lowQualScore : 1 222222 111 2 1 444444444444 11 11 111 11 1 3 333333 11 3333333333 111 1 333333333333 2222222 77777777777777 222222222
lowQualScore : 0 8 222222 1 888 6 1 6 5 5 2 5 2 888 5 0 0 5 0 3 555555555555 0 00 6 6 55 111 44 6 99 8 5 8 111111 6 00 66 2222222222 0 55 000 77 66 77 1 5 6 66 4 4 000000000000 777 4 8 0000000 4 8888 4 44444444444444 4 4 4 000000000 9999 4 66
lowQualScore : . . ...... . ... . . . . . . . . ... . . . . . . ............ . .. . . .. ... .. . .. . . . ...... . .. .. .......... . .. ... .. .. .. . . . .. . . ............ ... . . ....... . .... . .............. . . . ......... .... . ..
lowQualScore : 2 0 444444 0 333 7 0 7 7 0 5 0 5 888 5 0 8 0 1 6 111111111111 8 22 7 7 88 777 55 7 22 0 0 0 666666 0 55 99 1111111111 7 99 999 99 44 99 4 7 0 11 4 4 999999999999 888 4 9 1111111 4 5555 0 33333333333333 0 0 0 222222222 4444 4 11
consensus : NAACAAC-AC----GGGTCTT---GTATTTTCT-CAAG-AACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCGG-ATATTTACGA-TGTACATACACAAGTATCTTG--CA---GGTATCACAT-GCC-A-CGT--GCG---AGTAN-TACCTGTACCTGTC--TT-GTCAAAACA-AAGGA-TTTGCTTTCGGAATATATCTAATC-AC--TGCTC-AATTT---AGATTA-TGT--CTG--CTCTGTCCAAAA-CT--AT-CGAAG-TTTGACAACTTATC--GGATA-A-G---TAATAG---T---T-C-TCT---T---AT-CA----T-GAGTTCTCAA--ACTA-T-ATATA-TTTTGATAT-GCGAT-T--G-G-A--ATA----ATATACACGGAC-T--TCGAACAAA
Reference ( gi|3 ) : AAAAAAC-AC----GTGTCTT---GT-TTTTCT-CAAG-AACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCAG-ATATTTATGA-TGTACATACACAAGTATTTTG--CA---GGTATCACAT-ACC-A-CGT--GCG---AGTAC-TACCTGTTCCTGTC--TT-GTCAAAACACAAGGA-TTTGCTTTCAAAATGTATTTAATT-AC--TACTT-A-TTC---AGATTA-TGT--CTG--CTTTGTCCAAAA-CT--AT-CGAAG-TTTGACAATTTATC--GGATA-A-G---TAATAG---T---T-C-TCT---T---AT-CA----T-GAGTTCTCAAGTACTAGT-ATATA-TTTTGATAT-GCGAT-T--G-G-A--ATA----ATATACACGGAC-T--TCGAACAAAC
gi|7 : AACAAC-AC----GGGGCTT---GTATTTTCT-CAAA-AACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCGG-ATATTTATGA-TGTACATACACAGGTA-TCTG--CA---GGTATCACAT-GCC-A-CGC--GCG---AGTAA-TACCTGTACCTGTC--TT-GTCAAAACA-AAAGA-TTTGCTTTC-GAATATATCTAATC-AC--TACTCAA-TTA---AGATTG-T
gi|14 : aaaacAACAAC-AC----GGGACCT---GTATTTTAT-CAAG-AACAA-TTC-TTGGAATCAA-TTAGGC---GGAGCGG-ATATTTATCA-TGTACATACACAAGTATCT---------GGTATCGCAT-GCC-A-CAT--GCGAGTAGTACGTACCTGTACCTGTT--Tttg
gi|19 : aaaacAACAAC-AA----GAGTCTT---GTGTTTTCT-CAAG-AA-AA-TTCCTTAGAATCAA-ATAG-T---GGAGCGG-ATATTTACGA-TGTACATACACAAAT
gi|20 : aaaccAACAACTAC----GGGTCTTTTTGTATTTTCTTCAAG-AACAAATTCCTTGGAATCAATTTAGGCTCGGGAGCAGCATAGT----A-TGTAC
gi|4 : aaaaacAAAAC-ACAACAGGGTCTTT--GT-TTT----CAAGCAACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCGGGATATTTATGAATGTAC-TACAACAG-ATCT-G--CA---GGTATCACAT-ACC-AACGTT-GCG---AGTAA-TACCTGTACTGATC--TTCATCAAAACA-AAGGA-TTTGCTTTCA---TATATCTCATC-AC--TACTC-AATTT---AGATTG-T-----TG--CTTTGTCCAAAA-CT--A--CGAAGTTTTGACAACTTATC--GGATA-A-G---T-ATAGTTCT---T-C-TCT---T---AT-CG----T-GAGTTCT-AA--ACTA-T-ATA-A-TTTTGATAT-TCGAT-T--G-G-
gi|13 : T---GT-ATTTTT-TACC-AGCAA-TTC-TTAGAATCAA-TTAGTG---GGGGCGG-ATATTTACGA-TGTACATACACA------TTGATCT---GGT-TCACAT-GCCAA-CGT--GCG---AGTAT---CTTG--CCTGTCTTTT-TTTAAAACA-AAGGA-TTTG
gi|12 : taaagcaaccgggtcgttaaAA-AACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCGG-ATATTTAGGA-TGTACATACACAAGCA-CATG--TATCTGGTATCACAT-GCC-A-CGT--GCG---AGTAA-TACCTGTACCTGTT--TT-GTCAAAACA-AAGGA-TTTGCTTTC-GAATATATCTAATC-AC--TGCT
gi|21 : -TTCCTTGGAATAAA-TTGACC---GGAGATG-ATATTTATGA-TGTACATACACAAGTATct
gi|2 : aaaagatcaacacgggttttgtatTCACATTGCC-A-CGTCTGCG---AGT-T-TA---ATACCTGTC--TT-GTCAAAACAAAGGGGGTTTGCTTTCGAAA-ATATCTAACTCAC--TGCTC-AATTT---AGATTA-TGT--CTG--C-CTGTCCAAGT-AT--AT-CGAAG--TTGAAACCTTATC--GGATA-A-A---T-ATAG---TTCAT-C-TCT---A---AT-CA----T-GAGTTTTCAACTAATGTT-ATATATTTTTGATAT-GCGA--T--G-G-ATGATATAACATGTACAAGGACTT--TCGGACAAAc
