT--AAT---TNACTTTTCG--TTT-GA-ACGCGC----ACG------A-----AG-TTTGGT-GGTG--ATTCTGAT--T-TGTT--G--A-ACTC--TAAA-CTT--AGGATT-T-T-ACCC--AAA-T-T-A-TC-AATT-AAC-GAACATG-T--AGTC----AGCGTGCAGG-G-TG--GTGGAGTCATTCCGATA---------AACCC-C-GA------GTT-GT-TTGT-------TTAACAAAATC--AT-GGA-T-C-AT-GT-A-AT-G-A--AACAA-TGGCTT-TGT-TAT-CCA-A-GGT--G-TGAAATTTTCGA--CTG-A-CTTTGAGA-ATTG-TAGG--GT-AGAT--GGTGTGAAA-CCTGGTGA-----CCCA-TT-ATATTC-CCTACAATG-GAA-A-ATTA-AC-CTG-GCTGTT-GAC--GCAAAA--TTAG----ATTAAGA-CTGTGC-ATGGGAC-T---GATAAAAACT-TAGAAAACTGGATTATTTGCGA-CCTTTCCTAA-ACGAGATNTC--GTA-GTTTCCA-----A-GAA-T-A--TTTTA--AN--AGTGTAGA----CATGACCGGACTAGC-AG-TTCAC-T-TC-AACATATTACGA-G-T-TG----TTGA--CAC-ATCC-AGCT-AAAGAAAG-CCGC-CTGCATT-AGTTCAAAACTG-TGT-ACA-ATGAAATAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTA-T--GTG-T-AT-TAATAAAATTACAAGTATA-TACACGTGTA--AATA--TTCTTT--------------AC---AA-----TA--GAA-TG-TTTGCATGCAT-TTCA----TAAAT-AAGAGGTTAT-TA-AA-TATAA-T-TTTTG------TTA-CA-AACTATGAAA-C--AACATAATTATT-TTATTTTAGATTTT----T-A-AC-ATT-ATTA-ATTT----TGTC------TT-A------C---TGT-------TAAAC-C-CCATACT-TGATCAT-CCCAAATAC---ATGATCATTTTTCTCC---ATTGA-GNACATTTCGTGTATTAT-ACCATTTGCTAA-A-AGC--TTTCACTCCNA--AAAATAGCGACCTGT-------CA----TAT-T-TG--CCTTTTCCAAGTCTCCAATGGATAGGTC------T-TC-----TTAATACAGGTTTG-ACTGTATGT---G-AAAGTA-AATTTTAAGCCACGTTTCATGTAAATACCTGCAGAATCCACNTGATAGGAGGTA
gi|1 : TTTTGCAAAC-C-ACCTT-CATGTAGTAT----TTCGTCATATATT-ACCTT--ATTCAG------ACC-------AT-A-TAT--TTTTCAATTA--CA-CC----TCCC-TAC--T---TATCCA--TT-CGATCG-GC------TTTATCTG-A-GCAGATTA-T-CC-CCCT--AA-----CACTTTCAT--TTT-GA-ACCC-C----ACA------T-----AA-TTT----------AATCTATC--T-TGT---G--C-ATTC--TAAA--TC--AGGGAT-T-T-ACCC--AAA-T-T-A-TC-AATT-A---GAAAAT--T--AGTC----AGC-TGCAGA---TGACGTGGAGTCAT-CCAATA---------AACCC-C-GC------ATT-GTGTTGT-------T-AACCAAATC--AC-GTA-T-CCAT-GT-A----------------GGCTT-TGT--AT-CCA-A-GCTTAG-TGAA--TTTCGA--CTG-A--TTTGAGACATTA-TAGGTTAT-ACAT--AGTGTGAAAACCTCGTGA-----CCCA-TT-ATATTC-CCTACACTG-GAACA-AATA-AC-CT--GCTG-T-GAA--GC-AAA--TTAG----AT--AAA-CTGGAC-AT-GTACAT---GAT-AAAACT-TAGAAAACT-GATTATAT-C-A-CC-TTCCT-A-ACAA----TC--GTA-AGTTTCA-----A-GAA---A--ATTTA--AA--AG--------------------CTA--------CAC---------ATATTAAGA-G-T-TG----TTTA--CAC-ATCCAAGCT-AAAGAAAG-CTGC-CTTCATT-AGTTCAAAACTG-TGT-ACT-TTG-AATAT---TGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-CCCAGCATTA-T---TG-T-AT-AAATGGAG----AAGCA----ACAC-T-TC--ATTACTTTCTTTCTATCATGAGAGGCACATTAA-----TA--AAA-----TTACAAGTATATACAATTGTAAAT-A-----TTCTTTACAA-TAAAA-TGTTTTGCATGCATTA-CATAAATAAGAGG-TTAAATATAAT--TT-TTGTTATCAATTTTGAAAC-A-AC-A-T-ATTATATTTTAGATGTTTAAACATT-ATTAATTT---TGTCTTACTGTAAAA-C-CCATACT-TGATCAT--CCAAATAC---ATGATCA-TTTTCTCC---ATTGA-GCCCATTTTGTGTATTAT-GCCATTTGCTAA-A-CGC--TTTCACTCCAA--AAAATAG
gi|10 : tgaaatactatgacacagaatgcacattcagaactgctacagtcaaaactgccatagcgacccacctgtgtaacacccactcacatgttgaccataaacaaattcccccaacgtaccctataactattactaattatacgacactgtactgaccgcgacaacgaccatgatG-TGT-ACA-ATGAA-TAT---TGTGGTTTATT-TA-AGTGTCTT--TCAATG-AT-----TTG-AGTAAATT-TTCAGCATTATT--GTA-T-AT-T-ATAAgcaac
gi|10 : TT-TCTATCATGA-GAGGTGCT-GT-TA-TAAAATTACAAGTATA-TATATGTGTA--AATA--TTCTTT--------------AC---AATACGGTA--GAA-TGTTTTGCATGCAT-TTCA----TAAAT-AAggagaagcaacacttcattactttctttctatcatgagaggtgctgttataaaattacaagtatatatatgtgtaaatattctttacaatacggtagaatgttttgcatgcatttcataaataa
gi|11 : gtgtacaatgaatattgtggtttatttaagtgtctttcaatgatttgagtaaattttcagcattattgtatattataaggagaagcaacacttcattactttcACCTGT-------CA----TAT-G-TGACCTTTTTTCAAGTCTCTGATGGA-AGGTC------T--C-----TTAATACAGGTTTG-ACTGTATTTTAAA-AAAGTA-G-TGTTAAACCACATTTCATGTAAATACCTGCAGAATCCACATGATAGAAGGTA
gi|12 : tgtattaagagaccTTTTGCAA-C-C-AT-TT-CGTGTA-T-T----TTCATGATATTTT-ACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ACGCGATTCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-A-TTTAATCTG-A-G-AG-TTA-T-CGCCCCT--AA-----CAC-TTTCG--TTT-
gi|15 : gatTTTTACAA-C-C-AT-TT-CGTGTA-G-T----TTCATGAAAATTTT--CCT-TATTTAA-CAATTACC-------GC-A-TAT--TTTTGTATTA--CA-ACt
gi|16 : tgatgcaaccaacgaacaggatTTTTACCTT-TATTCAG-TG---ACC-------AT-A-TAT--TTTACGATTA--CA-ACGCGATCCC-TAC--T---T-TCCA--TTGCGATTGAGCGT-G-GTTAATCTG-A-G-AG-TTA-C-CACCCCT--AAatattcc
gi|17 : AAT-AAGAGGTTATATA-AA-TACAA-T-TCTTG------TTA-TC-AACTATGAAA-C--AACTTAATTATT-ATATTTTAAATTTT----TAA-AC-ATT-ATTA-ATTT----TGTC------TT-A------T---Tc
gi|18 : c-TT-ATATTC-CCTACAATG-GAA-A-ATTT-AC-CTG-GCTGT--GAT--GCAAA---TTAG----ATTAAGA-CTGTGC-ATGAGAC-T---GAT-AAAACT-TAGAAAACTGGATTATT
gi|19 : CTGT-------CA----TAG-TGTG--CCTTTTTCAA-TCTCCAATGGA-AGGTC------T--------CTAATACAGG--TGAACTGTATGT---------TATAATTATAAGCTACATT
