lowQualScore : 1111111111111111111111111111111111111111111111111 11111111111111111111111111 111111111111111111111111111111111111111111111 11111111111111 2222222222222 22222222222222 22222222222222222222222
lowQualScore : 4 4 44 4 4 222 4 2 2222222222222222222222222222222222222222222222222 1 1111 1 2222 3 1111 3333333333 2 666666 44 666 33 4 1 2 333 777777777777777 4 22222222222222222222222222 333333333 11 1 11 222 1 1 22222222 111111 1111 1111 1 1 11 1 44444444 11 1 222222 11 444444444444444444444444444444444444444444444 111 11 444444444 6666666666666666666666666 5555555555 44444444444 22222 1 222222 333 55555555555555555 555555555555555 1 22 1 11 1 1 1 33333 1 33 11 1 1 22222222222222 11 1 1 1 44 222 1 22 2222222222222 1 1 33333333333333 1 1 1 1 1 1 1 777 1 00000000000000000000000 1 9999999999999 4 4 55555 1 4 777 2 1 2 2 11 1 222 2 1 1 2 666 1 333333 1 22 11 222 11 1 1
lowQualScore : 2 0 2 2 0 66 0 0 6 333 0 6 6 6 6666666666666666666666666666666666666666666666666 0 4444 0 3 7777 99 3 4444 6666666666 6 6 8 555555 00 111 2 88 1 0 99 0 0 6 1 0 0 111 1 999999999999999 0 88888888888888888888888888 8 5 777777777 1 77 33 1 6 3 4 0 2 33 999 2 6 4 0 3 0 3 9 2 44444444 999999 6 5 1111 1 3 1111 6 4 6 2 0 44 2 88 3 0 6 8 22222222 33 0 111111 00 2 111111111111111111111111111111111111111111111 99 8 3 777 3 00 4 444444444 2 2 3 8888888888888888888888888 2 4444444444 22222222222 3 55555 3 0 888888 6 000 33333333333333333 3 111111111111111 2 3 88 999 4 5 55 2 66 9 77 6 2 1 88 7 7 6 5 33333 5 00 6 22 7 5 11111111111111 6 4 6 2 22 4 7 6 7 6 5 6 6 66 6 6 999 5 11 6 0000000000000 5 5 6 6 6 55555555555555 6 5 7 5 5 6 5 5 5 000 5 44444444444444444444444 5 6 6 7777777777777 0 6 6 0 6 22222 5 0 111 0 7 0 6 6 6 6 3 0 6 6 22 5 6 999 0 5 6 5 7 6 6 111 5 555555 5 11 6 22 6 444 1 8 44 5 1 6
lowQualScore : . . . . . .. . . . ... . . . . ................................................. . .... . . .... .. . .... .......... . . . ...... .. ... . .. . . .. . . . . . . ... . ............... . .......................... . . ......... . .. .. . . . . . . .. ... . . . . . . . . . ........ ...... . . .... . . .... . . . . . .. . .. . . . . ........ .. . ...... .. . ............................................. .. . . ... . .. . ......... . . . ......................... . .......... ........... . ..... . . ...... . ... ................. . ............... . . .. ... . . .. . .. . .. . . . .. . . . . ..... . .. . .. . . .............. . . . . .. . . . . . . . . .. . . ... . .. . ............. . . . . . .............. . . . . . . . . . ... . ....................... . . . ............. . . . . . ..... . . ... . . . . . . . . . . . .. . . ... . . . . . . . ... . ...... . .. . .. . ... . . .. . . .
lowQualScore : 5 0 5 5 0 00 0 0 0 333 0 7 7 7 7777777777777777777777777777777777777777777777777 0 8888 0 2 5555 22 3 2222 0000000000 7 7 0 000000 00 000 8 44 8 8 22 0 0 7 0 7 7 000 2 555555555555555 0 00000000000000000000000000 0 6 000000000 8 55 33 7 0 2 5 2 5 88 888 5 0 0 0 2 0 2 5 5 22222222 222222 0 7 6666 0 3 3333 7 0 0 5 0 55 5 55 2 0 0 8 22222222 88 0 555555 00 0 555555555555555555555555555555555555555555555 22 0 2 555 2 88 2 222222222 2 5 2 8888888888888888888888888 5 8888888888 00000000000 0 00000 2 0 888888 5 555 00000000000000000 0 000000000000000 5 0 55 000 0 0 55 5 55 0 55 0 5 5 55 0 0 0 0 00000 0 00 0 00 0 0 00000000000000 0 0 0 5 00 0 0 0 0 0 0 0 0 00 0 0 000 0 00 0 0000000000000 0 0 0 0 0 00000000000000 0 0 0 0 0 0 0 0 0 000 0 00000000000000000000000 0 0 0 0000000000000 0 0 0 0 0 00000 0 0 000 0 0 0 0 0 0 0 0 0 0 0 00 0 0 000 0 0 0 0 5 0 0 000 5 555555 0 00 0 00 0 000 0 3 00 7 0 3
consensus : CGTGTTCCTCTTCAGATANGAGGCCAGCAAATCAATGCCACTATCGATACAGCTGCANACATCANTATTACCTCGGGGGAGGTTTATA-GGTCACTGAGGCCCCGGCCCGAGATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGATGACTGCGCGGTATCTTGGAAGTCTTAATCCGAGAATC---GGGG---ACTA---TGACT-TTGCGCA---CCCGA-TATATGTTGGCCCCT-TACA--A-GATGA-CAT----TTAC--TAGGAATAGATTTC----CTGCG-------TGCACATGGTG-CCGAAG-TTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGGCATAAACGCGACCTTTGAACTGAGTACCGAAGCGNCACTGCCAGTATTCGATGCGTTTTCGGCCCGC-AGGGTGCGAG-TTCCTCCGCACACCGCGCAGGTGATTG-AATGTGACTTGAGCGCAGATATGCCAGGAACTTTATA---CTGGAGCCTGCCAGC-ATTTTCCCGCCTGGCGTAGTAGCTTCGCGGNCGTANNNTNNCGG-CATAGTAGCTTCACGGACTTATAATGCCGCAGGTAAGAGAGCTAAGCTGTACGTTCTTAACCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGGGGAAACTGCCCCTGCTGTGTCGGTT--GAACGCACCGACCCCAAAGTGCGCCGTGTGTTNGTTG-AGGGGGAAA-CACTTNTCAGCACATAGCCCCGCTCTTGGAAC--------AGGT------AGGGAAGAGCGC-GCC---TGTGGAGGTCAAGTCTGA-GCTTTG-GAGCTAGTCGAGGAGTTTGCGGACGTCTTTGCAGTAGATGACCTTGACCTC-GGAAANTTTTCCAAGACCGAGCATCGNATTGACACTG-GCGATGCACTACCCGTT--N----AACAG--CGGA-TGCGCNGCGNTCCNGCCGTGTTCTGGGGGGA-A---G---AAG---G--TC------ATTTAGACAACATGCT--GAAGGCCGGAGTCATTCGG--CC-ATCT---TCTTCG-GACTGGGCGTCAGCACCGGT-CTGGTCAGGAAGAAGGATGGTAGTGTTT-GCTGGTACGTG----TGC-GTGGACTACAG-GTCCTTGA-ACAAGGTGAGT-GT-TA---ACGCGNA-----CCCTTTAC-CACT------CATCGANGAGTGTATGGACGCCCTNGNTGGAAACCGTCGGTTCACCTCGGTACGCTAGACATGGCGNAATGTGGCCTGTTGNCAGATNGAGGTGGNCCNNNANGACCGNNANAANNCGGCCTTCGTAACGAAATATGGCTTATTCGAATTCACACGAGAGTGGGTTTCGGTCTGTGTAACGCCCCGGCGACCTTCGCTANGGNCACCNATCTGGTGTTGCACAGACTGAACTGGAAAAAAGCTTTAGCATTCCTGGACGATGTTTTGTTTCTGGGAACTTCAGACCGGGCTCATGTAGATAACTTCCGACAGTTGTGTTTTTTTTAGCGATTCCGAGAATATGGCCTCAAATTTAAACCTCGGAAATGTGAGCTANTTAAANTTAGGGTCGAGTTCTCGGGCAGANCAGTGAGTGAGCACGGATTCGAGATGGGGGACTAGTACATCGAAGCAGCACGTGGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGACTCCGCTATATGCGGCAACTGGAAAAAAAGGTGTCCGATGGAGAGAT-------------CCTTTGAGGACCTCCTTAGGTCGATAAATAATCCTCCAGTAT--------------AGTCAAGGTCATTTTATTCTGGACACTCATGCCTCGGATCATGCCGTCGGCGGGGAATTAAGTCAAGTCCAGAACGGGAACGATAGAACAATAGGTTATGGCAGCGCTCAAGTGCTATCACCATGGTTGATGCAACCACCGACTATTTGTAACACCAGGAAAGAGTTGC-GGCGGGTGCAATTCAAATTTACTTTGCCAATTTCAGCCACTACCTGACTTAGGCACGGAATTACACAGTCACAGGACCGATCATCATAGCCTGGTTTGGCTGAATGAATTTCAAGGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCTAATGCGCTATCCAGGGATATATTGGACACNTGTCAGAGCATACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCAGTGGAGGCAGGTACTGCCACCATATGCACTGAACGCTGGCATGAGTTTAACACCGAGGTCCACAATGTGATTCCCTAATGTCTCAGTTGTTTGCTCGGGAATCGCCTGGGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCATTGAG-ATACTAGGCTCCACT
Reference ( gi|1 ) : CGTGTTCCTCTTCAGATAGGAGGCCAGCAAATCAATGCCACTATC-ATACAGCTGCAGACATCACTATTATCTCGGGG-AGGTTTATGTGGTCA-TGAGGCCC-GGCCCGAAATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGAT-ACTGCGCAGTATCTGGGAAGTCTTA-TCTGA-AATC---GG-----ACT----TGA---TTG-ACA---CC-GA-TAT--GTTGGCCCTT-TACA--A-GATGA-CAT----TTAC--TAGGAA-AGATTTC----CTGCG-------TG-ACATGGTG-C-GAAG-TT-CA---GTGAAGCGCGGAAACGCTCAAG--TAAGGGCATAGATA-GACCTTTAAACTGAGTACCGAAGCAGCACTGCCAGTATTCGATGCATTTTCGGCCCGCTAGGGTGCGAG-TTCC-CCGCATACCGCGCAGGTGATTG-A-TGTGACTTGAGCGCAGATATGCC-G--AC-TTATAACTCTGGAGCCTGCCAGCGATTTTCCCGCCTGGCGNNNNNNNNNNNNNNNNNNNNNNNNNCGG-CATAGTAGCTTCACTGATTTATAATGTCGCAGGTAAGAGAGCTAAACTGTGCGTTCTTAACCCAACAGACAGGAGCTACATTTTTAAGACAGGTACCAAAGTAGGGGAAACTGTCCCTGCTGTGTCGGTT--GAACGTCCCGATCCCAAAGTGCACCGTGTGTTTGTTG-AGGGGGAAA-CACTTTTCAGCACATAGCCCCGCTCTTGGAAC--------AGGT------AGGGAAGAACGC-GCC---TGTGGAGGTTAGGTCTGAGGCTTTA-GAGCTAGTCAAGGAGTTTGCGGAAGTCTTTGCAGTAGATGACCTTGACCTC-GGAATTTTTTCCAAGATCGAGCATCACATTGACACTG-GCAATGCACTCCCCGTT--T----AACAG--CGGA-TGCGCCATACCCCAACCGTGTTCCAGGGAGA-A---G---AAG--TA--TC------AT---------ATGCTTGAAAGGCCGGAGTCATTCAG--CC-ATCT---TCTTCA-GACTGGGCGTCAGCACCAGTCCTGGTTAGGAAGAAGGATGGTAGTG-TT-GCTGA---GTG----TGCTGTGGACTACAG-G-CCTTG--ACAAGGTGACT-GT-TG---ACACGTA-----CCCTTTAC-CACT------CATCGAGGAGTGTATGGACACCCTATTTGGAAACCGCTGGTTT---TCG--AAGTTAGAC---GC-CAATGCGGCCTATTGGCAGATTGAAATAGCTCCAGAAGACAGGAAGAAGACAGCCTTTATAACAAAATATGGCTTATTCGAATTCAC--GAGAATGGGTTTTGGTCTGTGTAACGCCCCGGCGACTTTCGCTAGGGTCATCAATCTGGTGTTGCACAGACTGAACTGGAAAATAGCTATGGCATTCCTTGACGATGTTTTAGTGTTGGGAACGTCAGCACGAGTCCATGAAGATAACTTGCGACAA----GTTCTTG--AGTGATTCCGAGAATATGGCCTCAAATTTAAACCTCGGAAATGTGAGCTATTCAAACTTAAGGTTGAGTTCTTGGATAGAACAGTGTGTGAGCATGGAATCGAGATGGGGGACCAGTACATAGAAGCAGTACGTGACTGGCCTGTGCCCTGTGATGTGAAGGGTGTTGAGCGATTTTTAGGTTTCGCCAACTACCATCGCAGTTATATTCCCCAGTTTTTTTGTATTGCTG-TTCCGCTGTATGCGGTAACTGGAAAAGGTGGTTTCCCGTGGGGAGATGACCAACAGGATGCCTTTGACGAACTCCTTAGGTTGATGAATAATCCTCCGGTATTAGCAATCCCGAATAGTCAAGGTCATTTTATTCTGGACATTGATGCCTCGGTTCATGCCGTAGGCGTGGAATTGAGTCAAGTCCAGAACGGGAAAGAGAGAACAATCGGTTATGGCAGCGC---AGTGCTATCAGCAGAG-------AATTGGCGG-TA-TTGTACCACCAGGGAGGAGTTGCTGGC-GGTG-A--TCAAATTTAC-TCGCCAATTCC-GTCACTACCTG-CTT-GGCAGGGAATT-CACAGT-A-AGGACCGATCATCATAGCCTGGTTTGGCTG-ATGAAATTCAA-GCATCCGCAAAATCAGATAGCTCGCTGGCTAGAAGAACTAAGCCAGTACAACATGCGGATTATCCATCGCCTAGGGAGGAAGCATTTGAATGTTGATGTGCTATCCAGGGACATATTGGACACATGTCAGAGC-TACTCTACTAAAGTTCGGTTAGAGGATTTGCCTTGCGATGGATGCAGGTACTGCCGCCAAGCGCA-TGCACGCTGGCATGAGTTTGACACCGAGTTCGACGATGTAATTCCCC--TGTCTCAGTTGTT---TCAGGAATCGCCTGGGAGTGTGGGGAATCAGTCCGCAGTGGAAAGTAACTTTGAG-GTAATAAGCACCACT
gi|2 : CGTGTTCCTCTTCAGATATGAGGCCAGCAAATCAATGCCACTATCGATACAGTTGCAGACATCACTATTACCTCGGGGGAGGTTTATA-GGTCACTGAGACCTTGGCCCGAGATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGGTGACTGTGCAGTATCTTGGGAGTCTTAATCCGAGAATC---GGGGACTACTAGTATGACT-TTGCACA---CCCGA-TATATGTTGGCCACT-TACA--A-GATGG-CATG---TCGC--TAGGAATAGATTTC----CTTCG-------TGCACATGGTG-CCGAAG-TTTCAC--GTGAAGTG--GGAACACTCAAGGTCAAAGGCATAAATACGACCTTTAAACTGAGTACTGAAGCGGCACTGCCAGTATTCGATGCATTTTCGACCCGC-AGGGTGCGAGCTCCC-CCGCATACCGCGCAGGTGATTGAA-TTTGACTTGAGTGCAGATATGCCAG--ACTTTATA---CTGAAACCTGCCAGC-ATTTTCCCGCCTGGC
gi|6 : GTGTTCCTCTTCAGATAGGAGGCCAACAAATCAATGCCACTATTGATATAGCTGCATACATCAGTATTATCTCGGGGGAGGTTTATA-GGTCACTGAGGCCCCGGCCCAAGATGGTAAGGGACATCAATGTTAGATTAGCAGGTGAAGGGGCAGGTGGAATAACTGC-CAGTATCTGGGAAGTCTTA-TCTGAGAATCCGGGG-----ACTA---TGACTTTTG-GCACACCC-GACTAT--GTTGGCCCTTGTACA--ACGATGATCATTTTATTAC--TAGGAATATATTTC----CTGCG-------TGCACCTGGTGCC-AAAGTTT-CAT--GTGAA--GCGGACACGCTCAAGGTCAAGGGCATAGATACGACTTTTAAACTGAGTACCAAAGCGACACTGCCAGTATTCGATGCATTTTCatagtagcttcacggacttataatgtcgcaggtaagagagataaactgtgcgttcttaacctaacagacaggagctacattattaagacaggtaccaaagtggaggaaactgtccttgctgtgttggttgtacacaccgaccccaaagtgcaccgtgtgtttgttgaggaagaaaacacttttcagcacatagctctgctcttggaacaggtagggaagagtacgccagtgtaggttaggtctgaggctttagagctagtcaaggagtttgcggacgtctttgcagaagatgaccttgacctcggacatttttctaagatcaagcatcgcattgacactggcgatgcactccccgttaattataaacagcggatgcaccgcatcccagccatgttccagggagaagacgaaggtcatctagataatatgctgaaggccggagtcattcagcca
gi|12 : TTAGATTAGCAAGTGAAGGGGCA---GGGATGACTGCGCGGTATCTTGGAAGTCTTAATCTGAGAATC---GGGG---ACTA---TGACT-TTGCACA---CCCGA-TATATGTTGGCCCCT-TACA--A-GATGA-CATG---TTAC--TAGGAATAGATTTC----CTGCT-------TGCACATGGTG-CCGAAG-TTTCAT--GTGAAGCG--GAAACGCTCAAGGTCAAGGGCATAAACA-----------C--AATCCCGAAGCGGCACTGCCAGTATTCGATGCATTTTCGGCCCAC-AGGGTGCGAG-a
gi|9 : CTT-TGCAGTA-GATGA-C-T----TTACCTCAGGAA-AATTTTCAAGACTGAGCATTGAATG-ACACTGTG-C-GA
gi|4 : taacaggtagggaaaagcacaccctgtgtggaggtcaagtctgatgcttggagccagtacaggaatttgccatgt----TTAT--TAGGAATAGATTTC----CGGTG-------TGCACATGGTG-CCGAAG-TTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGTCATAAACGCAACCTTTGAACTGGGTACCGAAGCGTCACTGTCAGTATTCAATGCGTTTTCGGCCTGC-AGGGTGCGAG-TTCCTCCGCACACTGCACAGGTGATTG-AATGTGACTTGAGCGCAGACATGCC-AGAAT-TTATA---CTGGAGCCTGCCAGT-ATTTTCCCGCCTGGCATAGTAGCTTCGCGGACATATAATATC-------GCAGCT--------------------AGGTAAGAGAGCTAAGTTATATGTTCTTAACCT----NNNNNNNNNNNNNNNNNNNNNNNNNGTACCAAAGTGAGGGAAACTGCCCCTGCTTTGTCGGTT--GAACGCACCTACCCCAAAGTGCGCCGTGTGTTAGTTG-AGGGGG-GA-CACTTATCAGCACATAGCCCCGCTCTT---------------------------ATGAGCGCTGCC---TATGGAATTCAAGCC-----CTTTACGCACTCATCGACGAGTGTATGGAtgcactacccatatacagtttggattgcgcagcgatcctgccgtgttctgggaagagagaaggtcatttagacaacatgctgaaggccggaggcactcggccaatctttttcatgactgggcatcagcatttcaggaagaagatggtagtgtttgctggtacatgtacatggactacagatccttgaaacaaggtaa
gi|10 : ----TTAT--TAGGAATAGATTTC----CGGTG-------TGCACATGGTG-CCGAAG-TTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGTCATAAACGCAACCTTTGAACTGGGTACCGAAGCGTCACTGTCAGTATTCAATGCGTTTTCGGCCTGC-AGGGTGCGAG-TTCCTCCGCACACTGCACAGGTGATTG-AATGTGACTTGAGCGCAGAAATGCC-AGAAT-TTATA---TTGGAGCCTGCCAGT-ATTTTCCCGCCTAGC--------------ATAGTAGCTTCGCGGACAT-GTA------------TATAATATCGCAGGTAAGAGAGCTAAGTTATATGTTCTTAACCcacc
gi|17 : TGACTTGAGCGCAGATATGCCAG--ACTTTATA---TTGGAGCCTGCCAGC-ATTTTCCCGCCTGGCG
gi|2 : GG-CATAGTAGCTTCACGGACTTATAATGTCGCAGGTAAGAGAGATAAACTGTGCGTTCTTAACCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGAGGAAACTGTCCTTGCTGTGTTGGTT--GTACACACCGACCCCAAAGTGCACCGTGTGTTTGTTG-AGGAAGAAAACACTTTTCAGCACATAGCTCTGCTCTTGGAAC--------AGGT------AGGGAAGAGTAC-GCC---AGTGTAGGTTAGGTCTGAGGCTTTA-GAGCTAGTCAAGGAGTTTGCGGACGTCTTTGCAGAAGATGACCTTGACCTC-GGACATTTTTCTAAGATCAAGCATCGCATTGACACTG-GCGATGCACTCCCCGTTAATTATAAACAG--CGGA-TGCACCGCATCCCAGCCATGTTCCAGGGAGA-AGACG---AAGGTCA--TCTAGATAAT---------ATGCT--GAAGGCCGGAGTCATTCAG--CC-Atagtagtttcacggacttataatgccgcaggtaagag
gi|3 : cgtgttcctcttcagatatgaggccagcaaatcaatgccactatcgatacagttgcagacatcactattacctcgggggaggtttataggtcactgagaccttggcccgagatggtaagggacaccaatgttagattagcaggtgaaggggcaggggtgactgtgcagtatcttgggagtcttaatccgagaatcggggactactagtatgactttgcacacccgatatatgttggccacttacaagatggcatgtcgctaggaatagatttccttcgtgcacatggtgccgaagtttcacgtgaagtgggaacactcaaggtcaaaggcataaatacgacctttaaactgagtactgaagcggcactgccagtattcgatgcattttcgacccgcagggtgcgagctcccccgcataccgcgcaggtgattgaatttgacttgagtgcagatatgccagactttatactgaaacctgccagcattttcccgcctGG-CATAGTAGCTTCAAGGACTTATAGTGCCGCAGGTAAAAGAACTAAACTG--CGTTCTTAATCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGGGGAAAC------------GTCGGTT--GAAC------ACACCAAAGTGCGTCGTGTGTTTGTTGAAGGGGAAAA-CACTTGTCAGCACATAGCCCCGCTCTTGGAACAGGTACTGAGGT------AGGGAAGAGCGC-GCC---GGTGGA
gi|17 : ctGG-CGTAGTAGTTTCACGGACTTATAATGCCGCAGGTAAGAGaancagcacatagccccgctcttggaacaggtagaggtagggaagagcgcgccggtggagattaagtctgaggctttggagcgagtcaaggagtttgcggacgtctttgcagtagatgaccttgaccttggaattttttccaagatcgagtatcgcatcgacactggcgatgcactacccgttaaacagcggttgcgccgcactccagccgtgttctagggggaagaggaaggtcatctagacaacatgctgaaggccggagtcattcagccatcttcggactgggcgtcagcaccagtcctggttaggaagaaggatggtagtgttcgctagtgcgttgactacagagctttgaacaaagtgagtgttaagtacacgtacccttaaccactcatcgaggagt
gi|18 : tgacttgagcgcagatatgccagactttatattggagcctgccagcattttcccgcctGTACCAAAGTGAGGGAAACTGCCCCTGCTGTGTCGGTTTCAAACGCACCGACCCCAAAGTGCACCGTGTGTTAGTTG-AGGGG