gi|8 : atTTTCGAA-TATATCTAATC-AC--TACTA-AATTT---TGATT---GT--CTG--CTTTGTCCTAAA-CT--AT-CGAGA-TTTGACAACTTACC--GGATA-A-G---T-ATAGTTCT---T-C-TCT---T---AT-CA----T-GAGTTCTCA---ACTA-T-GTA-A-TTTTGATAT-TCGAT-TG-G-G-A--ATA----ATATACACAGAC-T--TCCAACAAactgaattgcatgttttttatcaagtcttggaacacacttacatcaaatatcaactgacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgctt
gi|1 : TATCTAATC-AT--TGCTC-A-TTTT--ATATTA-TGT--CTG--TTCTTTCCAAAA-CT--AT-CGAAG-TTTGACAACTTGTC--GGATA-A-GTATTAATAGTTCT---T-C-TCT---T---AT-CA----T-GAGTTCTCA---AC--------TA-TTTTGATAT-GCGAT-TG-G-G-A--ATA----ATATACACGGAC-T--TCGAACAAAgagttt
gi|6 : TGTCTAATA-AC--TACTC-AGTTT---AGATTA-TGT--CTG--TTCTGTCCAAAA--T--AT-CGAAG-TT---CAACTTA-CAGGGATACA-G----GAT-G---T---TGT-TCT---A---AT-CA----T-GATTTCTCAA-TAATTGTGATA-A-TT---ATAT-GCGAT-T--GAG-T--ATA----GTAT-CAAGGAC-T--TCAAACAAAactgatttggatgcgttttatcagtcttgtacatgcatatcgaagtttgccgtatgatttcctcaaatatcaactgacacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacacttaaatgtggtacaagtatattcgccgactcaatatatttcacacctttttcaaacctattttgctagacgtccaagcttaggaaacttggggactctagttcttttgttgcgaaaaacccttcgaatttgcatggattaaacaaaagctccttcttaacaccgcgccgatcaataatacattttacccagattagcgagacacaaccctcgaatttgcgtggattttacagtgctcttttatttaaaaatttaagaaaagtttgatgaattaaagtggttctttatattttgaaaaaaatataacggcacgcacatgtctactatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccagtttgcaatggaaaaactttcaatagtgacacgattttatataattcttaagaagtattataatacctgaactatcgcacaacattaacacgcactgttcctttgtgattccaacatagaggtatatgtatacatatattatattttgtgcttatactaaacgctagta
gi|5 : aATCTAATC-ACATTGCTC-A-TTTTTTA-ATTAGTGT---TGTTCTTTTTCCAAAAACT--ATCCGAAG-TTTGA-AACTTGTC--GGATG-A-ATATTAATAG---T---T-CTTCTCTAT---AT-CA----TGGAGTTCTCAA--ACTA-T-------TTTTGATATCGCGAT-TG-G-G-A--ATA----AT-TACACGGAC-TTATCGAACAAAactgaattggtgtgttttctcagtcttgtgcacacaatatgatatcgaagtaggccgtttgagctcctcaaataccactgatacag
gi|17 : TA-TGTACTTG--CTCTGTCCAAAA-CCTAATGCGAAG-TTTGACTACTTATC--GGATA-AGG---TATGAG---T---T-CTTCT---C---AT-TATCTTT-GA-TTCTCA--CACTACT-ATATactgatttggaatgcgttttatcagtctctggtacatgcagtatgcgaagtctgccgctatgatttcctcaaatatcaactgacaca
gi|15 : gTTGACAACTTATC--GGATA-A-G---CA-TAG---T---T-C-TTT---TCT-ATTCA----T-GAGTTTTCAA---CTA----TCTA-TTTTGATAT-GCGAT-T--G-G-GC-ATA----ATATACAGGGAC-T--TCGAACAAA
gi|16 : AACTTATC--GGATA-A-G---TA-TAG---T---T-T-TTT---TCTAAT-CA----T-GAGTTTTCAACTATT-------TA-TTTTGATAT-GCGAT-T--G-GGA--ATA----ATATACACGGAT-T--TCGAACAAAactggattggatgcgtttcatcagt
gi|18 : aaA----T-GAGTTTTCAA---CTA----TATA-TTTTGATAT-GT-AT-TTGG-G-A--ATG----ATATACACGGAC-T--TCGATCAAAattgaattggat
gi|24 : A-TTTTGATAT-GCAATAT--A-C-AT-GTA----ATATACACGGAC-T--TTGAACAAAatagaatgggatgcgttttatcaatcttatac
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): AAAAAACTTTTCAATAGCGCACACTGATTTATGTAATTCGAAGAGGTATTTAATATAATACACTGAACTATCGCACTATCGATTAATTACGCACTGTTCCTTTTGTCGATTCCAACACAGAGGTATACATCATTTGATATTTTGTGCTTATGACTCAAACACTTAGT
Unaligned ( gi|10 ): TTCAATGGAAAAAACTTTCAATTTAGACATGCTTAACTGAAGTAAATTCTGATTACAGAAGAAGTTTTAAAATACCTGAACTAACGCACAACATTAACATGTACTGTTCCTTCGTGATTCCAACATAGAGACATACATGTATAATATTTTGTGCTTATAC
Unaligned ( gi|11 ): ATCCAATGGAAACTTTCAAGCTGACAATTATTAAAATGTAGATTGTGAAGAGTATTGAATGACAGTACCTGAAACAATTCGTACAAATTAACACTCACTTTCCTTGTGATCGCAGACAGAGTATACAGCTATATTAGTATTTTGTGCGTATACTA
Unaligned ( gi|22 ): GTGCATTTTCTCATTCTTGTTTGTACAAACAAATTGAAGTAGGCCATATTATTTCCTCAAATATTAGCTGACACAG
Unaligned ( gi|23 ): AGGTATTAAAATACCTGAACTATCGCACATCCTTCGTGATTCCAACACAGAGGTATACATACATTATATT
Unaligned ( gi|25 ): CATATCGAAGTGTTCCGTTCATTTCCTCAATATTAACTGACAC
Alignments
lowQualScore : 11 22222222 11 11111 22 1 22222 222 1111111 2222222222222222222222 11 11
lowQualScore : 5 66 66 888 0 00 4 4 1 4 1 777 8 4 4 2 99999999 5 5 5 33 33333 77 6 6 99 55 4 66 66 4 888 66 5 66 0 5 55 4 4 33333 111 777 4 8 7777777 4 7777 3 0000000000000000000000 3 3 55 3 3 33 8888 4 55
lowQualScore : . .. .. ... . .. . . . . . ... . . . . ........ . . . .. ..... .. . . .. .. . .. .. . ... .. . .. . . .. . . ..... ... ... . . ....... . .... . ...................... . . .. . . .. .... . ..