gi|2 : taagatgaccaTTTTGCAA-C-C-AT-TT--GTGTA-T-T----TTC--GATATTTTTACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGAT-A--CA-ACGCGATTCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-G-GTTAACCTG-A-G-AG-TTA-T-CG-CCCT--AAT---TCACTTTTCG--ATT-GACATGCGC----AGA------A-----AA-GTTGGT-GGTG--ATTCTGAT--T-TGTT--G--A-ACTC--TAAAACTT--AGGATT-T---ACCC--AAA-T-TTA-TC-AATT-AAT-GAACAGG-T--AGTC----AGCGTGCAGG-T-CG--GTGGAGTCATTCCGATA---------AATCC-C-GA------GTT--T-TTGT-------TTAACAAAATC--AT-GAA-T-C-AT-GTCA-AT-G-A--AACAA-TGGCTTGTGT-TAT-CCG-A-GGT--G-TGAA--TTTCGA--CTG-A-CTTTGAGA-ATTG-TAGG---T-AGATTAGGTGTGAA--CCTGGTGA-----CCCA-TT-ATTATC-CATACA-TG-GAA-A-ATTA-AC-CTG-ACTGT--GAC--GCAAAA--TTAG----AT--AGA-CTGTGC-ATAGGAC-T---GATAAAAACT-TAGAAAACTGGATTATTTGCGA-CCTTTCCTGA-ACGAGATATC--GTA-GTTTTCA-----A-GAA-T-A--TTTTAATAT--AGTGT-------CTTGACCGGACTAGC-AG-TTCAC-T-TC-AACATATTACGATG-T-TG----TTGA--CACAATCC-AGCT-AAAGAAAGCCCGC-C-GCATT-AGTTCAAAACTG-TAT-A-A-ATG-AATAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTA-T--GTG-T-AT-TAATAAAATTACAAGTAAA-TACGC-TGTA--AATA--TTCTTT--------------AC---AA-----TA--GAA-TG-TTTGCATGCAT-TTCA----TAAATGAAGATGTTATATATAA-TATAATT-TTTTG------TTT-AA-AACTATG-AA-C--AACATAA-TATT-TTATTTTAGATTTT----T-A-AC-ATT-ATTA-ATTT----TGTC------TT-A------C---TGT-------TAAAC-C-CCATACT-TG-TAAT-CCCAAGTAC---ATGAT-A-TTTTCTCCAATATGAA-GCACATTTCGTGTATTAT-ACCATTT-CTAA-A-AGC--ATTCACCTCCA--AAAATAGCGACCTGT-------CA----TAT-TGTA--CCTTTTTCAAGTCTCCAATGGA---GTC--------TC-----TTAATACAGG-TTG-ACTGTATGT---GCAAAGTA-AATTTTAA-----GTTTTAT-T---TACCTG-----TTCACCTGA-AGGAGATA
gi|20 : GCT-AAAGAAAC-CCGC-CTGTATG-AGTTCAAAACTG-TGT-ACA-ATG-AGTAT---CATGG----TG-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-Tt
gi|21 : atACCTGT-------CA----C---T-T----CTTTTCCCATTCTCCAATAGATA-GTCTATTATT-TA-----TTAGTACAAATTTG-ACTGTA
gi|22 : tgtattaagagaccCCTGT-------CA----C---T-T----CTTTTCCAATTCTCCAATAGATA-GTC------TATCATTTATTAGTACAAATTTG-ACT
gi|24 : tgtattaagagactgTTTTGCAA-C-C-AT-TT-CGTATA-T-T----TTCACGATA-TTTTACCTT-TATTCAG-CC---ACC-------A
gi|25 : atTTTTGCAA-C-T-GT-TT-CGTGTA-T-T----TTCATGATA
gi|3 : cacgaccaacgaccatgatTCTTGCAA-CTC-AT-TTGCGTGTA-T-T----TTCTTGATATT---ACCTTATAT-CAGTCG---ACC-------ATTA-TAT--TT--CGATT---CA-ACGCGATCC--TAC--TCCAT-TCGA--TTTCAA--GAACGT-G-GTTAATCTG-AAG-AG-TTA-TTCG-CCCT--ACCCTGTGACTGTTCGATCTT-GA-AC-CGC----ACGTGTAATA-----AG-TTTGATCGGTGTAATTC-GAAAAT-TGTG--G--A-ATTC--TAA---CT--AGGATT-T-T-AGCC--AA--T-T-AGTC-AAT--AAC-GAACAGG-T--AGTC----AGCGT----------------------------A---------AACCCAT-GT------GTTTGT-TTGT-------T--ACAAAATC--A--GGA-T---AT-GT-A-TT-GGA--AACAA-CGGCTT-TGT-ATT-CCA-A-GGT--G-TGGAATTTTCGAACTTG-A-GTTT-AGA-ATTGATAGG--GT-AGATACGGTGTAAAA-TCTGGT-A-----CGCAGTT-ATATTC-C-TA-AATG-GAA----TTA-AC-C-A-ACTGTT-GACT-GCCAAA--TAGG----ACTAAAG-CAGTGC-ATGGGA--T---GCTAAGTACTGTAGAAAACTGGA-TA-TTGCGA-CCTTTCTAAG-ACGAGATGTCCGGTACGTTTCTA-----ACGAA-TAA--TTTTA--A---AGTGTAGA----CATGACAGGACTAAG-AGTTTCAC-T-TCAAACATATTACGA-G-TCTGT---TTGAAGCAC-ATCC-A-CT-AAAGAAAG-CTG--CTGCATT-AGTTCAAAACTG-TGTAACACAGGAAATCC--GTGTGGTTTATTCTA-A-TGTCTT--TTATTGCAT-----TTGAAATAAATTCTCCAGCATT
gi|3 : att-T-ATGTAATAAAATTACAAGTATAGTACACGTGTACGAATT--GTCTT---------------ACGA-AA-----TC--ATA-TG-GTTGCA-GCATGTTCA----TAAAT-AAGAG--TGT-AA-AA-TATAA-C-TTTTG------TTATCA-AATTATGAGA-G--AAC-CAAATATC-TT----TAGATTTT----T-ACAC-ATT-ATAA-TTTT----TGTC------TTTC------C---TGT-------TAAACGC-CTATACT-TGATCAT-CGCAAGTAA---TTGATCATTTTTCTCC---ATTGACGGACATTTCGTGT-TTAT-AACATTTGCTGATACAGCTTTTTCACTCCAA--GAAAAGGCGACCTtatttttttttttttttttttttttttgtataaatggagaagcatactcttcaaatatctttctttcttatcactgagaggatatgtaataaaattacaagtatagtacacgtgtacgaattgtcttacgaaatcatatggttgcagcatgttcataaataagagtgtaaaatataacttttgttatcaaattatgagagaaccaaatatctttagatttttacacattataatttttgtctttcctgttaaacgcctatacttgatcatcgcaagtaattgatcatttttctccattgacggacatttcgtgtttataacatttgctgatacagctttttcactccaagaaaaggcgacct
gi|4 : atttcttgcaactcatttgcgtgtattttcttgatattaccttatatcagtcgaccattatatttcgattcaacgcgatcctactccattcgatttcaagaacgtggttaatctgaagagttattcgccctaccctgtgactgttcgatcttgaaccgcacgtgtaataagtttgatcggtgtaattcgaaaattgtggaattctaactaggattttagccaattagtcaataacgaacaggtagtcagcgtaaacccatgtgtttgtttgttacaaaatcaggatatgtattggaaacaacggctttgtattccaaggtgtggaattttcgaacttgagtttagaattgatagggtagatacggtgtaaaatctggtacgcagttatattcctaaatggaattaaccaactgttgactgccaaataggactaaagcagtgcatgggatgctaagtactgtagaaaactggatattgcgacctttctaagacgagatgtccggtacgtttctaacgaataattttaaagtgtagacatgacaggactaagagtttcacttcaaacatattacgagtctgtttgaagcacatccactaaagaaagctgctgcattagttcaaaactgtgtaacacaggaaatccgtgtggtttattctaatgtcttttattgcatttgaaataaattctccagcatttatttttttttttttttttttttttttgtataaatggagaagcatactcttcaaatatctttctttcttatcactgagagga------A-----AG-TTATGT-GGTG--ATTCTGAT--TCTGTT--G--GCAC-C--TACA-CTTC-GGGATT-T-TTACCC--AAAAT-T-A-TC-AATT-AACTGAACATAAT--AGTC----A-CGTGCAGG-G-TC--GTGGAA-CAT-CCGATA---------AATCT-CAGAAGTTCGGCT-GT-TTGT-------TAACCAAAATCTTAT-GGACT-C-AT-GT-A-AT-G-A--A-CAA-TG-CTT-TGTATAT-CTA-AAGGT--GGTGAA--TTCCGA--CTGTA-CTTTGAGA--TTG-TAGG--GTGAAAT--AGGGCGAAA-CCTGGTGATCACACCTA-TTGATATTCACCTACAATGTGAA-ATATTACACGCTGTGCTGTTTGACAAGCAAAGATTTAGCATCATTAAGAACTGTACTATG--AC-TAGGGATAAAA--C-TAGAAA-CTGGAT-AT--GTGATCCTTCCCTAATACGA-ATTCC--GTAAGTTTCCATCATTA-GAAAT-AAATTTTA--AGGAAG-GTAGAACCACATGACCTGAC-AGCTAG-TTCACATATC-AACATATTG-GA-GAT-TGATGATCGA--CAC-CACC-AGCTTAACGAAAA-CCGTTCTGCATTTAGTTACAAACTGCTGT-ACAGATGAAATATTAGT-TGGTTTATT-TATA-TGTCTTAATCAA-G-ATGAATATTG-AATAAATT-TCCAGCATTA-T---TG-TCAT-TAA