gi|3 : GGTGGAAA-N------CAGCACATAGCCCCGCTCTTGGAAC--------AGGTAGAGGTAGGGAAGAGCGC-GCC---GGTGGAGATTAAGTCTGAGGCTTTG-GAGCGAGTCAAGGAGTTTGCGGACGTCTTTGCAGTAGATGACCTTGACCTT-GGAATTTTTTCCAAGATCGAGTATCGCATCGACACTG-GCGATGCACTACCCGTT--A----AACAG--CGGT-TGCGCCGCACTCCAGCCGTGTTCTAGGGGGA-A---G---AGG--AAGGTC------ATCTAGACAACATGCT--GAAGGCCGGAGTCATTCAG--CC-A------TCTTCG-GACTGGGCGTCAGCACCAGTCCTGGTTAGGAAGAAGGATGGTAGTG-TTCGCT-A---GTG----CGTT---GACTACAGAG-CTTTGA-ACAAAGTGAGT-GT-TAAGTACACGTA-----CCCTTAAC-CACT------CATCGAGGAGT
gi|8 : ctggcatagtagcttcaaggacttatagtgccgcaggtaaaagaactaaactgcgttcttaatctaacagacaggagctacattattaagacaggtaccaaagtgggggaaacgtcggttgaacacaccaaagtgcgtcgtgtgtttgttgaaggggaaaacacttgtcagcacatagccccgctcttggaacaggtactgaggtagggaagagcgcgccAAC--------AGGT------AGGGAAAAGCAC-ACC---TGTGGAGGTCAAGTCTGATGCTTTG-GAGCCAGTACAGGAATTTGCCGATGTCTTTGCAGTAGATGACTTTGACCTC-AGAAAATTTTCCAAGACTGAGCATTGAATTGACACTG-GCGATGCACTACCCATT--A----AACAG--TGGA-TGCGCAGCGATCCTGCCGTGTTCTGGGGGGA-A---GAGAAAG---G--TC------ATTTAGACAACATGCT--GAAGGCCGGAGGCACTCGG--CC-ATCT---TTTTCA-GACTGGGCATCAGCAT---------TCAGGAAGAAGGATGGTAGTGTTT-GCTGGTACATG----TAC-ATGGACTACAG-ATCCTTGA-ACAAGGTAA-T-GC-TA---ATGCG
gi|9 : tAAC--------AGGT------AGGGAAAAGCAC-ACCCTGTGTGGAGGTCAAGTCTGATGCTT-G-GAGCCAGTACAGGAATTTGCC-ATGTCTTTGCAGTAGATGACTTT-ACCTCAGGAAAATTTT-CAAGACTGAGCATTGAA-TGACACTGTGCGATGCACTACCCATA--T-----ACAGTTTGGATTGCGCAGCGATCCTGCCGTGTTCTGGGAAGAGA---G---AAG---G--TC------ATTTAGACAACATGCT--GAAGGCCGGAGGCACTCGG--CCAATCT---TTTTCATGACTGGGCATCAGCATT--------TCAGGAAGAA-GATGGTAGTGTTT-GCTGGTACATG----TAC-ATGGACTACAG-ATCCTTGAAACAAGGTAA
gi|15 : tGAGCGC-GCC---TATGGAGGTCAAGCC-----CTTTA-CCACTCATCGACGAGTGTATGGA
gi|21 : t------AT---------ATGCT-GAAAG-CCGGAGTCATTCAG--Ccaccctagctggaaaccgtcggttctcgaagctagacgcaaatgtgacctattggcagattaagatagcccaagaagaccggaagaagacagtctttgtaacgaaatatggcttattc
gi|5 : aaggtcatctagacaGGAGTTAT--AGTACC-ATCTAAATCT----GAATGGGCCTCTGCACCGGTACTGGTCCAGAAAAAGGATGGT--T------CTGA---GCGCTATTGC-GTTGACTTCAG-G----------AAGGTGAATAGTCTG---ACAAAGAAAGATGCCTTT-C-CACTGCCAAATATTGAAGAGTGCATGGATGCTCTTAGTGGAAAT-----GTTTACCTCAGTACATTAGACATGGCGCAA---GG-CTGTTATCAGATGGAAGTGGACCCTCATGACCGCCATAATTTGGCCTTCATAACCAAGCATGGACTGTTTG
gi|4 : agtttcaggaggttttcgcaagaaatgacatggatattggtcttttcaaaggaatcactcaaagtgaacacaggagaggttcagccagtccgcactaaactcagacgaaccccattaggctttgaaaagtaggaggaaacacatttggaaagcttattacataat-----CCCTTTACGCACT------CATCGACGAGTGTATGGACACC
gi|15 : ttattaggaatagatttccggtgtgcacatggtgccgaagtttcatatgtgaagcgggaacgctcaaggtcaaggtcataaacgcaacctttgaactgggtaccgaagcgtcactgtcagtattcaatgcgttttcggcctgcagggtgcgagttcctccgcacactgcacaggtgattgaatgtgacttgagcgcagacatgccagaatttatactggagcctgccagtattttcccgcctggcatagtagcttcgcggacatataatatcgcagctaggtaagagagctaagttatatgttcttaacctnnnnnnnnnnnnnnnnnnnnnnnnngtaccaaagtgagggaaactgcccctgctttgtcggttgaacgcacctaccccaaagtgcgccgtgtgttagttgaggggggacacttatcagcacatagccccgctcttatgagcgctgcctatggaattcaag-----CCCTTTAC-CACT------CATCGACGAGTGTATGGACACCCTAGCTGGAAACCGTCGGTTC---TCG--AAGCTAGAC---GC-AAATGTGACCTATTGGCAGATTAAGATAGCCCAAGAAGACCGGAAGAAGACAGTCTTTGTAACGAAATATGGCTTATTC
gi|16 : tgagcgcgcctatggaggtcaagAACGAAATATGGCTTATTCGAATTCAC--GAAAGTGGGTTTCGGTCTGTGTAATGCCCCGGCGACCTTCGCTAGGGCCATCCATCTGGTGTTGCACAGACTGAACTGGAAAA
gi|22 : TCGAATTCACACGAGAATGGGTTTTGGTCTGTGTAACGC
gi|11 : TATGGACACCA-TCTGGTGTTGCACAGACTGAACTGGAAAAAAGCTTTAGCATTCCTGGACGATGTTTTGTTTCTGGGAACTTCAGACCGGGCTCATGTAGATAACTTCCGACAGTTGTGTTTTTTTTAGCGATTCCGAGAATATGGCCTCAAATTTAAACCTTGGAAATGTGAGCTATTTAAAATTAGGGTCGAGTTCTCAAGCAGAACAGTGAGTGAGCACGGATTCGAGATGGGGGACTAGTACATCGAAGCAGCACGTGGCTG
gi|20 : AATTTAAACCTCGGAAATGTGAGCTAATTAAACTTAAGGTTGAGTTCTTGGGCAGATCAGTGAGTGAGa
gi|7 : GCTGACTCCGCTATATGCGGCAACTGGAAAAAAAGGTGTCCGATGGAGAGAT-------------CCTTTGAGGACCTCCTTAGGTCGATAAATAATCCTCCAGTAT--------------AGTCAAGGTCATTTTATTCTGGACACTCATGCCTCGGATCATGCCGTCGGCGGGGAATTAAGTCAAGTCCAGAACGGGAACGATAGAACAATAGGTTATGGCAGCGCTCAAGTGCTATCACCATGGTTGATGCAACCACCGACTATTTGTAACACCAGGAAAGAGTTGC-GGCGGGTGCAATTCAAATTTACTTTGCCAATTTCAGCCACTACCTGACTTAGGCACGGAATTACACAGTCACAGGACCGATCATCATAGCCTGGTTTGGCTGAATGAATTTCAAGGCAT
gi|23 : CCGATCATCATAGCCTGGTTTGGCTG-ATGAATTTCAA-Gt
gi|13 : AATGCTAATGCGCTATCCAGGGATATATTGGACACATGTCAGAGC-TACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCAGTGGAGGCAGGTACTGCCACCATATGCA-TGAACGCTGGCATGAGTTTAACACCGAGGTCCACAATGTGATTCCCTAATGTCTCAGTTGTT---TCTGGAATCGCCTGGGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCATTGAG-ATACTAGGCTCCACT
gi|14 : GCGCTATCCAGGGATATATTGGACATCTGTCAGAGCATACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCAGTGGAGGCAGGTACTGCCACCATATGCACTGAACGCTGGCATGAGTTTAACACCGAGGTC-ACAATGTGATTCCCTAATG-CTCAGTTGTTTGCTTGGAAATCGCCT-GGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCATTGAGAATACTAGGCTCCACTcttc
gi|24 : atgcataagGGAAAGTAACTTAGAG-GTATTAAGCCCCACT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Alignments
lowQualScore : 1111111111111 11111111111111
lowQualScore : 1 1 111 1 3333333 11 1 1 1 2222 222 4444 111 4444444444444444444 222222222 11 22222222 111111 111111 222222 222222 11 22222 111 111 11 3333333 44444 1 11 1 1 111 22222 222222 1111 444444444 4444444 1 3333333 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 1111111111111 11111111111111 222 3333333 1 1 2 1 2222 1 1 1 1 1 222 2 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 2 2 222222 1
lowQualScore : 1 6 1 1 0 6 3 6 2 777 6 2 2 3 66 2 2 0 2 2222222 2 33 88 2 3 3 0 0 0 7777 000 99 0 2 1 0 8 7 3 0 2222 444 99 0 1 0 9999999999999999999 000000000 4 22 3 0 1 11 1 8 6 0 0 3 00000000 666666 5 9999 444444 888888 5 5 1 2 8 22 3 1 3 8 0 333333 1 0 11 8 1 1 1 33333 000 5 4 77 2 6 0 444 0 22 1 9999999 6 00000 8 5 33 3 4 0 0 777 2 1 55555 3 888888 1 0 555 2222 444444444 6 0 1111111 999 6 0 1 1 11 0 1 333 1 22 1 22 0 11 0 6 7 0 0 1 1 0 4 4 4 2 3 3 3 55 4 2 2222222 3 1 1 0 0 0 1 4 2 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 4 2 2 0000000000000 2 2 77777777777777 2 4 2 2 2 3 3 111 2 3 2222222 2 5 5 3 0 5 4444 5 5 5 5 2 5 111 3 6 444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3 1 3 3 6 7 7 777777 6 4 0 0 1
lowQualScore : . . . . . . . . . ... . . . . .. . . . . ....... . .. .. . . . . . . .... ... .. . . . . . . . . .... ... .. . . . ................... ......... . .. . . . .. . . . . . . ........ ...... . .... ...... ...... . . . . . .. . . . . . ...... . . .. . . . . ..... ... . . .. . . . ... . .. . ....... . ..... . . .. . . . . ... . . ..... . ...... . . ... .... ......... . . ....... ... . . . . .. . . ... . .. . .. . .. . . . . . . . . . . . . . . . .. . . ....... . . . . . . . . . ........................................................................................ . . . . ............. . . .............. . . . . . . . ... . . ....... . . . . . . .... . . . . . . ... . . .................................................................................... . . . . . . . ...... . . . . .
lowQualScore : 0 7 0 0 7 7 3 7 0 555 5 5 0 0 55 0 5 0 5 0000000 5 88 55 5 2 2 0 0 0 5555 000 22 7 2 0 7 0 0 2 8 4444 000 44 8 4 4 7777777777777777777 666666666 6 66 2 8 4 00 0 0 7 8 8 8 77777777 444444 0 0000 444444 999999 0 0 0 2 0 44 2 0 8 0 6 000000 0 8 00 0 0 0 0 55555 000 7 4 99 7 7 8 000 8 66 4 8888888 0 44444 0 4 66 2 2 0 0 555 0 0 00000 2 888888 0 7 777 7777 333333333 7 7 7777777 777 7 7 0 0 33 7 0 000 0 00 0 00 7 33 2 7 3 7 7 0 0 7 0 0 0 5 0 0 0 55 0 5 5555555 0 0 0 7 7 7 0 0 5 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 5 5 0000000000000 5 5 55555555555555 5 0 5 5 5 0 0 000 5 0 0000000 5 0 5 0 0 0 5555 5 5 5 5 5 5 000 7 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 0 7 3 7 3 3 333333 7 0 0 2 2
consensus : CGTGTTCCTCTTCAGATAGGAGGCCAGCAAATCAATGCCACTATCGATACAGCTGCAGACATCACTATTATCTCGGGGGAGGTTTATA-GGTCACTGAGGCCCCGGCCCGAGATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGATGACTGCGCAGTATCTNGGAAGTCTTAATCTGAGAAT-CGGGGACTA------TGACTTT--GCACACCCGATATATGTTGGCCCCT-TACAA-GATGA-CAT----TTACTAGGAATAGATTTCCTGCGTGCACATGGTGCCGAAGTTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGGCATAAACACGACCTTTAAACTGAGTACCGAAGCGGCACTGCCAGTATTCGATGCGTTTTCGGCCCGC-AGGGTGCGAGTTCCTCCGCACACCGCGCAGGTGATTGAATGTGACTTGAGCGCAGATATGCCAGAAACTTTATA---CTGGAGCCTGCCAGC-ATTTTCCCGCCTGGCGTAGTAGCTTCGCGGACATATAATNCCGGCATAGTAGCTTCACGGACTTATAATGTCGCAGGTAAGAGAGCTAAACTGTGCGTTCTTAACCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGGGGAAACTGCCCCTGCTGTGTCGGTT--GAACGCACCGACCCCAAAGTGCGCCGTGTGTTTGTTG-AGG-GGGAAACACTTNTCAGCACATAGCCCCGCTCTTGGAAC--------AGGTAG------GGAAGAGCGC-GCC---TGTGGAGGTCA------AGTCTGA-G-CT-TTG-GAGCTAGTCGAGGAGTTTGCGGACGTCTTTGCAGTAGATGACCTTGACCTC-GGAAATTTTTCCAAGATCGAGCATCGCATTGACACTG-GCGATGCACTACCCGT------TAAACAGC--GGAT-GCGCCGCGNTCCAGCCGTGTTCCGGGGGGA-A---G---AAG-GTCATCTAGACAACATGCT--GAAGGCCGGAGTCATTCGGCC-ATCT---TCTTCA-GACTGGGCGTCAGCACCGGTCCTGGTCAGGAAGAAGGATGGTAGTGTTCGCTGGTACGTGTGC-GTGGACTACAGATCCTTG-AACAAGGTGAAT-GT-TG---ACGCGTAC-----CCTTTACCACT------CATCGAGGAGTGTATGGACGCCCTANNTGGAAACCGCCGGTT---CTCG--AAGTTAGAC---GC-CAATGCGGCCTATTGGCAGATTGAAATAGCCCCAGAAGACCGGAAGAAGACGGCCTTTATAACGAAATATGGCTTATTCGAATTCACACGAGAATGGGTTTCGGTCTGTGTAACGCCCCGGCGACCTTCGCTAGGGNCATC-ATCTGGTGTTGCACAGACTGAACTGGAAAANAGCTNTGGCATTCCTNGACGATGTTTTGNTNCTGGGAACNTCAGNNCGGGCCCATGNAGATAACTTNCGACAGTTGTGTTTTCTTNAGCGATTCCGAGAATATGGCCTCAAATTTAAACCTCGGAAATGTGAGCTATTTAAACTTAAGGTCGAGTTCTCGGGCAGAACAGTGAGTGAGCACGGANTCGAGATGGGGGACCAGTACATNGAAGCAGCACGTGGCTGGCCTGTGCCCTGTGATGTGAAGGGTGTTGAGCGATTTTTAGGTTTCGCCAACTACCATCGCAGTTATATTCCCCAGTTTTTTTGTATTGCTGACTCCGCTGTATGCGGCAACTGGAAAAGGNGGTNTCCCGTGGGGAGATGACCAACAGGATGCCTTTGANGANCTCCTTAGGTCGATGAATAATCCTCCGGTATTAGCAATCCCGAATAGTCAAGGTCATTTTATTCTGGACACTNATGCCTCGGNTCATGCCGTNGGCGNGGAATTGAGTCAAGTCCAGAACGGGAANGANAGAACAATNGGTTATGGCAGCGCTCAAGTGCTATCANCANGGTTGATGCAACCGNCGGCTATTTGTANCACCAGGGAGGAGTTGCTGGCGGGTGCAATTCAAATTTACTTCGCCAATTCCAGCCACTACCTGACTTAGGCANGGAATTACACAGTCACAGGACCGATCATCATAGCCTGGTTTGGCTG-ATGAATTTCAAGGCATCCGCAAAATCAGATAGCTCGCTGGCTAGAAGAACTAAGCCAGTACAACATGCGGATTATCCATCGCCTAGGGAGGAAGCATTTGAATGC-TAATGCGCTATCCAGGGATATATTGGACACATGTCAGAGC-TACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCGGTGGAGGCAGGTACTGCCGCCATACGCA-TGAACGCTGGCATGAGTTTAACACCGAGGTCCACGATGTGATTCCCTAATGTCTCAGTTGTTT-CTCGGGAATCGCCTGGGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCNTTGAG-GTACTAGGCTCCACT
Reference ( family-2778 ) : CGTGTTCCTCTTCAGATANGAGGCCAGCAAATCAATGCCACTATCGATACAGCTGCANACATCANTATTACCTCGGGGGAGGTTTATA-GGTCACTGAGGCCCCGGCCCGAGATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGATGACTGCGCGGTATCTTGGAAGTCTTAATCCGAGAAT-CGGGGACTA------TGACTTT--GCGCACCCGATATATGTTGGCCCCT-TACAA-GATGA-CAT----TTACTAGGAATAGATTTCCTGCGTGCACATGGTGCCGAAGTTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGGCATAAACGCGACCTTTGAACTGAGTACCGAAGCGNCACTGCCAGTATTCGATGCGTTTTCGGCCCGC-AGGGTGCGAGTTCCTCCGCACACCGCGCAGGTGATTGAATGTGACTTGAGCGCAGATATGCCAGGAACTTTATA---CTGGAGCCTGCCAGC-ATTTTCCCGCCTGGCGTAGTAGCTTCGCGGNCGTANNNTNNCGGCATAGTAGCTTCACGGACTTATAATGCCGCAGGTAAGAGAGCTAAGCTGTACGTTCTTAACCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGGGGAAACTGCCCCTGCTGTGTCGGTT--GAACGCACCGACCCCAAAGTGCGCCGTGTGTTNGTTG-AGG-GGGAAACACTTNTCAGCACATAGCCCCGCTCTTGGAAC--------AGGTAG------GGAAGAGCGC-GCC---TGTGGAGGTCA------AGTCTGA-G-CT-TTG-GAGCTAGTCGAGGAGTTTGCGGACGTCTTTGCAGTAGATGACCTTGACCTC-GGAAANTTTTCCAAGACCGAGCATCGNATTGACACTG-GCGATGCACTACCCGT------TNAACAGC--GGAT-GCGCNGCGNTCCNGCCGTGTTCTGGGGGGA-A---G---AAG-GTCATTTAGACAACATGCT--GAAGGCCGGAGTCATTCGGCC-ATCT---TCTTCG-GACTGGGCGTCAGCACCGGT-CTGGTCAGGAAGAAGGATGGTAGTGTTTGCTGGTACGTGTGC-GTGGACTACAGGTCCTTG-AACAAGGTGAGT-GT-TA---ACGCGNAC-----CCTTTACCACT------CATCGANGAGTGTATGGACGCCCTNGNTGGAAACCGTCGGTTCACCTCGGTACGCTAGACATGGCGNAATGTGGCCTGTTGNCAGATNGAGGTGGNCCNNNANGACCGNNANAANNCGGCCTTCGTAACGAAATATGGCTTATTCGAATTCACACGAGAGTGGGTTTCGGTCTGTGTAACGCCCCGGCGACCTTCGCTANGGNCACCNATCTGGTGTTGCACAGACTGAACTGGAAAAAAGCTTTAGCATTCCTGGACGATGTTTTGTTTCTGGGAACTTCAGACCGGGCTCATGTAGATAACTTCCGACAGTTGTGTTTTTTTTAGCGATTCCGAGAATATGGCCTCAAATTTAAACCTCGGAAATGTGAGCTANTTAAANTTAGGGTCGAGTTCTCGGGCAGANCAGTGAGTGAGCACGGATTCGAGATGGGGGACTAGTACATCGAAGCAGCACGTGGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGACTCCGCTATATGCGGCAACTGGAAAAAAAGGTGTCCGATGGAGAGAT-------------CCTTTGAGGACCTCCTTAGGTCGATAAATAATCCTCCAGT--------------ATAGTCAAGGTCATTTTATTCTGGACACTCATGCCTCGGATCATGCCGTCGGCGGGGAATTAAGTCAAGTCCAGAACGGGAACGATAGAACAATAGGTTATGGCAGCGCTCAAGTGCTATCACCATGGTTGATGCAACCACCGACTATTTGTAACACCAGGAAAGAGTTGC-GGCGGGTGCAATTCAAATTTACTTTGCCAATTTCAGCCACTACCTGACTTAGGCACGGAATTACACAGTCACAGGACCGATCATCATAGCCTGGTTTGGCTGAATGAATTTCAAGGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGC-TAATGCGCTATCCAGGGATATATTGGACACNTGTCAGAGCATACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCAGTGGAGGCAGGTACTGCCACCATATGCACTGAACGCTGGCATGAGTTTAACACCGAGGTCCACAATGTGATTCCCTAATGTCTCAGTTGTTTGCTCGGGAATCGCCTGGGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCATTGAG-ATACTAGGCTCCACT
gi|1 : CGTGTTCCTCTTCAGATAGGAGGCCAGCAAATCAATGCCACTATC-ATACAGCTGCAGACATCACTATTATCTCGGGG-AGGTTTATGTGGTCA-TGAGGCCC-GGCCCGAAATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGAT-ACTGCGCAGTATCTGGGAAGTCTTA-TCTGA-AAT-CGG--ACT-------TGA--TT--G-ACACC-GATAT--GTTGGCCCTT-TACAA-GATGA-CAT----TTACTAGGAA-AGATTTCCTGCGTG-ACATGGTGC-GAAGTT-CA---GTGAAGCGCGGAAACGCTCAAG--TAAGGGCATAGATA-GACCTTTAAACTGAGTACCGAAGCAGCACTGCCAGTATTCGATGCATTTTCGGCCCGCTAGGGTGCGAGTTCC-CCGCATACCGCGCAGGTGATTGA-TGTGACTTGAGCGCAGATATGCC--GA--CTTATAACTCTGGAGCCTGCCAGCGATTTTCCCGCCTGGCGNNNNNNNNNNNNNNNNNNNNNNNNNCGGCATAGTAGCTTCACTGATTTATAATGTCGCAGGTAAGAGAGCTAAACTGTGCGTTCTTAACCCAACAGACAGGAGCTACATTTTTAAGACAGGTACCAAAGTAGGGGAAACTGTCCCTGCTGTGTCGGTT--GAACGTCCCGATCCCAAAGTGCACCGTGTGTTTGTTG-AGG-GGGAAACACTTTTCAGCACATAGCCCCGCTCTTGGAAC--------AGGTAG------GGAAGAACGC-GCC---TGTGGAGGTTA------GGTCTGAGG-CT-TTA-GAGCTAGTCAAGGAGTTTGCGGAAGTCTTTGCAGTAGATGACCTTGACCTC-GGAATTTTTTCCAAGATCGAGCATCACATTGACACTG-GCAATGCACTCCCCGT------TTAACAGC--GGAT-GCGCCATACCCCAACCGTGTTCCAGGGAGA-A---G---AAGTATCAT---------ATGCTTGAAAGGCCGGAGTCATTCAGCC-ATCT---TCTTCA-GACTGGGCGTCAGCACCAGTCCTGGTTAGGAAGAAGGATGGTAGTG-TTGCTGA---GTGTGCTGTGGACTACAGG-CCTTG--ACAAGGTGACT-GT-TG---ACACGTAC-----CCTTTACCACT------CATCGAGGAGTGTATGGACACCCTATTTGGAAACCGCTGGTT---TTCG--AAGTTAGAC---GC-CAATGCGGCCTATTGGCAGATTGAAATAGCTCCAGAAGACAGGAAGAAGACAGCCTTTATAACAAAATATGGCTTATTCGAATT--CACGAGAATGGGTTTTGGTCTGTGTAACGCCCCGGCGACTTTCGCTAGGGTCATCAATCTGGTGTTGCACAGACTGAACTGGAAAATAGCTATGGCATTCCTTGACGATGTTTTAGTGTTGGGAACGTCAGCACGAGTCCATGAAGATAACTTGCGACAA--G----TTCTTGAGTGATTCCGAGAATATGGCCTCAAATTTAAACCTCGGAAATGTGAGCTATTCAAACTTAAGGTTGAGTTCTTGGATAGAACAGTGTGTGAGCATGGAATCGAGATGGGGGACCAGTACATAGAAGCAGTACGTGACTGGCCTGTGCCCTGTGATGTGAAGGGTGTTGAGCGATTTTTAGGTTTCGCCAACTACCATCGCAGTTATATTCCCCAGTTTTTTTGTATTGCTG-TTCCGCTGTATGCGGTAACTGGAAAAGGTGGTTTCCCGTGGGGAGATGACCAACAGGATGCCTTTGACGAACTCCTTAGGTTGATGAATAATCCTCCGGTATTAGCAATCCCGAATAGTCAAGGTCATTTTATTCTGGACATTGATGCCTCGGTTCATGCCGTAGGCGTGGAATTGAGTCAAGTCCAGAACGGGAAAGAGAGAACAATCGGTTATGGCAGCGC---AGTGCTATCAGCAGAG-------AATTGGCGG-TA-TTGTACCACCAGGGAGGAGTTGCTGGC-GGTG-A--TCAAATTTAC-TCGCCAATTCC-GTCACTACCTG-CTT-GGCAGGGAATT-CACAGT-A-AGGACCGATCATCATAGCCTGGTTTGGCTG-ATGAAATTCAA-GCATCCGCAAAATCAGATAGCTCGCTGGCTAGAAGAACTAAGCCAGTACAACATGCGGATTATCCATCGCCTAGGGAGGAAGCATTTGAATGT-TGATGTGCTATCCAGGGACATATTGGACACATGTCAGAGC-TACTCTACTAAAGTTCGGTTAGAGGATTTGCCTTGCGATGGATGCAGGTACTGCCGCCAAGCGCA-TGCACGCTGGCATGAGTTTGACACCGAGTTCGACGATGTAATTCCCC--TGTCTCAGTTGTT---TCAGGAATCGCCTGGGAGTGTGGGGAATCAGTCCGCAGTGGAAAGTAACTTTGAG-GTAATAAGCACCACT