lowQualScore : 0 99 99 888 9 11 4 4 1 4 1 888 9 4 4 0 00000000 7 7 7 66 11111 99 7 7 22 55 4 11 99 4 222 99 0 99 0 0 55 0 0 55555 000 000 0 0 2222222 0 7777 6 5555555555555555555555 6 6 99 6 6 55 5555 0 55
consensus : NAACAAC-ACGGGTC--T--T---GTATTTTCT-CAAG-AACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCGG-ATATTTACGA-TGTACATACACAAGTATCTTGCA---GGTATCACAT-GCC-A-CGT--GCGAGTA----NTACCTGTACCTGTC--TT-GTCAAAACA-AA--GGATTTGCTTTCGGAATATATCTAA-TCAC--TGCTCAATTT--AGATTA-TGT--CTGCTCTGT--CCAAAA-CT--AT-CGAAG-TTTGACAACTTATC--GGATA-A-G---TAATAG---T---T-C-TCT---T---A-TCA----T-GAGTTCTCA--A--ACTA----T-ATATA-TTTTGATAT-GCGAT-T--G-G-A--ATA----ATATACACGGAC-T--TCGAACAAA
Reference ( family-2789 ) : NAACAAC-ACGGGTC--T--T---GTATTTTCT-CAAG-AACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCGG-ATATTTACGA-TGTACATACACAAGTATCTTGCA---GGTATCACAT-GCC-A-CGT--GCGAGTA----NTACCTGTACCTGTC--TT-GTCAAAACA-AA--GGATTTGCTTTCGGAATATATCTAA-TCAC--TGCTCAATTT--AGATTA-TGT--CTGCTCTGT--CCAAAA-CT--AT-CGAAG-TTTGACAACTTATC--GGATA-A-G---TAATAG---T---T-C-TCT---T---A-TCA----T-GAGTTCTCA--A--ACTA----T-ATATA-TTTTGATAT-GCGAT-T--G-G-A--ATA----ATATACACGGAC-T--TCGAACAAA
gi|1 : TATCTAA-TCAT--TGCTCATTTT--ATATTA-TGT--CTGTTCTTT--CCAAAA-CT--AT-CGAAG-TTTGACAACTTGTC--GGATA-A-GTATTAATAGTTCT---T-C-TCT---T---A-TCA----T-GAGTTCTC---A--AC-----------TA-TTTTGATAT-GCGAT-TG-G-G-A--ATA----ATATACACGGAC-T--TCGAACAAA
gi|12 : AA-AACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCGG-ATATTTAGGA-TGTACATACACAAGCA-CATGTATCTGGTATCACAT-GCC-A-CGT--GCGAGTA----ATACCTGTACCTGTT--TT-GTCAAAACA-AA--GGATTTGCTTTC-GAATATATCTAA-TCAC--TGCTCactgatttggatgcgttttatcagtcttgtacatgcatatcgaagtttgccgtatgatttcctcaaatatcaactgacacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacacttaaatgtggtacaagtatattcgccgactcaatatatttcacacctttttcaaacctattttgctagacgtccaagcttaggaaacttggggactctagttcttttgttgcgaaaaacccttcgaatttgcatggattaaacaaaagctccttcttaacaccgcgccgatcaataatacattttacccagattagcgagacacaaccctcgaatttgcgtggattttacagtgctcttttatttaaaaatttaagaaaagtttgatgaattaaagtggttctttatattttgaaaaaaatataacggcacgcacatgtctactatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccagtttgcaatggaaaaactttcaatagtgacacgattttatataattcttaagaagtattataatacctgaactatcgcacaacattaacacgcactgttcctttgtgattccaacatagaggtatatgtatacatatattatattttgtgcttatactaaacgctagta
gi|13 : AGCAAC--CGGGTCGTTAAT---GTATTTTTTACCAG---CAA-TTC-TTAGAATCAA-TTAGTG---GGGGCGG-ATATTTACGA-TGTACATACACATTGATCT-------GGT-TCACAT-GCCAA-CGT--GCGAGTA----T--CTTG--CCTGTCTTTT-TTTAAAACA-AA--GGATTTGt
gi|14 : taaAACAAC-ACGGGAC--C--T---GTATTTTAT-CAAG-AACAA-TTC-TTGGAATCAA-TTAGGC---GGAGCGG-ATATTTATCA-TGTACATACACAAGTATCT-------GGTATCGCAT-GCC-A-CAT--GCGAGTAGTACGTACCTGTACCTGTT--T
gi|15 : aaaacTTGACAACTTATC--GGATA-A-G---C-ATAG---T---T-C-TTTTC-T---ATTCA----T-GAGTTTTC---A--AC------T-ATCTA-TTTTGATAT-GCGAT-T--G-G-GC-ATA----ATATACAGGGAC-T--TCGAACAAA
gi|16 : AACTTATC--GGATA-A-G---TA-TAG---T---T-T-TTT---TCTAA-TCA----T-GAGTTTTCA--A---CTA----T--T-TA-TTTTGATAT-GCGAT-T--G-GGA--ATA----ATATACACGGAT-T--TCGAACAAAactggattggatgcgtttcatcagt
gi|17 : aaTA-TGTACTTGCTCTGT--CCAAAA-CCTAATGCGAAG-TTTGACTACTTATC--GGATA-AGG---TATGAG---T---T-CTTCT---C---A-TTATCTTT-GA-TTCTCA--C--ACTAC---T-ATATattgaattggat
gi|18 : gA----T-GAGTTTTCA--A---CTA----T-ATAT---TTTGATAT-GT-AT-TTGG-G-A--ATG----ATATACACGGAC-T--TCGATCAAA
gi|19 : AACAAC-AAGAGTC--T--T---GTGTTTTCT-CAAG-AA-AA-TTCCTTAGAATCAA-ATAG-T---GGAGCGG-ATATTTACGA-TGTACATACACAAATatagaatgggatgcgttttatcaatcttatac
gi|2 : aaaccTCACATTGCC-A-CGTCTGCGAGT-----TTA---ATACCTGTC--TT-GTCAAAACA-AAGGGGGTTTGCTTTCGAAA-ATATCTAACTCAC--TGCTCAATTT--AGATTA-TGT--CTGC-CTGT--CCAAGT-AT--AT-CGAAG--TTGAAACCTTATC--GGATA-A-A---T-ATAG---TTCAT-C-TCT---A---A-TCA----T-GAGTTTTC---A--ACTAATGTT-ATATATTTTTGATAT-GCGA--T--G-G-ATGATATAACATGTACAAGGACTT--TCGGACAAA