gi|4 : T--------------AC---AA-----TACGGAACTG-TTTGCA----------------AAT-AGCAGGTTAT-TA-AAATACGA-TATTTTT------TTATCA-AGCTATGAAAAC--AACACAATTATTATTATTTTAGATTTT----A-A-ACAATTAATTA-ATTT----TTTG------TT-A------CTCATGT-------TAAAC-CACCATACTGTGAT-ATACTCAAATATACAATGAT-ATTTTTCTCC---ATTGT-G-ACATTT-GT-TATTATAACCATTGCCT---A-AGC--TTTCACTTCCAATAAAATAGCGACCTTTAAGAGACCACTTCTATGC-TG--CCTTTTCAAAGGCTCC-ATGGACTGGTC------T-CC-----TTAATACAGGTTaaggagaagcaacacttcatactttcttttctatcaatgagaggctactggttataaagatacaacagtatcatacaatacggaactgtttgcaaatagcaggttattaaaatacgatatttttttatcaagctatgaaaacaacacaattattattattttagattttaaacaattaattaattttttgttactcatgttaaaccaccatactgtgatatactcaaatatacaatgatatttttctccattgtgacatttgttattataaccattgcctaagctttcacttccaataaaatagcgacctttaagagaccacttctatgctgccttttcaaaggctccatggactggtctccttaatacaggtt
gi|5 : aagttatgtggtgattctgattctgttggcacctacacttcgggatttttacccaaaattatcaattaactgaacataatagtcacgtgcagggtcgtggaacatccgataaatctcagaagttcggctgtttgttaaccaaaatcttatggactcatgtaatgaacaatgctttgtatatctaaaggtggtgaattccgactgtactttgagattgtagggtgaaatagggcgaaacctggtgatcacacctattgatattcacctacaatgtgaaatattacacgctgtgctgtttgacaagcaaagatttagcatcattaagaactgtactatgactagggataaaactagaaactggatatgtgatccttccctaatacgaattccgtaagtttccatcattagaaataaattttaaggaaggtagaaccacatgacctgacagctagttcacatatcaacatattggagattgatgatcgacaccaccagcttaacgaaaaccgttctgcatttagttacaaactgctgtacagatgaaatattagttggtttatttatatgtcttaatcaagatgaatattgaataaatttccagcattattgtcattaaaaggagaagcaacacttcatactttcttttctatcaatgagaggctactggttataaagatacaacagtatcaTTTTGCAA-A-C-AT-AT-TACG-A-T-TCGATTTCATGATATTATTAACTT-TATTCAG-TG---ACCCATTTCTAT-A-TGTAGTTTCCGATTA--CA---GGAGTCCTGTACGTT---C-TCCATGTTTCGATCGTGCGT-ATGTTAATCTGAA-G-AG-TTATT-CG-CCCTC-GA-----GA-TGTTCGTTTTT-GA-ATGCGCATGTATG------A-----AGTTTTGGT-G--G--ATTCTGAT--T-TGCTTGG--A-ACTCGGTAAC-TTC--AGGATTGTAT-ACCCCAAAA-TAT-A-TCAAATTAAAC-GAACATT-TGAAGTCGACAGGCGTGCAGGTG-TG--A-GGAAAAATTTCAATAATAATATATAA------GA------GTT-GT-TCGTTATATTGTTAATGAAACA--ATAGGA-TGC-ATAGT-AGATAG-ATTAACAATTGGCTT-AGT-TATACTAGA-GGT--G-TGAAATTTTCGA---TG-AGCATGGAGA-AATG-TAGG--G
gi|6 : atTTTTACAA-C-C-AT-TT-CATGTG-A-T----TTCATGATATATT-ACCTT-TATCTAA-CA---ACC-------AT-A-TAT--TTTTCGATTA--CC-ATACGATCCC-TAA--T---T-TTGA--TTTCGGTCGAGCTT-G-GCTAATTGG-A-G-AC-TTA-T-CG-TCCC--AA----AAACTTTT-G--TTT-AA-AC-TAC----ATG------GGTTATGG-TTCGTT-GGTG--ATTTTGTA--T-TGTT--GGCA-ACTG--TAA----TGGAGGATT-T-T-ATCC--TAC-C-T-A-TC-AATT-gt
gi|7 : ataaaataatgcctatagatgaacacttagaaatacagtaaatctgctatagcggcccactgtattaagcaactcactgtatgaccgtaaaattccccttcccccctggcgttaccctatatattgcattaaacaaccacctgtctgacgcgactaacggccatgatTAGTTTATT-TA-A-TGTCTT--T---------------------AATT-TCCAGCATTA-T--
gi|7 : -TAATAAAATTACAAGTATA-TACACGTGTA--AATA--TTCTTT--------------AC---AA-----TA--GAATTT-TTTGCATGCAT-TTCA----TAAAT-AAGAGG---T-TA-GA-TATAA-T-TTTTG------TTA-TC-AATTATGAAA-C--AACAT-ATTA----TATCTTAGATTTT----TCA-AC-ATT-ATTA-ATTT----TGTC------TT-A------C---TGT-------TAAA--C-CCATAAT-TGAT-----CCAAATAC---ATTATCG-TTTTCTCC---ATTGA-GACCATTTtctataaaaagagaagcaactcttcattactttctttctatcatgagagttactgtaataaaattacaagtatatacacgtgtaaatattctttacaatagaattttttgcatgcatttcataaataagaggttagatataatttttgttatcaattatgaaacaacatattatatcttagatttttcaacattattaattttgtcttactgttaaacccataattgatccaaatacattatcgttttctccattgagaccattt
gi|8 : tagtttatttaatgtctttaatttccagcattattctataaaaagagaagcaactcttcattactttctttctatcatgagagttactgTTTGGCAA-C-CGATGTT-CGTG-A-T-T----TTC-TGAT--TTTTACCTT-TATTCAG-CGA--ACC-------AT-ACTAT--TTTCCGATTAAGCACACGCGATCCC-TAC--T---T-TATGATTTTCGATTGAGCGTGG-GTTAATCT----G-AG-TTA-T-CG--CCT--AAT---TGAC-TTTCG--TTG-AA-AC
gi|9 : atagtacagtcaaaactgcaatatgcgacctactgtattaagcgactcactgtcacaggtgtgaccataaacattccccccaaagcgttaccctatatttacctgtattaaacgacactgtctgacgcgaccacgaccatgataG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ATGCGATCCC-TAT--T---T-TC-A--TTTCGATTGAGTGT-G-GTTAATCTG-A-G-AG-TTA-T-CG-CCCCTAAATA--TAACTTT-CG--TTTTGA-ACGCGC----ACGTAAT--A-----AG-TTTTAT-GGTG--ATTCTGAT--T-TGTT--G--GCATTC--TAAA-CTT--AGGATT-T-T-ACCC--AAA-T-T-A-TC-AAGT-AAG-GAACATG-T--AGTC----AGCGTGCAGG-GTTGT-GTGGAGTCA-TCTGATA---------AACCC-T-GAGTT---GTT-GT-TTGT-------TTAACAAAATC--TT-GG--T-C-AT-GT-A-TT-G-A--AACAA-TGGCTT-TGT-TAT-CC
blockSeqs : . T G G G . . CGAT A T T A T ATT CATTTCT T C AG AG C G GT CCA . C TG AT A A . . T T C TA CCTGTG T AT T C G G ATGT TGTAATA T GATC TA AAA C TTG GCA GG AACTT G TT CA AA A T G A A CT TTGA GACA GTCGTGGAACATCCGATAAATCTCAGAAGTTCG T . TATATTGTT TTAT C GC A C GATAGATT A T G AT A G A . G AT ACT T GC A A GTG TA A G TCACA G G A C A T AT C G TGT TTT AA A GAT CATC TA A T GA . AGG A G TT TT G G T T AAT G A CG C TCATTA ATAAA AGGAAGGTAGAACCA T CG T AGAGT ATATC C T TC ATGA AG A . T C TT T C A C A A TAG G C T G AA T C GAATA A C GAGG C C G TAG G CG . ACGA TACGG CG TGT T G . G GT A A T A TT . TCA AC T T A A TA C A A . . TTACTCA . CG A G AATC ACA CAT AAT C CA C G A A G GATAC TT C AT AAGAGACCACTTCTATGCTG G A CTG TATTATTTA T A GC TAA GCT T . C .