gi|10 : ----TTATTAGGAATAGATTTCCGGTGTGCACATGGTGCCGAAGTTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGTCATAAACGCAACCTTTGAACTGGGTACCGAAGCGTCACTGTCAGTATTCAATGCGTTTTCGGCCTGC-AGGGTGCGAGTTCCTCCGCACACTGCACAGGTGATTGAATGTGACTTGAGCGCAGAAATGCCAGAA--TTTATA---TTGGAGCCTGCCAGT-ATTTTCCCGCCTAGCATAGTAGCTTCGCGGACAT--------------GTA------------TATAATATCGCAGGTAAGAGAGCTAAGTTATATGTTCTTAACC
gi|11 : TATGGACACC-ATCTGGTGTTGCACAGACTGAACTGGAAAAAAGCTTTAGCATTCCTGGACGATGTTTTGTTTCTGGGAACTTCAGACCGGGCTCATGTAGATAACTTCCGACAGTTGTGTTTTTTTTAGCGATTCCGAGAATATGGCCTCAAATTTAAACCTTGGAAATGTGAGCTATTTAAAATTAGGGTCGAGTTCTCAAGCAGAACAGTGAGTGAGCACGGATTCGAGATGGGGGACTAGTACATCGAAGCAGCACGTGGCTG
gi|12 : TTAGATTAGCAAGTGAAGGGGCA---GGGATGACTGCGCGGTATCTTGGAAGTCTTAATCTGAGAAT-CGGGGACTA------TGACTTT--GCACACCCGATATATGTTGGCCCCT-TACAA-GATGA-CATG---TTACTAGGAATAGATTTCCTGCTTGCACATGGTGCCGAAGTTTCAT--GTGAAGCG--GAAACGCTCAAGGTCAAGGGCATAAACACAATC-------------CCGAAGCGGCACTGCCAGTATTCGATGCATTTTCGGCCCAC-AGGGTGCGAGa
gi|13 : AATGC-TAATGCGCTATCCAGGGATATATTGGACACATGTCAGAGC-TACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCAGTGGAGGCAGGTACTGCCACCATATGCA-TGAACGCTGGCATGAGTTTAACACCGAGGTCCACAATGTGATTCCCTAATGTCTCAGTTGTTT-CT--GGAATCGCCTGGGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCATTGAG-ATACTAGGCTCCACT
gi|14 : ATGCATAAGGCGCTATCCAGGGATATATTGGACATCTGTCAGAGCATACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCAGTGGAGGCAGGTACTGCCACCATATGCACTGAACGCTGGCATGAGTTTAACACCGAGGT-CACAATGTGATTCCCTAATG-CTCAGTTGTTTGCTTGGAAATCGCCT-GGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCATTGAGAATACTAGGCTCCACTcttc
gi|15 : GAGCGC-GCC---TATGGAGGTCA------AGCC------CT-TTA-CCACTCATCGACGAGTGTATGGACACCCTAGC
gi|15 : tC-----CCTTTACCACT------CATCGACGAGTGTATGGACACCCTAGCTGGAAACCGTCGGTT---CTCG--AAGCTAGAC---GC-AAATGTGACCTATTGGCAGATTAAGATAGCCCAAGAAGACCGGAAGAAGACAGTCTTTGTAACGAAATATGGCTTATTCtggaaaccgtcggttctcgaagctagacgcaaatgtgacctattggcagattaagatagcccaagaagaccggaagaagacagtctttgtaacgaaatatggcttattc
gi|16 : tgagcgcgcctatggaggtcaagAACGAAATATGGCTTATTCGAATTCAC--GAAAGTGGGTTTCGGTCTGTGTAATGCCCCGGCGACCTTCGCTAGGGCCATCCATCTGGTGTTGCACAGACTGAACTGGAAAA
gi|17 : TGACTTGAGCGCAGATATGCCAG--ACTTTATA---TTGGAGCCTGCCAGC-ATTTTCCCGCCTGGCGTAGTAGTTTCACGGACTTATAATGCCG
gi|18 : GTACCAAAGTGAGGGAAACTGCCCCTGCTGTGTCGGTTTCAAACGCACCGACCCCAAAGTGCACCGTGTGTTAGTTG-AGG-GGcaggtaagag
gi|2 : CGTGTTCCTCTTCAGATATGAGGCCAGCAAATCAATGCCACTATCGATACAGTTGCAGACATCACTATTACCTCGGGGGAGGTTTATA-GGTCACTGAGACCTTGGCCCGAGATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGGTGACTGTGCAGTATCTTGGGAGTCTTAATCCGAGAAT-CGGGGACTACTAGTATGACTTT--GCACACCCGATATATGTTGGCCACT-TACAA-GATGG-CATG---TCGCTAGGAATAGATTTCCTTCGTGCACATGGTGCCGAAGTTTCAC--GTGAAGTG--GGAACACTCAAGGTCAAAGGCATAAATACGACCTTTAAACTGAGTACTGAAGCGGCACTGCCAGTATTCGATGCATTTTCGACCCGC-AGGGTGCGAGCTCCCCCGCATACCGCGCAGGTGATTGAATTTGACTTGAGTGCAGATATGCCAG--ACTTTATA---CTGAAAC---------------CTGCC------AGCATTTTCCCG----------CCTGGCATAGTAGCTTCACGGACTTATAATGTCGCAGGTAAGAGAGATAAACTGTGCGTTCTTAACCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGAGGAAACTGTCCTTGCTGTGTTGGTT--GTACACACCGACCCCAAAGTGCACCGTGTGTTTGTTG-AGGAAGAAAACACTTTTCAGCACATAGCTCTGCTCTTGGAAC--------AGGTAG------GGAAGAGTAC-GCC---AGTGTAGGTTA------GGTCTGAGG-CT-TTA-GAGCTAGTCAAGGAGTTTGCGGACGTCTTTGCAGAAGATGACCTTGACCTC-GGACATTTTTCTAAGATCAAGCATCGCATTGACACTG-GCGATGCACTCCCCGTTAATTATAAACAGC--GGAT-GCACCGCATCCCAGCCATGTTCCAGGGAGA-AGACG---AAG-GTCATCTAGATAATATGCT--GAAGGCCGGAGTCATTCAGCC-A
gi|20 : AATTTAAACCTCGGAAATGTGAGCTAATTAAACTTAAGGTTGAGTTCTTGGGCAGATCAGTGAGTGAG
gi|21 : ---AAG-GTCATCTAGACAATATGCT--GAAAGCCGGAGTCATTCAGC
gi|22 : TCGAATTCACACGAGAATGGGTTTTGGTCTGTGTAACGC
gi|23 : CCGATCATCATAGCCTGGTTTGGCTG-ATGAATTTCAAG
gi|24 : GGAAAGTAACTTAGAG-GTATTAAGCCCCACT
gi|3 : GGCATAGTAGCTTCAAGGACTTATAGTGCCGCAGGTAAAAGAACTAAACTG--CGTTCTTAATCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGGGGAAAC------------GTCGGTT--GAACACA------CCAAAGTGCGTCGTGTGTTTGTTGAAGG-GGAAAACACTTGTCAGCACATAGCCCCGCTCTTGGAACAGGTACTGAGGTAG------GGAAGAGCGC-GCC---GGTGGAAANCAGCACATAGCCC-C-G-CTCTTG-GAACAGGTAGAGGctt
gi|3 : ctGG-TGGAAAN------CAGCACATAGCCCCGCTCTTGGAAC--------AGGTAGAGGTAGGGAAGAGCGC-GCC---GGTGGAGATTA------AGTCTGA-GGCT-TTG-GAGCGAGTCAAGGAGTTTGCGGACGTCTTTGCAGTAGATGACCTTGACCTT-GGAATTTTTTCCAAGATCGAGTATCGCATCGACACTG-GCGATGCACTACCCGT------TAAACAGC--GGTT-GCGCCGCACTCCAGCCGTGTTCTAGGGGGA-AGAGG---AAG-GTCATCTAGACAACATGCT--GAAGGCCGGAGTCATTCAGCC-A------TCTTCG-GACTGGGCGTCAGCACCAGTCCTGGTTAGGAAGAAGGATGGTAGTGTTCGCTA------GTGC-GTTGACTACAGAGCTTTG-AACAAAGTGAGT-GT-TAAGTACACGTAC-----CCTTAACCACT------CATCGAGGAGTtagggaagagcgcgccggtggagattaagtctgaggctttggagcgagtcaaggagtttgcggacgtctttgcagtagatgaccttgaccttggaattttttccaagatcgagtatcgcatcgacactggcgatgcactacccgttaaacagcggttgcgccgcactccagccgtgttctagggggaagaggaaggtcatctagacaacatgctgaaggccggagtcattcagccatcttcggactgggcgtcagcaccagtcctggttaggaagaaggatggtagtgttcgctagtgcgttgactacagagctttgaacaaagtgagtgttaagtacacgtacccttaaccactcatcgaggagt
gi|4 : ctggcatagtagcttcaaggacttatagtgccgcaggtaaaagaactaaactgcgttcttaatctaacagacaggagctacattattaagacaggtaccaaagtgggggaaacgtcggttgaacacaccaaagtgcgtcgtgtgtttgttgaaggggaaaacacttgtcagcacatagccccgctcttggaacaggtactgaggtagggaagagcgcgcc----TTATTAGGAATAGATTTCCGGTGTGCACATGGTGCCGAAGTTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGTCATAAACGCAACCTTTGAACTGGGTACCGAAGCGTCACTGTCAGTATTCAATGCGTTTTCGGCCTGC-AGGGTGCGAGTTCCTCCGCACACTGCACAGGTGATTGAATGTGACTTGAGCGCAGACATGCCAGAA--TTTATA---CTGGAGCCTGCCAGT-ATTTTCCCGCCTGGCATAGTAGCTTCGCGGACATATAATATC------GCAGCT--------------------AGGTAAGAGAGCTAAGTTATATGTTCTTAACCT----NNNNNNNNNNNNNNNNNNNNNNNNNGTACCAAAGTGAGGGAAACTGCCCCTGCTTTGTCGGTT--GAACGCACCTACCCCAAAGTGCGCCGTGTGTTAGTTG-AGG-GGG-GACACTTATCAGCACATAGCCCCGCTCTT---------------------------ATGAGCGCTGCC---TATGGAATTCA------AGCC------CT-TTACGCACTCATCGACGAGTGTATGGAC
gi|5 : GGA-G---G---AAA-CACATTTGGAAAGCTTATT--ACATAATGGAGTTATAGTACC-ATCTAAATCT----GAATGGGCCTCTGCACCGGTACTGGTCCAGAAAAAGGATGGTTCTGAGCGCTA-----T-TGC-GTTGACTTCAGG----------AAGGTGAATAGTCTG---ACAAAGAAAGATGCCTTT-CCACTGCCAAATATTGAAGAGTGCATGGATGCTCTTAGTGGAAAT-----GTTTACCTCAGTACATTAGACATGGCGCAA---GGC-TGTTATCAGATGGAAGTGGACCCTCATGACCGCCATAATTTGGCCTTCATAACCAAGCATGGACTGTTTGacc
gi|6 : agtttcaggaggttttcgcaagaaatgacatggatattggtcttttcaaaggaatcactcaaagtgaacacaggagaggttcagccagtccgcactaaactcagacgaaccccattaggctttgaaaagtaGTGTTCCTCTTCAGATAGGAGGCCAACAAATCAATGCCACTATTGATATAGCTGCATACATCAGTATTATCTCGGGGGAGGTTTATA-GGTCACTGAGGCCCCGGCCCAAGATGGTAAGGGACATCAATGTTAGATTAGCAGGTGAAGGGGCAGGTGGAATAACTGC-CAGTATCTGGGAAGTCTT-ATCTGAGAATCCGGGGACTA------TGACTTTTGGCACACCCGAC-TATGTTGGCCCTTGTACAACGATGATCATTTTATTACTAGGAATATATTTCCTGCGTGCACCTGGTGCCAAAGTTTC--ATGTGAAGCG--GACACGCTCAAGGTCAAGGGCATAGATACGACTTTTAAACTGAGTACCAAAGCGACACTGCCAGTATTCGATGCATTTTC
gi|7 : GCTGACTCCGCTATATGCGGCAACTGGAAAAAAAGGTGTCCGATGGAGAGAT-------------CCTTTGAGGACCTCCTTAGGTCGATAAATAATCCTCCAGT--------------ATAGTCAAGGTCATTTTATTCTGGACACTCATGCCTCGGATCATGCCGTCGGCGGGGAATTAAGTCAAGTCCAGAACGGGAACGATAGAACAATAGGTTATGGCAGCGCTCAAGTGCTATCACCATGGTTGATGCAACCACCGACTATTTGTAACACCAGGAAAGAGTTGC-GGCGGGTGCAATTCAAATTTACTTTGCCAATTTCAGCCACTACCTGACTTAGGCACGGAATTACACAGTCACAGGACCGATCATCATAGCCTGGTTTGGCTGAATGAATTTCAAGGCATa
gi|8 : AAC--------AGGTAG------GGAAAAGCAC-ACC---TGTGGAGGTCA------AGTCTGATG-CT-TTG-GAGCCAGTACAGGAATTTGCCGATGTCTTTGCAGTAGATGACTTTGACCTC-AGAAAATTTTCCAAGACTGAGCATTGAATTGACACTG-GCGATGCACTACCCAT------TAAACAGT--GGAT-GCGCAGCGATCCTGCCGTGTTCTGGGGGGA-A---GAGAAAG-GTCATTTAGACAACATGCT--GAAGGCCGGAGGCACTCGGCC-ATCT---TTTTCA-GACTGGGCATCAGCAT---------TCAGGAAGAAGGATGGTAGTGTTTGCTGGTACATGTAC-ATGGACTACAGATCCTTG-AACAAGGT-AAT-GC-TA---ATGCGt
gi|9 : tAAC--------AGGTAG------GGAAAAGCAC-ACCCTGTGTGGAGGTCA------AGTCTGATG-CT-T-G-GAGCCAGTACAGGAATTTGCC-ATGTCTTTGCAGTAGATGACTTT-ACCTCAGGAAAATTTTC-AAGACTGAGCATTGAAT-GACACTGTGCGATGCACTACCCAT------ATA-CAGTTTGGATTGCGCAGCGATCCTGCCGTGTTCTGGGAAGAGA---G---AAG-GTCATTTAGACAACATGCT--GAAGGCCGGAGGCACTCGGCCAATCT---TTTTCATGACTGGGCATCAGCATT--------TCAGGAAGAA-GATGGTAGTGTTTGCTGGTACATGTAC-ATGGACTACAGATCCTTGAAACAAGGTAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Alignments
lowQualScore : 1 1 111 1 3333333 11 1 1 1 2222 222 555 111 22222 222222222 11 22222222 111111 111111 222222 2222222 11 2222222 111 2222222 44444 1 11 1 1 111 22222 222222 1111 222 11 222 1 111 3333333 1 4444444444444 55555555555555 222 3333333 1 1 1 1 2222 1 1 1 1 1 222 1 1 1 1 222222 1
lowQualScore : 6 6 3 6 2 777 6 2 1 66 2 0 2 2222222 2 33 2 2 3 3 0 0 0 7777 000 99 1 0 8 7 3 0 000 444 99 0 1 0 2 3 0 55555 0 000000000 22 3 0 1 11 1 8 6 0 0 3 00000000 666666 5 9999 444444 888888 5 5 1 2 8 22 3 3 8 0 3333333 11 8 1 1 8 9999999 99 2 6 0 444 0 8 1 0000000 6 00000 8 5 33 3 0 0 0 777 2 55555 3 888888 0 0 22 2222 333 88 333 3 999 6 0 0 6 7 0 1 666 1 1 1 1 1 1 22 1 1 2222222 1 0 0 1 1 5 1 1 2 8888888888888 1 1 11111111111111 1 1 1 1 1 1 1 111 1 1 2222222 1 5 5 1 5 5 4444 5 5 5 5 1 5 111 3 6 3 3 0 0 0 3 6 0 7 7 555555 6 1 0 0 1
lowQualScore : . . . . . ... . . . .. . . . ....... . .. . . . . . . . .... ... .. . . . . . . ... ... .. . . . . . . ..... . ......... .. . . . .. . . . . . . ........ ...... . .... ...... ...... . . . . . .. . . . . ....... .. . . . . ....... .. . . . ... . . . ....... . ..... . . .. . . . . ... . ..... . ...... . . .. .... ... .. ... . ... . . . . . . . ... . . . . . . .. . . ....... . . . . . . . . . ............. . . .............. . . . . . . . ... . . ....... . . . . . . .... . . . . . . ... . . . . . . . . . . . . ...... . . . . .
lowQualScore : 7 7 3 7 0 555 5 5 0 55 5 0 5 0000000 5 88 5 5 2 2 0 0 0 5555 000 22 0 7 0 0 2 8 444 000 44 8 4 4 2 0 8 66666 6 666666666 22 2 8 4 00 4 0 7 8 8 8 77777777 444444 0 0000 444444 999999 0 0 0 2 0 88 2 8 0 6 8888888 00 0 0 4 0 7777777 22 7 7 8 000 8 0 4 8888888 4 44444 0 4 66 2 8 0 0 555 0 00000 2 888888 2 7 00 3333 333 33 333 3 333 7 7 2 7 3 7 0 777 0 0 0 0 0 0 00 0 0 5555555 0 7 7 0 0 5 0 0 5 0000000000000 0 0 55555555555555 0 0 0 0 0 0 0 000 0 0 0000000 0 0 5 0 5 0 5555 5 5 5 5 0 5 000 3 7 3 3 7 7 7 3 7 7 3 3 777777 7 0 0 2 2
consensus : CGTGTTCCTCTTCAGATAGGAGGCCAGCAAATCAATGCCACTATCGATACAGCTGCAGACATCACTATTATCTCGGGGGAGGTTTATA-GGTCACTGAGGCCCCGGCCCGAGATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGATGACTGCGCAGTATCTNGGAAGTCTTAATCTGAGAAT-CGGGGACTA------TGACTTT--GCACACCCGATATATGTTGGCCCCT-TACAA-GATGA-CAT----TTACTAGGAATAGATTTCCTGCGTGCACATGGTGCCGAAGTTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGGCATAAACACGACCTTTAAACTGAGTACCGAAGCGGCACTGCCAGTATTCGATGCGTTTTCGGCCCGC-AGGGTGCGAGTTCCTCCGCACACCGCGCAGGTGATTGAATGTGACTTGAGCGCAGATATGCCAGAA-CTTTATA---CTGGAGCCTGCCAGC-ATTTTCCCGCCTGGCGTAGTAGCTTCGCGGACATATAAT-CCGGCATAGTAGCTTCACGGACTTATAATGTCGCAGGTAAGAGAGCTAAACTGTGCGTTCTTAACCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGGGGAAACTGCCCCTGCTGTGTCGGTT--GAACGCACCGACCCCAAAGTGCGCCGTGTGTTTGTTG-AGG-GGGAAACACTTNTCAGCACATAGCCCCGCTCTTGGAAC--------AGGTAG------GGAAGAGCGC-GCC---TGTGGAGGTCA------AGTCTGA-G-CT-TTG-GAGCTAGTCGAGGAGTTTGCGGACGTCTTTGCAGTAGATGACCTTGACCTC-GGAAATTTTTCCAAGATCGAGCATCGCATTGACACTG-GCGATGCACTACCCGT------TAAACAGC--GGAT-GCGCCGCGNTCCAGCCGTGTTCCGGGGAGA-AGA-G---AAGGTCATCTAGACAACATGCT--GAAGGCCGGAGTCATTCGGCC-ATCT---TCTTCA-GACTGGGCGTCAGCACCGGTCCTGGTCAGGAAGAAGGATGGTAGTGTTCGCTGGTACGTGTGC-GTGGACTACAGATCCTTG-AACAAGGTGAAT-GT-TG---ACGCGTAC-----CCTTTACCACT------CATCGAGGAGTGTATGGACGCCCTANNTGGAAACCGCCGGTT---CTCG--AAGTTAGAC---GC-CAATGCGGCCTATTGGCAGATTGAAATAGCCCCAGAAGACCGGAAGAAGACGGCCTTTATAACGAAATATGGCTTATTCGAATTCACACGAGAATGGGTTTCGGTCTGTGTAACGCCCCGGCGACCTTCGCTAGGGNCAT-C-ATCTGGTGTTGCACAGACTGAACTGGAAAANAGCTNTGGCATTCCTNGACGATGTTTTGNTNCTGGGAACNTCAGNNCGGGCCCATGNAGATAACTTNCGACAGTTGTGTTTTCTTNAGCGATTCCGAGAATATGGCCTCAAATTTAAACCTCGGAAATGTGAGCTATTTAAACTTAAGGTCGAGTTCTCGGGCAGAACAGTGAGTGAGCACGGANTCGAGATGGGGGACCAGTACATNGAAGCAGCACGTGGCTGGCCTGTGCCCTGTGATGTGAAGGGTGTTGAGCGATTTTTAGGTTTCGCCAACTACCATCGCAGTTATATTCCCCAGTTTTTTTGTATTGCTGACTCCGCTGTATGCGGCAACTGGAAAAGGNGGTNTCCCGTGGGGAGATGACCAACAGGATGCCTTTGANGANCTCCTTAGGTCGATGAATAATCCTCCGGTATTAGCAATCCCGAATAGTCAAGGTCATTTTATTCTGGACACTNATGCCTCGGNTCATGCCGTNGGCGNGGAATTGAGTCAAGTCCAGAACGGGAANGANAGAACAATNGGTTATGGCAGCGCTCAAGTGCTATCANCANGGTTGATGCAACCGNCGGCTATTTGTANCACCAGGGAGGAGTTGCTGGCGGGTGCAATTCAAATTTACTTCGCCAATTCCAGCCACTACCTGACTTAGGCANGGAATTACACAGTCACAGGACCGATCATCATAGCCTGGTTTGGCTG-ATGAATTTCAAGGCATCCGCAAAATCAGATAGCTCGCTGGCTAGAAGAACTAAGCCAGTACAACATGCGGATTATCCATCGCCTAGGGAGGAAGCATTTGAATGC-TAATGCGCTATCCAGGGATATATTGGACACATGTCAGAGC-TACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCGGTGGAGGCAGGTACTGCCGCCATACGCA-TGAACGCTGGCATGAGTTTAACACCGAGGTCCACGATGTGATTCCCTAATGTCTCAGTTGTTT-CTCGGGAATCGCCTGGGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCNTTGAG-GTACTAGGCTCCACT