gi|20 : atAACAACTACGGGTC--T--TTTTGTATTTTCTTCAAG-AACAAATTCCTTGGAATCAATTTAGGCTCGGGAGCAGCATAGT----A-TGTACactgaattgcatgttttttatcaagtcttggaacacacttacatcaaatatcaactgacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgctt
gi|21 : aaaaacCAAC-ACGGGTT--T--T---GTATTT-----------------CCTTGGAATAAA-TTGACC---GGAGATG-ATATTTATGA-TGTACATACACAAGTATC
gi|24 : aaaagatA-TTTTGATAT-GCAATAT--A-C-AT-GTA----ATATACACGGAC-T--TTGAACAAA
gi|3 : AAAAAC-ACGTGTC--T--T---GT-TTTTCT-CAAG-AACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCAG-ATATTTATGA-TGTACATACACAAGTATTTTGCA---GGTATCACAT-ACC-A-CGT--GCGAGTA----CTACCTGTTCCTGTC--TT-GTCAAAACACAA--GGATTTGCTTTCAAAATGTATTTAA-TTAC--TACTT-ATTC--AGATTA-TGT--CTGCTTTGT--CCAAAA-CT--AT-CGAAG-TTTGACAATTTATC--GGATA-A-G---TAATAG---T---T-C-TCT---T---A-TCA----T-GAGTTCTCA--AGTACTAG---T-ATATA-TTTTGATAT-GCGAT-T--G-G-A--ATA----ATATACACGGAC-T--TCGAACAAAactga
gi|4 : aACAAC-A-GGGTC--T--T----TGTTTTC---AAGCAACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCGGGATATTTATGAATGTAC-TACAACAG-ATCT-GCA---GGTATCACAT-ACC-AACGTT-GCGAGTA----ATACCTGTACTGATC--TTCATCAAAACA-AA--GGATTTGCTTTC---ATATATCTCA-TCAC--TACTCAATTT--AGATTG-T-----TGCTTTGT--CCAAAA-CT--A--CGAAGTTTTGACAACTTATC--GGATA-A-G---T-ATAGTTCT---T-C-TCT---T---A-TCG----T-GAGTTCT-A--A--ACTA----T-ATA-A-TTTTGATAT-TCGAT-T--G-G-c
gi|5 : aaaacATCTAA-TCACATTGCTCATTTTTTA-ATTAGTGT---TGTTCTTTTTCCAAAAACT--ATCCGAAG-TTTGA-AACTTGTC--GGATG-A-ATATTAATAG---T---T-CTTCTCTAT---A-TCA----TGGAGTTCTCA--A--ACTA----T-------TTTTGATATCGCGAT-TG-G-G-A--ATA----AT-TACACGGAC-TTATCGAACAAA
gi|6 : ATGTCTAA-TAAC--TACTCAGTTT--AGATTA-TGT--CTGTTCTGT--CCAAAA--T--AT-CGAAG-TT---CAACTTA-CAGGGATACA-G----GAT-G---T---TGT-TCT---A---A-TCA----T-GATTTCTCAATA--ATTG----TGATA-A-TT---ATAT-GCGAT-T--GAG-T--ATA----GTAT-CAAGGAC-T--TCAAACAAAactgatttggaatgcgttttatcagtctctggtacatgcagtatgcgaagtctgccgctatgatttcctcaaatatcaactgacaca
gi|7 : AACAAC-ACGGGGC--T--T---GTATTTTCT-CAAA-AACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCGG-ATATTTATGA-TGTACATACACAGGTATC-TGCA---GGTATCACAT-GCC-A-CGC--GCGAGTA----ATACCTGTACCTGTC--TT-GTCAAAACA-AA--AGATTTGCTTTC-GAATATATCTAA-TCAC--TACTCAATTA--AGATTG-Tactgaattggtgtgttttctcagtcttgtgcacacaatatgatatcgaagtaggccgtttgagctcctcaaataccactgatacag
gi|8 : aaaacTTTCG-AATATATCTAA-TCAC--TACTAAATTT--TGATT---GT--CTGCTTTGT--CCTAAA-CT--AT-CGAGA-TTTGACAACTTACC--GGATA-A-G---T-ATAGTTCT---T-C-TCT---T---A-TCA----T-GAGTTCTC---A--ACTA----T-GTA-A-TTTTGATAT-TCGAT-TG-G-G-A--ATA----ATATACACAGAC-T--TCCAACAAttg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AAAAAACTTTTCAATAGCGCACACTGATTTATGTAATTCGAAGAGGTATTTAATATAATACACTGAACTATCGCACTATCGATTAATTACGCACTGTTCCTTTTGTCGATTCCAACACAGAGGTATACATCATTTGATATTTTGTGCTTATGACTCAAACACTTAGT
Unaligned ( gi|10 ): TTCAATGGAAAAAACTTTCAATTTAGACATGCTTAACTGAAGTAAATTCTGATTACAGAAGAAGTTTTAAAATACCTGAACTAACGCACAACATTAACATGTACTGTTCCTTCGTGATTCCAACATAGAGACATACATGTATAATATTTTGTGCTTATAC
Unaligned ( gi|11 ): ATCCAATGGAAACTTTCAAGCTGACAATTATTAAAATGTAGATTGTGAAGAGTATTGAATGACAGTACCTGAAACAATTCGTACAAATTAACACTCACTTTCCTTGTGATCGCAGACAGAGTATACAGCTATATTAGTATTTTGTGCGTATACTA
Unaligned ( gi|22 ): GTGCATTTTCTCATTCTTGTTTGTACAAACAAATTGAAGTAGGCCATATTATTTCCTCAAATATTAGCTGACACAG
Unaligned ( gi|23 ): AGGTATTAAAATACCTGAACTATCGCACATCCTTCGTGATTCCAACACAGAGGTATACATACATTATATT
Unaligned ( gi|25 ): CATATCGAAGTGTTCCGTTCATTTCCTCAATATTAACTGACAC
Alignments
lowQualScore : 11 22222222 11 11111 22 1 22222 222 1111111 2222222222222222222222 11 11
lowQualScore : 5 66 66 888 0 00 4 4 1 4 1 777 8 4 4 2 99999999 5 5 5 33 33333 77 6 6 99 55 4 66 66 4 888 66 5 66 0 5 55 4 4 33333 111 777 4 8 7777777 4 7777 3 0000000000000000000000 3 3 55 3 3 33 8888 4 55
lowQualScore : . .. .. ... . .. . . . . . ... . . . . ........ . . . .. ..... .. . . .. .. . .. .. . ... .. . .. . . .. . . ..... ... ... . . ....... . .... . ...................... . . .. . . .. .... . ..