blockSeqs : . . . . . . . . A A T . . A . . . . . . . . . . C AT GG . . . . . . C C TATA T TT . . G G . GGTTAT . GGT . T . T GC . ACTTC . AT . A . . . . . T AAT . TGTGAGGAAAAATTTCAATAATAATATATAAGA . . TT ATA . C . . TTGGA A . . T . . . . . AT C . C A . GT AC A G . . . . A A . A . . TG TT T A A . TA . . AG . . A . TT TT G G . T GA G G . A AC TAA ATATAGTGT A AG T GCTAG TTCA C . AT T . . . . . C . . . G A G G G . . . . T . . . . TTG . . . TA G . . AC . . CTG T . . . GT A A . . TA . TCA C A A . A TC . . . . . TTTCC . C . . CATC . AT . . GA C G A . C AAA . A . CATAGTGTG T A AG TATCATTTA T . . AA .
blockSeqs : . . . . . . . . A T T . . . . . . . . . . . . . C . A . . . . . . . . TTC T . . . G G . TAATA . TGT . T . G GC . CTTC . T . A . . . . . C GT . GTTGTGTGGAGTCATCTGATAAACCCTGAGTT . . TA AT . C . . ATGA A . . A . . . . . . C . G A . T . . . . . . . C A . A . . TG T . C A . TA . . GG . . A . T T G G . T AG . T . . A TA AAGTGTAGA A CT . GCAG TTC . . T . . . . . . C . . . . A A G A . . . . T . . . . TG . . . AA G . . AC . . TTT T . . . GT G . . . T . TC C A T . A T . . . . . TTAT . C . . ATAC . CG . . AC . . . . . A . C . CATATTGTA T A TA TCC T .
blockSeqs : . . . . . . . . A T T . . . . . . . . . . . . . G . G . . . . . . . . TTG T . . . . A . A . GGT . T . T A . ACTT . T . C . . . . . C GT . TCGGTGGAGTCATTCCGATAAATCCCGA . . TT TT . C . . ATGA A . . T . . . . . . . . C . . . . . . . . . . . A T . A . . . . . G . . . . T T . . . . . . . . A . G . . . . T . . . . T . . . TA . . . AC . . TG . . . . G A . . . C . AA G A T . A T . . . . . TTAC . . . . . . A . . A CACTT G A TA TC . .
blockSeqs : . . . . . . . . T T T . . . . . . . . . . . . . C . G . . . . . . . . AA T . . . . G . A . GTT . A . T A . TGG . T . A . . . . . G GT . AAACCCATGT . . T A . . . . TTGA . . . T . . . . . . . . . . . . . . . . . . . . AC . . TG . . . . . . . . . T . TC C . . . . A . . . . . TTAC CACTT . . . T .
blockSeqs : . . . . . . . . A T T . . . . . . . . . . . . . G . G . . . . . . . . C . . . . A . TAT . T . T A . CT . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . A . . . . . . . . . . . . . . . T . G . . . . . . . . G . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : G** CTG*** GGT* T** ACTT*** C* GT*** TCGTGGGAATCATCCGATAAATCCCGAGT******************** TT******* C** ATGA***** T* ** C* A* A** TG* TA GG T* T* TG*** TA* ** AC***************** TTT* **** GT T** ****** TC** C*** T***** **** TTAC**************** ******* AATC* CACATGTN*************** TCC************
originalCons : TTTTGCAA-C-C-AT-TT-CGTGTA-T-T----TTCATGATATTTTTACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ACGCGATCCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-G-GTTAATCTG-A-G-AG-TTA-T-CG-CCCT--AAT---TNACTTTTCG--TTT-GA-ACGCGC----ACG------A-----AG-TTTGGT-GGTG--ATTCTGAT--T-TGTT--G--A-ACTC--TAAA-CTT--AGGATT-T-T-ACCC--AAA-T-T-A-TC-AATT-AAC-GAACATG-T--AGTC----AGCGTGCAGG-G-TG--GTGGAGTCATTCCGATA---------AACCC-C-GA------GTT-GT-TTGT-------TTAACAAAATC--AT-GGA-T-C-AT-GT-A-AT-G-A--AACAA-TGGCTT-TGT-TAT-CCA-A-GGT--G-TGAAATTTTCGA--CTG-A-CTTTGAGA-ATTG-TAGG--GT-AGAT--GGTGTGAAA-CCTGGTGA-----CCCA-TT-ATATTC-CCTACAATG-GAA-A-ATTA-AC-CTG-GCTGTT-GAC--GCAAAA--TTAG----ATTAAGA-CTGTGC-ATGGGAC-T---GATAAAAACT-TAGAAAACTGGATTATTTGCGA-CCTTTCCTAA-ACGAGATNTC--GTA-GTTTCCA-----A-GAA-T-A--TTTTA--AN--AGTGTAGA----CATGACCGGACTAGC-AG-TTCAC-T-TC-AACATATTACGA-G-T-TG----TTGA--CAC-ATCC-AGCT-AAAGAAAG-CCGC-CTGCATT-AGTTCAAAACTG-TGT-ACA-ATGAAATAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTA-T--GTG-T-AT-TAATAAAATTACAAGTATA-TACACGTGTA--AATA--TTCTTT--------------AC---AA-----TA--GAA-TG-TTTGCATGCAT-TTCA----TAAAT-AAGAGGTTAT-TA-AA-TATAA-T-TTTTG------TTA-CA-AACTATGAAA-C--AACATAATTATT-TTATTTTAGATTTT----T-A-AC-ATT-ATTA-ATTT----TGTC------TT-A------C---TGT-------TAAAC-C-CCATACT-TGATCAT-CCCAAATAC---ATGATCATTTTTCTCC---ATTGA-GNACATTTCGTGTATTAT-ACCATTTGCTAA-A-AGC--TTTCACTCCNA--AAAATAGCGACCTGT-------CA----TAT-T-TG--CCTTTTCCAAGTCTCCAATGGATAGGTC------T-TC-----TTAATACAGGTTTG-ACTGTATGT---G-AAAGTA-AATTTTAAGCCACGTTTCATGTAAATACCTGCAGAATCCACNTGATAGGAGGTA
finalCons : TTTTGCAA-C-C-AT-TT-CGTGTA-T-T----TTCATGATATTTTTACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ACGCGATCCC-TAC--T---T-TCCA--TTTCGATCGAGCGTG--GTTAATCTG-A-G-AG-TTA-T-CG-CCCT--AACTG---ACTTTTCG--TTT-GA-ACGCGC----ACG------A-----AG-TTTGGT-GGTG--ATTCTGAT--T-TGTT--G--A-ACTC--TAAACTT---AGGATT-T-T-ACCC--AAA-T-T-A-TC-AATT-AAC-GAACATGT---AGTC----AGCGTGCAGGTCGTGGGAATCATCCGATAAATCCCGAGT--------------------GTT-GT-TTGTTT-------AACAAAATC--AT-GGA-TC--AT-GT-AATGA-----AACAA-TGGCTT-TGTT-AT-CCA-A-GGT--G-TGAAATTTTCGA--CTG-AC-TTTGAGAA-TTG-TAGG--GT-AGAT--GGTGTGAAA-CCTGGTGA-----CCCA-TT-ATATTC-CCTACAATG-GAAA--ATTA-AC-CTG-GCTGTT-GAC--GCAAAA--TTAG----ATTAAGA-CTGTGC-ATGGGAC-T---GATAAAAACT-TAGAAAACTGGAT-AT-TGCGA-CCTTTCCTAA-ACGAGATNTC--GTA-GTTTCCA-----A-GAA-T-A--TTTTA--AN--AGTGTAGA----CATGACCGGACTAGC-AG-TTCAC-T-TC-AACATATTACGA-G-T-TG----TTGA--CAC-ATCC-AGCT-AAAGAAAG-CCGC-CTGCATT-AGTTCAAAACTG-TGT-ACA-ATGAAATAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTATG---TG-T-AT-TAATAAAATTACAAGTATA-TACACGTGTA--AATA--TTCTTTAC-----------------AA-----TA--GAATTT-TTTGCATGCAT-TTCA----TAAAT-AAGAGGTTAT-TA-AA-TATAAT--TTTTG------TTATC--AACTATGAAAC---AACATAATTATT-TTATTTTAGATTTTT-----A-AC-ATT-ATTA-ATTT----TGTCTTAC----------------TGT-------TAAAC-C-CCATACT-TGATAATC-CCAAATAC---ATGATCATTTTTCTCC---ATTGA-GNACATTTCGTGTATTAT-ACCATTTGCTAA-A-AGC--TTTCACTCCNA--AAAATAGCGACCTGTCACATGTN---------------CCTTTTCCAAGTCTCCAATGGATAGGTCTCC------------TTAATACAGGTTTG-ACTGTATGT---G-AAAGTA-AATTTTAAGCCACGTTTCATGTAAATACCTGCAGAATCCACNTGATAGGAGGTA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TACAGTTTAGACTGCAATTGTGCACAAACCCACTGTATAAGCAAGTCACTGTTATATGTGACCATGAAAATTCCCTGCAAGGCATTACCCTATGTGTTGTACCTGTATTAAATGATCACCAGTCTGATGTGACCAAG