Reference ( family-2778 ) : CGTGTTCCTCTTCAGATAGGAGGCCAGCAAATCAATGCCACTATCGATACAGCTGCAGACATCACTATTATCTCGGGGGAGGTTTATA-GGTCACTGAGGCCCCGGCCCGAGATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGATGACTGCGCAGTATCTNGGAAGTCTTAATCTGAGAAT-CGGGGACTA------TGACTTT--GCACACCCGATATATGTTGGCCCCT-TACAA-GATGA-CAT----TTACTAGGAATAGATTTCCTGCGTGCACATGGTGCCGAAGTTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGGCATAAACACGACCTTTAAACTGAGTACCGAAGCGGCACTGCCAGTATTCGATGCGTTTTCGGCCCGC-AGGGTGCGAGTTCCTCCGCACACCGCGCAGGTGATTGAATGTGACTTGAGCGCAGATATGCCAGAAACTTTATA---CTGGAGCCTGCCAGC-ATTTTCCCGCCTGGCGTAGTAGCTTCGCGGACATATAATNCCGGCATAGTAGCTTCACGGACTTATAATGTCGCAGGTAAGAGAGCTAAACTGTGCGTTCTTAACCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGGGGAAACTGCCCCTGCTGTGTCGGTT--GAACGCACCGACCCCAAAGTGCGCCGTGTGTTTGTTG-AGG-GGGAAACACTTNTCAGCACATAGCCCCGCTCTTGGAAC--------AGGTAG------GGAAGAGCGC-GCC---TGTGGAGGTCA------AGTCTGA-G-CT-TTG-GAGCTAGTCGAGGAGTTTGCGGACGTCTTTGCAGTAGATGACCTTGACCTC-GGAAATTTTTCCAAGATCGAGCATCGCATTGACACTG-GCGATGCACTACCCGT------TAAACAGC--GGAT-GCGCCGCGNTCCAGCCGTGTTCCGGGGGGA-A---G---AAGGTCATCTAGACAACATGCT--GAAGGCCGGAGTCATTCGGCC-ATCT---TCTTCA-GACTGGGCGTCAGCACCGGTCCTGGTCAGGAAGAAGGATGGTAGTGTTCGCTGGTACGTGTGC-GTGGACTACAGATCCTTG-AACAAGGTGAAT-GT-TG---ACGCGTAC-----CCTTTACCACT------CATCGAGGAGTGTATGGACGCCCTANNTGGAAACCGCCGGTT---CTCG--AAGTTAGAC---GC-CAATGCGGCCTATTGGCAGATTGAAATAGCCCCAGAAGACCGGAAGAAGACGGCCTTTATAACGAAATATGGCTTATTCGAATTCACACGAGAATGGGTTTCGGTCTGTGTAACGCCCCGGCGACCTTCGCTAGGGNCAT-C-ATCTGGTGTTGCACAGACTGAACTGGAAAANAGCTNTGGCATTCCTNGACGATGTTTTGNTNCTGGGAACNTCAGNNCGGGCCCATGNAGATAACTTNCGACAGTTGTGTTTTCTTNAGCGATTCCGAGAATATGGCCTCAAATTTAAACCTCGGAAATGTGAGCTATTTAAACTTAAGGTCGAGTTCTCGGGCAGAACAGTGAGTGAGCACGGANTCGAGATGGGGGACCAGTACATNGAAGCAGCACGTGGCTGGCCTGTGCCCTGTGATGTGAAGGGTGTTGAGCGATTTTTAGGTTTCGCCAACTACCATCGCAGTTATATTCCCCAGTTTTTTTGTATTGCTGACTCCGCTGTATGCGGCAACTGGAAAAGGNGGTNTCCCGTGGGGAGATGACCAACAGGATGCCTTTGANGANCTCCTTAGGTCGATGAATAATCCTCCGGTATTAGCAATCCCGAATAGTCAAGGTCATTTTATTCTGGACACTNATGCCTCGGNTCATGCCGTNGGCGNGGAATTGAGTCAAGTCCAGAACGGGAANGANAGAACAATNGGTTATGGCAGCGCTCAAGTGCTATCANCANGGTTGATGCAACCGNCGGCTATTTGTANCACCAGGGAGGAGTTGCTGGCGGGTGCAATTCAAATTTACTTCGCCAATTCCAGCCACTACCTGACTTAGGCANGGAATTACACAGTCACAGGACCGATCATCATAGCCTGGTTTGGCTG-ATGAATTTCAAGGCATCCGCAAAATCAGATAGCTCGCTGGCTAGAAGAACTAAGCCAGTACAACATGCGGATTATCCATCGCCTAGGGAGGAAGCATTTGAATGC-TAATGCGCTATCCAGGGATATATTGGACACATGTCAGAGC-TACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCGGTGGAGGCAGGTACTGCCGCCATACGCA-TGAACGCTGGCATGAGTTTAACACCGAGGTCCACGATGTGATTCCCTAATGTCTCAGTTGTTT-CTCGGGAATCGCCTGGGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCNTTGAG-GTACTAGGCTCCACT
gi|1 : CGTGTTCCTCTTCAGATAGGAGGCCAGCAAATCAATGCCACTATC-ATACAGCTGCAGACATCACTATTATCTCGGGG-AGGTTTATGTGGTCA-TGAGGCCC-GGCCCGAAATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGAT-ACTGCGCAGTATCTGGGAAGTCTTA-TCTGA-AAT-CGG--ACT-------TGA--TT--G-ACACC-GATAT--GTTGGCCCTT-TACAA-GATGA-CAT----TTACTAGGAA-AGATTTCCTGCGTG-ACATGGTGC-GAAGTT-CA---GTGAAGCGCGGAAACGCTCAAG--TAAGGGCATAGATA-GACCTTTAAACTGAGTACCGAAGCAGCACTGCCAGTATTCGATGCATTTTCGGCCCGCTAGGGTGCGAGTTCC-CCGCATACCGCGCAGGTGATTGA-TGTGACTTGAGCGCAGATATGCC-GA---CTTATAACTCTGGAGCCTGCCAGCGATTTTCCCGCCTGGCGNNNNNNNNNNNNNNNNNNNNNNNNNCGGCATAGTAGCTTCACTGATTTATAATGTCGCAGGTAAGAGAGCTAAACTGTGCGTTCTTAACCCAACAGACAGGAGCTACATTTTTAAGACAGGTACCAAAGTAGGGGAAACTGTCCCTGCTGTGTCGGTT--GAACGTCCCGATCCCAAAGTGCACCGTGTGTTTGTTG-AGG-GGGAAACACTTTTCAGCACATAGCCCCGCTCTTGGAAC--------AGGTAG------GGAAGAACGC-GCC---TGTGGAGGTTA------GGTCTGAGG-CT-TTA-GAGCTAGTCAAGGAGTTTGCGGAAGTCTTTGCAGTAGATGACCTTGACCTC-GGAATTTTTTCCAAGATCGAGCATCACATTGACACTG-GCAATGCACTCCCCGT------TTAACAGC--GGAT-GCGCCATACCCCAACCGTGTTCCAGGGAGA-A---G---AAG--TATC------ATATGCTTGAAAGGCCGGAGTCATTCAGCC-ATCT---TCTTCA-GACTGGGCGTCAGCACCAGTCCTGGTTAGGAAGAAGGATGGTAGTGTT-GCTGA---GTGTGCTGTGGACTACAGG-CCTTG--ACAAGGTGACT-GT-TG---ACACGTAC-----CCTTTACCACT------CATCGAGGAGTGTATGGACACCCTATTTGGAAACCGCTGGTT---TTCG--AAGTTAGAC---GC-CAATGCGGCCTATTGGCAGATTGAAATAGCTCCAGAAGACAGGAAGAAGACAGCCTTTATAACAAAATATGGCTTATTCGAATT--CACGAGAATGGGTTTTGGTCTGTGTAACGCCCCGGCGACTTTCGCTAGGGTCAT-CAATCTGGTGTTGCACAGACTGAACTGGAAAATAGCTATGGCATTCCTTGACGATGTTTTAGTGTTGGGAACGTCAGCACGAGTCCATGAAGATAACTTGCGACAA--G----TTCTTGAGTGATTCCGAGAATATGGCCTCAAATTTAAACCTCGGAAATGTGAGCTATTCAAACTTAAGGTTGAGTTCTTGGATAGAACAGTGTGTGAGCATGGAATCGAGATGGGGGACCAGTACATAGAAGCAGTACGTGACTGGCCTGTGCCCTGTGATGTGAAGGGTGTTGAGCGATTTTTAGGTTTCGCCAACTACCATCGCAGTTATATTCCCCAGTTTTTTTGTATTGCTG-TTCCGCTGTATGCGGTAACTGGAAAAGGTGGTTTCCCGTGGGGAGATGACCAACAGGATGCCTTTGACGAACTCCTTAGGTTGATGAATAATCCTCCGGTATTAGCAATCCCGAATAGTCAAGGTCATTTTATTCTGGACATTGATGCCTCGGTTCATGCCGTAGGCGTGGAATTGAGTCAAGTCCAGAACGGGAAAGAGAGAACAATCGGTTATGGCAGCGC---AGTGCTATCAGCAGAG-------AATTGGCGG-TA-TTGTACCACCAGGGAGGAGTTGCTGGC-GGTG-A--TCAAATTTAC-TCGCCAATTCC-GTCACTACCTG-CTT-GGCAGGGAATT-CACAGT-A-AGGACCGATCATCATAGCCTGGTTTGGCTG-ATGAAATTCAA-GCATCCGCAAAATCAGATAGCTCGCTGGCTAGAAGAACTAAGCCAGTACAACATGCGGATTATCCATCGCCTAGGGAGGAAGCATTTGAATGT-TGATGTGCTATCCAGGGACATATTGGACACATGTCAGAGC-TACTCTACTAAAGTTCGGTTAGAGGATTTGCCTTGCGATGGATGCAGGTACTGCCGCCAAGCGCA-TGCACGCTGGCATGAGTTTGACACCGAGTTCGACGATGTAATTCCCC--TGTCTCAGTTGTT---TCAGGAATCGCCTGGGAGTGTGGGGAATCAGTCCGCAGTGGAAAGTAACTTTGAG-GTAATAAGCACCACT
gi|10 : ----TTATTAGGAATAGATTTCCGGTGTGCACATGGTGCCGAAGTTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGTCATAAACGCAACCTTTGAACTGGGTACCGAAGCGTCACTGTCAGTATTCAATGCGTTTTCGGCCTGC-AGGGTGCGAGTTCCTCCGCACACTGCACAGGTGATTGAATGTGACTTGAGCGCAGAAATGCCAGAA--TTTATA---TTGGAGCCTGCCAGT-ATTTTCCCGCCTAGCATAGTAGCTTCGCGGACATGTA--------------------------TATAATATCGCAGGTAAGAGAGCTAAGTTATATGTTCTTAACC
gi|11 : TATGGACAC-C-ATCTGGTGTTGCACAGACTGAACTGGAAAAAAGCTTTAGCATTCCTGGACGATGTTTTGTTTCTGGGAACTTCAGACCGGGCTCATGTAGATAACTTCCGACAGTTGTGTTTTTTTTAGCGATTCCGAGAATATGGCCTCAAATTTAAACCTTGGAAATGTGAGCTATTTAAAATTAGGGTCGAGTTCTCAAGCAGAACAGTGAGTGAGCACGGATTCGAGATGGGGGACTAGTACATCGAAGCAGCACGTGGCTG
gi|12 : TTAGATTAGCAAGTGAAGGGGCA---GGGATGACTGCGCGGTATCTTGGAAGTCTTAATCTGAGAAT-CGGGGACTA------TGACTTT--GCACACCCGATATATGTTGGCCCCT-TACAA-GATGA-CATG---TTACTAGGAATAGATTTCCTGCTTGCACATGGTGCCGAAGTTTCAT--GTGAAGCG--GAAACGCTCAAGGTCAAGGGCATAAACACAATC-------------CCGAAGCGGCACTGCCAGTATTCGATGCATTTTCGGCCCAC-AGGGTGCGAGa
gi|13 : AATGC-TAATGCGCTATCCAGGGATATATTGGACACATGTCAGAGC-TACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCAGTGGAGGCAGGTACTGCCACCATATGCA-TGAACGCTGGCATGAGTTTAACACCGAGGTCCACAATGTGATTCCCTAATGTCTCAGTTGTTT-CT--GGAATCGCCTGGGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCATTGAG-ATACTAGGCTCCACT
gi|14 : ATGCATAAGGCGCTATCCAGGGATATATTGGACATCTGTCAGAGCATACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCAGTGGAGGCAGGTACTGCCACCATATGCACTGAACGCTGGCATGAGTTTAACACCGAGGT-CACAATGTGATTCCCTAATG-CTCAGTTGTTTGCTTGGAAATCGCCT-GGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCATTGAGAATACTAGGCTCCACTcttc
gi|15 : GAGCGC-GCC---TATGGAGGTCA------AGCC------CT-TTA-CCACTCATCGACGAGTGTATGGACACCCTAGC
gi|15 : tC-----CCTTTACCACT------CATCGACGAGTGTATGGACACCCTAGCTGGAAACCGTCGGTT---CTCG--AAGCTAGAC---GC-AAATGTGACCTATTGGCAGATTAAGATAGCCCAAGAAGACCGGAAGAAGACAGTCTTTGTAACGAAATATGGCTTATTCtggaaaccgtcggttctcgaagctagacgcaaatgtgacctattggcagattaagatagcccaagaagaccggaagaagacagtctttgtaacgaaatatggcttattc
gi|16 : tgagcgcgcctatggaggtcaagAACGAAATATGGCTTATTCGAATTCAC--GAAAGTGGGTTTCGGTCTGTGTAATGCCCCGGCGACCTTCGCTAGGGCCATCC-ATCTGGTGTTGCACAGACTGAACTGGAAAA
gi|17 : TGACTTGAGCGCAGATATGCCAGA--CTTTATA---TTGGAGCCTGCCAGC-ATTTTCCCGCCTGGCGTAGTAGTTTCACGGACTTATAATGCCG
gi|18 : GTACCAAAGTGAGGGAAACTGCCCCTGCTGTGTCGGTTTCAAACGCACCGACCCCAAAGTGCACCGTGTGTTAGTTG-AGG-GGcaggtaagag
gi|2 : CGTGTTCCTCTTCAGATATGAGGCCAGCAAATCAATGCCACTATCGATACAGTTGCAGACATCACTATTACCTCGGGGGAGGTTTATA-GGTCACTGAGACCTTGGCCCGAGATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGGTGACTGTGCAGTATCTTGGGAGTCTTAATCCGAGAAT-CGGGGACTACTAGTATGACTTT--GCACACCCGATATATGTTGGCCACT-TACAA-GATGG-CATG---TCGCTAGGAATAGATTTCCTTCGTGCACATGGTGCCGAAGTTTCAC--GTGAAGTG--GGAACACTCAAGGTCAAAGGCATAAATACGACCTTTAAACTGAGTACTGAAGCGGCACTGCCAGTATTCGATGCATTTTCGACCCGC-AGGGTGCGAGCTCCCCCGCATACCGCGCAGGTGATTGAATTTGACTTGAGTGCAGATATGCCAGA--CTTTATA---CTGAAACCT---------------GCC------AGCATTTTCCCG----------CCTGGCATAGTAGCTTCACGGACTTATAATGTCGCAGGTAAGAGAGATAAACTGTGCGTTCTTAACCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGAGGAAACTGTCCTTGCTGTGTTGGTT--GTACACACCGACCCCAAAGTGCACCGTGTGTTTGTTG-AGGAAGAAAACACTTTTCAGCACATAGCTCTGCTCTTGGAAC--------AGGTAG------GGAAGAGTAC-GCC---AGTGTAGGTTA------GGTCTGAGG-CT-TTA-GAGCTAGTCAAGGAGTTTGCGGACGTCTTTGCAGAAGATGACCTTGACCTC-GGACATTTTTCTAAGATCAAGCATCGCATTGACACTG-GCGATGCACTCCCCGTTAATTATAAACAGC--GGAT-GCACCGCATCCCAGCCATGTTCCAGGGAGA-AGACG---AAGGTCATCTAGATAATATGCT--GAAGGCCGGAGTCATTCAGCC-A
gi|20 : AATTTAAACCTCGGAAATGTGAGCTAATTAAACTTAAGGTTGAGTTCTTGGGCAGATCAGTGAGTGAG
gi|21 : ---AAGGTCATCTAGACAATATGCT--GAAAGCCGGAGTCATTCAGC
gi|22 : TCGAATTCACACGAGAATGGGTTTTGGTCTGTGTAACGC
gi|23 : CCGATCATCATAGCCTGGTTTGGCTG-ATGAATTTCAAG
gi|24 : GGAAAGTAACTTAGAG-GTATTAAGCCCCACT
gi|3 : CTGGCATAGTAGCTTCAAGGACTTATAGTGCCGCAGGTAAAAGAACTAAACTG--CGTTCTTAATCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGGGGAAAC------------GTCGGTT--GAACACA------CCAAAGTGCGTCGTGTGTTTGTTGAAGG-GGAAAACACTTGTCAGCACATAGCCCCGCTCTTGGAACAGGTACTGAGGTAG------GGAAGAGCGC-GCC---GGTGGAAANCAGCACATAGCCC-C-G-CTCTTG-GAACAGGTAGAGGctt
gi|3 : GG-TGGAAAN------CAGCACATAGCCCCGCTCTTGGAAC--------AGGTAGAGGTAGGGAAGAGCGC-GCC---GGTGGAGATTA------AGTCTGA-GGCT-TTG-GAGCGAGTCAAGGAGTTTGCGGACGTCTTTGCAGTAGATGACCTTGACCTT-GGAATTTTTTCCAAGATCGAGTATCGCATCGACACTG-GCGATGCACTACCCGT------TAAACAGC--GGTT-GCGCCGCACTCCAGCCGTGTTCTAGGGGGA-AGAGG---AAGGTCATCTAGACAACATGCT--GAAGGCCGGAGTCATTCAGCC-A------TCTTCG-GACTGGGCGTCAGCACCAGTCCTGGTTAGGAAGAAGGATGGTAGTGTTCGCTA------GTGC-GTTGACTACAGAGCTTTG-AACAAAGTGAGT-GT-TAAGTACACGTAC-----CCTTAACCACT------CATCGAGGAGTtagggaagagcgcgccggtggagattaagtctgaggctttggagcgagtcaaggagtttgcggacgtctttgcagtagatgaccttgaccttggaattttttccaagatcgagtatcgcatcgacactggcgatgcactacccgttaaacagcggttgcgccgcactccagccgtgttctagggggaagaggaaggtcatctagacaacatgctgaaggccggagtcattcagccatcttcggactgggcgtcagcaccagtcctggttaggaagaaggatggtagtgttcgctagtgcgttgactacagagctttgaacaaagtgagtgttaagtacacgtacccttaaccactcatcgaggagt
gi|4 : ctggcatagtagcttcaaggacttatagtgccgcaggtaaaagaactaaactgcgttcttaatctaacagacaggagctacattattaagacaggtaccaaagtgggggaaacgtcggttgaacacaccaaagtgcgtcgtgtgtttgttgaaggggaaaacacttgtcagcacatagccccgctcttggaacaggtactgaggtagggaagagcgcgcc----TTATTAGGAATAGATTTCCGGTGTGCACATGGTGCCGAAGTTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGTCATAAACGCAACCTTTGAACTGGGTACCGAAGCGTCACTGTCAGTATTCAATGCGTTTTCGGCCTGC-AGGGTGCGAGTTCCTCCGCACACTGCACAGGTGATTGAATGTGACTTGAGCGCAGACATGCCAGAA--TTTATA---CTGGAGCCTGCCAGT-ATTTTCCCGCCTGGCATAGTAGCTTCGCGGACATATAAT------ATCGCAGCT--------------------AGGTAAGAGAGCTAAGTTATATGTTCTTAACCT----NNNNNNNNNNNNNNNNNNNNNNNNNGTACCAAAGTGAGGGAAACTGCCCCTGCTTTGTCGGTT--GAACGCACCTACCCCAAAGTGCGCCGTGTGTTAGTTG-AGG-GGG-GACACTTATCAGCACATAGCCCCGCTCTT---------------------------ATGAGCGCTGCC---TATGGAATTCA------AGCC------CT-TTACGCACTCATCGACGAGTGTATGGAC
gi|5 : GGAGTTATAGTACC-ATCTAAATCT----GAATGGGCCTCTGCACCGGTACTGGTCCAGAAAAAGGATGGTTCTGAGCGCTA-----T-TGC-GTTGACTTCAGG----------AAGGTGAATAGTCTG---ACAAAGAAAGATGCCTTT-CCACTGCCAAATATTGAAGAGTGCATGGATGCTCTTAGTGGAAAT-----GTTTACCTCAGTACATTAGACATGGCGCAA---GG-CTGTTATCAGATGGAAGTGGACCCTCATGACCGCCATAATTTGGCCTTCATAACCAAGCATGGACTGTTTGacc
gi|6 : agtttcaggaggttttcgcaagaaatgacatggatattggtcttttcaaaggaatcactcaaagtgaacacaggagaggttcagccagtccgcactaaactcagacgaaccccattaggctttgaaaagtaggaggaaacacatttggaaagcttattacataatGTGTTCCTCTTCAGATAGGAGGCCAACAAATCAATGCCACTATTGATATAGCTGCATACATCAGTATTATCTCGGGGGAGGTTTATA-GGTCACTGAGGCCCCGGCCCAAGATGGTAAGGGACATCAATGTTAGATTAGCAGGTGAAGGGGCAGGTGGAATAACTGC-CAGTATCTGGGAAGTCTT-ATCTGAGAATCCGGGGACTA------TGACTTTTGGCACACCCGAC-TATGTTGGCCCTTGTACAACGATGATCATTTTATTACTAGGAATATATTTCCTGCGTGCACCTGGTGCCAAAGTTTC--ATGTGAAGCG--GACACGCTCAAGGTCAAGGGCATAGATACGACTTTTAAACTGAGTACCAAAGCGACACTGCCAGTATTCGATGCATTTTC
gi|7 : GCTGACTCCGCTATATGCGGCAACTGGAAAAAAAGGTGTCCGATGGAGAGAT-------------CCTTTGAGGACCTCCTTAGGTCGATAAATAATCCTCCAGTAT--------------AGTCAAGGTCATTTTATTCTGGACACTCATGCCTCGGATCATGCCGTCGGCGGGGAATTAAGTCAAGTCCAGAACGGGAACGATAGAACAATAGGTTATGGCAGCGCTCAAGTGCTATCACCATGGTTGATGCAACCACCGACTATTTGTAACACCAGGAAAGAGTTGC-GGCGGGTGCAATTCAAATTTACTTTGCCAATTTCAGCCACTACCTGACTTAGGCACGGAATTACACAGTCACAGGACCGATCATCATAGCCTGGTTTGGCTGAATGAATTTCAAGGCATa
gi|8 : AAC--------AGGTAG------GGAAAAGCAC-ACC---TGTGGAGGTCA------AGTCTGATG-CT-TTG-GAGCCAGTACAGGAATTTGCCGATGTCTTTGCAGTAGATGACTTTGACCTC-AGAAAATTTTCCAAGACTGAGCATTGAATTGACACTG-GCGATGCACTACCCAT------TAAACAGT--GGAT-GCGCAGCGATCCTGCCGTGTTCTGGGGGGA-A---GAGAAAGGTCATTTAGACAACATGCT--GAAGGCCGGAGGCACTCGGCC-ATCT---TTTTCA-GACTGGGCATCAGCAT---------TCAGGAAGAAGGATGGTAGTGTTTGCTGGTACATGTAC-ATGGACTACAGATCCTTG-AACAAGGT-AAT-GC-TA---ATGCGt
gi|9 : tAAC--------AGGTAG------GGAAAAGCAC-ACCCTGTGTGGAGGTCA------AGTCTGATG-CT-T-G-GAGCCAGTACAGGAATTTGCC-ATGTCTTTGCAGTAGATGACTTT-ACCTCAGGAAAATTTTC-AAGACTGAGCATTGAAT-GACACTGTGCGATGCACTACCCAT-------ATACAGTTTGGATTGCGCAGCGATCCTGCCGTGTTCTGGGAAGAGA---G---AAGGTCATTTAGACAACATGCT--GAAGGCCGGAGGCACTCGGCCAATCT---TTTTCATGACTGGGCATCAGCATT--------TCAGGAAGAA-GATGGTAGTGTTTGCTGGTACATGTAC-ATGGACTACAGATCCTTGAAACAAGGTAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Alignments
lowQualScore : 1 1 111 1 3333333 11 1 1 1 2222 222 22 111 333333 222222222 11 22222222 111111 111111 222222 2222222 11 1 1 111 2222222 3333333 1 11 1 1 33333333333333 222222 1111 222 11 222 1 111 3333333 1 4444444444444 55555555555555 222 3333333 1 1 1 1 2222 1 1 1 1 1 222 1 1 1 1 222222 1
lowQualScore : 6 6 3 6 2 777 6 2 1 66 2 0 2 2222222 2 33 2 2 3 3 0 0 0 7777 000 99 1 0 8 7 3 00 0 444 8 0 1 0 2 3 0 111111 0 000000000 22 3 0 1 11 1 8 6 0 0 3 00000000 666666 5 9999 444444 888888 5 5 1 2 8 22 3 3 8 0 3333333 11 8 1 1 0 6 6 99 2 6 0 444 0 8 1 0000000 6 7777777 8 5 33 3 0 0 0 55555555555555 9 888888 0 0 22 2222 333 88 333 3 999 6 0 0 6 7 0 1 666 1 1 1 1 1 1 22 1 1 2222222 1 0 0 1 1 5 1 1 2 8888888888888 1 1 11111111111111 1 1 1 1 1 1 1 111 1 1 2222222 1 5 5 1 5 5 4444 5 5 5 5 1 5 111 3 6 3 3 0 0 0 3 6 0 7 7 555555 6 1 0 0 1
lowQualScore : . . . . . ... . . . .. . . . ....... . .. . . . . . . . .... ... .. . . . . . .. . ... . . . . . . . ...... . ......... .. . . . .. . . . . . . ........ ...... . .... ...... ...... . . . . . .. . . . . ....... .. . . . . . . .. . . . ... . . . ....... . ....... . . .. . . . . .............. . ...... . . .. .... ... .. ... . ... . . . . . . . ... . . . . . . .. . . ....... . . . . . . . . . ............. . . .............. . . . . . . . ... . . ....... . . . . . . .... . . . . . . ... . . . . . . . . . . . . ...... . . . . .