lowQualScore : 0 99 99 888 9 11 4 4 1 4 1 888 9 4 4 0 00000000 7 7 7 66 11111 99 7 7 22 55 4 11 99 4 222 99 0 99 0 0 55 0 0 55555 000 000 0 0 2222222 0 7777 6 5555555555555555555555 6 6 99 6 6 55 5555 0 55
consensus : NAACAAC-ACGGGTC--T--T---GTATTTTCT-CAAG-AACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCGG-ATATTTACGA-TGTACATACACAAGTATCTTGCA---GGTATCACAT-GCC-A-CGT--GCGAGTA----NTACCTGTACCTGTC--TT-GTCAAAACA-AA--GGATTTGCTTTCGGAATATATCTAA-TCAC--TGCTCAATTT--AGATTA-TGT--CTGCTCTGT--CCAAAA-CT--AT-CGAAG-TTTGACAACTTATC--GGATA-A-G---TAATAG---T---T-C-TCT---T---A-TCA----T-GAGTTCTCA--A--ACTA----T-ATATA-TTTTGATAT-GCGAT-T--G-G-A--ATA----ATATACACGGAC-T--TCGAACAAA
Reference ( family-2789 ) : NAACAAC-ACGGGTC--T--T---GTATTTTCT-CAAG-AACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCGG-ATATTTACGA-TGTACATACACAAGTATCTTGCA---GGTATCACAT-GCC-A-CGT--GCGAGTA----NTACCTGTACCTGTC--TT-GTCAAAACA-AA--GGATTTGCTTTCGGAATATATCTAA-TCAC--TGCTCAATTT--AGATTA-TGT--CTGCTCTGT--CCAAAA-CT--AT-CGAAG-TTTGACAACTTATC--GGATA-A-G---TAATAG---T---T-C-TCT---T---A-TCA----T-GAGTTCTCA--A--ACTA----T-ATATA-TTTTGATAT-GCGAT-T--G-G-A--ATA----ATATACACGGAC-T--TCGAACAAA
gi|1 : TATCTAA-TCAT--TGCTCATTTT--ATATTA-TGT--CTGTTCTTT--CCAAAA-CT--AT-CGAAG-TTTGACAACTTGTC--GGATA-A-GTATTAATAGTTCT---T-C-TCT---T---A-TCA----T-GAGTTCTC---A--AC-----------TA-TTTTGATAT-GCGAT-TG-G-G-A--ATA----ATATACACGGAC-T--TCGAACAAA
gi|12 : AA-AACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCGG-ATATTTAGGA-TGTACATACACAAGCA-CATGTATCTGGTATCACAT-GCC-A-CGT--GCGAGTA----ATACCTGTACCTGTT--TT-GTCAAAACA-AA--GGATTTGCTTTC-GAATATATCTAA-TCAC--TGCTCactgatttggatgcgttttatcagtcttgtacatgcatatcgaagtttgccgtatgatttcctcaaatatcaactgacacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacacttaaatgtggtacaagtatattcgccgactcaatatatttcacacctttttcaaacctattttgctagacgtccaagcttaggaaacttggggactctagttcttttgttgcgaaaaacccttcgaatttgcatggattaaacaaaagctccttcttaacaccgcgccgatcaataatacattttacccagattagcgagacacaaccctcgaatttgcgtggattttacagtgctcttttatttaaaaatttaagaaaagtttgatgaattaaagtggttctttatattttgaaaaaaatataacggcacgcacatgtctactatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccagtttgcaatggaaaaactttcaatagtgacacgattttatataattcttaagaagtattataatacctgaactatcgcacaacattaacacgcactgttcctttgtgattccaacatagaggtatatgtatacatatattatattttgtgcttatactaaacgctagta
gi|13 : AGCAAC--CGGGTCGTTAAT---GTATTTTTTACCAG---CAA-TTC-TTAGAATCAA-TTAGTG---GGGGCGG-ATATTTACGA-TGTACATACACATTGATCT-------GGT-TCACAT-GCCAA-CGT--GCGAGTA----T--CTTG--CCTGTCTTTT-TTTAAAACA-AA--GGATTTGt
gi|14 : taaAACAAC-ACGGGAC--C--T---GTATTTTAT-CAAG-AACAA-TTC-TTGGAATCAA-TTAGGC---GGAGCGG-ATATTTATCA-TGTACATACACAAGTATCT-------GGTATCGCAT-GCC-A-CAT--GCGAGTAGTACGTACCTGTACCTGTT--T
gi|15 : aaaacTTGACAACTTATC--GGATA-A-G---C-ATAG---T---T-C-TTTTC-T---ATTCA----T-GAGTTTTC---A--AC------T-ATCTA-TTTTGATAT-GCGAT-T--G-G-GC-ATA----ATATACAGGGAC-T--TCGAACAAA
gi|16 : AACTTATC--GGATA-A-G---TA-TAG---T---T-T-TTT---TCTAA-TCA----T-GAGTTTTCA--A---CTA----T--T-TA-TTTTGATAT-GCGAT-T--G-GGA--ATA----ATATACACGGAT-T--TCGAACAAAactggattggatgcgtttcatcagt
gi|17 : aaTA-TGTACTTGCTCTGT--CCAAAA-CCTAATGCGAAG-TTTGACTACTTATC--GGATA-AGG---TATGAG---T---T-CTTCT---C---A-TTATCTTT-GA-TTCTCA--C--ACTAC---T-ATATattgaattggat
gi|18 : gA----T-GAGTTTTCA--A---CTA----T-ATAT---TTTGATAT-GT-AT-TTGG-G-A--ATG----ATATACACGGAC-T--TCGATCAAA
gi|19 : AACAAC-AAGAGTC--T--T---GTGTTTTCT-CAAG-AA-AA-TTCCTTAGAATCAA-ATAG-T---GGAGCGG-ATATTTACGA-TGTACATACACAAATatagaatgggatgcgttttatcaatcttatac
gi|2 : aaaccTCACATTGCC-A-CGTCTGCGAGT-----TTA---ATACCTGTC--TT-GTCAAAACA-AAGGGGGTTTGCTTTCGAAA-ATATCTAACTCAC--TGCTCAATTT--AGATTA-TGT--CTGC-CTGT--CCAAGT-AT--AT-CGAAG--TTGAAACCTTATC--GGATA-A-A---T-ATAG---TTCAT-C-TCT---A---A-TCA----T-GAGTTTTC---A--ACTAATGTT-ATATATTTTTGATAT-GCGA--T--G-G-ATGATATAACATGTACAAGGACTT--TCGGACAAA
gi|20 : atAACAACTACGGGTC--T--TTTTGTATTTTCTTCAAG-AACAAATTCCTTGGAATCAATTTAGGCTCGGGAGCAGCATAGT----A-TGTACactgaattgcatgttttttatcaagtcttggaacacacttacatcaaatatcaactgacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgctt
gi|21 : aaaaacCAAC-ACGGGTT--T--T---GTATTT-----------------CCTTGGAATAAA-TTGACC---GGAGATG-ATATTTATGA-TGTACATACACAAGTATC
gi|24 : aaaagatA-TTTTGATAT-GCAATAT--A-C-AT-GTA----ATATACACGGAC-T--TTGAACAAA
gi|3 : AAAAAC-ACGTGTC--T--T---GT-TTTTCT-CAAG-AACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCAG-ATATTTATGA-TGTACATACACAAGTATTTTGCA---GGTATCACAT-ACC-A-CGT--GCGAGTA----CTACCTGTTCCTGTC--TT-GTCAAAACACAA--GGATTTGCTTTCAAAATGTATTTAA-TTAC--TACTT-ATTC--AGATTA-TGT--CTGCTTTGT--CCAAAA-CT--AT-CGAAG-TTTGACAATTTATC--GGATA-A-G---TAATAG---T---T-C-TCT---T---A-TCA----T-GAGTTCTCA--AGTACTAG---T-ATATA-TTTTGATAT-GCGAT-T--G-G-A--ATA----ATATACACGGAC-T--TCGAACAAAactga
gi|4 : aACAAC-A-GGGTC--T--T----TGTTTTC---AAGCAACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCGGGATATTTATGAATGTAC-TACAACAG-ATCT-GCA---GGTATCACAT-ACC-AACGTT-GCGAGTA----ATACCTGTACTGATC--TTCATCAAAACA-AA--GGATTTGCTTTC---ATATATCTCA-TCAC--TACTCAATTT--AGATTG-T-----TGCTTTGT--CCAAAA-CT--A--CGAAGTTTTGACAACTTATC--GGATA-A-G---T-ATAGTTCT---T-C-TCT---T---A-TCG----T-GAGTTCT-A--A--ACTA----T-ATA-A-TTTTGATAT-TCGAT-T--G-G-c