Unaligned ( gi|14 ): TGATAAACTAATGTAGATCTTATCAAGTACAGTCAAAACTGCCATAGCGACCCACTGTATTAAGCGACTCACTGTCATATTTTACCTGTTTTAAACAACCACCTGTCTGACGCGACCAA
Unaligned ( gi|23 ): ACATAAAAATAAGACAATGCAACATTTAAAGTACAGTCAAAACTGCCATAGCGACCCA
Unaligned ( gi|26 ): TACAGTCAAAACTGCCGTAGCAACCCACTGTATTAAGCGACTCACTG
Alignments
lowQualScore : 111 1111111 11 22222222 11 1 1111 333333333333 1111 2222222 11111 1111 3333333333333333333 11 2222222222 222222222 11111 111 222222222 11 11 22 111 11 11111 22 11 22222 111 111 111 11 111 1111 11 111 1 11 1111 1 111 1 11 2 2222222 222222 66666666666666666 222222 222222 1 111 3333 11 1 1 11 1 222 11111 22222 11 222222222 1111 11111 2222 2 111 11 1111 111 222 111 1 2222 11 11 44444444444444444444444 222 444444444444444 44444 111 111 22222 22222 1
lowQualScore : 4 4 4 8 4 0 4 4 8888 4 2 8 4 4 000 1111111 4 4 55 55 4 4 66 777 4 2 22 555 4 4 4 4 4 4 8 4 66 99999999 6 33 5 5 0 1 4444 999999999999 5 6666 0 77 888 5 999 8888 77 6666666 5 999 77 77 5 5 5 5 5 77 22222 4444 6 0000000000000000000 99 00 4444444444 6 6 444444444 22222 6 111 6 6 111111111 3 6 6 00 6 8 8 11 8 55 444 8 33 88 8 55555 0 77 33 2 55555 8 8 8 5 5 8 666 8 8 222 999 99 5 444 7777 11 8 8 66 8 444 0 0 8 0 11 8 8 4444 0 3 111 5 4 33 0 6666666 888888 44444444444444444 3 55 3 222222 666666 8 0 111 1111 33 0 0 8 8 11 0 8 6 6 3 7 9 444 1 5 5 5 77 1 5 44444 5 5 00000 6 5 5 8 5 11 0 000000000 666 4444 7 6 5 66666 6 6 666 6 6 6 3 7 3 8888 0 6 6 6 6 111 0 33 8 8 0 7777 444 444 444 8 99 6 2 3 0 8 6666 33 1 33 88888888888888888888888 6 888 888888888888888 7 8 88888 666 444 0 77777 66666 1 5
lowQualScore : . . . . . . . . .... . . . . . ... ....... . . .. .. . . .. ... . . .. ... . . . . . . . . .. ........ . .. . . . . .... ............ . .... . .. ... . ... .... .. ....... . ... .. .. . . . . . .. ..... .... . ................... .. .. .......... . . ......... ..... . ... . . ......... . . . .. . . . .. . .. ... . .. .. . ..... . .. .. . ..... . . . . . . ... . . ... ... .. . ... .... .. . . .. . ... . . . . .. . . .... . . ... . . .. . ....... ...... ................. . .. . ...... ...... . . ... .... .. . . . . .. . . . . . . . ... . . . . .. . . ..... . . ..... . . . . . .. . ......... ... .... . . . ..... . . ... . . . . . . .... . . . . . ... . .. . . . .... ... ... ... . .. . . . . . .... .. . .. ....................... . ... ............... . . ..... ... ... . ..... ..... . .
lowQualScore : 0 0 0 0 0 8 0 0 5555 9 0 1 0 0 000 8888888 0 0 55 55 0 4 11 888 4 9 22 222 4 4 4 4 4 4 9 4 11 33333333 2 88 0 7 8 0 2222 777777777777 7 1111 7 99 444 7 333 0000 99 1111111 7 444 99 11 7 7 7 7 7 77 00000 2222 7 8888888888888888888 22 88 0000000000 7 7 333333333 88888 7 777 7 7 222222222 2 7 7 22 7 0 0 00 0 88 222 0 00 88 0 22222 2 55 22 5 00000 0 0 0 0 6 0 888 0 0 000 444 00 6 888 0000 22 0 0 44 0 000 6 8 0 8 00 0 0 5555 0 2 888 0 5 88 0 0000000 000000 00000000000000000 5 00 2 222222 555555 8 0 000 2222 88 0 0 0 0 22 8 0 7 7 3 3 8 222 0 7 7 7 99 4 7 33333 7 0 88888 7 7 0 0 0 00 8 000000000 555 2222 3 7 7 22222 7 7 888 7 7 7 5 3 5 5555 0 7 7 7 7 777 8 00 0 0 8 4444 000 444 000 0 44 5 5 2 0 8 2222 88 0 88 77777777777777777777777 7 222 000000000000000 3 0 77777 777 000 7 55555 55555 0 5
consensus : TTTTGCAA-C-C-AT-TT-CGTGTA-T-T----TTCATGATATTTTTACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ACGCGATCCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-G-GTTAATCTG-A-G-AG-TTA-T-CG-CCC-T--AAC---TG--ACTTTTCG--TTT-GA-ACGCGC----ACG------A-----AG-TTTGGT-GGTG--ATTCTGAT--T-TGTT--G--A-ACTC--TAAA-CTT--AGGATT-T-T-ACCC--AAA-T-T-A-TC-AATT-AAC-GAACATG-T--AGTC----AGCGTGCA-GG-T--CGTG-GGAGTCA-T-CCGATA--AAT-CCCG--AG-T---GTT-GT-TTGT-------TTAACAAAATC--AT-GGA-T-C-AT-GT-A-AT-G-A--AACAA-TGGCTT-TGT-TAT-CCA-A-GGT--G-TGAAATTTTCGA--CTG-A-CTTTGAGA-ATTG-TAGG--GT-AGAT--GGTGTGAAA-CCTGGTGA-----CCCA-TT-ATATTC-CCTACAATG-GAA-A-ATTA-AC-CTG-GCTGTT-GAC--GCAAAA--TTAG----ATTAAGA-CTGTGC-ATGGGAC-T---GATAAAAACT-TAGAAAACTGG--A-T-ATT-GCGA-CCTTTCCTAA-ACGAGATNTC--GTA-GTTTCCA-----A-GAA-T-A--TTTTAAN--A--GTGTAGA----CATGACCGGACTAGC-AG-TTCAC-T-TC-AACATATTACGA-G-T-TG----TTGA--CACA-TCC-AGCT-AAAGAAAGCC-GC-CTGCATT-AGTTCAAAACTG-TGT-ACA-ATGAAATAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTA-T--GTG-T-AT-TAATAAAATTACAAGTATA-TACACGTGTA--AATATTCTTTACAA-----TA--GAATTNT----TTGCATGCAT-TTCATAAAT-AAGAGGTTAT-TA-AA-TATAA-T-TTTTGTTATC-AA-CTATGAAA-CAACATAATTATT--TATTTTAGATTTTT-A-ACA-TTA-TTAATTTTGTC-TTACT---GTTAAAC-C-CCATACT-TGATNATCCCAAATACA---TGATCATTTTTCTCC---ATTGA-GNACATTTCGTGTATTATA-CCATTTGCTAA-A-AGC--TTTCACTCCNAA--AAATAGCGACCTGT-------CAC----A-TG-TG--CCTTTTCCAAGTCTCCAATGGATAGGTC------T-CC-----TTAATACAGGTTTG-ACTGTATGT---G-AAAGTA-AATTTTAAGCCACGTTTCATGTAAATACCTGCAGAATCCACNTGATAGGAGGTA