lowQualScore : 7 7 3 7 0 555 5 5 0 55 5 0 5 0000000 5 88 5 5 2 2 0 0 0 5555 000 22 0 7 0 0 2 66 8 000 0 8 4 4 2 0 8 555555 6 666666666 22 2 8 4 00 4 0 7 8 8 8 77777777 444444 0 0000 444444 999999 0 0 0 2 0 88 2 8 0 6 8888888 00 0 0 4 6 0 7 22 7 7 8 000 8 0 4 8888888 4 6666666 0 4 66 2 8 0 0 55555555555555 8 888888 2 7 00 3333 333 33 333 3 333 7 7 2 7 3 7 0 777 0 0 0 0 0 0 00 0 0 5555555 0 7 7 0 0 5 0 0 5 0000000000000 0 0 55555555555555 0 0 0 0 0 0 0 000 0 0 0000000 0 0 5 0 5 0 5555 5 5 5 5 0 5 000 3 7 3 3 7 7 7 3 7 7 3 3 777777 7 0 0 2 2
consensus : CGTGTTCCTCTTCAGATAGGAGGCCAGCAAATCAATGCCACTATCGATACAGCTGCAGACATCACTATTATCTCGGGGGAGGTTTATA-GGTCACTGAGGCCCCGGCCCGAGATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGATGACTGCGCAGTATCTNGGAAGTCTTAATCTGAGAAT-CGGGGACTA------TGACTTT--GCACACCCGATATATGTTGGCCCCT-TACAA-GATGA-CAT----TTACTAGGAATAGATTTCCTGCGTGCACATGGTGCCGAAGTTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGGCATAAACACGACCTTTAAACTGAGTACCGAAGCGGCACTGCCAGTATTCGATGCGTTTTCGGCCCGC-AGGGTGCGAGTTCCTCCGCACACCGCGCAGGTGATTGAATGTGACTTGAGCGCAGATATGCCAGAACTTTATA---CTGGAGCCTGCCAGC-ATTTTCCCGCCTGGCGTAGTAGCTTCGCGGACATATAATC-CGGCATAGTAGCTTCACGGACTTATAATGTCGCAGGTAAGAGAGCTAAACTGTGCGTTCTTAACCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGGGGAAACTGCCCCTGCTGTGTCGGTT--GAACGCACCGACCCCAAAGTGCGCCGTGTGTTTGTTG-AGG-GGGAAACACTTNTCAGCACATAGCCCCGCTCTTGGAAC--------AGGTAG------GGAAGAGCGC-GCC---TGTGGAGGTCA------AGTCTGA-G-CT-TTG-GAGCTAGTCGAGGAGTTTGCGGACGTCTTTGCAGTAGATGACCTTGACCTC-GGAAATTTTTCCAAGATCGAGCATCGCATTGACACTG-GCGATGCACTACCCGT------TAAACAGC--GGAT-GCGCCGCGNTCCAGCCGTGTTCCGGGGAGAAGA-G-AAGGTCATCTAGACAACATGCT--GAAGGCCGGAGTCATTCGGCC-ATCT---TCTTCA-GACTGGGCGTCAGCACCGGTCCTGGTCAGGAAGAAGGATGGTAGTGTTCGCTGGTACGTGTGC-GTGGACTACAGATCCTTG-AACAAGGTGAAT-GT-TG---AC-------GCGTACCCTTTACCACT------CATCGAGGAGTGTATGGACGCCCTANNTGGAAACCGCCGGTT---CTCG--AAGTTAGAC---GC-CAATGCGGCCTATTGGCAGATTGAAATAGCCCCAGAAGACCGGAAGAAGACGGCCTTTATAACGAAATATGGCTTATTCGAATTCACACGAGAATGGGTTTCGGTCTGTGTAACGCCCCGGCGACCTTCGCTAGGGNCAT-C-ATCTGGTGTTGCACAGACTGAACTGGAAAANAGCTNTGGCATTCCTNGACGATGTTTTGNTNCTGGGAACNTCAGNNCGGGCCCATGNAGATAACTTNCGACAGTTGTGTTTTCTTNAGCGATTCCGAGAATATGGCCTCAAATTTAAACCTCGGAAATGTGAGCTATTTAAACTTAAGGTCGAGTTCTCGGGCAGAACAGTGAGTGAGCACGGANTCGAGATGGGGGACCAGTACATNGAAGCAGCACGTGGCTGGCCTGTGCCCTGTGATGTGAAGGGTGTTGAGCGATTTTTAGGTTTCGCCAACTACCATCGCAGTTATATTCCCCAGTTTTTTTGTATTGCTGACTCCGCTGTATGCGGCAACTGGAAAAGGNGGTNTCCCGTGGGGAGATGACCAACAGGATGCCTTTGANGANCTCCTTAGGTCGATGAATAATCCTCCGGTATTAGCAATCCCGAATAGTCAAGGTCATTTTATTCTGGACACTNATGCCTCGGNTCATGCCGTNGGCGNGGAATTGAGTCAAGTCCAGAACGGGAANGANAGAACAATNGGTTATGGCAGCGCTCAAGTGCTATCANCANGGTTGATGCAACCGNCGGCTATTTGTANCACCAGGGAGGAGTTGCTGGCGGGTGCAATTCAAATTTACTTCGCCAATTCCAGCCACTACCTGACTTAGGCANGGAATTACACAGTCACAGGACCGATCATCATAGCCTGGTTTGGCTG-ATGAATTTCAAGGCATCCGCAAAATCAGATAGCTCGCTGGCTAGAAGAACTAAGCCAGTACAACATGCGGATTATCCATCGCCTAGGGAGGAAGCATTTGAATGC-TAATGCGCTATCCAGGGATATATTGGACACATGTCAGAGC-TACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCGGTGGAGGCAGGTACTGCCGCCATACGCA-TGAACGCTGGCATGAGTTTAACACCGAGGTCCACGATGTGATTCCCTAATGTCTCAGTTGTTT-CTCGGGAATCGCCTGGGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCNTTGAG-GTACTAGGCTCCACT
Reference ( family-2778 ) : CGTGTTCCTCTTCAGATAGGAGGCCAGCAAATCAATGCCACTATCGATACAGCTGCAGACATCACTATTATCTCGGGGGAGGTTTATA-GGTCACTGAGGCCCCGGCCCGAGATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGATGACTGCGCAGTATCTNGGAAGTCTTAATCTGAGAAT-CGGGGACTA------TGACTTT--GCACACCCGATATATGTTGGCCCCT-TACAA-GATGA-CAT----TTACTAGGAATAGATTTCCTGCGTGCACATGGTGCCGAAGTTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGGCATAAACACGACCTTTAAACTGAGTACCGAAGCGGCACTGCCAGTATTCGATGCGTTTTCGGCCCGC-AGGGTGCGAGTTCCTCCGCACACCGCGCAGGTGATTGAATGTGACTTGAGCGCAGATATGCCAGAACTTTATA---CTGGAGCCTGCCAGC-ATTTTCCCGCCTGGCGTAGTAGCTTCGCGGACATATAATC-CGGCATAGTAGCTTCACGGACTTATAATGTCGCAGGTAAGAGAGCTAAACTGTGCGTTCTTAACCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGGGGAAACTGCCCCTGCTGTGTCGGTT--GAACGCACCGACCCCAAAGTGCGCCGTGTGTTTGTTG-AGG-GGGAAACACTTNTCAGCACATAGCCCCGCTCTTGGAAC--------AGGTAG------GGAAGAGCGC-GCC---TGTGGAGGTCA------AGTCTGA-G-CT-TTG-GAGCTAGTCGAGGAGTTTGCGGACGTCTTTGCAGTAGATGACCTTGACCTC-GGAAATTTTTCCAAGATCGAGCATCGCATTGACACTG-GCGATGCACTACCCGT------TAAACAGC--GGAT-GCGCCGCGNTCCAGCCGTGTTCCGGGGAGAAGA-G-AAGGTCATCTAGACAACATGCT--GAAGGCCGGAGTCATTCGGCC-ATCT---TCTTCA-GACTGGGCGTCAGCACCGGTCCTGGTCAGGAAGAAGGATGGTAGTGTTCGCTGGTACGTGTGC-GTGGACTACAGATCCTTG-AACAAGGTGAAT-GT-TG---AC-------GCGTACCCTTTACCACT------CATCGAGGAGTGTATGGACGCCCTANNTGGAAACCGCCGGTT---CTCG--AAGTTAGAC---GC-CAATGCGGCCTATTGGCAGATTGAAATAGCCCCAGAAGACCGGAAGAAGACGGCCTTTATAACGAAATATGGCTTATTCGAATTCACACGAGAATGGGTTTCGGTCTGTGTAACGCCCCGGCGACCTTCGCTAGGGNCAT-C-ATCTGGTGTTGCACAGACTGAACTGGAAAANAGCTNTGGCATTCCTNGACGATGTTTTGNTNCTGGGAACNTCAGNNCGGGCCCATGNAGATAACTTNCGACAGTTGTGTTTTCTTNAGCGATTCCGAGAATATGGCCTCAAATTTAAACCTCGGAAATGTGAGCTATTTAAACTTAAGGTCGAGTTCTCGGGCAGAACAGTGAGTGAGCACGGANTCGAGATGGGGGACCAGTACATNGAAGCAGCACGTGGCTGGCCTGTGCCCTGTGATGTGAAGGGTGTTGAGCGATTTTTAGGTTTCGCCAACTACCATCGCAGTTATATTCCCCAGTTTTTTTGTATTGCTGACTCCGCTGTATGCGGCAACTGGAAAAGGNGGTNTCCCGTGGGGAGATGACCAACAGGATGCCTTTGANGANCTCCTTAGGTCGATGAATAATCCTCCGGTATTAGCAATCCCGAATAGTCAAGGTCATTTTATTCTGGACACTNATGCCTCGGNTCATGCCGTNGGCGNGGAATTGAGTCAAGTCCAGAACGGGAANGANAGAACAATNGGTTATGGCAGCGCTCAAGTGCTATCANCANGGTTGATGCAACCGNCGGCTATTTGTANCACCAGGGAGGAGTTGCTGGCGGGTGCAATTCAAATTTACTTCGCCAATTCCAGCCACTACCTGACTTAGGCANGGAATTACACAGTCACAGGACCGATCATCATAGCCTGGTTTGGCTG-ATGAATTTCAAGGCATCCGCAAAATCAGATAGCTCGCTGGCTAGAAGAACTAAGCCAGTACAACATGCGGATTATCCATCGCCTAGGGAGGAAGCATTTGAATGC-TAATGCGCTATCCAGGGATATATTGGACACATGTCAGAGC-TACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCGGTGGAGGCAGGTACTGCCGCCATACGCA-TGAACGCTGGCATGAGTTTAACACCGAGGTCCACGATGTGATTCCCTAATGTCTCAGTTGTTT-CTCGGGAATCGCCTGGGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCNTTGAG-GTACTAGGCTCCACT
gi|1 : CGTGTTCCTCTTCAGATAGGAGGCCAGCAAATCAATGCCACTATC-ATACAGCTGCAGACATCACTATTATCTCGGGG-AGGTTTATGTGGTCA-TGAGGCCC-GGCCCGAAATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGAT-ACTGCGCAGTATCTGGGAAGTCTTA-TCTGA-AAT-CGG--ACT-------TGA--TT--G-ACACC-GATAT--GTTGGCCCTT-TACAA-GATGA-CAT----TTACTAGGAA-AGATTTCCTGCGTG-ACATGGTGC-GAAGTT-CA---GTGAAGCGCGGAAACGCTCAAG--TAAGGGCATAGATA-GACCTTTAAACTGAGTACCGAAGCAGCACTGCCAGTATTCGATGCATTTTCGGCCCGCTAGGGTGCGAGTTCC-CCGCATACCGCGCAGGTGATTGA-TGTGACTTGAGCGCAGATATGCCG--ACTT-ATAACTCTGGAGCCTGCCAGCGATTTTCCCGCCTGGCGNNNNNNNNNNNNNNNNNNNNNNNNNCGGCATAGTAGCTTCACTGATTTATAATGTCGCAGGTAAGAGAGCTAAACTGTGCGTTCTTAACCCAACAGACAGGAGCTACATTTTTAAGACAGGTACCAAAGTAGGGGAAACTGTCCCTGCTGTGTCGGTT--GAACGTCCCGATCCCAAAGTGCACCGTGTGTTTGTTG-AGG-GGGAAACACTTTTCAGCACATAGCCCCGCTCTTGGAAC--------AGGTAG------GGAAGAACGC-GCC---TGTGGAGGTTA------GGTCTGAGG-CT-TTA-GAGCTAGTCAAGGAGTTTGCGGAAGTCTTTGCAGTAGATGACCTTGACCTC-GGAATTTTTTCCAAGATCGAGCATCACATTGACACTG-GCAATGCACTCCCCGT------TTAACAGC--GGAT-GCGCCATACCCCAACCGTGTTCCAGGGAGA--A-G-AAG--TATC------ATATGCTTGAAAGGCCGGAGTCATTCAGCC-ATCT---TCTTCA-GACTGGGCGTCAGCACCAGTCCTGGTTAGGAAGAAGGATGGTAGTGTT-GCTGA---GTGTGCTGTGGACTACAGG-CCTTG--ACAAGGTGACT-GT-TG---AC-------ACGTACCCTTTACCACT------CATCGAGGAGTGTATGGACACCCTATTTGGAAACCGCTGGTT---TTCG--AAGTTAGAC---GC-CAATGCGGCCTATTGGCAGATTGAAATAGCTCCAGAAGACAGGAAGAAGACAGCCTTTATAACAAAATATGGCTTATTCGAATT--CACGAGAATGGGTTTTGGTCTGTGTAACGCCCCGGCGACTTTCGCTAGGGTCAT-CAATCTGGTGTTGCACAGACTGAACTGGAAAATAGCTATGGCATTCCTTGACGATGTTTTAGTGTTGGGAACGTCAGCACGAGTCCATGAAGATAACTTGCGACAA--G----TTCTTGAGTGATTCCGAGAATATGGCCTCAAATTTAAACCTCGGAAATGTGAGCTATTCAAACTTAAGGTTGAGTTCTTGGATAGAACAGTGTGTGAGCATGGAATCGAGATGGGGGACCAGTACATAGAAGCAGTACGTGACTGGCCTGTGCCCTGTGATGTGAAGGGTGTTGAGCGATTTTTAGGTTTCGCCAACTACCATCGCAGTTATATTCCCCAGTTTTTTTGTATTGCTG-TTCCGCTGTATGCGGTAACTGGAAAAGGTGGTTTCCCGTGGGGAGATGACCAACAGGATGCCTTTGACGAACTCCTTAGGTTGATGAATAATCCTCCGGTATTAGCAATCCCGAATAGTCAAGGTCATTTTATTCTGGACATTGATGCCTCGGTTCATGCCGTAGGCGTGGAATTGAGTCAAGTCCAGAACGGGAAAGAGAGAACAATCGGTTATGGCAGCGC---AGTGCTATCAGCAGAG-------AATTGGCGG-TA-TTGTACCACCAGGGAGGAGTTGCTGGC-GGTG-A--TCAAATTTAC-TCGCCAATTCC-GTCACTACCTG-CTT-GGCAGGGAATT-CACAGT-A-AGGACCGATCATCATAGCCTGGTTTGGCTG-ATGAAATTCAA-GCATCCGCAAAATCAGATAGCTCGCTGGCTAGAAGAACTAAGCCAGTACAACATGCGGATTATCCATCGCCTAGGGAGGAAGCATTTGAATGT-TGATGTGCTATCCAGGGACATATTGGACACATGTCAGAGC-TACTCTACTAAAGTTCGGTTAGAGGATTTGCCTTGCGATGGATGCAGGTACTGCCGCCAAGCGCA-TGCACGCTGGCATGAGTTTGACACCGAGTTCGACGATGTAATTCCCC--TGTCTCAGTTGTT---TCAGGAATCGCCTGGGAGTGTGGGGAATCAGTCCGCAGTGGAAAGTAACTTTGAG-GTAATAAGCACCACT
gi|10 : ----TTATTAGGAATAGATTTCCGGTGTGCACATGGTGCCGAAGTTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGTCATAAACGCAACCTTTGAACTGGGTACCGAAGCGTCACTGTCAGTATTCAATGCGTTTTCGGCCTGC-AGGGTGCGAGTTCCTCCGCACACTGCACAGGTGATTGAATGTGACTTGAGCGCAGAAATGCCAGAA-TTTATA---TTGGAGCCTGCCAGT-ATTTTCCCGCCTAGCATAGTAGCTTCGCGGACATGTA--------------------------TATAATATCGCAGGTAAGAGAGCTAAGTTATATGTTCTTAACC
gi|11 : TATGGACAC-C-ATCTGGTGTTGCACAGACTGAACTGGAAAAAAGCTTTAGCATTCCTGGACGATGTTTTGTTTCTGGGAACTTCAGACCGGGCTCATGTAGATAACTTCCGACAGTTGTGTTTTTTTTAGCGATTCCGAGAATATGGCCTCAAATTTAAACCTTGGAAATGTGAGCTATTTAAAATTAGGGTCGAGTTCTCAAGCAGAACAGTGAGTGAGCACGGATTCGAGATGGGGGACTAGTACATCGAAGCAGCACGTGGCTG
gi|12 : TTAGATTAGCAAGTGAAGGGGCA---GGGATGACTGCGCGGTATCTTGGAAGTCTTAATCTGAGAAT-CGGGGACTA------TGACTTT--GCACACCCGATATATGTTGGCCCCT-TACAA-GATGA-CATG---TTACTAGGAATAGATTTCCTGCTTGCACATGGTGCCGAAGTTTCAT--GTGAAGCG--GAAACGCTCAAGGTCAAGGGCATAAACACAATC-------------CCGAAGCGGCACTGCCAGTATTCGATGCATTTTCGGCCCAC-AGGGTGCGAGa
gi|13 : AATGC-TAATGCGCTATCCAGGGATATATTGGACACATGTCAGAGC-TACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCAGTGGAGGCAGGTACTGCCACCATATGCA-TGAACGCTGGCATGAGTTTAACACCGAGGTCCACAATGTGATTCCCTAATGTCTCAGTTGTTT-CT--GGAATCGCCTGGGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCATTGAG-ATACTAGGCTCCACT
gi|14 : ATGCATAAGGCGCTATCCAGGGATATATTGGACATCTGTCAGAGCATACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCAGTGGAGGCAGGTACTGCCACCATATGCACTGAACGCTGGCATGAGTTTAACACCGAGGT-CACAATGTGATTCCCTAATG-CTCAGTTGTTTGCTTGGAAATCGCCT-GGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCATTGAGAATACTAGGCTCCACTcttc
gi|15 : GAGCGC-GCC---TATGGAGGTCA------AGCC------CT-TTA-CCACTCATCGACGAGTGTATGGACACCCTAGC
gi|15 : tCCCTTTACCACT------CATCGACGAGTGTATGGACACCCTAGCTGGAAACCGTCGGTT---CTCG--AAGCTAGAC---GC-AAATGTGACCTATTGGCAGATTAAGATAGCCCAAGAAGACCGGAAGAAGACAGTCTTTGTAACGAAATATGGCTTATTCtggaaaccgtcggttctcgaagctagacgcaaatgtgacctattggcagattaagatagcccaagaagaccggaagaagacagtctttgtaacgaaatatggcttattc
gi|16 : tgagcgcgcctatggaggtcaagAACGAAATATGGCTTATTCGAATTCAC--GAAAGTGGGTTTCGGTCTGTGTAATGCCCCGGCGACCTTCGCTAGGGCCATCC-ATCTGGTGTTGCACAGACTGAACTGGAAAA
gi|17 : TGACTTGAGCGCAGATATGCCAGA-CTTTATA---TTGGAGCCTGCCAGC-ATTTTCCCGCCTGGCGTAGTAGTTTCACGGACTTATAATG-CCGCA
gi|18 : GTACCAAAGTGAGGGAAACTGCCCCTGCTGTGTCGGTTTCAAACGCACCGACCCCAAAGTGCACCGTGTGTTAGTTG-AGG-GGggtaagag
gi|2 : CGTGTTCCTCTTCAGATATGAGGCCAGCAAATCAATGCCACTATCGATACAGTTGCAGACATCACTATTACCTCGGGGGAGGTTTATA-GGTCACTGAGACCTTGGCCCGAGATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGGTGACTGTGCAGTATCTTGGGAGTCTTAATCCGAGAAT-CGGGGACTACTAGTATGACTTT--GCACACCCGATATATGTTGGCCACT-TACAA-GATGG-CATG---TCGCTAGGAATAGATTTCCTTCGTGCACATGGTGCCGAAGTTTCAC--GTGAAGTG--GGAACACTCAAGGTCAAAGGCATAAATACGACCTTTAAACTGAGTACTGAAGCGGCACTGCCAGTATTCGATGCATTTTCGACCCGC-AGGGTGCGAGCTCCCCCGCATACCGCGCAGGTGATTGAATTTGACTTGAGTGCAGATATGCCAGA-CTTTATA---CTGAAACCTGCCAGC-AT-TTTCC-----------------CGC-----------C-TGGCATAGTAGCTTCACGGACTTATAATGTCGCAGGTAAGAGAGATAAACTGTGCGTTCTTAACCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGAGGAAACTGTCCTTGCTGTGTTGGTT--GTACACACCGACCCCAAAGTGCACCGTGTGTTTGTTG-AGGAAGAAAACACTTTTCAGCACATAGCTCTGCTCTTGGAAC--------AGGTAG------GGAAGAGTAC-GCC---AGTGTAGGTTA------GGTCTGAGG-CT-TTA-GAGCTAGTCAAGGAGTTTGCGGACGTCTTTGCAGAAGATGACCTTGACCTC-GGACATTTTTCTAAGATCAAGCATCGCATTGACACTG-GCGATGCACTCCCCGTTAATTATAAACAGC--GGAT-GCACCGCATCCCAGCCATGTTCCAGGGAGAAGACG-AAGGTCATCTAGATAATATGCT--GAAGGCCGGAGTCATTCAGCC-A
gi|20 : AATTTAAACCTCGGAAATGTGAGCTAATTAAACTTAAGGTTGAGTTCTTGGGCAGATCAGTGAGTGAG
gi|21 : -AAGGTCATCTAGACAATATGCT--GAAAGCCGGAGTCATTCAGC
gi|22 : TCGAATTCACACGAGAATGGGTTTTGGTCTGTGTAACGC
gi|23 : CCGATCATCATAGCCTGGTTTGGCTG-ATGAATTTCAAG
gi|24 : GGAAAGTAACTTAGAG-GTATTAAGCCCCACT
gi|3 : C-TGGCATAGTAGCTTCAAGGACTTATAGTGCCGCAGGTAAAAGAACTAAACTG--CGTTCTTAATCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGGGGAAAC------------GTCGGTT--GAACACA------CCAAAGTGCGTCGTGTGTTTGTTGAAGG-GGAAAACACTTGTCAGCACATAGCCCCGCTCTTGGAACAGGTACTGAGGTAG------GGAAGAGCGC-GCC---GGTGGAAANCAGCACATAGCCC-C-G-CTCTTG-GAACAGGTAGAGGctt
gi|3 : GG-TGGAAAN------CAGCACATAGCCCCGCTCTTGGAAC--------AGGTAGAGGTAGGGAAGAGCGC-GCC---GGTGGAGATTA------AGTCTGA-GGCT-TTG-GAGCGAGTCAAGGAGTTTGCGGACGTCTTTGCAGTAGATGACCTTGACCTT-GGAATTTTTTCCAAGATCGAGTATCGCATCGACACTG-GCGATGCACTACCCGT------TAAACAGC--GGTT-GCGCCGCACTCCAGCCGTGTTCTAGGGGGAAGAGG-AAGGTCATCTAGACAACATGCT--GAAGGCCGGAGTCATTCAGCC-A------TCTTCG-GACTGGGCGTCAGCACCAGTCCTGGTTAGGAAGAAGGATGGTAGTGTTCGCTA------GTGC-GTTGACTACAGAGCTTTG-AACAAAGTGAGT-GT-TAAGTAC-------ACGTACCCTTAACCACT------CATCGAGGAGTtagggaagagcgcgccggtggagattaagtctgaggctttggagcgagtcaaggagtttgcggacgtctttgcagtagatgaccttgaccttggaattttttccaagatcgagtatcgcatcgacactggcgatgcactacccgttaaacagcggttgcgccgcactccagccgtgttctagggggaagaggaaggtcatctagacaacatgctgaaggccggagtcattcagccatcttcggactgggcgtcagcaccagtcctggttaggaagaaggatggtagtgttcgctagtgcgttgactacagagctttgaacaaagtgagtgttaagtacacgtacccttaaccactcatcgaggagt
gi|4 : ctggcatagtagcttcaaggacttatagtgccgcaggtaaaagaactaaactgcgttcttaatctaacagacaggagctacattattaagacaggtaccaaagtgggggaaacgtcggttgaacacaccaaagtgcgtcgtgtgtttgttgaaggggaaaacacttgtcagcacatagccccgctcttggaacaggtactgaggtagggaagagcgcgcc----TTATTAGGAATAGATTTCCGGTGTGCACATGGTGCCGAAGTTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGTCATAAACGCAACCTTTGAACTGGGTACCGAAGCGTCACTGTCAGTATTCAATGCGTTTTCGGCCTGC-AGGGTGCGAGTTCCTCCGCACACTGCACAGGTGATTGAATGTGACTTGAGCGCAGACATGCCAGAA-TTTATA---CTGGAGCCTGCCAGT-ATTTTCCCGCCTGGCATAGTAGCTTCGCGGACATATAAT------ATCGCAGCT--------------------AGGTAAGAGAGCTAAGTTATATGTTCTTAACCT----NNNNNNNNNNNNNNNNNNNNNNNNNGTACCAAAGTGAGGGAAACTGCCCCTGCTTTGTCGGTT--GAACGCACCTACCCCAAAGTGCGCCGTGTGTTAGTTG-AGG-GGG-GACACTTATCAGCACATAGCCCCGCTCTT---------------------------ATGAGCGCTGCC---TATGGAATTCA------AGCC------CT-TTACGCACTCATCGACGAGTGTATGGAC
gi|5 : GGAGTTATAGTACC-ATCTAAATCT----GAATGGGCCTCTGCACCGGTACTGGTCCAGAAAAAGGATGGTTCTGAGCGCT-AT-----TGC-GTTGACTTCAGG----------AAGGTGAATAGTCTG---ACAAAGAAAG-ATGCCTTT--CCACTGCCAAATATTGAAGAGTGCATGGATGCTCTTAGTGGAAAT-----GTTTACCTCAGTACATTAGACATGGCGCAA---GG-CTGTTATCAGATGGAAGTGGACCCTCATGACCGCCATAATTTGGCCTTCATAACCAAGCATGGACTGTTTGacc
gi|6 : agtttcaggaggttttcgcaagaaatgacatggatattggtcttttcaaaggaatcactcaaagtgaacacaggagaggttcagccagtccgcactaaactcagacgaaccccattaggctttgaaaagtaggaggaaacacatttggaaagcttattacataatGTGTTCCTCTTCAGATAGGAGGCCAACAAATCAATGCCACTATTGATATAGCTGCATACATCAGTATTATCTCGGGGGAGGTTTATA-GGTCACTGAGGCCCCGGCCCAAGATGGTAAGGGACATCAATGTTAGATTAGCAGGTGAAGGGGCAGGTGGAATAACTGC-CAGTATCTGGGAAGTCTT-ATCTGAGAATCCGGGGACTA------TGACTTTTGGCACACCCGAC-TATGTTGGCCCTTGTACAACGATGATCATTTTATTACTAGGAATATATTTCCTGCGTGCACCTGGTGCCAAAGTTTC--ATGTGAAGCG--GACACGCTCAAGGTCAAGGGCATAGATACGACTTTTAAACTGAGTACCAAAGCGACACTGCCAGTATTCGATGCATTTTC
gi|7 : GCTGACTCCGCTATATGCGGCAACTGGAAAAAAAGGTGTCCGATGGAGAGAT-------------CCTTTGAGGACCTCCTTAGGTCGATAAATAATCCTCCAGTAT--------------AGTCAAGGTCATTTTATTCTGGACACTCATGCCTCGGATCATGCCGTCGGCGGGGAATTAAGTCAAGTCCAGAACGGGAACGATAGAACAATAGGTTATGGCAGCGCTCAAGTGCTATCACCATGGTTGATGCAACCACCGACTATTTGTAACACCAGGAAAGAGTTGC-GGCGGGTGCAATTCAAATTTACTTTGCCAATTTCAGCCACTACCTGACTTAGGCACGGAATTACACAGTCACAGGACCGATCATCATAGCCTGGTTTGGCTGAATGAATTTCAAGGCATa
gi|8 : AAC--------AGGTAG------GGAAAAGCAC-ACC---TGTGGAGGTCA------AGTCTGATG-CT-TTG-GAGCCAGTACAGGAATTTGCCGATGTCTTTGCAGTAGATGACTTTGACCTC-AGAAAATTTTCCAAGACTGAGCATTGAATTGACACTG-GCGATGCACTACCCAT------TAAACAGT--GGAT-GCGCAGCGATCCTGCCGTGTTCTGGGGGGAAGA-GAAAGGTCATTTAGACAACATGCT--GAAGGCCGGAGGCACTCGGCC-ATCT---TTTTCA-GACTGGGCATCAGCAT---------TCAGGAAGAAGGATGGTAGTGTTTGCTGGTACATGTAC-ATGGACTACAGATCCTTG-AACAAGGT-AAT-GC-TA---AT-------GCGt
gi|9 : tAAC--------AGGTAG------GGAAAAGCAC-ACCCTGTGTGGAGGTCA------AGTCTGATG-CT-T-G-GAGCCAGTACAGGAATTTGCC-ATGTCTTTGCAGTAGATGACTTT-ACCTCAGGAAAATTTTC-AAGACTGAGCATTGAAT-GACACTGTGCGATGCACTACCCAT-------ATACAGTTTGGATTGCGCAGCGATCCTGCCGTGTTCTGGGAAGA-GA-G-AAGGTCATTTAGACAACATGCT--GAAGGCCGGAGGCACTCGGCCAATCT---TTTTCATGACTGGGCATCAGCATT--------TCAGGAAGAA-GATGGTAGTGTTTGCTGGTACATGTAC-ATGGACTACAGATCCTTGAAACAAGGTAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Alignments
lowQualScore : 1 1 111 1 3333333 11 1 1 1 2222 222 22 111 333333 222222222 11 22222222 111111 111111 222222 2222222 11 1 1 111 2222222 3333333 1 11 1 1 33333333333333 222222 1111 222 11 222 1 111 3333333 1 4444444444444 55555555555555 222 3333333 1 1 1 1 2222 1 1 1 1 1 222 1 1 1 1 222222 1
lowQualScore : 6 6 3 6 2 777 6 2 1 66 2 0 2 2222222 2 33 2 2 3 3 0 0 0 7777 000 99 1 0 8 7 3 00 0 444 8 0 1 0 2 3 0 111111 0 000000000 22 3 0 1 11 1 8 6 0 0 3 00000000 666666 5 9999 444444 888888 5 5 1 2 8 22 3 3 8 0 3333333 11 8 1 1 0 6 6 99 2 6 0 444 0 8 1 0000000 6 7777777 8 5 33 3 0 0 0 55555555555555 9 888888 0 0 22 2222 333 88 333 3 999 6 0 0 6 7 0 1 666 1 1 1 1 1 1 22 1 1 2222222 1 0 0 1 1 5 1 1 2 8888888888888 1 1 11111111111111 1 1 1 1 1 1 1 111 1 1 2222222 1 5 5 1 5 5 4444 5 5 5 5 1 5 111 3 6 3 3 0 0 0 3 6 0 7 7 555555 6 1 0 0 1
lowQualScore : . . . . . ... . . . .. . . . ....... . .. . . . . . . . .... ... .. . . . . . .. . ... . . . . . . . ...... . ......... .. . . . .. . . . . . . ........ ...... . .... ...... ...... . . . . . .. . . . . ....... .. . . . . . . .. . . . ... . . . ....... . ....... . . .. . . . . .............. . ...... . . .. .... ... .. ... . ... . . . . . . . ... . . . . . . .. . . ....... . . . . . . . . . ............. . . .............. . . . . . . . ... . . ....... . . . . . . .... . . . . . . ... . . . . . . . . . . . . ...... . . . . .