gi|5 : aaaacATCTAA-TCACATTGCTCATTTTTTA-ATTAGTGT---TGTTCTTTTTCCAAAAACT--ATCCGAAG-TTTGA-AACTTGTC--GGATG-A-ATATTAATAG---T---T-CTTCTCTAT---A-TCA----TGGAGTTCTCA--A--ACTA----T-------TTTTGATATCGCGAT-TG-G-G-A--ATA----AT-TACACGGAC-TTATCGAACAAA
gi|6 : ATGTCTAA-TAAC--TACTCAGTTT--AGATTA-TGT--CTGTTCTGT--CCAAAA--T--AT-CGAAG-TT---CAACTTA-CAGGGATACA-G----GAT-G---T---TGT-TCT---A---A-TCA----T-GATTTCTCAATA--ATTG----TGATA-A-TT---ATAT-GCGAT-T--GAG-T--ATA----GTAT-CAAGGAC-T--TCAAACAAAactgatttggaatgcgttttatcagtctctggtacatgcagtatgcgaagtctgccgctatgatttcctcaaatatcaactgacaca
gi|7 : AACAAC-ACGGGGC--T--T---GTATTTTCT-CAAA-AACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCGG-ATATTTATGA-TGTACATACACAGGTATC-TGCA---GGTATCACAT-GCC-A-CGC--GCGAGTA----ATACCTGTACCTGTC--TT-GTCAAAACA-AA--AGATTTGCTTTC-GAATATATCTAA-TCAC--TACTCAATTA--AGATTG-Tactgaattggtgtgttttctcagtcttgtgcacacaatatgatatcgaagtaggccgtttgagctcctcaaataccactgatacag
gi|8 : aaaacTTTCG-AATATATCTAA-TCAC--TACTAAATTT--TGATT---GT--CTGCTTTGT--CCTAAA-CT--AT-CGAGA-TTTGACAACTTACC--GGATA-A-G---T-ATAGTTCT---T-C-TCT---T---A-TCA----T-GAGTTCTC---A--ACTA----T-GTA-A-TTTTGATAT-TCGAT-TG-G-G-A--ATA----ATATACACAGAC-T--TCCAACAAttg
blockSeqs : T . . TTT TT C A C T T TCG C C A G TTGCA T A A CT GTACG TT C C GG GA C AT TT G ACT TT A TA G T AG C G TATTA TTC TCA G T TCTA T TCTT G AACTAATGTTATATAT C A TG A G TG TAAC T TA
blockSeqs : . . . . T . . C . G . G T . T TGCA . . . T T . . . . AA . . . . C . . . C . . . . TA TTC . . T CTAT . . . AAGTACTAGTATATA . . G . . C . . .
blockSeqs : . . . . T . . C . G . . C . T TGCA . . . . T . . . . G . . . . C . . . . . . . . TA . . . . TCT . . . AATAATTGTGATAA . . G . . T . . .
blockSeqs : . . . . T . . C . C . . T . T T . . . . C . . . . G . . . . C . . . . . . . . TA . . . . C . . . AAACTATATAA . . . . . . . . .
blockSeqs : . . . . T . . C . G . . T . T T . . . . A . . . . . . . . . C . . . . . . . . C . . . . A . . . AACTATATAT . . . . . . . . .
blockSeqs : . . . . . . . C . G . . T . T . . . . A . . . . . . . . . . . . . . T . . . . T . . . AACTATGTAA . . . . . . . . .
blockSeqs : . . . . . . . . . G . . T . . . . . . . . . . . . . . . T . . . . T . . . AACTATCTA . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . G . . . . A . . . AACTATTTA . . . . . . . . .
blockSeqs : . . . T . . . . T . . . AAACTAT . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : ** ** T* TGCA**** G* T**** *** AACTATATAN************ **
originalCons : NAACAAC-ACGGGTC--T--T---GTATTTTCT-CAAG-AACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCGG-ATATTTACGA-TGTACATACACAAGTATCTTGCA---GGTATCACAT-GCC-A-CGT--GCGAGTA----NTACCTGTACCTGTC--TT-GTCAAAACA-AA--GGATTTGCTTTCGGAATATATCTAA-TCAC--TGCTCAATTT--AGATTA-TGT--CTGCTCTGT--CCAAAA-CT--AT-CGAAG-TTTGACAACTTATC--GGATA-A-G---TAATAG---T---T-C-TCT---T---A-TCA----T-GAGTTCTCA--A--ACTA----T-ATATA-TTTTGATAT-GCGAT-T--G-G-A--ATA----ATATACACGGAC-T--TCGAACAAA
finalCons : NAACAAC-ACGGGTC--T--T---GTATTTTCT-CAAG-AACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCGG-ATATTTACGA-TGTACATACACAAGTATCTGCA----GGTATCACAT-GCC-A-CGT--GCGAGTA----NTACCTGTACCTGTC--TT-GTCAAAACA-AA--GGATTTGCTTTCG-AATATATCTAA-TCAC--TGCTCAATTT--AGATTA-TGT--CTGCTCTGT--CCAAAA-CT--AT-CGAAG-TTTGACAACTTATC--GGATA-A-GT----ATAG---T---T-C-TCT---T---A-TCA----T-GAGTTCTCAACTATATAN------------TTTTGATAT-GCGAT-T--G-G-A--ATA----ATATACACGGAC-T--TCGAACAAA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AAAAAACTTTTCAATAGCGCACACTGATTTATGTAATTCGAAGAGGTATTTAATATAATACACTGAACTATCGCACTATCGATTAATTACGCACTGTTCCTTTTGTCGATTCCAACACAGAGGTATACATCATTTGATATTTTGTGCTTATGACTCAAACACTTAGT
Unaligned ( gi|10 ): TTCAATGGAAAAAACTTTCAATTTAGACATGCTTAACTGAAGTAAATTCTGATTACAGAAGAAGTTTTAAAATACCTGAACTAACGCACAACATTAACATGTACTGTTCCTTCGTGATTCCAACATAGAGACATACATGTATAATATTTTGTGCTTATAC
Unaligned ( gi|11 ): ATCCAATGGAAACTTTCAAGCTGACAATTATTAAAATGTAGATTGTGAAGAGTATTGAATGACAGTACCTGAAACAATTCGTACAAATTAACACTCACTTTCCTTGTGATCGCAGACAGAGTATACAGCTATATTAGTATTTTGTGCGTATACTA
Unaligned ( gi|22 ): GTGCATTTTCTCATTCTTGTTTGTACAAACAAATTGAAGTAGGCCATATTATTTCCTCAAATATTAGCTGACACAG
Unaligned ( gi|23 ): AGGTATTAAAATACCTGAACTATCGCACATCCTTCGTGATTCCAACACAGAGGTATACATACATTATATT
Unaligned ( gi|25 ): CATATCGAAGTGTTCCGTTCATTTCCTCAATATTAACTGACAC
Alignments
lowQualScore : 11 111111 11 11111 1 2222 222 1111111 1111 111111 222222222 11 11
lowQualScore : 5 66 66 888 0 00 4 4 1 4 1 777 8 4 4 2 5 888888 5 5 5 33 33333 77 6 6 99 77 4 66 66 4 888 66 5 66 0 5 55 4 4 1111 4 111 777 4 8 7777777 4 7777 3 3 4444 000000 3 111111111 3 3 55 3 3 33 8888 4 55
lowQualScore : . .. .. ... . .. . . . . . ... . . . . . ...... . . . .. ..... .. . . .. .. . .. .. . ... .. . .. . . .. . . .... . ... ... . . ....... . .... . . .... ...... . ......... . . .. . . .. .... . ..