Reference ( family-28 ) : TTTTGCAA-C-C-AT-TT-CGTGTA-T-T----TTCATGATATTTTTACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ACGCGATCCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-G-GTTAATCTG-A-G-AG-TTA-T-CG-CCC-T--AAC---TG--ACTTTTCG--TTT-GA-ACGCGC----ACG------A-----AG-TTTGGT-GGTG--ATTCTGAT--T-TGTT--G--A-ACTC--TAAA-CTT--AGGATT-T-T-ACCC--AAA-T-T-A-TC-AATT-AAC-GAACATG-T--AGTC----AGCGTGCA-GG-T--CGTG-GGAATCA-T-CCGATA--AAT-CCCG--AG-T---GTT-GT-TTGT-------TTAACAAAATC--AT-GGA-T-C-AT-GT-A-AT-G-A--AACAA-TGGCTT-TGT-TAT-CCA-A-GGT--G-TGAAATTTTCGA--CTG-A-CTTTGAGA-ATTG-TAGG--GT-AGAT--GGTGTGAAA-CCTGGTGA-----CCCA-TT-ATATTC-CCTACAATG-GAA-A-ATTA-AC-CTG-GCTGTT-GAC--GCAAAA--TTAG----ATTAAGA-CTGTGC-ATGGGAC-T---GATAAAAACT-TAGAAAACTGG--A-T-ATT-GCGA-CCTTTCCTAA-ACGAGATNTC--GTA-GTTTCCA-----A-GAA-T-A--TTTTAAN--A--GTGTAGA----CATGACCGGACTAGC-AG-TTCAC-T-TC-AACATATTACGA-G-T-TG----TTGA--CACA-TCC-AGCT-AAAGAAAGCC-GC-CTGCATT-AGTTCAAAACTG-TGT-ACA-ATGAAATAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTA-T--GTG-T-AT-TAATAAAATTACAAGTATA-TACACGTGTA--AATATTCTTTACAA-----TA--GAATTTT----TTGCATGCAT-TTCATAAAT-AAGAGGTTAT-TA-AA-TATAA-T-TTTTGTTATC-AA-CTATGAAA-CAACATAATTATT-TTATTTTAGATTTTT-A-ACA-TTA-TTAATTTTGTC-TTACT---GTTAAAC-C-CCATACT-TGATAATCCCAAATACA---TGATCATTTTTCTCC---ATTGA-GNACATTTCGTGTATTATA-CCATTTGCTAA-A-AGC--TTTCACTCCNAA--AAATAGCGACCTGT-------CAC----A-TG-TN--CCTTTTCCAAGTCTCCAATGGATAGGTC------T-CC-----TTAATACAGGTTTG-ACTGTATGT---G-AAAGTA-AATTTTAAGCCACGTTTCATGTAAATACCTGCAGAATCCACNTGATAGGAGGTA
gi|1 : TTTTGCAAAC-C-ACCTT-CATGTAGTAT----TTCGTCATATATT-ACCTT--ATTCAG------ACC-------AT-A-TAT--TTTTCAATTA--CA-CC----TCCC-TAC--T---TATCCA--TT-CGATCG-GC------TTTATCTG-A-GCAGATTA-T-CC-CCC-T--AAC-------ACTTTCAT--TTT-GA-ACCC-C----ACA------T-----AA-TTT----------AATCTATC--T-TGT---G--C-ATTC--TAAA--TC--AGGGAT-T-T-ACCC--AAA-T-T-A-TC-AATT-A---GAAAAT--T--AGTC----AGC-TGCA-GA-TGACGTG-G-AGTCA-T-CCAATA--AAC-CCCG-----C---ATT-GTGTTGT-------T-AACCAAATC--AC-GTA-T-CCAT-GT-A----------------GGCTT-TGT--AT-CCA-A-GCTTAG-TGAA--TTTCGA--CTG-A--TTTGAGACATTA-TAGGTTAT-ACAT--AGTGTGAAAACCTCGTGA-----CCCA-TT-ATATTC-CCTACACTG-GAACA-AATA-AC-CT--GCTG-T-GAA--GC-AAA--TTAG----AT--AAA-CTGGAC-AT-GTACAT---GAT-AAAACT-TAGAAAACTGATTA-T-ATC----A-CC-TTCCT-A-ACAA----TC--GTA-AGTTTCA-----A-GAA---A--ATTTAAA--A--G--------------------CTA--------CAC---------ATATTAAGA-G-T-TG----TTTA--CACA-TCCAAGCT-AAAGAAAGCT-GC-CTTCATT-AGTTCAAAACTG-TGT-ACT-TTG-AATAT---TGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-CCCAGCATTA-T---TG-T-AT-AAAT
gi|1 : tgaaatactatgacacagaatgcacattcagaactgctacagtcaaaactgccatagcgacccacctgtgtaacacccactcacatgttgaccataaacaaattcccccaacgtaccctataactattactaattatacgacactgtactgaccgcgacaacgaccatgat-AT-TAATAAAATTACAAGTATA-TACAATTGTA--AATATTCTTTACAA-----TA--AAATGTT----TTGCATGCAT-TACATAAAT-AAGAGG---T-TA-AA-TATAA-T-TTTTGTTATC-AA-TTTTGAAA-CAACAT-ATTA----TATTTTAGATGTTTAA-ACA-TTA-TTAATTTTGTC-TTACT---G-TAAAA-C-CCATACT-TGATCAT-CCAAATACA---TGATCA-TTTTCTCC---ATTGA-GCCCATTTTGTGTATTATG-CCATTTGCTAA-A-CGC--TTTCACTCCAAA--AAATAGggagaagcaacacttcattactttctttctatcatgagaggcacattaataaaattacaagtatatacaattgtaaatattctttacaataaaatgttttgcatgcattacataaataagaggttaaatataatttttgttatcaattttgaaacaacatattatattttagatgtttaaacattattaattttgtcttactgtaaaacccatacttgatcatccaaatacatgatcattttctccattgagcccattttgtgtattatgccatttgctaaacgctttcactccaaaaaataggcaac
gi|10 : tgaaatactatgacacagaatgcacattcagaactgctacagtcaaaactgccatagcgacccacctgtgtaacacccactcacatgttgaccataaacaaattcccccaacgtaccctataactattactaattatacgacactgtactgaccgcgacaacgaccatgatttttgcaaaccaccttcatgtagtatttcgtcatatattaccttattcagaccatatatttttcaattacacctccctacttatccattcgatcggctttatctgagcagattatccccctaacactttcattttgaaccccacataatttaatctatcttgtgcattctaaatcagggatttacccaaattatcaattagaaaattagtcagctgcagatgacgtggagtcatccaataaaccccgcattgtgttgttaaccaaatcacgtatccatgtaggctttgtatccaagcttagtgaatttcgactgatttgagacattataggttatacatagtgtgaaaacctcgtgacccattatattccctacactggaacaaataacctgctgtgaagcaaattagataaactggacatgtacatgataaaacttagaaaactgattatatcaccttcctaacaatcgtaagtttcaagaaaatttaaaagctacacatattaagagttgtttacacatccaagctaaagaaagctgccttcattagttcaaaactgtgtactttgaatattgtggtttatttaatgtctttcaatgatttgaataaattcccagcattattgtataaatggagaagcaacacttcattactttctttctatcatgagaggcacG-TGT-ACA-ATGAA-TAT---TGTGGTTTATT-TA-AGTGTCTT--TCAATG-AT-----TTG-AGTAAATT-TTCAGCATTATT--GTA-T-AT-T-ATAAgcaac
gi|10 : TT-TCTATCATGA-GAGGTGCT-GT-TA-TAAAATTACAAGTATA-TATATGTGTA--AATATTCTTTACAATACGGTA--GAATGTT----TTGCATGCAT-TTCATAAAT-AAggagaagcaacacttcattactttctttctatcatgagaggtgctgttataaaattacaagtatatatatgtgtaaatattctttacaatacggtagaatgttttgcatgcatttcataaataa
gi|11 : gtgtacaatgaatattgtggtttatttaagtgtctttcaatgatttgagtaaattttcagcattattgtatattataaggagaagcaacacttcattactttcACCTGT-------CAT----A-TG-TGACCTTTTTTCAAGTCTCTGATGGA-AGGTC------T-C------TTAATACAGGTTTG-ACTGTATTTTAAA-AAAGTA-G-TGTTAAACCACATTTCATGTAAATACCTGCAGAATCCACATGATAGAAGGTA
gi|12 : tgtattaagagaccTTTTGCAA-C-C-AT-TT-CGTGTA-T-T----TTCATGATATTTT-ACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ACGCGATTCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-A-TTTAATCTG-A-G-AG-TTA-T-CGCCCC-T--AAC-------AC-TTTCG--TTT-