lowQualScore : 7 7 3 7 0 555 5 5 0 55 5 0 5 0000000 5 88 5 5 2 2 0 0 0 5555 000 22 0 7 0 0 2 66 8 000 0 8 4 4 2 0 8 555555 6 666666666 22 2 8 4 00 4 0 7 8 8 8 77777777 444444 0 0000 444444 999999 0 0 0 2 0 88 2 8 0 6 8888888 00 0 0 4 6 0 7 22 7 7 8 000 8 0 4 8888888 4 6666666 0 4 66 2 8 0 0 55555555555555 8 888888 2 7 00 3333 333 33 333 3 333 7 7 2 7 3 7 0 777 0 0 0 0 0 0 00 0 0 5555555 0 7 7 0 0 5 0 0 5 0000000000000 0 0 55555555555555 0 0 0 0 0 0 0 000 0 0 0000000 0 0 5 0 5 0 5555 5 5 5 5 0 5 000 3 7 3 3 7 7 7 3 7 7 3 3 777777 7 0 0 2 2
consensus : CGTGTTCCTCTTCAGATAGGAGGCCAGCAAATCAATGCCACTATCGATACAGCTGCAGACATCACTATTATCTCGGGGGAGGTTTATA-GGTCACTGAGGCCCCGGCCCGAGATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGATGACTGCGCAGTATCTNGGAAGTCTTAATCTGAGAAT-CGGGGACTA------TGACTTT--GCACACCCGATATATGTTGGCCCCT-TACAA-GATGA-CAT----TTACTAGGAATAGATTTCCTGCGTGCACATGGTGCCGAAGTTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGGCATAAACACGACCTTTAAACTGAGTACCGAAGCGGCACTGCCAGTATTCGATGCGTTTTCGGCCCGC-AGGGTGCGAGTTCCTCCGCACACCGCGCAGGTGATTGAATGTGACTTGAGCGCAGATATGCCAGAACTTTATA---CTGGAGCCTGCCAGC-ATTTTCCCGCCTGGCGTAGTAGCTTCGCGGACATATAATC-CGGCATAGTAGCTTCACGGACTTATAATGTCGCAGGTAAGAGAGCTAAACTGTGCGTTCTTAACCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGGGGAAACTGCCCCTGCTGTGTCGGTT--GAACGCACCGACCCCAAAGTGCGCCGTGTGTTTGTTG-AGG-GGGAAACACTTNTCAGCACATAGCCCCGCTCTTGGAAC--------AGGTAG------GGAAGAGCGC-GCC---TGTGGAGGTCA------AGTCTGA-G-CT-TTG-GAGCTAGTCGAGGAGTTTGCGGACGTCTTTGCAGTAGATGACCTTGACCTC-GGAAATTTTTCCAAGATCGAGCATCGCATTGACACTG-GCGATGCACTACCCGT------TAAACAGC--GGAT-GCGCCGCGNTCCAGCCGTGTTCCGGGGAGAAGA-G-AAGGTCATCTAGACAACATGCT--GAAGGCCGGAGTCATTCGGCC-ATCT---TCTTCA-GACTGGGCGTCAGCACCGGTCCTGGTCAGGAAGAAGGATGGTAGTGTTCGCTGGTACGTGTGC-GTGGACTACAGATCCTTG-AACAAGGTGAAT-GT-TG---AC-------GCGTACCCTTTACCACT------CATCGAGGAGTGTATGGACGCCCTANNTGGAAACCGCCGGTT---CTCG--AAGTTAGAC---GC-CAATGCGGCCTATTGGCAGATTGAAATAGCCCCAGAAGACCGGAAGAAGACGGCCTTTATAACGAAATATGGCTTATTCGAATTCACACGAGAATGGGTTTCGGTCTGTGTAACGCCCCGGCGACCTTCGCTAGGGNCAT-C-ATCTGGTGTTGCACAGACTGAACTGGAAAANAGCTNTGGCATTCCTNGACGATGTTTTGNTNCTGGGAACNTCAGNNCGGGCCCATGNAGATAACTTNCGACAGTTGTGTTTTCTTNAGCGATTCCGAGAATATGGCCTCAAATTTAAACCTCGGAAATGTGAGCTATTTAAACTTAAGGTCGAGTTCTCGGGCAGAACAGTGAGTGAGCACGGANTCGAGATGGGGGACCAGTACATNGAAGCAGCACGTGGCTGGCCTGTGCCCTGTGATGTGAAGGGTGTTGAGCGATTTTTAGGTTTCGCCAACTACCATCGCAGTTATATTCCCCAGTTTTTTTGTATTGCTGACTCCGCTGTATGCGGCAACTGGAAAAGGNGGTNTCCCGTGGGGAGATGACCAACAGGATGCCTTTGANGANCTCCTTAGGTCGATGAATAATCCTCCGGTATTAGCAATCCCGAATAGTCAAGGTCATTTTATTCTGGACACTNATGCCTCGGNTCATGCCGTNGGCGNGGAATTGAGTCAAGTCCAGAACGGGAANGANAGAACAATNGGTTATGGCAGCGCTCAAGTGCTATCANCANGGTTGATGCAACCGNCGGCTATTTGTANCACCAGGGAGGAGTTGCTGGCGGGTGCAATTCAAATTTACTTCGCCAATTCCAGCCACTACCTGACTTAGGCANGGAATTACACAGTCACAGGACCGATCATCATAGCCTGGTTTGGCTG-ATGAATTTCAAGGCATCCGCAAAATCAGATAGCTCGCTGGCTAGAAGAACTAAGCCAGTACAACATGCGGATTATCCATCGCCTAGGGAGGAAGCATTTGAATGC-TAATGCGCTATCCAGGGATATATTGGACACATGTCAGAGC-TACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCGGTGGAGGCAGGTACTGCCGCCATACGCA-TGAACGCTGGCATGAGTTTAACACCGAGGTCCACGATGTGATTCCCTAATGTCTCAGTTGTTT-CTCGGGAATCGCCTGGGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCNTTGAG-GTACTAGGCTCCACT
Reference ( family-2778 ) : CGTGTTCCTCTTCAGATAGGAGGCCAGCAAATCAATGCCACTATCGATACAGCTGCAGACATCACTATTATCTCGGGGGAGGTTTATA-GGTCACTGAGGCCCCGGCCCGAGATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGATGACTGCGCAGTATCTNGGAAGTCTTAATCTGAGAAT-CGGGGACTA------TGACTTT--GCACACCCGATATATGTTGGCCCCT-TACAA-GATGA-CAT----TTACTAGGAATAGATTTCCTGCGTGCACATGGTGCCGAAGTTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGGCATAAACACGACCTTTAAACTGAGTACCGAAGCGGCACTGCCAGTATTCGATGCGTTTTCGGCCCGC-AGGGTGCGAGTTCCTCCGCACACCGCGCAGGTGATTGAATGTGACTTGAGCGCAGATATGCCAGAACTTTATA---CTGGAGCCTGCCAGC-ATTTTCCCGCCTGGCGTAGTAGCTTCGCGGACATATAATC-CGGCATAGTAGCTTCACGGACTTATAATGTCGCAGGTAAGAGAGCTAAACTGTGCGTTCTTAACCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGGGGAAACTGCCCCTGCTGTGTCGGTT--GAACGCACCGACCCCAAAGTGCGCCGTGTGTTTGTTG-AGG-GGGAAACACTTNTCAGCACATAGCCCCGCTCTTGGAAC--------AGGTAG------GGAAGAGCGC-GCC---TGTGGAGGTCA------AGTCTGA-G-CT-TTG-GAGCTAGTCGAGGAGTTTGCGGACGTCTTTGCAGTAGATGACCTTGACCTC-GGAAATTTTTCCAAGATCGAGCATCGCATTGACACTG-GCGATGCACTACCCGT------TAAACAGC--GGAT-GCGCCGCGNTCCAGCCGTGTTCCGGGGAGAAGA-G-AAGGTCATCTAGACAACATGCT--GAAGGCCGGAGTCATTCGGCC-ATCT---TCTTCA-GACTGGGCGTCAGCACCGGTCCTGGTCAGGAAGAAGGATGGTAGTGTTCGCTGGTACGTGTGC-GTGGACTACAGATCCTTG-AACAAGGTGAAT-GT-TG---AC-------GCGTACCCTTTACCACT------CATCGAGGAGTGTATGGACGCCCTANNTGGAAACCGCCGGTT---CTCG--AAGTTAGAC---GC-CAATGCGGCCTATTGGCAGATTGAAATAGCCCCAGAAGACCGGAAGAAGACGGCCTTTATAACGAAATATGGCTTATTCGAATTCACACGAGAATGGGTTTCGGTCTGTGTAACGCCCCGGCGACCTTCGCTAGGGNCAT-C-ATCTGGTGTTGCACAGACTGAACTGGAAAANAGCTNTGGCATTCCTNGACGATGTTTTGNTNCTGGGAACNTCAGNNCGGGCCCATGNAGATAACTTNCGACAGTTGTGTTTTCTTNAGCGATTCCGAGAATATGGCCTCAAATTTAAACCTCGGAAATGTGAGCTATTTAAACTTAAGGTCGAGTTCTCGGGCAGAACAGTGAGTGAGCACGGANTCGAGATGGGGGACCAGTACATNGAAGCAGCACGTGGCTGGCCTGTGCCCTGTGATGTGAAGGGTGTTGAGCGATTTTTAGGTTTCGCCAACTACCATCGCAGTTATATTCCCCAGTTTTTTTGTATTGCTGACTCCGCTGTATGCGGCAACTGGAAAAGGNGGTNTCCCGTGGGGAGATGACCAACAGGATGCCTTTGANGANCTCCTTAGGTCGATGAATAATCCTCCGGTATTAGCAATCCCGAATAGTCAAGGTCATTTTATTCTGGACACTNATGCCTCGGNTCATGCCGTNGGCGNGGAATTGAGTCAAGTCCAGAACGGGAANGANAGAACAATNGGTTATGGCAGCGCTCAAGTGCTATCANCANGGTTGATGCAACCGNCGGCTATTTGTANCACCAGGGAGGAGTTGCTGGCGGGTGCAATTCAAATTTACTTCGCCAATTCCAGCCACTACCTGACTTAGGCANGGAATTACACAGTCACAGGACCGATCATCATAGCCTGGTTTGGCTG-ATGAATTTCAAGGCATCCGCAAAATCAGATAGCTCGCTGGCTAGAAGAACTAAGCCAGTACAACATGCGGATTATCCATCGCCTAGGGAGGAAGCATTTGAATGC-TAATGCGCTATCCAGGGATATATTGGACACATGTCAGAGC-TACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCGGTGGAGGCAGGTACTGCCGCCATACGCA-TGAACGCTGGCATGAGTTTAACACCGAGGTCCACGATGTGATTCCCTAATGTCTCAGTTGTTT-CTCGGGAATCGCCTGGGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCNTTGAG-GTACTAGGCTCCACT
gi|1 : CGTGTTCCTCTTCAGATAGGAGGCCAGCAAATCAATGCCACTATC-ATACAGCTGCAGACATCACTATTATCTCGGGG-AGGTTTATGTGGTCA-TGAGGCCC-GGCCCGAAATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGAT-ACTGCGCAGTATCTGGGAAGTCTTA-TCTGA-AAT-CGG--ACT-------TGA--TT--G-ACACC-GATAT--GTTGGCCCTT-TACAA-GATGA-CAT----TTACTAGGAA-AGATTTCCTGCGTG-ACATGGTGC-GAAGTT-CA---GTGAAGCGCGGAAACGCTCAAG--TAAGGGCATAGATA-GACCTTTAAACTGAGTACCGAAGCAGCACTGCCAGTATTCGATGCATTTTCGGCCCGCTAGGGTGCGAGTTCC-CCGCATACCGCGCAGGTGATTGA-TGTGACTTGAGCGCAGATATGCCG--ACTT-ATAACTCTGGAGCCTGCCAGCGATTTTCCCGCCTGGCGNNNNNNNNNNNNNNNNNNNNNNNNNCGGCATAGTAGCTTCACTGATTTATAATGTCGCAGGTAAGAGAGCTAAACTGTGCGTTCTTAACCCAACAGACAGGAGCTACATTTTTAAGACAGGTACCAAAGTAGGGGAAACTGTCCCTGCTGTGTCGGTT--GAACGTCCCGATCCCAAAGTGCACCGTGTGTTTGTTG-AGG-GGGAAACACTTTTCAGCACATAGCCCCGCTCTTGGAAC--------AGGTAG------GGAAGAACGC-GCC---TGTGGAGGTTA------GGTCTGAGG-CT-TTA-GAGCTAGTCAAGGAGTTTGCGGAAGTCTTTGCAGTAGATGACCTTGACCTC-GGAATTTTTTCCAAGATCGAGCATCACATTGACACTG-GCAATGCACTCCCCGT------TTAACAGC--GGAT-GCGCCATACCCCAACCGTGTTCCAGGGAGA--A-G-AAG--TATC------ATATGCTTGAAAGGCCGGAGTCATTCAGCC-ATCT---TCTTCA-GACTGGGCGTCAGCACCAGTCCTGGTTAGGAAGAAGGATGGTAGTGTT-GCTGA---GTGTGCTGTGGACTACAGG-CCTTG--ACAAGGTGACT-GT-TG---AC-------ACGTACCCTTTACCACT------CATCGAGGAGTGTATGGACACCCTATTTGGAAACCGCTGGTT---TTCG--AAGTTAGAC---GC-CAATGCGGCCTATTGGCAGATTGAAATAGCTCCAGAAGACAGGAAGAAGACAGCCTTTATAACAAAATATGGCTTATTCGAATT--CACGAGAATGGGTTTTGGTCTGTGTAACGCCCCGGCGACTTTCGCTAGGGTCAT-CAATCTGGTGTTGCACAGACTGAACTGGAAAATAGCTATGGCATTCCTTGACGATGTTTTAGTGTTGGGAACGTCAGCACGAGTCCATGAAGATAACTTGCGACAA--G----TTCTTGAGTGATTCCGAGAATATGGCCTCAAATTTAAACCTCGGAAATGTGAGCTATTCAAACTTAAGGTTGAGTTCTTGGATAGAACAGTGTGTGAGCATGGAATCGAGATGGGGGACCAGTACATAGAAGCAGTACGTGACTGGCCTGTGCCCTGTGATGTGAAGGGTGTTGAGCGATTTTTAGGTTTCGCCAACTACCATCGCAGTTATATTCCCCAGTTTTTTTGTATTGCTG-TTCCGCTGTATGCGGTAACTGGAAAAGGTGGTTTCCCGTGGGGAGATGACCAACAGGATGCCTTTGACGAACTCCTTAGGTTGATGAATAATCCTCCGGTATTAGCAATCCCGAATAGTCAAGGTCATTTTATTCTGGACATTGATGCCTCGGTTCATGCCGTAGGCGTGGAATTGAGTCAAGTCCAGAACGGGAAAGAGAGAACAATCGGTTATGGCAGCGC---AGTGCTATCAGCAGAG-------AATTGGCGG-TA-TTGTACCACCAGGGAGGAGTTGCTGGC-GGTG-A--TCAAATTTAC-TCGCCAATTCC-GTCACTACCTG-CTT-GGCAGGGAATT-CACAGT-A-AGGACCGATCATCATAGCCTGGTTTGGCTG-ATGAAATTCAA-GCATCCGCAAAATCAGATAGCTCGCTGGCTAGAAGAACTAAGCCAGTACAACATGCGGATTATCCATCGCCTAGGGAGGAAGCATTTGAATGT-TGATGTGCTATCCAGGGACATATTGGACACATGTCAGAGC-TACTCTACTAAAGTTCGGTTAGAGGATTTGCCTTGCGATGGATGCAGGTACTGCCGCCAAGCGCA-TGCACGCTGGCATGAGTTTGACACCGAGTTCGACGATGTAATTCCCC--TGTCTCAGTTGTT---TCAGGAATCGCCTGGGAGTGTGGGGAATCAGTCCGCAGTGGAAAGTAACTTTGAG-GTAATAAGCACCACT
gi|10 : ----TTATTAGGAATAGATTTCCGGTGTGCACATGGTGCCGAAGTTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGTCATAAACGCAACCTTTGAACTGGGTACCGAAGCGTCACTGTCAGTATTCAATGCGTTTTCGGCCTGC-AGGGTGCGAGTTCCTCCGCACACTGCACAGGTGATTGAATGTGACTTGAGCGCAGAAATGCCAGAA-TTTATA---TTGGAGCCTGCCAGT-ATTTTCCCGCCTAGCATAGTAGCTTCGCGGACATGTA--------------------------TATAATATCGCAGGTAAGAGAGCTAAGTTATATGTTCTTAACC
gi|11 : TATGGACAC-C-ATCTGGTGTTGCACAGACTGAACTGGAAAAAAGCTTTAGCATTCCTGGACGATGTTTTGTTTCTGGGAACTTCAGACCGGGCTCATGTAGATAACTTCCGACAGTTGTGTTTTTTTTAGCGATTCCGAGAATATGGCCTCAAATTTAAACCTTGGAAATGTGAGCTATTTAAAATTAGGGTCGAGTTCTCAAGCAGAACAGTGAGTGAGCACGGATTCGAGATGGGGGACTAGTACATCGAAGCAGCACGTGGCTG
gi|12 : TTAGATTAGCAAGTGAAGGGGCA---GGGATGACTGCGCGGTATCTTGGAAGTCTTAATCTGAGAAT-CGGGGACTA------TGACTTT--GCACACCCGATATATGTTGGCCCCT-TACAA-GATGA-CATG---TTACTAGGAATAGATTTCCTGCTTGCACATGGTGCCGAAGTTTCAT--GTGAAGCG--GAAACGCTCAAGGTCAAGGGCATAAACACAATC-------------CCGAAGCGGCACTGCCAGTATTCGATGCATTTTCGGCCCAC-AGGGTGCGAGa
gi|13 : AATGC-TAATGCGCTATCCAGGGATATATTGGACACATGTCAGAGC-TACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCAGTGGAGGCAGGTACTGCCACCATATGCA-TGAACGCTGGCATGAGTTTAACACCGAGGTCCACAATGTGATTCCCTAATGTCTCAGTTGTTT-CT--GGAATCGCCTGGGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCATTGAG-ATACTAGGCTCCACT
gi|14 : ATGCATAAGGCGCTATCCAGGGATATATTGGACATCTGTCAGAGCATACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCAGTGGAGGCAGGTACTGCCACCATATGCACTGAACGCTGGCATGAGTTTAACACCGAGGT-CACAATGTGATTCCCTAATG-CTCAGTTGTTTGCTTGGAAATCGCCT-GGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCATTGAGAATACTAGGCTCCACTcttc
gi|15 : GAGCGC-GCC---TATGGAGGTCA------AGCC------CT-TTA-CCACTCATCGACGAGTGTATGGACACCCTAGC
gi|15 : tCCCTTTACCACT------CATCGACGAGTGTATGGACACCCTAGCTGGAAACCGTCGGTT---CTCG--AAGCTAGAC---GC-AAATGTGACCTATTGGCAGATTAAGATAGCCCAAGAAGACCGGAAGAAGACAGTCTTTGTAACGAAATATGGCTTATTCtggaaaccgtcggttctcgaagctagacgcaaatgtgacctattggcagattaagatagcccaagaagaccggaagaagacagtctttgtaacgaaatatggcttattc
gi|16 : tgagcgcgcctatggaggtcaagAACGAAATATGGCTTATTCGAATTCAC--GAAAGTGGGTTTCGGTCTGTGTAATGCCCCGGCGACCTTCGCTAGGGCCATCC-ATCTGGTGTTGCACAGACTGAACTGGAAAA
gi|17 : TGACTTGAGCGCAGATATGCCAGA-CTTTATA---TTGGAGCCTGCCAGC-ATTTTCCCGCCTGGCGTAGTAGTTTCACGGACTTATAATG-CCGCA
gi|18 : GTACCAAAGTGAGGGAAACTGCCCCTGCTGTGTCGGTTTCAAACGCACCGACCCCAAAGTGCACCGTGTGTTAGTTG-AGG-GGggtaagag
gi|2 : CGTGTTCCTCTTCAGATATGAGGCCAGCAAATCAATGCCACTATCGATACAGTTGCAGACATCACTATTACCTCGGGGGAGGTTTATA-GGTCACTGAGACCTTGGCCCGAGATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGGTGACTGTGCAGTATCTTGGGAGTCTTAATCCGAGAAT-CGGGGACTACTAGTATGACTTT--GCACACCCGATATATGTTGGCCACT-TACAA-GATGG-CATG---TCGCTAGGAATAGATTTCCTTCGTGCACATGGTGCCGAAGTTTCAC--GTGAAGTG--GGAACACTCAAGGTCAAAGGCATAAATACGACCTTTAAACTGAGTACTGAAGCGGCACTGCCAGTATTCGATGCATTTTCGACCCGC-AGGGTGCGAGCTCCCCCGCATACCGCGCAGGTGATTGAATTTGACTTGAGTGCAGATATGCCAGA-CTTTATA---CTGAAACCTGCCAGC-AT-TTTCC-----------------CGC-----------C-TGGCATAGTAGCTTCACGGACTTATAATGTCGCAGGTAAGAGAGATAAACTGTGCGTTCTTAACCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGAGGAAACTGTCCTTGCTGTGTTGGTT--GTACACACCGACCCCAAAGTGCACCGTGTGTTTGTTG-AGGAAGAAAACACTTTTCAGCACATAGCTCTGCTCTTGGAAC--------AGGTAG------GGAAGAGTAC-GCC---AGTGTAGGTTA------GGTCTGAGG-CT-TTA-GAGCTAGTCAAGGAGTTTGCGGACGTCTTTGCAGAAGATGACCTTGACCTC-GGACATTTTTCTAAGATCAAGCATCGCATTGACACTG-GCGATGCACTCCCCGTTAATTATAAACAGC--GGAT-GCACCGCATCCCAGCCATGTTCCAGGGAGAAGACG-AAGGTCATCTAGATAATATGCT--GAAGGCCGGAGTCATTCAGCC-A
gi|20 : AATTTAAACCTCGGAAATGTGAGCTAATTAAACTTAAGGTTGAGTTCTTGGGCAGATCAGTGAGTGAG
gi|21 : -AAGGTCATCTAGACAATATGCT--GAAAGCCGGAGTCATTCAGC
gi|22 : TCGAATTCACACGAGAATGGGTTTTGGTCTGTGTAACGC
gi|23 : CCGATCATCATAGCCTGGTTTGGCTG-ATGAATTTCAAG
gi|24 : GGAAAGTAACTTAGAG-GTATTAAGCCCCACT