lowQualScore : 0 99 99 888 9 11 4 4 1 4 1 888 9 4 4 0 7 333333 7 7 7 66 11111 99 7 7 22 77 4 11 99 4 222 99 0 99 0 0 55 0 0 0000 0 000 000 0 0 2222222 0 7777 6 6 1111 555555 6 999999999 6 6 99 6 6 55 5555 0 55
consensus : NAACAAC-ACGGGTC--T--T---GTATTTTCT-CAAG-AACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCGG-ATATTTACGA-TGTACATACACAAGTA-TCTGCA---GGTATCACAT-GCC-A-CGT--GCGAGTA----NTACCTGTACCTGTC--TT-GTCAAAACA-AAGGA--TTTGCTTTC-GAATATATCTAA-TCAC--TGCTCAATTT--AGATTA-TGT--CTGCTCTGT--CCAAAA-CT--AT-CGAAG-TTTGACAACTTATC--GGATA-A-GT----AT-AG---T---T-C-TCT---T---A-TCA----T-GAGTTCTC-A----AC------TA-T----ATA-ATTTTGATAT-GCGAT-T--G-G-A--ATA----ATATACACGGAC-T--TCGAACAAA
Reference ( family-2789 ) : NAACAAC-ACGGGTC--T--T---GTATTTTCT-CAAG-AACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCGG-ATATTTACGA-TGTACATACACAAGTA-TCTGCA---GGTATCACAT-GCC-A-CGT--GCGAGTA----NTACCTGTACCTGTC--TT-GTCAAAACA-AAGGA--TTTGCTTTC-GAATATATCTAA-TCAC--TGCTCAATTT--AGATTA-TGT--CTGCTCTGT--CCAAAA-CT--AT-CGAAG-TTTGACAACTTATC--GGATA-A-GT----AT-AG---T---T-C-TCT---T---A-TCA----T-GAGTTCTC-A----AC------TA-T----ATA-NTTTTGATAT-GCGAT-T--G-G-A--ATA----ATATACACGGAC-T--TCGAACAAA
gi|1 : TATCTAA-TCAT--TGCTCATTTT--ATATTA-TGT--CTGTTCTTT--CCAAAA-CT--AT-CGAAG-TTTGACAACTTGTC--GGATA-A-GTATTAAT-AGTTCT---T-C-TCT---T---A-TCA----T-GAGTTCTC-A----AC------TA-----------TTTTGATAT-GCGAT-TG-G-G-A--ATA----ATATACACGGAC-T--TCGAACAAA
gi|12 : AA-AACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCGG-ATATTTAGGA-TGTACATACACAAGCA-CATGTATCTGGTATCACAT-GCC-A-CGT--GCGAGTA----ATACCTGTACCTGTT--TT-GTCAAAACA-AAGGA--TTTGCTTTC-GAATATATCTAA-TCAC--TGCTCactgatttggatgcgttttatcagtcttgtacatgcatatcgaagtttgccgtatgatttcctcaaatatcaactgacacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacacttaaatgtggtacaagtatattcgccgactcaatatatttcacacctttttcaaacctattttgctagacgtccaagcttaggaaacttggggactctagttcttttgttgcgaaaaacccttcgaatttgcatggattaaacaaaagctccttcttaacaccgcgccgatcaataatacattttacccagattagcgagacacaaccctcgaatttgcgtggattttacagtgctcttttatttaaaaatttaagaaaagtttgatgaattaaagtggttctttatattttgaaaaaaatataacggcacgcacatgtctactatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccagtttgcaatggaaaaactttcaatagtgacacgattttatataattcttaagaagtattataatacctgaactatcgcacaacattaacacgcactgttcctttgtgattccaacatagaggtatatgtatacatatattatattttgtgcttatactaaacgctagta
gi|13 : AGCAAC--CGGGTCGTTAAT---GTATTTTTTACCAG---CAA-TTC-TTAGAATCAA-TTAGTG---GGGGCGG-ATATTTACGA-TGTACATACACATTGA-TCT------GGT-TCACAT-GCCAA-CGT--GCGAGTA----T--CTTG--CCTGTCTTTT-TTTAAAACA-AAGGA--TTTGt
gi|14 : taaAACAAC-ACGGGAC--C--T---GTATTTTAT-CAAG-AACAA-TTC-TTGGAATCAA-TTAGGC---GGAGCGG-ATATTTATCA-TGTACATACACAAGTA-TCT------GGTATCGCAT-GCC-A-CAT--GCGAGTAGTACGTACCTGTACCTGTT--T
gi|15 : aaaacTTGACAACTTATC--GGATA-A-GC----AT-AG---T---T-C-TTTTC-T---ATTCA----T-GAGTTTTC-A----AC------TA-T----CTA--TTTTGATAT-GCGAT-T--G-G-GC-ATA----ATATACAGGGAC-T--TCGAACAAA
gi|16 : AACTTATC--GGATA-A-GT----AT-AG---T---T-T-TTT---TCTAA-TCA----T-GAGTTTTC-A----AC------TA-T----TTA--TTTTGATAT-GCGAT-T--G-GGA--ATA----ATATACACGGAT-T--TCGAACAAAactggattggatgcgtttcatcagt
gi|17 : aaTA-TGTACTTGCTCTGT--CCAAAA-CCTAATGCGAAG-TTTGACTACTTATC--GGATA-AGGT----ATGAG---T---T-CTTCT---C---A-TTATCTTT-GA-TTCTC-ACACTAC------TA-T----ATattgaattggat
gi|18 : gA----T-GAGTTTTC-A----AC------TA-T----ATA--TTTTGATAT-GT-AT-TTGG-G-A--ATG----ATATACACGGAC-T--TCGATCAAA
gi|19 : AACAAC-AAGAGTC--T--T---GTGTTTTCT-CAAG-AA-AA-TTCCTTAGAATCAA-ATAG-T---GGAGCGG-ATATTTACGA-TGTACATACACAAATatagaatgggatgcgttttatcaatcttatac