gi|15 : gatTTTTACAA-C-C-AT-TT-CGTGTA-G-T----TTCATGAAAATTTT--CCT-TATTTAA-CAATTACC-------GC-A-TAT--TTTTGTATTA--CA-ACt
gi|16 : tgatgcaaccaacgaacaggatTTTTACCTT-TATTCAG-TG---ACC-------AT-A-TAT--TTTACGATTA--CA-ACGCGATCCC-TAC--T---T-TCCA--TTGCGATTGAGCGT-G-GTTAATCTG-A-G-AG-TTA-C-CACCCC-T--AAC---atattcc
gi|17 : AAT-AAGAGGTTATATA-AA-TACAA-T-TCTTGTTATC-AA-CTATGAAA-CAACTTAATTATT-ATATTTTAAATTTTTAA-ACA-TTA-TTAATTTTGTC-TTATT---
gi|18 : c-TT-ATATTC-CCTACAATG-GAA-A-ATTT-AC-CTG-GCTGT--GAT--GCAAA---TTAG----ATTAAGA-CTGTGC-ATGAGAC-T---GAT-AAAACT-TAGAAAACTGG--ATT-ATT-
gi|19 : CTGT-------CAT----AGTG-TG--CCTTTTTCAA-TCTCCAATGGA-AGGTC------T-C-------TAATACAGG--TGAACTGTATGT---------TATAATTATAAGCTACATT
gi|2 : taagatgaccaTTTTGCAA-C-C-AT-TT--GTGTA-T-T----TTC--GATATTTTTACCTT-TATTCAG-CG---ACC-------AT-A-TAT--TTTCCGAT-A--CA-ACGCGATTCC-TAC--T---T-TCCA--TTTCGATCGAGCGT-G-GTTAACCTG-A-G-AG-TTA-T-CG-CCC-T--AAT---TC--ACTTTTCG--ATT-GACATGCGC----AGA------A-----AA-GTTGGT-GGTG--ATTCTGAT--T-TGTT--G--A-ACTC--TAAAACTT--AGGATT-T---ACCC--AAA-T-TTA-TC-AATT-AAT-GAACAGG-T--AGTC----AGCGTGCA-GG-T--CGGT-GGAGTCA-TTCCGATA--AAT-CCCG--AG-T-----T--T-TTGT-------TTAACAAAATC--AT-GAA-T-C-AT-GTCA-AT-G-A--AACAA-TGGCTTGTGT-TAT-CCG-A-GGT--G-TGAA--TTTCGA--CTG-A-CTTTGAGA-ATTG-TAGG---T-AGATTAGGTGTGAA--CCTGGTGA-----CCCA-TT-ATTATC-CATACA-TG-GAA-A-ATTA-AC-CTG-ACTGT--GAC--GCAAAA--TTAG----AT--AGA-CTGTGC-ATAGGAC-T---GATAAAAACT-TAGAAAACTGG--A-TTATTTGCGA-CCTTTCCTGA-ACGAGATATC--GTA-GTTTTCA-----A-GAA-T-A--TTTTAAT--ATAGTGT-------CTTGACCGGACTAGC-AG-TTCAC-T-TC-AACATATTACGATG-T-TG----TTGA--CACAATCC-AGCT-AAAGAAAGCCCGC-C-GCATT-AGTTCAAAACTG-TAT-A-A-ATGAA-TAT--GTGTGGTTTATT-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-TCCAGCATTA-T--GTG-T-AT-TAATAAAATTACAAGTAAA-TACGC-TGTA--AATATTCTTTACAA-----TA--GAA-TGT----TTGCATGCAT-TTCATAAATGAAGATGTTATATATAA-TATAATT-TTTTGTTTAA-AA-CTATG-AA-CAACATAA-TATT-TTATTTTAGATTTTT-A-ACA-TTA-TTAATTTTGTC-TTACT---GTTAAAC-C-CCATACT-TG-TAATCCCAAGTACA---TGAT-A-TTTTCTCCAATATGAA-GCACATTTCGTGTATTATA-CCATTT-CTAA-A-AGC--ATTCACCTCCAA--AAATAGCGACCTGT-------CAT----ATTG-TA--CCTTTTTCAAGTCTCCAATGGA---GTC------T--C-----TTAATACAGG-TTG-ACTGTATGT---GCAAAGTA-AATTTTAA-----GTTTTAT-T---TACCTG-----TTCACCTGA-AGGAGATA
gi|20 : GCT-AAAGAAACCC-GC-CTGTATG-AGTTCAAAACTG-TGT-ACA-ATG-AGTAT---CATGG----TG-TA-A-TGTCTT--TCAATG-AT-----TTG-AATAAATT-Tt
gi|21 : atACCTGT-------CAC----------T--TCTTTTCCCATTCTCCAATAGATA-GTCTATTATT-TA-----TTAGTACAAATTTG-ACTGTA
gi|22 : tgtattaagagaccCCTGT-------CAC----------T--TCTTTTCCAATTCTCCAATAGATA-GTC------TATCATTTATTAGTACAAATTTG-ACT
gi|24 : tgtattaagagactgTTTTGCAA-C-C-AT-TT-CGTATA-T-T----TTCACGATA-TTTTACCTT-TATTCAG-CC---ACC-------A
gi|25 : atTTTTGCAA-C-T-GT-TT-CGTGTA-T-T----TTCATGATA
gi|3 : cacgaccaacgaccatgatTCTTGCAA-CTC-AT-TTGCGTGTA-T-T----TTCTTGATATT---ACCTTATAT-CAGTCG---ACC-------ATTA-TAT--TT--CGATT---CA-ACGCGATCC--TAC--TCCAT-TCGA--TTTCAA--GAACGT-G-GTTAATCTG-AAG-AG-TTA-TTCG-CCC-T--ACCCTGTG--ACTGTTCGATCTT-GA-AC-CGC----ACGTGTAATA-----AG-TTTGATCGGTGTAATTC-GAAAAT-TGTG--G--A-ATTC--TAA---CT--AGGATT-T-T-AGCC--AA--T-T-AGTC-AAT--AAC-GAACAGG-T--AGTC----AGCGT------------------------------A--AA--CCCA--TG-T---GTTTGT-TTGT-------T--ACAAAATC--A--GGA-T---AT-GT-A-TT-GGA--AACAA-CGGCTT-TGT-ATT-CCA-A-GGT--G-TGGAATTTTCGAACTTG-A-GTTT-AGA-ATTGATAGG--GT-AGATACGGTGTAAAA-TCTGGT-A-----CGCAGTT-ATATTC-C-TA-AATG-GAA----TTA-AC-C-A-ACTGTT-GACT-GCCAAA--TAGG----ACTAAAG-CAGTGC-ATGGGA--T---GCTAAGTACTGTAGAAAACTGG--A-T-ATT-GCGA-CCTTTCTAAG-ACGAGATGTCCGGTACGTTTCTA-----ACGAA-TAA--TTTTAA---A--GTGTAGA----CATGACAGGACTAAG-AGTTTCAC-T-TCAAACATATTACGA-G-TCTGT---TTGAAGCACA-TCC-A-CT-AAAGAAAGCT-G--CTGCATT-AGTTCAAAACTG-TGTAACACAGGAAATCC--GTGTGGTTTATTCTA-A-TGTCTT--TTATTGCAT-----TTGAAATAAATTCTCCAGCATT
gi|3 : att-T-ATGTAATAAAATTACAAGTATAGTACACGTGTACGAATTGTC-TTACGA----------AATCATATGGTTGCA-GCATGTTCATAAAT-AAGAG--TGT-AA-AA-TATAA-C-TTTTGTTATCAAA-TTATGAGA-GAAC-CAAATAT-----CTTTAGATTTTT-ACACA-TTA-TAATTTTTGTCTTTCCT---GTTAAACGC-CTATACT-TGATCATCGCAAGTAAT---TGATCATTTTTCTCC---ATTGACGGACATTTCGTGT-TTATA-ACATTTGCTGATACAGCTTTTTCACTCCAAG--AAAAGGCGACCTtatttttttttttttttttttttttttgtataaatggagaagcatactcttcaaatatctttctttcttatcactgagaggatatgtaataaaattacaagtatagtacacgtgtacgaattgtcttacgaaatcatatggttgcagcatgttcataaataagagtgtaaaatataacttttgttatcaaattatgagagaaccaaatatctttagatttttacacattataatttttgtctttcctgttaaacgcctatacttgatcatcgcaagtaattgatcatttttctccattgacggacatttcgtgtttataacatttgctgatacagctttttcactccaagaaaaggcgacct
gi|4 : atttcttgcaactcatttgcgtgtattttcttgatattaccttatatcagtcgaccattatatttcgattcaacgcgatcctactccattcgatttcaagaacgtggttaatctgaagagttattcgccctaccctgtgactgttcgatcttgaaccgcacgtgtaataagtttgatcggtgtaattcgaaaattgtggaattctaactaggattttagccaattagtcaataacgaacaggtagtcagcgtaaacccatgtgtttgtttgttacaaaatcaggatatgtattggaaacaacggctttgtattccaaggtgtggaattttcgaacttgagtttagaattgatagggtagatacggtgtaaaatctggtacgcagttatattcctaaatggaattaaccaactgttgactgccaaataggactaaagcagtgcatgggatgctaagtactgtagaaaactggatattgcgacctttctaagacgagatgtccggtacgtttctaacgaataattttaaagtgtagacatgacaggactaagagtttcacttcaaacatattacgagtctgtttgaagcacatccactaaagaaagctgctgcattagttcaaaactgtgtaacacaggaaatccgtgtggtttattctaatgtcttttattgcatttgaaataaattctccagcatttatttttttttttttttttttttttttgtataaatggagaagcatactcttcaaatatctttctttcttatcactgagagga------A-----AG-TTATGT-GGTG--ATTCTGAT--TCTGTT--G--GCAC-C--TACA-CTTC-GGGATT-T-TTACCC--AAAAT-T-A-TC-AATT-AACTGAACATAAT--AGTC----A-CGTGCA-GGGT--CGTG-GAA--CA-T-CCGATA--AAT-CTCAGAAG-TTCGGCT-GT-TTGT-------TAACCAAAATCTTAT-GGACT-C-AT-GT-A-AT-G-A--A-CAA-TG-CTT-TGTATAT-CTA-AAGGT--GGTGAA--TTCCGA--CTGTA-CTTTGAGA--TTG-TAGG--GTGAAAT--AGGGCGAAA-CCTGGTGATCACACCTA-TTGATATTCACCTACAATGTGAA-ATATTACACGCTGTGCTGTTTGACAAGCAAAGATTTAGCATCATTAAGAACTGTACTATG--AC-TAGGGATAAAA--C-TAGAAA-CTGG--A-T-AT--GTGATCCTTCCCTAATACGA-ATTCC--GTAAGTTTCCATCATTA-GAAAT-AAATTTTAAGGAA--G-GTAGAACCACATGACCTGAC-AGCTAG-TTCACATATC-AACATATTG-GA-GAT-TGATGATCGA--CACC-ACC-AGCTTAACGAAAACC-GTTCTGCATTTAGTTACAAACTGCTGT-ACAGATGAAATATTAGT-TGGTTTATT-TATA-TGTCTTAATCAA-G-ATGAATATTG-AATAAATT-TCCAGCATTA-T---TG-TCAT-TAA
gi|4 : TACAA-----TACGGAACTGT----TTGCA------------AAT-AGCAGGTTAT-TA-AAATACGA-TATTTTTTTATC-AAGCTATGAAAACAACACAATTATTATTATTTTAGATTTTA-A-ACAATTAATTAATTTTTTG-TTACTCATGTTAAAC-CACCATACTGTGATATACTCAAATATACAATGAT-ATTTTTCTCC---ATTGT-G-ACATTT-GT-TATTATAACCATTGCCTAA----GC--TTTCACTTCCAATAAAATAGCGACCTTTAAGAGACCACTTCTA-TGCTG--CCTTTTCAAAGGCTCCA-TGGACTGGTC------T-CC-----TTAATACAGGTTaaggagaagcaacacttcatactttcttttctatcaatgagaggctactggttataaagatacaacagtatcatacaatacggaactgtttgcaaatagcaggttattaaaatacgatatttttttatcaagctatgaaaacaacacaattattattattttagattttaaacaattaattaattttttgttactcatgttaaaccaccatactgtgatatactcaaatatacaatgatatttttctccattgtgacatttgttattataaccattgcctaagctttcacttccaataaaatagcgacctttaagagaccacttctatgctgccttttcaaaggctccatggactggtctccttaatacaggtt
gi|5 : aagttatgtggtgattctgattctgttggcacctacacttcgggatttttacccaaaattatcaattaactgaacataatagtcacgtgcagggtcgtggaacatccgataaatctcagaagttcggctgtttgttaaccaaaatcttatggactcatgtaatgaacaatgctttgtatatctaaaggtggtgaattccgactgtactttgagattgtagggtgaaatagggcgaaacctggtgatcacacctattgatattcacctacaatgtgaaatattacacgctgtgctgtttgacaagcaaagatttagcatcattaagaactgtactatgactagggataaaactagaaactggatatgtgatccttccctaatacgaattccgtaagtttccatcattagaaataaattttaaggaaggtagaaccacatgacctgacagctagttcacatatcaacatattggagattgatgatcgacaccaccagcttaacgaaaaccgttctgcatttagttacaaactgctgtacagatgaaatattagttggtttatttatatgtcttaatcaagatgaatattgaataaatttccagcattattgtcattaaaaggagaagcaacacttcatactttcttttctatcaatgagaggctactggttataaagatacaacagtatcaTTTTGCAA-A-C-AT-AT-TACG-A-T-TCGATTTCATGATATTATTAACTT-TATTCAG-TG---ACCCATTTCTAT-A-TGTAGTTTCCGATTA--CA---GGAGTCCTGTACGTT---C-TCCATGTTTCGATCGTGCGT-ATGTTAATCTGAA-G-AG-TTATT-CG-CCC-TCGAGA---TG------TTCGTTTTT-GA-ATGCGCATGTATG------A-----AGTTTTGGT-G--G--ATTCTGAT--T-TGCTTGG--A-ACTCGGTAAC-TTC--AGGATTGTAT-ACCCCAAAA-TAT-A-TCAAATTAAAC-GAACATT-TGAAGTCGACAGGCGTGCA-GG-T---GTGAGGAAAAATT-TCAATAATAATATATA--AG-A---GTT-GT-TCGTTATATTGTTAATGAAACA--ATAGGA-TGC-ATAGT-AGATAG-ATTAACAATTGGCTT-AGT-TATACTAGA-GGT--G-TGAAATTTTCGA---TG-AGCATGGAGA-AATG-TAGG--G
gi|6 : atTTTTACAA-C-C-AT-TT-CATGTG-A-T----TTCATGATATATT-ACCTT-TATCTAA-CA---ACC-------AT-A-TAT--TTTTCGATTA--CC-ATACGATCCC-TAA--T---T-TTGA--TTTCGGTCGAGCTT-G-GCTAATTGG-A-G-AC-TTA-T-CG-TCC-C--AAA----A--ACTTTT-G--TTT-AA-AC-TAC----ATG------GGTTATGG-TTCGTT-GGTG--ATTTTGTA--T-TGTT--GGCA-ACTG--TAA----TGGAGGATT-T-T-ATCC--TAC-C-T-A-TC-AATT-gt
gi|7 : ataaaataatgcctatagatgaacacttagaaatacagtaaatctgctatagcggcccactgtattaagcaactcactgtatgaccgtaaaattccccttcccccctggcgttaccctatatattgcattaaacaaccacctgtctgacgcgactaacggccatgatTAGTTTATT-TA-A-TGTCTT--T---------------------AATT-TCCAGCATTA-T--
gi|7 : -TAATAAAATTACAAGTATA-TACACGTGTA--AATATTCTTTACAA-----TA--GAATTTT----TTGCATGCAT-TTCATAAAT-AAGAGG---T-TA-GA-TATAA-T-TTTTGTTATC-AA-TTATGAAA-CAACAT-ATTA----TATCTTAGATTTTTCA-ACA-TTA-TTAATTTTGTC-TTACT---GTTAAA--C-CCATAAT-TGAT----CCAAATACA---TTATCG-TTTTCTCC---ATTGA-GACCATTTtctataaaaagagaagcaactcttcattactttctttctatcatgagagttactgtaataaaattacaagtatatacacgtgtaaatattctttacaatagaattttttgcatgcatttcataaataagaggttagatataatttttgttatcaattatgaaacaacatattatatcttagatttttcaacattattaattttgtcttactgttaaacccataattgatccaaatacattatcgttttctccattgagaccattt
gi|8 : tagtttatttaatgtctttaatttccagcattattctataaaaagagaagcaactcttcattactttctttctatcatgagagttactgTTTGGCAA-C-CGATGTT-CGTG-A-T-T----TTC-TGAT--TTTTACCTT-TATTCAG-CGA--ACC-------AT-ACTAT--TTTCCGATTAAGCACACGCGATCCC-TAC--T---T-TATGATTTTCGATTGAGCGTGG-GTTAATCT----G-AG-TTA-T-CG--CC-T--AAT---TG--AC-TTTCG--TTG-AA-AC
gi|9 : atagtacagtcaaaactgcaatatgcgacctactgtattaagcgactcactgtcacaggtgtgaccataaacattccccccaaagcgttaccctatatttacctgtattaaacgacactgtctgacgcgaccacgaccatgataG---ACC-------AT-A-TAT--TTTCCGATTA--CA-ATGCGATCCC-TAT--T---T-TC-A--TTTCGATTGAGTGT-G-GTTAATCTG-A-G-AG-TTA-T-CG-CCCCT--AAA---TATAACTTT-CG--TTTTGA-ACGCGC----ACGTAAT--A-----AG-TTTTAT-GGTG--ATTCTGAT--T-TGTT--G--GCATTC--TAAA-CTT--AGGATT-T-T-ACCC--AAA-T-T-A-TC-AAGT-AAG-GAACATG-T--AGTC----AGCGTGCAGGG-T--TGTGTGGAGTCA-T-CTGATA--AAC-CCTG--AGTT---GTT-GT-TTGT-------TTAACAAAATC--TT-GG--T-C-AT-GT-A-TT-G-A--AACAA-TGGCTT-TGT-TAT-CC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TACAGTTTAGACTGCAATTGTGCACAAACCCACTGTATAAGCAAGTCACTGTTATATGTGACCATGAAAATTCCCTGCAAGGCATTACCCTATGTGTTGTACCTGTATTAAATGATCACCAGTCTGATGTGACCAAG
Unaligned ( gi|14 ): TGATAAACTAATGTAGATCTTATCAAGTACAGTCAAAACTGCCATAGCGACCCACTGTATTAAGCGACTCACTGTCATATTTTACCTGTTTTAAACAACCACCTGTCTGACGCGACCAA
Unaligned ( gi|23 ): ACATAAAAATAAGACAATGCAACATTTAAAGTACAGTCAAAACTGCCATAGCGACCCA
Unaligned ( gi|26 ): TACAGTCAAAACTGCCGTAGCAACCCACTGTATTAAGCGACTCACTG