gi|3 : C-TGGCATAGTAGCTTCAAGGACTTATAGTGCCGCAGGTAAAAGAACTAAACTG--CGTTCTTAATCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGGGGAAAC------------GTCGGTT--GAACACA------CCAAAGTGCGTCGTGTGTTTGTTGAAGG-GGAAAACACTTGTCAGCACATAGCCCCGCTCTTGGAACAGGTACTGAGGTAG------GGAAGAGCGC-GCC---GGTGGAAANCAGCACATAGCCC-C-G-CTCTTG-GAACAGGTAGAGGctt
gi|3 : GG-TGGAAAN------CAGCACATAGCCCCGCTCTTGGAAC--------AGGTAGAGGTAGGGAAGAGCGC-GCC---GGTGGAGATTA------AGTCTGA-GGCT-TTG-GAGCGAGTCAAGGAGTTTGCGGACGTCTTTGCAGTAGATGACCTTGACCTT-GGAATTTTTTCCAAGATCGAGTATCGCATCGACACTG-GCGATGCACTACCCGT------TAAACAGC--GGTT-GCGCCGCACTCCAGCCGTGTTCTAGGGGGAAGAGG-AAGGTCATCTAGACAACATGCT--GAAGGCCGGAGTCATTCAGCC-A------TCTTCG-GACTGGGCGTCAGCACCAGTCCTGGTTAGGAAGAAGGATGGTAGTGTTCGCTA------GTGC-GTTGACTACAGAGCTTTG-AACAAAGTGAGT-GT-TAAGTAC-------ACGTACCCTTAACCACT------CATCGAGGAGTtagggaagagcgcgccggtggagattaagtctgaggctttggagcgagtcaaggagtttgcggacgtctttgcagtagatgaccttgaccttggaattttttccaagatcgagtatcgcatcgacactggcgatgcactacccgttaaacagcggttgcgccgcactccagccgtgttctagggggaagaggaaggtcatctagacaacatgctgaaggccggagtcattcagccatcttcggactgggcgtcagcaccagtcctggttaggaagaaggatggtagtgttcgctagtgcgttgactacagagctttgaacaaagtgagtgttaagtacacgtacccttaaccactcatcgaggagt
gi|4 : ctggcatagtagcttcaaggacttatagtgccgcaggtaaaagaactaaactgcgttcttaatctaacagacaggagctacattattaagacaggtaccaaagtgggggaaacgtcggttgaacacaccaaagtgcgtcgtgtgtttgttgaaggggaaaacacttgtcagcacatagccccgctcttggaacaggtactgaggtagggaagagcgcgcc----TTATTAGGAATAGATTTCCGGTGTGCACATGGTGCCGAAGTTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGTCATAAACGCAACCTTTGAACTGGGTACCGAAGCGTCACTGTCAGTATTCAATGCGTTTTCGGCCTGC-AGGGTGCGAGTTCCTCCGCACACTGCACAGGTGATTGAATGTGACTTGAGCGCAGACATGCCAGAA-TTTATA---CTGGAGCCTGCCAGT-ATTTTCCCGCCTGGCATAGTAGCTTCGCGGACATATAAT------ATCGCAGCT--------------------AGGTAAGAGAGCTAAGTTATATGTTCTTAACCT----NNNNNNNNNNNNNNNNNNNNNNNNNGTACCAAAGTGAGGGAAACTGCCCCTGCTTTGTCGGTT--GAACGCACCTACCCCAAAGTGCGCCGTGTGTTAGTTG-AGG-GGG-GACACTTATCAGCACATAGCCCCGCTCTT---------------------------ATGAGCGCTGCC---TATGGAATTCA------AGCC------CT-TTACGCACTCATCGACGAGTGTATGGAC
gi|5 : GGAGTTATAGTACC-ATCTAAATCT----GAATGGGCCTCTGCACCGGTACTGGTCCAGAAAAAGGATGGTTCTGAGCGCT-AT-----TGC-GTTGACTTCAGG----------AAGGTGAATAGTCTG---ACAAAGAAAG-ATGCCTTT--CCACTGCCAAATATTGAAGAGTGCATGGATGCTCTTAGTGGAAAT-----GTTTACCTCAGTACATTAGACATGGCGCAA---GG-CTGTTATCAGATGGAAGTGGACCCTCATGACCGCCATAATTTGGCCTTCATAACCAAGCATGGACTGTTTGacc
gi|6 : agtttcaggaggttttcgcaagaaatgacatggatattggtcttttcaaaggaatcactcaaagtgaacacaggagaggttcagccagtccgcactaaactcagacgaaccccattaggctttgaaaagtaggaggaaacacatttggaaagcttattacataatGTGTTCCTCTTCAGATAGGAGGCCAACAAATCAATGCCACTATTGATATAGCTGCATACATCAGTATTATCTCGGGGGAGGTTTATA-GGTCACTGAGGCCCCGGCCCAAGATGGTAAGGGACATCAATGTTAGATTAGCAGGTGAAGGGGCAGGTGGAATAACTGC-CAGTATCTGGGAAGTCTT-ATCTGAGAATCCGGGGACTA------TGACTTTTGGCACACCCGAC-TATGTTGGCCCTTGTACAACGATGATCATTTTATTACTAGGAATATATTTCCTGCGTGCACCTGGTGCCAAAGTTTC--ATGTGAAGCG--GACACGCTCAAGGTCAAGGGCATAGATACGACTTTTAAACTGAGTACCAAAGCGACACTGCCAGTATTCGATGCATTTTC
gi|7 : GCTGACTCCGCTATATGCGGCAACTGGAAAAAAAGGTGTCCGATGGAGAGAT-------------CCTTTGAGGACCTCCTTAGGTCGATAAATAATCCTCCAGTAT--------------AGTCAAGGTCATTTTATTCTGGACACTCATGCCTCGGATCATGCCGTCGGCGGGGAATTAAGTCAAGTCCAGAACGGGAACGATAGAACAATAGGTTATGGCAGCGCTCAAGTGCTATCACCATGGTTGATGCAACCACCGACTATTTGTAACACCAGGAAAGAGTTGC-GGCGGGTGCAATTCAAATTTACTTTGCCAATTTCAGCCACTACCTGACTTAGGCACGGAATTACACAGTCACAGGACCGATCATCATAGCCTGGTTTGGCTGAATGAATTTCAAGGCATa
gi|8 : AAC--------AGGTAG------GGAAAAGCAC-ACC---TGTGGAGGTCA------AGTCTGATG-CT-TTG-GAGCCAGTACAGGAATTTGCCGATGTCTTTGCAGTAGATGACTTTGACCTC-AGAAAATTTTCCAAGACTGAGCATTGAATTGACACTG-GCGATGCACTACCCAT------TAAACAGT--GGAT-GCGCAGCGATCCTGCCGTGTTCTGGGGGGAAGA-GAAAGGTCATTTAGACAACATGCT--GAAGGCCGGAGGCACTCGGCC-ATCT---TTTTCA-GACTGGGCATCAGCAT---------TCAGGAAGAAGGATGGTAGTGTTTGCTGGTACATGTAC-ATGGACTACAGATCCTTG-AACAAGGT-AAT-GC-TA---AT-------GCGt
gi|9 : tAAC--------AGGTAG------GGAAAAGCAC-ACCCTGTGTGGAGGTCA------AGTCTGATG-CT-T-G-GAGCCAGTACAGGAATTTGCC-ATGTCTTTGCAGTAGATGACTTT-ACCTCAGGAAAATTTTC-AAGACTGAGCATTGAAT-GACACTGTGCGATGCACTACCCAT-------ATACAGTTTGGATTGCGCAGCGATCCTGCCGTGTTCTGGGAAGA-GA-G-AAGGTCATTTAGACAACATGCT--GAAGGCCGGAGGCACTCGGCCAATCT---TTTTCATGACTGGGCATCAGCATT--------TCAGGAAGAA-GATGGTAGTGTTTGCTGGTACATGTAC-ATGGACTACAGATCCTTGAAACAAGGTAA
blockSeqs : G G . C T GGT G G T AA G C G ACTAGTA C TG C C A A G C T TTTA TAT . T . T A A . . A G A ATGCC TCACGGACT TA A C TC A A A T AGGTACTG AGGTAG T CTGT GCACAT TGAGG C C T G A AT T T T TAATTAT TT T T A A C A . A A AAA T G CAGTCCT C GGTACAT . G AA G A C ACAAAGAAAG T GCCAAA GC CGTC TAC GT ATG G TGT C C A A CC A T G T T T AC T C TTGTGTT T T C A A G G . G C . C A C G C T A TCA C T TTGATGC C C T A . G CAAT T A A A C A CAC A G A A C C A T TGCTTG G A A T
blockSeqs : G G . C C . G G T AA G . G A C . C C A A . . . G TAT . G . C A C . . G G T CTG TCAAGGACT TG A T . T . . G . . . T . TGAGG . . T A . TT C C . T . . C A A G . . A . . . C CGGTACT C GGTACAT . T A G . . AGTACAC A . AG . . . . . . . C . C C . G . . . . A . TCT . A . T
blockSeqs : . A . G A G . G A C . C C . A . . . G AT . G . T A C . . A G A AT . TA . C . T . . A . . . A . TGATG . . A G . AA C T . T . . A T A . . . A . . . A T T AT . T A A . . ATGC . . T . C
blockSeqs : . T . T . A . . . . . . . . . . A . . . . . . G . TGATG . . G A . AA . . . . . . A T . . . . T . . . A . T A . . . .
blockSeqs : . C . A . . . . G . CCG . . T G . . G .
blockSeqs : . . . T . . . . C C G
blockSeqs : . T . . . . C C
blockSeqCons : AT* ** N* *** TG**** ** GAT**** A*
originalCons : CGTGTTCCTCTTCAGATAGGAGGCCAGCAAATCAATGCCACTATCGATACAGCTGCAGACATCACTATTATCTCGGGGGAGGTTTATA-GGTCACTGAGGCCCCGGCCCGAGATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGATGACTGCGCAGTATCTNGGAAGTCTTAATCTGAGAAT-CGGGGACTA------TGACTTT--GCACACCCGATATATGTTGGCCCCT-TACAA-GATGA-CAT----TTACTAGGAATAGATTTCCTGCGTGCACATGGTGCCGAAGTTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGGCATAAACACGACCTTTAAACTGAGTACCGAAGCGGCACTGCCAGTATTCGATGCGTTTTCGGCCCGC-AGGGTGCGAGTTCCTCCGCACACCGCGCAGGTGATTGAATGTGACTTGAGCGCAGATATGCCAGAACTTTATA---CTGGAGCCTGCCAGC-ATTTTCCCGCCTGGCGTAGTAGCTTCGCGGACATATAATC-CGGCATAGTAGCTTCACGGACTTATAATGTCGCAGGTAAGAGAGCTAAACTGTGCGTTCTTAACCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGGGGAAACTGCCCCTGCTGTGTCGGTT--GAACGCACCGACCCCAAAGTGCGCCGTGTGTTTGTTG-AGG-GGGAAACACTTNTCAGCACATAGCCCCGCTCTTGGAAC--------AGGTAG------GGAAGAGCGC-GCC---TGTGGAGGTCA------AGTCTGA-G-CT-TTG-GAGCTAGTCGAGGAGTTTGCGGACGTCTTTGCAGTAGATGACCTTGACCTC-GGAAATTTTTCCAAGATCGAGCATCGCATTGACACTG-GCGATGCACTACCCGT------TAAACAGC--GGAT-GCGCCGCGNTCCAGCCGTGTTCCGGGGAGAAGA-G-AAGGTCATCTAGACAACATGCT--GAAGGCCGGAGTCATTCGGCC-ATCT---TCTTCA-GACTGGGCGTCAGCACCGGTCCTGGTCAGGAAGAAGGATGGTAGTGTTCGCTGGTACGTGTGC-GTGGACTACAGATCCTTG-AACAAGGTGAAT-GT-TG---AC-------GCGTACCCTTTACCACT------CATCGAGGAGTGTATGGACGCCCTANNTGGAAACCGCCGGTT---CTCG--AAGTTAGAC---GC-CAATGCGGCCTATTGGCAGATTGAAATAGCCCCAGAAGACCGGAAGAAGACGGCCTTTATAACGAAATATGGCTTATTCGAATTCACACGAGAATGGGTTTCGGTCTGTGTAACGCCCCGGCGACCTTCGCTAGGGNCAT-C-ATCTGGTGTTGCACAGACTGAACTGGAAAANAGCTNTGGCATTCCTNGACGATGTTTTGNTNCTGGGAACNTCAGNNCGGGCCCATGNAGATAACTTNCGACAGTTGTGTTTTCTTNAGCGATTCCGAGAATATGGCCTCAAATTTAAACCTCGGAAATGTGAGCTATTTAAACTTAAGGTCGAGTTCTCGGGCAGAACAGTGAGTGAGCACGGANTCGAGATGGGGGACCAGTACATNGAAGCAGCACGTGGCTGGCCTGTGCCCTGTGATGTGAAGGGTGTTGAGCGATTTTTAGGTTTCGCCAACTACCATCGCAGTTATATTCCCCAGTTTTTTTGTATTGCTGACTCCGCTGTATGCGGCAACTGGAAAAGGNGGTNTCCCGTGGGGAGATGACCAACAGGATGCCTTTGANGANCTCCTTAGGTCGATGAATAATCCTCCGGTATTAGCAATCCCGAATAGTCAAGGTCATTTTATTCTGGACACTNATGCCTCGGNTCATGCCGTNGGCGNGGAATTGAGTCAAGTCCAGAACGGGAANGANAGAACAATNGGTTATGGCAGCGCTCAAGTGCTATCANCANGGTTGATGCAACCGNCGGCTATTTGTANCACCAGGGAGGAGTTGCTGGCGGGTGCAATTCAAATTTACTTCGCCAATTCCAGCCACTACCTGACTTAGGCANGGAATTACACAGTCACAGGACCGATCATCATAGCCTGGTTTGGCTG-ATGAATTTCAAGGCATCCGCAAAATCAGATAGCTCGCTGGCTAGAAGAACTAAGCCAGTACAACATGCGGATTATCCATCGCCTAGGGAGGAAGCATTTGAATGC-TAATGCGCTATCCAGGGATATATTGGACACATGTCAGAGC-TACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCGGTGGAGGCAGGTACTGCCGCCATACGCA-TGAACGCTGGCATGAGTTTAACACCGAGGTCCACGATGTGATTCCCTAATGTCTCAGTTGTTT-CTCGGGAATCGCCTGGGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCNTTGAG-GTACTAGGCTCCACT
finalCons : CGTGTTCCTCTTCAGATAGGAGGCCAGCAAATCAATGCCACTATCGATACAGCTGCAGACATCACTATTATCTCGGGGGAGGTTTATA-GGTCACTGAGGCCCCGGCCCGAGATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGATGACTGCGCAGTATCTNGGAAGTCTTAATCTGAGAAT-CGGGGACTA------TGACTTT--GCACACCCGATATATGTTGGCCCCT-TACAA-GATGA-CAT----TTACTAGGAATAGATTTCCTGCGTGCACATGGTGCCGAAGTTTCAAT-GTGAAGCG--GGAACGCTCAAGGTCAAGGGCATAAACACGACCTTTAAACTGAGTACCGAAGCGGCACTGCCAGTATTCGATGCGTTTTCGGCCCGC-AGGGTGCGAGTTCCTCCGCACACCGCGCAGGTGATTGAATGTGACTTGAGCGCAGATATGCCAGAN-TTTATA---CTGGAGCCTGCCAGC-ATTTTCCCGCCTGGCGTAGTAGCTTCGCGGACATATATG----GCATAGTAGCTTCACGGACTTATAATGTCGCAGGTAAGAGAGCTAAACTGTGCGTTCTTAACCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGGGGAAACTGCCCCTGCTGTGTCGGTT--GAACGCACCGACCCCAAAGTGCGCCGTGTGTTTGTTG-AGG-GGGAAACACTTNTCAGCACATAGCCCCGCTCTTGGAAC--------AGGTAG------GGAAGAGCGC-GCC---TGTGGAGGTCA------AGTCTGA-G-CT-TTG-GAGCTAGTCGAGGAGTTTGCGGACGTCTTTGCAGTAGATGACCTTGACCTC-GGAAATTTTTCCAAGATCGAGCATCGCATTGACACTG-GCGATGCACTACCCGT------TAAACAGC--GGAT-GCGCCGCGNTCCAGCCGTGTTCCGGGGAGAAGA-G-AAGGTCATCTAGACAACATGCT--GAAGGCCGGAGTCATTCGGCC-ATCT---TCTTCA-GACTGGGCGTCAGCACCGGTCCTGGTCAGGAAGAAGGATGGTAGTGTTCGCTGAT----GTGC-GTGGACTACAGATCCTTGA-ACAAGGTGAAT-GT-TG---AC-------GCGTACCCTTTACCACT------CATCGAGGAGTGTATGGACGCCCTANNTGGAAACCGCCGGTT---CTCG--AAGTTAGAC---GC-CAATGCGGCCTATTGGCAGATTGAAATAGCCCCAGAAGACCGGAAGAAGACGGCCTTTATAACGAAATATGGCTTATTCGAATTCACACGAGAATGGGTTTCGGTCTGTGTAACGCCCCGGCGACCTTCGCTAGGGNCAT-C-ATCTGGTGTTGCACAGACTGAACTGGAAAANAGCTNTGGCATTCCTNGACGATGTTTTGNTNCTGGGAACNTCAGNNCGGGCCCATGNAGATAACTTNCGACAGTTGTGTTTTCTTNAGCGATTCCGAGAATATGGCCTCAAATTTAAACCTCGGAAATGTGAGCTATTTAAACTTAAGGTCGAGTTCTCGGGCAGAACAGTGAGTGAGCACGGANTCGAGATGGGGGACCAGTACATNGAAGCAGCACGTGGCTGGCCTGTGCCCTGTGATGTGAAGGGTGTTGAGCGATTTTTAGGTTTCGCCAACTACCATCGCAGTTATATTCCCCAGTTTTTTTGTATTGCTGACTCCGCTGTATGCGGCAACTGGAAAAGGNGGTNTCCCGTGGGGAGATGACCAACAGGATGCCTTTGANGANCTCCTTAGGTCGATGAATAATCCTCCGGTATTAGCAATCCCGAATAGTCAAGGTCATTTTATTCTGGACACTNATGCCTCGGNTCATGCCGTNGGCGNGGAATTGAGTCAAGTCCAGAACGGGAANGANAGAACAATNGGTTATGGCAGCGCTCAAGTGCTATCANCANGGTTGATGCAACCGNCGGCTATTTGTANCACCAGGGAGGAGTTGCTGGCGGGTGCAATTCAAATTTACTTCGCCAATTCCAGCCACTACCTGACTTAGGCANGGAATTACACAGTCACAGGACCGATCATCATAGCCTGGTTTGGCTG-ATGAATTTCAAGGCATCCGCAAAATCAGATAGCTCGCTGGCTAGAAGAACTAAGCCAGTACAACATGCGGATTATCCATCGCCTAGGGAGGAAGCATTTGAATGC-TAATGCGCTATCCAGGGATATATTGGACACATGTCAGAGC-TACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCGGTGGAGGCAGGTACTGCCGCCATACGCA-TGAACGCTGGCATGAGTTTAACACCGAGGTCCACGATGTGATTCCCTAATGTCTCAGTTGTTT-CTCGGGAATCGCCTGGGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCNTTGAG-GTACTAGGCTCCACT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
Alignments
lowQualScore : 1 1 111 1 3333333 11 1 1 1 2222 22 111 77777777777777777777777777777777777 11 22222222 111111 111111 222222 2222222 11 1 1 111 2222222 4444444 1 11 1 1 33333333333333 222222 1111 222 11 222 1 111 3333333 1 4444444444444 55555555555555 222 3333333 1 1 1 1 2222 1 1 1 1 1 222 1 1 1 1 222222 1
lowQualScore : 6 6 3 6 2 777 6 2 1 66 2 0 2 2222222 2 33 2 2 3 3 0 0 0 7777 88 99 1 0 8 7 3 0 1 0 444 8 0 1 0 22222222222222222222222222222222222 1 22 3 0 1 11 1 8 6 0 0 3 00000000 666666 5 9999 444444 888888 5 5 1 2 8 22 3 3 8 0 3333333 11 8 1 1 0 6 6 99 2 6 0 444 0 8 1 0000000 6 6666666 8 5 33 3 0 0 0 55555555555555 9 888888 0 0 22 2222 333 88 333 3 999 6 0 0 6 7 0 1 666 1 1 1 1 1 1 22 1 1 2222222 1 0 0 1 1 5 1 1 2 8888888888888 1 1 11111111111111 1 1 1 1 1 1 1 111 1 1 2222222 1 5 5 1 5 5 4444 5 5 5 5 1 5 111 3 6 3 3 0 0 0 3 6 0 7 7 555555 6 1 0 0 1
lowQualScore : . . . . . ... . . . .. . . . ....... . .. . . . . . . . .... .. .. . . . . . . . . ... . . . . ................................... . .. . . . .. . . . . . . ........ ...... . .... ...... ...... . . . . . .. . . . . ....... .. . . . . . . .. . . . ... . . . ....... . ....... . . .. . . . . .............. . ...... . . .. .... ... .. ... . ... . . . . . . . ... . . . . . . .. . . ....... . . . . . . . . . ............. . . .............. . . . . . . . ... . . ....... . . . . . . .... . . . . . . ... . . . . . . . . . . . . ...... . . . . .