gi|2 : aaaccTCACATTGCC-A-CGTCTGCGAGT-----TTA---ATACCTGTC--TT-GTCAAAACA-AAGGGGGTTTGCTTTC-GAAAATATCTAACTCAC--TGCTCAATTT--AGATTA-TGT--CTGC-CTGT--CCAAGT-AT--AT-CGAAG--TTGAAACCTTATC--GGATA-A-AT----AT-AG---TTCAT-C-TCT---A---A-TCA----T-GAGTTTTC-A----ACTAATGTTA-T----ATA-TTTTTGATAT-GCGA--T--G-G-ATGATATAACATGTACAAGGACTT--TCGGACAAA
gi|20 : atAACAACTACGGGTC--T--TTTTGTATTTTCTTCAAG-AACAAATTCCTTGGAATCAATTTAGGCTCGGGAGCAGCATAGT----A-TGTACactgaattgcatgttttttatcaagtcttggaacacacttacatcaaatatcaactgacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgctt
gi|21 : aaaaacCAAC-ACGGGTT--T--T---GTATTT-----------------CCTTGGAATAAA-TTGACC---GGAGATG-ATATTTATGA-TGTACATACACAAGTA-TC
gi|24 : aaaagatTTTTGATAT-GCAATAT--A-C-AT-GTA----ATATACACGGAC-T--TTGAACAAA
gi|3 : aAAAAAC-ACGTGTC--T--T---GT-TTTTCT-CAAG-AACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCAG-ATATTTATGA-TGTACATACACAAGTATTTTGCA---GGTATCACAT-ACC-A-CGT--GCGAGTA----CTACCTGTTCCTGTC--TT-GTCAAAACACAAGGA--TTTGCTTTCAAAATGTATTTAA-TTAC--TACTT-ATTC--AGATTA-TGT--CTGCTTTGT--CCAAAA-CT--AT-CGAAG-TTTGACAATTTATC--GGATA-A-GTA---AT-AG---T---T-C-TCT---T---A-TCA----T-GAGTTCTC-AAGT-AC------TAGT----ATATATTTTGATAT-GCGAT-T--G-G-A--ATA----ATATACACGGAC-T--TCGAACAAAactga
gi|4 : aACAAC-A-GGGTC--T--T----TGTTTTC---AAGCAACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCGGGATATTTATGAATGTAC-TACAACAG-A-TCTGCA---GGTATCACAT-ACC-AACGTT-GCGAGTA----ATACCTGTACTGATC--TTCATCAAAACA-AAGGA--TTTGCTTTC---ATATATCTCA-TCAC--TACTCAATTT--AGATTG-T-----TGCTTTGT--CCAAAA-CT--A--CGAAGTTTTGACAACTTATC--GGATA-A-GT----AT-AGTTCT---T-C-TCT---T---A-TCG----T-GAGTTCTA-A----AC------TA-T----ATA-ATTTTGATAT-TCGAT-T--G-G-c
gi|5 : aaaacATCTAA-TCACATTGCTCATTTTTTA-ATTAGTGT---TGTTCTTTTTCCAAAAACT--ATCCGAAG-TTTGA-AACTTGTC--GGATG-A-ATATTAAT-AG---T---T-CTTCTCTAT---A-TCA----TGGAGTTCTCAA----AC------TA-T---------TTTTGATATCGCGAT-TG-G-G-A--ATA----AT-TACACGGAC-TTATCGAACAAA
gi|6 : ATGTCTAA-TAAC--TACTCAGTTT--AGATTA-TGT--CTGTTCTGT--CCAAAA--T--AT-CGAAG-TT---CAACTTA-CAGGGATACA-GG----AT--G---T---TGT-TCT---A---A-TCA----T-GATTTCTC-A----AT------AA-TTGTGATA-ATT---ATAT-GCGAT-T--GAG-T--ATA----GTAT-CAAGGAC-T--TCAAACAAAactgatttggaatgcgttttatcagtctctggtacatgcagtatgcgaagtctgccgctatgatttcctcaaatatcaactgacaca
gi|7 : AACAAC-ACGGGGC--T--T---GTATTTTCT-CAAA-AACAA-TTCCTTGGAATCAA-TTAGGC---GGAGCGG-ATATTTATGA-TGTACATACACAGGTA-TCTGCA---GGTATCACAT-GCC-A-CGC--GCGAGTA----ATACCTGTACCTGTC--TT-GTCAAAACA-AAAGA--TTTGCTTTC-GAATATATCTAA-TCAC--TACTCAATTA--AGATTG-Tactgaattggtgtgttttctcagtcttgtgcacacaatatgatatcgaagtaggccgtttgagctcctcaaataccactgatacag
gi|8 : aaaacTTTC-GAATATATCTAA-TCAC--TACTAAATTT--TGATT---GT--CTGCTTTGT--CCTAAA-CT--AT-CGAGA-TTTGACAACTTACC--GGATA-A-GT----AT-AGTTCT---T-C-TCT---T---A-TCA----T-GAGTTCTC-A----AC------TA-T----GTA-ATTTTGATAT-TCGAT-TG-G-G-A--ATA----ATATACACAGAC-T--TCCAACAAttg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AAAAAACTTTTCAATAGCGCACACTGATTTATGTAATTCGAAGAGGTATTTAATATAATACACTGAACTATCGCACTATCGATTAATTACGCACTGTTCCTTTTGTCGATTCCAACACAGAGGTATACATCATTTGATATTTTGTGCTTATGACTCAAACACTTAGT
Unaligned ( gi|10 ): TTCAATGGAAAAAACTTTCAATTTAGACATGCTTAACTGAAGTAAATTCTGATTACAGAAGAAGTTTTAAAATACCTGAACTAACGCACAACATTAACATGTACTGTTCCTTCGTGATTCCAACATAGAGACATACATGTATAATATTTTGTGCTTATAC
Unaligned ( gi|11 ): ATCCAATGGAAACTTTCAAGCTGACAATTATTAAAATGTAGATTGTGAAGAGTATTGAATGACAGTACCTGAAACAATTCGTACAAATTAACACTCACTTTCCTTGTGATCGCAGACAGAGTATACAGCTATATTAGTATTTTGTGCGTATACTA
Unaligned ( gi|22 ): GTGCATTTTCTCATTCTTGTTTGTACAAACAAATTGAAGTAGGCCATATTATTTCCTCAAATATTAGCTGACACAG
Unaligned ( gi|23 ): AGGTATTAAAATACCTGAACTATCGCACATCCTTCGTGATTCCAACACAGAGGTATACATACATTATATT
Unaligned ( gi|25 ): CATATCGAAGTGTTCCGTTCATTTCCTCAATATTAACTGACAC