lowQualScore : 7 7 3 7 0 555 5 5 0 55 5 0 5 0000000 5 88 5 5 2 2 0 0 0 5555 88 22 0 7 0 0 2 8 0 8 000 0 8 4 4 11111111111111111111111111111111111 0 22 2 8 4 00 4 0 7 8 8 8 77777777 444444 0 0000 444444 999999 0 0 0 2 0 88 2 8 0 6 8888888 00 0 0 4 6 0 7 22 7 7 8 000 8 0 4 8888888 4 0000000 0 4 66 2 8 0 0 55555555555555 8 888888 2 7 00 3333 333 33 333 3 333 7 7 2 7 3 7 0 777 0 0 0 0 0 0 00 0 0 5555555 0 7 7 0 0 5 0 0 5 0000000000000 0 0 55555555555555 0 0 0 0 0 0 0 000 0 0 0000000 0 0 5 0 5 0 5555 5 5 5 5 0 5 000 3 7 3 3 7 7 7 3 7 7 3 3 777777 7 0 0 2 2
consensus : CGTGTTCCTCTTCAGATAGGAGGCCAGCAAATCAATGCCACTATCGATACAGCTGCAGACATCACTATTATCTCGGGGGAGGTTTATA-GGTCACTGAGGCCCCGGCCCGAGATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGATGACTGCGCAGTATCTNGGAAGTCTTAATCTGAGAAT-CGGGGACTA------TGACTTT--GCACACCCGATATATGTTGGCCCCT-TACAA-GATGA-CAT----TTACTAGGAATAGATTTCCTGCGTGCACATGGTGCCGAAGTTTCA-ATGTGAAGCG--GGAACGCTCAAGGTCAAGGGCATAAACACGACCTTTAAACTGAGTACCGAAGCGGCACTGCCAGTATTCGATGCGTTTTCGGCCCGC-AGGGTGCGAGTTCCTCCGCACACCGCGCAGGTGATTGAATGTGACTTGAGCGCAGATATGCCAGACTTTATA---CTGGAGCCTGCCAGC-ATTTTCCCGCCTGGCGTAGTAGCTTCGCGGACATGTAT----GGCATAGTAGCTTCACGGACTTATAATGTCGCAGGTAAGAGAGCTAAACTGTGCGTTCTTAACCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGGGGAAACTGCCCCTGCTGTGTCGGTT--GAACGCACCGACCCCAAAGTGCGCCGTGTGTTTGTTG-AGG-GGGAAACACTTNTCAGCACATAGCCCCGCTCTTGGAAC--------AGGTAG------GGAAGAGCGC-GCC---TGTGGAGGTCA------AGTCTGA-G-CT-TTG-GAGCTAGTCGAGGAGTTTGCGGACGTCTTTGCAGTAGATGACCTTGACCTC-GGAAATTTTTCCAAGATCGAGCATCGCATTGACACTG-GCGATGCACTACCCGT------TAAACAGC--GGAT-GCGCCGCGNTCCAGCCGTGTTCCGGGGAGAAGA-G-AAGGTCATCTAGACAACATGCT--GAAGGCCGGAGTCATTCGGCC-ATCT---TCTTCA-GACTGGGCGTCAGCACCGGTCCTGGTCAGGAAGAAGGATGGTAGTGTTCGCTGGTACA-TGTGC-GTGGACTACAGATCCTTG-AACAAGGTGAAT-GT-TG---AC-------GCGTACCCTTTACCACT------CATCGAGGAGTGTATGGACGCCCTANNTGGAAACCGCCGGTT---CTCG--AAGTTAGAC---GC-CAATGCGGCCTATTGGCAGATTGAAATAGCCCCAGAAGACCGGAAGAAGACGGCCTTTATAACGAAATATGGCTTATTCGAATTCACACGAGAATGGGTTTCGGTCTGTGTAACGCCCCGGCGACCTTCGCTAGGGNCAT-C-ATCTGGTGTTGCACAGACTGAACTGGAAAANAGCTNTGGCATTCCTNGACGATGTTTTGNTNCTGGGAACNTCAGNNCGGGCCCATGNAGATAACTTNCGACAGTTGTGTTTTCTTNAGCGATTCCGAGAATATGGCCTCAAATTTAAACCTCGGAAATGTGAGCTATTTAAACTTAAGGTCGAGTTCTCGGGCAGAACAGTGAGTGAGCACGGANTCGAGATGGGGGACCAGTACATNGAAGCAGCACGTGGCTGGCCTGTGCCCTGTGATGTGAAGGGTGTTGAGCGATTTTTAGGTTTCGCCAACTACCATCGCAGTTATATTCCCCAGTTTTTTTGTATTGCTGACTCCGCTGTATGCGGCAACTGGAAAAGGNGGTNTCCCGTGGGGAGATGACCAACAGGATGCCTTTGANGANCTCCTTAGGTCGATGAATAATCCTCCGGTATTAGCAATCCCGAATAGTCAAGGTCATTTTATTCTGGACACTNATGCCTCGGNTCATGCCGTNGGCGNGGAATTGAGTCAAGTCCAGAACGGGAANGANAGAACAATNGGTTATGGCAGCGCTCAAGTGCTATCANCANGGTTGATGCAACCGNCGGCTATTTGTANCACCAGGGAGGAGTTGCTGGCGGGTGCAATTCAAATTTACTTCGCCAATTCCAGCCACTACCTGACTTAGGCANGGAATTACACAGTCACAGGACCGATCATCATAGCCTGGTTTGGCTG-ATGAATTTCAAGGCATCCGCAAAATCAGATAGCTCGCTGGCTAGAAGAACTAAGCCAGTACAACATGCGGATTATCCATCGCCTAGGGAGGAAGCATTTGAATGC-TAATGCGCTATCCAGGGATATATTGGACACATGTCAGAGC-TACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCGGTGGAGGCAGGTACTGCCGCCATACGCA-TGAACGCTGGCATGAGTTTAACACCGAGGTCCACGATGTGATTCCCTAATGTCTCAGTTGTTT-CTCGGGAATCGCCTGGGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCNTTGAG-GTACTAGGCTCCACT
Reference ( family-2778 ) : CGTGTTCCTCTTCAGATAGGAGGCCAGCAAATCAATGCCACTATCGATACAGCTGCAGACATCACTATTATCTCGGGGGAGGTTTATA-GGTCACTGAGGCCCCGGCCCGAGATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGATGACTGCGCAGTATCTNGGAAGTCTTAATCTGAGAAT-CGGGGACTA------TGACTTT--GCACACCCGATATATGTTGGCCCCT-TACAA-GATGA-CAT----TTACTAGGAATAGATTTCCTGCGTGCACATGGTGCCGAAGTTTCA-ATGTGAAGCG--GGAACGCTCAAGGTCAAGGGCATAAACACGACCTTTAAACTGAGTACCGAAGCGGCACTGCCAGTATTCGATGCGTTTTCGGCCCGC-AGGGTGCGAGTTCCTCCGCACACCGCGCAGGTGATTGAATGTGACTTGAGCGCAGATATGCCAGANTTTATA---CTGGAGCCTGCCAGC-ATTTTCCCGCCTGGCGTAGTAGCTTCGCGGACATATAT----GGCATAGTAGCTTCACGGACTTATAATGTCGCAGGTAAGAGAGCTAAACTGTGCGTTCTTAACCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGGGGAAACTGCCCCTGCTGTGTCGGTT--GAACGCACCGACCCCAAAGTGCGCCGTGTGTTTGTTG-AGG-GGGAAACACTTNTCAGCACATAGCCCCGCTCTTGGAAC--------AGGTAG------GGAAGAGCGC-GCC---TGTGGAGGTCA------AGTCTGA-G-CT-TTG-GAGCTAGTCGAGGAGTTTGCGGACGTCTTTGCAGTAGATGACCTTGACCTC-GGAAATTTTTCCAAGATCGAGCATCGCATTGACACTG-GCGATGCACTACCCGT------TAAACAGC--GGAT-GCGCCGCGNTCCAGCCGTGTTCCGGGGAGAAGA-G-AAGGTCATCTAGACAACATGCT--GAAGGCCGGAGTCATTCGGCC-ATCT---TCTTCA-GACTGGGCGTCAGCACCGGTCCTGGTCAGGAAGAAGGATGGTAGTGTTCGCTG----A-TGTGC-GTGGACTACAGATCCTTG-AACAAGGTGAAT-GT-TG---AC-------GCGTACCCTTTACCACT------CATCGAGGAGTGTATGGACGCCCTANNTGGAAACCGCCGGTT---CTCG--AAGTTAGAC---GC-CAATGCGGCCTATTGGCAGATTGAAATAGCCCCAGAAGACCGGAAGAAGACGGCCTTTATAACGAAATATGGCTTATTCGAATTCACACGAGAATGGGTTTCGGTCTGTGTAACGCCCCGGCGACCTTCGCTAGGGNCAT-C-ATCTGGTGTTGCACAGACTGAACTGGAAAANAGCTNTGGCATTCCTNGACGATGTTTTGNTNCTGGGAACNTCAGNNCGGGCCCATGNAGATAACTTNCGACAGTTGTGTTTTCTTNAGCGATTCCGAGAATATGGCCTCAAATTTAAACCTCGGAAATGTGAGCTATTTAAACTTAAGGTCGAGTTCTCGGGCAGAACAGTGAGTGAGCACGGANTCGAGATGGGGGACCAGTACATNGAAGCAGCACGTGGCTGGCCTGTGCCCTGTGATGTGAAGGGTGTTGAGCGATTTTTAGGTTTCGCCAACTACCATCGCAGTTATATTCCCCAGTTTTTTTGTATTGCTGACTCCGCTGTATGCGGCAACTGGAAAAGGNGGTNTCCCGTGGGGAGATGACCAACAGGATGCCTTTGANGANCTCCTTAGGTCGATGAATAATCCTCCGGTATTAGCAATCCCGAATAGTCAAGGTCATTTTATTCTGGACACTNATGCCTCGGNTCATGCCGTNGGCGNGGAATTGAGTCAAGTCCAGAACGGGAANGANAGAACAATNGGTTATGGCAGCGCTCAAGTGCTATCANCANGGTTGATGCAACCGNCGGCTATTTGTANCACCAGGGAGGAGTTGCTGGCGGGTGCAATTCAAATTTACTTCGCCAATTCCAGCCACTACCTGACTTAGGCANGGAATTACACAGTCACAGGACCGATCATCATAGCCTGGTTTGGCTG-ATGAATTTCAAGGCATCCGCAAAATCAGATAGCTCGCTGGCTAGAAGAACTAAGCCAGTACAACATGCGGATTATCCATCGCCTAGGGAGGAAGCATTTGAATGC-TAATGCGCTATCCAGGGATATATTGGACACATGTCAGAGC-TACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCGGTGGAGGCAGGTACTGCCGCCATACGCA-TGAACGCTGGCATGAGTTTAACACCGAGGTCCACGATGTGATTCCCTAATGTCTCAGTTGTTT-CTCGGGAATCGCCTGGGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCNTTGAG-GTACTAGGCTCCACT
gi|1 : CGTGTTCCTCTTCAGATAGGAGGCCAGCAAATCAATGCCACTATC-ATACAGCTGCAGACATCACTATTATCTCGGGG-AGGTTTATGTGGTCA-TGAGGCCC-GGCCCGAAATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGAT-ACTGCGCAGTATCTGGGAAGTCTTA-TCTGA-AAT-CGG--ACT-------TGA--TT--G-ACACC-GATAT--GTTGGCCCTT-TACAA-GATGA-CAT----TTACTAGGAA-AGATTTCCTGCGTG-ACATGGTGC-GAAGTT-CA---GTGAAGCGCGGAAACGCTCAAG--TAAGGGCATAGATA-GACCTTTAAACTGAGTACCGAAGCAGCACTGCCAGTATTCGATGCATTTTCGGCCCGCTAGGGTGCGAGTTCC-CCGCATACCGCGCAGGTGATTGA-TGTGACTTGAGCGCAGATATGCC-GACTT-ATAACTCTGGAGCCTGCCAGCGATTTTCCCGCCTGGCGNNNNNNNNNNNNNNNNNNNNNNNNNCGGCATAGTAGCTTCACTGATTTATAATGTCGCAGGTAAGAGAGCTAAACTGTGCGTTCTTAACCCAACAGACAGGAGCTACATTTTTAAGACAGGTACCAAAGTAGGGGAAACTGTCCCTGCTGTGTCGGTT--GAACGTCCCGATCCCAAAGTGCACCGTGTGTTTGTTG-AGG-GGGAAACACTTTTCAGCACATAGCCCCGCTCTTGGAAC--------AGGTAG------GGAAGAACGC-GCC---TGTGGAGGTTA------GGTCTGAGG-CT-TTA-GAGCTAGTCAAGGAGTTTGCGGAAGTCTTTGCAGTAGATGACCTTGACCTC-GGAATTTTTTCCAAGATCGAGCATCACATTGACACTG-GCAATGCACTCCCCGT------TTAACAGC--GGAT-GCGCCATACCCCAACCGTGTTCCAGGGAGA--A-G-AAG--TATC------ATATGCTTGAAAGGCCGGAGTCATTCAGCC-ATCT---TCTTCA-GACTGGGCGTCAGCACCAGTCCTGGTTAGGAAGAAGGATGGTAGTGTT-GCTG----AGTGTGCTGTGGACTACAGG-CCTTG--ACAAGGTGACT-GT-TG---AC-------ACGTACCCTTTACCACT------CATCGAGGAGTGTATGGACACCCTATTTGGAAACCGCTGGTT---TTCG--AAGTTAGAC---GC-CAATGCGGCCTATTGGCAGATTGAAATAGCTCCAGAAGACAGGAAGAAGACAGCCTTTATAACAAAATATGGCTTATTCGAATT--CACGAGAATGGGTTTTGGTCTGTGTAACGCCCCGGCGACTTTCGCTAGGGTCAT-CAATCTGGTGTTGCACAGACTGAACTGGAAAATAGCTATGGCATTCCTTGACGATGTTTTAGTGTTGGGAACGTCAGCACGAGTCCATGAAGATAACTTGCGACAA--G----TTCTTGAGTGATTCCGAGAATATGGCCTCAAATTTAAACCTCGGAAATGTGAGCTATTCAAACTTAAGGTTGAGTTCTTGGATAGAACAGTGTGTGAGCATGGAATCGAGATGGGGGACCAGTACATAGAAGCAGTACGTGACTGGCCTGTGCCCTGTGATGTGAAGGGTGTTGAGCGATTTTTAGGTTTCGCCAACTACCATCGCAGTTATATTCCCCAGTTTTTTTGTATTGCTG-TTCCGCTGTATGCGGTAACTGGAAAAGGTGGTTTCCCGTGGGGAGATGACCAACAGGATGCCTTTGACGAACTCCTTAGGTTGATGAATAATCCTCCGGTATTAGCAATCCCGAATAGTCAAGGTCATTTTATTCTGGACATTGATGCCTCGGTTCATGCCGTAGGCGTGGAATTGAGTCAAGTCCAGAACGGGAAAGAGAGAACAATCGGTTATGGCAGCGC---AGTGCTATCAGCAGAG-------AATTGGCGG-TA-TTGTACCACCAGGGAGGAGTTGCTGGC-GGTG-A--TCAAATTTAC-TCGCCAATTCC-GTCACTACCTG-CTT-GGCAGGGAATT-CACAGT-A-AGGACCGATCATCATAGCCTGGTTTGGCTG-ATGAAATTCAA-GCATCCGCAAAATCAGATAGCTCGCTGGCTAGAAGAACTAAGCCAGTACAACATGCGGATTATCCATCGCCTAGGGAGGAAGCATTTGAATGT-TGATGTGCTATCCAGGGACATATTGGACACATGTCAGAGC-TACTCTACTAAAGTTCGGTTAGAGGATTTGCCTTGCGATGGATGCAGGTACTGCCGCCAAGCGCA-TGCACGCTGGCATGAGTTTGACACCGAGTTCGACGATGTAATTCCCC--TGTCTCAGTTGTT---TCAGGAATCGCCTGGGAGTGTGGGGAATCAGTCCGCAGTGGAAAGTAACTTTGAG-GTAATAAGCACCACT
gi|10 : ----TTATTAGGAATAGATTTCCGGTGTGCACATGGTGCCGAAGTTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGTCATAAACGCAACCTTTGAACTGGGTACCGAAGCGTCACTGTCAGTATTCAATGCGTTTTCGGCCTGC-AGGGTGCGAGTTCCTCCGCACACTGCACAGGTGATTGAATGTGACTTGAGCGCAGAAATGCCAGAATTTATA---TTGGAGCCTGCCAGT-ATTTTCCCGCCTAGCATAGTAGCTTCGCGGACATGTA--------------------------TATAATATCGCAGGTAAGAGAGCTAAGTTATATGTTCTTAACC
gi|11 : TATGGACAC-C-ATCTGGTGTTGCACAGACTGAACTGGAAAAAAGCTTTAGCATTCCTGGACGATGTTTTGTTTCTGGGAACTTCAGACCGGGCTCATGTAGATAACTTCCGACAGTTGTGTTTTTTTTAGCGATTCCGAGAATATGGCCTCAAATTTAAACCTTGGAAATGTGAGCTATTTAAAATTAGGGTCGAGTTCTCAAGCAGAACAGTGAGTGAGCACGGATTCGAGATGGGGGACTAGTACATCGAAGCAGCACGTGGCTG
gi|12 : TTAGATTAGCAAGTGAAGGGGCA---GGGATGACTGCGCGGTATCTTGGAAGTCTTAATCTGAGAAT-CGGGGACTA------TGACTTT--GCACACCCGATATATGTTGGCCCCT-TACAA-GATGA-CATG---TTACTAGGAATAGATTTCCTGCTTGCACATGGTGCCGAAGTTTCA--TGTGAAGCG--GAAACGCTCAAGGTCAAGGGCATAAACACAATC-------------CCGAAGCGGCACTGCCAGTATTCGATGCATTTTCGGCCCAC-AGGGTGCGAGa
gi|13 : AATGC-TAATGCGCTATCCAGGGATATATTGGACACATGTCAGAGC-TACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCAGTGGAGGCAGGTACTGCCACCATATGCA-TGAACGCTGGCATGAGTTTAACACCGAGGTCCACAATGTGATTCCCTAATGTCTCAGTTGTTT-CT--GGAATCGCCTGGGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCATTGAG-ATACTAGGCTCCACT
gi|14 : ATGCATAAGGCGCTATCCAGGGATATATTGGACATCTGTCAGAGCATACTCTACTAAAGTCCGGCTAGAGGATTTGCCTTGCAGTGGAGGCAGGTACTGCCACCATATGCACTGAACGCTGGCATGAGTTTAACACCGAGGT-CACAATGTGATTCCCTAATG-CTCAGTTGTTTGCTTGGAAATCGCCT-GGATCGCGGAAAGTCAGTCCGCTGAGGAAAGTAGCATTGAGAATACTAGGCTCCACTcttc
gi|15 : GAGCGC-GCC---TATGGAGGTCA------AGCC------CT-TTA-CCACTCATCGACGAGTGTATGGACACCCTAGC
gi|15 : tCCCTTTACCACT------CATCGACGAGTGTATGGACACCCTAGCTGGAAACCGTCGGTT---CTCG--AAGCTAGAC---GC-AAATGTGACCTATTGGCAGATTAAGATAGCCCAAGAAGACCGGAAGAAGACAGTCTTTGTAACGAAATATGGCTTATTCtggaaaccgtcggttctcgaagctagacgcaaatgtgacctattggcagattaagatagcccaagaagaccggaagaagacagtctttgtaacgaaatatggcttattc
gi|16 : tgagcgcgcctatggaggtcaagAACGAAATATGGCTTATTCGAATTCAC--GAAAGTGGGTTTCGGTCTGTGTAATGCCCCGGCGACCTTCGCTAGGGCCATCC-ATCTGGTGTTGCACAGACTGAACTGGAAAA
gi|17 : TGACTTGAGCGCAGATATGCCAGACTTTATA---TTGGAGCCTGCCAGC-ATTTTCCCGCCTGGCGTAGTAGTT------------------------------TCACGGACTTATAATGCCGCAGGTAAGAG
gi|18 : GTACCAAAGTGAGGGAAACTGCCCCTGCTGTGTCGGTTTCAAACGCACCGACCCCAAAGTGCACCGTGTGTTAGTTG-AGG-GG
gi|2 : CGTGTTCCTCTTCAGATATGAGGCCAGCAAATCAATGCCACTATCGATACAGTTGCAGACATCACTATTACCTCGGGGGAGGTTTATA-GGTCACTGAGACCTTGGCCCGAGATGGTAAGGGACACCAATGTTAGATTAGCAGGTGAAGGGGCA---GGGGTGACTGTGCAGTATCTTGGGAGTCTTAATCCGAGAAT-CGGGGACTACTAGTATGACTTT--GCACACCCGATATATGTTGGCCACT-TACAA-GATGG-CATG---TCGCTAGGAATAGATTTCCTTCGTGCACATGGTGCCGAAGTTTCA--CGTGAAGTG--GGAACACTCAAGGTCAAAGGCATAAATACGACCTTTAAACTGAGTACTGAAGCGGCACTGCCAGTATTCGATGCATTTTCGACCCGC-AGGGTGCGAGCTCCCCCGCATACCGCGCAGGTGATTGAATTTGACTTGAGTGCAGATATGCCAGACTTTATA---CTGAAACCTGCCAGC-ATTTTCCCGCC--------------------------T----GGCATAGTAGCTTCACGGACTTATAATGTCGCAGGTAAGAGAGATAAACTGTGCGTTCTTAACCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGAGGAAACTGTCCTTGCTGTGTTGGTT--GTACACACCGACCCCAAAGTGCACCGTGTGTTTGTTG-AGGAAGAAAACACTTTTCAGCACATAGCTCTGCTCTTGGAAC--------AGGTAG------GGAAGAGTAC-GCC---AGTGTAGGTTA------GGTCTGAGG-CT-TTA-GAGCTAGTCAAGGAGTTTGCGGACGTCTTTGCAGAAGATGACCTTGACCTC-GGACATTTTTCTAAGATCAAGCATCGCATTGACACTG-GCGATGCACTCCCCGTTAATTATAAACAGC--GGAT-GCACCGCATCCCAGCCATGTTCCAGGGAGAAGACG-AAGGTCATCTAGATAATATGCT--GAAGGCCGGAGTCATTCAGCC-A
gi|20 : AATTTAAACCTCGGAAATGTGAGCTAATTAAACTTAAGGTTGAGTTCTTGGGCAGATCAGTGAGTGAG
gi|21 : -AAGGTCATCTAGACAATATGCT--GAAAGCCGGAGTCATTCAGC
gi|22 : TCGAATTCACACGAGAATGGGTTTTGGTCTGTGTAACGC
gi|23 : CCGATCATCATAGCCTGGTTTGGCTG-ATGAATTTCAAG
gi|24 : GGAAAGTAACTTAGAG-GTATTAAGCCCCACT
gi|3 : T----GGCATAGTAGCTTCAAGGACTTATAGTGCCGCAGGTAAAAGAACTAAACTG--CGTTCTTAATCTAACAGACAGGAGCTACATTATTAAGACAGGTACCAAAGTGGGGGAAAC------------GTCGGTT--GAACACA------CCAAAGTGCGTCGTGTGTTTGTTGAAGG-GGAAAACACTTGTCAGCACATAGCCCCGCTCTTGGAACAGGTACTGAGGTAG------GGAAGAGCGC-GCC---GGTGGAAANCAGCACATAGCCC-C-G-CTCTTG-GAACAGGTAGAGGctt
gi|3 : cGG-TGGAAAN------CAGCACATAGCCCCGCTCTTGGAAC--------AGGTAGAGGTAGGGAAGAGCGC-GCC---GGTGGAGATTA------AGTCTGA-GGCT-TTG-GAGCGAGTCAAGGAGTTTGCGGACGTCTTTGCAGTAGATGACCTTGACCTT-GGAATTTTTTCCAAGATCGAGTATCGCATCGACACTG-GCGATGCACTACCCGT------TAAACAGC--GGTT-GCGCCGCACTCCAGCCGTGTTCTAGGGGGAAGAGG-AAGGTCATCTAGACAACATGCT--GAAGGCCGGAGTCATTCAGCC-A------TCTTCG-GACTGGGCGTCAGCACCAGTCCTGGTTAGGAAGAAGGATGGTAGTGTTCGCTA-------GTGC-GTTGACTACAGAGCTTTG-AACAAAGTGAGT-GT-TAAGTAC-------ACGTACCCTTAACCACT------CATCGAGGAGTtagggaagagcgcgccggtggagattaagtctgaggctttggagcgagtcaaggagtttgcggacgtctttgcagtagatgaccttgaccttggaattttttccaagatcgagtatcgcatcgacactggcgatgcactacccgttaaacagcggttgcgccgcactccagccgtgttctagggggaagaggaaggtcatctagacaacatgctgaaggccggagtcattcagccatcttcggactgggcgtcagcaccagtcctggttaggaagaaggatggtagtgttcgctagtgcgttgactacagagctttgaacaaagtgagtgttaagtacacgtacccttaaccactcatcgaggagt
gi|4 : ctggcatagtagcttcaaggacttatagtgccgcaggtaaaagaactaaactgcgttcttaatctaacagacaggagctacattattaagacaggtaccaaagtgggggaaacgtcggttgaacacaccaaagtgcgtcgtgtgtttgttgaaggggaaaacacttgtcagcacatagccccgctcttggaacaggtactgaggtagggaagagcgcgcc----TTATTAGGAATAGATTTCCGGTGTGCACATGGTGCCGAAGTTTCATATGTGAAGCG--GGAACGCTCAAGGTCAAGGTCATAAACGCAACCTTTGAACTGGGTACCGAAGCGTCACTGTCAGTATTCAATGCGTTTTCGGCCTGC-AGGGTGCGAGTTCCTCCGCACACTGCACAGGTGATTGAATGTGACTTGAGCGCAGACATGCCAGAATTTATA---CTGGAGCCTGCCAGT-ATTTTCCCGCCTGGCATAGTAGCTTCGCGGACATATA------ATATCGCAGCT--------------------AGGTAAGAGAGCTAAGTTATATGTTCTTAACCT----NNNNNNNNNNNNNNNNNNNNNNNNNGTACCAAAGTGAGGGAAACTGCCCCTGCTTTGTCGGTT--GAACGCACCTACCCCAAAGTGCGCCGTGTGTTAGTTG-AGG-GGG-GACACTTATCAGCACATAGCCCCGCTCTT---------------------------ATGAGCGCTGCC---TATGGAATTCA------AGCC------CT-TTACGCACTCATCGACGAGTGTATGGAC
gi|5 : GGAGTTATAGTACC-ATCTAAATCT----GAATGGGCCTCTGCACCGGTACTGGTCCAGAAAAAGGATGGTTCTGAGCGCT-----A-T-TGC-GTTGACTTCAGG----------AAGGTGAATAGTCTG---ACAAAGAAAG-ATGCCTTT--CCACTGCCAAATATTGAAGAGTGCATGGATGCTCTTAGTGGAAAT-----GTTTACCTCAGTACATTAGACATGGCGCAA---GG-CTGTTATCAGATGGAAGTGGACCCTCATGACCGCCATAATTTGGCCTTCATAACCAAGCATGGACTGTTTGacc
gi|6 : agtttcaggaggttttcgcaagaaatgacatggatattggtcttttcaaaggaatcactcaaagtgaacacaggagaggttcagccagtccgcactaaactcagacgaaccccattaggctttgaaaagtaggaggaaacacatttggaaagcttattacataatGTGTTCCTCTTCAGATAGGAGGCCAACAAATCAATGCCACTATTGATATAGCTGCATACATCAGTATTATCTCGGGGGAGGTTTATA-GGTCACTGAGGCCCCGGCCCAAGATGGTAAGGGACATCAATGTTAGATTAGCAGGTGAAGGGGCAGGTGGAATAACTGC-CAGTATCTGGGAAGTCTT-ATCTGAGAATCCGGGGACTA------TGACTTTTGGCACACCCGAC-TATGTTGGCCCTTGTACAACGATGATCATTTTATTACTAGGAATATATTTCCTGCGTGCACCTGGTGCCAAAGTTTC--ATGTGAAGCG--GACACGCTCAAGGTCAAGGGCATAGATACGACTTTTAAACTGAGTACCAAAGCGACACTGCCAGTATTCGATGCATTTTC
gi|7 : GCTGACTCCGCTATATGCGGCAACTGGAAAAAAAGGTGTCCGATGGAGAGAT-------------CCTTTGAGGACCTCCTTAGGTCGATAAATAATCCTCCAGTAT--------------AGTCAAGGTCATTTTATTCTGGACACTCATGCCTCGGATCATGCCGTCGGCGGGGAATTAAGTCAAGTCCAGAACGGGAACGATAGAACAATAGGTTATGGCAGCGCTCAAGTGCTATCACCATGGTTGATGCAACCACCGACTATTTGTAACACCAGGAAAGAGTTGC-GGCGGGTGCAATTCAAATTTACTTTGCCAATTTCAGCCACTACCTGACTTAGGCACGGAATTACACAGTCACAGGACCGATCATCATAGCCTGGTTTGGCTGAATGAATTTCAAGGCATa
gi|8 : AAC--------AGGTAG------GGAAAAGCAC-ACC---TGTGGAGGTCA------AGTCTGATG-CT-TTG-GAGCCAGTACAGGAATTTGCCGATGTCTTTGCAGTAGATGACTTTGACCTC-AGAAAATTTTCCAAGACTGAGCATTGAATTGACACTG-GCGATGCACTACCCAT------TAAACAGT--GGAT-GCGCAGCGATCCTGCCGTGTTCTGGGGGGAAGA-GAAAGGTCATTTAGACAACATGCT--GAAGGCCGGAGGCACTCGGCC-ATCT---TTTTCA-GACTGGGCATCAGCAT---------TCAGGAAGAAGGATGGTAGTGTTTGCTGGTACA-TGTAC-ATGGACTACAGATCCTTG-AACAAGGT-AAT-GC-TA---AT-------GCGt
gi|9 : tAAC--------AGGTAG------GGAAAAGCAC-ACCCTGTGTGGAGGTCA------AGTCTGATG-CT-T-G-GAGCCAGTACAGGAATTTGCC-ATGTCTTTGCAGTAGATGACTTT-ACCTCAGGAAAATTTTC-AAGACTGAGCATTGAAT-GACACTGTGCGATGCACTACCCAT-------ATACAGTTTGGATTGCGCAGCGATCCTGCCGTGTTCTGGGAAGA-GA-G-AAGGTCATTTAGACAACATGCT--GAAGGCCGGAGGCACTCGGCCAATCT---TTTTCATGACTGGGCATCAGCATT--------TCAGGAAGAA-GATGGTAGTGTTTGCTGGTACA-TGTAC-ATGGACTACAGATCCTTGAAACAAGGTAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT